Query 008528
Match_columns 562
No_of_seqs 102 out of 124
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 05:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v97a5 d.133.1.1 (A:695-1332) 27.3 13 0.00098 37.0 2.6 28 149-176 579-611 (638)
2 d1t3qb2 d.133.1.1 (B:166-786) 26.1 17 0.0012 35.8 3.0 36 145-182 583-619 (621)
3 d1wgla_ a.5.2.4 (A:) Toll-inte 22.7 29 0.0021 25.8 3.1 35 404-438 9-43 (59)
4 d1mn3a_ a.5.2.4 (A:) Vacuolar 22.6 51 0.0037 24.1 4.4 34 405-438 13-46 (54)
5 d1ffvb2 d.133.1.1 (B:147-803) 17.3 38 0.0028 33.5 3.5 38 144-182 615-652 (657)
6 d1rkba_ c.37.1.1 (A:) Adenylat 17.0 9 0.00066 29.4 -1.0 39 313-351 2-40 (173)
7 d1rx0a2 e.6.1.1 (A:10-240) Iso 16.6 79 0.0058 26.2 5.0 44 276-323 6-50 (231)
8 d2ia7a1 d.373.1.1 (A:23-133) U 16.2 34 0.0024 26.7 2.3 37 147-183 8-56 (111)
9 d1n62b2 d.133.1.1 (B:147-809) 15.8 41 0.003 33.2 3.3 39 145-184 622-660 (663)
10 d1bnda_ g.17.1.3 (A:) Brain-de 15.0 43 0.0031 27.5 2.7 29 187-215 3-35 (109)
No 1
>d1v97a5 d.133.1.1 (A:695-1332) Xanthine oxidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.35 E-value=13 Score=37.05 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred Hhhhhhhhhhhhhhcc----cccc-CCCChhHH
Q 008528 149 ALSNAITNLAASIFGE----QRKL-EPMPPERK 176 (562)
Q Consensus 149 AiSNAITNL~AsvFGe----~~rL-EPl~~ekK 176 (562)
||.|||-|....-|.. .+.+ =|+.|||=
T Consensus 579 AI~nAi~~A~g~~~~~~~~~~~~~~lP~TPerV 611 (638)
T d1v97a5 579 AIKDAIRAARAQHTNNNTKELFRLDSPATPEKI 611 (638)
T ss_dssp HHHHHHHHHHHHHTCCCTTCCCCCCBSCCHHHH
T ss_pred HHHHHHHHhhhhhccccccccccCCCCCCHHHH
Confidence 8999999998888873 4444 49999973
No 2
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large subunit QorL {Pseudomonas putida [TaxId: 303]}
Probab=26.13 E-value=17 Score=35.80 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=24.4
Q ss_pred hhHHHhhhhhhhhhhhhhc-cccccCCCChhHHhhhhhc
Q 008528 145 SSALALSNAITNLAASIFG-EQRKLEPMPPERKARWRKE 182 (562)
Q Consensus 145 ~tAlAiSNAITNL~AsvFG-e~~rLEPl~~ekK~~WrrE 182 (562)
++|=||.|||.|-... +| .+.+| |+.|||=-+.-+|
T Consensus 583 ~~~~AI~nAi~~A~g~-~~~r~~~l-P~tpe~v~~al~~ 619 (621)
T d1t3qb2 583 SAPAAVVAAVNDALAH-LEVVIETV-PITPERIFRSIQE 619 (621)
T ss_dssp HHHHHHHHHHHHHHGG-GTCCCCEE-SCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCC-cCCcccCC-CCCHHHHHHHHhh
Confidence 4566999999987653 33 34444 9999986555443
No 3
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.69 E-value=29 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCCCcchhhhhhhhccchhHHHH
Q 008528 404 AETILLLLKQRFPGISQSTLDISKIQYNRDVGQAI 438 (562)
Q Consensus 404 AEtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aI 438 (562)
+|..+..||.-||++-...+..-=+..|-+|+.||
T Consensus 9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~ai 43 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAI 43 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHH
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 35568899999999988777766666666666654
No 4
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.55 E-value=51 Score=24.10 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHHHHHhhCCCCCcchhhhhhhhccchhHHHH
Q 008528 405 ETILLLLKQRFPGISQSTLDISKIQYNRDVGQAI 438 (562)
Q Consensus 405 EtlL~~LK~RfPglpQTsLD~sKIQyNkDVG~aI 438 (562)
+..+..||.-||++....+..-=...|-+|+.||
T Consensus 13 ~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~ai 46 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCV 46 (54)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 4568899999999998888877777777787776
No 5
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase molybdoprotein {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=17.32 E-value=38 Score=33.50 Aligned_cols=38 Identities=24% Similarity=0.159 Sum_probs=26.1
Q ss_pred chhHHHhhhhhhhhhhhhhccccccCCCChhHHhhhhhc
Q 008528 144 VSSALALSNAITNLAASIFGEQRKLEPMPPERKARWRKE 182 (562)
Q Consensus 144 V~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrE 182 (562)
+++|=||.|||-|-... .|--.+==||.|||=-..-+|
T Consensus 615 ~~~~~Ai~nAI~~A~~~-tG~r~~~lP~Tpe~v~~al~~ 652 (657)
T d1ffvb2 615 VGSIPTFTAAVVDAFAH-VGVTHLDMPHTSYRVWKSLKE 652 (657)
T ss_dssp HHHHHHHHHHHHHHHGG-GTCCCCCSCCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh-hCCccCCCCCCHHHHHHHHHh
Confidence 34677899999987432 365444459999986665554
No 6
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=16.98 E-value=9 Score=29.41 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCCchHHHhhccccCccchhHHHhhhhccCCCChHHHHh
Q 008528 313 MEIPESYIESLPKNGRASLGDSIYKSITVEHFDPEQFLA 351 (562)
Q Consensus 313 MeiPe~y~esLPKnGrasLGd~iYr~it~d~Fspe~ll~ 351 (562)
|-+|-..+--.|-+||++++..|-+.+.-..++.++++.
T Consensus 2 m~~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~ 40 (173)
T d1rkba_ 2 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 40 (173)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHH
Confidence 557777778889999999999998887777777776664
No 7
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.62 E-value=79 Score=26.22 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHhhhhHHHHHHH-HHHHHHhHhhhhcCCCchHHHhhc
Q 008528 276 PENGLSEEGRRWIQSQKESVNQVL-KAAMAINAQVLSEMEIPESYIESL 323 (562)
Q Consensus 276 P~~GLSe~~RK~L~~qrd~vnQIl-KAAmAIN~~vL~EMeiPe~y~esL 323 (562)
|.-||+|+++...+.-|+++...+ ..|..+-.. =.+|...++.|
T Consensus 6 ~~~~Lt~e~~~l~~~~r~F~~~~i~p~a~~~d~~----~~~p~~~~~~l 50 (231)
T d1rx0a2 6 PSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQK----ELFPVDVMRKA 50 (231)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH----TCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHhc----CCCCHHHHHHH
Confidence 677999999999999999998744 444444432 23666655554
No 8
>d2ia7a1 d.373.1.1 (A:23-133) Uncharacterized protein GSU0986 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=16.15 E-value=34 Score=26.72 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHhhhhhhhhhhhhhcc----------cccc--CCCChhHHhhhhhcc
Q 008528 147 ALALSNAITNLAASIFGE----------QRKL--EPMPPERKARWRKEI 183 (562)
Q Consensus 147 AlAiSNAITNL~AsvFGe----------~~rL--EPl~~ekK~~WrrEm 183 (562)
.=+|-++|-||--|-+|| +|.| ||+.+..+...+.++
T Consensus 8 ee~I~q~i~nll~T~~GEr~~~p~fG~~l~~llFe~~~~~~~~~i~~~I 56 (111)
T d2ia7a1 8 EEDIAESIRIILGTARGERVMRPDFGCGIHDRVFSVINTTTLGLIENEV 56 (111)
T ss_dssp HHHHHHHHHHHHTCCTTSSTTCTTCSCGGGGCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccccCCccccEechhhhhhcchhHHHHHHHHH
Confidence 446889999999999998 8888 999999999998887
No 9
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase molybdoprotein {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=15.76 E-value=41 Score=33.17 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=30.8
Q ss_pred hhHHHhhhhhhhhhhhhhccccccCCCChhHHhhhhhccc
Q 008528 145 SSALALSNAITNLAASIFGEQRKLEPMPPERKARWRKEIN 184 (562)
Q Consensus 145 ~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmd 184 (562)
++|=||.|||-|-.+ .+|--.+=-||.|||=-+.-+|+.
T Consensus 622 ~~~~Ai~nAI~~A~~-~~G~r~~~lP~tpe~v~~~~~~~~ 660 (663)
T d1n62b2 622 GGVPCFSNAVNDAYA-FLNAGHIQMPHDAWRLWKVGEQLG 660 (663)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCCCCSCCCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHH-hcCCccccCCCCHHHHHHHHHHcC
Confidence 478899999998664 578777777999999866667764
No 10
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.05 E-value=43 Score=27.54 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.9
Q ss_pred eeccceeEEee----cccccCCCCceEEEEeec
Q 008528 187 LSVTDHIVEFV----PSQQKSKEGVSMEIMVTR 215 (562)
Q Consensus 187 Lsv~d~IVElv----Ps~Q~~~dG~~~EvM~~r 215 (562)
+||||.+-+.| |+.-+.-.|..+|||..=
T Consensus 3 ~svCdsvs~Wvt~~nk~ta~D~~G~~Vtvl~~v 35 (109)
T d1bnda_ 3 LSVCDSISEWVTAADKKTAVDMSGGTVTVLEKV 35 (109)
T ss_dssp EESSCEEEEEEEHHHHCEEEBTTSCEEEECSEE
T ss_pred cccccceEEEEEccCcceeEeCCCCEEEEEEEE
Confidence 79999999999 888889999999998654
Done!