BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008531
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/561 (80%), Positives = 499/561 (88%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERMITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ML+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+MI+ EAPDPCTLETFLGR+PMVFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDMIRLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE EML RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ AMNHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHL 562
FH EIEELLYSDVENKEHL
Sbjct: 544 TKFHSEIEELLYSDVENKEHL 564
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/561 (79%), Positives = 493/561 (87%)
Query: 2 AERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRKH 61
AER +TRVHS RERL+ETL + RNE+LALLSR+E KGKGILQ +Q+IAEFE++ E+ RK
Sbjct: 4 AERXITRVHSQRERLNETLVSERNEVLALLSRVEAKGKGILQQNQIIAEFEALPEQTRKK 63
Query: 62 LTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEE 121
L G F ++L++TQEAIVLPPWVALAVRPRPGVWEY+RVN+H +LHFKEE
Sbjct: 64 LEGGPFFDLLKSTQEAIVLPPWVALAVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEE 123
Query: 122 LVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181
LVDG NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+F
Sbjct: 124 LVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKF 183
Query: 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWG 241
LR+H H+GKN+ L+++IQNLN+LQH LRKAEEYL + ET + E +F+EIGLERGWG
Sbjct: 184 LRLHSHQGKNLXLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWG 243
Query: 242 DTAERALEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGG 301
D AER L+ I+ EAPDPCTLETFLGR+P VFNVVIL+PHGYFAQD+VLGYPDTGG
Sbjct: 244 DNAERVLDXIRLLLDLLEAPDPCTLETFLGRVPXVFNVVILSPHGYFAQDNVLGYPDTGG 303
Query: 302 QVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSD 361
QVVYILDQVRALE E L RIKQQGL+I P+ILI+TRLLPDAVGTTCG+RLE+VY ++Y D
Sbjct: 304 QVVYILDQVRALEIEXLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCD 363
Query: 362 ILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVAS 421
ILRVPFRTEKG+VRKWISRFEVWPYLETYTED AVE++KEL GKPDLIIGNYSDGN+VAS
Sbjct: 364 ILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELNGKPDLIIGNYSDGNLVAS 423
Query: 422 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481
LLAHKLGVTQCTIAHALEKTKYPDSDIYWK LDDKYHFSCQFTAD+ A NHTDFIITSTF
Sbjct: 424 LLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAXNHTDFIITSTF 483
Query: 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRL 541
QEIAGSK+TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD SIYFPYTEEKRRL
Sbjct: 484 QEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADXSIYFPYTEEKRRL 543
Query: 542 KSFHPEIEELLYSDVENKEHL 562
FH EIEELLYSDVENKEHL
Sbjct: 544 TKFHSEIEELLYSDVENKEHL 564
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 37/258 (14%)
Query: 279 VVILTPHGYFAQDDVLG--YPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIIT 336
V L P G F D +PD GGQ+VY+ E+ L + + G+ Q+ IIT
Sbjct: 10 VAFLNPQGNFDPADSYWTEHPDFGGQLVYV--------KEVSLALAEMGV----QVDIIT 57
Query: 337 RLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAV 396
R + D ++ T I+R+PF +K ++ + E+WPYL Y + +
Sbjct: 58 RRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDK-----FLPKEELWPYLHEYVNKI-I 111
Query: 397 EIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDI---YWKNL 453
+E P ++ +Y DG + LL + G+ H+L K ++ +K +
Sbjct: 112 NFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEM 171
Query: 454 DDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 513
D+++ F + A+ + M++ D II ST QE GQY SH LYR ++
Sbjct: 172 DERFKFHRRIIAERLTMSYADKIIVSTSQE------RFGQY-SHD------LYRGAVNVE 218
Query: 514 VFDPKFNIVSPGADMSIY 531
D KF+++ PG + ++
Sbjct: 219 D-DDKFSVIPPGVNTRVF 235
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 241 GDTAERA--LEMIQXXXXXXEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPD 298
GD AE+A L + Q E +LE + + + V+ P G +G
Sbjct: 423 GDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIG--- 479
Query: 299 TGGQVVYIL---DQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 355
TG Y++ A+ L++ K+ G D+ P I + ++
Sbjct: 480 TGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI---------------- 523
Query: 356 GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE 392
Y+D R + TEKG+V + + EV PY++ +TE
Sbjct: 524 -QMYTDKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTE 559
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 420 ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM 470
A L C +A+ + +T +PD+ + +LDD Y+F Q + IA+
Sbjct: 398 ADFLVCTFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAI 448
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 136 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 195
Query: 216 TTVVPETPFSELALRFQEIGLERGW 240
PE F+E L + GL GW
Sbjct: 196 PVCTPEKDFAEHLLIPRTRGLLSGW 220
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 157 VEFLNRHLSAKLFHDKESMHPLL-EFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYL 215
L+R+++ K + ++ S PL+ + VH H + + +L L+ ++ L
Sbjct: 95 CSLLHRNITVKTYFNRTSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGL 154
Query: 216 TTVVPETPFSELALRFQEIGLERGW 240
PE F+E L + GL GW
Sbjct: 155 PVCTPEKDFAEHLLIPRTRGLLSGW 179
>pdb|2B0L|A Chain A, C-Terminal Dna Binding Domain Of Transcriptional
Pleiotropic Repressor Cody.
pdb|2B0L|B Chain B, C-Terminal Dna Binding Domain Of Transcriptional
Pleiotropic Repressor Cody.
pdb|2B0L|C Chain C, C-Terminal Dna Binding Domain Of Transcriptional
Pleiotropic Repressor Cody
Length = 102
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 17/71 (23%)
Query: 371 KGVVRKWISRFEVWPYLETYTEDVAVE-IAKELQGKPDLIIGNYSDGNIVASLLAHKLGV 429
K VV+ IS +Y+E A+E I +EL G ++G +VAS +A ++G+
Sbjct: 12 KAVVQMAISSL-------SYSELEAIEHIFEELDG---------NEGLLVASKIADRVGI 55
Query: 430 TQCTIAHALEK 440
T+ I +AL K
Sbjct: 56 TRSVIVNALRK 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,018,143
Number of Sequences: 62578
Number of extensions: 719702
Number of successful extensions: 1716
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 11
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)