Query 008530
Match_columns 562
No_of_seqs 100 out of 112
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvh_D LCB, clathrin light cha 77.6 2.4 8.2E-05 41.2 4.9 32 291-322 94-125 (205)
2 2cqe_A KIAA1064 protein; CCCH 76.7 0.89 3E-05 38.7 1.5 14 423-436 65-78 (98)
3 3lvg_D LCB, clathrin light cha 71.6 6 0.00021 37.9 5.8 29 292-320 80-108 (190)
4 1m9o_A Tristetraproline; Cys3H 70.3 2.5 8.6E-05 33.2 2.6 29 378-407 9-37 (77)
5 2d9n_A Cleavage and polyadenyl 64.7 2.9 9.8E-05 33.8 1.9 28 378-407 7-34 (77)
6 2rhk_C Cleavage and polyadenyl 60.3 3 0.0001 33.6 1.3 28 378-407 13-40 (72)
7 2cqe_A KIAA1064 protein; CCCH 54.6 5.8 0.0002 33.6 2.2 24 380-405 12-35 (98)
8 1m9o_A Tristetraproline; Cys3H 47.2 4 0.00014 32.0 0.0 27 380-407 49-75 (77)
9 3hym_A Anaphase-promoting comp 44.0 7.8 0.00027 27.5 1.0 23 286-308 3-25 (29)
10 2d9m_A Zinc finger CCCH-type d 39.7 8.3 0.00029 31.8 0.8 26 380-407 19-44 (69)
11 1xi4_J LCA, clathrin light cha 34.9 41 0.0014 27.6 4.2 18 291-308 3-20 (70)
12 1oy3_D Transcription factor in 24.6 23 0.0008 31.1 1.1 12 443-454 205-216 (282)
13 3u1l_A PRE-mRNA-splicing facto 23.8 20 0.00067 34.7 0.5 29 377-407 66-94 (240)
14 2b3g_B Cellular tumor antigen 23.5 33 0.0011 23.9 1.4 15 291-305 10-24 (28)
15 2bze_A KIAA0252 protein; human 23.4 75 0.0026 28.8 4.2 29 294-322 116-147 (153)
16 2xpi_B Anaphase-promoting comp 21.5 24 0.00081 30.0 0.5 22 286-307 4-25 (81)
17 2e5s_A Otthump00000018578; ZF- 21.3 11 0.00036 32.2 -1.7 28 378-407 17-45 (98)
No 1
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=77.63 E-value=2.4 Score=41.17 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=23.8
Q ss_pred ccccCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008530 291 ALTYTEQEVKQWCEERRKNYPTKANINKKLTE 322 (562)
Q Consensus 291 ~l~~t~eeI~~WreERrKN~PT~anIe~K~~e 322 (562)
.+..-||-|++|||||+|.-=-+.-.++++++
T Consensus 94 ~leeEPEsIRkWREEq~kRLeekDa~sekkk~ 125 (205)
T 3lvh_D 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQ 125 (205)
T ss_dssp TTTBSTTHHHHHHHHHTTTSTHHHHHHHHHHH
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999987655555554433
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=76.74 E-value=0.89 Score=38.66 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHHHH
Q 008530 423 KPTLLQKLLSADVK 436 (562)
Q Consensus 423 rpTLLqkLL~~DIr 436 (562)
.+.+|.++|..|.+
T Consensus 65 ~~~~l~~~l~~~~~ 78 (98)
T 2cqe_A 65 TRELLDKMLADDAE 78 (98)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhHHhhhcchhhh
Confidence 45677777666543
No 3
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=71.55 E-value=6 Score=37.92 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=21.6
Q ss_pred cccCHHHHHHHHHHHHhcCCChHHHHHHH
Q 008530 292 LTYTEQEVKQWCEERRKNYPTKANINKKL 320 (562)
Q Consensus 292 l~~t~eeI~~WreERrKN~PT~anIe~K~ 320 (562)
+..-||-|+.|||||++..=-+.-.++++
T Consensus 80 LeEEPEsIRKWREEQkkRLEeRDA~Sekk 108 (190)
T 3lvg_D 80 LTQEPESIRKWREEQRKRLQELDAASKVM 108 (190)
T ss_dssp TTTSTTHHHHHHHHHTTTSTHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999998875544444333
No 4
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=70.26 E-value=2.5 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008530 378 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 378 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
+-.++.|+||.+.| .|++|.+|+|+|...
T Consensus 9 ~~kt~~C~~f~~~G-~C~~G~~C~f~H~~~ 37 (77)
T 1m9o_A 9 RYKTELCRTYSESG-RCRYGAKCQFAHGLG 37 (77)
T ss_dssp CCCSCCCSGGGGTS-CCTTTTTCSSCSSSC
T ss_pred CccchhCHHhhhCC-CcCCCCCccCCCCCh
Confidence 34678999997544 567999999999875
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.75 E-value=2.9 Score=33.77 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=19.2
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008530 378 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 378 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
...+..||||.+|. |+.|..|+|+|+..
T Consensus 7 ~~k~~~C~~fl~G~--C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 7 GEKTVVCKHWLRGL--CKKGDQCEFLHEYD 34 (77)
T ss_dssp CCTTSBCHHHHTTC--CSCTTSSSSBCSCC
T ss_pred CCcceeCHhHccCc--CCCCCCCCCccccc
Confidence 34566788888844 44777788888754
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=60.30 E-value=3 Score=33.57 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=21.8
Q ss_pred CCCCCCcceeccCCCCcccCCCCccchhhh
Q 008530 378 MPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 378 ~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
......||||.+|. |+.|..|+|+|+..
T Consensus 13 ~~k~~vCk~fl~G~--C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 13 GEKTVVCKHWLRGL--CKKGDQCEFLHEYD 40 (72)
T ss_dssp CCCCSBCHHHHTTC--CCCGGGSSSBCSCC
T ss_pred CCcCeeCHHHhcCC--CCCCCCCCCccccc
Confidence 45677999999955 45888899999854
No 7
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=54.61 E-value=5.8 Score=33.63 Aligned_cols=24 Identities=4% Similarity=-0.151 Sum_probs=15.0
Q ss_pred CCCCcceeccCCCCcccCCCCccchh
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKE 405 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~ 405 (562)
.+..|+||.+|. |+.|.+|+|+|.
T Consensus 12 k~~lC~~f~~G~--C~~G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGF--CARAENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTC--CSCSTTCSSBSS
T ss_pred CCccCcccccCc--CCCCCCCCCCCC
Confidence 455677775443 446677777776
No 8
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=47.15 E-value=4 Score=32.03 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCcceeccCCCCcccCCCCccchhhh
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
.++.|++|...| .|++|.+|+|.|...
T Consensus 49 k~~~C~~f~~~G-~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 49 KTELCHKFKLQG-RCPYGSRCHFIHNPT 75 (77)
T ss_dssp ----------------------------
T ss_pred cCCcccchhhCc-CCCCcCcCCCCCCCC
Confidence 467898665444 466999999999764
No 9
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=43.96 E-value=7.8 Score=27.51 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred cccccccccCHHHHHHHHHHHHh
Q 008530 286 KRKSLALTYTEQEVKQWCEERRK 308 (562)
Q Consensus 286 krks~~l~~t~eeI~~WreERrK 308 (562)
+|+|..|.-+.+||++|-+.|+.
T Consensus 3 RRkPT~I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 3 RRKPTRLELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCCCCCCCSGGGHHHHHHHHH
T ss_pred CCCCcEEEecHHHHHHHHHHHHH
Confidence 68899999999999999988874
No 10
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.71 E-value=8.3 Score=31.79 Aligned_cols=26 Identities=8% Similarity=-0.189 Sum_probs=20.6
Q ss_pred CCCCcceeccCCCCcccCCCCccchhhh
Q 008530 380 LNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 380 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
..+-|+.|.+| .|++|.+|.|+|-..
T Consensus 19 k~~LC~~~~~G--~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNG--TCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHS--CCSSCSSCSSBSSHH
T ss_pred CcccCcccCcC--CCCCCCccCCcCCHH
Confidence 44889999666 567999999998753
No 11
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=34.94 E-value=41 Score=27.63 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=14.3
Q ss_pred ccccCHHHHHHHHHHHHh
Q 008530 291 ALTYTEQEVKQWCEERRK 308 (562)
Q Consensus 291 ~l~~t~eeI~~WreERrK 308 (562)
++-.-|+-|+.||++|.+
T Consensus 3 ~~~~EpE~Ir~WRE~~~~ 20 (70)
T 1xi4_J 3 RLQSEPESIRKWREEQTE 20 (70)
T ss_pred CcccCcHHHHHHHHHHHH
Confidence 344567899999999975
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=24.56 E-value=23 Score=31.13 Aligned_cols=12 Identities=0% Similarity=0.022 Sum_probs=8.8
Q ss_pred HHHHHHHHHcCC
Q 008530 443 LQTFRFMAINSF 454 (562)
Q Consensus 443 LQcIRFLV~NnF 454 (562)
+.+|+||++++.
T Consensus 205 ~~~v~~Ll~~ga 216 (282)
T 1oy3_D 205 ASVLELLLKAGA 216 (282)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 467888888764
No 13
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=23.80 E-value=20 Score=34.73 Aligned_cols=29 Identities=7% Similarity=-0.287 Sum_probs=22.6
Q ss_pred CCCCCCCcceeccCCCCcccCCCCccchhhh
Q 008530 377 TMPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 407 (562)
Q Consensus 377 k~~~~K~CKF~nrGg~RgRcgRKcRFsh~~k 407 (562)
+......|-||.+|.| ++|..|.+.|+.+
T Consensus 66 ~~~~~~~C~ffakG~C--~~G~~C~y~H~lP 94 (240)
T 3u1l_A 66 NDGQLFFCLFFAKGMC--CLGPKCEYLHHIP 94 (240)
T ss_dssp HTTCCSBCHHHHTTCC--SCGGGCSSBBSCC
T ss_pred cCCCCeEcCccccCCC--CCCCCCCccCCCC
Confidence 3456779999999665 5999999988743
No 14
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=23.48 E-value=33 Score=23.93 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=12.6
Q ss_pred ccccCHHHHHHHHHH
Q 008530 291 ALTYTEQEVKQWCEE 305 (562)
Q Consensus 291 ~l~~t~eeI~~WreE 305 (562)
.++-+|.||.+|..+
T Consensus 10 dlmlspddi~qw~s~ 24 (28)
T 2b3g_B 10 DLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGGCCHHHHHHHHHC
T ss_pred hhhcChHHHHHHhhc
Confidence 478899999999854
No 15
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1
Probab=23.43 E-value=75 Score=28.82 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=25.2
Q ss_pred cCHHHHHHHHHHHHh---cCCChHHHHHHHHH
Q 008530 294 YTEQEVKQWCEERRK---NYPTKANINKKLTE 322 (562)
Q Consensus 294 ~t~eeI~~WreERrK---N~PT~anIe~K~~e 322 (562)
-|++|..+|++.=++ .+||..-|++|.++
T Consensus 116 fte~Ef~~w~~~~~~~~~~~PT~~~v~~K~~~ 147 (153)
T 2bze_A 116 FTESEFMKWKEAMFSAGMQLPTLDEINKKELS 147 (153)
T ss_dssp CCHHHHHHHHHHHHHHTCCCCBHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 368999999988777 79999999999865
No 16
>2xpi_B Anaphase-promoting complex subunit HCN1 HCN1/CDC2 cyclosome/APC complex protein HCN1,...; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=21.48 E-value=24 Score=30.03 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.9
Q ss_pred cccccccccCHHHHHHHHHHHH
Q 008530 286 KRKSLALTYTEQEVKQWCEERR 307 (562)
Q Consensus 286 krks~~l~~t~eeI~~WreERr 307 (562)
+|++..|.-|+|||.+|-++|-
T Consensus 4 RR~PTaI~iT~EDI~ayEd~rl 25 (81)
T 2xpi_B 4 RRNPTAIQITAEDVLAYDEEKL 25 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHCCC-
T ss_pred ccCCceEEeCHHHHHHHHHHHH
Confidence 6889999999999999987753
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=11 Score=32.21 Aligned_cols=28 Identities=7% Similarity=-0.121 Sum_probs=20.1
Q ss_pred CCCCCCcceeccCCCCcccCC-CCccchhhh
Q 008530 378 MPLNKRGRFQNNYDKRGRYKR-KDQFSKEQK 407 (562)
Q Consensus 378 ~~~~K~CKF~nrGg~RgRcgR-KcRFsh~~k 407 (562)
.+....||||.+|.| ..|. .|+|+|...
T Consensus 17 ~~k~~VCr~FlrG~C--~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 17 TDKLEVCREFQRGNC--ARGETDCRFAHPAD 45 (98)
T ss_dssp SSEEEBCSHHHHTCC--SSHHHHCSSBCCSS
T ss_pred hhhhhhhHHHhcCcC--CCCCCCCCCcCCch
Confidence 345568999999543 3555 599999975
Done!