Query 008530
Match_columns 562
No_of_seqs 100 out of 112
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 13:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10453 NUFIP1: Nuclear fragi 99.1 8.4E-11 1.8E-15 94.1 5.0 31 292-322 16-46 (56)
2 PF00642 zf-CCCH: Zinc finger 87.1 0.2 4.4E-06 34.6 0.2 26 380-406 2-27 (27)
3 smart00356 ZnF_C3H1 zinc finge 58.6 8 0.00017 25.4 1.9 24 380-405 3-26 (27)
4 KOG4031 Vesicle coat protein c 58.0 31 0.00068 35.1 6.7 19 292-310 101-119 (216)
5 KOG4264 Nucleo-cytoplasmic pro 50.4 12 0.00025 42.6 2.6 28 534-561 132-159 (694)
6 KOG1677 CCCH-type Zn-finger pr 49.8 9.5 0.00021 38.7 1.7 30 378-408 174-203 (332)
7 KOG2185 Predicted RNA-processi 41.6 11 0.00024 41.6 0.8 27 380-408 139-165 (486)
8 KOG0943 Predicted ubiquitin-pr 34.4 23 0.00049 44.2 1.9 14 547-560 1781-1794(3015)
9 PTZ00415 transmission-blocking 34.2 23 0.00051 45.2 2.0 16 377-392 59-74 (2849)
10 PF10446 DUF2457: Protein of u 33.8 20 0.00043 39.9 1.2 7 445-451 37-43 (458)
11 KOG3671 Actin regulatory prote 31.4 42 0.00091 38.1 3.2 10 438-447 494-503 (569)
12 KOG1492 C3H1-type Zn-finger pr 29.0 24 0.00053 36.6 0.9 27 379-408 204-232 (377)
13 PF01086 Clathrin_lg_ch: Clath 28.2 69 0.0015 32.0 3.8 27 296-322 111-137 (225)
14 KOG2002 TPR-containing nuclear 27.0 2.2E+02 0.0047 34.9 8.0 16 543-558 1001-1016(1018)
15 PRK10947 global DNA-binding tr 26.6 2.1E+02 0.0046 27.1 6.4 22 337-358 54-75 (135)
16 PF05178 Kri1: KRI1-like famil 25.4 1E+02 0.0022 27.8 4.0 46 318-363 3-49 (101)
17 KOG3241 Uncharacterized conser 23.1 1.7E+02 0.0038 29.7 5.5 36 285-320 33-73 (227)
18 PF12728 HTH_17: Helix-turn-he 22.4 43 0.00092 25.1 0.9 16 292-307 36-51 (51)
19 PRK10328 DNA binding protein, 21.3 2.9E+02 0.0063 26.2 6.3 23 336-358 53-75 (134)
20 COG0620 MetE Methionine syntha 21.1 1.8E+02 0.0039 30.9 5.4 46 310-355 13-58 (330)
No 1
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=99.11 E-value=8.4e-11 Score=94.10 Aligned_cols=31 Identities=61% Similarity=0.901 Sum_probs=28.2
Q ss_pred cccCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008530 292 LTYTEQEVKQWCEERRKNYPTKANINKKLTE 322 (562)
Q Consensus 292 l~~t~eeI~~WreERrKN~PT~anIe~K~~e 322 (562)
.++|++||++|||||||||||+++|++|+++
T Consensus 16 ~L~t~eeI~~W~eERrk~~PT~~~i~~k~~~ 46 (56)
T PF10453_consen 16 KLQTPEEIAKWIEERRKNYPTKANIEKKKAE 46 (56)
T ss_pred ecCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3479999999999999999999999988765
No 2
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=87.09 E-value=0.2 Score=34.61 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=19.3
Q ss_pred CCCCcceeccCCCCcccCCCCccchhh
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKEQ 406 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~ 406 (562)
.++.|+||.+.| .|++|.+|+|+|.+
T Consensus 2 k~~~C~~f~~~g-~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTG-TCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS---TTGGGSSSBSSG
T ss_pred ccccChhhccCC-ccCCCCCcCccCCC
Confidence 467899999977 67899999999963
No 3
>smart00356 ZnF_C3H1 zinc finger.
Probab=58.62 E-value=8 Score=25.44 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=17.6
Q ss_pred CCCCcceeccCCCCcccCCCCccchh
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKE 405 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~ 405 (562)
....|++|.+|. |+.|..|+|.|.
T Consensus 3 k~~~C~~~~~g~--C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGY--CPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCC--CCCCCCcCCCCc
Confidence 345799995554 558888999885
No 4
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.01 E-value=31 Score=35.14 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.0
Q ss_pred cccCHHHHHHHHHHHHhcC
Q 008530 292 LTYTEQEVKQWCEERRKNY 310 (562)
Q Consensus 292 l~~t~eeI~~WreERrKN~ 310 (562)
+...||-|++|+|++++.-
T Consensus 101 ~~~epE~IRkWkeeQ~~rl 119 (216)
T KOG4031|consen 101 LRDEPEKIRKWKEEQMKRL 119 (216)
T ss_pred cccChHHHHHHHHHHHHHH
Confidence 5678999999999998753
No 5
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=50.36 E-value=12 Score=42.64 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred cccceeeeccCCCccccccccccccccC
Q 008530 534 EQMKVYIAGKGNTNDEHVRLEEEEGEII 561 (562)
Q Consensus 534 ~~~~~~~~~~~~~~d~~~~~~~eegeii 561 (562)
-....||-+.+...+.-+++|+-||+|.
T Consensus 132 ~~np~yIpk~g~fy~hddsTe~~eg~v~ 159 (694)
T KOG4264|consen 132 VENPAYIPKTGRFYMHDDSTENREGDVN 159 (694)
T ss_pred ccCccccccccccccccccccccccccc
Confidence 3467899999999998899999999984
No 6
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=49.78 E-value=9.5 Score=38.69 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=24.8
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhhc
Q 008530 378 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQKL 408 (562)
Q Consensus 378 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k~ 408 (562)
+-+++-|.+|.+.| .|.||..|+|.|....
T Consensus 174 ~~kt~lC~~f~~tG-~C~yG~rC~F~H~~~~ 203 (332)
T KOG1677|consen 174 KYKTKLCPKFQKTG-LCKYGSRCRFIHGEPE 203 (332)
T ss_pred CCCCcCCCccccCC-CCCCCCcCeecCCCcc
Confidence 44889999999974 5779999999998753
No 7
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=41.58 E-value=11 Score=41.62 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=21.4
Q ss_pred CCCCcceeccCCCCcccCCCCccchhhhc
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKEQKL 408 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k~ 408 (562)
.-++|+||..+- ||++-.|||+|-.-+
T Consensus 139 sMkpC~ffLeg~--CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 139 SMKPCKFFLEGR--CRFGENCRFSHGLDV 165 (486)
T ss_pred hhccchHhhccc--cccCcccccccCccc
Confidence 346899998875 569999999997654
No 8
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.45 E-value=23 Score=44.17 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=9.3
Q ss_pred cccccccccccccc
Q 008530 547 NDEHVRLEEEEGEI 560 (562)
Q Consensus 547 ~d~~~~~~~eegei 560 (562)
+|+++.-|.-||||
T Consensus 1781 gdeheQDeqvegei 1794 (3015)
T KOG0943|consen 1781 GDEHEQDEQVEGEI 1794 (3015)
T ss_pred cccccccccccccc
Confidence 45666666667887
No 9
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=34.19 E-value=23 Score=45.23 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=8.3
Q ss_pred CCCCCCCcceeccCCC
Q 008530 377 TMPLNKRGRFQNNYDK 392 (562)
Q Consensus 377 k~~~~K~CKF~nrGg~ 392 (562)
+....++..|+..||.
T Consensus 59 ~~~~~~~~~~~~~g~~ 74 (2849)
T PTZ00415 59 KEGKNKKECFDKNGGI 74 (2849)
T ss_pred ccCCCcccccccCCCE
Confidence 3334455556656554
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=33.80 E-value=20 Score=39.89 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 008530 445 TFRFMAI 451 (562)
Q Consensus 445 cIRFLV~ 451 (562)
+||=|.+
T Consensus 37 ~IRkLge 43 (458)
T PF10446_consen 37 AIRKLGE 43 (458)
T ss_pred HHhhhhH
Confidence 3555543
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=31.42 E-value=42 Score=38.13 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 008530 438 DKSHLLQTFR 447 (562)
Q Consensus 438 Ern~LLQcIR 447 (562)
-|..||.-||
T Consensus 494 gR~~LmaqIR 503 (569)
T KOG3671|consen 494 GRDALMAQIR 503 (569)
T ss_pred cHHHHHHHHH
Confidence 5677899998
No 12
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=29.00 E-value=24 Score=36.64 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=20.5
Q ss_pred CCCCCcceeccCCCCcccCCC--Cccchhhhc
Q 008530 379 PLNKRGRFQNNYDKRGRYKRK--DQFSKEQKL 408 (562)
Q Consensus 379 ~~~K~CKF~nrGg~RgRcgRK--cRFsh~~k~ 408 (562)
+..--||||+..|- ||++ |||+|++..
T Consensus 204 psavycryynangi---cgkgaacrfvheptr 232 (377)
T KOG1492|consen 204 PSAVYCRYYNANGI---CGKGAACRFVHEPTR 232 (377)
T ss_pred CceeEEEEecCCCc---ccCCceeeeeccccc
Confidence 44457999998876 6666 999998753
No 13
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=28.24 E-value=69 Score=32.02 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008530 296 EQEVKQWCEERRKNYPTKANINKKLTE 322 (562)
Q Consensus 296 ~eeI~~WreERrKN~PT~anIe~K~~e 322 (562)
++-|+.|||+|.+.-=-+...++++++
T Consensus 111 ~e~ireWre~~~~~i~ekD~~e~~kk~ 137 (225)
T PF01086_consen 111 PEAIREWREERDKRIEEKDAEEEEKKE 137 (225)
T ss_dssp TTHHHHHHHHHTTTSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999876555555544433
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=27.02 E-value=2.2e+02 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=10.0
Q ss_pred cCCCcccccccccccc
Q 008530 543 KGNTNDEHVRLEEEEG 558 (562)
Q Consensus 543 ~~~~~d~~~~~~~eeg 558 (562)
+-+..++.+.++||.+
T Consensus 1001 ~~~~~k~~~~sde~~~ 1016 (1018)
T KOG2002|consen 1001 KKDRNKELNDSDEESE 1016 (1018)
T ss_pred ccccchhhcccccccc
Confidence 4455777778875443
No 15
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=26.61 E-value=2.1e+02 Score=27.13 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhCCccccC
Q 008530 337 RREQLKEILAKQAELGVEVAEI 358 (562)
Q Consensus 337 RRqqLKEVLAKQaELG~e~aEi 358 (562)
|...|.++.+.-.+.|+.+.|+
T Consensus 54 r~~kl~~~r~~m~~~Gis~~eL 75 (135)
T PRK10947 54 RTRKLQQYREMLIADGIDPNEL 75 (135)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH
Confidence 3345777777788899888886
No 16
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=25.45 E-value=1e+02 Score=27.76 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=27.5
Q ss_pred HHHHHhhcCchhhhHHHHHHHHHHHHHHHH-HHhhCCccccCCcccc
Q 008530 318 KKLTEKQSNSDVIDKEAKMRREQLKEILAK-QAELGVEVAEIPSYYL 363 (562)
Q Consensus 318 ~K~~ek~sqs~~~D~EAk~RRqqLKEVLAK-QaELG~e~aEiPs~yL 363 (562)
+|.+++....+.+.+-...+|+++.+.|.+ +...|..-..+....|
T Consensus 3 RK~~Ek~~k~eElkrlK~lK~~Ei~~kl~kik~~~G~~~~~~~~~dl 49 (101)
T PF05178_consen 3 RKEEEKQEKEEELKRLKNLKRKEIEEKLEKIKEVAGLEDIDLDEEDL 49 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHh
Confidence 344444444445566666777777777887 6677765445544444
No 17
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=1.7e+02 Score=29.73 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=20.9
Q ss_pred ccccccccccCH----HHHHHHHHHHHhcCC-ChHHHHHHH
Q 008530 285 KKRKSLALTYTE----QEVKQWCEERRKNYP-TKANINKKL 320 (562)
Q Consensus 285 ~krks~~l~~t~----eeI~~WreERrKN~P-T~anIe~K~ 320 (562)
|.|...+.+++. .|.-.|+-.=.|.-| |.+.+=.|+
T Consensus 33 ~~r~na~~itgVCqRCkEqieWk~KY~KYKpLt~akkC~kC 73 (227)
T KOG3241|consen 33 GGRFNASEITGVCQRCKEQIEWKRKYGKYKPLTEAKKCQKC 73 (227)
T ss_pred hceehhhHhhhHHHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 456656666665 577788776666666 333333333
No 18
>PF12728 HTH_17: Helix-turn-helix domain
Probab=22.39 E-value=43 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=14.2
Q ss_pred cccCHHHHHHHHHHHH
Q 008530 292 LTYTEQEVKQWCEERR 307 (562)
Q Consensus 292 l~~t~eeI~~WreERr 307 (562)
+.++.+||.+|+++||
T Consensus 36 ~~~~~~~l~~~~~~~~ 51 (51)
T PF12728_consen 36 WRIPKSDLDRWLERRR 51 (51)
T ss_pred EEEeHHHHHHHHHhCc
Confidence 6789999999999875
No 19
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=21.33 E-value=2.9e+02 Score=26.18 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhCCccccC
Q 008530 336 MRREQLKEILAKQAELGVEVAEI 358 (562)
Q Consensus 336 ~RRqqLKEVLAKQaELG~e~aEi 358 (562)
.|...|.++.+.-++.|+.+.|+
T Consensus 53 er~~~l~~i~~~~~~~Git~eeL 75 (134)
T PRK10328 53 ERQEKINTWLELMKADGINPEEL 75 (134)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHH
Confidence 34445666666678899888876
No 20
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=21.12 E-value=1.8e+02 Score=30.90 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHhhCCcc
Q 008530 310 YPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEV 355 (562)
Q Consensus 310 ~PT~anIe~K~~ek~sqs~~~D~EAk~RRqqLKEVLAKQaELG~e~ 355 (562)
||...-|.+..++-.+-.-..++-.+..+...++++++|.+.|+++
T Consensus 13 fPr~~~l~~a~~~~~~G~i~~ee~~~~~~~~i~~~i~~q~~~Gldv 58 (330)
T COG0620 13 FPRPEELRKAREKWKKGEISEEEYEEILREAIRRAIKDQEEAGLDV 58 (330)
T ss_pred CCCChhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 6666666654443222222234446677788999999999999884
Done!