Query 008528
Match_columns 562
No_of_seqs 102 out of 124
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ntx_A EMB|CAB41934.1, prone8; 100.0 1E-195 5E-200 1446.8 24.1 359 114-472 4-363 (365)
2 2dae_A KIAA0733 protein; mitog 65.5 3.4 0.00012 34.7 2.5 35 406-440 12-48 (75)
3 1wgl_A TOLL-interacting protei 47.0 14 0.00048 29.0 3.1 34 405-438 10-43 (59)
4 4h63_V Mediator of RNA polymer 34.0 79 0.0027 28.6 6.2 64 395-465 11-74 (135)
5 2dhy_A CUE domain-containing p 30.8 33 0.0011 27.8 2.9 34 405-438 19-52 (67)
6 1p5s_A RAS GTPase-activating-l 20.0 3.6E+02 0.012 25.3 8.2 112 278-439 37-151 (203)
7 1b63_A MUTL; DNA mismatch repa 19.4 77 0.0026 31.2 3.7 29 193-229 133-161 (333)
8 2oz8_A MLL7089 protein; struct 19.0 64 0.0022 32.0 3.0 50 120-169 63-126 (389)
9 3lof_A Heat shock 70 kDa prote 17.9 4.1E+02 0.014 21.8 8.8 77 360-457 6-82 (113)
10 3kfo_A Nucleoporin NUP133; nuc 16.9 2.1E+02 0.0071 28.7 6.1 150 287-462 76-261 (288)
No 1
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=100.00 E-value=1.5e-195 Score=1446.83 Aligned_cols=359 Identities=77% Similarity=1.154 Sum_probs=310.4
Q ss_pred CCCCCChHHHHHHHHHhhhhcCCCCCCCCcchhHHHhhhhhhhhhhhhhccccccCCCChhHHhhhhhccceEeecccee
Q 008528 114 RDRQPSDMELMKERFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQRKLEPMPPERKARWRKEINWLLSVTDHI 193 (562)
Q Consensus 114 ~~~~~se~e~MKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~I 193 (562)
++..++|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||
T Consensus 4 ~~~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~I 83 (365)
T 2ntx_A 4 SERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHI 83 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGC
T ss_pred ccCCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeecccee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCCCceEEEEeeccccccccCchHHHHHHHHHHHHHHhcCCCCeeeeccCCCCCCC-CccccccccccCcc
Q 008528 194 VEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIPALRKLDAMLIESLDNFGYQNEFWYPSGKSDDSE-KNVTRHEDKWWIPT 272 (562)
Q Consensus 194 VElvPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsF~d~tEFWYv~~g~~~~~-~~~~r~eeKWWLP~ 272 (562)
||||||+|++|||+++||||||||+|||||||||||||+||||+||||+|+||||||++|+..+. ++.+||++|||||+
T Consensus 84 VE~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~~~~~~~~~r~eeKWWLP~ 163 (365)
T 2ntx_A 84 VEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEEGQQARNDRTNDKWWLPP 163 (365)
T ss_dssp EEEEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC--------------------CCC
T ss_pred EEeccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCccccCCcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999899999999986554 34579999999999
Q ss_pred ccCCCCCCCHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhcCCCchHHHhhccccCccchhHHHhhhhccCCCChHHHHhh
Q 008528 273 VKVPENGLSEEGRRWIQSQKESVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLAT 352 (562)
Q Consensus 273 pkVP~~GLSe~~RK~L~~qrd~vnQIlKAAmAIN~~vL~EMeiPe~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ 352 (562)
|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+||+|+|||||||+|
T Consensus 164 p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ 243 (365)
T 2ntx_A 164 VKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSITEEWFDPEQFLAM 243 (365)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHHTCSSCCHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHHhhccCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhHHHhhhhhHHHHHHhhhcccCCCCccCcccccchhHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhccc
Q 008528 353 MDLSNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQRFPGISQSTLDISKIQYNR 432 (562)
Q Consensus 353 ldLssEH~~Le~~nRiEAsi~iWrrK~~~k~~kssW~~~v~~dKre~l~eRAEtlL~~LK~RfPglpQTsLD~sKIQyNk 432 (562)
|||||||+|||+||||||||||||||++++++||||+++++.|||++|++|||+||+||||||||||||+||++||||||
T Consensus 244 ldlssEH~~le~anRiEAsi~vWrrk~~~k~~kssW~~~~~~dK~~~l~eRAEtlL~~LKqRfPglpQTsLD~sKIQyNk 323 (365)
T 2ntx_A 244 LDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSLEKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNK 323 (365)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHCC
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCCC
Q 008528 433 DVGQAILESYSRIIESLAHTVMSRIDDVLYADSLAQNKEP 472 (562)
Q Consensus 433 DVG~aILESYSRVLesLAf~I~sRIdDVL~~D~~~k~~~~ 472 (562)
|||||||||||||||||||||++|||||||+|+++++|+.
T Consensus 324 DVG~aILESYSRvLesLAf~I~sRIdDvL~~D~~~~~~~~ 363 (365)
T 2ntx_A 324 DVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQTL 363 (365)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 9999999999999999999999999999999999998753
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.54 E-value=3.4 Score=34.70 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCCCCcchhhhhhhh--ccchhHHHHHH
Q 008528 406 TILLLLKQRFPGISQSTLDISKIQ--YNRDVGQAILE 440 (562)
Q Consensus 406 tlL~~LK~RfPglpQTsLD~sKIQ--yNkDVG~aILE 440 (562)
.|++-||||||.+|+...-.+=.| +|.|---.+|.
T Consensus 12 qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~ 48 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLS 48 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHH
Confidence 478899999999999988765555 56665555554
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=47.01 E-value=14 Score=29.00 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhHHHH
Q 008528 405 ETILLLLKQRFPGISQSTLDISKIQYNRDVGQAI 438 (562)
Q Consensus 405 EtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aI 438 (562)
|.-+..|+.-||++.+..+...=..+|.||..||
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI 43 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4556778889999999998888888888888776
No 4
>4h63_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=34.00 E-value=79 Score=28.56 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 008528 395 EKRELFEERAETILLLLKQRFPGISQSTLDISKIQYNRDVGQAILESYSRIIESLAHTVMSRIDDVLYADS 465 (562)
Q Consensus 395 dKre~l~eRAEtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aILESYSRVLesLAf~I~sRIdDVL~~D~ 465 (562)
.|.+-|-.|..+....|-++| +.-+..++|+ |+|.+.+..|+|. ++.=|.+|+.-++|+|-.=+
T Consensus 11 ~k~~~l~~rid~~v~~ll~~f----~~iv~lA~v~-~~~~~~~A~e~~~--~~~~~~~~vra~e~LL~L~r 74 (135)
T 4h63_V 11 QRTNTLNSSIDNATLTILSRF----QDILDIAINE-GKDKYTVAPEVYQ--IECHTVSMVRAVEQLLDVSR 74 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCT-TCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcC-CCcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888888 5557788888 8899999999997 77778888888898886544
No 5
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.85 E-value=33 Score=27.75 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhHHHH
Q 008528 405 ETILLLLKQRFPGISQSTLDISKIQYNRDVGQAI 438 (562)
Q Consensus 405 EtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aI 438 (562)
+..+..|++-||.+....+..-=..+|.||..||
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aI 52 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATI 52 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 3456679999999999888877777888888776
No 6
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=19.96 E-value=3.6e+02 Score=25.28 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhcCCCch--HHHhhccccCccchhHHHhhhhccCCCChHHHHhhcCC
Q 008528 278 NGLSEEGRRWIQSQKESVNQVLKAAMAINAQVLSEMEIPE--SYIESLPKNGRASLGDSIYKSITVEHFDPEQFLATMDL 355 (562)
Q Consensus 278 ~GLSe~~RK~L~~qrd~vnQIlKAAmAIN~~vL~EMeiPe--~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ldL 355 (562)
.|+.-+.+++..+..+....+-.++.-|++.. ..+||. .+.++| |+|-
T Consensus 37 ~~~~~d~~rk~~~~ye~l~~~~e~~~WIe~~l--~~~l~~~~~f~~~L-rDGv--------------------------- 86 (203)
T 1p5s_A 37 NTRLAAKQRETLQAYDYLCRVDEAKKWIEECL--GTDLGPTSTFEQSL-RNGV--------------------------- 86 (203)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH--TSCCCCGGGHHHHH-TTSH---------------------------
T ss_pred ccchHHHHHHHHhhhhHHHHHHHHHHHHHHHh--CCCCCChHHHHHHH-cchH---------------------------
Confidence 34544455556667776666677777777653 234442 444444 3331
Q ss_pred cchhhHHHhhhhhHHHHHHhhhcccCCCCccCcccccchhHHHHHHHHHHHHHHHHHhhCCCCCcchh-hhhhhhccchh
Q 008528 356 SNEHAVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQRFPGISQSTL-DISKIQYNRDV 434 (562)
Q Consensus 356 ssEH~~Le~~nRiEAsi~iWrrK~~~k~~kssW~~~v~~dKre~l~eRAEtlL~~LK~RfPglpQTsL-D~sKIQyNkDV 434 (562)
-.-.++|+|.-..+ +|++.. ++..|-.+ |--...|...+ .| |+|.+.| ++.-+.-+||+
T Consensus 87 ----vLCkLiN~l~P~sv---~kI~~~-s~~~f~~~----------eNI~~FL~ac~-~~-Gvp~~~lF~t~DL~e~kn~ 146 (203)
T 1p5s_A 87 ----VLALLVQKFQPDKL---IKIFYS-NELQFRHS----------DNINKFLDFIH-GI-GLPEIFHFELTDIYEGKNL 146 (203)
T ss_dssp ----HHHHHHHHHCTTSC---CCCCCC-SSSCCCHH----------HHHHHHHHHHH-HT-TCCGGGCCCHHHHHSCSCH
T ss_pred ----HHHHHHHHhCCCCc---ccccCC-CCCcchHH----------HHHHHHHHHHH-Hc-CCCcccccCHHHHHhcCCH
Confidence 12267777754332 566432 33455433 33444555555 35 9999886 88888889998
Q ss_pred HHHHH
Q 008528 435 GQAIL 439 (562)
Q Consensus 435 G~aIL 439 (562)
.+.|.
T Consensus 147 ~~Vi~ 151 (203)
T 1p5s_A 147 PKVIY 151 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 7
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=19.40 E-value=77 Score=31.19 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=22.5
Q ss_pred eEEeecccccCCCCceEEEEeeccccccccCchHHHH
Q 008528 193 IVEFVPSQQKSKEGVSMEIMVTRQRNDLHMDIPALRK 229 (562)
Q Consensus 193 IVElvPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrK 229 (562)
.++..|. ..+.||+++| .||+.|+|+=+|
T Consensus 133 ~~~~~~~--~~~~GT~V~v------~~Lf~n~P~r~k 161 (333)
T 1b63_A 133 NVTVKPA--AHPVGTTLEV------LDLFYNTPARRK 161 (333)
T ss_dssp EEEEEEE--CCCSEEEEEE------ESTTTTCHHHHH
T ss_pred eEeeecc--cCCCCCEEEE------ecccccchhhhh
Confidence 4566664 3578999999 789999999765
No 8
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=19.00 E-value=64 Score=31.96 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhhhhcCC-------CCCCCCc------chhHHHhhhhhhhhhhhhhcc-ccccC
Q 008528 120 DMELMKERFAKLLLGED-------MSGGGKG------VSSALALSNAITNLAASIFGE-QRKLE 169 (562)
Q Consensus 120 e~e~MKErFaKLLLGED-------mSG~gkG------V~tAlAiSNAITNL~AsvFGe-~~rLE 169 (562)
-...+++.++.+|.|.| +.+++.| .+...||..|+-.|.+-..|. +|+|=
T Consensus 63 ~~~~i~~~l~p~l~G~d~~~~~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lL 126 (389)
T 2oz8_A 63 IESVFEHEVWPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLL 126 (389)
T ss_dssp HHHHHHHHTHHHHTTSCHHHHTTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHc
Confidence 35566777999999998 4334444 467789999999999998887 66653
No 9
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=17.93 E-value=4.1e+02 Score=21.79 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=49.0
Q ss_pred hHHHhhhhhHHHHHHhhhcccCCCCccCcccccchhHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhccchhHHHHH
Q 008528 360 AVLDLKNRIEASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQRFPGISQSTLDISKIQYNRDVGQAIL 439 (562)
Q Consensus 360 ~~Le~~nRiEAsi~iWrrK~~~k~~kssW~~~v~~dKre~l~eRAEtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aIL 439 (562)
+.+|..|.+|.-||-.+..+... .++..++.+.++.+..-.+.+...|.. |.+.-..-+
T Consensus 6 e~ieakN~lEs~iy~~e~~l~e~----~~~~kl~~eek~~i~~~i~e~~~wL~~-----------------~~~a~~e~i 64 (113)
T 3lof_A 6 ERVSAKNALESYAFNMKSAVEDE----GLKGKISEADKKKVLDKCQEVISWLDA-----------------NTLAEKDEF 64 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCG----GGBTTBCHHHHHHHHHHHHHHHHHHHH-----------------CTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcch----hhhccCCHHHHHHHHHHHHHHHHHHHc-----------------CCcCCHHHH
Confidence 45789999999999999988541 355445555555555555566666653 111122334
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 008528 440 ESYSRIIESLAHTVMSRI 457 (562)
Q Consensus 440 ESYSRVLesLAf~I~sRI 457 (562)
+.=-.-|+.++..|+.|+
T Consensus 65 ~~k~~eL~~~~~~i~~k~ 82 (113)
T 3lof_A 65 EHKRKELEQVCNPIISGL 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566778888888775
No 10
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=16.92 E-value=2.1e+02 Score=28.70 Aligned_cols=150 Identities=12% Similarity=0.172 Sum_probs=92.2
Q ss_pred HHhhhhHHHHHHHHHHHHHhHhhhhcCCCchHHHhhccccCccchhHHHhhhhccCCCChHHHHhhcCCcch----hhHH
Q 008528 287 WIQSQKESVNQVLKAAMAINAQVLSEMEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLATMDLSNE----HAVL 362 (562)
Q Consensus 287 ~L~~qrd~vnQIlKAAmAIN~~vL~EMeiPe~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~~ldLssE----H~~L 362 (562)
.++.|.++..+|+++. +-++..|.+. .=+.-+.+.+++.+.-...+|++|++-|-|-.. +.||
T Consensus 76 lI~~Q~~L~~~i~~~~----------~~~~k~~~~~---al~~lf~~~~~kL~~~~~L~~~eLIDLLTLid~~~~F~~AL 142 (288)
T 3kfo_A 76 TIDAEKNISNKLKKGE----------VQICKRFKNG---SIREVFNILVEELKSTTVVNLSDLVELYSMLDDEESLFIPL 142 (288)
T ss_dssp HHHHHHHHHHHHHHTC----------SCBCGGGSSH---HHHHHHHHHHHHHHSSSCCCHHHHHHHHTTBCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----------hHHHHHhhhH---HHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCChhHHHHHH
Confidence 4578889999888642 1355555432 013456677788888899999999997765443 3577
Q ss_pred Hhhhhh----------HHHHHHhhhcccCCCCccCcccccchhHHHHHHHHHHHHHHHHHhhC-----CCCCcchhhhhh
Q 008528 363 DLKNRI----------EASIVIWKRKMHHKDSKSSWGSAVSLEKRELFEERAETILLLLKQRF-----PGISQSTLDISK 427 (562)
Q Consensus 363 e~~nRi----------EAsi~iWrrK~~~k~~kssW~~~v~~dKre~l~eRAEtlL~~LK~Rf-----PglpQTsLD~sK 427 (562)
.++... .+--.||||=+..-+ |. ..+ - .=..||..|++.++ +-||-=++=+.|
T Consensus 143 kvL~~~~~~~~~e~~~~l~~lIWRRcilrDd----~~-~~~---T----aLy~tL~~~~~~~l~~~~~~~lp~~~~l~d~ 210 (288)
T 3kfo_A 143 RLLSVDGNLLNFEVKKFLNALVWRRIVLLNA----SN-EGD---K----LLQHIVKRVFDEELPKNNDFPLPSVDLLCDK 210 (288)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHT----TS-TTC---H----HHHHHHHHHHHTTHHHHSCEECCCHHHHTCG
T ss_pred HHHHhccccCCHHHHHHHHHHHHHHHHhhcC----Cc-chh---h----HHHHHHHHHHHhhhcccCCCCCCchHHHhcc
Confidence 777776 355789999887644 42 100 0 12467777777752 235544433333
Q ss_pred h------------hccch---hHHHHHHHHHHHHHHHHHH--HHHhhhhhhh
Q 008528 428 I------------QYNRD---VGQAILESYSRIIESLAHT--VMSRIDDVLY 462 (562)
Q Consensus 428 I------------QyNkD---VG~aILESYSRVLesLAf~--I~sRIdDVL~ 462 (562)
. +|+.| |-..|=+.|+. ||+|.+. +-.||--++-
T Consensus 211 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~s~ig 261 (288)
T 3kfo_A 211 SLLTPEYISETYGRFPIDQNAIREEIYEEISQ-VETLNSDNSLEIKLHSTIG 261 (288)
T ss_dssp GGCCHHHHHHHHTTSSSCHHHHHHHHHHHHHH-HHHHTGGGHHHHHHHHHHH
T ss_pred ccccHHHHHHHhcCCchhHHHHHHHHHHHHHH-HHhcCcchhHHHHHHHHHH
Confidence 3 23333 33355555654 5778888 7778777765
Done!