Query 008531
Match_columns 562
No_of_seqs 268 out of 944
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 13:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00862 Sucrose_synth: Sucros 100.0 2E-195 4E-200 1542.4 31.5 548 7-554 1-550 (550)
2 PLN00142 sucrose synthase 100.0 3E-171 7E-176 1434.6 44.6 561 1-561 2-564 (815)
3 TIGR02470 sucr_synth sucrose s 100.0 3E-164 6E-169 1377.0 47.4 538 24-561 1-541 (784)
4 TIGR02468 sucrsPsyn_pln sucros 100.0 4.9E-42 1.1E-46 394.9 23.1 239 276-537 169-447 (1050)
5 KOG0853 Glycosyltransferase [C 100.0 3E-39 6.6E-44 347.9 7.2 310 193-561 1-311 (495)
6 TIGR02472 sucr_P_syn_N sucrose 100.0 4.5E-27 9.8E-32 249.9 22.7 221 277-535 1-227 (439)
7 PRK00654 glgA glycogen synthas 99.8 1.5E-19 3.2E-24 194.3 16.9 220 277-535 1-248 (466)
8 cd03800 GT1_Sucrose_synthase T 99.8 1.1E-17 2.4E-22 169.8 19.1 206 278-536 1-206 (398)
9 TIGR03449 mycothiol_MshA UDP-N 99.8 1.6E-17 3.6E-22 172.0 17.5 206 279-536 1-206 (405)
10 TIGR02095 glgA glycogen/starch 99.7 1.3E-16 2.8E-21 171.2 18.6 224 277-535 1-256 (473)
11 PLN02316 synthase/transferase 99.7 5.1E-16 1.1E-20 180.9 21.0 193 277-535 588-805 (1036)
12 cd03791 GT1_Glycogen_synthase_ 99.6 4.8E-15 1E-19 157.9 18.2 226 278-536 1-262 (476)
13 PF13579 Glyco_trans_4_4: Glyc 99.6 2.1E-15 4.6E-20 133.1 11.4 160 300-525 1-160 (160)
14 PRK14098 glycogen synthase; Pr 99.6 9.1E-15 2E-19 159.5 17.5 232 271-535 2-272 (489)
15 PRK10307 putative glycosyl tra 99.5 1.3E-13 2.9E-18 144.3 17.8 202 277-535 1-212 (412)
16 PLN02939 transferase, transfer 99.5 1.9E-13 4.2E-18 157.8 20.2 246 253-535 454-743 (977)
17 cd03796 GT1_PIG-A_like This fa 99.5 5.4E-13 1.2E-17 139.5 16.3 184 278-535 1-186 (398)
18 TIGR02149 glgA_Coryne glycogen 99.5 2.3E-12 4.9E-17 132.0 17.7 187 277-536 1-188 (388)
19 PRK14099 glycogen synthase; Pr 99.4 2.5E-12 5.4E-17 140.4 18.2 230 276-536 3-261 (485)
20 PLN02871 UDP-sulfoquinovose:DA 99.4 5.6E-12 1.2E-16 135.4 17.5 187 277-535 59-247 (465)
21 PF13439 Glyco_transf_4: Glyco 99.4 2.6E-12 5.7E-17 115.2 12.4 168 297-532 9-177 (177)
22 cd04962 GT1_like_5 This family 99.4 8.7E-12 1.9E-16 126.2 17.4 180 277-536 1-184 (371)
23 cd03793 GT1_Glycogen_synthase_ 99.3 1E-11 2.2E-16 137.9 14.6 110 403-535 146-266 (590)
24 PF08323 Glyco_transf_5: Starc 99.3 1E-11 2.2E-16 124.3 10.8 180 278-484 1-227 (245)
25 cd03818 GT1_ExpC_like This fam 99.3 2E-10 4.3E-15 120.0 18.0 171 306-536 13-196 (396)
26 cd04955 GT1_like_6 This family 99.3 3.1E-10 6.7E-15 113.8 18.5 177 278-533 1-180 (363)
27 cd03794 GT1_wbuB_like This fam 99.2 1.1E-09 2.4E-14 107.7 17.4 204 278-535 1-206 (394)
28 PRK00726 murG undecaprenyldiph 99.2 6.9E-10 1.5E-14 114.1 16.6 169 277-534 2-171 (357)
29 cd03802 GT1_AviGT4_like This f 99.2 1.1E-09 2.5E-14 108.8 17.0 167 277-534 1-167 (335)
30 cd03819 GT1_WavL_like This fam 99.1 1.2E-09 2.5E-14 109.6 15.1 159 298-535 8-166 (355)
31 PRK15427 colanic acid biosynth 99.1 2.3E-09 5E-14 114.1 17.3 97 403-534 116-214 (406)
32 cd05844 GT1_like_7 Glycosyltra 99.1 1.3E-09 2.8E-14 110.3 12.6 102 404-534 81-182 (367)
33 cd03817 GT1_UGDG_like This fam 99.1 3.1E-09 6.8E-14 104.6 14.6 187 278-536 1-189 (374)
34 cd03805 GT1_ALG2_like This fam 99.0 2.6E-09 5.6E-14 109.8 14.4 194 277-535 1-197 (392)
35 cd03785 GT1_MurG MurG is an N- 99.0 6.3E-09 1.4E-13 105.7 16.5 155 298-533 8-168 (350)
36 cd03812 GT1_CapH_like This fam 99.0 7E-09 1.5E-13 104.1 15.6 176 278-535 1-177 (358)
37 PF13477 Glyco_trans_4_2: Glyc 99.0 1.1E-08 2.3E-13 91.4 14.8 127 304-480 11-139 (139)
38 cd03816 GT1_ALG1_like This fam 99.0 2.1E-08 4.5E-13 106.8 18.0 189 277-536 4-201 (415)
39 cd03814 GT1_like_2 This family 99.0 1.3E-08 2.8E-13 100.7 15.2 180 278-535 1-183 (364)
40 PRK15484 lipopolysaccharide 1, 98.9 1.3E-08 2.8E-13 107.0 14.6 179 275-536 1-180 (380)
41 TIGR03088 stp2 sugar transfera 98.9 1.6E-08 3.4E-13 103.9 15.0 175 278-535 3-178 (374)
42 cd03795 GT1_like_4 This family 98.9 4.3E-08 9.3E-13 97.9 16.3 177 278-535 1-178 (357)
43 cd03821 GT1_Bme6_like This fam 98.9 6.5E-08 1.4E-12 95.0 17.0 187 278-535 1-189 (375)
44 cd03798 GT1_wlbH_like This fam 98.9 1.2E-07 2.6E-12 92.5 18.5 177 299-536 13-190 (377)
45 cd03799 GT1_amsK_like This is 98.9 6.2E-08 1.4E-12 96.7 16.5 94 403-534 77-171 (355)
46 cd03825 GT1_wcfI_like This fam 98.9 2.5E-08 5.5E-13 99.9 13.7 162 277-537 1-179 (365)
47 cd03801 GT1_YqgM_like This fam 98.9 1.1E-07 2.5E-12 91.9 17.8 185 278-534 1-185 (374)
48 TIGR01133 murG undecaprenyldip 98.9 6E-08 1.3E-12 98.5 16.4 135 299-484 10-147 (348)
49 cd03823 GT1_ExpE7_like This fa 98.9 7.2E-08 1.6E-12 94.9 15.8 182 278-535 1-184 (359)
50 PLN02846 digalactosyldiacylgly 98.9 3.9E-08 8.4E-13 107.6 15.1 132 276-438 4-151 (462)
51 PRK15179 Vi polysaccharide bio 98.8 4.5E-08 9.7E-13 111.8 16.0 240 230-534 238-499 (694)
52 PLN02275 transferase, transfer 98.8 1.8E-07 4E-12 97.9 17.1 180 297-535 13-203 (371)
53 cd04951 GT1_WbdM_like This fam 98.8 2.1E-07 4.6E-12 93.1 16.4 171 278-535 1-172 (360)
54 cd03811 GT1_WabH_like This fam 98.8 1.5E-07 3.4E-12 91.1 14.8 177 278-536 1-178 (353)
55 cd03807 GT1_WbnK_like This fam 98.8 1.5E-07 3.3E-12 92.1 14.6 166 299-535 11-177 (365)
56 cd03792 GT1_Trehalose_phosphor 98.7 1.2E-07 2.6E-12 98.1 13.1 136 298-482 10-145 (372)
57 PRK09922 UDP-D-galactose:(gluc 98.7 1E-07 2.3E-12 98.6 12.6 167 277-532 1-171 (359)
58 KOG1111 N-acetylglucosaminyltr 98.7 2.6E-08 5.7E-13 105.0 8.0 185 277-536 1-188 (426)
59 cd03809 GT1_mtfB_like This fam 98.7 1.8E-07 3.8E-12 92.9 12.8 182 278-535 1-182 (365)
60 cd03808 GT1_cap1E_like This fa 98.7 9.4E-07 2E-11 86.1 16.5 171 299-535 9-181 (359)
61 PRK15490 Vi polysaccharide bio 98.7 2.6E-07 5.6E-12 103.2 13.8 205 295-535 169-380 (578)
62 cd03822 GT1_ecORF704_like This 98.7 1.1E-06 2.3E-11 87.4 16.9 167 278-534 1-173 (366)
63 PF09314 DUF1972: Domain of un 98.6 2.1E-06 4.5E-11 83.9 17.6 178 277-527 2-185 (185)
64 cd03820 GT1_amsD_like This fam 98.6 1.3E-06 2.8E-11 84.7 16.2 172 278-534 1-173 (348)
65 TIGR03087 stp1 sugar transfera 98.6 6.8E-08 1.5E-12 101.3 7.1 194 296-535 11-214 (397)
66 COG0297 GlgA Glycogen synthase 98.6 3.7E-07 7.9E-12 100.6 12.4 227 277-536 1-260 (487)
67 PRK10125 putative glycosyl tra 98.3 6.5E-06 1.4E-10 88.2 14.3 37 403-439 92-137 (405)
68 cd03813 GT1_like_3 This family 98.3 9.9E-07 2.2E-11 95.7 6.7 109 404-535 172-285 (475)
69 cd03806 GT1_ALG11_like This fa 98.1 6.7E-05 1.4E-09 80.5 15.8 192 298-534 12-229 (419)
70 PRK13609 diacylglycerol glucos 98.1 8.8E-06 1.9E-10 84.8 8.2 65 393-484 95-159 (380)
71 PF12000 Glyco_trans_4_3: Gkyc 98.0 6.8E-05 1.5E-09 72.6 11.2 156 323-532 1-171 (171)
72 cd03804 GT1_wbaZ_like This fam 97.7 7.1E-05 1.5E-09 76.4 7.7 105 403-535 81-192 (351)
73 PLN02501 digalactosyldiacylgly 97.5 0.00027 5.9E-09 81.1 9.4 43 393-439 425-470 (794)
74 TIGR00236 wecB UDP-N-acetylglu 97.5 0.0004 8.8E-09 72.2 9.7 102 389-528 73-176 (365)
75 cd03786 GT1_UDP-GlcNAc_2-Epime 97.5 0.0019 4.1E-08 66.3 13.4 101 391-531 77-179 (363)
76 PRK05749 3-deoxy-D-manno-octul 97.4 0.0031 6.6E-08 67.2 13.9 68 404-485 123-191 (425)
77 PF05693 Glycogen_syn: Glycoge 97.2 0.0017 3.6E-08 73.5 10.8 126 406-555 144-285 (633)
78 cd04946 GT1_AmsK_like This fam 97.1 0.0018 3.9E-08 69.1 9.3 98 403-534 125-224 (407)
79 cd01635 Glycosyltransferase_GT 97.0 0.0063 1.4E-07 56.2 10.1 37 404-440 50-87 (229)
80 PRK12446 undecaprenyldiphospho 96.9 0.049 1.1E-06 57.7 17.3 107 298-433 10-119 (352)
81 PLN02605 monogalactosyldiacylg 96.8 0.0037 8.1E-08 66.0 8.2 85 404-533 99-189 (382)
82 PHA01630 putative group 1 glyc 96.4 0.0071 1.5E-07 63.6 7.0 84 411-535 52-136 (331)
83 TIGR02094 more_P_ylases alpha- 96.4 0.0073 1.6E-07 68.8 7.3 130 391-535 148-311 (601)
84 cd03784 GT1_Gtf_like This fami 96.3 0.016 3.5E-07 60.8 9.3 34 403-438 102-135 (401)
85 PRK00025 lpxB lipid-A-disaccha 96.3 0.019 4.2E-07 59.7 9.8 63 403-484 83-146 (380)
86 TIGR02918 accessory Sec system 96.3 0.015 3.3E-07 64.6 9.2 103 403-533 209-313 (500)
87 PF08288 PIGA: PIGA (GPI ancho 96.3 0.017 3.8E-07 50.7 7.3 72 357-439 13-86 (90)
88 PLN02949 transferase, transfer 96.2 0.1 2.3E-06 57.6 15.2 201 277-531 34-257 (463)
89 cd04949 GT1_gtfA_like This fam 96.2 0.034 7.4E-07 57.2 10.4 99 404-534 98-197 (372)
90 cd04950 GT1_like_1 Glycosyltra 95.5 0.44 9.5E-06 50.2 15.6 92 403-535 100-191 (373)
91 PRK09814 beta-1,6-galactofuran 95.5 0.11 2.4E-06 54.1 10.8 69 404-485 62-136 (333)
92 TIGR00661 MJ1255 conserved hyp 95.2 0.073 1.6E-06 55.0 8.4 32 403-437 91-122 (321)
93 PF13528 Glyco_trans_1_3: Glyc 94.7 0.15 3.2E-06 51.7 9.0 36 403-441 92-127 (318)
94 cd04299 GT1_Glycogen_Phosphory 94.7 0.078 1.7E-06 62.3 7.8 125 393-532 237-397 (778)
95 PRK13608 diacylglycerol glucos 94.6 0.1 2.3E-06 55.5 7.7 88 393-529 95-182 (391)
96 TIGR00215 lpxB lipid-A-disacch 94.2 0.3 6.4E-06 52.3 10.2 73 391-485 78-151 (385)
97 TIGR01426 MGT glycosyltransfer 92.9 0.75 1.6E-05 48.6 10.6 112 300-437 6-122 (392)
98 cd03788 GT1_TPS Trehalose-6-Ph 92.6 0.39 8.4E-06 52.8 8.2 111 405-534 131-244 (460)
99 PF11997 DUF3492: Domain of un 92.4 0.13 2.9E-06 53.0 4.0 77 405-482 172-255 (268)
100 COG0707 MurG UDP-N-acetylgluco 90.8 2.5 5.4E-05 45.5 11.6 111 298-435 9-121 (357)
101 PLN02448 UDP-glycosyltransfera 90.6 3.7 8E-05 45.3 13.1 118 277-432 11-133 (459)
102 PF04007 DUF354: Protein of un 90.3 2.6 5.5E-05 45.2 11.2 32 403-437 81-112 (335)
103 TIGR02400 trehalose_OtsA alpha 87.4 2.3 5E-05 47.0 8.7 125 391-534 114-239 (456)
104 PF03033 Glyco_transf_28: Glyc 85.3 1.4 3.1E-05 39.2 4.8 111 299-437 8-130 (139)
105 PLN02208 glycosyltransferase f 83.8 18 0.00039 40.1 13.4 118 277-432 5-131 (442)
106 PLN00414 glycosyltransferase f 83.4 23 0.0005 39.3 14.0 124 276-438 4-136 (446)
107 KOG3742 Glycogen synthase [Car 81.0 1.1 2.4E-05 49.8 2.7 106 405-534 172-291 (692)
108 PLN02554 UDP-glycosyltransfera 78.7 32 0.00069 38.4 13.2 126 275-432 1-137 (481)
109 PLN03007 UDP-glucosyltransfera 77.7 36 0.00079 37.9 13.3 37 277-338 6-42 (482)
110 PF01975 SurE: Survival protei 74.7 31 0.00068 34.3 10.6 39 277-341 1-39 (196)
111 PLN02210 UDP-glucosyl transfer 73.0 41 0.00089 37.4 12.1 118 276-432 8-128 (456)
112 PF08660 Alg14: Oligosaccharid 72.1 18 0.00039 35.0 8.0 146 299-484 7-158 (170)
113 PLN02670 transferase, transfer 67.5 73 0.0016 35.8 12.6 120 277-432 7-135 (472)
114 PLN02992 coniferyl-alcohol glu 67.3 61 0.0013 36.5 12.0 124 278-438 7-134 (481)
115 PHA03392 egt ecdysteroid UDP-g 67.1 42 0.00091 37.8 10.7 30 403-434 134-164 (507)
116 PLN02562 UDP-glycosyltransfera 66.3 70 0.0015 35.5 12.1 119 278-438 8-133 (448)
117 PLN02764 glycosyltransferase f 66.1 95 0.0021 34.8 13.0 123 277-438 6-137 (453)
118 PLN02863 UDP-glucoronosyl/UDP- 65.8 95 0.0021 34.8 13.1 121 277-432 10-139 (477)
119 PLN02173 UDP-glucosyl transfer 63.9 98 0.0021 34.5 12.7 118 277-432 6-129 (449)
120 PF05728 UPF0227: Uncharacteri 60.8 93 0.002 30.6 10.6 32 407-439 61-92 (187)
121 COG1647 Esterase/lipase [Gener 59.2 94 0.002 32.3 10.4 43 391-435 72-114 (243)
122 PLN02534 UDP-glycosyltransfera 57.6 2E+02 0.0043 32.6 13.8 128 277-436 9-147 (491)
123 PLN03015 UDP-glucosyl transfer 57.2 1.2E+02 0.0025 34.3 11.8 120 300-437 14-137 (470)
124 PF00205 TPP_enzyme_M: Thiamin 56.2 45 0.00098 30.1 7.1 80 393-480 3-85 (137)
125 PHA01633 putative glycosyl tra 55.0 16 0.00034 39.2 4.4 43 469-535 89-131 (335)
126 TIGR03568 NeuC_NnaA UDP-N-acet 53.4 39 0.00085 36.1 7.1 48 387-437 78-126 (365)
127 PLN03063 alpha,alpha-trehalose 50.9 53 0.0012 39.2 8.3 132 384-534 127-259 (797)
128 PRK02122 glucosamine-6-phospha 49.6 59 0.0013 38.1 8.3 74 206-286 291-379 (652)
129 PLN02410 UDP-glucoronosyl/UDP- 49.6 2.5E+02 0.0053 31.4 12.8 117 277-433 8-131 (451)
130 PLN02555 limonoid glucosyltran 49.3 2.7E+02 0.0058 31.5 13.1 28 299-338 17-44 (480)
131 PF06925 MGDG_synth: Monogalac 49.3 84 0.0018 29.6 8.0 70 390-485 77-150 (169)
132 PF04413 Glycos_transf_N: 3-De 45.8 1.8E+02 0.0039 28.4 9.9 66 404-485 94-162 (186)
133 PF02350 Epimerase_2: UDP-N-ac 45.1 46 0.001 35.5 6.1 77 393-485 58-135 (346)
134 PRK13932 stationary phase surv 45.0 3.9E+02 0.0084 28.0 12.9 34 403-436 89-133 (257)
135 PRK14501 putative bifunctional 44.4 72 0.0016 37.5 8.0 112 405-534 133-245 (726)
136 PRK10017 colanic acid biosynth 43.0 3.8E+02 0.0083 29.8 12.9 42 421-478 141-182 (426)
137 KOG2941 Beta-1,4-mannosyltrans 42.3 5E+02 0.011 29.0 13.1 151 305-494 28-188 (444)
138 PRK13935 stationary phase surv 42.1 4.2E+02 0.0092 27.6 12.8 34 403-436 84-128 (253)
139 PF12038 DUF3524: Domain of un 42.1 1.9E+02 0.0041 28.5 9.2 106 404-526 58-168 (168)
140 COG0496 SurE Predicted acid ph 41.0 3.5E+02 0.0077 28.3 11.5 114 277-437 1-126 (252)
141 TIGR03492 conserved hypothetic 40.7 52 0.0011 35.7 5.7 27 404-433 92-118 (396)
142 PF01012 ETF: Electron transfe 40.5 2E+02 0.0043 26.8 9.0 105 304-439 18-125 (164)
143 PLN02152 indole-3-acetate beta 40.2 3E+02 0.0064 30.9 11.6 125 278-437 5-135 (455)
144 PRK04940 hypothetical protein; 38.9 1.1E+02 0.0024 30.3 7.2 87 405-495 60-148 (180)
145 PRK13933 stationary phase surv 37.7 4.9E+02 0.011 27.1 12.9 33 403-435 85-128 (253)
146 PRK12560 adenine phosphoribosy 37.7 99 0.0021 30.3 6.7 32 403-434 49-80 (187)
147 PRK09259 putative oxalyl-CoA d 37.1 1.4E+02 0.003 33.9 8.6 73 393-480 205-280 (569)
148 TIGR01090 apt adenine phosphor 36.6 87 0.0019 29.9 5.9 32 404-435 45-76 (169)
149 COG2120 Uncharacterized protei 35.3 1.4E+02 0.0031 30.3 7.5 28 404-431 108-145 (237)
150 PLN02293 adenine phosphoribosy 35.3 1E+02 0.0022 30.4 6.3 31 404-434 61-91 (187)
151 COG2236 Predicted phosphoribos 34.6 96 0.0021 31.1 6.0 54 384-438 9-65 (192)
152 PF00156 Pribosyltran: Phospho 33.3 1.6E+02 0.0034 25.6 6.7 51 384-435 7-57 (125)
153 TIGR02778 ligD_pol DNA polymer 33.2 1.7E+02 0.0037 30.5 7.7 63 312-411 134-196 (245)
154 COG3171 Uncharacterized protei 32.1 40 0.00087 31.3 2.7 32 230-261 25-60 (119)
155 COG0381 WecB UDP-N-acetylgluco 32.1 1.4E+02 0.003 33.1 7.2 36 403-438 90-126 (383)
156 cd04863 MtLigD_Pol_like MtLigD 31.5 1.9E+02 0.0041 29.9 7.6 42 354-410 142-183 (231)
157 TIGR00087 surE 5'/3'-nucleotid 31.1 6.1E+02 0.013 26.2 13.0 116 277-436 1-128 (244)
158 PRK00455 pyrE orotate phosphor 30.6 2.8E+02 0.006 27.2 8.6 49 387-436 47-95 (202)
159 PF08672 APC2: Anaphase promot 29.8 29 0.00063 28.4 1.3 36 5-40 13-51 (60)
160 TIGR03254 oxalate_oxc oxalyl-C 29.4 2.2E+02 0.0047 32.2 8.5 74 392-480 197-273 (554)
161 cd04862 PaeLigD_Pol_like PaeLi 29.4 2.2E+02 0.0048 29.4 7.7 43 354-411 138-180 (227)
162 PRK02304 adenine phosphoribosy 28.7 2.2E+02 0.0047 27.3 7.3 31 404-434 50-80 (175)
163 TIGR01367 pyrE_Therm orotate p 27.8 3.3E+02 0.0071 26.7 8.5 48 386-434 40-87 (187)
164 PRK09177 xanthine-guanine phos 27.8 1.4E+02 0.003 28.5 5.7 51 384-436 12-62 (156)
165 PLN03004 UDP-glycosyltransfera 27.7 5.4E+02 0.012 28.8 11.1 119 301-438 15-142 (451)
166 cd04861 LigD_Pol_like LigD_Pol 27.6 2.5E+02 0.0054 29.0 7.7 62 314-412 120-181 (227)
167 cd04866 LigD_Pol_like_3 LigD_P 27.5 2.4E+02 0.0053 29.0 7.6 43 354-411 133-176 (223)
168 PRK08558 adenine phosphoribosy 27.5 1.6E+02 0.0034 30.1 6.4 32 404-435 110-141 (238)
169 PRK07524 hypothetical protein; 27.1 2.1E+02 0.0045 32.2 7.8 79 392-480 192-271 (535)
170 cd04865 LigD_Pol_like_2 LigD_P 26.9 2.6E+02 0.0056 28.9 7.7 44 354-412 139-182 (228)
171 TIGR01284 alt_nitrog_alph nitr 26.9 3E+02 0.0064 30.7 8.9 27 404-435 394-420 (457)
172 cd04864 LigD_Pol_like_1 LigD_P 26.7 2.6E+02 0.0056 28.9 7.7 64 311-411 118-181 (228)
173 PRK13934 stationary phase surv 26.0 8E+02 0.017 25.9 12.9 37 277-340 1-37 (266)
174 PRK07979 acetolactate synthase 25.6 3.5E+02 0.0076 30.7 9.4 47 391-439 196-245 (574)
175 PLN02207 UDP-glycosyltransfera 25.6 7.9E+02 0.017 27.7 11.9 119 300-438 14-145 (468)
176 cd01452 VWA_26S_proteasome_sub 25.5 3.4E+02 0.0074 26.9 8.1 47 320-370 131-177 (187)
177 PF03959 FSH1: Serine hydrolas 25.5 2E+02 0.0044 28.1 6.6 36 387-425 86-121 (212)
178 cd03466 Nitrogenase_NifN_2 Nit 25.2 2.5E+02 0.0054 30.9 7.9 26 404-434 371-396 (429)
179 PRK12342 hypothetical protein; 25.0 1.1E+02 0.0024 31.7 4.8 35 405-439 109-147 (254)
180 PRK03359 putative electron tra 24.6 1.2E+02 0.0026 31.6 4.9 34 405-438 112-149 (256)
181 PRK14478 nitrogenase molybdenu 24.5 3.4E+02 0.0074 30.4 8.9 27 404-435 392-418 (475)
182 PRK07418 acetolactate synthase 24.2 4.5E+02 0.0097 30.3 9.9 81 392-480 215-298 (616)
183 PF10673 DUF2487: Protein of u 23.9 6.5E+02 0.014 24.1 10.4 94 239-370 22-115 (142)
184 PF11513 TA0956: Thermoplasma 23.7 67 0.0015 29.0 2.5 30 245-274 24-53 (110)
185 TIGR02720 pyruv_oxi_spxB pyruv 23.7 3.2E+02 0.007 31.1 8.6 83 391-481 190-273 (575)
186 TIGR02990 ectoine_eutA ectoine 23.7 4.2E+02 0.009 27.2 8.6 34 404-437 180-215 (239)
187 COG0028 IlvB Thiamine pyrophos 23.5 3E+02 0.0066 31.6 8.3 82 392-481 191-275 (550)
188 PF00975 Thioesterase: Thioest 23.4 1.4E+02 0.0029 28.6 4.8 49 388-437 49-102 (229)
189 PF03358 FMN_red: NADPH-depend 22.3 1.6E+02 0.0035 26.7 4.9 38 277-336 1-38 (152)
190 CHL00099 ilvB acetohydroxyacid 22.1 4.3E+02 0.0093 30.2 9.2 78 392-480 208-291 (585)
191 PRK06457 pyruvate dehydrogenas 21.8 3E+02 0.0066 31.0 7.9 80 393-480 187-267 (549)
192 TIGR01501 MthylAspMutase methy 20.9 1.6E+02 0.0035 27.7 4.6 28 225-252 100-129 (134)
193 PRK05858 hypothetical protein; 20.8 4.4E+02 0.0095 29.7 8.9 74 392-480 194-270 (542)
194 PLN00016 RNA-binding protein; 20.4 1.3E+02 0.0029 31.9 4.4 16 320-339 75-90 (378)
195 TIGR03590 PseG pseudaminic aci 20.4 6E+02 0.013 26.1 9.1 29 300-340 14-42 (279)
196 PF12357 PLD_C: Phospholipase 20.1 1.7E+02 0.0037 25.3 4.1 56 241-303 11-69 (74)
197 PRK12474 hypothetical protein; 20.0 5.4E+02 0.012 28.8 9.3 42 391-434 191-235 (518)
No 1
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=100.00 E-value=1.7e-195 Score=1542.36 Aligned_cols=548 Identities=72% Similarity=1.186 Sum_probs=472.5
Q ss_pred ccccchHHHHHHHHHHhHHHHHHHHHHHHhcCCCccchhHHHHHHHhhhHhhhc--cccCCcHHHHHhhcceeeEcCCeE
Q 008531 7 TRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESISEENRK--HLTEGAFGEVLRATQEAIVLPPWV 84 (562)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~qe~~~~~~~~ 84 (562)
||++||+|+|+++|++||++|++||+||+++||+|||||||+++|+++++++++ +..+|+||++|++||||||.||||
T Consensus 1 tr~~s~~e~~~~~L~~~R~~l~~llsr~~~~gk~~l~r~~ll~ef~~~~~~~~~~~~~~~g~lg~ll~~tQEaIv~pp~v 80 (550)
T PF00862_consen 1 TRSHSIRERVPDTLSQHRNELKRLLSRYVAQGKRYLLRHDLLDEFEAYCEDDKEKLFLLSGPLGELLRSTQEAIVLPPWV 80 (550)
T ss_dssp -------GGGTTTGGGTTSHHHHHHHHHHHHHTSSEEEECHHHHHTHHHHSTTTGCCT--STHHHHHHTEEEEEECSSEE
T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHhcccchhhcccchHHHHHHhcceeEecCCeE
Confidence 699999999999999999999999999999999999999999999999876655 557899999999999999999999
Q ss_pred EEEEcCCCceEEEEEEecCcceeeecCHHHHhhhcccccCCCCCCCCeeeeecccccCCCCCCCCCCCCCchhhhhhHhh
Q 008531 85 ALAVRPRPGVWEYIRVNVHALVVEELLVAEYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHL 164 (562)
Q Consensus 85 ~~~~r~~~~~~~~~r~~~~~l~~~~~~~~~~l~~ke~~v~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~flnr~l 164 (562)
|||||||||+|||||||+++|+||+|||+|||+|||+|||++++++++|||||+|||++||+|++||||||||+||||||
T Consensus 81 ~lavRPrpg~WeyvRv~~~~L~vE~ltvseyL~fKE~LV~~~~~~~~vLElDf~PFn~~~Prlt~s~sIGnGv~FLNR~L 160 (550)
T PF00862_consen 81 ALAVRPRPGVWEYVRVNVDDLSVEELTVSEYLKFKERLVDGSANDEFVLELDFEPFNASFPRLTDSSSIGNGVQFLNRHL 160 (550)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEE-HHHHHHHHHHHHHSS-SSTTS-EEE-GGGHTTS----SGGGTTBHHHHHHHHH
T ss_pred EEEEcCCCccEEEEEEEhhhCcceecCHHHHHHHHHHHcCCccCCCCeeeeecccccccCCCCCCcccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCchhHHHHHhhcccCCeeeeccccCCCHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHhhcCCccccCCcH
Q 008531 165 SAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWGDTA 244 (562)
Q Consensus 165 ss~~~~~~~~~~~l~~fl~~~~~~g~~lm~n~~i~~~~~l~~~l~~a~~~l~~~~~~~p~~~~~~~~~~~g~e~gwg~~a 244 (562)
|||||+|++++++||||||+|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+|||||||||||
T Consensus 161 Ssklf~d~e~~~~Ll~fL~~h~~~G~~Lmlndri~s~~~L~~aL~~A~~~L~~~p~~tpy~~f~~~~q~~Gfe~GWG~ta 240 (550)
T PF00862_consen 161 SSKLFQDKESLEPLLDFLRVHNYNGQQLMLNDRIQSVSKLQSALRKAEEFLSKLPPDTPYSEFEHKLQELGFEPGWGDTA 240 (550)
T ss_dssp HHHHTT-HHHHHHHHHHHHH-EETTEEBSB-TT--SHHHHHHHHHHHHHHHHHS-TT-BHHHHHHHHHHHTB-B-S-SBH
T ss_pred HHHhcCChHHHHHHHHHHHHhccCCeEeeecCCCCCHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCCCCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCcCchhHHhcCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhC
Q 008531 245 ERALEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQ 324 (562)
Q Consensus 245 ~rv~e~~~~l~~~l~ap~p~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~ 324 (562)
+||+|||+||+||||||||++||+||+||||+|+|+++||||||+|.+++|+||||||||||+||||||+++|..+|+++
T Consensus 241 ~rv~et~~lL~dll~aPdp~~LE~Fl~RiPmvf~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~ 320 (550)
T PF00862_consen 241 ERVLETMHLLSDLLEAPDPSTLEKFLSRIPMVFNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQ 320 (550)
T ss_dssp HHHHHHHHHHHHHHHS--HHHHHHHHHHS---SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHhhhcceeEEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCC
Q 008531 325 GLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQG 404 (562)
Q Consensus 325 Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~ 404 (562)
|+++.|+|+|+||++|++.||+|++++|++.+++|++|+||||++.+|++++|+|||++||||++|++++.+++.+++++
T Consensus 321 gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe~fa~d~~~~i~~e~~~ 400 (550)
T PF00862_consen 321 GLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWISRFDLWPYLEEFADDAEREILAELQG 400 (550)
T ss_dssp T-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---GGG-GGGHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccchhhchhhHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHH
Q 008531 405 KPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEI 484 (562)
Q Consensus 405 ~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi 484 (562)
+||+|||||+|||+||++||+++|||+|+|+||||++||..++.+|++++.+|||||||+||.++||+||+|||||+|||
T Consensus 401 ~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~QEI 480 (550)
T PF00862_consen 401 KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQEI 480 (550)
T ss_dssp --SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHHHH
T ss_pred CCcEEEeccCcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCChhhhccCCChHHHHHhccC
Q 008531 485 AGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYS 554 (562)
Q Consensus 485 ~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~~e~R~~~~~~~ie~ll~~ 554 (562)
+|+++++|||+||+|||||||||||+||++|+|||||||||+|.++|||++++++|++++|++||+||||
T Consensus 481 ~g~~~~~gqyes~~~ftlpgLyrvv~Gi~vFdPkfNiv~PGad~~iyFpyt~~~~Rl~~~~~~ie~Llfs 550 (550)
T PF00862_consen 481 AGQKDTVGQYESHKAFTLPGLYRVVNGIDVFDPKFNIVSPGADESIYFPYTEKERRLTSLHPEIEELLFS 550 (550)
T ss_dssp HB-SSSBHTTGGGSSEEETTTEEEEES--TT-TTEEE------TTTS--TT-TTTS-GGGHHHHHHHHH-
T ss_pred cCCccccCCccchhhcchHhHHhhhccccccCCcccccCCCCCcceecCCccccccchhhhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN00142 sucrose synthase
Probab=100.00 E-value=3.2e-171 Score=1434.56 Aligned_cols=561 Identities=79% Similarity=1.256 Sum_probs=547.2
Q ss_pred CcccccccccchHHHHHHHHHHhHHHHHHHHHHHHhcCCCccchhHHHHHHHhhh--HhhhccccCCcHHHHHhhcceee
Q 008531 1 MAERALTRVHSLRERLDETLSAHRNEILALLSRIEGKGKGILQNHQLIAEFESIS--EENRKHLTEGAFGEVLRATQEAI 78 (562)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~qe~~ 78 (562)
|++++|+|++||+|+++++|++|||+|++||+||+++||++|++|||+++|+++. +.++.++.+|+||++|++|||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (815)
T PLN00142 2 AAAPVLTRSHSIRERVPDALSQHRNELKALLSRYVAQGKGILQPHQLIDELEAVIDDDEERKKLLDGPFGDILRSTQEAI 81 (815)
T ss_pred CCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhhhhhhhhhhccCcHHHHHHhhhhhh
Confidence 5668999999999999999999999999999999999999999999999999994 44577899999999999999999
Q ss_pred EcCCeEEEEEcCCCceEEEEEEecCcceeeecCHHHHhhhcccccCCCCCCCCeeeeecccccCCCCCCCCCCCCCchhh
Q 008531 79 VLPPWVALAVRPRPGVWEYIRVNVHALVVEELLVAEYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVE 158 (562)
Q Consensus 79 ~~~~~~~~~~r~~~~~~~~~r~~~~~l~~~~~~~~~~l~~ke~~v~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~ 158 (562)
|.|||||||||||||+|||||||++||+||+|||+|||+|||+|||++.+++++|||||+|||++|||+|+||||||||+
T Consensus 82 ~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~yl~~ke~~~~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~ 161 (815)
T PLN00142 82 VLPPFVALAVRPRPGVWEYVRVNVSELSVEELTVSEYLKFKEELVDGSWNDNFVLELDFEPFNASFPRPTLSSSIGNGVQ 161 (815)
T ss_pred ccCCeeEEEEcCCCcceEEEEEEhhhCceeeecHHHhhhhhHhhcCcccCCCceEEEecccccccCCCCCCcccccccHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred hhhHhhhhhhcCCCCCchhHHHHHhhcccCCeeeeccccCCCHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHhhcCCcc
Q 008531 159 FLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLER 238 (562)
Q Consensus 159 flnr~lss~~~~~~~~~~~l~~fl~~~~~~g~~lm~n~~i~~~~~l~~~l~~a~~~l~~~~~~~p~~~~~~~~~~~g~e~ 238 (562)
|||||||||||+|++++++||||||+|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+|||||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 241 (815)
T PLN00142 162 FLNRHLSSKLFRDKESLEPLLDFLRAHNHKGETLMLNDRIQTLSKLQSALRKAEEYLSKLPKDTPYSEFEHRFQELGLEK 241 (815)
T ss_pred HHHHHHHHhhccCchhhhhHHHHHHHhhcCCceeeecCCCCCHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHhhcCCCcCchhHHhcCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 008531 239 GWGDTAERALEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEML 318 (562)
Q Consensus 239 gwg~~a~rv~e~~~~l~~~l~ap~p~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~ 318 (562)
||||||+||+|||+||+||||||||++||+||+||||+|||+|||+||||+|.+++|+||||||+|||+|||||||++|.
T Consensus 242 gwg~~~~~~~~~~~~l~~~~~~p~~~~~e~f~~~~p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~ 321 (815)
T PLN00142 242 GWGDTAERVLETIHLLLDLLQAPDPSTLEKFLGRIPMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEML 321 (815)
T ss_pred CcCccHHHHHHHHHHHHHHHhCCChhHHHHHHhhhhHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHH
Q 008531 319 LRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEI 398 (562)
Q Consensus 319 ~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i 398 (562)
++|+++||+++|+|+|+||+++++.+++|++++|.+.+++|++|+||||++.++++++|+||+++||||+.|+.++.+++
T Consensus 322 ~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~~~~~~ 401 (815)
T PLN00142 322 LRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAEDAASEI 401 (815)
T ss_pred HHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEe
Q 008531 399 AKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIIT 478 (562)
Q Consensus 399 ~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIa 478 (562)
.++.+++|||||||||+||+||.++|+++|||+|+|+|||++.||.++|.+|++.+.+|++++||++|+++|++||+|||
T Consensus 402 ~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIa 481 (815)
T PLN00142 402 LAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIIT 481 (815)
T ss_pred HHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHh
Confidence 77667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCChhhhccCCChHHHHHhccCCCCC
Q 008531 479 STFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVEN 558 (562)
Q Consensus 479 SS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~~e~R~~~~~~~ie~ll~~~~~~ 558 (562)
||++|++|+++.++||++|++||||+|||+|+||+++++||+|||||+|.++|+|++.+++|.+.+|+.|++++|+++++
T Consensus 482 sT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~ 561 (815)
T PLN00142 482 STYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQN 561 (815)
T ss_pred CcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999998876
Q ss_pred CCC
Q 008531 559 KEH 561 (562)
Q Consensus 559 ~~~ 561 (562)
.+|
T Consensus 562 ~e~ 564 (815)
T PLN00142 562 DEH 564 (815)
T ss_pred HHH
Confidence 543
No 3
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=2.6e-164 Score=1377.02 Aligned_cols=538 Identities=73% Similarity=1.194 Sum_probs=523.7
Q ss_pred HHHHHHHHHHHHhcCCCccchhHHHHHHHhhh--HhhhccccCCcHHHHHhhcceeeEcCCeEEEEEcCCCceEEEEEEe
Q 008531 24 RNEILALLSRIEGKGKGILQNHQLIAEFESIS--EENRKHLTEGAFGEVLRATQEAIVLPPWVALAVRPRPGVWEYIRVN 101 (562)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~qe~~~~~~~~~~~~r~~~~~~~~~r~~ 101 (562)
|++|++||+||+++||++||+|||+++|++++ +.++.++.+|+||++|++||||||.|||||||||||||+|||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~~~~~~~~~~r~~~~~~~~~~~~ 80 (784)
T TIGR02470 1 RAELRQLLSRYVSQGKRYLLRHQLLDEFEQYCSDADKEKKLSESALGKLIFSTQEAIVLPPWVALAVRPRIGVWEYVRVN 80 (784)
T ss_pred ChHHHHHHHHHHhcCCCcccHHHHHHHHHHHhhhhhhhhhhccCcHHHHHHhhhhheecCCeeEEEEcCCCcceEEEEEE
Confidence 78999999999999999999999999999995 3346689999999999999999999999999999999999999999
Q ss_pred cCcceeeecCHHHHhhhcccccCCCCCCCCeeeeecccccCCCCCCCCCCCCCchhhhhhHhhhhhhcCCCCCchhHHHH
Q 008531 102 VHALVVEELLVAEYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEF 181 (562)
Q Consensus 102 ~~~l~~~~~~~~~~l~~ke~~v~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~flnr~lss~~~~~~~~~~~l~~f 181 (562)
++||+||+||++|||+|||+|||++.+++++|||||+|||++||+||+||||||||+|||||||||||+|++++++||||
T Consensus 81 ~~~l~~~~~~~~~yl~~ke~~~~~~~~~~~~le~d~~pf~~~~p~~~~~~~ig~g~~~~~r~~s~~~~~~~~~~~~~~~~ 160 (784)
T TIGR02470 81 VEELSVEELTISEYLDFKEQLVNGHPNDGFVLELDFEPFNASFPRPSDSKSIGNGVQFLNRHLSSKLFQDPESMEPLLNF 160 (784)
T ss_pred hhhCceeeecHHHHhhhhHhhcCcccCCCceEEEecccccccCCCCCCcccccccHHHHHHHHHHHhcCCchhhhhHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeeeeccccCCCHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHhhcCCccccCCcHHHHHHHHHHHHHhhcCC
Q 008531 182 LRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWGDTAERALEMIQLLLDLLEAP 261 (562)
Q Consensus 182 l~~~~~~g~~lm~n~~i~~~~~l~~~l~~a~~~l~~~~~~~p~~~~~~~~~~~g~e~gwg~~a~rv~e~~~~l~~~l~ap 261 (562)
||.|+|+|++|||||||+|+++||+||++|++||+++|+||||++|+++||+|||||||||||+||+|||+||+||||||
T Consensus 161 l~~~~~~g~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~g~~~gwg~~~~~~~~~~~~l~~~~~~p 240 (784)
T TIGR02470 161 LRVHNYNGIQLMINDRIQSVSHLQSQLRKAEEFLSALPPDTPYSEFEFELQELGFEPGWGDTAQRVLETLHLLDDLLEAP 240 (784)
T ss_pred HHHhccCCceeeecCCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHhCCCCCcCccHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchhHHhcCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCC
Q 008531 262 DPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPD 341 (562)
Q Consensus 262 ~p~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~ 341 (562)
||++||+||+||||+|||+|||+||||+|++++|+||||||+|||+|||||||++|.++|+++||+++|+|+|+||++++
T Consensus 241 ~~~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~ 320 (784)
T TIGR02470 241 DPSVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPD 320 (784)
T ss_pred ChhHHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccceeecCCCCcEEEEecCCCCCc-ccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHH
Q 008531 342 AVGTTCGQRLEKVYGTKYSDILRVPFRTEKG-VVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVA 420 (562)
Q Consensus 342 ~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~-~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA 420 (562)
+.+++|++++|.+.+++|++|+|||+++.++ ++++|+||+++|||++.|+.++.+++.++.+++||+||||||+||+||
T Consensus 321 ~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva 400 (784)
T TIGR02470 321 AEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVA 400 (784)
T ss_pred ccccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHH
Confidence 8899999999999999999999999999877 799999999999999999999999997766789999999999999999
Q ss_pred HHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhccccccccccccccc
Q 008531 421 SLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAF 500 (562)
Q Consensus 421 ~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~f 500 (562)
.++|+++|||+|+|+||+++.|+..++.+|++.+.+|++++||++|+++|++||+|||||+||++++++.++||++|++|
T Consensus 401 ~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~f 480 (784)
T TIGR02470 401 SLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAF 480 (784)
T ss_pred HHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeecccccCCCceEEecCCCccCCccCCChhhhccCCChHHHHHhccCCCCCCCC
Q 008531 501 TLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEH 561 (562)
Q Consensus 501 t~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~~e~R~~~~~~~ie~ll~~~~~~~~~ 561 (562)
|||+||++++||+++++|++|||||||+++|+|++.+.+|.+.+++.|+++||+++++.+|
T Consensus 481 t~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~ 541 (784)
T TIGR02470 481 TMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEH 541 (784)
T ss_pred cccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987554
No 4
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=4.9e-42 Score=394.86 Aligned_cols=239 Identities=27% Similarity=0.487 Sum_probs=199.9
Q ss_pred cceEEEEcCCCCCCCCCC-CCC-CCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEecCCCCC-CCCccccc
Q 008531 276 VFNVVILTPHGYFAQDDV-LGY-PDTGGQVVYILDQVRALEDEMLLRIKQQG--LDITPQILIITRLLPDA-VGTTCGQR 350 (562)
Q Consensus 276 ~~rIliiS~Hg~f~~~~v-lG~-pDtGGqvvYVldlarALe~~l~~~l~~~G--h~~~~~V~V~TR~~~~~-~gt~~~q~ 350 (562)
.|+|++||+||+|.+.++ +|+ +|||||++||++|||||++ +| | +|+|+||.+.++ .+++|.++
T Consensus 169 ~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~--------~~gv~----~Vdl~TR~~~~~~~~~~y~~p 236 (1050)
T TIGR02468 169 KLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGS--------MPGVY----RVDLLTRQVSSPDVDWSYGEP 236 (1050)
T ss_pred ceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHh--------CCCCC----EEEEEeCCcCccccccccCCc
Confidence 478999999999977776 885 9999999999999999998 67 6 999999998754 35667777
Q ss_pred ceeec------------CCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHH-----------cCCCCC
Q 008531 351 LEKVY------------GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKE-----------LQGKPD 407 (562)
Q Consensus 351 ~E~i~------------~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~-----------~~~~PD 407 (562)
.|.+. .++|++|+|||++|.. +|++|+.+|||++.|++.+.+++.+. .+..||
T Consensus 237 ~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~----~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pD 312 (1050)
T TIGR02468 237 TEMLTPRSSENDGDEMGESSGAYIIRIPFGPRD----KYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPY 312 (1050)
T ss_pred cccccccccccccccccCCCCeEEEEeccCCCC----CCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCC
Confidence 65442 4569999999999973 58899999999999999999987531 112499
Q ss_pred EEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCC---CCc-chhcccCcccccchhHHHHHHHHhhCCEEEecCHHH
Q 008531 408 LIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYP---DSD-IYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 483 (562)
Q Consensus 408 LIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~---~s~-~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qE 483 (562)
|||+|||++|+||.++++.+|||+|+|+|||++.|+. ..+ ..|++++..|++++|+.+|+.++++||+|||||.+|
T Consensus 313 vIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIasT~qE 392 (1050)
T TIGR02468 313 VIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITSTRQE 392 (1050)
T ss_pred EEEECcchHHHHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEeCHHH
Confidence 9999999999999999999999999999999988864 233 256667777899999999999999999999999999
Q ss_pred HhcccccccccccccccccCCceee-----ecccc---cCCCceEEecCCCccCCccCCChh
Q 008531 484 IAGSKDTVGQYESHTAFTLPGLYRV-----VHGID---VFDPKFNIVSPGADMSIYFPYTEE 537 (562)
Q Consensus 484 i~~~~~~l~qyes~~~ft~p~Lyr~-----v~gi~---v~dpKi~VIPpGVD~e~F~P~~~~ 537 (562)
++ .||+.|.+|. |.|||+ +.|+. ++.+|++|||||||+++|.|.+..
T Consensus 393 ~~------eq~~lY~~~~-~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~ 447 (1050)
T TIGR02468 393 IE------EQWGLYDGFD-VILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGD 447 (1050)
T ss_pred HH------HHHHHhccCC-chhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCcc
Confidence 97 4787777777 777766 23333 356799999999999999997543
No 5
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3e-39 Score=347.89 Aligned_cols=310 Identities=40% Similarity=0.552 Sum_probs=285.1
Q ss_pred eccccCCCHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHhhcCCccccCCcHHHHHHHHHHHHHhhcCCCcCchhHHhcC
Q 008531 193 MLNDRIQNLNSLQHVLRKAEEYLTTVVPETPFSELALRFQEIGLERGWGDTAERALEMIQLLLDLLEAPDPCTLETFLGR 272 (562)
Q Consensus 193 m~n~~i~~~~~l~~~l~~a~~~l~~~~~~~p~~~~~~~~~~~g~e~gwg~~a~rv~e~~~~l~~~l~ap~p~~le~f~~r 272 (562)
|.||++++.+.+|+++.+|+..++.. .+||+..|.+.++..++++|||.++.+|.+++++++
T Consensus 1 ~~~~~~~~~~~~qk~~~~~m~~~~~~-~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s----------------- 62 (495)
T KOG0853|consen 1 MTNDSSSNISELQKVLWKAMIEKSLL-VSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS----------------- 62 (495)
T ss_pred CcchhhhHHHHhhhhhhhhhhhhhcc-cccccccchhheeeccccccCchHHHhHHHHHHHHh-----------------
Confidence 78999999999999999999999999 999999999999999999999999999999999998
Q ss_pred CCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccce
Q 008531 273 IPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLE 352 (562)
Q Consensus 273 ~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E 352 (562)
++. +||.||+||||+|+.+++++|+..+..+..+++.++.++|.|++++.|.+.| +..+
T Consensus 63 ----------------~~~-~lg~~d~G~qV~~l~~h~~al~~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~----~~~~ 121 (495)
T KOG0853|consen 63 ----------------GQD-VLGLPDTGGQVVYLTSHEDALEMPLLLRCFAETLDGTPPILVVGDWLPRAMG----QFLE 121 (495)
T ss_pred ----------------ccc-ccCCCCCCceEEEEehhhhhhcchHHHHHHHHHhcCCCceEEEEeecCcccc----hhhh
Confidence 346 9999999999999999999999888889999999988999999999998765 3445
Q ss_pred eecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEE
Q 008531 353 KVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQC 432 (562)
Q Consensus 353 ~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V 432 (562)
....+.+++|+|+|++. +.+|+ +++|||+..|+ .+...+.+.+++ ||+||+|||+++.++.+++.++|++.|
T Consensus 122 ~~~~~~~~~il~~~~~~----~~k~~--~~~d~~i~d~~-~~~~~l~~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~ 193 (495)
T KOG0853|consen 122 QVAGCAYLRILRIPFGI----LFKWA--EKVDPIIEDFV-SACVPLLKQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKV 193 (495)
T ss_pred hhhccceeEEEEeccch----hhhhh--hhhceeecchH-HHHHHHHHHhcC-CcccceeEEeccchHHHhccccCccce
Confidence 56677899999999964 45777 88999999999 566777777676 999999999999999999999999999
Q ss_pred EEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCC-ceeeecc
Q 008531 433 TIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPG-LYRVVHG 511 (562)
Q Consensus 433 ~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~-Lyr~v~g 511 (562)
.+.|+++..++...+.+|+.+.+.|++++||+++...|+++| |+++++|++++..+.+||+++..|++|. ++|+|+|
T Consensus 194 l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d--~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~ 271 (495)
T KOG0853|consen 194 LYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSD--ITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSG 271 (495)
T ss_pred eehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCC--cceeeccccchhccccccccchhcccccceeeeecc
Confidence 999999999999899999999999999999999999999999 9999999999999999999999999999 9999999
Q ss_pred cccCCCceEEecCCCccCCccCCChhhhccCCChHHHHHhccCCCCCCCC
Q 008531 512 IDVFDPKFNIVSPGADMSIYFPYTEEKRRLKSFHPEIEELLYSDVENKEH 561 (562)
Q Consensus 512 i~v~dpKi~VIPpGVD~e~F~P~~~~e~R~~~~~~~ie~ll~~~~~~~~~ 561 (562)
++++.+++|+|+||-|.+.+.| +.+.+|+.|.+ ++.++||
T Consensus 272 ~d~~~~siN~~~pgkd~~l~l~------a~~~~~~~i~~----~~~~~~h 311 (495)
T KOG0853|consen 272 IDRFFPSINRFEPGKDQDLALP------AFTLLHDSIPE----PSISSEH 311 (495)
T ss_pred cceEeeeeeecCCCCCceeehh------hHHhhhcccCC----CCCCceE
Confidence 9999999999999999999998 56777777776 5556666
No 6
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.95 E-value=4.5e-27 Score=249.85 Aligned_cols=221 Identities=29% Similarity=0.537 Sum_probs=163.2
Q ss_pred ceEEEEcCCCCCCCCC-CCCC-CCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCC-CCccccccee
Q 008531 277 FNVVILTPHGYFAQDD-VLGY-PDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAV-GTTCGQRLEK 353 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~-vlG~-pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~-gt~~~q~~E~ 353 (562)
.||+++|+||+|+|.+ .+|+ |++||+.+|+.+++++|++ +|| ..+|+|+|+..++.. ++.+..+.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~--------~G~--~~~V~v~t~~~~~~~~~~~~~~~~~~ 70 (439)
T TIGR02472 1 LYLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALAR--------RSE--VEQVDLVTRLIKDAKVSPDYAQPIER 70 (439)
T ss_pred CeEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHh--------CCC--CcEEEEEeccccCcCCCCccCCCeeE
Confidence 4899999999999988 6775 9999999999999999988 786 228999998765421 1233333333
Q ss_pred ecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEE
Q 008531 354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 433 (562)
Q Consensus 354 i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~ 433 (562)
+. +|++|+|+|+++. .|.++.++|+|+..|+..+.+.+.+ ...+|||||+|+|.++.+|.++++.+++|+|+
T Consensus 71 ~~--~gv~v~r~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~ 142 (439)
T TIGR02472 71 IA--PGARIVRLPFGPR-----RYLRKELLWPYLDELADNLLQHLRQ-QGHLPDLIHAHYADAGYVGARLSRLLGVPLIF 142 (439)
T ss_pred eC--CCcEEEEecCCCC-----CCcChhhhhhhHHHHHHHHHHHHHH-cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEE
Confidence 32 4899999999875 4666778899999999888887743 23479999999999999999999999999999
Q ss_pred EecCCCcCcCC---CCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeec
Q 008531 434 IAHALEKTKYP---DSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVH 510 (562)
Q Consensus 434 T~HSLe~~Ky~---~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~ 510 (562)
|.|+....+.. ..+..+......|.+..++..|+++++.||.||++|.+++. .+|..+ .
T Consensus 143 t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~------~~~~~~------------~ 204 (439)
T TIGR02472 143 TGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIE------EQYALY------------D 204 (439)
T ss_pred ecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHH------HHHHhc------------c
Confidence 99987543211 11111111222244556666789999999999999987654 122211 0
Q ss_pred ccccCCCceEEecCCCccCCccCCC
Q 008531 511 GIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 511 gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
| ++..|+.|||||||++.|.|..
T Consensus 205 ~--~~~~ki~vIpnGvd~~~f~~~~ 227 (439)
T TIGR02472 205 S--YQPERMQVIPPGVDLSRFYPPQ 227 (439)
T ss_pred C--CCccceEEECCCcChhhcCCCC
Confidence 2 2345999999999999998854
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.82 E-value=1.5e-19 Score=194.30 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=138.2
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCc-ccccceee-
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT-CGQRLEKV- 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~-~~q~~E~i- 354 (562)
|||+|+|++.++ ...+||+..+|.+|+++|++ +|| +|.|+|+..+...... -......+
T Consensus 1 m~i~~vs~e~~P-------~~k~GGl~~~v~~L~~~L~~--------~G~----~V~v~~p~y~~~~~~~~~~~~~~~~~ 61 (466)
T PRK00654 1 MKILFVASECAP-------LIKTGGLGDVVGALPKALAA--------LGH----DVRVLLPGYPAIREKLRDAQVVGRLD 61 (466)
T ss_pred CeEEEEEccccc-------CcccCcHHHHHHHHHHHHHH--------CCC----cEEEEecCCcchhhhhcCceEEEEee
Confidence 799999999653 12589999999999999987 899 9999999865421000 00000001
Q ss_pred --------cCCCCcEEEEecCCCCCcccccccCccCchHHHHH------HHHHHHHHHHHHcCCCCCEEEecCcChHHHH
Q 008531 355 --------YGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLET------YTEDVAVEIAKELQGKPDLIIGNYSDGNIVA 420 (562)
Q Consensus 355 --------~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~------fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA 420 (562)
...+|++|++|+... +..+..++.|.+. |+..+...+. ..+.+|||||+|+|.+|++|
T Consensus 62 ~~~~~~~~~~~~gv~v~~v~~~~-------~~~~~~~y~~~d~~~r~~~f~~~~~~~~~-~~~~~pDiiH~h~w~~~~~~ 133 (466)
T PRK00654 62 LFTVLFGHLEGDGVPVYLIDAPH-------LFDRPSGYGYPDNGERFAFFSWAAAEFAE-GLDPRPDIVHAHDWHTGLIP 133 (466)
T ss_pred eEEEEEEeEEcCCceEEEEeCHH-------HcCCCCCCCCcChHHHHHHHHHHHHHHHH-hcCCCCceEEECCcHHHHHH
Confidence 012589999997632 3334455554422 5565666553 34569999999999999999
Q ss_pred HHHHHhc-----CCcEEEEecCCCcCcCCC------Ccchhccc-CcccccchhHHHHHHHHhhCCEEEecCHHHHhccc
Q 008531 421 SLLAHKL-----GVTQCTIAHALEKTKYPD------SDIYWKNL-DDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSK 488 (562)
Q Consensus 421 ~lLArkl-----gVP~V~T~HSLe~~Ky~~------s~~~w~~~-e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~ 488 (562)
..+++++ ++|+|+|.|+++...... .+..|+.. .....+..++...+.+++.||.|||+|......
T Consensus 134 ~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~e-- 211 (466)
T PRK00654 134 ALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYARE-- 211 (466)
T ss_pred HHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHH--
Confidence 9999875 899999999986432110 01111100 001111123344667899999999999755431
Q ss_pred ccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 489 DTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 489 ~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
....+.+ +.+.+++ +....|+.+||||||.+.|.|..
T Consensus 212 -i~~~~~~---~gl~~~~------~~~~~ki~vI~NGid~~~~~p~~ 248 (466)
T PRK00654 212 -ITTPEFG---YGLEGLL------RARSGKLSGILNGIDYDIWNPET 248 (466)
T ss_pred -hccccCC---cChHHHH------HhcccCceEecCCCCccccCCcc
Confidence 2221111 1111122 12245999999999999999853
No 8
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.77 E-value=1.1e-17 Score=169.81 Aligned_cols=206 Identities=30% Similarity=0.488 Sum_probs=147.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+|++.|+.+ ...-|.|+.||..+++.+++++|.+ +|| +|.|+|...+.... ..+ ...
T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~GG~~~~~~~l~~~L~~--------~g~----~V~v~~~~~~~~~~-----~~~--~~~ 59 (398)
T cd03800 1 RIALISLHGSP--LAQPGGADTGGQNVYVLELARALAR--------LGH----EVDIFTRRIDDALP-----PIV--ELA 59 (398)
T ss_pred CeEEEeccccc--cccCCCCCCCceeehHHHHHHHHhc--------cCc----eEEEEEecCCcccC-----Ccc--ccc
Confidence 68999999865 3445679999999999999999877 899 99999975443211 001 112
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
+++.+++++..+. ...++..+++++..|...+.+.+... ..+||+||+|++.++.++..+++.+++|+|+|+|+
T Consensus 60 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 133 (398)
T cd03800 60 PGVRVVRVPAGPA-----EYLPKEELWPYLDEFADDLLRFLRRE-GGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHS 133 (398)
T ss_pred cceEEEecccccc-----cCCChhhcchhHHHHHHHHHHHHHhc-CCCccEEEEecCccchHHHHHHhhcCCceEEEeec
Confidence 4899999988764 33444557788888888888877542 23899999999999999999999999999999999
Q ss_pred CCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCC
Q 008531 438 LEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDP 517 (562)
Q Consensus 438 Le~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dp 517 (562)
++..+.......|. +....++..|..+++.||.||++|...... ....| .....
T Consensus 134 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~---~~~~~------------------~~~~~ 187 (398)
T cd03800 134 LGAVKRRHLGAADT-----YEPARRIEAEERLLRAADRVIASTPQEAEE---LYSLY------------------GAYPR 187 (398)
T ss_pred ccccCCcccccccc-----cchhhhhhHHHHHHhhCCEEEEcCHHHHHH---HHHHc------------------ccccc
Confidence 87544322111111 123344567888999999999999876541 11111 11234
Q ss_pred ceEEecCCCccCCccCCCh
Q 008531 518 KFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 518 Ki~VIPpGVD~e~F~P~~~ 536 (562)
|+.+||||+|.+.|.+...
T Consensus 188 ~~~vi~ng~~~~~~~~~~~ 206 (398)
T cd03800 188 RIRVVPPGVDLERFTPYGR 206 (398)
T ss_pred ccEEECCCCCccceecccc
Confidence 7999999999998877543
No 9
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.76 E-value=1.6e-17 Score=172.04 Aligned_cols=206 Identities=25% Similarity=0.303 Sum_probs=136.4
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCC
Q 008531 279 VVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTK 358 (562)
Q Consensus 279 IliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~ 358 (562)
|++++.|+. +..++++.+.||..+||.+++++|.+ +|| +|+|+|+..+...+ ...+ + .+
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~GG~e~~v~~la~~L~~--------~G~----~V~v~~~~~~~~~~----~~~~-~--~~ 59 (405)
T TIGR03449 1 VAMISMHTS--PLQQPGTGDAGGMNVYILETATELAR--------RGI----EVDIFTRATRPSQP----PVVE-V--AP 59 (405)
T ss_pred CeEEeccCC--ccccCCCcCCCCceehHHHHHHHHhh--------CCC----EEEEEecccCCCCC----Cccc-c--CC
Confidence 678999985 34556777889999999999999887 899 99999986432211 1111 1 24
Q ss_pred CcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCC
Q 008531 359 YSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 359 gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSL 438 (562)
+++|+|++..+..+ .++..+..++..|...+.+.+......+||+||+|+|.++.+|..+++.+++|+|+|.|++
T Consensus 60 ~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~ 134 (405)
T TIGR03449 60 GVRVRNVVAGPYEG-----LDKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTL 134 (405)
T ss_pred CcEEEEecCCCccc-----CCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccch
Confidence 89999998776421 1112222333445444554443333458999999999999999999999999999999987
Q ss_pred CcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCc
Q 008531 439 EKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPK 518 (562)
Q Consensus 439 e~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpK 518 (562)
...+. .++.... ..........|..+++.||.||++|..... +....| +....|
T Consensus 135 ~~~~~----~~~~~~~-~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~---~~~~~~------------------~~~~~k 188 (405)
T TIGR03449 135 AAVKN----AALADGD-TPEPEARRIGEQQLVDNADRLIANTDEEAR---DLVRHY------------------DADPDR 188 (405)
T ss_pred HHHHH----HhccCCC-CCchHHHHHHHHHHHHhcCeEEECCHHHHH---HHHHHc------------------CCChhh
Confidence 53221 0110000 000011223577789999999999987654 122223 122459
Q ss_pred eEEecCCCccCCccCCCh
Q 008531 519 FNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 519 i~VIPpGVD~e~F~P~~~ 536 (562)
+.+||||||.+.|.|.+.
T Consensus 189 i~vi~ngvd~~~~~~~~~ 206 (405)
T TIGR03449 189 IDVVAPGADLERFRPGDR 206 (405)
T ss_pred EEEECCCcCHHHcCCCcH
Confidence 999999999999887543
No 10
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.72 E-value=1.3e-16 Score=171.16 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=136.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCccccccee---
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK--- 353 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~--- 353 (562)
|||+++|++.++ . .-+||+..+|.+|++||++ +|| +|.|+|+..+....... ...+.
T Consensus 1 m~i~~vs~E~~P--~-----~k~GGl~~~v~~L~~aL~~--------~G~----~v~v~~p~y~~~~~~~~-~~~~~~~~ 60 (473)
T TIGR02095 1 MRVLFVAAEMAP--F-----AKTGGLADVVGALPKALAA--------LGH----DVRVLLPAYGCIEDEVD-DQVKVVEL 60 (473)
T ss_pred CeEEEEEecccc--c-----cCcCcHHHHHHHHHHHHHH--------cCC----eEEEEecCCcChhhhhc-cCeEEEEE
Confidence 799999999642 1 2599999999999999997 899 99999998764211000 00000
Q ss_pred --e-------------cCCCCcEEEEecCCCCCcccc-c-ccC--ccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc
Q 008531 354 --V-------------YGTKYSDILRVPFRTEKGVVR-K-WIS--RFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS 414 (562)
Q Consensus 354 --i-------------~~~~gv~I~RVP~~~~~~~~~-~-~is--r~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw 414 (562)
+ ...+|+.+++|..... +-+ . ..+ ..+.......|...+.+.+.+ .+.+|||||+|+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~--~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~-~~~~~DiiH~hdw 137 (473)
T TIGR02095 61 VDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSL--FDRPGGIYGDDYPDNAERFAFFSRAAAELLSG-LGWQPDVVHAHDW 137 (473)
T ss_pred EEEeecCceeEEEEEEEEECCceEEEEECHHH--cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-cCCCCCEEEECCc
Confidence 0 1114788888865431 000 0 000 112222234466666666643 4679999999999
Q ss_pred ChHHHHHHHHHhcC---CcEEEEecCCCcCcCCCC------cchhcccC-cccccchhHHHHHHHHhhCCEEEecCHHHH
Q 008531 415 DGNIVASLLAHKLG---VTQCTIAHALEKTKYPDS------DIYWKNLD-DKYHFSCQFTADLIAMNHTDFIITSTFQEI 484 (562)
Q Consensus 415 dsGlVA~lLArklg---VP~V~T~HSLe~~Ky~~s------~~~w~~~e-~~y~~s~rf~aE~~amn~AD~IIaSS~qEi 484 (562)
.+++++..+++.++ +|+|+|.|++........ +..|.... ....+..++...+.+++.||.|+|+|....
T Consensus 138 ~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~ 217 (473)
T TIGR02095 138 HTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYA 217 (473)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHH
Confidence 99999999999987 999999999874322111 11111100 011112245567789999999999997544
Q ss_pred hcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 485 AGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 485 ~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
+. ...... .+.+.+.++ ....|+.+||||||.+.|.|..
T Consensus 218 ~e---i~~~~~---~~~l~~~l~------~~~~ki~~I~NGid~~~~~p~~ 256 (473)
T TIGR02095 218 RE---ILTPEF---GYGLDGVLK------ARSGKLRGILNGIDTEVWNPAT 256 (473)
T ss_pred HH---hcCCcC---CccchhHHH------hcCCCeEEEeCCCCccccCCCC
Confidence 31 111110 111112221 1234999999999999999853
No 11
>PLN02316 synthase/transferase
Probab=99.70 E-value=5.1e-16 Score=180.87 Aligned_cols=193 Identities=16% Similarity=0.032 Sum_probs=127.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCC-Ccccccc-eee
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVG-TTCGQRL-EKV 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~g-t~~~q~~-E~i 354 (562)
|||++||+|..+ . ..|||+..+|..|++||++ +|| +|.|+|+..+.... ....... ..+
T Consensus 588 M~Il~VSsE~~P--~-----aKvGGLgDVV~sLp~ALa~--------~Gh----~V~VitP~Y~~i~~~~~~~~~~~~~~ 648 (1036)
T PLN02316 588 MHIVHIAVEMAP--I-----AKVGGLGDVVTSLSRAVQD--------LNH----NVDIILPKYDCLNLSHVKDLHYQRSY 648 (1036)
T ss_pred cEEEEEEcccCC--C-----CCcCcHHHHHHHHHHHHHH--------cCC----EEEEEecCCcccchhhcccceEEEEe
Confidence 899999999753 1 2589999999999999987 899 99999998753100 0000000 000
Q ss_pred -----------cCCCCcEEEEecCCCCCcccccccCccCch------HHHHHHHHHHHHHHHHHcCCCCCEEEecCcChH
Q 008531 355 -----------YGTKYSDILRVPFRTEKGVVRKWISRFEVW------PYLETYTEDVAVEIAKELQGKPDLIIGNYSDGN 417 (562)
Q Consensus 355 -----------~~~~gv~I~RVP~~~~~~~~~~~isr~~l~------pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsG 417 (562)
...+|+.+++|.... .+..+..++ .....|+..++..+. ..+.+|||||+|+|.++
T Consensus 649 ~~~~~~~~v~~~~~~GV~vyfl~~~~------~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~-~~~~~PDIIHaHDW~ta 721 (1036)
T PLN02316 649 SWGGTEIKVWFGKVEGLSVYFLEPQN------GMFWAGCVYGCRNDGERFGFFCHAALEFLL-QSGFHPDIIHCHDWSSA 721 (1036)
T ss_pred ccCCEEEEEEEEEECCcEEEEEeccc------cccCCCCCCCchhHHHHHHHHHHHHHHHHH-hcCCCCCEEEECCChHH
Confidence 011467777776431 122222223 234456666666653 34679999999999999
Q ss_pred HHHHHHHHhc------CCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccc
Q 008531 418 IVASLLAHKL------GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTV 491 (562)
Q Consensus 418 lVA~lLArkl------gVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l 491 (562)
++|.++++.+ ++|+|+|.|+++... ++ -..++..||.|||+|.....+ ..
T Consensus 722 lva~llk~~~~~~~~~~~p~V~TiHnl~~~~---------------n~------lk~~l~~AD~ViTVS~tya~E---I~ 777 (1036)
T PLN02316 722 PVAWLFKDHYAHYGLSKARVVFTIHNLEFGA---------------NH------IGKAMAYADKATTVSPTYSRE---VS 777 (1036)
T ss_pred HHHHHHHHhhhhhccCCCCEEEEeCCcccch---------------hH------HHHHHHHCCEEEeCCHHHHHH---HH
Confidence 9999998865 499999999865321 00 124789999999999765431 11
Q ss_pred cccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 492 GQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 492 ~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
+.+ ++.....|+.+||||||++.|.|..
T Consensus 778 ~~~----------------~l~~~~~Kl~vI~NGID~~~w~P~t 805 (1036)
T PLN02316 778 GNS----------------AIAPHLYKFHGILNGIDPDIWDPYN 805 (1036)
T ss_pred hcc----------------CcccccCCEEEEECCccccccCCcc
Confidence 211 1121235999999999999998853
No 12
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.64 E-value=4.8e-15 Score=157.87 Aligned_cols=226 Identities=15% Similarity=0.084 Sum_probs=136.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCccccccee----
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK---- 353 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~---- 353 (562)
||+++|+..++ ..-+||...++.+|++||++ +|| +|.|+|+..+..... .....+.
T Consensus 1 ~Il~v~~E~~p-------~~k~GGl~~~~~~L~~aL~~--------~G~----~V~Vi~p~y~~~~~~-~~~~~~~~~~~ 60 (476)
T cd03791 1 KVLFVASEVAP-------FAKTGGLGDVVGALPKALAK--------LGH----DVRVIMPKYGRILDE-LRGQLLVLRLF 60 (476)
T ss_pred CEEEEEccccc-------cccCCcHHHHHHHHHHHHHH--------CCC----eEEEEecCCcchhhH-hccCeEEEEEE
Confidence 69999988542 12799999999999999987 899 999999876543110 0000000
Q ss_pred --------------ecCCCCcEEEEecCCCCCc--cc--ccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcC
Q 008531 354 --------------VYGTKYSDILRVPFRTEKG--VV--RKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSD 415 (562)
Q Consensus 354 --------------i~~~~gv~I~RVP~~~~~~--~~--~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywd 415 (562)
....+|+.+++++...... .. ..+.+-.+-......|+..+.+.+.+ .+.+|||||+|.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~-~~~~pDviH~hd~~ 139 (476)
T cd03791 61 GVPVGGRPEYVGVFELPVDGVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRR-LGWKPDIIHCHDWH 139 (476)
T ss_pred eeccCCceeEEEEEEEEeCCceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHh-cCCCCcEEEECchH
Confidence 0012478888886543210 00 00011011111223366666666643 36799999999999
Q ss_pred hHHHHHHHHHhc------CCcEEEEecCCCcCcCCCC------cchhc--ccCcccccchhHHHHHHHHhhCCEEEecCH
Q 008531 416 GNIVASLLAHKL------GVTQCTIAHALEKTKYPDS------DIYWK--NLDDKYHFSCQFTADLIAMNHTDFIITSTF 481 (562)
Q Consensus 416 sGlVA~lLArkl------gVP~V~T~HSLe~~Ky~~s------~~~w~--~~e~~y~~s~rf~aE~~amn~AD~IIaSS~ 481 (562)
+++++..+++.+ ++|+|+|.|++........ +..|. .......+..++..++.+++.||.|||+|.
T Consensus 140 t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~ 219 (476)
T cd03791 140 TGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSP 219 (476)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCH
Confidence 999999999885 9999999999864332110 01110 000112234456678899999999999986
Q ss_pred HHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCCh
Q 008531 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 482 qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
...+. ....+.+ +.|-+++ .....|+.+||||||.+.|.|...
T Consensus 220 ~~~~~---i~~~~~~---~gl~~~~------~~~~~ki~~I~NGid~~~~~p~~~ 262 (476)
T cd03791 220 TYARE---ILTPEFG---EGLDGLL------RARAGKLSGILNGIDYDVWNPATD 262 (476)
T ss_pred hHHHH---hCCCCCC---cchHHHH------HhccCCeEEEeCCCcCcccCcccc
Confidence 44331 1111100 0011111 112359999999999999998643
No 13
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.63 E-value=2.1e-15 Score=133.10 Aligned_cols=160 Identities=16% Similarity=0.240 Sum_probs=89.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccC
Q 008531 300 GGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWIS 379 (562)
Q Consensus 300 GGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~is 379 (562)
||..+|+.+++++|.+ +|| +|.|+|+..++. ...+.. .++.++++|+..... .
T Consensus 1 GG~~~~~~~l~~~L~~--------~G~----~V~v~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~-----~- 53 (160)
T PF13579_consen 1 GGIERYVRELARALAA--------RGH----EVTVVTPQPDPE------DDEEEE---DGVRVHRLPLPRRPW-----P- 53 (160)
T ss_dssp SHHHHHHHHHHHHHHH--------TT-----EEEEEEE---GG------G-SEEE---TTEEEEEE--S-SSS-----G-
T ss_pred CCHHHHHHHHHHHHHH--------CCC----EEEEEecCCCCc------cccccc---CCceEEeccCCccch-----h-
Confidence 8999999999999987 899 999999765432 111112 379999999887521 0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCccccc
Q 008531 380 RFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHF 459 (562)
Q Consensus 380 r~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~ 459 (562)
...+. +...+.+.+ .....+||+||+|++.+++++.++++..++|+|+|.|+...... ..|..
T Consensus 54 -~~~~~----~~~~~~~~l-~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~~------- 116 (160)
T PF13579_consen 54 -LRLLR----FLRRLRRLL-AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFRRG----SRWKR------- 116 (160)
T ss_dssp -GGHCC----HHHHHHHHC-HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T----------HHH-------
T ss_pred -hhhHH----HHHHHHHHH-hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchhhc----cchhh-------
Confidence 00111 122233333 22356999999999888888888887899999999997542221 11110
Q ss_pred chhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCC
Q 008531 460 SCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG 525 (562)
Q Consensus 460 s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpG 525 (562)
...-..|+.+++.||.||+.|....+ .+.++ +++..|+.|||||
T Consensus 117 ~~~~~~~~~~~~~ad~vi~~S~~~~~----~l~~~------------------g~~~~ri~vipnG 160 (160)
T PF13579_consen 117 RLYRWLERRLLRRADRVIVVSEAMRR----YLRRY------------------GVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHHHHHHH-SEEEESSHHHHH----HHHHH---------------------GGGEEE----
T ss_pred HHHHHHHHHHHhcCCEEEECCHHHHH----HHHHh------------------CCCCCcEEEeCcC
Confidence 01113588899999999999987765 23333 2334599999998
No 14
>PRK14098 glycogen synthase; Provisional
Probab=99.62 E-value=9.1e-15 Score=159.47 Aligned_cols=232 Identities=16% Similarity=0.174 Sum_probs=130.7
Q ss_pred cCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCc--cc
Q 008531 271 GRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT--CG 348 (562)
Q Consensus 271 ~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~--~~ 348 (562)
+| || |||+++|..-.+ ...|||..=.+-.|.+||.+ +|| +|.|+++..+.-.... ..
T Consensus 2 ~~-~~-~~il~v~~E~~p-------~~k~Ggl~dv~~~Lp~al~~--------~g~----~v~v~~P~y~~~~~~~~~~~ 60 (489)
T PRK14098 2 SR-RN-FKVLYVSGEVSP-------FVRVSALADFMASFPQALEE--------EGF----EARIMMPKYGTINDRKFRLH 60 (489)
T ss_pred CC-CC-cEEEEEeecchh-------hcccchHHHHHHHHHHHHHH--------CCC----eEEEEcCCCCchhhhhhccc
Confidence 45 77 899999987542 24899998666666666655 899 9999998775432100 00
Q ss_pred c--cceee--cCCCCcEEEEec--CCCCCc---c-c--ccccCccCchH-------H------HHHHHHHHHHHHHHHcC
Q 008531 349 Q--RLEKV--YGTKYSDILRVP--FRTEKG---V-V--RKWISRFEVWP-------Y------LETYTEDVAVEIAKELQ 403 (562)
Q Consensus 349 q--~~E~i--~~~~gv~I~RVP--~~~~~~---~-~--~~~isr~~l~p-------y------Le~fa~~~~~~i~~~~~ 403 (562)
. ....+ .....+.+.++- ..+..+ + + +.+..|..+|. | .-.|+..+++.+ ...+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~-~~~~ 139 (489)
T PRK14098 61 DVLRLSDIEVPLKEKTDLLHVKVTALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETL-QRLG 139 (489)
T ss_pred cceEEEEEEEeecCeeEEEEEEEecccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHH-HhcC
Confidence 0 00011 000122333321 111000 0 0 12233433331 1 123444555555 3346
Q ss_pred CCCCEEEecCcChHHHHHHHHHhc-------CCcEEEEecCCCcCcCCCCcch-----hcccCcccccchhHHHHHHHHh
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKL-------GVTQCTIAHALEKTKYPDSDIY-----WKNLDDKYHFSCQFTADLIAMN 471 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArkl-------gVP~V~T~HSLe~~Ky~~s~~~-----w~~~e~~y~~s~rf~aE~~amn 471 (562)
++|||||+|+|.+|+++.++++++ ++|+|+|.|++........... |...........++...+.+++
T Consensus 140 ~~pDiiH~hdw~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~ 219 (489)
T PRK14098 140 WKPDIIHCHDWYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVE 219 (489)
T ss_pred CCCCEEEecCcHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHH
Confidence 799999999999999999999876 8999999999864322110000 0000000001123445677899
Q ss_pred hCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 472 HTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 472 ~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.||.|||+|.....+ ..... ...+.|+++.+. ...|+.+||||||.+.|.|..
T Consensus 220 ~ad~VitVS~~~a~e---i~~~~--~~~~gl~~~l~~------~~~kl~~I~NGID~~~~~p~~ 272 (489)
T PRK14098 220 HADLLTTTSPRYAEE---IAGDG--EEAFGLDKVLEE------RKMRLHGILNGIDTRQWNPST 272 (489)
T ss_pred hcCcceeeCHHHHHH---hCcCC--CCCcChHHHHHh------cCCCeeEEeCCccccccCCcc
Confidence 999999999755541 11110 012233444321 245999999999999999865
No 15
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.55 E-value=1.3e-13 Score=144.25 Aligned_cols=202 Identities=15% Similarity=0.104 Sum_probs=122.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCC-c---ccc--c
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGT-T---CGQ--R 350 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt-~---~~q--~ 350 (562)
|||+++|.+.. |+.||...++.+++++|.+ +|| +|+|+|+...-+.+. . ... .
T Consensus 1 mkIlii~~~~~---------P~~~g~~~~~~~l~~~L~~--------~G~----~V~vit~~~~~~~~~~~~~~~~~~~~ 59 (412)
T PRK10307 1 MKILVYGINYA---------PELTGIGKYTGEMAEWLAA--------RGH----EVRVITAPPYYPQWRVGEGYSAWRYR 59 (412)
T ss_pred CeEEEEecCCC---------CCccchhhhHHHHHHHHHH--------CCC----eEEEEecCCCCCCCCCCcccccccce
Confidence 79999997743 5788999999988888887 899 999999752111100 0 000 1
Q ss_pred ceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc--ChHHHHHHHHHhcC
Q 008531 351 LEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS--DGNIVASLLAHKLG 428 (562)
Q Consensus 351 ~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw--dsGlVA~lLArklg 428 (562)
.|. .+|++|+|+|..... ....+. .+.. +..|.......+.+....+||+||+|.. .++.+|.++++++|
T Consensus 60 ~~~---~~~i~v~r~~~~~~~--~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~ 131 (412)
T PRK10307 60 RES---EGGVTVWRCPLYVPK--QPSGLK--RLLH-LGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSG 131 (412)
T ss_pred eee---cCCeEEEEccccCCC--CccHHH--HHHH-HHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhC
Confidence 121 248999999875321 000000 1111 1223333333333322368999999974 45678889999999
Q ss_pred CcEEEEecCCCcCcCCCCcchhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCce
Q 008531 429 VTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLY 506 (562)
Q Consensus 429 VP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Ly 506 (562)
+|+|++.|-.........+. + +.....++ ..|+++++.||.||+.|....+ .+.++
T Consensus 132 ~~~v~~~~d~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~----~~~~~------------ 189 (412)
T PRK10307 132 ARTWLHIQDYEVDAAFGLGL-L-----KGGKVARLATAFERSLLRRFDNVSTISRSMMN----KAREK------------ 189 (412)
T ss_pred CCEEEEeccCCHHHHHHhCC-c-----cCcHHHHHHHHHHHHHHhhCCEEEecCHHHHH----HHHHc------------
Confidence 99999888432100000000 0 00011122 2588899999999999987664 22222
Q ss_pred eeecccccCCCceEEecCCCccCCccCCC
Q 008531 507 RVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 507 r~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
| ....|+.|||||||.+.|.|..
T Consensus 190 ----~--~~~~~i~vi~ngvd~~~~~~~~ 212 (412)
T PRK10307 190 ----G--VAAEKVIFFPNWSEVARFQPVA 212 (412)
T ss_pred ----C--CCcccEEEECCCcCHhhcCCCC
Confidence 2 2234999999999999998753
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=99.55 E-value=1.9e-13 Score=157.83 Aligned_cols=246 Identities=15% Similarity=0.123 Sum_probs=145.8
Q ss_pred HHHHhhcCCCcCchhHHhcCC----CccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 008531 253 LLLDLLEAPDPCTLETFLGRI----PMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDI 328 (562)
Q Consensus 253 ~l~~~l~ap~p~~le~f~~r~----pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~ 328 (562)
.-.++.+.+|...+..|+.-. .+.|||+++|..-.+ ..-|||..-+|-.|.+||++ +||
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP-------~aKtGGLaDVv~sLPkAL~~--------~Gh-- 516 (977)
T PLN02939 454 AYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAP-------VAKVGGLADVVSGLGKALQK--------KGH-- 516 (977)
T ss_pred HHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEccccc-------ccccccHHHHHHHHHHHHHH--------cCC--
Confidence 356788899998888877432 245899999987643 23699999999988888887 899
Q ss_pred CCeEEEEecCCCCCC-CCccccc-ce-----eecC-----------CCCcEEEEecCCCCCcccccccCccCchHH----
Q 008531 329 TPQILIITRLLPDAV-GTTCGQR-LE-----KVYG-----------TKYSDILRVPFRTEKGVVRKWISRFEVWPY---- 386 (562)
Q Consensus 329 ~~~V~V~TR~~~~~~-gt~~~q~-~E-----~i~~-----------~~gv~I~RVP~~~~~~~~~~~isr~~l~py---- 386 (562)
+|.|+++..+... ....... .+ .+.+ -+|+.++.|...... .+..|..+|.|
T Consensus 517 --dV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~----~fF~R~~iYg~~Dn~ 590 (977)
T PLN02939 517 --LVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPS----KFFWRAQYYGEHDDF 590 (977)
T ss_pred --eEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCch----hccCCCCCCCCccHH
Confidence 9999999875331 0000000 00 0100 135666666421100 12334444422
Q ss_pred --HHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHh------cCCcEEEEecCCCcCcC-CC-----Ccchhcc
Q 008531 387 --LETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK------LGVTQCTIAHALEKTKY-PD-----SDIYWKN 452 (562)
Q Consensus 387 --Le~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArk------lgVP~V~T~HSLe~~Ky-~~-----s~~~w~~ 452 (562)
.-.|.+.++..+.. .+++|||||+|.|.+|+++.++.+. -++|.|+|.|.+++... .. .|+.|..
T Consensus 591 ~RF~~FsrAaLe~~~~-~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~ 669 (977)
T PLN02939 591 KRFSYFSRAALELLYQ-SGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQ 669 (977)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHH
Confidence 22355556555533 4679999999999999987665543 35899999999975432 11 1111111
Q ss_pred cC--c--ccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCcc
Q 008531 453 LD--D--KYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADM 528 (562)
Q Consensus 453 ~e--~--~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~ 528 (562)
+. + ..++..++-.-+..+..||.|+|+|+.-..+ ....++ ..|.+++ .....|+.+||||||.
T Consensus 670 l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~E---I~te~G----~GL~~~L------~~~~~Kl~gIlNGID~ 736 (977)
T PLN02939 670 LDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQE---VRSEGG----RGLQDTL------KFHSKKFVGILNGIDT 736 (977)
T ss_pred ccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHH---HHHHhc----cchHHHh------ccccCCceEEecceeh
Confidence 10 0 0012223333334566899999998654431 111111 1122233 2234599999999999
Q ss_pred CCccCCC
Q 008531 529 SIYFPYT 535 (562)
Q Consensus 529 e~F~P~~ 535 (562)
+.|.|..
T Consensus 737 e~wnPat 743 (977)
T PLN02939 737 DTWNPST 743 (977)
T ss_pred hhcCCcc
Confidence 9999864
No 17
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.49 E-value=5.4e-13 Score=139.50 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=115.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++... .|+.||...++.+++++|.+ +|| +|.|+|+..++..+ .. .. .
T Consensus 1 kI~~v~~~~---------~p~~GG~e~~~~~la~~L~~--------~G~----~V~v~~~~~~~~~~----~~--~~--~ 51 (398)
T cd03796 1 RICMVSDFF---------YPNLGGVETHIYQLSQCLIK--------RGH----KVVVITHAYGNRVG----IR--YL--T 51 (398)
T ss_pred CeeEEeecc---------ccccccHHHHHHHHHHHHHH--------cCC----eeEEEeccCCcCCC----cc--cc--c
Confidence 688888643 25789999999999998887 899 99999976433211 11 11 2
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChH--HHHHHHHHhcCCcEEEEe
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGN--IVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsG--lVA~lLArklgVP~V~T~ 435 (562)
.++.|+++|...... . ..+. ....+...+.+.+. +.+|||||+|.+.++ ..|.++++.+++|+|+|.
T Consensus 52 ~~i~v~~~p~~~~~~---~----~~~~-~~~~~~~~l~~~~~---~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~ 120 (398)
T cd03796 52 NGLKVYYLPFVVFYN---Q----STLP-TFFGTFPLLRNILI---RERITIVHGHQAFSALAHEALLHARTMGLKTVFTD 120 (398)
T ss_pred CceeEEEecceeccC---C----cccc-chhhhHHHHHHHHH---hcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEe
Confidence 378999998764210 0 0111 11112222333332 358999999986443 357788999999999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|+..... +. +. . ... ..+...+++||.||+.|....+. ...++ + ..
T Consensus 121 h~~~~~~----~~-~~-----~-~~~--~~~~~~~~~~d~ii~~s~~~~~~---~~~~~----------------~--~~ 166 (398)
T cd03796 121 HSLFGFA----DA-SS-----I-HTN--KLLRFSLADVDHVICVSHTSKEN---TVLRA----------------S--LD 166 (398)
T ss_pred ccccccc----ch-hh-----H-Hhh--HHHHHhhccCCEEEEecHhHhhH---HHHHh----------------C--CC
Confidence 9853211 00 00 0 001 13456789999999998765430 01111 1 12
Q ss_pred CCceEEecCCCccCCccCCC
Q 008531 516 DPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~ 535 (562)
..|+.+||||+|.+.|.|..
T Consensus 167 ~~k~~vi~ngvd~~~f~~~~ 186 (398)
T cd03796 167 PERVSVIPNAVDSSDFTPDP 186 (398)
T ss_pred hhhEEEEcCccCHHHcCCCc
Confidence 34899999999999887753
No 18
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.45 E-value=2.3e-12 Score=132.02 Aligned_cols=187 Identities=19% Similarity=0.169 Sum_probs=115.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCC-CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeec
Q 008531 277 FNVVILTPHGYFAQDDVLGYPD-TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 355 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pD-tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~ 355 (562)
|||++++... .|+ .||..+++.+++++|.+ + | +|.|+|...+ ...
T Consensus 1 mkI~~i~~~~---------~p~~~GG~~~~v~~l~~~l~~--------~-~----~v~v~~~~~~---------~~~--- 46 (388)
T TIGR02149 1 MKVTVLTREY---------PPNVYGGAGVHVEELTRELAR--------L-M----DVDVRCFGDQ---------RFD--- 46 (388)
T ss_pred CeeEEEeccc---------CccccccHhHHHHHHHHHHHH--------h-c----CeeEEcCCCc---------hhc---
Confidence 7999998542 235 49999999999999976 3 5 5666764311 111
Q ss_pred CCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 356 GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 356 ~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
.+++.|+|++..... ......+..+..++.. .....+||+||+|.|.++++|.++++..|+|+|+|.
T Consensus 47 -~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~ 113 (388)
T TIGR02149 47 -SEGLTVKGYRPWSEL---------KEANKALGTFSVDLAM---ANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTA 113 (388)
T ss_pred -CCCeEEEEecChhhc---------cchhhhhhhhhHHHHH---hhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEe
Confidence 136888887644320 1111223333222221 112347999999999888888888888999999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|++...+..... .....+.+.. ..|+.+++.||.||+.|....+. ....|. |+ .
T Consensus 114 h~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~ad~vi~~S~~~~~~---~~~~~~---------------~~--~ 167 (388)
T TIGR02149 114 HSLEPLRPWKEE----QLGGGYKLSS--WAEKTAIEAADRVIAVSGGMRED---ILKYYP---------------DL--D 167 (388)
T ss_pred eccccccccccc----ccccchhHHH--HHHHHHHhhCCEEEEccHHHHHH---HHHHcC---------------CC--C
Confidence 987532110000 0000111111 35788999999999999866541 112221 11 2
Q ss_pred CCceEEecCCCccCCccCCCh
Q 008531 516 DPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~~ 536 (562)
..|+.|||||+|.+.|.|...
T Consensus 168 ~~~i~vi~ng~~~~~~~~~~~ 188 (388)
T TIGR02149 168 PEKVHVIYNGIDTKEYKPDDG 188 (388)
T ss_pred cceEEEecCCCChhhcCCCch
Confidence 358999999999999887543
No 19
>PRK14099 glycogen synthase; Provisional
Probab=99.45 E-value=2.5e-12 Score=140.36 Aligned_cols=230 Identities=13% Similarity=0.077 Sum_probs=121.0
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCccc-ccceee
Q 008531 276 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCG-QRLEKV 354 (562)
Q Consensus 276 ~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~-q~~E~i 354 (562)
.|||+++|..-.+ ...|||..=.+-.|.+||++ +|| +|.|+++..+.-...... .....+
T Consensus 3 ~~~il~v~~E~~p-------~~k~ggl~dv~~~lp~~l~~--------~g~----~v~v~~P~y~~~~~~~~~~~~~~~~ 63 (485)
T PRK14099 3 PLRVLSVASEIFP-------LIKTGGLADVAGALPAALKA--------HGV----EVRTLVPGYPAVLAGIEDAEQVHSF 63 (485)
T ss_pred CcEEEEEEecccc-------ccCCCcHHHHHHHHHHHHHH--------CCC----cEEEEeCCCcchhhhhcCceEEEEE
Confidence 3899999977542 34899998666666666665 899 999999876543100000 001111
Q ss_pred cC--CCCcEEEEecCCCCCcc-c--ccccCccC-ch------HH---HHH---HHHHHHHHHHHH-cCCCCCEEEecCcC
Q 008531 355 YG--TKYSDILRVPFRTEKGV-V--RKWISRFE-VW------PY---LET---YTEDVAVEIAKE-LQGKPDLIIGNYSD 415 (562)
Q Consensus 355 ~~--~~gv~I~RVP~~~~~~~-~--~~~isr~~-l~------py---Le~---fa~~~~~~i~~~-~~~~PDLIHaHywd 415 (562)
.. ...++|.........-+ + +.+..|.. ++ +| .++ |...++..+... .+.+|||||+|+|.
T Consensus 64 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~ 143 (485)
T PRK14099 64 PDLFGGPARLLAARAGGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQ 143 (485)
T ss_pred eeeCCceEEEEEEEeCCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcH
Confidence 10 00122222111100000 0 12222221 22 12 122 333333322111 24699999999999
Q ss_pred hHHHHHHHHH--hcCCcEEEEecCCCcCcCCCC------cchhcccC-cccccchhHHHHHHHHhhCCEEEecCHHHHhc
Q 008531 416 GNIVASLLAH--KLGVTQCTIAHALEKTKYPDS------DIYWKNLD-DKYHFSCQFTADLIAMNHTDFIITSTFQEIAG 486 (562)
Q Consensus 416 sGlVA~lLAr--klgVP~V~T~HSLe~~Ky~~s------~~~w~~~e-~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~ 486 (562)
+|+++.+++. +.++|.|+|.|.+........ +..|+... ....+...+...+.+++.||.|||+|..-..+
T Consensus 144 ~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~e 223 (485)
T PRK14099 144 AGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALE 223 (485)
T ss_pred HHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHH
Confidence 9999988874 357999999999864321100 11111000 00001112224677899999999999654431
Q ss_pred ccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCCh
Q 008531 487 SKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 487 ~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
....+. .+.+.++++ ....|+.+||||||.+.|.|.+.
T Consensus 224 ---i~~~~~---g~gl~~~l~------~~~~ki~vI~NGID~~~f~p~~~ 261 (485)
T PRK14099 224 ---IQGPEA---GMGLDGLLR------QRADRLSGILNGIDTAVWNPATD 261 (485)
T ss_pred ---HhcccC---CcChHHHHH------hhCCCeEEEecCCchhhcccccc
Confidence 111111 011111221 12359999999999999998653
No 20
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.41 E-value=5.6e-12 Score=135.42 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||+++. |..+ .+..||+..++.+++++|.+ +|| +|.|+|...... +..
T Consensus 59 mrI~~~~-~~~~-------~~~~gG~~~~~~~l~~~L~~--------~G~----eV~vlt~~~~~~---------~~~-- 107 (465)
T PLN02871 59 RRIALFV-EPSP-------FSYVSGYKNRFQNFIRYLRE--------MGD----EVLVVTTDEGVP---------QEF-- 107 (465)
T ss_pred ceEEEEE-CCcC-------CcccccHHHHHHHHHHHHHH--------CCC----eEEEEecCCCCC---------ccc--
Confidence 7999996 3221 13679999999988888876 899 999999753211 111
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEe
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~ 435 (562)
.++.|+++...+.+ +.... ++.-.+...+.+.+. +.+||+||+|.. ..+.++..+++..|+|+|+|+
T Consensus 108 -~g~~v~~~~~~~~~-----~~~~~---~~~~~~~~~l~~~i~---~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 108 -HGAKVIGSWSFPCP-----FYQKV---PLSLALSPRIISEVA---RFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred -cCceeeccCCcCCc-----cCCCc---eeeccCCHHHHHHHH---hCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 25666665443321 11110 000011113444442 358999999974 445667778899999999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchh-HHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeeccccc
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQ-FTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDV 514 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~r-f~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v 514 (562)
|+............| ..+. ...+++..+.||.||++|....+ .+.++ |+ .
T Consensus 176 h~~~~~~~~~~~~~~--------~~~~~~~~~r~~~~~ad~ii~~S~~~~~----~l~~~----------------~~-~ 226 (465)
T PLN02871 176 HTHVPVYIPRYTFSW--------LVKPMWDIIRFLHRAADLTLVTSPALGK----ELEAA----------------GV-T 226 (465)
T ss_pred ecCchhhhhcccchh--------hHHHHHHHHHHHHhhCCEEEECCHHHHH----HHHHc----------------CC-C
Confidence 985322110000000 0111 12456788999999999987654 12211 11 1
Q ss_pred CCCceEEecCCCccCCccCCC
Q 008531 515 FDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 515 ~dpKi~VIPpGVD~e~F~P~~ 535 (562)
...|+.|||||||.+.|.|..
T Consensus 227 ~~~kv~vi~nGvd~~~f~p~~ 247 (465)
T PLN02871 227 AANRIRVWNKGVDSESFHPRF 247 (465)
T ss_pred CcCeEEEeCCccCccccCCcc
Confidence 235999999999999998754
No 21
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.41 E-value=2.6e-12 Score=115.22 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccc
Q 008531 297 PDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRK 376 (562)
Q Consensus 297 pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~ 376 (562)
+..||...|+.+++++|++ +|| +|.|+|....+... .. . .......+....
T Consensus 9 ~~~GG~e~~~~~l~~~l~~--------~G~----~v~v~~~~~~~~~~----~~---~----~~~~~~~~~~~~------ 59 (177)
T PF13439_consen 9 PNIGGAERVVLNLARALAK--------RGH----EVTVVSPGVKDPIE----EE---L----VKIFVKIPYPIR------ 59 (177)
T ss_dssp TSSSHHHHHHHHHHHHHHH--------TT-----EEEEEESS-TTS-S----ST---E----EEE---TT-SST------
T ss_pred CCCChHHHHHHHHHHHHHH--------CCC----EEEEEEcCCCccch----hh---c----cceeeeeecccc------
Confidence 3689999999999999987 899 99999876544310 00 0 011111111111
Q ss_pred ccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcC-cCCCCcchhcccCc
Q 008531 377 WISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKT-KYPDSDIYWKNLDD 455 (562)
Q Consensus 377 ~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~-Ky~~s~~~w~~~e~ 455 (562)
. . ..+...+...+.+.+.+ .+||+||+|.+.....+..... ++|.|.|.|+.... ..... ..|..
T Consensus 60 ~----~-~~~~~~~~~~~~~~i~~---~~~DiVh~~~~~~~~~~~~~~~--~~~~v~~~H~~~~~~~~~~~-~~~~~--- 125 (177)
T PF13439_consen 60 K----R-FLRSFFFMRRLRRLIKK---EKPDIVHIHGPPAFWIALLACR--KVPIVYTIHGPYFERRFLKS-KLSPY--- 125 (177)
T ss_dssp S----S---HHHHHHHHHHHHHHH---HT-SEEECCTTHCCCHHHHHHH--CSCEEEEE-HHH--HHTTTT-SCCCH---
T ss_pred c----c-cchhHHHHHHHHHHHHH---cCCCeEEecccchhHHHHHhcc--CCCEEEEeCCCccccccccc-ccchh---
Confidence 0 0 11112223345555533 3899999998533333333333 99999999986521 00000 00000
Q ss_pred ccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCcc
Q 008531 456 KYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYF 532 (562)
Q Consensus 456 ~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~ 532 (562)
..+.. ..+....+.+|.||++|....+ .+.+| +++..|+.|||||||+++|.
T Consensus 126 -~~~~~--~~~~~~~~~~~~ii~vS~~~~~----~l~~~------------------~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 126 -SYLNF--RIERKLYKKADRIIAVSESTKD----ELIKF------------------GIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp -HHHHH--CTTHHHHCCSSEEEESSHHHHH----HHHHH------------------T--SS-EEE----B-CCCH-
T ss_pred -hhhhh--hhhhhHHhcCCEEEEECHHHHH----HHHHh------------------CCcccCCEEEECCccHHHcC
Confidence 00011 1234458899999999986654 22223 23346999999999999984
No 22
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.40 E-value=8.7e-12 Score=126.20 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=108.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||++++. |..||..+++.+++++|++ +|| +|.|+|...+... . + .
T Consensus 1 mki~~~~~------------p~~gG~~~~~~~la~~L~~--------~G~----~v~v~~~~~~~~~------~-~---~ 46 (371)
T cd04962 1 MKIGIVCY------------PTYGGSGVVATELGKALAR--------RGH----EVHFITSSRPFRL------D-E---Y 46 (371)
T ss_pred CceeEEEE------------eCCCCccchHHHHHHHHHh--------cCC----ceEEEecCCCcch------h-h---h
Confidence 68999972 3579999999999998887 899 8999997543210 0 0 0
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHh----cCCcEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK----LGVTQC 432 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArk----lgVP~V 432 (562)
.++..++.++..... ......+.......+.+.+. +.+||+||+|++.....+..++++ .++|+|
T Consensus 47 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~i~---~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i 115 (371)
T cd04962 47 SPNIFFHEVEVPQYP--------LFQYPPYDLALASKIAEVAK---RYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVV 115 (371)
T ss_pred ccCeEEEEecccccc--------hhhcchhHHHHHHHHHHHHh---cCCccEEeecccCCccHHHHHHHHhcCcCCCcEE
Confidence 124454444432210 01111222333445555552 358999999986443333333332 389999
Q ss_pred EEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeeccc
Q 008531 433 TIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 512 (562)
Q Consensus 433 ~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi 512 (562)
+|.|+.......... ... ..++.+++.||.||+.|....+ .+.++ |
T Consensus 116 ~~~h~~~~~~~~~~~-----------~~~--~~~~~~~~~~d~ii~~s~~~~~----~~~~~-----------~------ 161 (371)
T cd04962 116 TTLHGTDITLVGQDP-----------SFQ--PATRFSIEKSDGVTAVSESLRQ----ETYEL-----------F------ 161 (371)
T ss_pred EEEcCCccccccccc-----------cch--HHHHHHHhhCCEEEEcCHHHHH----HHHHh-----------c------
Confidence 999986432211000 011 2356789999999999986553 11111 1
Q ss_pred ccCCCceEEecCCCccCCccCCCh
Q 008531 513 DVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 513 ~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
....++.|||||+|...|.|...
T Consensus 162 -~~~~~i~vi~n~~~~~~~~~~~~ 184 (371)
T cd04962 162 -DITKEIEVIPNFVDEDRFRPKPD 184 (371)
T ss_pred -CCcCCEEEecCCcCHhhcCCCch
Confidence 12458999999999988876543
No 23
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.34 E-value=1e-11 Score=137.91 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=80.5
Q ss_pred CCCCCEEEecCcChHHHHHHHH-HhcCCcEEEEecCCCcCcCCCCc---ch-------hcccCcccccchhHHHHHHHHh
Q 008531 403 QGKPDLIIGNYSDGNIVASLLA-HKLGVTQCTIAHALEKTKYPDSD---IY-------WKNLDDKYHFSCQFTADLIAMN 471 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLA-rklgVP~V~T~HSLe~~Ky~~s~---~~-------w~~~e~~y~~s~rf~aE~~amn 471 (562)
..+|||||+|.|++|+++..++ +..+||+|+|.|+++..++...| .+ |.+...+..+..+...|+.+..
T Consensus 146 ~~~~dViH~HeWm~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa~ 225 (590)
T cd03793 146 DEPAVVAHFHEWQAGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAAH 225 (590)
T ss_pred CCCCeEEEEcchhHhHHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHHh
Confidence 4689999999999999999999 77899999999999988762222 11 2222222344566668999999
Q ss_pred hCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 472 HTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 472 ~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.||++||+|.....+ ... || +. ++.. |||||+|.+.|.+..
T Consensus 226 ~Ad~fttVS~it~~E---~~~------------Ll------~~-~pd~-ViPNGid~~~f~~~~ 266 (590)
T cd03793 226 CAHVFTTVSEITAYE---AEH------------LL------KR-KPDV-VLPNGLNVKKFSALH 266 (590)
T ss_pred hCCEEEECChHHHHH---HHH------------Hh------CC-CCCE-EeCCCcchhhcccch
Confidence 999999999766542 111 33 22 2333 999999999998765
No 24
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.30 E-value=1e-11 Score=124.33 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=103.1
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCc-ccccceee--
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTT-CGQRLEKV-- 354 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~-~~q~~E~i-- 354 (562)
||+++|+...+ ..-+||....+..|++||++ +|| +|.|+++..+...... ....+..+
T Consensus 1 kIl~vt~E~~P-------~~k~GGLgdv~~~L~kaL~~--------~G~----~V~Vi~P~y~~~~~~~~~~~~~~~~~~ 61 (245)
T PF08323_consen 1 KILMVTSEYAP-------FAKVGGLGDVVGSLPKALAK--------QGH----DVRVIMPKYGFIDEEYFQLEPVRRLSV 61 (245)
T ss_dssp EEEEE-S-BTT-------TB-SSHHHHHHHHHHHHHHH--------TT-----EEEEEEE-THHHHHHCTTEEEEEEES-
T ss_pred CEEEEEcccCc-------ccccCcHhHHHHHHHHHHHh--------cCC----eEEEEEccchhhhhhhhcceEEEEecc
Confidence 79999988532 13899999999999999987 899 9999998774321100 00000000
Q ss_pred --------c----------CCCCcEEEEecCCCCCcccccccCccCch-------H----HHHHHHHHHHHHHHHHcCCC
Q 008531 355 --------Y----------GTKYSDILRVPFRTEKGVVRKWISRFEVW-------P----YLETYTEDVAVEIAKELQGK 405 (562)
Q Consensus 355 --------~----------~~~gv~I~RVP~~~~~~~~~~~isr~~l~-------p----yLe~fa~~~~~~i~~~~~~~ 405 (562)
. .-+|+.|+-|.... +.+|..++ + ..--|++.+.+.+ ..++.+
T Consensus 62 ~~~~~v~~~~~~~~~v~~~~~~~v~v~~i~~~~-------~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~-~~l~~~ 133 (245)
T PF08323_consen 62 PFGGPVPVGVWYEVRVYRYPVDGVPVYFIDNPE-------YFDRPGIYGDNGGDYPDNAERFAFFSRAALELL-KKLGWK 133 (245)
T ss_dssp STTCEEEEE----EEEEEEEETTEEEEEEESHH-------HHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHH-CTCT-S
T ss_pred ccccccccccceEEEEEEEEcCCccEEEecChh-------hccccceeccCCCcchhHHHHHHHHHHHHHHHH-HhhCCC
Confidence 0 00244444443221 22233333 1 1223455555544 334579
Q ss_pred CCEEEecCcChHHHHHHHHHhc-------CCcEEEEecCCCcCcCCC------Ccchhcc--cCcccccchhHHHHHHHH
Q 008531 406 PDLIIGNYSDGNIVASLLAHKL-------GVTQCTIAHALEKTKYPD------SDIYWKN--LDDKYHFSCQFTADLIAM 470 (562)
Q Consensus 406 PDLIHaHywdsGlVA~lLArkl-------gVP~V~T~HSLe~~Ky~~------s~~~w~~--~e~~y~~s~rf~aE~~am 470 (562)
|||||+|.|.+++++..++... ++|+|+|.|.++...... .+..|.. ....+.+..++-..+.++
T Consensus 134 pDIIH~hDW~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~in~lk~gi 213 (245)
T PF08323_consen 134 PDIIHCHDWHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQINFLKAGI 213 (245)
T ss_dssp -SEEEEECGGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEEEHHHHHH
T ss_pred CCEEEecCchHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccccccCHHHHHH
Confidence 9999999999999999999987 699999999986442211 1222221 111233344555667899
Q ss_pred hhCCEEEecCHHHH
Q 008531 471 NHTDFIITSTFQEI 484 (562)
Q Consensus 471 n~AD~IIaSS~qEi 484 (562)
..||.|+|+|+.-.
T Consensus 214 ~~AD~v~TVS~~Ya 227 (245)
T PF08323_consen 214 VYADKVTTVSPTYA 227 (245)
T ss_dssp HHSSEEEESSHHHH
T ss_pred HhcCEeeeCCHHHH
Confidence 99999999996443
No 25
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.26 E-value=2e-10 Score=120.02 Aligned_cols=171 Identities=15% Similarity=0.178 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchH
Q 008531 306 ILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWP 385 (562)
Q Consensus 306 VldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~p 385 (562)
..++|++|.+ +|| +|+|+|+..... .+ + |++++|++..+... .+.++
T Consensus 13 ~~~la~~L~~--------~G~----~v~~~~~~~~~~------~~-----~--~v~~~~~~~~~~~~--------~~~~~ 59 (396)
T cd03818 13 FRHLAPALAA--------QGH----EVVFLTEPNAAP------PP-----G--GVRVVRYRPPRGPT--------SGTHP 59 (396)
T ss_pred HHHHHHHHHH--------CCC----EEEEEecCCCCC------CC-----C--CeeEEEecCCCCCC--------CCCCc
Confidence 4667777776 899 999999864321 11 1 69999998775410 13344
Q ss_pred HHHHHHHHH------HHHHHH--HcCCCCCEEEecCcChHHHHHHHHHhc-CCcEEEEecCCCcCcCCCCcchhcccCcc
Q 008531 386 YLETYTEDV------AVEIAK--ELQGKPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKNLDDK 456 (562)
Q Consensus 386 yLe~fa~~~------~~~i~~--~~~~~PDLIHaHywdsGlVA~lLArkl-gVP~V~T~HSLe~~Ky~~s~~~w~~~e~~ 456 (562)
|+..|...+ .+.+.. ..+.+||+||+|...+ .+..+++.+ ++|+|.+.|.+........+.. ......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~--~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 136 (396)
T cd03818 60 YLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWG--ETLFLKDVWPDAPLIGYFEFYYRAEGADVGFD-PEFPPS 136 (396)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccc--hhhhHHHhCCCCCEEEEEeeeecCCCCCCCCC-CCCCCc
Confidence 444443222 222211 2356899999997322 344566665 5999988875443322110000 000000
Q ss_pred cccchhHHH----HHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCcc
Q 008531 457 YHFSCQFTA----DLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYF 532 (562)
Q Consensus 457 y~~s~rf~a----E~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~ 532 (562)
.....++.. ....++.||.||++|....+ .+. .. +..|+.|||||||.+.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~-------~~~--------~~---------~~~ki~vI~ngvd~~~f~ 192 (396)
T cd03818 137 LDDALRLRNRNALILLALAQADAGVSPTRWQRS-------TFP--------AE---------LRSRISVIHDGIDTDRLR 192 (396)
T ss_pred hhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHh-------hCc--------Hh---------hccceEEeCCCccccccC
Confidence 000122221 34679999999999987664 121 11 235899999999999998
Q ss_pred CCCh
Q 008531 533 PYTE 536 (562)
Q Consensus 533 P~~~ 536 (562)
|...
T Consensus 193 ~~~~ 196 (396)
T cd03818 193 PDPQ 196 (396)
T ss_pred CCch
Confidence 8654
No 26
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.26 E-value=3.1e-10 Score=113.83 Aligned_cols=177 Identities=12% Similarity=0.116 Sum_probs=108.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+|++.+|++ |..||+..++.+++++|.+ +|| +|+|+|....... ... . .
T Consensus 1 ~i~~i~~~~~~--------~~~gG~~~~~~~la~~L~~--------~g~----~v~v~~~~~~~~~------~~~-~--~ 51 (363)
T cd04955 1 KIAIIGTRGIP--------AKYGGFETFVEELAPRLVA--------RGH----EVTVYCRSPYPKQ------KET-E--Y 51 (363)
T ss_pred CeEEEecCcCC--------cccCcHHHHHHHHHHHHHh--------cCC----CEEEEEccCCCCC------ccc-c--c
Confidence 69999998864 3679999999999999887 899 8999997643321 011 1 1
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
+|++++++|..... .+ ..+ .-.+ ..+.+.+. ...++|+||+..... ..+..++++.|+|+|++.|+
T Consensus 52 ~~i~~~~~~~~~~~-----~~---~~~--~~~~-~~~~~~~~--~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~ 117 (363)
T cd04955 52 NGVRLIHIPAPEIG-----GL---GTI--IYDI-LAILHALF--VKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDG 117 (363)
T ss_pred CCceEEEcCCCCcc-----ch---hhh--HHHH-HHHHHHHh--ccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccC
Confidence 37899998876421 00 000 0001 11122221 123455555544333 44555666779999999998
Q ss_pred CCcCcCCCCcchhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccc-cccccccccccCCceeeeccccc
Q 008531 438 LEKTKYPDSDIYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTV-GQYESHTAFTLPGLYRVVHGIDV 514 (562)
Q Consensus 438 Le~~Ky~~s~~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l-~qyes~~~ft~p~Lyr~v~gi~v 514 (562)
.+..+. .|.. +..++ ..|..+++.||.||+.|....+ .+ ..| |
T Consensus 118 ~~~~~~-----~~~~------~~~~~~~~~~~~~~~~ad~ii~~s~~~~~----~~~~~~----------------~--- 163 (363)
T cd04955 118 LEWKRA-----KWGR------PAKRYLKFGEKLAVKFADRLIADSPGIKE----YLKEKY----------------G--- 163 (363)
T ss_pred cceeec-----cccc------chhHHHHHHHHHHHhhccEEEeCCHHHHH----HHHHhc----------------C---
Confidence 754321 1211 11222 3577889999999999976654 11 222 1
Q ss_pred CCCceEEecCCCccCCccC
Q 008531 515 FDPKFNIVSPGADMSIYFP 533 (562)
Q Consensus 515 ~dpKi~VIPpGVD~e~F~P 533 (562)
.++ .+||||+|...|.+
T Consensus 164 -~~~-~~i~ngv~~~~~~~ 180 (363)
T cd04955 164 -RDS-TYIPYGADHVVSSE 180 (363)
T ss_pred -CCC-eeeCCCcChhhcch
Confidence 123 99999999988765
No 27
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.17 E-value=1.1e-09 Score=107.69 Aligned_cols=204 Identities=17% Similarity=0.184 Sum_probs=120.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+++|.+.. |+.||...++.+++++|.+ +|| +|+++|........... ... .....
T Consensus 1 kIl~i~~~~~---------~~~~G~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~~~~~~-~~~-~~~~~ 57 (394)
T cd03794 1 KILILSQYFP---------PELGGGAFRTTELAEELVK--------RGH----EVTVITGSPNYPSGKIY-KGY-KREEV 57 (394)
T ss_pred CEEEEecccC---------CccCCcceeHHHHHHHHHh--------CCc----eEEEEecCCCccccccc-ccc-eEEec
Confidence 6899986532 2458889999988888887 899 99999875433211100 000 00112
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC--cChHHHHHHHHHhcCCcEEEEe
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY--SDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy--wdsGlVA~lLArklgVP~V~T~ 435 (562)
+++++++++...... ..++. .++.+ ..|.......+.. ...+||+||+|. ...+..+..++++.++|.+.+.
T Consensus 58 ~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (394)
T cd03794 58 DGVRVHRVPLPPYKK--NGLLK--RLLNY-LSFALSALLALLK-RRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEV 131 (394)
T ss_pred CCeEEEEEecCCCCc--cchHH--HHHhh-hHHHHHHHHHHHh-cccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 478899888775421 01100 01111 1223333333321 256899999997 3566778888888899999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|..........+..+... ..+.+. ...+..+++.||.||+.|....+. +..+ +..
T Consensus 132 h~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~vi~~s~~~~~~----~~~~------------------~~~ 186 (394)
T cd03794 132 RDLWPESAVALGLLKNGS-LLYRLL--RKLERLIYRRADAIVVISPGMREY----LVRR------------------GVP 186 (394)
T ss_pred hhhcchhHHHccCccccc-hHHHHH--HHHHHHHHhcCCEEEEECHHHHHH----HHhc------------------CCC
Confidence 976422111000000000 000111 135778899999999999876641 1111 223
Q ss_pred CCceEEecCCCccCCccCCC
Q 008531 516 DPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~ 535 (562)
..++.+||||+|...+.+..
T Consensus 187 ~~~~~~i~~~~~~~~~~~~~ 206 (394)
T cd03794 187 PEKISVIPNGVDLELFKPPP 206 (394)
T ss_pred cCceEEcCCCCCHHHcCCcc
Confidence 45999999999998887654
No 28
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.17 E-value=6.9e-10 Score=114.06 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||+|++- -+||......+++++|.+ +|| +|.|+|.... .. . ...+.
T Consensus 2 ~~i~i~~~-------------g~gG~~~~~~~la~~L~~--------~g~----ev~vv~~~~~-~~---~-~~~~~--- 48 (357)
T PRK00726 2 KKILLAGG-------------GTGGHVFPALALAEELKK--------RGW----EVLYLGTARG-ME---A-RLVPK--- 48 (357)
T ss_pred cEEEEEcC-------------cchHhhhHHHHHHHHHHh--------CCC----EEEEEECCCc-hh---h-hcccc---
Confidence 89988862 247888777777777776 899 9999987431 10 0 11111
Q ss_pred CCCcEEEEecCCCCCcccccccCcc-CchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRF-EVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~-~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
.++++++++.....+. ...++. ..+.++.. ...+.+.+ + +.+||+||+|.|..++.|.++++..++|+|++.
T Consensus 49 -~g~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~~~~~~i-k--~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 121 (357)
T PRK00726 49 -AGIEFHFIPSGGLRRK--GSLANLKAPFKLLKG-VLQARKIL-K--RFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHE 121 (357)
T ss_pred -CCCcEEEEeccCcCCC--ChHHHHHHHHHHHHH-HHHHHHHH-H--hcCCCEEEECCCcchhHHHHHHHHcCCCEEEEc
Confidence 3789999987542100 000000 01112211 12233334 2 358999999998778888888999999999876
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|.. |. . ..++++.+.||.+|+++.+... .++
T Consensus 122 ~~~-----------~~---------~--~~~r~~~~~~d~ii~~~~~~~~---------------------------~~~ 152 (357)
T PRK00726 122 QNA-----------VP---------G--LANKLLARFAKKVATAFPGAFP---------------------------EFF 152 (357)
T ss_pred CCC-----------Cc---------c--HHHHHHHHHhchheECchhhhh---------------------------ccC
Confidence 531 10 0 1246678899999998874321 112
Q ss_pred CCceEEecCCCccCCccCC
Q 008531 516 DPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~ 534 (562)
..|+.|||||||.+.|.+.
T Consensus 153 ~~~i~vi~n~v~~~~~~~~ 171 (357)
T PRK00726 153 KPKAVVTGNPVREEILALA 171 (357)
T ss_pred CCCEEEECCCCChHhhccc
Confidence 3599999999999877653
No 29
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.16 E-value=1.1e-09 Score=108.77 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=102.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||+++++..+ ..+.|..||..+++.+++++|.+ +|| +|.|+|...+...
T Consensus 1 MkI~~i~~~~~-----~~~~~~~GG~~~~~~~l~~~L~~--------~g~----~V~v~~~~~~~~~------------- 50 (335)
T cd03802 1 MRIALVAPPRE-----PVPPPAYGGTERVVAALTEGLVA--------RGH----EVTLFASGDSKTA------------- 50 (335)
T ss_pred CeEEEEcCCcc-----cCCCcccCcHHHHHHHHHHHHHh--------cCc----eEEEEecCCCCcc-------------
Confidence 79999996432 12446789999999999999887 899 9999997543210
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEec
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~H 436 (562)
........... +............+...+.+.+ + ..+||+||+|.+.+... +++..++|+|.|.|
T Consensus 51 ---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~--~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h 115 (335)
T cd03802 51 ---APLVPVVPEPL------RLDAPGRDRAEAEALALAERAL-A--AGDFDIVHNHSLHLPLP---FARPLPVPVVTTLH 115 (335)
T ss_pred ---cceeeccCCCc------ccccchhhHhhHHHHHHHHHHH-h--cCCCCEEEecCcccchh---hhcccCCCEEEEec
Confidence 00011111000 0000001111122233344444 2 46899999999876655 67889999999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
+...... .. -......++.+++.|..... .+. . .
T Consensus 116 ~~~~~~~----------------~~----~~~~~~~~~~~~~~s~~~~~-------~~~-----------------~--~ 149 (335)
T cd03802 116 GPPDPEL----------------LK----LYYAARPDVPFVSISDAQRR-------PWP-----------------P--L 149 (335)
T ss_pred CCCCccc----------------ch----HHHhhCcCCeEEEecHHHHh-------hcc-----------------c--c
Confidence 7543221 00 12346777888888876543 111 1 1
Q ss_pred CceEEecCCCccCCccCC
Q 008531 517 PKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~ 534 (562)
.++.|||||+|.+.|.+.
T Consensus 150 ~~~~vi~ngvd~~~~~~~ 167 (335)
T cd03802 150 PWVATVHNGIDLDDYPFR 167 (335)
T ss_pred cccEEecCCcChhhCCCC
Confidence 589999999999999763
No 30
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.12 E-value=1.2e-09 Score=109.60 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=106.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccc
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKW 377 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~ 377 (562)
+.||..+++.+++++|.+ +|| +|.|+|...+.. ..++ ..++.+++++....+
T Consensus 8 ~~gG~e~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~------~~~~----~~~~~~~~~~~~~~~------ 59 (355)
T cd03819 8 ESGGVERGTLELARALVE--------RGH----RSLVASAGGRLV------AELE----AEGSRHIKLPFISKN------ 59 (355)
T ss_pred ccCcHHHHHHHHHHHHHH--------cCC----EEEEEcCCCchH------HHHH----hcCCeEEEccccccc------
Confidence 459999999988888877 899 999998642211 1222 126777777765431
Q ss_pred cCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCccc
Q 008531 378 ISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKY 457 (562)
Q Consensus 378 isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y 457 (562)
.+..+ .+...+.+.+. +.+||+||+|....+..+.++++..++|+|.+.|+......
T Consensus 60 -----~~~~~-~~~~~l~~~~~---~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------- 116 (355)
T cd03819 60 -----PLRIL-LNVARLRRLIR---EEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNF-------------- 116 (355)
T ss_pred -----hhhhH-HHHHHHHHHHH---HcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHH--------------
Confidence 11111 12233444553 35899999999877888888889999999999997422110
Q ss_pred ccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 458 HFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 458 ~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.....+..||.||+.|....+ .+.++ | +.+..|+.+||||+|.+.|.+..
T Consensus 117 -------~~~~~~~~~~~vi~~s~~~~~----~~~~~-----------~------~~~~~k~~~i~ngi~~~~~~~~~ 166 (355)
T cd03819 117 -------RYNAIMARGDRVIAVSNFIAD----HIREN-----------Y------GVDPDRIRVIPRGVDLDRFDPGA 166 (355)
T ss_pred -------HHHHHHHhcCEEEEeCHHHHH----HHHHh-----------c------CCChhhEEEecCCccccccCccc
Confidence 123457889999998876553 11111 1 22345999999999999887643
No 31
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.10 E-value=2.3e-09 Score=114.10 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=66.8
Q ss_pred CCCCCEEEecCcChHHHHHHHHH--hcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAH--KLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITST 480 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLAr--klgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS 480 (562)
+.+||+||+|++.++.++..+++ .++.|.++|+|+.+........ .+ . ......+++||+||++|
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~~~~~~~~~~t~Hg~d~~~~~~~~--------~~--~---~~~~~~~~~ad~vv~~S 182 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREVLN--------HY--T---PEYQQLFRRGDLMLPIS 182 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHhCCCCCCeEEEEcccccccchhhh--------hh--h---HHHHHHHHhCCEEEECC
Confidence 45899999999988888888877 4566889999986533210000 01 0 12345789999999999
Q ss_pred HHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 481 FQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 481 ~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
....+ .+.++ | +...|+.|||||||.+.|.+.
T Consensus 183 ~~~~~----~l~~~----------------g--~~~~ki~vi~nGvd~~~f~~~ 214 (406)
T PRK15427 183 DLWAG----RLQKM----------------G--CPPEKIAVSRMGVDMTRFSPR 214 (406)
T ss_pred HHHHH----HHHHc----------------C--CCHHHEEEcCCCCCHHHcCCC
Confidence 86554 22222 2 233499999999999998764
No 32
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.06 E-value=1.3e-09 Score=110.29 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=70.6
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHH
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 483 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qE 483 (562)
.+||+||+|+...+..+..+++++|+|+|+|+|+........ +... .........+..+++.||.||+.|...
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~d~ii~~s~~~ 153 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLA----LLLR---SRWALYARRRRRLARRAALFIAVSQFI 153 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccch----hhcc---cchhHHHHHHHHHHHhcCEEEECCHHH
Confidence 589999999888888899999999999999999865432211 0000 000011134667899999999999766
Q ss_pred HhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 484 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 484 i~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
.+ .+.++ ++...|+.|||||+|.+.|.|.
T Consensus 154 ~~----~~~~~------------------~~~~~~i~vi~~g~d~~~~~~~ 182 (367)
T cd05844 154 RD----RLLAL------------------GFPPEKVHVHPIGVDTAKFTPA 182 (367)
T ss_pred HH----HHHHc------------------CCCHHHeEEecCCCCHHhcCCC
Confidence 54 11212 2234589999999999988764
No 33
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.05 E-value=3.1e-09 Score=104.58 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=109.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++... .|+.||...++..++++|.+ +|| +|.|+|...++... .+..
T Consensus 1 kil~~~~~~---------~p~~~G~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~~------~~~~--- 50 (374)
T cd03817 1 KIGIFTDTY---------LPQVNGVATSIRRLAEELEK--------RGH----EVYVVAPSYPGAPE------EEEV--- 50 (374)
T ss_pred CeeEeehhc---------cCCCCCeehHHHHHHHHHHH--------cCC----eEEEEeCCCCCCCc------cccc---
Confidence 688887431 26889999999988888876 799 99999976543210 0000
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~H 436 (562)
.+....+++.... ..+ ...+. +...+.+.+ . ..+||+||+|. +..+..+..++++.++|+|.+.|
T Consensus 51 ~~~~~~~~~~~~~----~~~---~~~~~----~~~~~~~~~-~--~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 116 (374)
T cd03817 51 VVVRPFRVPTFKY----PDF---RLPLP----IPRALIIIL-K--ELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYH 116 (374)
T ss_pred ccccccccccchh----hhh---hcccc----HHHHHHHHH-h--hcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEec
Confidence 1222222211110 000 00111 112222223 2 46899999997 56677888999999999999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhH-HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQF-TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf-~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
..... +........ ........ ..++..++.||.|++.|....+ .+.++ | .
T Consensus 117 ~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~----~~~~~----------------~---~ 168 (374)
T cd03817 117 TMYED-YTHYVPLGR----LLARAVVRRKLSRRFYNRCDAVIAPSEKIAD----LLREY----------------G---V 168 (374)
T ss_pred CCHHH-HHHHHhccc----chhHHHHHHHHHHHHhhhCCEEEeccHHHHH----HHHhc----------------C---C
Confidence 76421 100000000 00001111 3577889999999999986543 22222 1 1
Q ss_pred CCceEEecCCCccCCccCCCh
Q 008531 516 DPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~~ 536 (562)
..++.|||||+|.+.|.+...
T Consensus 169 ~~~~~vi~~~~~~~~~~~~~~ 189 (374)
T cd03817 169 KRPIEVIPTGIDLDRFEPVDG 189 (374)
T ss_pred CCceEEcCCccchhccCccch
Confidence 347999999999998877654
No 34
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.05 E-value=2.6e-09 Score=109.77 Aligned_cols=194 Identities=15% Similarity=0.141 Sum_probs=101.8
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||+++.+.- .+||..+++.++|++|.+ +|| +|+|+|...+.. .+.. |...+
T Consensus 1 mkIl~~~~~~-----------~~gG~e~~~~~la~~L~~--------~G~----~V~v~~~~~~~~---~~~~--~~~~~ 52 (392)
T cd03805 1 LRVAFIHPDL-----------GIGGAERLVVDAALALQS--------RGH----EVTIYTSHHDPS---HCFE--ETKDG 52 (392)
T ss_pred CeEEEECCCC-----------CCchHHHHHHHHHHHHHh--------CCC----eEEEEcCCCCch---hcch--hccCC
Confidence 7999997532 469999999999999987 899 999999643211 1111 11111
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHH--HHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIA--KELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~--~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
++.|..++..... ...++. . .+..+.......+. .....+||+||+|.+..+..+. +...+.|+|++
T Consensus 53 --~~~i~~~~~~~~~----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~--~~~~~~~~i~~ 121 (392)
T cd03805 53 --TLPVRVRGDWLPR----SIFGRF--H-ILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVPLL--KLFSPSKILFY 121 (392)
T ss_pred --eeEEEEEeEEEcc----hhhHhH--H-HHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHHHH--HHhcCCcEEEE
Confidence 2333332211000 001110 0 11111111111110 0124689999999876554433 33334899999
Q ss_pred ecCCCcCcCCCCcchhcccCcccccchhH-HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccc
Q 008531 435 AHALEKTKYPDSDIYWKNLDDKYHFSCQF-TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 513 (562)
Q Consensus 435 ~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf-~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~ 513 (562)
.|..+..-....+ .++.. + ...+ ..|.++++.||.||++|....+ .+.+. |. .
T Consensus 122 ~h~~~~~~~~~~~-~~~~~---~--~~~~~~~e~~~~~~ad~ii~~s~~~~~----~~~~~-----------~~-----~ 175 (392)
T cd03805 122 CHFPDQLLAQRGS-LLKRL---Y--RKPFDWLEEFTTGMADKIVVNSNFTAS----VFKKT-----------FP-----S 175 (392)
T ss_pred EecChHHhcCCCc-HHHHH---H--HHHHHHHHHHHhhCceEEEEcChhHHH----HHHHH-----------hc-----c
Confidence 9954321100011 11000 0 0111 3578899999999998875443 11111 10 0
Q ss_pred cCCCceEEecCCCccCCccCCC
Q 008531 514 VFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 514 v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
....++.|||||+|.+.|.|..
T Consensus 176 ~~~~~~~vi~n~vd~~~~~~~~ 197 (392)
T cd03805 176 LAKNPREVVYPCVDTDSFESTS 197 (392)
T ss_pred cccCCcceeCCCcCHHHcCccc
Confidence 1122456999999999887643
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.04 E-value=6.3e-09 Score=105.68 Aligned_cols=155 Identities=15% Similarity=0.085 Sum_probs=101.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccc
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKW 377 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~ 377 (562)
.+||...++.+++++|.+ +|| +|+|+|...... .+.. ...+++++++|+....+
T Consensus 8 ~~gG~~~~~~~la~~l~~--------~G~----ev~v~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~----- 61 (350)
T cd03785 8 GTGGHIFPALALAEELRE--------RGA----EVLFLGTKRGLE--------ARLV-PKAGIPLHTIPVGGLRR----- 61 (350)
T ss_pred CchhhhhHHHHHHHHHHh--------CCC----EEEEEECCCcch--------hhcc-cccCCceEEEEecCcCC-----
Confidence 578999988888888887 899 999999753211 1111 11368899998864211
Q ss_pred cCccCchHHH------HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhc
Q 008531 378 ISRFEVWPYL------ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWK 451 (562)
Q Consensus 378 isr~~l~pyL------e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~ 451 (562)
...+..+ -.....+.+.+. +.+||+||+|.+..++.|..+++..|+|+|++.|.. |.
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~i~---~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-----------~~ 124 (350)
T cd03785 62 ---KGSLKKLKAPFKLLKGVLQARKILK---KFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-----------VP 124 (350)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHH---hcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC-----------Cc
Confidence 1111111 111123344442 358999999987778888888999999999755431 00
Q ss_pred ccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCc
Q 008531 452 NLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIY 531 (562)
Q Consensus 452 ~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F 531 (562)
. ..++++.+.||.|+++|..+.+ + ....|+.+||||+|.+.|
T Consensus 125 ---------~--~~~~~~~~~~~~vi~~s~~~~~--------~-------------------~~~~~~~~i~n~v~~~~~ 166 (350)
T cd03785 125 ---------G--LANRLLARFADRVALSFPETAK--------Y-------------------FPKDKAVVTGNPVREEIL 166 (350)
T ss_pred ---------c--HHHHHHHHhhCEEEEcchhhhh--------c-------------------CCCCcEEEECCCCchHHh
Confidence 0 1234567789999999887653 1 023589999999999877
Q ss_pred cC
Q 008531 532 FP 533 (562)
Q Consensus 532 ~P 533 (562)
.+
T Consensus 167 ~~ 168 (350)
T cd03785 167 AL 168 (350)
T ss_pred hh
Confidence 65
No 36
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.01 E-value=7e-09 Score=104.09 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=109.7
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+++++.. ..||...++.+++++|++ .|| +|+++|...... ......+ .
T Consensus 1 kIl~~~~~~-----------~~GG~~~~~~~l~~~L~~--------~~~----~v~~i~~~~~~~---~~~~~~~----~ 50 (358)
T cd03812 1 KILHIVGTM-----------NRGGIETFIMNYYRNLDR--------SKI----QFDFLVTSKEEG---DYDDEIE----K 50 (358)
T ss_pred CEEEEeCCC-----------CCccHHHHHHHHHHhcCc--------cce----EEEEEEeCCCCc---chHHHHH----H
Confidence 577876531 689999999999999886 799 999998653221 0111111 1
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcE-EEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQ-CTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~-V~T~H 436 (562)
.++.+++++.... ..+.++ ..+.+.+. ..+||+||+|+...+.++..+++..++|. |.+.|
T Consensus 51 ~~~~~~~~~~~~~-----------~~~~~~----~~~~~~~~---~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 112 (358)
T cd03812 51 LGGKIYYIPARKK-----------NPLKYF----KKLYKLIK---KNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSH 112 (358)
T ss_pred cCCeEEEecCCCc-----------cHHHHH----HHHHHHHh---cCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEec
Confidence 2677777654432 222222 23333332 35899999999767777777788889886 56677
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
........... .......+..+++.||.++++|....+. + ++ ....
T Consensus 113 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~s~~~~~~-------~-----------~~-----~~~~ 158 (358)
T cd03812 113 NTSDSHDKKKK-----------ILKYKVLRKLINRLATDYLACSEEAGKW-------L-----------FG-----KVKN 158 (358)
T ss_pred cccccccccch-----------hhHHHHHHHHHHhcCCEEEEcCHHHHHH-------H-----------Hh-----CCCc
Confidence 65433211000 0000123566789999999998876541 1 10 0123
Q ss_pred CceEEecCCCccCCccCCC
Q 008531 517 PKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~ 535 (562)
.|+.|||||||.+.|.+..
T Consensus 159 ~~~~vi~ngvd~~~~~~~~ 177 (358)
T cd03812 159 KKFKVIPNGIDLEKFIFNE 177 (358)
T ss_pred ccEEEEeccCcHHHcCCCc
Confidence 5999999999999887653
No 37
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=99.01 E-value=1.1e-08 Score=91.35 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCc
Q 008531 304 VYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEV 383 (562)
Q Consensus 304 vYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l 383 (562)
.++.+++++|.+ +|+ +|+|+|...+.. ..+. .+++.+++++.... ..
T Consensus 11 ~~~~~~~~~L~~--------~g~----~V~ii~~~~~~~-------~~~~---~~~i~~~~~~~~~k-----------~~ 57 (139)
T PF13477_consen 11 TFIYNLAKELKK--------RGY----DVHIITPRNDYE-------KYEI---IEGIKVIRLPSPRK-----------SP 57 (139)
T ss_pred HHHHHHHHHHHH--------CCC----EEEEEEcCCCch-------hhhH---hCCeEEEEecCCCC-----------cc
Confidence 477777777776 899 999999843211 1111 24799999975532 14
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCEEEecCcC-hHHHHHHHHHhcC-CcEEEEecCCCcCcCCCCcchhcccCcccccch
Q 008531 384 WPYLETYTEDVAVEIAKELQGKPDLIIGNYSD-GNIVASLLAHKLG-VTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSC 461 (562)
Q Consensus 384 ~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywd-sGlVA~lLArklg-VP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~ 461 (562)
++++. +. .+.+.+. +.+||+||+|... .+++|.++++..| +|+|.|.|+++.... +. +..+.
T Consensus 58 ~~~~~-~~-~l~k~ik---~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~~--~~--------~~~~~- 121 (139)
T PF13477_consen 58 LNYIK-YF-RLRKIIK---KEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYNS--SK--------KKKLK- 121 (139)
T ss_pred HHHHH-HH-HHHHHhc---cCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeecC--Cc--------hHHHH-
Confidence 55553 32 5666663 3589999999965 4899999999999 999999999765321 10 00011
Q ss_pred hHHHHHHHHhhCCEEEecC
Q 008531 462 QFTADLIAMNHTDFIITST 480 (562)
Q Consensus 462 rf~aE~~amn~AD~IIaSS 480 (562)
+ ..++++++.||.||+.|
T Consensus 122 ~-~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 122 K-FIIKFAFKRADKIIVQS 139 (139)
T ss_pred H-HHHHHHHHhCCEEEEcC
Confidence 1 24678999999999864
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.97 E-value=2.1e-08 Score=106.77 Aligned_cols=189 Identities=12% Similarity=0.027 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
.||+|+|. + + +|....+.+++++|++ +|| +|+|+|...++. ..+ ...
T Consensus 4 ~~~~~~~~-~-----------~-~~~~~R~~~~a~~L~~--------~G~----~V~ii~~~~~~~-------~~~-~~~ 50 (415)
T cd03816 4 KRVCVLVL-G-----------D-IGRSPRMQYHALSLAK--------HGW----KVDLVGYLETPP-------HDE-ILS 50 (415)
T ss_pred cEEEEEEe-c-----------c-cCCCHHHHHHHHHHHh--------cCc----eEEEEEecCCCC-------CHH-Hhc
Confidence 57888874 1 2 3333577878888887 899 999999754321 111 111
Q ss_pred CCCcEEEEecCCC-CCcccccccCccCchHHHHHHH---HHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCC
Q 008531 357 TKYSDILRVPFRT-EKGVVRKWISRFEVWPYLETYT---EDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGV 429 (562)
Q Consensus 357 ~~gv~I~RVP~~~-~~~~~~~~isr~~l~pyLe~fa---~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgV 429 (562)
..++.+++++..+ ..+... .+..|..... ..+...+.. ..+||+||+|.. .+..+|.++++..++
T Consensus 51 ~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~--~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~ 122 (415)
T cd03816 51 NPNITIHPLPPPPQRLNKLP------FLLFAPLKVLWQFFSLLWLLYK--LRPADYILIQNPPSIPTLLIAWLYCLLRRT 122 (415)
T ss_pred CCCEEEEECCCCccccccch------HHHHHHHHHHHHHHHHHHHHHh--cCCCCEEEEeCCCCchHHHHHHHHHHHhCC
Confidence 2378888887765 110100 1112222111 122222322 357999999863 345567778888999
Q ss_pred cEEEEecCCCcCcCCCCcchhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCcee
Q 008531 430 TQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYR 507 (562)
Q Consensus 430 P~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr 507 (562)
|+|+|.|.....-.. .+ .+. .....++ ..|.++.+.||.||++|....+ .+.++
T Consensus 123 ~~V~~~h~~~~~~~~-~~-~~~-----~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~----~l~~~------------- 178 (415)
T cd03816 123 KLIIDWHNYGYTILA-LK-LGE-----NHPLVRLAKWYEKLFGRLADYNLCVTKAMKE----DLQQF------------- 178 (415)
T ss_pred eEEEEcCCchHHHHh-cc-cCC-----CCHHHHHHHHHHHHHhhcCCEeeecCHHHHH----HHHhh-------------
Confidence 999999975321100 00 000 0011112 3588889999999999987654 22222
Q ss_pred eecccccCCCceEEecCCCccCCccCCCh
Q 008531 508 VVHGIDVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 508 ~v~gi~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
+.+..|+.||||| |.+.|.|...
T Consensus 179 -----~~~~~ki~vI~Ng-~~~~f~p~~~ 201 (415)
T cd03816 179 -----NNWKIRATVLYDR-PPEQFRPLPL 201 (415)
T ss_pred -----hccCCCeeecCCC-CHHHceeCcH
Confidence 2234699999999 4567888654
No 39
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.97 E-value=1.3e-08 Score=100.68 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=107.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++... .|+.||...++.+++++|.+ +|| +|.++|....... ... .
T Consensus 1 kIl~i~~~~---------~p~~~G~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~~------~~~-~--- 49 (364)
T cd03814 1 RIAIVTDTF---------LPQVNGVVRTLQRLVEHLRA--------RGH----EVLVIAPGPFRES------EGP-A--- 49 (364)
T ss_pred CeEEEeccc---------CccccceehHHHHHHHHHHH--------CCC----EEEEEeCCchhhc------cCC-C---
Confidence 688888543 24568999999988888876 899 9999997543211 000 0
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~H 436 (562)
....+.+++...... + +..+. ....+.+.+ + ..+||+||+|.. ..+.++..++++.++|++.++|
T Consensus 50 ~~~~~~~~~~~~~~~-----~-~~~~~-----~~~~~~~~~-~--~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 115 (364)
T cd03814 50 RVVPVPSVPLPGYPE-----I-RLALP-----PRRRVRRLL-D--AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYH 115 (364)
T ss_pred CceeecccccCcccc-----e-Eeccc-----chhhHHHHH-H--hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEe
Confidence 122232222221100 0 01111 011233333 1 358999999964 4567788889999999999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeeccccc
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDV 514 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v 514 (562)
..... +... .. .....++ ..++.+.+.||.|+++|....+ .+.. .
T Consensus 116 ~~~~~-~~~~--~~------~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-------~~~~-----------------~ 162 (364)
T cd03814 116 TDFPE-YLRY--YG------LGPLSWLAWAYLRWFHNRADRVLVPSPSLAD-------ELRA-----------------R 162 (364)
T ss_pred cChHH-Hhhh--cc------cchHhHhhHHHHHHHHHhCCEEEeCCHHHHH-------HHhc-----------------c
Confidence 75321 1000 00 0011111 2456788999999999987653 1111 1
Q ss_pred CCCceEEecCCCccCCccCCC
Q 008531 515 FDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 515 ~dpKi~VIPpGVD~e~F~P~~ 535 (562)
...++.++|+|+|.+.|.|..
T Consensus 163 ~~~~~~~~~~g~~~~~~~~~~ 183 (364)
T cd03814 163 GFRRVRLWPRGVDTELFHPRR 183 (364)
T ss_pred CCCceeecCCCccccccCccc
Confidence 135899999999999887754
No 40
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.94 E-value=1.3e-08 Score=107.04 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=112.1
Q ss_pred ccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceee
Q 008531 275 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV 354 (562)
Q Consensus 275 m~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i 354 (562)
|+-||+++.-.-++- +++ ..||..+||.++++.|.. +|+|+|...++- +..|..
T Consensus 1 ~~~~~~~~~~~~~~~-p~~----~~g~ve~~~~~~~~~l~~---------------~~~~~~~~~~~~------~~~~~~ 54 (380)
T PRK15484 1 MIDKIIFTVTPIFSI-PPR----GAAAVETWIYQVAKRTSI---------------PNRIACIKNPGY------PEYTKV 54 (380)
T ss_pred CCceEEEEeccCCCC-CCc----cccHHHHHHHHhhhhccC---------------CeeEEEecCCCC------Cchhhc
Confidence 677899887544322 222 479999999999988854 799999987652 112222
Q ss_pred cCCCCcEEEEecCCCCCc-ccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEE
Q 008531 355 YGTKYSDILRVPFRTEKG-VVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 433 (562)
Q Consensus 355 ~~~~gv~I~RVP~~~~~~-~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~ 433 (562)
. +|+.|++|++....+ ...+|.+- +-++|. ..+.+.+......++|+||.|... .+.+.+.++..++|+|.
T Consensus 55 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~vi~v~~~~-~~~~~~~~~~~~~~~v~ 126 (380)
T PRK15484 55 N--DNCDIHYIGFSRIYKRLFQKWTRL-DPLPYS----QRILNIAHKFTITKDSVIVIHNSM-KLYRQIRERAPQAKLVM 126 (380)
T ss_pred c--CCCceEEEEeccccchhhhhhhcc-CchhHH----HHHHHHHHhcCCCCCcEEEEeCcH-HhHHHHHhhCCCCCEEE
Confidence 2 378999997764311 11233322 223333 344444433223579999999754 44555556667899999
Q ss_pred EecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccc
Q 008531 434 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 513 (562)
Q Consensus 434 T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~ 513 (562)
+.|.. |. ...++.++.||++|....+ .+...
T Consensus 127 ~~h~~-----------~~---------------~~~~~~~~~ii~~S~~~~~-------~~~~~---------------- 157 (380)
T PRK15484 127 HMHNA-----------FE---------------PELLDKNAKIIVPSQFLKK-------FYEER---------------- 157 (380)
T ss_pred EEecc-----------cC---------------hhHhccCCEEEEcCHHHHH-------HHHhh----------------
Confidence 99952 10 1124568999999876553 12210
Q ss_pred cCCCceEEecCCCccCCccCCCh
Q 008531 514 VFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 514 v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
.+..++.|||||+|.+.|.|...
T Consensus 158 ~~~~~i~vIpngvd~~~~~~~~~ 180 (380)
T PRK15484 158 LPNADISIVPNGFCLETYQSNPQ 180 (380)
T ss_pred CCCCCEEEecCCCCHHHcCCcch
Confidence 12458999999999998887543
No 41
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.94 E-value=1.6e-08 Score=103.94 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=105.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+.|..+. +.||...++.+++++|.+ .|+ ++.|++....+. ...... .
T Consensus 3 ~il~ii~~~-----------~~GG~e~~~~~l~~~l~~--------~~~----~~~v~~~~~~~~----~~~~~~----~ 51 (374)
T TIGR03088 3 LIVHVVYRF-----------DVGGLENGLVNLINHLPA--------DRY----RHAVVALTEVSA----FRKRIQ----R 51 (374)
T ss_pred eEEEEeCCC-----------CCCcHHHHHHHHHhhccc--------ccc----ceEEEEcCCCCh----hHHHHH----h
Confidence 677776543 579999999999998876 688 777777422111 111111 1
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcE-EEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQ-CTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~-V~T~H 436 (562)
.|+.+++++..+. .. +.+ ...+.+.+.+ .+||+||+|.. ....+..+++..++|. ++|.|
T Consensus 52 ~~i~~~~~~~~~~----------~~-~~~----~~~l~~~l~~---~~~Divh~~~~-~~~~~~~~~~~~~~~~~i~~~h 112 (374)
T TIGR03088 52 PDVAFYALHKQPG----------KD-VAV----YPQLYRLLRQ---LRPDIVHTRNL-AALEAQLPAALAGVPARIHGEH 112 (374)
T ss_pred cCceEEEeCCCCC----------CC-hHH----HHHHHHHHHH---hCCCEEEEcch-hHHHHHHHHHhcCCCeEEEeec
Confidence 2688888865432 11 111 2235555533 58999999964 3345566777788885 67777
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
+....... +..|. +. ..++...+.+|.+|+.|....+ .+.+. + ++..
T Consensus 113 ~~~~~~~~--~~~~~-----~~-----~~~~~~~~~~~~~i~vs~~~~~----~~~~~-----------~------~~~~ 159 (374)
T TIGR03088 113 GRDVFDLD--GSNWK-----YR-----WLRRLYRPLIHHYVAVSRDLED----WLRGP-----------V------KVPP 159 (374)
T ss_pred Ccccccch--hhHHH-----HH-----HHHHHHHhcCCeEEEeCHHHHH----HHHHh-----------c------CCCh
Confidence 65322111 11111 11 1234456779999999986553 11111 1 2234
Q ss_pred CceEEecCCCccCCccCCC
Q 008531 517 PKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~ 535 (562)
.|+.|||||||.+.|.|..
T Consensus 160 ~~~~vi~ngvd~~~~~~~~ 178 (374)
T TIGR03088 160 AKIHQIYNGVDTERFHPSR 178 (374)
T ss_pred hhEEEeccCccccccCCCc
Confidence 5899999999999887753
No 42
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.90 E-value=4.3e-08 Score=97.94 Aligned_cols=177 Identities=16% Similarity=0.132 Sum_probs=104.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+++++.. .|+.||...++.+++++|.+ +|| +|.|+|....... ..+..
T Consensus 1 kil~i~~~~---------~p~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~------~~~~~--- 50 (357)
T cd03795 1 RVLHVGKFY---------PPDRGGIEQVIRDLAEGLAA--------RGI----EVAVLCASPEPKG------RDEER--- 50 (357)
T ss_pred CeeEecCCC---------CCCCCcHHHHHHHHHHHHHh--------CCC----ceEEEecCCCCcc------hhhhc---
Confidence 688888542 24689999999988888877 899 8999987543221 11111
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~H 436 (562)
.+..+++++..... .+ +++... +...+. ....+||+||.|+. ..+..... ....++|.+.+.|
T Consensus 51 ~~~~~~~~~~~~~~----~~------~~~~~~----~~~~~~-~~~~~~Dii~~~~~~~~~~~~~~-~~~~~~~~i~~~h 114 (357)
T cd03795 51 NGHRVIRAPSLLNV----AS------TPFSPS----FFKQLK-KLAKKADVIHLHFPNPLADLALL-LLPRKKPVVVHWH 114 (357)
T ss_pred cCceEEEeeccccc----cc------ccccHH----HHHHHH-hcCCCCCEEEEecCcchHHHHHH-HhccCceEEEEEc
Confidence 25567777654320 01 111111 111110 12568999999984 33333333 3337899999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
+...... .. +.... ..+.++++.||.||++|..... .+... ..+.
T Consensus 115 ~~~~~~~----~~-------~~~~~--~~~~~~~~~~d~vi~~s~~~~~----~~~~~------------------~~~~ 159 (357)
T cd03795 115 SDIVKQK----LL-------LKLYR--PLQRRFLRRADAIVATSPNYAE----TSPVL------------------RRFR 159 (357)
T ss_pred Chhhccc----hh-------hhhhh--HHHHHHHHhcCEEEeCcHHHHH----HHHHh------------------cCCc
Confidence 7432210 00 00111 2356789999999999876543 11111 1123
Q ss_pred CceEEecCCCccCCccCCC
Q 008531 517 PKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~ 535 (562)
.++.+||||+|.+.|.+..
T Consensus 160 ~~~~~i~~gi~~~~~~~~~ 178 (357)
T cd03795 160 DKVRVIPLGLDPARYPRPD 178 (357)
T ss_pred cceEEecCCCChhhcCCcc
Confidence 5899999999999887643
No 43
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.90 E-value=6.5e-08 Score=95.04 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=106.0
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++++-. |..||...++.+++++|.+ +|| +|.|+|....... ......
T Consensus 1 kIl~i~~~~~---------~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~------~~~~~~-- 51 (375)
T cd03821 1 KILHVIPSFD---------PKYGGPVRVVLNLSKALAK--------LGH----EVTVATTDAGGDP------LLVALN-- 51 (375)
T ss_pred CeEEEcCCCC---------cccCCeehHHHHHHHHHHh--------cCC----cEEEEecCCCCcc------chhhcc--
Confidence 6888886431 5789999999988888876 899 8999986543221 100000
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-c-ChHHHHHHHHHhcCCcEEEEe
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-S-DGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-w-dsGlVA~lLArklgVP~V~T~ 435 (562)
+..... +..... ....+. + ..+.......+ .....+||+||+|. | ..+..+..++++.++|+|.+.
T Consensus 52 -~~~~~~-~~~~~~-~~~~~~-----~---~~~~~~~~~~~-~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 119 (375)
T cd03821 52 -GVPVKL-FSINVA-YGLNLA-----R---YLFPPSLLAWL-RLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSP 119 (375)
T ss_pred -Cceeee-cccchh-hhhhhh-----h---hccChhHHHHH-HHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEc
Confidence 110100 000000 000000 0 00111111112 11245899999997 4 455677778888999999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|+......... ..+. .....+..+..+++.+|.|++++.++... ... ..+
T Consensus 120 ~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-------~~~----------------~~~ 169 (375)
T cd03821 120 HGMLDPWALPH-KALK------KRLAWFLFERRLLQAAAAVHATSEQEAAE-------IRR----------------LGL 169 (375)
T ss_pred ccccccccccc-chhh------hHHHHHHHHHHHHhcCCEEEECCHHHHHH-------HHh----------------hCC
Confidence 97643211000 0010 01122235677899999999998665541 110 113
Q ss_pred CCceEEecCCCccCCccCCC
Q 008531 516 DPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~ 535 (562)
..|+.|||||+|.+.|.+..
T Consensus 170 ~~~~~vi~~~~~~~~~~~~~ 189 (375)
T cd03821 170 KAPIAVIPNGVDIPPFAALP 189 (375)
T ss_pred cccEEEcCCCcChhccCcch
Confidence 45999999999999887643
No 44
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.89 E-value=1.2e-07 Score=92.46 Aligned_cols=177 Identities=15% Similarity=0.131 Sum_probs=105.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWI 378 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~i 378 (562)
.||...++.+++.+|.+ +|| +|+|+|........ ..... .......+.... ...+.
T Consensus 13 ~~g~~~~~~~~~~~l~~--------~g~----~v~v~~~~~~~~~~------~~~~~---~~~~~~~~~~~~---~~~~~ 68 (377)
T cd03798 13 NGGGGIFVKELARALAK--------RGV----EVTVLAPGPWGPKL------LDLLK---GRLVGVERLPVL---LPVVP 68 (377)
T ss_pred CchHHHHHHHHHHHHHH--------CCC----ceEEEecCCCCCCc------hhhcc---cccccccccccC---cchhh
Confidence 68888999988888876 899 89999875433210 00000 000000000000 00000
Q ss_pred CccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCccc
Q 008531 379 SRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKY 457 (562)
Q Consensus 379 sr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y 457 (562)
. .....+...+...+.+.+.. ...+||+||+|+ +..++++..+++..++|++.+.|.........
T Consensus 69 ~-~~~~~~~~~~~~~~~~~l~~-~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------------ 134 (377)
T cd03798 69 L-LKGPLLYLLAARALLKLLKL-KRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPR------------ 134 (377)
T ss_pred c-cccchhHHHHHHHHHHHHhc-ccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCc------------
Confidence 0 01111223344445555531 246899999998 57788899999999999999999865433211
Q ss_pred ccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCCh
Q 008531 458 HFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 458 ~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
.......+..+++.||.||+.|....+ .+.++ ..+..++.|||+|+|.+.|.+...
T Consensus 135 -~~~~~~~~~~~~~~~d~ii~~s~~~~~----~~~~~------------------~~~~~~~~~i~~~~~~~~~~~~~~ 190 (377)
T cd03798 135 -KRLLRALLRRALRRADAVIAVSEALAD----ELKAL------------------GIDPEKVTVIPNGVDTERFSPADR 190 (377)
T ss_pred -hhhHHHHHHHHHhcCCeEEeCCHHHHH----HHHHh------------------cCCCCceEEcCCCcCcccCCCcch
Confidence 001123466789999999999987664 11111 123569999999999998887653
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.88 E-value=6.2e-08 Score=96.70 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCH
Q 008531 403 QGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481 (562)
Q Consensus 403 ~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~ 481 (562)
..+||+||+|++ .+..++...++..++|++.|.|+...... . .. ..+...++.||.||++|.
T Consensus 77 ~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~---~~~~~~~~~~~~vi~~s~ 139 (355)
T cd03799 77 RLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRS-------------P-DA---IDLDEKLARADFVVAISE 139 (355)
T ss_pred hcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEeccccccc-------------C-ch---HHHHHHHhhCCEEEECCH
Confidence 358999999986 56666777777778999999997432211 0 00 245678999999999998
Q ss_pred HHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 482 QEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 482 qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
...+ .+.++ + | ....++.|||||+|.+.|.+.
T Consensus 140 ~~~~----~l~~~-----------~----~--~~~~~~~vi~~~~d~~~~~~~ 171 (355)
T cd03799 140 YNRQ----QLIRL-----------L----G--CDPDKIHVVHCGVDLERFPPR 171 (355)
T ss_pred HHHH----HHHHh-----------c----C--CCcccEEEEeCCcCHHHcCCc
Confidence 7664 11111 1 1 234599999999999888765
No 46
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.88 E-value=2.5e-08 Score=99.87 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=94.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||++++... -.||...++.+++++|.+ +|| +|.|++...
T Consensus 1 MkIl~~~~~~-----------~~gG~~~~~~~l~~~l~~--------~G~----~v~v~~~~~----------------- 40 (365)
T cd03825 1 MKVLHLNTSD-----------ISGGAARAAYRLHRALQA--------AGV----DSTMLVQEK----------------- 40 (365)
T ss_pred CeEEEEecCC-----------CCCcHHHHHHHHHHHHHh--------cCC----ceeEEEeec-----------------
Confidence 7999997431 458999999988888877 899 899997421
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc--CCcEEEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL--GVTQCTI 434 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl--gVP~V~T 434 (562)
. . +.+.+ . ..+||+||.|++..+.++..+..++ ++|.|+|
T Consensus 41 ---~---------~-----------------------~~~~~-~--~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~ 82 (365)
T cd03825 41 ---K---------A-----------------------LISKI-E--IINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWT 82 (365)
T ss_pred ---c---------h-----------------------hhhCh-h--cccCCEEEEEccccCccCHHHHHHHHcCCCEEEE
Confidence 0 0 11112 1 3589999999877666666666666 9999999
Q ss_pred ecCCCcCc----CCCC-cchhccc-----Cccc---ccchhHH-HHHHHH-hhCCEEEecCHHHHhcccccccccccccc
Q 008531 435 AHALEKTK----YPDS-DIYWKNL-----DDKY---HFSCQFT-ADLIAM-NHTDFIITSTFQEIAGSKDTVGQYESHTA 499 (562)
Q Consensus 435 ~HSLe~~K----y~~s-~~~w~~~-----e~~y---~~s~rf~-aE~~am-n~AD~IIaSS~qEi~~~~~~l~qyes~~~ 499 (562)
.|...... +... ..++... ...+ ....++. .....+ ..++.+|++|....+ .+.++.
T Consensus 83 ~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~----~~~~~~---- 154 (365)
T cd03825 83 LHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLAD----CARSSS---- 154 (365)
T ss_pred cccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHH----HHHhcc----
Confidence 99753110 0000 0000000 0000 0112221 111222 456777887754332 222221
Q ss_pred cccCCceeeecccccCCCceEEecCCCccCCccCCChh
Q 008531 500 FTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEE 537 (562)
Q Consensus 500 ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~~ 537 (562)
.+...|+.|||||+|.+.|.|....
T Consensus 155 -------------~~~~~~~~vi~ngi~~~~~~~~~~~ 179 (365)
T cd03825 155 -------------LFKGIPIEVIPNGIDTTIFRPRDKR 179 (365)
T ss_pred -------------ccCCCceEEeCCCCcccccCCCcHH
Confidence 1234599999999999999876543
No 47
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.88 E-value=1.1e-07 Score=91.92 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=109.3
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++.... |..||...++..++++|.+ .|| +|.+++....... ......
T Consensus 1 kI~ii~~~~~---------~~~~G~~~~~~~l~~~L~~--------~g~----~v~i~~~~~~~~~------~~~~~~-- 51 (374)
T cd03801 1 KILLVTPEYP---------PSVGGAERHVLELARALAA--------RGH----EVTVLTPGDGGLP------DEEEVG-- 51 (374)
T ss_pred CeeEEecccC---------CccCcHhHHHHHHHHHHHh--------cCc----eEEEEecCCCCCC------ceeeec--
Confidence 6888886532 2368999999988888876 799 9999998654321 101000
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
...+....... ..........+...+.+.+ . ..+||+||+|++.....+..+++..++|++++.|.
T Consensus 52 -~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~--~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 52 -GIVVVRPPPLL----------RVRRLLLLLLLALRLRRLL-R--RERFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred -CcceecCCccc----------ccchhHHHHHHHHHHHHHh-h--hcCCcEEEEechhHHHHHHHHHHhcCCcEEEEecc
Confidence 11111110000 0011111122223333334 2 35899999999876666668889999999999998
Q ss_pred CCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCC
Q 008531 438 LEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDP 517 (562)
Q Consensus 438 Le~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dp 517 (562)
.......... . .........+...++.+|.+|+.|....+ .+.++ | .....
T Consensus 118 ~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~d~~i~~s~~~~~----~~~~~-----------~------~~~~~ 168 (374)
T cd03801 118 LEFGRPGNEL-G-------LLLKLARALERRALRRADRIIAVSEATRE----ELREL-----------G------GVPPE 168 (374)
T ss_pred chhhccccch-h-------HHHHHHHHHHHHHHHhCCEEEEecHHHHH----HHHhc-----------C------CCCCC
Confidence 6543221100 0 00011123567889999999999976654 11111 1 11124
Q ss_pred ceEEecCCCccCCccCC
Q 008531 518 KFNIVSPGADMSIYFPY 534 (562)
Q Consensus 518 Ki~VIPpGVD~e~F~P~ 534 (562)
++.+||||+|...|.+.
T Consensus 169 ~~~~i~~~~~~~~~~~~ 185 (374)
T cd03801 169 KITVIPNGVDTERFRPA 185 (374)
T ss_pred cEEEecCcccccccCcc
Confidence 89999999999988643
No 48
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.87 E-value=6e-08 Score=98.52 Aligned_cols=135 Identities=17% Similarity=0.115 Sum_probs=78.9
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWI 378 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~i 378 (562)
+||.+....+++++|.+ +|| +|+|+|+..... ... . ...++++++++.....+ .
T Consensus 10 ~~g~~~~~~~La~~L~~--------~g~----eV~vv~~~~~~~------~~~--~-~~~g~~~~~i~~~~~~~-----~ 63 (348)
T TIGR01133 10 TGGHIFPALAVAEELIK--------RGV----EVLWLGTKRGLE------KRL--V-PKAGIEFYFIPVGGLRR-----K 63 (348)
T ss_pred cHHHHhHHHHHHHHHHh--------CCC----EEEEEeCCCcch------hcc--c-ccCCCceEEEeccCcCC-----C
Confidence 34444333466666665 899 999998632111 011 1 11378999998764210 0
Q ss_pred CccCchHHH---HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCc
Q 008531 379 SRFEVWPYL---ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDD 455 (562)
Q Consensus 379 sr~~l~pyL---e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~ 455 (562)
+....+... -.....+.+.+. +.+||+||+|.+..+..|.++++..++|+|+..|.. +
T Consensus 64 ~~~~~l~~~~~~~~~~~~l~~~i~---~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~-----------~----- 124 (348)
T TIGR01133 64 GSFRLIKTPLKLLKAVFQARRILK---KFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA-----------V----- 124 (348)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH---hcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC-----------C-----
Confidence 011111111 112223444442 368999999987777788888999999998433210 0
Q ss_pred ccccchhHHHHHHHHhhCCEEEecCHHHH
Q 008531 456 KYHFSCQFTADLIAMNHTDFIITSTFQEI 484 (562)
Q Consensus 456 ~y~~s~rf~aE~~amn~AD~IIaSS~qEi 484 (562)
... .++++.+.||.||+.+..+.
T Consensus 125 ----~~~--~~~~~~~~~d~ii~~~~~~~ 147 (348)
T TIGR01133 125 ----PGL--TNKLLSRFAKKVLISFPGAK 147 (348)
T ss_pred ----ccH--HHHHHHHHhCeeEECchhHh
Confidence 011 25677889999999988665
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.86 E-value=7.2e-08 Score=94.94 Aligned_cols=182 Identities=13% Similarity=0.051 Sum_probs=99.2
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+++|+.... ...||...++.+++++|.+ +|| +|.|++........ . .. .
T Consensus 1 kIl~i~~~~~~--------~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~~-~--~~---~--- 51 (359)
T cd03823 1 RILVVNHLYPP--------RSVGGAEVVAHDLAEALAK--------RGH----EVAVLTAGEDPPRQ-D--KE---V--- 51 (359)
T ss_pred CeeEEcccCCc--------ccccchHHHHHHHHHHHHh--------cCC----ceEEEeCCCCCCCc-c--cc---c---
Confidence 68999865321 2479999999999999886 899 89999865432210 0 00 0
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHH-HHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEe
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYL-ETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyL-e~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~ 435 (562)
.+..+...+..... .............+. ..+...+.+.+ + ..+||+||+|.+ ..+.....++++.++|+|++.
T Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 52 IGVVVYGRPIDEVL-RSALPRDLFHLSDYDNPAVVAEFARLL-E--DFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred ccceeecccccccc-CCCchhhhhHHHhccCHHHHHHHHHHH-H--HcCCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 12222222110000 000000000111111 12223333333 2 358999999985 334445567788899999999
Q ss_pred cCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccC
Q 008531 436 HALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVF 515 (562)
Q Consensus 436 HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~ 515 (562)
|........ . .......|.||++|....+ .+.++ +..
T Consensus 128 hd~~~~~~~----------------~-----~~~~~~~d~ii~~s~~~~~----~~~~~------------------~~~ 164 (359)
T cd03823 128 HDYWLICPR----------------Q-----GLFKKGGDAVIAPSRFLLD----RYVAN------------------GLF 164 (359)
T ss_pred eeeeeecch----------------h-----hhhccCCCEEEEeCHHHHH----HHHHc------------------CCC
Confidence 953211100 0 0112233999999876553 12222 112
Q ss_pred CCceEEecCCCccCCccCCC
Q 008531 516 DPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 516 dpKi~VIPpGVD~e~F~P~~ 535 (562)
..++.|||||+|...+.+..
T Consensus 165 ~~~~~vi~n~~~~~~~~~~~ 184 (359)
T cd03823 165 AEKISVIRNGIDLDRAKRPR 184 (359)
T ss_pred ccceEEecCCcChhhccccc
Confidence 35999999999998887643
No 50
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.85 E-value=3.9e-08 Score=107.64 Aligned_cols=132 Identities=16% Similarity=0.075 Sum_probs=82.2
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCC-CCCCCeEEEEecCCCCCCCCc-c------
Q 008531 276 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQG-LDITPQILIITRLLPDAVGTT-C------ 347 (562)
Q Consensus 276 ~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~G-h~~~~~V~V~TR~~~~~~gt~-~------ 347 (562)
.|||+|++--. .|.++|.++.++-++..|++ +| | +|.|+.++.+...... +
T Consensus 4 ~mrIaivTdt~---------lP~vnGva~s~~~~a~~L~~--------~G~h----eV~vvaP~~~~~~~~~~~~~~~~f 62 (462)
T PLN02846 4 KQHIAIFTTAS---------LPWMTGTAVNPLFRAAYLAK--------DGDR----EVTLVIPWLSLKDQKLVYPNKITF 62 (462)
T ss_pred CCEEEEEEcCC---------CCCCCCeeccHHHHHHHHHh--------cCCc----EEEEEecCCccccccccccccccc
Confidence 48999999543 47999999999977776665 89 9 9999998765321000 0
Q ss_pred ccc---ceeecCCCCcEEEEecCCCCCcccccccCc--cCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-cChHHH--
Q 008531 348 GQR---LEKVYGTKYSDILRVPFRTEKGVVRKWISR--FEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-SDGNIV-- 419 (562)
Q Consensus 348 ~q~---~E~i~~~~gv~I~RVP~~~~~~~~~~~isr--~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlV-- 419 (562)
+.+ .+.+..-.+-+|.|+|..+...+.. .++. --++| ..++.+.|.+ .+|||||.|. ...|..
T Consensus 63 ~~~~~~e~~~~~~~~~~v~r~~s~~~p~yp~-r~~~~~r~~~~-----~~~i~~~l~~---~~pDVIHv~tP~~LG~~~~ 133 (462)
T PLN02846 63 SSPSEQEAYVRQWLEERISFLPKFSIKFYPG-KFSTDKRSILP-----VGDISETIPD---EEADIAVLEEPEHLTWYHH 133 (462)
T ss_pred cCchhhhhhhhhhccCeEEEecccccccCcc-cccccccccCC-----hHHHHHHHHh---cCCCEEEEcCchhhhhHHH
Confidence 000 0001111135778888776532211 1110 01111 2356666633 5899999997 566665
Q ss_pred HHHHHHhcCCcEEEEecCC
Q 008531 420 ASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 420 A~lLArklgVP~V~T~HSL 438 (562)
|..+++++++ +|.|+|+-
T Consensus 134 g~~~~~k~~~-vV~tyHT~ 151 (462)
T PLN02846 134 GKRWKTKFRL-VIGIVHTN 151 (462)
T ss_pred HHHHHhcCCc-EEEEECCC
Confidence 8888888876 99999993
No 51
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=4.5e-08 Score=111.84 Aligned_cols=240 Identities=11% Similarity=0.034 Sum_probs=126.1
Q ss_pred HHhhcCCccccCCcHHHHHHHHHHHHHhhcCCCc---CchhHHhcCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhH
Q 008531 230 RFQEIGLERGWGDTAERALEMIQLLLDLLEAPDP---CTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYI 306 (562)
Q Consensus 230 ~~~~~g~e~gwg~~a~rv~e~~~~l~~~l~ap~p---~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYV 306 (562)
-+|.+|=|----++--|+.-|=++++.+=+--.. +-=|. | +-||+++-... ..||...++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~rIl~vi~sl-----------~~GGAEr~~ 300 (694)
T PRK15179 238 ALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPES-----F-VGPVLMINGSL-----------GAGGAERQF 300 (694)
T ss_pred HHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCC-----C-cceEEEEeCCC-----------CCCcHHHHH
Confidence 3667776655555566777776766655321100 11111 2 11677775322 569999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC----------CCCeEEEEecCCCCCCCC-cccccceeecCCCCcEEEEecCCCCCccc-
Q 008531 307 LDQVRALEDEMLLRIKQQGLD----------ITPQILIITRLLPDAVGT-TCGQRLEKVYGTKYSDILRVPFRTEKGVV- 374 (562)
Q Consensus 307 ldlarALe~~l~~~l~~~Gh~----------~~~~V~V~TR~~~~~~gt-~~~q~~E~i~~~~gv~I~RVP~~~~~~~~- 374 (562)
+++|.+|.+ .|.+ ....|.+++... ..|+ .....++ ..|+.|+.++..+..+..
T Consensus 301 ~~La~~l~~--------~~~~~~~~~g~g~~~~~~V~~~~~~~--~~g~~~~~~~L~----~~Gv~v~~l~~~~~~~~~~ 366 (694)
T PRK15179 301 VNTAVALQS--------AIQQGQSIAGYGVLGPVQVVCRSLRS--REGADFFAATLA----DAGIPVSVYSDMQAWGGCE 366 (694)
T ss_pred HHHHHHHHh--------cccCcccccCccCCCCcEEEEEeccc--ccCcchHHHHHH----hCCCeEEEeccCCccCccc
Confidence 999999987 4320 012566654321 1111 1111221 136788877655431110
Q ss_pred -ccccC-----ccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEE-EecCCCcCcCCCCc
Q 008531 375 -RKWIS-----RFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT-IAHALEKTKYPDSD 447 (562)
Q Consensus 375 -~~~is-----r~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~-T~HSLe~~Ky~~s~ 447 (562)
..++. +.++-.....+...+.+.+++ .+|||||+|.+.++++|.++++.+++|+|+ |.|+.....+. +
T Consensus 367 ~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~---~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~--~ 441 (694)
T PRK15179 367 FSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS---SVPSVVHIWQDGSIFACALAALLAGVPRIVLSVRTMPPVDRP--D 441 (694)
T ss_pred ccccchhhHHHhhhcchhHHHHHHHHHHHHHH---cCCcEEEEeCCcHHHHHHHHHHHcCCCEEEEEeCCCccccch--h
Confidence 00000 011111223334456665633 589999999998999999999999999876 67875322110 1
Q ss_pred chhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCc
Q 008531 448 IYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 527 (562)
Q Consensus 448 ~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD 527 (562)
.|. ...+.....+....++.+|++|..... .....+ +++..|+.|||||||
T Consensus 442 -~~~-------~~~~~l~~~l~~~~~~i~Vs~S~~~~~---~l~~~~------------------g~~~~kI~VI~NGVd 492 (694)
T PRK15179 442 -RYR-------VEYDIIYSELLKMRGVALSSNSQFAAH---RYADWL------------------GVDERRIPVVYNGLA 492 (694)
T ss_pred -HHH-------HHHHHHHHHHHhcCCeEEEeCcHHHHH---HHHHHc------------------CCChhHEEEECCCcC
Confidence 110 001111111122234456666654432 111112 233459999999999
Q ss_pred cCCccCC
Q 008531 528 MSIYFPY 534 (562)
Q Consensus 528 ~e~F~P~ 534 (562)
.+.|.|.
T Consensus 493 ~~~f~~~ 499 (694)
T PRK15179 493 PLKSVQD 499 (694)
T ss_pred HHhcCCC
Confidence 9988753
No 52
>PLN02275 transferase, transferring glycosyl groups
Probab=98.79 E-value=1.8e-07 Score=97.91 Aligned_cols=180 Identities=12% Similarity=-0.007 Sum_probs=102.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccc
Q 008531 297 PDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRK 376 (562)
Q Consensus 297 pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~ 376 (562)
||.|++. .+.+++++|.+ +||. +|+|++...+.. ..+ ....++++|+|+|. +.. . .
T Consensus 13 ~~~g~~~-r~~~~~~~l~~--------~~~~---~v~vi~~~~~~~-------~~~-~~~~~~v~v~r~~~-~~~--~-~ 68 (371)
T PLN02275 13 GDFGRSP-RMQYHALSLAR--------QASF---QVDVVAYGGSEP-------IPA-LLNHPSIHIHLMVQ-PRL--L-Q 68 (371)
T ss_pred cCCCCCH-HHHHHHHHHHh--------cCCc---eEEEEEecCCCC-------CHH-HhcCCcEEEEECCC-ccc--c-c
Confidence 3666665 78878888887 6762 699998643221 111 11224799999986 321 0 0
Q ss_pred ccCccCchH---HHHH---HHHHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCc
Q 008531 377 WISRFEVWP---YLET---YTEDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSD 447 (562)
Q Consensus 377 ~isr~~l~p---yLe~---fa~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~ 447 (562)
-+++ ++. |+.. +...+...+.. ...+||+||+|.. .++++|.++++..++|+|+|.|.+...... .+
T Consensus 69 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-~~ 144 (371)
T PLN02275 69 RLPR--VLYALALLLKVAIQFLMLLWFLCV-KIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLA-LS 144 (371)
T ss_pred cccc--chHHHHHHHHHHHHHHHHHHHHHh-hCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHh-cc
Confidence 1111 222 3322 11223333211 2469999999852 335688888999999999999986311100 00
Q ss_pred chhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCC
Q 008531 448 IYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG 525 (562)
Q Consensus 448 ~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpG 525 (562)
.. +.....++ ..|+++.+.||.||+.|....+ .+.+. + |+ ++.|||||
T Consensus 145 ~~------~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~----~l~~~--~-------------g~-----~i~vi~n~ 194 (371)
T PLN02275 145 LG------RSHPLVRLYRWYERHYGKMADGHLCVTKAMQH----ELDQN--W-------------GI-----RATVLYDQ 194 (371)
T ss_pred cC------CCCHHHHHHHHHHHHHHhhCCEEEECCHHHHH----HHHHh--c-------------CC-----CeEEECCC
Confidence 00 00011112 3588899999999999987654 11111 0 21 28999999
Q ss_pred CccCCccCCC
Q 008531 526 ADMSIYFPYT 535 (562)
Q Consensus 526 VD~e~F~P~~ 535 (562)
+ .+.|.|..
T Consensus 195 ~-~~~f~~~~ 203 (371)
T PLN02275 195 P-PEFFRPAS 203 (371)
T ss_pred C-HHHcCcCC
Confidence 5 57787754
No 53
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.78 E-value=2.1e-07 Score=93.07 Aligned_cols=171 Identities=16% Similarity=0.117 Sum_probs=97.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++.+. ..||...++.+++++|.+ +|| +|.|++...... . .. ..
T Consensus 1 ~il~~~~~~-----------~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~----~-~~---~~-- 47 (360)
T cd04951 1 KILYVITGL-----------GLGGAEKQVVDLADQFVA--------KGH----QVAIISLTGESE----V-KP---PI-- 47 (360)
T ss_pred CeEEEecCC-----------CCCCHHHHHHHHHHhccc--------CCc----eEEEEEEeCCCC----c-cc---hh--
Confidence 577776442 469999999988888876 899 899998642211 0 00 00
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc-CCcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl-gVP~V~T~H 436 (562)
....+..++.... .+.++.. ...+.+.+. +.+||+||+|....++++.+++... ++|++.|.|
T Consensus 48 ~~~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~---~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h 111 (360)
T cd04951 48 DATIILNLNMSKN------------PLSFLLA-LWKLRKILR---QFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAH 111 (360)
T ss_pred hccceEEeccccc------------chhhHHH-HHHHHHHHH---hcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEee
Confidence 0111123333211 1111111 112333342 3589999999987777777766654 678999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
+...... .+......+...++.+++.|....+ .+.+. | ..+.
T Consensus 112 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~~~~~----~~~~~----------------~-~~~~ 153 (360)
T cd04951 112 SKNEGGR-----------------LRMLAYRLTDFLSDLTTNVSKEALD----YFIAS----------------K-AFNA 153 (360)
T ss_pred ccCchhH-----------------HHHHHHHHHhhccCceEEEcHHHHH----HHHhc----------------c-CCCc
Confidence 7532110 0011223344557788877765543 11111 1 1234
Q ss_pred CceEEecCCCccCCccCCC
Q 008531 517 PKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~ 535 (562)
.|+.+||||+|...|.+..
T Consensus 154 ~~~~~i~ng~~~~~~~~~~ 172 (360)
T cd04951 154 NKSFVVYNGIDTDRFRKDP 172 (360)
T ss_pred ccEEEEccccchhhcCcch
Confidence 5999999999998887654
No 54
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.77 E-value=1.5e-07 Score=91.08 Aligned_cols=177 Identities=13% Similarity=0.131 Sum_probs=103.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++... ..||...++.+++++|.+ +|| +|.|+|........ .......
T Consensus 1 kIl~~~~~~-----------~~gG~~~~~~~l~~~l~~--------~g~----~v~v~~~~~~~~~~----~~~~~~~-- 51 (353)
T cd03811 1 KILFVIPSL-----------GGGGAERVLLNLANGLDK--------RGY----DVTLVVLRDEGDYL----ELLPSNV-- 51 (353)
T ss_pred CeEEEeecc-----------cCCCcchhHHHHHHHHHh--------cCc----eEEEEEcCCCCccc----cccccch--
Confidence 578887532 268889999988888865 899 99999875432210 0000000
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~H 436 (562)
........... ....+. +...+.+.+. +.+||+||+|+. ...+++...++. ++|.|.+.|
T Consensus 52 ~~~~~~~~~~~-----------~~~~~~----~~~~~~~~~~---~~~~dii~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 112 (353)
T cd03811 52 KLIPVRVLKLK-----------SLRDLL----AILRLRRLLR---KEKPDVVISHLTTTPNVLALLAARL-GTKLIVWEH 112 (353)
T ss_pred hhhceeeeecc-----------cccchh----HHHHHHHHHH---hcCCCEEEEcCccchhHHHHHHhhc-CCceEEEEc
Confidence 00001100000 011111 1223444442 348999999998 666666666555 999999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
.......... .... ..+...++.+|.+|+.|....+ .+.++ | ....
T Consensus 113 ~~~~~~~~~~------------~~~~-~~~~~~~~~~d~ii~~s~~~~~----~~~~~-----------~------~~~~ 158 (353)
T cd03811 113 NSLSLELKRK------------LRLL-LLIRKLYRRADKIVAVSEGVKE----DLLKL-----------L------GIPP 158 (353)
T ss_pred Ccchhhhccc------------hhHH-HHHHhhccccceEEEeccchhh----hHHHh-----------h------cCCc
Confidence 8654322100 0000 3467789999999998876554 11222 1 1123
Q ss_pred CceEEecCCCccCCccCCCh
Q 008531 517 PKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~~ 536 (562)
.++.|||||+|.+.|.+...
T Consensus 159 ~~~~vi~~~~~~~~~~~~~~ 178 (353)
T cd03811 159 DKIEVIYNPIDIEEIRALAE 178 (353)
T ss_pred cccEEecCCcChhhcCcccc
Confidence 59999999999988876543
No 55
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.77 E-value=1.5e-07 Score=92.10 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=103.5
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWI 378 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~i 378 (562)
.||..+++..++++|.+ +|+ +|.+++...... ....+. ..++.++.++....
T Consensus 11 ~gG~~~~~~~l~~~l~~--------~~~----~v~~~~~~~~~~----~~~~~~----~~~i~v~~~~~~~~-------- 62 (365)
T cd03807 11 VGGAERMLVRLLKGLDR--------DRF----EHVVISLTDRGE----LGEELE----EAGVPVYCLGKRPG-------- 62 (365)
T ss_pred CccHHHHHHHHHHHhhh--------ccc----eEEEEecCcchh----hhHHHH----hcCCeEEEEecccc--------
Confidence 49999999988888876 799 888888643221 111111 13677777765432
Q ss_pred CccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHh-cCCcEEEEecCCCcCcCCCCcchhcccCccc
Q 008531 379 SRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK-LGVTQCTIAHALEKTKYPDSDIYWKNLDDKY 457 (562)
Q Consensus 379 sr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArk-lgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y 457 (562)
...+..+ ..+.+.+. +.+||+||+|.+.....+..++.. .++|.+.+.|....... .|. .
T Consensus 63 --~~~~~~~----~~~~~~~~---~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~-----~ 123 (365)
T cd03807 63 --RPDPGAL----LRLYKLIR---RLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLG-----KKS-----T 123 (365)
T ss_pred --cccHHHH----HHHHHHHH---hhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCccccc-----chh-----H
Confidence 0111122 23444442 358999999987777777776666 78999999997643321 011 0
Q ss_pred ccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 458 HFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 458 ~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
......+....+.+|.+|+.|....+ ...++ | ....++.+||||+|...|.+..
T Consensus 124 --~~~~~~~~~~~~~~~~~i~~s~~~~~----~~~~~----------------~--~~~~~~~vi~~~~~~~~~~~~~ 177 (365)
T cd03807 124 --RLVARLRRLLSSFIPLIVANSAAAAE----YHQAI----------------G--YPPKKIVVIPNGVDTERFSPDL 177 (365)
T ss_pred --hHHHHHHHHhccccCeEEeccHHHHH----HHHHc----------------C--CChhheeEeCCCcCHHhcCCcc
Confidence 01112355677889999988876554 11111 1 2245899999999998887654
No 56
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.72 E-value=1.2e-07 Score=98.08 Aligned_cols=136 Identities=12% Similarity=-0.004 Sum_probs=71.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccc
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKW 377 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~ 377 (562)
..||...++.++++.|.+ .|| +|++++....+. ..+.. ..+..+..+.. ..
T Consensus 10 ~~GGv~~~~~~l~~~l~~--------~g~----~v~~~~~~~~~~-------~~~~~-----~~~~~~~~g~~-----~~ 60 (372)
T cd03792 10 YGGGVAEILHSLVPLMRD--------LGV----DTRWEVIKGDPE-------FFNVT-----KKFHNALQGAD-----IE 60 (372)
T ss_pred CCCcHHHHHHHHHHHHHH--------cCC----CceEEecCCChh-------HHHHH-----HHhhHhhcCCC-----CC
Confidence 679999999998888887 799 899987632211 01100 01111111221 01
Q ss_pred cCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCccc
Q 008531 378 ISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKY 457 (562)
Q Consensus 378 isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y 457 (562)
++.. .+.++..+........ ....+||+||+|++....+. .+++..++|+|.+.|+..... ....|
T Consensus 61 ~~~~-~~~~~~~~~~~~~~~~--~~~~~~Dvv~~h~~~~~~~~-~~~~~~~~~~i~~~H~~~~~~---~~~~~------- 126 (372)
T cd03792 61 LSEE-EKEIYLEWNEENAERP--LLDLDADVVVIHDPQPLALP-LFKKKRGRPWIWRCHIDLSSP---NRRVW------- 126 (372)
T ss_pred CCHH-HHHHHHHHHHHHhccc--cccCCCCEEEECCCCchhHH-HhhhcCCCeEEEEeeeecCCC---cHHHH-------
Confidence 1111 1112222111111111 12458999999987543222 223334999999999743210 01111
Q ss_pred ccchhHHHHHHHHhhCCEEEecCHH
Q 008531 458 HFSCQFTADLIAMNHTDFIITSTFQ 482 (562)
Q Consensus 458 ~~s~rf~aE~~amn~AD~IIaSS~q 482 (562)
...+..++.+|.+|++|.+
T Consensus 127 ------~~~~~~~~~~d~~i~~~~~ 145 (372)
T cd03792 127 ------DFLQPYIEDYDAAVFHLPE 145 (372)
T ss_pred ------HHHHHHHHhCCEEeecHHH
Confidence 1224568899999988743
No 57
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.72 E-value=1e-07 Score=98.56 Aligned_cols=167 Identities=10% Similarity=0.114 Sum_probs=95.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCCeEEEEecCCCCCCCCcccccceee
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQ--GLDITPQILIITRLLPDAVGTTCGQRLEKV 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~--Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i 354 (562)
|||+++++.. +..||...++.+++++|.+ + || +|.++++..+... .....+
T Consensus 1 mkI~~~~~~~----------~~~GG~e~~~~~l~~~L~~--------~~~g~----~v~v~~~~~~~~~-----~~~~~~ 53 (359)
T PRK09922 1 MKIAFIGEAV----------SGFGGMETVISNVINTFEE--------SKINC----EMFFFCRNDKMDK-----AWLKEI 53 (359)
T ss_pred CeeEEecccc----------cCCCchhHHHHHHHHHhhh--------cCcce----eEEEEecCCCCCh-----HHHHhc
Confidence 7999997531 2569999999999999887 7 66 8888887533210 001101
Q ss_pred cCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCc--EE
Q 008531 355 YGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT--QC 432 (562)
Q Consensus 355 ~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP--~V 432 (562)
+. +..++.... .+... + .....+.+.+. +.+||+||+|...+..++..+++..++| ++
T Consensus 54 ----~~-~~~~~~~~~-----~~~~~----~---~~~~~l~~~l~---~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T PRK09922 54 ----KY-AQSFSNIKL-----SFLRR----A---KHVYNFSKWLK---ETQPDIVICIDVISCLYANKARKKSGKQFKIF 113 (359)
T ss_pred ----ch-hcccccchh-----hhhcc----c---HHHHHHHHHHH---hcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEE
Confidence 00 001111110 00000 0 11123444452 3689999999876677788888888866 45
Q ss_pred EEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeeccc
Q 008531 433 TIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGI 512 (562)
Q Consensus 433 ~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi 512 (562)
.+.|.....+. .+ +...+..||.+++.|....+ .+.++ |
T Consensus 114 ~~~h~~~~~~~------------~~--------~~~~~~~~d~~i~~S~~~~~----~~~~~----------------~- 152 (359)
T PRK09922 114 SWPHFSLDHKK------------HA--------ECKKITCADYHLAISSGIKE----QMMAR----------------G- 152 (359)
T ss_pred EEecCcccccc------------hh--------hhhhhhcCCEEEEcCHHHHH----HHHHc----------------C-
Confidence 55564211100 00 11124789999999876543 22222 2
Q ss_pred ccCCCceEEecCCCccCCcc
Q 008531 513 DVFDPKFNIVSPGADMSIYF 532 (562)
Q Consensus 513 ~v~dpKi~VIPpGVD~e~F~ 532 (562)
+...|+.|||||+|.+.|.
T Consensus 153 -~~~~ki~vi~N~id~~~~~ 171 (359)
T PRK09922 153 -ISAQRISVIYNPVEIKTII 171 (359)
T ss_pred -CCHHHEEEEcCCCCHHHcc
Confidence 2345999999999976654
No 58
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=98.72 E-value=2.6e-08 Score=105.04 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=121.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
++|+|+|+|-| |.+||...+|..++..|=+ .|| +|.|+|...++..|. ....
T Consensus 1 ~~i~mVsdff~---------P~~ggveshiy~lSq~li~--------lgh----kVvvithayg~r~gi------rylt- 52 (426)
T KOG1111|consen 1 SRILMVSDFFY---------PSTGGVESHIYALSQCLIR--------LGH----KVVVITHAYGNRVGI------RYLT- 52 (426)
T ss_pred CcceeeCcccc---------cCCCChhhhHHHhhcchhh--------cCC----eEEEEeccccCccce------eeec-
Confidence 47999999854 5899999999977777665 899 999999988776442 2232
Q ss_pred CCCcEEEEecCCCCCcccccccC-ccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHH--HHHHHHHhcCCcEEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWIS-RFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNI--VASLLAHKLGVTQCT 433 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~is-r~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGl--VA~lLArklgVP~V~ 433 (562)
.+..|+.+|+...- -.--++ -+.-.|.+. ..+.. .+..+||+|.+.|.+ =|..-|+.+|.-.|+
T Consensus 53 -~glkVyylp~~v~~--n~tT~ptv~~~~Pllr-------~i~lr---E~I~ivhghs~fS~lahe~l~hartMGlktVf 119 (426)
T KOG1111|consen 53 -NGLKVYYLPAVVGY--NQTTFPTVFSDFPLLR-------PILLR---ERIEIVHGHSPFSYLAHEALMHARTMGLKTVF 119 (426)
T ss_pred -CCceEEEEeeeeee--cccchhhhhccCcccc-------hhhhh---hceEEEecCChHHHHHHHHHHHHHhcCceEEE
Confidence 37999999987631 000010 111223332 12222 378999999876666 477889999999999
Q ss_pred EecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccc
Q 008531 434 IAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGID 513 (562)
Q Consensus 434 T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~ 513 (562)
|=|++.-..-. +..|-+ --++ ..+...|.+|+.|+.-.++ ++ .|. .
T Consensus 120 TdHSlfGfad~--~si~~n------~ll~-----~sL~~id~~IcVshtsken---tv--------------lr~----~ 165 (426)
T KOG1111|consen 120 TDHSLFGFADI--GSILTN------KLLP-----LSLANIDRIICVSHTSKEN---TV--------------LRG----A 165 (426)
T ss_pred eccccccccch--hhhhhc------ceee-----eeecCCCcEEEEeecCCCc---eE--------------EEe----c
Confidence 99997433211 111211 0122 2578899999988755442 11 111 1
Q ss_pred cCCCceEEecCCCccCCccCCCh
Q 008531 514 VFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 514 v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
+...|+.||||-||.+.|.|...
T Consensus 166 L~p~kvsvIPnAv~~~~f~P~~~ 188 (426)
T KOG1111|consen 166 LAPAKVSVIPNAVVTHTFTPDAA 188 (426)
T ss_pred cCHhHeeeccceeeccccccCcc
Confidence 22339999999999999999653
No 59
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.70 E-value=1.8e-07 Score=92.90 Aligned_cols=182 Identities=14% Similarity=0.006 Sum_probs=101.4
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++.+-. ....||...|+.+++++|.+ .|| .|.+++........ .... ..
T Consensus 1 ~ili~~~~~~--------~~~~gG~~~~~~~l~~~L~~--------~~~----~v~~~~~~~~~~~~----~~~~-~~-- 53 (365)
T cd03809 1 RILIDARFLA--------SRRPTGIGRYARELLRALLK--------LDP----EEVLLLLPGAPGLL----LLPL-RA-- 53 (365)
T ss_pred CEEEechhhh--------cCCCCcHHHHHHHHHHHHHh--------cCC----ceEEEEecCccccc----cccc-hh--
Confidence 5777775431 11689999999998888887 799 88888876433210 0000 00
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
.... +..... ...+.....+.......+ . ..+||+||+|++..... +..++|+|.+.|.
T Consensus 54 -~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-~--~~~~Dii~~~~~~~~~~-----~~~~~~~i~~~hd 112 (365)
T cd03809 54 -ALRL--LLRLPR----------RLLWGLLFLLRAGDRLLL-L--LLGLDLLHSPHNTAPLL-----RLRGVPVVVTIHD 112 (365)
T ss_pred -cccc--cccccc----------ccccchhhHHHHHHHHHh-h--hcCCCeeeecccccCcc-----cCCCCCEEEEecc
Confidence 0111 000000 011111111111112222 1 35899999999765544 6789999999997
Q ss_pred CCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCC
Q 008531 438 LEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDP 517 (562)
Q Consensus 438 Le~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dp 517 (562)
+....+......+ ........++.+++.||.+|+.|....+. ....| +....
T Consensus 113 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~i~~s~~~~~~---~~~~~------------------~~~~~ 164 (365)
T cd03809 113 LIPLRFPEYFSPG-------FRRYFRRLLRRALRRADAIITVSEATKRD---LLRYL------------------GVPPD 164 (365)
T ss_pred chhhhCcccCCHH-------HHHHHHHHHHHHHHHcCEEEEccHHHHHH---HHHHh------------------CcCHH
Confidence 6432221100000 00011135677899999999998765541 11112 11234
Q ss_pred ceEEecCCCccCCccCCC
Q 008531 518 KFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 518 Ki~VIPpGVD~e~F~P~~ 535 (562)
++.|||||+|...|.+..
T Consensus 165 ~~~vi~~~~~~~~~~~~~ 182 (365)
T cd03809 165 KIVVIPLGVDPRFRPPPA 182 (365)
T ss_pred HEEeeccccCccccCCCc
Confidence 999999999998887654
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.66 E-value=9.4e-07 Score=86.10 Aligned_cols=171 Identities=15% Similarity=0.158 Sum_probs=104.6
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWI 378 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~i 378 (562)
.||...++.+++++|.+ +|| +|+++|....... ..+ ..++.++.+|.... ..
T Consensus 9 ~~g~~~~~~~l~~~L~~--------~g~----~v~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~------~~ 60 (359)
T cd03808 9 DGGLYSFRLPLIKALRA--------AGY----EVHVVAPPGDELE------ELE----ALGVKVIPIPLDRR------GI 60 (359)
T ss_pred chhHHHHHHHHHHHHHh--------cCC----eeEEEecCCCccc------ccc----cCCceEEecccccc------cc
Confidence 57888899988888765 899 8999987543210 111 13688888877652 11
Q ss_pred CccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHH-hcCCcEEEEecCCCcCcCCCCcchhcccCccc
Q 008531 379 SRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAH-KLGVTQCTIAHALEKTKYPDSDIYWKNLDDKY 457 (562)
Q Consensus 379 sr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLAr-klgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y 457 (562)
+ .+..+. ....+.+.+. +.+||+||+|.+..+.++.++++ ..+.+++++.|........ ...
T Consensus 61 ~---~~~~~~-~~~~~~~~~~---~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~--------- 123 (359)
T cd03808 61 N---PFKDLK-ALLRLYRLLR---KERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTS-GGL--------- 123 (359)
T ss_pred C---hHhHHH-HHHHHHHHHH---hcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhcc-chh---------
Confidence 1 111111 1123444442 36899999998777777887777 4456688888876433211 000
Q ss_pred ccchhH-HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 458 HFSCQF-TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 458 ~~s~rf-~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
....+ ..++.+++.||.||+.|....+ .+.++. + .....++.++|+|+|.+.|.+..
T Consensus 124 -~~~~~~~~~~~~~~~~d~ii~~s~~~~~----~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~ 181 (359)
T cd03808 124 -KRRLYLLLERLALRFTDKVIFQNEDDRD----LALKLG---------------I-IKKKKTVLIPGSGVDLDRFSPSP 181 (359)
T ss_pred -HHHHHHHHHHHHHhhccEEEEcCHHHHH----HHHHhc---------------C-CCcCceEEecCCCCChhhcCccc
Confidence 01111 3577889999999999987654 122221 1 10134888999999998886644
No 61
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=2.6e-07 Score=103.19 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=112.2
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCc--
Q 008531 295 GYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKG-- 372 (562)
Q Consensus 295 G~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~-- 372 (562)
|+--.||...-+..+|-++++...+.=+-.|+.+...|.+++|......|.+..-+.-.-..-+...|-+++-.-++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (578)
T PRK15490 169 GSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGNLFDDAT 248 (578)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchhhhhhcc
Confidence 344579999999988888877655554446777888999999988655554442211000111233344444111110
Q ss_pred ----ccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEE-EEecCCCcCcCCCCc
Q 008531 373 ----VVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQC-TIAHALEKTKYPDSD 447 (562)
Q Consensus 373 ----~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V-~T~HSLe~~Ky~~s~ 447 (562)
.++.+++ .+.|.+-.-...+...++ ..+||+||+|..-+++.|.++|+..|+|++ ++.|+. +.. .
T Consensus 249 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~ir---~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~~----~~~-~ 318 (578)
T PRK15490 249 IESPELRLLLS--HLPPVCKYGIKHLVPHLC---ERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRGL----PPV-V 318 (578)
T ss_pred ccchHHHHHHh--cCChHHHHHHHHHHHHHH---HcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeeccc----CCc-c
Confidence 0111111 111111111223344443 369999999987777888888888999995 557761 110 0
Q ss_pred chhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCc
Q 008531 448 IYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 527 (562)
Q Consensus 448 ~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD 527 (562)
-...+..|+..+..|+.++..+. -+.-+...-..+..+ + +++..|+.|||||||
T Consensus 319 -----------~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~--------l------gip~~KI~VIyNGVD 372 (578)
T PRK15490 319 -----------RKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADW--------L------KLEAKHFQVVYNGVL 372 (578)
T ss_pred -----------hhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHH--------h------CCCHHHEEEEeCCcc
Confidence 01223455566777777665432 111010011122211 1 233449999999999
Q ss_pred cCCccCCC
Q 008531 528 MSIYFPYT 535 (562)
Q Consensus 528 ~e~F~P~~ 535 (562)
++.|.|..
T Consensus 373 ~~rf~p~~ 380 (578)
T PRK15490 373 PPSTEPSS 380 (578)
T ss_pred hhhcCccc
Confidence 99998854
No 62
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.65 E-value=1.1e-06 Score=87.38 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=95.8
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||+++++.. |..||...++.+++++|.+ .|| +|.|++...+... .....
T Consensus 1 kI~~v~~~~----------~~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~~-------~~~~~-- 49 (366)
T cd03822 1 RIALVSPYP----------PRKCGIATFTTDLVNALSA--------RGP----DVLVVSVAALYPS-------LLYGG-- 49 (366)
T ss_pred CeEEecCCC----------CCCCcHHHHHHHHHHHhhh--------cCC----eEEEEEeecccCc-------ccCCC--
Confidence 689998642 3589999999999988887 799 8888876433211 00000
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcC------hHHHHHHHHHhcCCcE
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSD------GNIVASLLAHKLGVTQ 431 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywd------sGlVA~lLArklgVP~ 431 (562)
.....+. ......+.+ ..+.+.+. ..+||+||+|.|. .+..+..+++..++|+
T Consensus 50 -~~~~~~~------------~~~~~~~~~-----~~~~~~~~---~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (366)
T cd03822 50 -EQEVVRV------------IVLDNPLDY-----RRAARAIR---LSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPV 108 (366)
T ss_pred -cccceee------------eecCCchhH-----HHHHHHHh---hcCCCEEEEeeccccccchhhHHHHHHHhhcCCCE
Confidence 0000000 000111111 12333332 3589999998742 2223333345689999
Q ss_pred EEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecc
Q 008531 432 CTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHG 511 (562)
Q Consensus 432 V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~g 511 (562)
|.+.|... .. .. . ...-..+...++.||.||+.|..... ++..
T Consensus 109 i~~~h~~~-~~---~~-~----------~~~~~~~~~~~~~~d~ii~~s~~~~~-------~~~~--------------- 151 (366)
T cd03822 109 VVTLHTVL-LH---EP-R----------PGDRALLRLLLRRADAVIVMSSELLR-------ALLL--------------- 151 (366)
T ss_pred EEEEecCC-cc---cc-c----------hhhhHHHHHHHhcCCEEEEeeHHHHH-------HHHh---------------
Confidence 99999861 10 00 0 01112456779999999999733332 2211
Q ss_pred cccCCCceEEecCCCccCCccCC
Q 008531 512 IDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 512 i~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
..+..++.+||||+|...|.+.
T Consensus 152 -~~~~~~~~~i~~~~~~~~~~~~ 173 (366)
T cd03822 152 -RAYPEKIAVIPHGVPDPPAEPP 173 (366)
T ss_pred -hcCCCcEEEeCCCCcCcccCCc
Confidence 1113599999999998877654
No 63
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.63 E-value=2.1e-06 Score=83.93 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
-||+||.-.|.++ --||-.+.|-+|+..|.+ +|| +|.|+++..... .. +..
T Consensus 2 kkIaIiGtrGIPa--------~YGGfET~ve~L~~~l~~--------~g~----~v~Vyc~~~~~~------~~-~~~-- 52 (185)
T PF09314_consen 2 KKIAIIGTRGIPA--------RYGGFETFVEELAPRLVS--------KGI----DVTVYCRSDYYP------YK-EFE-- 52 (185)
T ss_pred ceEEEEeCCCCCc--------ccCcHHHHHHHHHHHHhc--------CCc----eEEEEEccCCCC------CC-Ccc--
Confidence 4899999887653 579999999877766665 899 999999864321 11 111
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHH--hcCCcEEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAH--KLGVTQCT 433 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLAr--klgVP~V~ 433 (562)
..|++++.||.... | .. ..+.-.+-.+ ..+...+ +..+.++|+||.+.- .+++++..+.. +.|+|+++
T Consensus 53 y~gv~l~~i~~~~~-g----~~--~si~yd~~sl-~~al~~~-~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~v 123 (185)
T PF09314_consen 53 YNGVRLVYIPAPKN-G----SA--ESIIYDFLSL-LHALRFI-KQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVV 123 (185)
T ss_pred cCCeEEEEeCCCCC-C----ch--HHHHHHHHHH-HHHHHHH-hhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEE
Confidence 24899999987753 1 00 1111111111 1122222 212346899999975 47777766654 35779999
Q ss_pred EecCCCcCcCCCCcchhcccCcccccchhH--HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecc
Q 008531 434 IAHALEKTKYPDSDIYWKNLDDKYHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHG 511 (562)
Q Consensus 434 T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~g 511 (562)
+.||+|.-+- .|.. +.+++ ..|+.+.+.||.+|+-|....+ .+.
T Consensus 124 N~DGlEWkR~-----KW~~------~~k~~lk~~E~~avk~ad~lIaDs~~I~~-------y~~---------------- 169 (185)
T PF09314_consen 124 NMDGLEWKRA-----KWGR------PAKKYLKFSEKLAVKYADRLIADSKGIQD-------YIK---------------- 169 (185)
T ss_pred CCCcchhhhh-----hcCH------HHHHHHHHHHHHHHHhCCEEEEcCHHHHH-------HHH----------------
Confidence 9999985431 2332 23333 4799999999999998874332 121
Q ss_pred cccCC-CceEEecCCCc
Q 008531 512 IDVFD-PKFNIVSPGAD 527 (562)
Q Consensus 512 i~v~d-pKi~VIPpGVD 527 (562)
+.+. ++..+||.|.|
T Consensus 170 -~~y~~~~s~~IaYGad 185 (185)
T PF09314_consen 170 -ERYGRKKSTFIAYGAD 185 (185)
T ss_pred -HHcCCCCcEEecCCCC
Confidence 1234 68999999987
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.62 E-value=1.3e-06 Score=84.73 Aligned_cols=172 Identities=14% Similarity=0.163 Sum_probs=103.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
||++++.... ..||...++.+++++|.+ +|| +|.|+|....+. ...+ + .
T Consensus 1 kI~i~~~~~~----------~~gG~~~~~~~l~~~L~~--------~g~----~v~v~~~~~~~~------~~~~-~--~ 49 (348)
T cd03820 1 KILFVIPSLG----------NAGGAERVLSNLANALAE--------KGH----EVTIISLDKGEP------PFYE-L--D 49 (348)
T ss_pred CeEEEecccc----------CCCChHHHHHHHHHHHHh--------CCC----eEEEEecCCCCC------Cccc-c--C
Confidence 5788875421 279999999988888876 799 999999754330 0111 1 1
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcC-CcEEEEec
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLG-VTQCTIAH 436 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklg-VP~V~T~H 436 (562)
+++.+.+++..... +. +.+ ..+...+.+.+ + ..+||+||+|++. ..........+ +|++.+.|
T Consensus 50 ~~~~~~~~~~~~~~-----~~-----~~~-~~~~~~~~~~l-~--~~~~d~i~~~~~~--~~~~~~~~~~~~~~~i~~~~ 113 (348)
T cd03820 50 PKIKVIDLGDKRDS-----KL-----LAR-FKKLRRLRKLL-K--NNKPDVVISFLTS--LLTFLASLGLKIVKLIVSEH 113 (348)
T ss_pred Cccceeeccccccc-----ch-----hcc-ccchHHHHHhh-c--ccCCCEEEEcCch--HHHHHHHHhhccccEEEecC
Confidence 36777777665431 00 000 11112333344 2 3689999999975 22233333445 49999999
Q ss_pred CCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 437 ALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 437 SLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
....... .. ......+..+++.||.||+.|..... ..+ ..+.
T Consensus 114 ~~~~~~~--~~------------~~~~~~~~~~~~~~d~ii~~s~~~~~------~~~------------------~~~~ 155 (348)
T cd03820 114 NSPDAYK--KR------------LRRLLLRRLLYRRADAVVVLTEEDRA------LYY------------------KKFN 155 (348)
T ss_pred CCccchh--hh------------hHHHHHHHHHHhcCCEEEEeCHHHHH------Hhh------------------ccCC
Confidence 7532211 00 01111467789999999999976631 011 1124
Q ss_pred CceEEecCCCccCCccCC
Q 008531 517 PKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~ 534 (562)
.++.|||||+|...+.+.
T Consensus 156 ~~~~vi~~~~~~~~~~~~ 173 (348)
T cd03820 156 KNVVVIPNPLPFPPEEPS 173 (348)
T ss_pred CCeEEecCCcChhhcccc
Confidence 599999999999877654
No 65
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.60 E-value=6.8e-08 Score=101.28 Aligned_cols=194 Identities=13% Similarity=0.104 Sum_probs=99.3
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCc-cc
Q 008531 296 YPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKG-VV 374 (562)
Q Consensus 296 ~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~-~~ 374 (562)
-|+.||++ .+..+.++|++ .| +|+++|......+ ....+.++.+ ++.+.++..+.....- -+
T Consensus 11 P~~~G~~~-r~~~~~~~L~~---------~~----~v~l~~~~~~~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~ 73 (397)
T TIGR03087 11 PPNKGDKI-RSFHLLRHLAA---------RH----RVHLGTFVDDPED-WQYAAALRPL--CEEVCVVPLDPRVARLRSL 73 (397)
T ss_pred CCCCCCcE-eHHHHHHHHHh---------cC----cEEEEEeCCCccc-HHHHHHHHHH--hheeEEeecCcHHHHHHHH
Confidence 35677755 88888999875 57 8999997532211 1111112222 1234443332221100 00
Q ss_pred ccccCccCc-hHHH--HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHH-HhcCCcEEEEecCCCcCcC---CCCc
Q 008531 375 RKWISRFEV-WPYL--ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLA-HKLGVTQCTIAHALEKTKY---PDSD 447 (562)
Q Consensus 375 ~~~isr~~l-~pyL--e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLA-rklgVP~V~T~HSLe~~Ky---~~s~ 447 (562)
..+.+...+ ..|. ..+.+.+.+.+ + ..+||+||++.... +..+. +..++|.|++.|.++...+ ....
T Consensus 74 ~~l~~~~p~~~~~~~~~~~~~~l~~~~-~--~~~~D~v~~~~~~~---~~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~ 147 (397)
T TIGR03087 74 LGLLTGEPLSLPYYRSRRLARWVNALL-A--AEPVDAIVVFSSAM---AQYVTPHVRGVPRIVDFVDVDSDKWLQYARTK 147 (397)
T ss_pred hhhcCCCCCcchhhCCHHHHHHHHHHH-h--hCCCCEEEEecccc---ceeccccccCCCeEeehhhHHHHHHHHHHhcc
Confidence 011111100 1111 22333333333 2 36899999997532 33333 4568999999997642211 0000
Q ss_pred chhcccCccccc-chhH-HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCC
Q 008531 448 IYWKNLDDKYHF-SCQF-TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPG 525 (562)
Q Consensus 448 ~~w~~~e~~y~~-s~rf-~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpG 525 (562)
.|.. ...|.. .+.+ ..|+.+++.||.||+.|..+.+ .+.++. .....|+.|||||
T Consensus 148 -~~~~-~~~~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~----~l~~~~-----------------~~~~~~v~vipng 204 (397)
T TIGR03087 148 -RWPL-RWIYRREGRLLLAYERAIAARFDAATFVSRAEAE----LFRRLA-----------------PEAAGRITAFPNG 204 (397)
T ss_pred -Ccch-hHHHHHHHHHHHHHHHHHHhhCCeEEEcCHHHHH----HHHHhC-----------------CCCCCCeEEeecc
Confidence 0000 000111 1112 3688899999999999988775 222221 1123489999999
Q ss_pred CccCCccCCC
Q 008531 526 ADMSIYFPYT 535 (562)
Q Consensus 526 VD~e~F~P~~ 535 (562)
||.+.|.|..
T Consensus 205 vd~~~f~~~~ 214 (397)
T TIGR03087 205 VDADFFSPDR 214 (397)
T ss_pred cchhhcCCCc
Confidence 9999887653
No 66
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=3.7e-07 Score=100.62 Aligned_cols=227 Identities=15% Similarity=0.116 Sum_probs=122.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceee--
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV-- 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i-- 354 (562)
|||+.+|..-.+ .-+|||+.--+-.+.++|++ .|+ +|.|+....+.-.. ......+.+
T Consensus 1 M~Il~v~~E~~p-------~vK~GGLaDv~~alpk~L~~--------~g~----~v~v~lP~y~~~~~-~~~~~~~~~~~ 60 (487)
T COG0297 1 MKILFVASEIFP-------FVKTGGLADVVGALPKALAK--------RGV----DVRVLLPSYPKVQK-EWRDLLKVVGK 60 (487)
T ss_pred CcceeeeeeecC-------ccccCcHHHHHHHhHHHHHh--------cCC----eEEEEcCCchhhhh-hhccccceeeE
Confidence 688888866432 24899999777766666666 899 89999887762211 111111110
Q ss_pred -----cCCCCcEEEEecCCC--CCc-c--cccccCcc--CchH------HHHHHHHHHHHHHHHHcC--CCCCEEEecCc
Q 008531 355 -----YGTKYSDILRVPFRT--EKG-V--VRKWISRF--EVWP------YLETYTEDVAVEIAKELQ--GKPDLIIGNYS 414 (562)
Q Consensus 355 -----~~~~gv~I~RVP~~~--~~~-~--~~~~isr~--~l~p------yLe~fa~~~~~~i~~~~~--~~PDLIHaHyw 414 (562)
.+.....++...... .+. + .+.+..|+ ..+. ....|...+...+ .... ..|||||+|.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~v~~~lid~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~-~~~~~~~~pDIvH~hDW 139 (487)
T COG0297 61 FGVLKGGRAQLFIVKEYGKDGGVDLYLIDNPALFKRPDSTLYGYYDNAERFAFFSLAAAELA-PLGLISWLPDIVHAHDW 139 (487)
T ss_pred eeeeecccceEEEEEeecccCCCcEEEecChhhcCccccccCCCCcHHHHHHHHHHHHHHHh-hhcCCCCCCCEEEeecH
Confidence 111111111111100 000 0 01222231 1222 2333444444333 2222 47999999999
Q ss_pred ChHHHHHHHHHh----cCCcEEEEecCCCcCcCCC-CcchhcccC-cccc-----cchhHHHHHHHHhhCCEEEecCHHH
Q 008531 415 DGNIVASLLAHK----LGVTQCTIAHALEKTKYPD-SDIYWKNLD-DKYH-----FSCQFTADLIAMNHTDFIITSTFQE 483 (562)
Q Consensus 415 dsGlVA~lLArk----lgVP~V~T~HSLe~~Ky~~-s~~~w~~~e-~~y~-----~s~rf~aE~~amn~AD~IIaSS~qE 483 (562)
.+++++..++.. ..+|.|+|.|.+..-..-. .-..|-.++ ..|. +-.++..++-.+..||.|.|+|+.-
T Consensus 140 qt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ad~vttVSptY 219 (487)
T COG0297 140 QTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYYADAVTTVSPTY 219 (487)
T ss_pred HHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhheeccEEEEECHHH
Confidence 999999999994 5899999999886432211 000111111 0111 1133455677899999999988643
Q ss_pred HhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCCh
Q 008531 484 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTE 536 (562)
Q Consensus 484 i~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~ 536 (562)
..+ -..-.|+ .-|-|+.+. ...++.-|=||+|.+.+.|.+.
T Consensus 220 a~E--i~t~~~g----~gl~g~l~~------~~~~l~GI~NgiD~~~wnp~~d 260 (487)
T COG0297 220 AGE--IYTPEYG----EGLEGLLSW------RSGKLSGILNGIDYDLWNPETD 260 (487)
T ss_pred HHh--hcccccc----ccchhhhhh------ccccEEEEEeeEEecccCcccc
Confidence 321 0111121 112233321 1248888999999999988654
No 67
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.35 E-value=6.5e-06 Score=88.22 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=25.0
Q ss_pred CCCCCEEEecCcChHHHHH---------HHHHhcCCcEEEEecCCC
Q 008531 403 QGKPDLIIGNYSDGNIVAS---------LLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~---------lLArklgVP~V~T~HSLe 439 (562)
..+|||||.|-..++++.. +..++.++|+|.|.|-..
T Consensus 92 ~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~ 137 (405)
T PRK10125 92 TPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHW 137 (405)
T ss_pred ccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEeccccc
Confidence 4689999999654432211 113456899999999664
No 68
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.29 E-value=9.9e-07 Score=95.72 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCcCc-CCC-CcchhcccCcccccchh-H-HHHHHHHhhCCEEEe
Q 008531 404 GKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTK-YPD-SDIYWKNLDDKYHFSCQ-F-TADLIAMNHTDFIIT 478 (562)
Q Consensus 404 ~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~~K-y~~-s~~~w~~~e~~y~~s~r-f-~aE~~amn~AD~IIa 478 (562)
.++|+||+|.. .+|++|.++++++|+|+|+|.|+..... +.. ....|.....+ ....+ + ..++.+++.||.||+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ad~Ii~ 250 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFR-RLWIRFFESLGRLAYQAADRITT 250 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHHHhCCEEEe
Confidence 47899999974 6788999999999999999999864210 000 00001100000 01111 1 346778999999999
Q ss_pred cCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 479 STFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 479 SS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.|..... ...++ +....|+.|||||||.+.|.|..
T Consensus 251 ~s~~~~~----~~~~~------------------g~~~~ki~vIpNgid~~~f~~~~ 285 (475)
T cd03813 251 LYEGNRE----RQIED------------------GADPEKIRVIPNGIDPERFAPAR 285 (475)
T ss_pred cCHHHHH----HHHHc------------------CCCHHHeEEeCCCcCHHHcCCcc
Confidence 9876543 11222 22345999999999999997753
No 69
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.11 E-value=6.7e-05 Score=80.54 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=101.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCC------CCcccccceeecCCCCcEEEEec-CCCC
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAV------GTTCGQRLEKVYGTKYSDILRVP-FRTE 370 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~------gt~~~q~~E~i~~~~gv~I~RVP-~~~~ 370 (562)
.-||-..-+++.|++|.+. ..|| +|.|+|....... ...|.+ +.+. ++..++++. .+..
T Consensus 12 ~ggg~ervl~~a~~~l~~~------~~~~----~v~i~t~~~~~~~~~~l~~~~~~f~--~~~~--~~~~~~~~~~~~~~ 77 (419)
T cd03806 12 AGGGGERVLWCAVRALQKR------YPNN----IVVIYTGDLDATPEEILEKVESRFN--IELD--RPRIVFFLLKYRKL 77 (419)
T ss_pred CCCCchHHHHHHHHHHHHh------CCCc----EEEEECCCCCCCHHHHHHHHHHhcC--eecC--CCceEEEEecceee
Confidence 4469999999999999871 2377 8999998643310 001222 1122 356666664 2211
Q ss_pred CcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-cCh-HHHHHHHHHhcCCcEEEEecCCCcC-cCCCCc
Q 008531 371 KGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-SDG-NIVASLLAHKLGVTQCTIAHALEKT-KYPDSD 447 (562)
Q Consensus 371 ~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-wds-GlVA~lLArklgVP~V~T~HSLe~~-Ky~~s~ 447 (562)
+.++...|+.++ -.+...+...+.+..+.+||+|..|- |.. ..++.+++ ++|+|...|--+.. ... ..
T Consensus 78 --~~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~---~~~~i~y~h~P~~~~d~l-~~ 148 (419)
T cd03806 78 --VEASTYPRFTLL---GQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLG---GCPVGAYVHYPTISTDML-QK 148 (419)
T ss_pred --eccccCCceeeH---HHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhc---CCeEEEEecCCcchHHHH-HH
Confidence 111222233222 33333444444332245899999886 543 33333333 88999999921100 000 00
Q ss_pred chhcc-----c--Ccccc---cchhH------HHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecc
Q 008531 448 IYWKN-----L--DDKYH---FSCQF------TADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHG 511 (562)
Q Consensus 448 ~~w~~-----~--e~~y~---~s~rf------~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~g 511 (562)
..... . -.+.. ..+.+ ..|+++++.||.||++|....+ .+.+. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~----~~~~~-----------~----- 208 (419)
T cd03806 149 VRSREASYNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRN----HIRSL-----------W----- 208 (419)
T ss_pred HhhccccccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHH----HHHHH-----------h-----
Confidence 00000 0 00000 11111 2688999999999999976553 12211 1
Q ss_pred cccCCCceEEecCCCccCCccCC
Q 008531 512 IDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 512 i~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
. ...|+.||+||+|++.|.+.
T Consensus 209 -~-~~~~~~vi~~gvd~~~~~~~ 229 (419)
T cd03806 209 -K-RNTKPSIVYPPCDVEELLKL 229 (419)
T ss_pred -C-cCCCcEEEcCCCCHHHhccc
Confidence 1 12389999999999888654
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.08 E-value=8.8e-06 Score=84.83 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhh
Q 008531 393 DVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNH 472 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~ 472 (562)
.+.+.+ + ..+||+||+|+...++.+...++..++|++++.+..... . .|+.+.
T Consensus 95 ~l~~~l-~--~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~~~-------------------~-----~~~~~~ 147 (380)
T PRK13609 95 RLKLLL-Q--AEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFCLH-------------------K-----IWVHRE 147 (380)
T ss_pred HHHHHH-H--HhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCCCC-------------------c-----ccccCC
Confidence 444444 3 358999999987655555555566789988655421110 0 134678
Q ss_pred CCEEEecCHHHH
Q 008531 473 TDFIITSTFQEI 484 (562)
Q Consensus 473 AD~IIaSS~qEi 484 (562)
||.++++|....
T Consensus 148 ad~i~~~s~~~~ 159 (380)
T PRK13609 148 VDRYFVATDHVK 159 (380)
T ss_pred CCEEEECCHHHH
Confidence 999999997654
No 71
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.97 E-value=6.8e-05 Score=72.58 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=88.3
Q ss_pred hCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHH---------HHH
Q 008531 323 QQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETY---------TED 393 (562)
Q Consensus 323 ~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~f---------a~~ 393 (562)
++|| +|.-+|..... . +. +|+++++....... .....||+..| +.+
T Consensus 1 q~gh----~v~fl~~~~~~--------~---~~--~GV~~~~y~~~~~~--------~~~~~~~~~~~e~~~~rg~av~~ 55 (171)
T PF12000_consen 1 QRGH----EVVFLTERKRP--------P---IP--PGVRVVRYRPPRGP--------TPGTHPYVRDFEAAVLRGQAVAR 55 (171)
T ss_pred CCCC----EEEEEecCCCC--------C---CC--CCcEEEEeCCCCCC--------CCCCCcccccHHHHHHHHHHHHH
Confidence 4799 89999843211 1 11 37888887663321 12333443222 223
Q ss_pred HHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc-CCcEEEEecCCCcCcCCCCcchhcc-cCcccccchhH----HHHH
Q 008531 394 VAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKN-LDDKYHFSCQF----TADL 467 (562)
Q Consensus 394 ~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl-gVP~V~T~HSLe~~Ky~~s~~~w~~-~e~~y~~s~rf----~aE~ 467 (562)
+...+++ .+..||||.||---|. ++.|+..+ ++|++.-+==.+.....+.+ +.. ......-.+++ ..-.
T Consensus 56 a~~~L~~-~Gf~PDvI~~H~GWGe--~Lflkdv~P~a~li~Y~E~~y~~~g~d~~--FDpe~p~~~~~~~~~r~rN~~~l 130 (171)
T PF12000_consen 56 AARQLRA-QGFVPDVIIAHPGWGE--TLFLKDVFPDAPLIGYFEFYYRASGADVG--FDPEFPPSLDDRARLRMRNAHNL 130 (171)
T ss_pred HHHHHHH-cCCCCCEEEEcCCcch--hhhHHHhCCCCcEEEEEEEEecCCCCcCC--CCCCCCCCHHHHHHHHHHhHHHH
Confidence 4445544 3778999999973333 67888999 89988543111111111111 000 00000011111 2355
Q ss_pred HHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCcc
Q 008531 468 IAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYF 532 (562)
Q Consensus 468 ~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~ 532 (562)
..+..||..|++|.-... + .|..| .+||.||.-|||++.|+
T Consensus 131 ~~l~~~D~~isPT~wQ~~-------~--------fP~~~---------r~kI~VihdGiDt~~~r 171 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRS-------Q--------FPAEF---------RSKISVIHDGIDTDRFR 171 (171)
T ss_pred HHHHhCCcCcCCCHHHHH-------h--------CCHHH---------HcCcEEeecccchhhcC
Confidence 678999999999976554 2 25455 46999999999998774
No 72
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.75 E-value=7.1e-05 Score=76.41 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCC------CcchhcccCcccccchhH-HHHHHHHhhCCE
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPD------SDIYWKNLDDKYHFSCQF-TADLIAMNHTDF 475 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~------s~~~w~~~e~~y~~s~rf-~aE~~amn~AD~ 475 (562)
..+||+||++... .+..+.+..++|.+.+.|+....-+.. ....+......+ ....+ ..|..++++||.
T Consensus 81 ~~~~D~v~~~~~~---~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 156 (351)
T cd03804 81 LSGYDLVISSSHA---VAKGVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRL-LLHYLRIWDRRSAARVDY 156 (351)
T ss_pred ccCCCEEEEcCcH---HhccccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHH-HHHHHHHHHHHHhcCCCE
Confidence 3589999987642 222223667899999999742111100 000000000000 01111 256778999999
Q ss_pred EEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 476 IITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 476 IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
||+.|....+ .+.++ +..+..|||||+|.+.|.+..
T Consensus 157 ii~~S~~~~~----~~~~~--------------------~~~~~~vi~~~~d~~~~~~~~ 192 (351)
T cd03804 157 FIANSRFVAR----RIKKY--------------------YGRDATVIYPPVDTDRFTPAE 192 (351)
T ss_pred EEECCHHHHH----HHHHH--------------------hCCCcEEECCCCCHhhcCcCC
Confidence 9999987664 12111 123678999999999887654
No 73
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.55 E-value=0.00027 Score=81.12 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCCCEEEecC-cChHHH--HHHHHHhcCCcEEEEecCCC
Q 008531 393 DVAVEIAKELQGKPDLIIGNY-SDGNIV--ASLLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHy-wdsGlV--A~lLArklgVP~V~T~HSLe 439 (562)
++.+.|. ..+|||||.+- ...|.. |..+|++++ |+|.++||..
T Consensus 425 dI~~~L~---~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny 470 (794)
T PLN02501 425 DTSQFIP---SKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNY 470 (794)
T ss_pred HHHHHhh---ccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCc
Confidence 4555553 35899999997 466666 999999999 9999999964
No 74
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.53 E-value=0.0004 Score=72.20 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHH
Q 008531 389 TYTEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADL 467 (562)
Q Consensus 389 ~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~ 467 (562)
.....+.+.+.+ .+||+||+|. +..+++|.++|+.+|||++++.+++ .+-.... .|.+ ...| .
T Consensus 73 ~~~~~l~~~l~~---~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~--~~~~------~~~r----~ 136 (365)
T TIGR00236 73 NMLEGLEELLLE---EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYS--PMPE------EINR----Q 136 (365)
T ss_pred HHHHHHHHHHHH---cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCC--CCcc------HHHH----H
Confidence 333455555533 5899999995 7889999999999999999887765 1110000 0110 0111 1
Q ss_pred HHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCC-cc
Q 008531 468 IAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DM 528 (562)
Q Consensus 468 ~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGV-D~ 528 (562)
.+..-||.++++|....+ .+.+. | +...|+.||+||+ |.
T Consensus 137 ~~~~~ad~~~~~s~~~~~----~l~~~----------------G--~~~~~I~vign~~~d~ 176 (365)
T TIGR00236 137 LTGHIADLHFAPTEQAKD----NLLRE----------------N--VKADSIFVTGNTVIDA 176 (365)
T ss_pred HHHHHHHhccCCCHHHHH----HHHHc----------------C--CCcccEEEeCChHHHH
Confidence 223458999999976654 22222 3 2345999999997 54
No 75
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.46 E-value=0.0019 Score=66.34 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
...+.+.+.+ .+||+||+|. +...++|..+|+.+|+|++++.|++-. +.. +..|. ..+ ..+
T Consensus 77 ~~~l~~~l~~---~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s--~~~-~~~~~--------~~r----~~~ 138 (363)
T cd03786 77 LIGLEAVLLE---EKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRS--FDR-GMPDE--------ENR----HAI 138 (363)
T ss_pred HHHHHHHHHH---hCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEeccccc--CCC-CCCch--------HHH----HHH
Confidence 3445555533 4899999996 567788999999999999988876421 100 11111 011 135
Q ss_pred HhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCC-ccCCc
Q 008531 470 MNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGA-DMSIY 531 (562)
Q Consensus 470 mn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGV-D~e~F 531 (562)
.+.||.++++|....+ .+.++ | +...|+.+|+||+ |...|
T Consensus 139 ~~~ad~~~~~s~~~~~----~l~~~----------------G--~~~~kI~vign~v~d~~~~ 179 (363)
T cd03786 139 DKLSDLHFAPTEEARR----NLLQE----------------G--EPPERIFVVGNTMIDALLR 179 (363)
T ss_pred HHHhhhccCCCHHHHH----HHHHc----------------C--CCcccEEEECchHHHHHHH
Confidence 6788999999987654 22222 3 3345999999985 65443
No 76
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.35 E-value=0.0031 Score=67.17 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhH-HHHHHHHhhCCEEEecCHH
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQF-TADLIAMNHTDFIITSTFQ 482 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf-~aE~~amn~AD~IIaSS~q 482 (562)
.+||+||.|.++........+++.|+|+|.+.|.+....+ ..| .++ ...+.+++.+|.||+.|..
T Consensus 123 ~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~~~s~----~~~----------~~~~~~~r~~~~~~d~ii~~S~~ 188 (425)
T PRK05749 123 WRPKLVIIMETELWPNLIAELKRRGIPLVLANARLSERSF----KRY----------QKFKRFYRLLFKNIDLVLAQSEE 188 (425)
T ss_pred hCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCChhhH----HHH----------HHHHHHHHHHHHhCCEEEECCHH
Confidence 5899999984322222344567899999998775421111 011 111 2456789999999999987
Q ss_pred HHh
Q 008531 483 EIA 485 (562)
Q Consensus 483 Ei~ 485 (562)
..+
T Consensus 189 ~~~ 191 (425)
T PRK05749 189 DAE 191 (425)
T ss_pred HHH
Confidence 664
No 77
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.25 E-value=0.0017 Score=73.51 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=65.3
Q ss_pred CCEEEecCcChHHHHHHHHHhc--CCcEEEEecCCCcCcCC---------C-CcchhcccCcccccchhHHHHHHHHhhC
Q 008531 406 PDLIIGNYSDGNIVASLLAHKL--GVTQCTIAHALEKTKYP---------D-SDIYWKNLDDKYHFSCQFTADLIAMNHT 473 (562)
Q Consensus 406 PDLIHaHywdsGlVA~lLArkl--gVP~V~T~HSLe~~Ky~---------~-s~~~w~~~e~~y~~s~rf~aE~~amn~A 473 (562)
.=+.|.|-|++|+. .++.++. .|..|+|-|++-..+|. . ....|.+...++.+..+...|+.+...|
T Consensus 144 ~ViaHfHEWmaG~g-ll~lr~~~~~VaTvFTTHAT~lGR~l~~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~A 222 (633)
T PF05693_consen 144 KVIAHFHEWMAGVG-LLYLRKRKPDVATVFTTHATLLGRYLAANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYA 222 (633)
T ss_dssp EEEEEEESGGGTTH-HHHHHHTT-SCEEEEEESS-HHHHHHTTTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHS
T ss_pred cEEEEechHhHhHH-HHHHhccCCCeeEEEEecccchhhHhhcCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhc
Confidence 34567777999954 4444444 56689999988322221 0 1112333333345566778899999999
Q ss_pred CEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCChhh----hccCCChHHHH
Q 008531 474 DFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEK----RRLKSFHPEIE 549 (562)
Q Consensus 474 D~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~~~e----~R~~~~~~~ie 549 (562)
|+..|+|.-...+.+ ++ |. ..+=.|+|||+|.+.|.....-+ .....++.-+.
T Consensus 223 dvFTTVSeITa~Ea~----~L----------L~---------r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~ 279 (633)
T PF05693_consen 223 DVFTTVSEITAKEAE----HL----------LK---------RKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVR 279 (633)
T ss_dssp SEEEESSHHHHHHHH----HH----------HS---------S--SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeeeehhhhHHHHHH----HH----------hC---------CCCCEEcCCCccccccccchHHHHHHHHHHHHHHHHHH
Confidence 999999853332111 11 11 12237889999998765554211 22234445455
Q ss_pred HhccCC
Q 008531 550 ELLYSD 555 (562)
Q Consensus 550 ~ll~~~ 555 (562)
..+|+.
T Consensus 280 ~~f~g~ 285 (633)
T PF05693_consen 280 GHFYGH 285 (633)
T ss_dssp HHSTT-
T ss_pred HHhccc
Confidence 555554
No 78
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.13 E-value=0.0018 Score=69.09 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=64.9
Q ss_pred CCCCCEEEecC-cChHHHHHHHHHhcCCc-EEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecC
Q 008531 403 QGKPDLIIGNY-SDGNIVASLLAHKLGVT-QCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITST 480 (562)
Q Consensus 403 ~~~PDLIHaHy-wdsGlVA~lLArklgVP-~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS 480 (562)
..++|++|+|+ ...+.++..++++++.| +|.|+|+........ ....+.....+++.||.||+.|
T Consensus 125 ~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~~~~-------------~~~~~~~~~~~~~~~d~ii~~S 191 (407)
T cd04946 125 DGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYEDRY-------------PSGYIPLRRYLLSSLDAVFPCS 191 (407)
T ss_pred ccCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhhhhc-------------cccchHHHHHHHhcCCEEEECC
Confidence 45789999965 35666777889999988 999999864321100 0111122345689999999999
Q ss_pred HHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 481 FQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 481 ~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
....+. ....| +....|+.|||+|+|...|.+.
T Consensus 192 ~~~~~~---l~~~~------------------~~~~~ki~vi~~gv~~~~~~~~ 224 (407)
T cd04946 192 EQGRNY---LQKRY------------------PAYKEKIKVSYLGVSDPGIISK 224 (407)
T ss_pred HHHHHH---HHHHC------------------CCccccEEEEECCcccccccCC
Confidence 876641 11122 2224589999999999877553
No 79
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.96 E-value=0.0063 Score=56.20 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCEEEecCcChHHHHH-HHHHhcCCcEEEEecCCCc
Q 008531 404 GKPDLIIGNYSDGNIVAS-LLAHKLGVTQCTIAHALEK 440 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~-lLArklgVP~V~T~HSLe~ 440 (562)
.+||+||+|.+.+..++. ..++..++|++++.|....
T Consensus 50 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~ 87 (229)
T cd01635 50 FKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNR 87 (229)
T ss_pred cCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCccH
Confidence 589999999975555444 6778899999999998864
No 80
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.89 E-value=0.049 Score=57.70 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=59.7
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccc
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKW 377 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~ 377 (562)
-|||++.--+.++++|.+ .|| +|.++++..+-. .+ +-+..|...+.++..+..+. ..
T Consensus 10 GTGGHi~Pala~a~~l~~--------~g~----~v~~vg~~~~~e--------~~-l~~~~g~~~~~~~~~~l~~~--~~ 66 (352)
T PRK12446 10 GSAGHVTPNLAIIPYLKE--------DNW----DISYIGSHQGIE--------KT-IIEKENIPYYSISSGKLRRY--FD 66 (352)
T ss_pred CcHHHHHHHHHHHHHHHh--------CCC----EEEEEECCCccc--------cc-cCcccCCcEEEEeccCcCCC--ch
Confidence 589999777766665554 799 999998643221 01 11122566666664432100 00
Q ss_pred cCccCchHHHHHHHH---HHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEE
Q 008531 378 ISRFEVWPYLETYTE---DVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 433 (562)
Q Consensus 378 isr~~l~pyLe~fa~---~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~ 433 (562)
+. .+-.+-.+.. .+.+.+ + +.+||+||++....++-+.++|+.+++|+++
T Consensus 67 ~~---~~~~~~~~~~~~~~~~~i~-~--~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 67 LK---NIKDPFLVMKGVMDAYVRI-R--KLKPDVIFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HH---HHHHHHHHHHHHHHHHHHH-H--hcCCCEEEecCchhhHHHHHHHHHcCCCEEE
Confidence 00 0111111111 233333 2 4699999997655555568999999999865
No 81
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=96.81 E-value=0.0037 Score=65.98 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=52.4
Q ss_pred CCCCEEEecC-cChHHHHHHHHH-----hcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEE
Q 008531 404 GKPDLIIGNY-SDGNIVASLLAH-----KLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFII 477 (562)
Q Consensus 404 ~~PDLIHaHy-wdsGlVA~lLAr-----klgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~II 477 (562)
.+||+||+|+ |..++.+..+++ ..++|++++..-.. ... ..|..+.||.++
T Consensus 99 ~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~-~~~----------------------~~w~~~~~d~~~ 155 (382)
T PLN02605 99 YKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLG-TCH----------------------PTWFHKGVTRCF 155 (382)
T ss_pred cCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCC-CcC----------------------cccccCCCCEEE
Confidence 5899999976 655544444443 35899987663110 000 023467899999
Q ss_pred ecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccC
Q 008531 478 TSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 533 (562)
Q Consensus 478 aSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P 533 (562)
++|....+ .+..+ | ++..|+.|++++||.+.+.+
T Consensus 156 ~~s~~~~~----~l~~~----------------g--~~~~ki~v~g~~v~~~f~~~ 189 (382)
T PLN02605 156 CPSEEVAK----RALKR----------------G--LEPSQIRVYGLPIRPSFARA 189 (382)
T ss_pred ECCHHHHH----HHHHc----------------C--CCHHHEEEECcccCHhhccC
Confidence 99876543 12222 2 33459999999999865443
No 82
>PHA01630 putative group 1 glycosyl transferase
Probab=96.40 E-value=0.0071 Score=63.61 Aligned_cols=84 Identities=8% Similarity=-0.041 Sum_probs=55.1
Q ss_pred ecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH-HhhCCEEEecCHHHHhcccc
Q 008531 411 GNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA-MNHTDFIITSTFQEIAGSKD 489 (562)
Q Consensus 411 aHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a-mn~AD~IIaSS~qEi~~~~~ 489 (562)
.|+.-....+....++.|+|+|+|.|+.+. ... ..+... .+.||.||+.|....+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~v~e~~~~~~------------------l~~--~~~~~~~~~~ad~ii~~S~~~~~---- 107 (331)
T PHA01630 52 YYTIFNSMLFWKGIPHVGKNIVFEVADTDA------------------ISH--TALYFFRNQPVDEIVVPSQWSKN---- 107 (331)
T ss_pred ehhhhhHHHHHhhccccCCceEEEEEeech------------------hhH--HHHHHHhhccCCEEEECCHHHHH----
Confidence 454334445555667889999999998211 111 134566 7889999999987664
Q ss_pred cccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 490 TVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 490 ~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.+.+. |+.. ..|+.|||||||.+.|.|..
T Consensus 108 ~l~~~----------------g~~~-~~~i~vIpNGVd~~~f~~~~ 136 (331)
T PHA01630 108 AFYTS----------------GLKI-PQPIYVIPHNLNPRMFEYKP 136 (331)
T ss_pred HHHHc----------------CCCC-CCCEEEECCCCCHHHcCCCc
Confidence 11111 2221 24899999999999887643
No 83
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=96.37 E-value=0.0073 Score=68.78 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc--------------CCcEEEEecCCCcCc---CCC--------
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL--------------GVTQCTIAHALEKTK---YPD-------- 445 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl--------------gVP~V~T~HSLe~~K---y~~-------- 445 (562)
....++.+ +.++.+||+||+|.|.++++...+.+.+ +...|+|.|++.... +..
T Consensus 148 ~~a~l~~l-~~l~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~ 226 (601)
T TIGR02094 148 GIGGVRAL-RALGIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFG 226 (601)
T ss_pred HHHHHHHH-HHcCCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhh
Confidence 44445555 3356799999999999999888764421 366899999985322 210
Q ss_pred -----CcchhcccC---cc-cccchhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 446 -----SDIYWKNLD---DK-YHFSCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 446 -----s~~~w~~~e---~~-y~~s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
.++.|..+. .. +....++..=..++..||.|.++|+-..+-++++.+. ||.. .....
T Consensus 227 ~~~~~~gl~~~~~~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~-----------l~~~---~~~~~ 292 (601)
T TIGR02094 227 DYAANLGLPREQLLALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQF-----------LYPG---YEEEE 292 (601)
T ss_pred hhhhHhCCCHHHHHhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHh-----------hhhh---ccccc
Confidence 111111100 00 0001345445678999999999996443211111111 2110 00012
Q ss_pred CceEEecCCCccCCccCCC
Q 008531 517 PKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~P~~ 535 (562)
.|+.=|-||||..+|.|..
T Consensus 293 ~~i~gItNGId~~~W~~~~ 311 (601)
T TIGR02094 293 VPIGYVTNGVHNPTWVAPE 311 (601)
T ss_pred CCccceeCCccccccCCHH
Confidence 2688899999999998743
No 84
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=96.35 E-value=0.016 Score=60.79 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=27.5
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSL 438 (562)
..+||+|+++. ....|..+|+++|||+|.+.++.
T Consensus 102 ~~~pDlvi~d~--~~~~~~~~A~~~giP~v~~~~~~ 135 (401)
T cd03784 102 DWGPDLVVADP--LAFAGAVAAEALGIPAVRLLLGP 135 (401)
T ss_pred ccCCCEEEeCc--HHHHHHHHHHHhCCCeEEeeccc
Confidence 46899999986 33456778899999999998864
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.35 E-value=0.019 Score=59.66 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=36.7
Q ss_pred CCCCCEEEecCcCh-HHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCH
Q 008531 403 QGKPDLIIGNYSDG-NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTF 481 (562)
Q Consensus 403 ~~~PDLIHaHywds-GlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~ 481 (562)
..+||+||+|.+.+ .......+++.|||+++..|.. .|.. ...+. ....+.||.|++++.
T Consensus 83 ~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~----------~~~~------~~~~~---~~~~~~~d~i~~~~~ 143 (380)
T PRK00025 83 AEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS----------VWAW------RQGRA---FKIAKATDHVLALFP 143 (380)
T ss_pred HcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc----------hhhc------CchHH---HHHHHHHhhheeCCc
Confidence 36899999986432 2222234566799998764421 1211 01111 124778999999887
Q ss_pred HHH
Q 008531 482 QEI 484 (562)
Q Consensus 482 qEi 484 (562)
.+.
T Consensus 144 ~~~ 146 (380)
T PRK00025 144 FEA 146 (380)
T ss_pred cCH
Confidence 554
No 86
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.30 E-value=0.015 Score=64.63 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCc--chhcccCcccccchhHHHHHHHHhhCCEEEecC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSD--IYWKNLDDKYHFSCQFTADLIAMNHTDFIITST 480 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~--~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS 480 (562)
..++||||++..+....+ .+..+.++|.|.+.|+.........+ ..|.. .+.--...++.+|.||++|
T Consensus 209 ~~~~di~i~dr~~~~~~~-~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~---------~y~~~~~~~~~~D~iI~~S 278 (500)
T TIGR02918 209 LTKKDIIILDRSTGIGQA-VLENKGPAKLGVVVHAEHFSESATNETYILWNN---------YYEYQFSNADYIDFFITAT 278 (500)
T ss_pred CCCCCEEEEcCCcccchH-HHhcCCCceEEEEEChhhhcCccCcchhHHHHH---------HHHHHHhchhhCCEEEECC
Confidence 358999999875433333 45667799999999985432211111 11211 1111123467899999999
Q ss_pred HHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccC
Q 008531 481 FQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFP 533 (562)
Q Consensus 481 ~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P 533 (562)
....+ +...++..+ ....+|+.+||+|++.+.+.|
T Consensus 279 ~~~~~---~l~~~~~~~---------------~~~~~ki~viP~g~~~~~~~~ 313 (500)
T TIGR02918 279 DIQNQ---ILKNQFKKY---------------YNIEPRIYTIPVGSLDELQYP 313 (500)
T ss_pred HHHHH---HHHHHhhhh---------------cCCCCcEEEEcCCCcccccCc
Confidence 76543 122333221 122468999999998766655
No 87
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=96.25 E-value=0.017 Score=50.66 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHH--HHHHHHHhcCCcEEEE
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNI--VASLLAHKLGVTQCTI 434 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGl--VA~lLArklgVP~V~T 434 (562)
+.|..|+.+|..+.- .....|-+-... .+.+.|.- ..+.||||+|.+.|.+ =|.+-|+.+|+..|+|
T Consensus 13 tngLKVYYlP~~~~~--------~~~t~Pt~~~~~-pl~R~Ili--rE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfT 81 (90)
T PF08288_consen 13 TNGLKVYYLPLKVFY--------NQCTLPTLFGSF-PLLRNILI--RERIDIVHGHQAFSTLCHEAILHARTMGLKTVFT 81 (90)
T ss_pred CCCeEEEeecchhhh--------cCcchHHHHHhh-HHHHHHHH--HcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEee
Confidence 348999999998741 123344332211 13333322 2478999999865555 5778899999999999
Q ss_pred ecCCC
Q 008531 435 AHALE 439 (562)
Q Consensus 435 ~HSLe 439 (562)
=|||.
T Consensus 82 DHSLf 86 (90)
T PF08288_consen 82 DHSLF 86 (90)
T ss_pred ccccc
Confidence 99973
No 88
>PLN02949 transferase, transferring glycosyl groups
Probab=96.24 E-value=0.1 Score=57.55 Aligned_cols=201 Identities=17% Similarity=0.203 Sum_probs=97.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
.+|+++-|.- + .-||-..-+++.+++|.+ .|+++ .|.|+|...+.. ..+.++++..
T Consensus 34 ~~v~f~HP~~--~--------~ggG~ERvl~~a~~~l~~--------~~~~~--~v~iyt~~~d~~----~~~~l~~~~~ 89 (463)
T PLN02949 34 RAVGFFHPYT--N--------DGGGGERVLWCAVRAIQE--------ENPDL--DCVIYTGDHDAS----PDSLAARARD 89 (463)
T ss_pred cEEEEECCCC--C--------CCCChhhHHHHHHHHHHh--------hCCCC--eEEEEcCCCCCC----HHHHHHHHHh
Confidence 4777764432 1 446889999999999987 68854 788888654321 1111111211
Q ss_pred CCCcEEEEecCCCCCcc-c--ccccCccCchHHHHHHHH---HHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCc
Q 008531 357 TKYSDILRVPFRTEKGV-V--RKWISRFEVWPYLETYTE---DVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVT 430 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~-~--~~~isr~~l~pyLe~fa~---~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP 430 (562)
+=++.+ +... ..+ + +.|+++ ..||++--+.+ .+.-.+.......||++.=. .|-.....+++..++|
T Consensus 90 ~~~i~~---~~~~-~~v~l~~~~~~~~-~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt--~~~~~~~pl~~~~~~~ 162 (463)
T PLN02949 90 RFGVEL---LSPP-KVVHLRKRKWIEE-ETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDT--SGYAFTYPLARLFGCK 162 (463)
T ss_pred hcceec---CCCc-eEEEecccccccc-ccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeC--CCcccHHHHHHhcCCc
Confidence 112322 1111 011 1 256643 44554222222 22222211112356655422 2211233444555999
Q ss_pred EEEEecCCCcC------------cCCCCc----chhcccCcccccchhHH-HHHHHHhhCCEEEecCHHHHhcccccccc
Q 008531 431 QCTIAHALEKT------------KYPDSD----IYWKNLDDKYHFSCQFT-ADLIAMNHTDFIITSTFQEIAGSKDTVGQ 493 (562)
Q Consensus 431 ~V~T~HSLe~~------------Ky~~s~----~~w~~~e~~y~~s~rf~-aE~~amn~AD~IIaSS~qEi~~~~~~l~q 493 (562)
+++..|--... .|...+ ..|...- +.-+...+. .+.++++.||.||++|....+ .+.+
T Consensus 163 v~~yvH~p~~~~dm~~~v~~~~~~~~~~~~~a~~~~~~~~-k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~----~l~~ 237 (463)
T PLN02949 163 VVCYTHYPTISSDMISRVRDRSSMYNNDASIARSFWLSTC-KILYYRAFAWMYGLVGRCAHLAMVNSSWTKS----HIEA 237 (463)
T ss_pred EEEEEeCCcchHHHHHHHhhcccccCccchhhccchhHHH-HHHHHHHHHHHHHHHcCCCCEEEECCHHHHH----HHHH
Confidence 99999933211 010000 0000000 000111121 567788999999999876543 2222
Q ss_pred cccccccccCCceeeecccccCCCceEEecCCCccCCc
Q 008531 494 YESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIY 531 (562)
Q Consensus 494 yes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F 531 (562)
+ + . ...++.||+||+|.+.|
T Consensus 238 ~-----------~------~-~~~~i~vvyp~vd~~~~ 257 (463)
T PLN02949 238 L-----------W------R-IPERIKRVYPPCDTSGL 257 (463)
T ss_pred H-----------c------C-CCCCeEEEcCCCCHHHc
Confidence 2 1 1 12478999999998766
No 89
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=96.18 E-value=0.034 Score=57.20 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=57.8
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCC-cchhcccCcccccchhHHHHHHHHhhCCEEEecCHH
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDS-DIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQ 482 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s-~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~q 482 (562)
.++|+||+|......+ ..+......+.|.+.|+......... ...|+ .........++.+|.||++|..
T Consensus 98 ~~~diii~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~d~ii~~s~~ 167 (372)
T cd04949 98 TKPDVFILDRPTLDGQ-ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLIN---------NFYEYVFENLDKVDGVIVATEQ 167 (372)
T ss_pred CCCCEEEECCccccch-hHHhccCCceEEEEEChHHhCCcccccccccc---------hhhHHHHhChhhCCEEEEccHH
Confidence 6899999997533333 23444556678888886532221100 01111 1111122347899999999987
Q ss_pred HHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 483 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 483 Ei~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
..+ +...++. ...++.+||+|+|.+.+.+.
T Consensus 168 ~~~---~l~~~~~-------------------~~~~v~~ip~g~~~~~~~~~ 197 (372)
T cd04949 168 QKQ---DLQKQFG-------------------NYNPIYTIPVGSIDPLKLPA 197 (372)
T ss_pred HHH---HHHHHhC-------------------CCCceEEEcccccChhhccc
Confidence 654 1222221 12369999999999888774
No 90
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.52 E-value=0.44 Score=50.21 Aligned_cols=92 Identities=10% Similarity=0.011 Sum_probs=54.9
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHH
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQ 482 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~q 482 (562)
+.+.+++.++.-... ..++...+.++|+.+|-.- .... + + .......|..+++.||.|||+|..
T Consensus 100 ~~~~~i~~~~~P~~~---~~~~~~~~~~~Vyd~~D~~-~~~~--~--~--------~~~~~~~e~~~~~~ad~vi~~S~~ 163 (373)
T cd04950 100 GFGRPILWYYTPYTL---PVAALLQASLVVYDCVDDL-SAFP--G--G--------PPELLEAERRLLKRADLVFTTSPS 163 (373)
T ss_pred CCCCcEEEEeCccHH---HHHhhcCCCeEEEEcccch-hccC--C--C--------CHHHHHHHHHHHHhCCEEEECCHH
Confidence 556666666532222 2233356777877765311 1110 0 0 011125688999999999999876
Q ss_pred HHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 483 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 483 Ei~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
-.+ .+.. ..+|+.+||||||.+.|.+..
T Consensus 164 l~~-------~~~~------------------~~~~i~~i~ngvd~~~f~~~~ 191 (373)
T cd04950 164 LYE-------AKRR------------------LNPNVVLVPNGVDYEHFAAAR 191 (373)
T ss_pred HHH-------HHhh------------------CCCCEEEcccccCHHHhhccc
Confidence 543 1211 126899999999999997754
No 91
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.49 E-value=0.11 Score=54.11 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=43.5
Q ss_pred CCC-CEEEecCc-ChH--HHHHH--HHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEE
Q 008531 404 GKP-DLIIGNYS-DGN--IVASL--LAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFII 477 (562)
Q Consensus 404 ~~P-DLIHaHyw-dsG--lVA~l--LArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~II 477 (562)
.++ |+||.||- ..+ +.+.. ..++.|+|+|.++|.+........ ..+ ...|...++.||.||
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~----------~~~---~~~~~~~~~~aD~iI 128 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSN----------YYL---MKEEIDMLNLADVLI 128 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcccc----------chh---hHHHHHHHHhCCEEE
Confidence 466 99999982 222 22222 223458999999998653221000 001 234788999999999
Q ss_pred ecCHHHHh
Q 008531 478 TSTFQEIA 485 (562)
Q Consensus 478 aSS~qEi~ 485 (562)
+.|....+
T Consensus 129 ~~S~~~~~ 136 (333)
T PRK09814 129 VHSKKMKD 136 (333)
T ss_pred ECCHHHHH
Confidence 99987664
No 92
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=95.18 E-value=0.073 Score=55.03 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=26.3
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
..+||+|++.+.. ++.++|+.+|||.+.+.|.
T Consensus 91 ~~~pDlVi~d~~~---~~~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 91 EYNPDLIISDFEY---STVVAAKLLKIPVICISNQ 122 (321)
T ss_pred hcCCCEEEECCch---HHHHHHHhcCCCEEEEecc
Confidence 4689999997554 5577889999999988884
No 93
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.73 E-value=0.15 Score=51.75 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=27.7
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKT 441 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~ 441 (562)
..+||+|.+-+.+ .+..+++..|||.+...|-....
T Consensus 92 ~~~pDlVIsD~~~---~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 92 EFRPDLVISDFYP---LAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred hcCCCEEEEcChH---HHHHHHHhcCCCEEEEEehHHcc
Confidence 4589999997544 35678899999999888865443
No 94
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=94.70 E-value=0.078 Score=62.25 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCEEEecCcChHHHHH-----HHHHh-c---------CCcEEEEecCCCcCc---CCC---------
Q 008531 393 DVAVEIAKELQGKPDLIIGNYSDGNIVAS-----LLAHK-L---------GVTQCTIAHALEKTK---YPD--------- 445 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHywdsGlVA~-----lLArk-l---------gVP~V~T~HSLe~~K---y~~--------- 445 (562)
...+.+ +.++.+||+||+|.|.++++.. ++... + +...|+|.|+..... ++.
T Consensus 237 agl~~L-r~lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~ 315 (778)
T cd04299 237 GGVRAL-RALGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGP 315 (778)
T ss_pred HHHHHH-HHhCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhH
Confidence 334444 3356799999999999999998 55432 1 356899999985322 110
Q ss_pred ----CcchhcccCcc-ccc----chhHHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCC
Q 008531 446 ----SDIYWKNLDDK-YHF----SCQFTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 516 (562)
Q Consensus 446 ----s~~~w~~~e~~-y~~----s~rf~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~d 516 (562)
.+..|+.+... ..+ ..+|..=..+++.||.|-++|+-.-.=++++.. ++|. |.....
T Consensus 316 ~~~~lgl~~~~~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~-----------~~~~---g~p~~~ 381 (778)
T cd04299 316 YARELGLSRDRFLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFA-----------GLWP---GFPVEE 381 (778)
T ss_pred HHHHcCCCHHHHhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhh-----------hhhc---cCCccc
Confidence 11222111000 001 134544567899999999999643210122222 1221 222212
Q ss_pred CceEEecCCCccCCcc
Q 008531 517 PKFNIVSPGADMSIYF 532 (562)
Q Consensus 517 pKi~VIPpGVD~e~F~ 532 (562)
.+|.=|-||||...|-
T Consensus 382 ~~i~~ITNGVh~~~W~ 397 (778)
T cd04299 382 VPIGHVTNGVHVPTWV 397 (778)
T ss_pred CceeceeCCcchhhhc
Confidence 3799999999999888
No 95
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=94.55 E-value=0.1 Score=55.55 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhh
Q 008531 393 DVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNH 472 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~ 472 (562)
.+.+.+. +.+||+||+++...++.+...++.++||+++ .++- ... ++ .|+.+.
T Consensus 95 ~l~~~l~---~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~-v~td-~~~--~~--------------------~w~~~~ 147 (391)
T PRK13608 95 KLINLLI---KEKPDLILLTFPTPVMSVLTEQFNINIPVAT-VMTD-YRL--HK--------------------NWITPY 147 (391)
T ss_pred HHHHHHH---HhCcCEEEECCcHHHHHHHHHhcCCCCCEEE-EeCC-CCc--cc--------------------ccccCC
Confidence 4555553 3599999997654443333334567999853 4431 111 00 123567
Q ss_pred CCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccC
Q 008531 473 TDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMS 529 (562)
Q Consensus 473 AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e 529 (562)
+|.++++|....+ .+..+ |+ ...|+.|+++.|+..
T Consensus 148 ~d~~~v~s~~~~~-------~l~~~-------------gi--~~~ki~v~GiPv~~~ 182 (391)
T PRK13608 148 STRYYVATKETKQ-------DFIDV-------------GI--DPSTVKVTGIPIDNK 182 (391)
T ss_pred CCEEEECCHHHHH-------HHHHc-------------CC--CHHHEEEECeecChH
Confidence 9999999976654 12111 33 234888887777643
No 96
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=94.16 E-value=0.3 Score=52.34 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCcCh-HHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYSDG-NIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHywds-GlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
...+.+.++ ..+||+|+++...+ ++.....|+.+|||+++-. +-+ -+.|+. .+ =+..
T Consensus 78 ~~~~~~~l~---~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~-------~waw~~--------~~---~r~l 135 (385)
T TIGR00215 78 RKEVVQLAK---QAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQ-------VWAWRK--------WR---AKKI 135 (385)
T ss_pred HHHHHHHHH---hcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCc-------HhhcCc--------ch---HHHH
Confidence 334555553 35899999997533 5555567888999998433 211 122321 11 1345
Q ss_pred HhhCCEEEecCHHHHh
Q 008531 470 MNHTDFIITSTFQEIA 485 (562)
Q Consensus 470 mn~AD~IIaSS~qEi~ 485 (562)
.+.||.|++++..|.+
T Consensus 136 ~~~~d~v~~~~~~e~~ 151 (385)
T TIGR00215 136 EKATDFLLAILPFEKA 151 (385)
T ss_pred HHHHhHhhccCCCcHH
Confidence 7789999999887654
No 97
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=92.93 E-value=0.75 Score=48.57 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCc-cccccc
Q 008531 300 GGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKG-VVRKWI 378 (562)
Q Consensus 300 GGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~-~~~~~i 378 (562)
-|.+--.+.+|++|.+ +|| +|.++|...- ....+. .|+..+-+|...... ..+. .
T Consensus 6 ~Ghv~P~l~lA~~L~~--------~Gh----~V~~~~~~~~-------~~~v~~----~G~~~~~~~~~~~~~~~~~~-~ 61 (392)
T TIGR01426 6 HGHVNPTLGVVEELVA--------RGH----RVTYATTEEF-------AERVEA----AGAEFVLYGSALPPPDNPPE-N 61 (392)
T ss_pred cccccccHHHHHHHHh--------CCC----eEEEEeCHHH-------HHHHHH----cCCEEEecCCcCcccccccc-c
Confidence 4666677777777776 899 9999986321 112221 245554444322110 0000 0
Q ss_pred CccCchHHHHHHHHH---HHHHHHHH-cCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 379 SRFEVWPYLETYTED---VAVEIAKE-LQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 379 sr~~l~pyLe~fa~~---~~~~i~~~-~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
...+++..+..|... ....+.+. ...+||+|.+++.. ..|..+|+++|||+|.+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~--~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 62 TEEEPIDIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIAS--WTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcc--HHHHHHHHHhCCCEEEEehh
Confidence 001223333333222 22222211 23589999998742 35788899999999877643
No 98
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.63 E-value=0.39 Score=52.79 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=58.9
Q ss_pred CCCEEEecCcChHHHHHHHHHh-cCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHH
Q 008531 405 KPDLIIGNYSDGNIVASLLAHK-LGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 483 (562)
Q Consensus 405 ~PDLIHaHywdsGlVA~lLArk-lgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qE 483 (562)
.-|+||.|+..-.+++..+.++ .+.|+++..|.-- +.+. .|.-+ +++- .-...|-.||.|.-.|..-
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~Hipf----P~~e-~~~~l------p~~~-~ll~~~l~~D~igF~t~~~ 198 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPF----PSSE-IFRCL------PWRE-ELLRGLLGADLIGFQTERY 198 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCC----CChH-HHhhC------CChH-HHHHHHhcCCEEEECCHHH
Confidence 5699999986555566666554 4689999999742 1111 22211 1221 1123566799998888543
Q ss_pred Hhcccccccccccccc--cccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 484 IAGSKDTVGQYESHTA--FTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 484 i~~~~~~l~qyes~~~--ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
... -+........ .+.-...+. .| ...++.|||+|||++.|.+.
T Consensus 199 ~~~---Fl~~~~~~l~~~~~~~~~i~~-~g---~~~~i~vip~GID~~~f~~~ 244 (460)
T cd03788 199 ARN---FLSCCSRLLGLEVTDDGGVEY-GG---RRVRVGAFPIGIDPDAFRKL 244 (460)
T ss_pred HHH---HHHHHHHHcCCcccCCceEEE-CC---EEEEEEEEeCeEcHHHHHHH
Confidence 321 0000000000 000000000 11 12389999999999999864
No 99
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=92.38 E-value=0.13 Score=53.01 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=49.0
Q ss_pred CCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCc-CcCCC-Ccchhc--ccCcccccchhH--HHHHHHHhhCCEEE
Q 008531 405 KPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEK-TKYPD-SDIYWK--NLDDKYHFSCQF--TADLIAMNHTDFII 477 (562)
Q Consensus 405 ~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~-~Ky~~-s~~~w~--~~e~~y~~s~rf--~aE~~amn~AD~II 477 (562)
+.||.|+..+ .+|++|+.++.+.|+|++.|-||... .++.. ....|- ...-+ .+..+| ..=+.+..+||.|+
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r-~~wi~~f~~l~~~~Y~~Ad~I~ 250 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVR-DLWIRFFESLSRLAYRAADRIT 250 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHH-HHHHHHHHHHHHHHHHhhCeec
Confidence 5699999986 89999999999999999999999851 11110 011121 00000 011222 12344689999999
Q ss_pred ecCHH
Q 008531 478 TSTFQ 482 (562)
Q Consensus 478 aSS~q 482 (562)
+.+..
T Consensus 251 ~l~~~ 255 (268)
T PF11997_consen 251 PLYEY 255 (268)
T ss_pred ccchh
Confidence 97754
No 100
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=90.76 E-value=2.5 Score=45.54 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccc
Q 008531 298 DTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKW 377 (562)
Q Consensus 298 DtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~ 377 (562)
-|||++.-.+-++.+|. ++|++ +|.++... +. ..+.+....+..++-|+.+... ..
T Consensus 9 GTGGHv~pAlAl~~~l~--------~~g~~---~v~~~~~~--~~-------~e~~l~~~~~~~~~~I~~~~~~----~~ 64 (357)
T COG0707 9 GTGGHVFPALALAEELA--------KRGWE---QVIVLGTG--DG-------LEAFLVKQYGIEFELIPSGGLR----RK 64 (357)
T ss_pred CCccchhHHHHHHHHHH--------hhCcc---EEEEeccc--cc-------ceeeeccccCceEEEEeccccc----cc
Confidence 58999866665555554 48992 35555221 11 1122333347888888887642 11
Q ss_pred cCccCch-H-HHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 378 ISRFEVW-P-YLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 378 isr~~l~-p-yLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
.+...++ | ++.....++.+.+ + ..+||+|.+-......-+..+|..+|+|+++.-
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~il-~--~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE 121 (357)
T COG0707 65 GSLKLLKAPFKLLKGVLQARKIL-K--KLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE 121 (357)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-H--HcCCCEEEecCCccccHHHHHHHhCCCCEEEEe
Confidence 1111111 0 1122222333344 3 369999999655444456677888999998644
No 101
>PLN02448 UDP-glycosyltransferase family protein
Probab=90.61 E-value=3.7 Score=45.29 Aligned_cols=118 Identities=9% Similarity=0.040 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCCeEEEEecCCCCCCCCcccccceee
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQ--GLDITPQILIITRLLPDAVGTTCGQRLEKV 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~--Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i 354 (562)
.+|+++++- +-|++.=.+++|+.|.. . || .|.++|..... ..++..
T Consensus 11 ~hVvlvp~p-------------a~GHi~P~l~LA~~L~~--------~~~G~----~VT~~~t~~~~-------~~i~~~ 58 (459)
T PLN02448 11 CHVVAMPYP-------------GRGHINPMMNLCKLLAS--------RKPDI----LITFVVTEEWL-------GLIGSD 58 (459)
T ss_pred cEEEEECCc-------------ccccHHHHHHHHHHHHc--------CCCCc----EEEEEeCCchH-------hHhhcc
Confidence 489998742 34788888988888876 7 99 89999864211 112211
Q ss_pred cCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHH---HHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcE
Q 008531 355 YGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE---DVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQ 431 (562)
Q Consensus 355 ~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~---~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~ 431 (562)
....+++++-+|.+...+. -+..+++.++..+.. ...+.+.+....++|.|.++...+ .|..+|+++|||.
T Consensus 59 ~~~~gi~fv~lp~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~--wa~~vA~~lgIP~ 132 (459)
T PLN02448 59 PKPDNIRFATIPNVIPSEL----VRAADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLF--WAVGVGNRRNIPV 132 (459)
T ss_pred CCCCCEEEEECCCCCCCcc----ccccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccH--HHHHHHHHhCCCe
Confidence 1113688888876321111 011234444443321 222233232223579999876543 6888999999996
Q ss_pred E
Q 008531 432 C 432 (562)
Q Consensus 432 V 432 (562)
+
T Consensus 133 v 133 (459)
T PLN02448 133 A 133 (459)
T ss_pred E
Confidence 5
No 102
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=90.33 E-value=2.6 Score=45.18 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
+.+||++.++.+. .|.++|.-+|+|.|+-..+
T Consensus 81 ~~~pDv~is~~s~---~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 81 KFKPDVAISFGSP---EAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred hhCCCEEEecCcH---HHHHHHHHhCCCeEEEecC
Confidence 4689999997653 5677788899999987764
No 103
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.43 E-value=2.3 Score=47.04 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc-CCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl-gVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
.+.+.+.+.+. -..-|+|..|...--+++..|.++. ..++.+..|.- .+.++ .|.-+. .... =...
T Consensus 114 N~~fA~~i~~~-~~~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHip----fP~~e-~f~~lp----~r~~---il~g 180 (456)
T TIGR02400 114 NRLFAEALAPL-LQPGDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIP----FPSSE-IYRTLP----WRRE---LLEG 180 (456)
T ss_pred HHHHHHHHHHh-CCCCCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCC----CCChH-HHhhCC----cHHH---HHHH
Confidence 33444444332 1234999999877777888887775 46788888852 11122 222111 1111 2347
Q ss_pred HhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 470 MNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 470 mn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
|-.||.|.-.|+.....--....+.-. .-+.++-.. ..| -..++.++|+|||++.|.|.
T Consensus 181 ll~~dligF~t~~~~~~Fl~~~~~~l~--~~~~~~~~~-~~g---~~~~v~viP~GID~~~f~~~ 239 (456)
T TIGR02400 181 LLAYDLVGFQTYDDARNFLSAVSRELG--LETLPNGVE-SGG---RTVRVGAFPIGIDVDRFAEQ 239 (456)
T ss_pred HhcCCEEEECCHHHHHHHHHHHHHHhC--CcccCCceE-ECC---cEEEEEEecCcCCHHHHHHH
Confidence 999999999998766521111110000 000000000 011 12389999999999999864
No 104
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=85.26 E-value=1.4 Score=39.21 Aligned_cols=111 Identities=20% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCC-CCCcccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFR-TEKGVVRKW 377 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~-~~~~~~~~~ 377 (562)
++|.+.=.+-++++|.+ +|| +|.+.|... . .... ...|...+.++.. ... +..
T Consensus 8 t~Ghv~P~lala~~L~~--------rGh----~V~~~~~~~--~-----~~~v----~~~Gl~~~~~~~~~~~~---~~~ 61 (139)
T PF03033_consen 8 TRGHVYPFLALARALRR--------RGH----EVRLATPPD--F-----RERV----EAAGLEFVPIPGDSRLP---RSL 61 (139)
T ss_dssp SHHHHHHHHHHHHHHHH--------TT-----EEEEEETGG--G-----HHHH----HHTT-EEEESSSCGGGG---HHH
T ss_pred ChhHHHHHHHHHHHHhc--------cCC----eEEEeeccc--c-----eecc----cccCceEEEecCCcCcC---ccc
Confidence 67888777767777766 899 999998531 1 0111 1236777766665 211 000
Q ss_pred cCccCchHHHH--HHHHHHHHHHHHHc-------C--CCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 378 ISRFEVWPYLE--TYTEDVAVEIAKEL-------Q--GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 378 isr~~l~pyLe--~fa~~~~~~i~~~~-------~--~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
-+...+..... .....+.+.+.+.. . ..+|+|-++- ...++..++++++||.+.+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~vaE~~~iP~~~~~~~ 130 (139)
T PF03033_consen 62 EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAP--LAFAAALVAEQLGIPGVANRLF 130 (139)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHH--HHTHHHHHHHHHTS-EEEEESS
T ss_pred chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhh--hcCccceeEhhhCchHHHHhhC
Confidence 00001111111 12222333332211 1 2467776553 4447889999999999988764
No 105
>PLN02208 glycosyltransferase family protein
Probab=83.84 E-value=18 Score=40.10 Aligned_cols=118 Identities=12% Similarity=0.159 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
.+|+++.+- .-|++.-.+++|+.|+. +|+ .|.++|..... ..++....
T Consensus 5 ~hvv~~P~p-------------aqGHi~P~l~LAk~La~--------~G~----~VT~vtt~~~~-------~~i~~~~a 52 (442)
T PLN02208 5 FHAFMFPWF-------------AFGHMIPFLHLANKLAE--------KGH----RVTFLLPKKAQ-------KQLEHHNL 52 (442)
T ss_pred CEEEEecCc-------------cccHHHHHHHHHHHHHh--------CCC----EEEEEeccchh-------hhhhcccC
Confidence 478888742 35888899999999886 799 99999943211 11211110
Q ss_pred -CCCcEEEEecCCCCCcccccccCccCchHHH--------HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc
Q 008531 357 -TKYSDILRVPFRTEKGVVRKWISRFEVWPYL--------ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL 427 (562)
Q Consensus 357 -~~gv~I~RVP~~~~~~~~~~~isr~~l~pyL--------e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl 427 (562)
..++++.-+|+.+.++.....-+..++..++ +.+...+.+.+ + +.+||.|.+-+ . ..+..+|+++
T Consensus 53 ~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L-~--~~~~~cVV~D~--~-~wa~~vA~e~ 126 (442)
T PLN02208 53 FPDSIVFHPLTIPPVNGLPAGAETTSDIPISMDNLLSEALDLTRDQVEAAV-R--ALRPDLIFFDF--A-QWIPEMAKEH 126 (442)
T ss_pred CCCceEEEEeCCCCccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHH-h--hCCCeEEEECC--c-HhHHHHHHHh
Confidence 1245566665542222211110111222222 22222333333 2 34789999873 2 3678899999
Q ss_pred CCcEE
Q 008531 428 GVTQC 432 (562)
Q Consensus 428 gVP~V 432 (562)
|||.+
T Consensus 127 giP~~ 131 (442)
T PLN02208 127 MIKSV 131 (442)
T ss_pred CCCEE
Confidence 99965
No 106
>PLN00414 glycosyltransferase family protein
Probab=83.38 E-value=23 Score=39.30 Aligned_cols=124 Identities=11% Similarity=0.143 Sum_probs=65.9
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeec
Q 008531 276 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY 355 (562)
Q Consensus 276 ~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~ 355 (562)
..+|+|+.+ -.-|++.-.+++|+.|.. +|+ .|.++|..... ..++...
T Consensus 4 ~~HVvlvPf-------------paqGHi~PmL~LAk~Las--------~G~----~VT~vtt~~~~-------~~i~~~~ 51 (446)
T PLN00414 4 KFHAFMYPW-------------FGFGHMIPYLHLANKLAE--------KGH----RVTFFLPKKAH-------KQLQPLN 51 (446)
T ss_pred CCEEEEecC-------------cccchHHHHHHHHHHHHh--------CCC----EEEEEeCCchh-------hhhcccc
Confidence 347888863 234888899989988886 899 89999853211 1121111
Q ss_pred -CCCCcEEEEecCCCCCcccccccCccCchHH----H----HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHh
Q 008531 356 -GTKYSDILRVPFRTEKGVVRKWISRFEVWPY----L----ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK 426 (562)
Q Consensus 356 -~~~gv~I~RVP~~~~~~~~~~~isr~~l~py----L----e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArk 426 (562)
..+++++..+|+...+|.....-...++.++ + ..+...+.+.+ + +.+||.|.+-+ -..+.-+|++
T Consensus 52 ~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L-~--~~~p~cVV~D~---~~wa~~vA~~ 125 (446)
T PLN00414 52 LFPDSIVFEPLTLPPVDGLPFGAETASDLPNSTKKPIFDAMDLLRDQIEAKV-R--ALKPDLIFFDF---VHWVPEMAKE 125 (446)
T ss_pred cCCCceEEEEecCCCcCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH-h--cCCCeEEEECC---chhHHHHHHH
Confidence 0123566555543222222111011122111 1 12222222222 2 34789888853 2378889999
Q ss_pred cCCcEEEEecCC
Q 008531 427 LGVTQCTIAHAL 438 (562)
Q Consensus 427 lgVP~V~T~HSL 438 (562)
+|||.+ .+++.
T Consensus 126 lgIP~~-~F~~~ 136 (446)
T PLN00414 126 FGIKSV-NYQII 136 (446)
T ss_pred hCCCEE-EEecH
Confidence 999944 44443
No 107
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=81.00 E-value=1.1 Score=49.81 Aligned_cols=106 Identities=11% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCCEEEecC--cChHHHHHHHHHhcCCc--EEEEecCCCcCcCCC-------CcchhcccC---cccccchhHHHHHHHH
Q 008531 405 KPDLIIGNY--SDGNIVASLLAHKLGVT--QCTIAHALEKTKYPD-------SDIYWKNLD---DKYHFSCQFTADLIAM 470 (562)
Q Consensus 405 ~PDLIHaHy--wdsGlVA~lLArklgVP--~V~T~HSLe~~Ky~~-------s~~~w~~~e---~~y~~s~rf~aE~~am 470 (562)
.+-.|.||+ |.+| ||+.+.|+..+| .|+|-|++--.+|.- +++.--+.+ .+..+-.|...|+.+.
T Consensus 172 ~~~~vVahFHEW~AG-VgL~l~R~rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EAGkr~IYHrYC~ERaa~ 250 (692)
T KOG3742|consen 172 SYTAVVAHFHEWQAG-VGLILCRARRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEAGKRQIYHRYCLERAAA 250 (692)
T ss_pred cchHHHHHHHHHHhc-cchheehhcccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhhccchhHHHHHHHHHhh
Confidence 343566665 9988 788888877776 566778764333321 111000111 1112223556899999
Q ss_pred hhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 471 NHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 471 n~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
..|+...|+|.-..-+. +.+ |. ..+=.|.|||.|...|...
T Consensus 251 h~AhVFTTVSeITa~EA----eHl----------Lk---------RKPD~itPNGLNV~KFsA~ 291 (692)
T KOG3742|consen 251 HTAHVFTTVSEITALEA----EHL----------LK---------RKPDVITPNGLNVKKFSAV 291 (692)
T ss_pred hhhhhhhhHHHHHHHHH----HHH----------Hh---------cCCCeeCCCCcceeehhHH
Confidence 99998888764222100 011 22 1233678999999998653
No 108
>PLN02554 UDP-glycosyltransferase family protein
Probab=78.71 E-value=32 Score=38.40 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=67.7
Q ss_pred ccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEecCCCCCCCCcccccce
Q 008531 275 MVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQG--LDITPQILIITRLLPDAVGTTCGQRLE 352 (562)
Q Consensus 275 m~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~G--h~~~~~V~V~TR~~~~~~gt~~~q~~E 352 (562)
|.++|+++.+- .-|++.=.+++|+.|+. +| . .|.++|.......-........
T Consensus 1 ~~~hvvl~P~p-------------aqGHi~P~l~LAk~La~--------~G~~~----~vT~v~t~~~~~~~~~~~~~~~ 55 (481)
T PLN02554 1 MKIELVFIPSP-------------GIGHLRPTVELAKLLVD--------SDDRL----SITVIIIPSRSGDDASSSAYIA 55 (481)
T ss_pred CceEEEEeCCc-------------chhhHHHHHHHHHHHHh--------CCCCE----EEEEEeCCCccchhhhhhhhhh
Confidence 67899999742 24788899999999886 77 5 7888865321110000000011
Q ss_pred eec--CCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHc------CCCC-CEEEecCcChHHHHHHH
Q 008531 353 KVY--GTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKEL------QGKP-DLIIGNYSDGNIVASLL 423 (562)
Q Consensus 353 ~i~--~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~------~~~P-DLIHaHywdsGlVA~lL 423 (562)
... ..++++++-+|.+...+ ... ..++.++..+...+.+.+.+.. ..+| +.|.+-... ..|.-+
T Consensus 56 ~~~~~~~~~i~~~~lp~~~~~~---~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~--~wa~dv 128 (481)
T PLN02554 56 SLSASSEDRLRYEVISAGDQPT---TED--PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFC--TSMIDV 128 (481)
T ss_pred hcccCCCCCeEEEEcCCCCCCc---ccc--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcc--hhHHHH
Confidence 111 01258888888764311 001 1344444444444443332211 1234 556665432 268889
Q ss_pred HHhcCCcEE
Q 008531 424 AHKLGVTQC 432 (562)
Q Consensus 424 ArklgVP~V 432 (562)
|+++|||.+
T Consensus 129 A~~lgIP~~ 137 (481)
T PLN02554 129 ANEFGVPSY 137 (481)
T ss_pred HHHhCCCEE
Confidence 999999954
No 109
>PLN03007 UDP-glucosyltransferase family protein
Probab=77.75 E-value=36 Score=37.91 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 338 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~ 338 (562)
.+|+++++- .-|++.-.+++|+.|.. +|+ +|.++|..
T Consensus 6 ~hVvlvp~p-------------a~GHi~P~L~LAk~L~~--------rG~----~VT~vtt~ 42 (482)
T PLN03007 6 LHILFFPFM-------------AHGHMIPTLDMAKLFSS--------RGA----KSTILTTP 42 (482)
T ss_pred cEEEEECCC-------------ccccHHHHHHHHHHHHh--------CCC----EEEEEECC
Confidence 489999853 24888899988888886 899 89999864
No 110
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=74.73 E-value=31 Score=34.26 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPD 341 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~ 341 (562)
|||++....|+.+ ..+..|+++|.+ .|| +|.|+.+....
T Consensus 1 M~ILlTNDDGi~a--------------~Gi~aL~~~L~~--------~g~----~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGIDA--------------PGIRALAKALSA--------LGH----DVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-TTS--------------HHHHHHHHHHTT--------TSS----EEEEEEESSST
T ss_pred CeEEEEcCCCCCC--------------HHHHHHHHHHHh--------cCC----eEEEEeCCCCC
Confidence 7999999888632 467766777643 689 99999986543
No 111
>PLN02210 UDP-glucosyl transferase
Probab=73.00 E-value=41 Score=37.38 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred cceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHH--HHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCccccccee
Q 008531 276 VFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRAL--EDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK 353 (562)
Q Consensus 276 ~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarAL--e~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~ 353 (562)
..+|+++.+ -.-|++.-.+++|+.| .. +|+ .|.++|..... ..++.
T Consensus 8 ~~hvv~~P~-------------pa~GHi~P~l~La~~L~L~~--------~G~----~VT~v~t~~~~-------~~~~~ 55 (456)
T PLN02210 8 ETHVLMVTL-------------AFQGHINPMLKLAKHLSLSS--------KNL----HFTLATTEQAR-------DLLST 55 (456)
T ss_pred CCEEEEeCC-------------cccccHHHHHHHHHHHHhhc--------CCc----EEEEEeccchh-------hhhcc
Confidence 358999874 2358888999999984 45 799 89999864211 11221
Q ss_pred ecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHc-CCCCCEEEecCcChHHHHHHHHHhcCCcEE
Q 008531 354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKEL-QGKPDLIIGNYSDGNIVASLLAHKLGVTQC 432 (562)
Q Consensus 354 i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~-~~~PDLIHaHywdsGlVA~lLArklgVP~V 432 (562)
+. ...+.++++..+. |..... . .+...++..+.+.....+.+.+ +.+||.|..-...+ .+..+|+++|||-+
T Consensus 56 ~~--~~~~~~~~~~~~~-glp~~~-~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~--w~~~vA~~lgIP~~ 128 (456)
T PLN02210 56 VE--KPRRPVDLVFFSD-GLPKDD-P-RAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTP--WVPAVAAAHNIPCA 128 (456)
T ss_pred cc--CCCCceEEEECCC-CCCCCc-c-cCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcch--hHHHHHHHhCCCEE
Confidence 11 0122334443221 221111 1 1222333333322222221111 23689988755432 68888999999974
No 112
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=72.10 E-value=18 Score=35.00 Aligned_cols=146 Identities=21% Similarity=0.319 Sum_probs=77.0
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCccccccc
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWI 378 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~i 378 (562)
.||+-.-.+.+.+++..+ ...++..++|...+.+.. -..++|..... ...++.+|--.. +.+.|.
T Consensus 7 sGGHt~eml~L~~~~~~~----------~~~~~~~ivt~~d~~S~~--k~~~~~~~~~~-~~~~~~~~r~r~--v~q~~~ 71 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDND----------RYQPRTYIVTEGDKQSRS--KAEQLEKSSSK-RHKILEIPRARE--VGQSYL 71 (170)
T ss_pred CcHHHHHHHHHHHHhhhh----------cCCCcEEEEEcCCcccHH--HHHHHHHhccc-cceeeccceEEE--echhhH
Confidence 589888888777777332 223478888875443210 00111211100 012333321111 111111
Q ss_pred CccCchHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc------CCcEEEEecCCCcCcCCCCcchhcc
Q 008531 379 SRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL------GVTQCTIAHALEKTKYPDSDIYWKN 452 (562)
Q Consensus 379 sr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl------gVP~V~T~HSLe~~Ky~~s~~~w~~ 452 (562)
..++..+-.+...+ ..+. ..+||+|.++..-.++....+++.+ |.++|+.- |..+.+-
T Consensus 72 --~~~~~~l~~~~~~~-~il~---r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE-S~aRv~~--------- 135 (170)
T PF08660_consen 72 --TSIFTTLRAFLQSL-RILR---RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE-SFARVKT--------- 135 (170)
T ss_pred --hhHHHHHHHHHHHH-HHHH---HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE-eeeecCC---------
Confidence 13444555554433 3332 3489999999987787788888888 88888654 3222221
Q ss_pred cCcccccchhHHHHHHHHhhCCEEEecCHHHH
Q 008531 453 LDDKYHFSCQFTADLIAMNHTDFIITSTFQEI 484 (562)
Q Consensus 453 ~e~~y~~s~rf~aE~~amn~AD~IIaSS~qEi 484 (562)
...+.+ ++..-||..++-.++-.
T Consensus 136 ----lSlTGk-----lly~~aD~f~VQW~~l~ 158 (170)
T PF08660_consen 136 ----LSLTGK-----LLYPFADRFIVQWEELA 158 (170)
T ss_pred ----CchHHH-----HHHHhCCEEEEcCHHHH
Confidence 112333 35666999999877544
No 113
>PLN02670 transferase, transferring glycosyl groups
Probab=67.52 E-value=73 Score=35.80 Aligned_cols=120 Identities=20% Similarity=0.255 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceee--
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV-- 354 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i-- 354 (562)
.+|+|+.+- .-|++.-.+++|+.|+. +|+ .|.++|.-..-. +....
T Consensus 7 ~HVvl~P~p-------------aqGHi~P~l~LAk~La~--------~G~----~vT~v~t~~n~~-------~~~~~~~ 54 (472)
T PLN02670 7 LHVAMFPWL-------------AMGHLIPFLRLSKLLAQ--------KGH----KISFISTPRNLH-------RLPKIPS 54 (472)
T ss_pred cEEEEeCCh-------------hhhHHHHHHHHHHHHHh--------CCC----EEEEEeCCchHH-------hhhhccc
Confidence 378888742 24788899999998886 799 899887532111 11110
Q ss_pred cCCCCcEEEEecCCCCCcccccccCccCc----hHHHHHHHHH---HHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc
Q 008531 355 YGTKYSDILRVPFRTEKGVVRKWISRFEV----WPYLETYTED---VAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL 427 (562)
Q Consensus 355 ~~~~gv~I~RVP~~~~~~~~~~~isr~~l----~pyLe~fa~~---~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl 427 (562)
...++++++.+|+...+|..+.--+..++ +.++...... ..+.+.+ +.+|+.|.+-...+ .|.-+|+++
T Consensus 55 ~~~~~i~~~~lp~p~~dglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~cvI~D~f~~--wa~~vA~~~ 130 (472)
T PLN02670 55 QLSSSITLVSFPLPSVPGLPSSAESSTDVPYTKQQLLKKAFDLLEPPLTTFLE--TSKPDWIIYDYASH--WLPSIAAEL 130 (472)
T ss_pred cCCCCeeEEECCCCccCCCCCCcccccccchhhHHHHHHHHHHhHHHHHHHHH--hCCCcEEEECCcch--hHHHHHHHc
Confidence 01125888888865433322111011122 1233222222 2222223 23689888876432 477889999
Q ss_pred CCcEE
Q 008531 428 GVTQC 432 (562)
Q Consensus 428 gVP~V 432 (562)
|||-+
T Consensus 131 gIP~~ 135 (472)
T PLN02670 131 GISKA 135 (472)
T ss_pred CCCEE
Confidence 99954
No 114
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=67.29 E-value=61 Score=36.51 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=67.5
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
+|+++.+- .-|++.-.+++|+.|+. ..|+ .|.++|....-+. ..... .. .
T Consensus 7 HVvl~P~p-------------aqGHi~P~l~LAk~La~-------~~g~----~vT~v~t~~n~~~---~~~~~--~~-~ 56 (481)
T PLN02992 7 HAAMFSSP-------------GMGHVIPVIELGKRLSA-------NHGF----HVTVFVLETDAAS---AQSKF--LN-S 56 (481)
T ss_pred EEEEeCCc-------------ccchHHHHHHHHHHHHh-------CCCc----EEEEEeCCCchhh---hhhcc--cc-C
Confidence 78888742 35788889999988872 1698 8998886432110 00000 11 1
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHH----HHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEE
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLET----YTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCT 433 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~----fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~ 433 (562)
++++++.+|+....+..+. ..+....+.. ....+.+.+ ++...+|+.|.+-+.. ..+.-+|+++|||.+
T Consensus 57 ~~i~~~~lp~p~~~glp~~---~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~p~cvV~D~f~--~Wa~dVA~elgIP~v- 129 (481)
T PLN02992 57 TGVDIVGLPSPDISGLVDP---SAHVVTKIGVIMREAVPTLRSKI-AEMHQKPTALIVDLFG--TDALCLGGEFNMLTY- 129 (481)
T ss_pred CCceEEECCCccccCCCCC---CccHHHHHHHHHHHhHHHHHHHH-HhcCCCCeEEEECCcc--hhHHHHHHHcCCCEE-
Confidence 2588888886433221100 0111112222 223333333 3223468888887654 267889999999955
Q ss_pred EecCC
Q 008531 434 IAHAL 438 (562)
Q Consensus 434 T~HSL 438 (562)
.+++.
T Consensus 130 ~F~t~ 134 (481)
T PLN02992 130 IFIAS 134 (481)
T ss_pred EEecC
Confidence 33443
No 115
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=67.10 E-value=42 Score=37.82 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=21.5
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhc-CCcEEEE
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKL-GVTQCTI 434 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArkl-gVP~V~T 434 (562)
+.+||+|.+-.+. ..+..+++.+ ++|.|.+
T Consensus 134 ~~kFDlvi~e~~~--~c~~~la~~~~~~p~i~~ 164 (507)
T PHA03392 134 NNKFDLLVTEAFL--DYPLVFSHLFGDAPVIQI 164 (507)
T ss_pred CCceeEEEecccc--hhHHHHHHHhCCCCEEEE
Confidence 4579999998643 2444589999 9996544
No 116
>PLN02562 UDP-glycosyltransferase
Probab=66.29 E-value=70 Score=35.47 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=67.7
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceee-cC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV-YG 356 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i-~~ 356 (562)
+|+++.+- .-|++.-.+++|+.|+. .|+ .|.++|..... ..++.. ..
T Consensus 8 HVVlvPfP-------------aqGHi~PmL~LAk~Las--------~G~----~VT~vtt~~~~-------~~~~~~~~~ 55 (448)
T PLN02562 8 KIILVPYP-------------AQGHVTPMLKLASAFLS--------RGF----EPVVITPEFIH-------RRISATLDP 55 (448)
T ss_pred EEEEEcCc-------------cccCHHHHHHHHHHHHh--------CCC----EEEEEeCcchh-------hhhhhccCC
Confidence 78888742 24788899999998886 799 89999864321 111111 11
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHH----HHHHHHHHHHc-C-CCCCEEEecCcChHHHHHHHHHhcCCc
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYT----EDVAVEIAKEL-Q-GKPDLIIGNYSDGNIVASLLAHKLGVT 430 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa----~~~~~~i~~~~-~-~~PDLIHaHywdsGlVA~lLArklgVP 430 (562)
.++++++.+|.+...+. + .+++.+...+. ..+.+.+ +.+ . ..++.|.+-... ..+.-+|+++|||
T Consensus 56 ~~~i~~v~lp~g~~~~~-----~-~~~~~l~~a~~~~~~~~l~~ll-~~l~~~~pv~cvI~D~~~--~w~~~vA~~~giP 126 (448)
T PLN02562 56 KLGITFMSISDGQDDDP-----P-RDFFSIENSMENTMPPQLERLL-HKLDEDGEVACMVVDLLA--SWAIGVADRCGVP 126 (448)
T ss_pred CCCEEEEECCCCCCCCc-----c-ccHHHHHHHHHHhchHHHHHHH-HHhcCCCCcEEEEECCcc--HhHHHHHHHhCCC
Confidence 13588888887543211 1 12333333332 2222223 222 1 223677776543 2577788999999
Q ss_pred EEEEecCC
Q 008531 431 QCTIAHAL 438 (562)
Q Consensus 431 ~V~T~HSL 438 (562)
.++ +|+.
T Consensus 127 ~~~-f~~~ 133 (448)
T PLN02562 127 VAG-FWPV 133 (448)
T ss_pred EEE-Eech
Confidence 654 5554
No 117
>PLN02764 glycosyltransferase family protein
Probab=66.10 E-value=95 Score=34.80 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
++|+++.+- .-|+..-.+++|+.|+. +|+ .|.++|.-..-. .+..+..
T Consensus 6 ~Hvvl~P~p-------------aqGHi~P~l~LAk~La~--------~g~----~vT~~tt~~~~~-------~~~~~~~ 53 (453)
T PLN02764 6 FHVLMYPWF-------------ATGHMTPFLFLANKLAE--------KGH----TVTFLLPKKALK-------QLEHLNL 53 (453)
T ss_pred cEEEEECCc-------------ccccHHHHHHHHHHHHh--------CCC----EEEEEeCcchhh-------hhccccc
Confidence 578888742 24788899999999886 799 899998643111 1111111
Q ss_pred -CCCcEEEEecCCCCCcccccccCcc----CchHHHHH----HHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc
Q 008531 357 -TKYSDILRVPFRTEKGVVRKWISRF----EVWPYLET----YTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL 427 (562)
Q Consensus 357 -~~gv~I~RVP~~~~~~~~~~~isr~----~l~pyLe~----fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl 427 (562)
..+.+|.-+++...+|....--+.. +..+++.. ....+.+.+ +. .+||.|.+-+ . ..+.-+|+++
T Consensus 54 ~~~~~~v~~~~~p~~~glp~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l-~~--~~~~~iV~D~--~-~w~~~vA~~~ 127 (453)
T PLN02764 54 FPHNIVFRSVTVPHVDGLPVGTETVSEIPVTSADLLMSAMDLTRDQVEVVV-RA--VEPDLIFFDF--A-HWIPEVARDF 127 (453)
T ss_pred CCCCceEEEEECCCcCCCCCcccccccCChhHHHHHHHHHHHhHHHHHHHH-Hh--CCCCEEEECC--c-hhHHHHHHHh
Confidence 1133344444432223211100000 11122221 112233333 21 3689998874 2 3788899999
Q ss_pred CCcEEEEecCC
Q 008531 428 GVTQCTIAHAL 438 (562)
Q Consensus 428 gVP~V~T~HSL 438 (562)
|||.+ .+|+.
T Consensus 128 gIP~~-~f~~~ 137 (453)
T PLN02764 128 GLKTV-KYVVV 137 (453)
T ss_pred CCCEE-EEEcH
Confidence 99955 55543
No 118
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=65.85 E-value=95 Score=34.83 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceee-c
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKV-Y 355 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i-~ 355 (562)
.+|+|+.+- .-|++.-.+++|+.|+. +|+ .|.++|....-. .++.. .
T Consensus 10 ~HVvl~Pfp-------------aqGHi~P~l~LAk~La~--------~G~----~VTfv~T~~n~~-------~~~~~~~ 57 (477)
T PLN02863 10 THVLVFPFP-------------AQGHMIPLLDLTHRLAL--------RGL----TITVLVTPKNLP-------FLNPLLS 57 (477)
T ss_pred CEEEEecCc-------------ccchHHHHHHHHHHHHh--------CCC----EEEEEeCCCcHH-------HHhhhcc
Confidence 589998742 35788889989998886 799 899888643211 11111 1
Q ss_pred CCCCcEEEEecCCCCCcccccccCcc----CchHHH----HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc
Q 008531 356 GTKYSDILRVPFRTEKGVVRKWISRF----EVWPYL----ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL 427 (562)
Q Consensus 356 ~~~gv~I~RVP~~~~~~~~~~~isr~----~l~pyL----e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl 427 (562)
..++++++.+|+....++.+..-+-. +...++ ......+.+.+ +....+|+.|.+-... ..|.-+|+++
T Consensus 58 ~~~~i~~~~lp~P~~~~lPdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l-~~~~~~p~cvI~D~f~--~Wa~dVA~e~ 134 (477)
T PLN02863 58 KHPSIETLVLPFPSHPSIPSGVENVKDLPPSGFPLMIHALGELYAPLLSWF-RSHPSPPVAIISDMFL--GWTQNLACQL 134 (477)
T ss_pred cCCCeeEEeCCCCCcCCCCCCCcChhhcchhhHHHHHHHHHHhHHHHHHHH-HhCCCCCeEEEEcCch--HhHHHHHHHc
Confidence 11246666666532222211110001 112222 12223333333 2223457877776433 2577889999
Q ss_pred CCcEE
Q 008531 428 GVTQC 432 (562)
Q Consensus 428 gVP~V 432 (562)
|||.+
T Consensus 135 GIP~~ 139 (477)
T PLN02863 135 GIRRF 139 (477)
T ss_pred CCCEE
Confidence 99954
No 119
>PLN02173 UDP-glucosyl transferase family protein
Probab=63.92 E-value=98 Score=34.54 Aligned_cols=118 Identities=18% Similarity=0.134 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
.+|+|+.+- .-|++.-.+++|+.|+. .|+ .|.++|....-. .+.. ..
T Consensus 6 ~hvv~~P~p-------------aqGHi~P~l~lAk~La~--------~G~----~vT~v~t~~~~~-------~~~~-~~ 52 (449)
T PLN02173 6 GHVLAVPFP-------------SQGHITPIRQFCKRLHS--------KGF----KTTHTLTTFIFN-------TIHL-DP 52 (449)
T ss_pred cEEEEecCc-------------ccccHHHHHHHHHHHHc--------CCC----EEEEEECCchhh-------hccc-CC
Confidence 478888742 35888899989988886 799 899988642111 1100 01
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHH----HHHHHHHHHc-CCCC-CEEEecCcChHHHHHHHHHhcCCc
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE----DVAVEIAKEL-QGKP-DLIIGNYSDGNIVASLLAHKLGVT 430 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~----~~~~~i~~~~-~~~P-DLIHaHywdsGlVA~lLArklgVP 430 (562)
.++++++.+|.+-..+-.. ...++..|+..+.. .+.+.+.+.. ..+| +.|.+-.... .+.-+|+++|||
T Consensus 53 ~~~i~~~~ipdglp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~--Wa~dVA~elgIP 127 (449)
T PLN02173 53 SSPISIATISDGYDQGGFS---SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMP--WALDLAREFGLA 127 (449)
T ss_pred CCCEEEEEcCCCCCCcccc---cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcch--hHHHHHHHhCCC
Confidence 1358888887642110000 01233445543321 2233332211 2356 8888876432 577789999999
Q ss_pred EE
Q 008531 431 QC 432 (562)
Q Consensus 431 ~V 432 (562)
-+
T Consensus 128 ~v 129 (449)
T PLN02173 128 AA 129 (449)
T ss_pred EE
Confidence 65
No 120
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=60.80 E-value=93 Score=30.60 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=26.6
Q ss_pred CEEEecCcChHHHHHHHHHhcCCcEEEEecCCC
Q 008531 407 DLIIGNYSDGNIVASLLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 407 DLIHaHywdsGlVA~lLArklgVP~V~T~HSLe 439 (562)
.++.| .|+||+.|..+|.++++|-|...=++.
T Consensus 61 ~~liG-SSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIG-SSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEE-EChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 35555 589999999999999999999886553
No 121
>COG1647 Esterase/lipase [General function prediction only]
Probab=59.15 E-value=94 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
+.+..+.+.. ++-..|..+-.++||+.|..||..+.++=+++.
T Consensus 72 v~d~Y~~L~~--~gy~eI~v~GlSmGGv~alkla~~~p~K~iv~m 114 (243)
T COG1647 72 VEDGYRDLKE--AGYDEIAVVGLSMGGVFALKLAYHYPPKKIVPM 114 (243)
T ss_pred HHHHHHHHHH--cCCCeEEEEeecchhHHHHHHHhhCCccceeee
Confidence 3455555633 344566677779999999999999986544333
No 122
>PLN02534 UDP-glycosyltransferase
Probab=57.62 E-value=2e+02 Score=32.57 Aligned_cols=128 Identities=13% Similarity=0.253 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeec-
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVY- 355 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~- 355 (562)
.+|+++.+- .-|++.-.+++|+.|+. +|+ .|+++|....... .........
T Consensus 9 ~Hvv~vPfp-------------aqGHi~P~l~LAk~La~--------~G~----~vT~v~t~~n~~~---~~~~~~~~~~ 60 (491)
T PLN02534 9 LHFVLIPLM-------------AQGHMIPMIDMARLLAE--------RGV----IVSLVTTPQNASR---FAKTIDRARE 60 (491)
T ss_pred CEEEEECCC-------------CcchHHHHHHHHHHHHh--------CCC----eEEEEECCCcHHH---Hhhhhhhccc
Confidence 378888742 24788899999998886 799 8999986431110 000000000
Q ss_pred CCCCcEEEEecCCCC-CcccccccCccCc--hHHHHHHH-------HHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHH
Q 008531 356 GTKYSDILRVPFRTE-KGVVRKWISRFEV--WPYLETYT-------EDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAH 425 (562)
Q Consensus 356 ~~~gv~I~RVP~~~~-~~~~~~~isr~~l--~pyLe~fa-------~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLAr 425 (562)
....++++.+|+... +|.....-+..++ ..++..|. ..+.+.+ +....+|+.|.+-... ..+.-+|+
T Consensus 61 ~~~~i~~~~lp~p~~~dglp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL-~~~~~pp~cIV~D~f~--~Wa~dVA~ 137 (491)
T PLN02534 61 SGLPIRLVQIPFPCKEVGLPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFL-EQAKPPPSCIISDKCL--SWTSKTAQ 137 (491)
T ss_pred cCCCeEEEEcCCCCccCCCCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHH-HhcCCCCcEEEECCcc--HHHHHHHH
Confidence 001278888885432 1221110000111 12232222 2233333 2223467888876543 24667788
Q ss_pred hcCCcEEEEec
Q 008531 426 KLGVTQCTIAH 436 (562)
Q Consensus 426 klgVP~V~T~H 436 (562)
++|||-+ +++
T Consensus 138 ~lgIP~v-~F~ 147 (491)
T PLN02534 138 RFNIPRI-VFH 147 (491)
T ss_pred HhCCCeE-EEe
Confidence 9999953 444
No 123
>PLN03015 UDP-glucosyl transferase
Probab=57.17 E-value=1.2e+02 Score=34.30 Aligned_cols=120 Identities=15% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccC
Q 008531 300 GGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWIS 379 (562)
Q Consensus 300 GGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~is 379 (562)
-|+..-.+++|+.|+.. .|. .|.|+|....... ..............+++++.+|++..+++.+. .
T Consensus 14 qGHi~P~l~LAk~La~~-------~g~----~vT~v~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~--~ 79 (470)
T PLN03015 14 LGHLIPILELGNRLSSV-------LNI----HVTILAVTSGSSS-PTETEAIHAAAARTTCQITEIPSVDVDNLVEP--D 79 (470)
T ss_pred cccHHHHHHHHHHHHhC-------CCC----eEEEEECCCchhh-hccccccccccCCCceEEEECCCCccccCCCC--C
Confidence 48888999999998851 287 7999875432210 00000011010001488888887654322110 0
Q ss_pred ccCchHHHH----HHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEecC
Q 008531 380 RFEVWPYLE----TYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 380 r~~l~pyLe----~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~HS 437 (562)
. +....+. .....+.+.+ +....+|+.|.+-... ..+.-+|+++|||-++.+++
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~ciV~D~f~--~w~~~vA~~lgIP~~~~f~~ 137 (470)
T PLN03015 80 A-TIFTKMVVKMRAMKPAVRDAV-KSMKRKPTVMIVDFFG--TALMSIADDVGVTAKYVYIP 137 (470)
T ss_pred c-cHHHHHHHHHHhchHHHHHHH-HhcCCCCeEEEEcCCc--HHHHHHHHHcCCCEEEEEcC
Confidence 1 2222222 2222333344 2223467888776533 25778899999996555543
No 124
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=56.19 E-value=45 Score=30.14 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCCEEEecC-c--ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 393 DVAVEIAKELQGKPDLIIGNY-S--DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHy-w--dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
.+.+.|.+ ..+|=+|-++. + .+.-....+++++|+|++.|..+-+.....+ ..+.... ..++.+- =..+
T Consensus 3 ~~~~~L~~--A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~h-p~~~G~~---g~~~~~~--~~~~ 74 (137)
T PF00205_consen 3 EAADLLSS--AKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDH-PLFLGYL---GLFGSPA--ANEA 74 (137)
T ss_dssp HHHHHHHH---SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTS-TTEEEES---CGGSCHH--HHHH
T ss_pred HHHHHHHh--CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCC-chhcccC---CccCCHH--HHHH
Confidence 34555543 46898999886 3 5566777899999999999999854332111 1110000 0011221 1346
Q ss_pred HhhCCEEEecC
Q 008531 470 MNHTDFIITST 480 (562)
Q Consensus 470 mn~AD~IIaSS 480 (562)
+++||+||+..
T Consensus 75 l~~aDlvl~iG 85 (137)
T PF00205_consen 75 LEQADLVLAIG 85 (137)
T ss_dssp HHHSSEEEEES
T ss_pred hcCCCEEEEEC
Confidence 79999999865
No 125
>PHA01633 putative glycosyl transferase group 1
Probab=55.02 E-value=16 Score=39.22 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=27.0
Q ss_pred HHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCCC
Q 008531 469 AMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYT 535 (562)
Q Consensus 469 amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~~ 535 (562)
.|.+.+.+|++|....+ .+.++ |+. ..+ +||+|||++.|.|..
T Consensus 89 ~m~~~~~vIavS~~t~~----~L~~~----------------G~~---~~i-~I~~GVD~~~f~p~~ 131 (335)
T PHA01633 89 YLLQDVKFIPNSKFSAE----NLQEV----------------GLQ---VDL-PVFHGINFKIVENAE 131 (335)
T ss_pred HHhcCCEEEeCCHHHHH----HHHHh----------------CCC---Cce-eeeCCCChhhcCccc
Confidence 46667788998865543 11222 222 233 578999999998854
No 126
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=53.36 E-value=39 Score=36.13 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecC
Q 008531 387 LETYTEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 387 Le~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HS 437 (562)
+......+.+.+.+ .+||+|-+|. ..+.++|.++|..+|||++|..=+
T Consensus 78 ~~~~~~~~~~~~~~---~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 78 MGLTIIGFSDAFER---LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHHHHH---hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 33334455555533 5899999997 688889999999999999976544
No 127
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=50.86 E-value=53 Score=39.24 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHh-cCCcEEEEecCCCcCcCCCCcchhcccCcccccchh
Q 008531 384 WPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHK-LGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQ 462 (562)
Q Consensus 384 ~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArk-lgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~r 462 (562)
|.......+.+.+.+.+.. ..=|+|-.|...--+++..|.++ -++++.+..|.-. +.+. .|.-+. .|
T Consensus 127 w~~Y~~vN~~FA~~i~~~~-~~~d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPF----Ps~e-~fr~lp------~r 194 (797)
T PLN03063 127 YDAYKKANRMFLDVVKENY-EEGDVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPF----PSSE-IYKTLP------SR 194 (797)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCEEEEecchhhhHHHHHHHhCCCCcEEEEecCCC----CCHH-HHhhCC------CH
Confidence 4333333334444443321 23389999987666777777666 4688999999732 2121 222111 11
Q ss_pred HHHHHHHHhhCCEEEecCHHHHhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 463 FTADLIAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 463 f~aE~~amn~AD~IIaSS~qEi~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
- .=...|-.||.|---|..-...--......-. ...+.-++. ..| -..++.|||+|||++.|.+.
T Consensus 195 ~-~il~gll~aDligF~t~~y~r~Fl~~~~r~l~-~~~~~~~i~--~~g---r~~~I~viP~GID~~~f~~~ 259 (797)
T PLN03063 195 S-ELLRAVLTADLIGFHTYDFARHFLSACTRILG-VEGTHEGVV--DQG---KVTRVAVFPIGIDPERFINT 259 (797)
T ss_pred H-HHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhC-ccccCCceE--ECC---eEEEEEEEecccCHHHHHHH
Confidence 1 11346888898888776544310000000000 000001111 011 12389999999999999764
No 128
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=49.62 E-value=59 Score=38.10 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhcCCCC-------CCchHHHHHHhhcCCccccCCcHHHHHHHHHHHHHhhcC-----C---CcCchhHHh
Q 008531 206 HVLRKAEEYLTTVVPE-------TPFSELALRFQEIGLERGWGDTAERALEMIQLLLDLLEA-----P---DPCTLETFL 270 (562)
Q Consensus 206 ~~l~~a~~~l~~~~~~-------~p~~~~~~~~~~~g~e~gwg~~a~rv~e~~~~l~~~l~a-----p---~p~~le~f~ 270 (562)
+-.++|...|+..-.. .-|.+ +.|.+|==+-||-..+ ..+.++-|+.-+-- | |...=|+
T Consensus 291 ~~~~~~~~~l~~~~~k~~l~l~~~d~~~--~~~~~l~~~~g~~~~~--~~~~f~~~~~~i~~~p~g~~~~~~~~~~~~-- 364 (652)
T PRK02122 291 KLIRRAVVWLCQKLGKPILKLTDKDYNE--NGLSDLLAQYGSAYNV--NIKVFNDLQHTITGWPGGKPNADDTNRPER-- 364 (652)
T ss_pred HHHHHHHHHHHHHhCCCcccCchhhhhh--cCHHHHHHHhCcHHHH--HHHHHHHHHHHhcCCCCCCCCcccccCCcc--
Confidence 3567787777654321 12221 2233333334663332 34566667666633 2 2222232
Q ss_pred cCCCccceEEEEcCCC
Q 008531 271 GRIPMVFNVVILTPHG 286 (562)
Q Consensus 271 ~r~pm~~rIliiS~Hg 286 (562)
.-|..+||+++|||.
T Consensus 365 -~~~~~~rvLv~spHP 379 (652)
T PRK02122 365 -ALPYPKRVIIFSPHP 379 (652)
T ss_pred -cccCCceEEEEEeCC
Confidence 236668999999995
No 129
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=49.58 E-value=2.5e+02 Score=31.38 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=64.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
.+|+++.+- .-|++.-.+++|+.|+. .|+ .|.++|....-. ... ..
T Consensus 8 ~HVvlvPfp-------------aqGHi~P~l~LAk~La~--------~G~----~VT~v~T~~n~~------~~~---~~ 53 (451)
T PLN02410 8 RRVVLVPVP-------------AQGHISPMMQLAKTLHL--------KGF----SITIAQTKFNYF------SPS---DD 53 (451)
T ss_pred CEEEEECCC-------------ccccHHHHHHHHHHHHc--------CCC----EEEEEeCccccc------ccc---cC
Confidence 588998742 24788889989988886 799 899888643211 010 11
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHHHHHHHH----HHHHHHHHH---cCCCCCEEEecCcChHHHHHHHHHhcCC
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTE----DVAVEIAKE---LQGKPDLIIGNYSDGNIVASLLAHKLGV 429 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~----~~~~~i~~~---~~~~PDLIHaHywdsGlVA~lLArklgV 429 (562)
..+++..-+|.+-..+ -........++..+.. .+.+.+.+. ...+++.|.+-... ..+.-+|+++||
T Consensus 54 ~~~i~~~~ip~glp~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~--~Wa~dvA~~lgI 127 (451)
T PLN02410 54 FTDFQFVTIPESLPES----DFKNLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFM--YFAEAAAKEFKL 127 (451)
T ss_pred CCCeEEEeCCCCCCcc----cccccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcc--hHHHHHHHHcCC
Confidence 1246667676542110 0000112344443322 222222211 12246888887644 257788999999
Q ss_pred cEEE
Q 008531 430 TQCT 433 (562)
Q Consensus 430 P~V~ 433 (562)
|.+.
T Consensus 128 P~v~ 131 (451)
T PLN02410 128 PNVI 131 (451)
T ss_pred CEEE
Confidence 9554
No 130
>PLN02555 limonoid glucosyltransferase
Probab=49.31 E-value=2.7e+02 Score=31.47 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecC
Q 008531 299 TGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRL 338 (562)
Q Consensus 299 tGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~ 338 (562)
.-|++.-.+++|+.|+. .|. .|+++|..
T Consensus 17 aqGHi~Pml~lA~~La~--------~G~----~vT~v~T~ 44 (480)
T PLN02555 17 GQGHVNPLLRLGKLLAS--------KGL----LVTFVTTE 44 (480)
T ss_pred ccccHHHHHHHHHHHHh--------CCC----eEEEEecc
Confidence 46788999999998886 799 89999875
No 131
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=49.26 E-value=84 Score=29.63 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCCEEEecCc-ChHH-HHHHHHHh-c-CCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHH
Q 008531 390 YTEDVAVEIAKELQGKPDLIIGNYS-DGNI-VASLLAHK-L-GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTA 465 (562)
Q Consensus 390 fa~~~~~~i~~~~~~~PDLIHaHyw-dsGl-VA~lLArk-l-gVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~a 465 (562)
+.+.+.+.+. ..+||+|.+-+. .+++ ++.+-++. + ++|++ |.-|-..+- + ..
T Consensus 77 ~~~~l~~~l~---~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~-tvvTD~~~~--H--~~---------------- 132 (169)
T PF06925_consen 77 FARRLIRLLR---EFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVV-TVVTDFDTV--H--PF---------------- 132 (169)
T ss_pred HHHHHHHHHh---hcCCCEEEECCcchhhhHHHHHHHhhcccCCcEE-EEEcCCCCC--C--cC----------------
Confidence 3344555552 369999999875 4555 44333333 4 46665 444421110 1 11
Q ss_pred HHHHHhhCCEEEecCHHHHh
Q 008531 466 DLIAMNHTDFIITSTFQEIA 485 (562)
Q Consensus 466 E~~amn~AD~IIaSS~qEi~ 485 (562)
|+-..+|.-++.|....+
T Consensus 133 --W~~~~~D~y~Vase~~~~ 150 (169)
T PF06925_consen 133 --WIHPGVDRYFVASEEVKE 150 (169)
T ss_pred --eecCCCCEEEECCHHHHH
Confidence 235678999998876554
No 132
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.75 E-value=1.8e+02 Score=28.41 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCCCEEEecC---cChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecC
Q 008531 404 GKPDLIIGNY---SDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITST 480 (562)
Q Consensus 404 ~~PDLIHaHy---wdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS 480 (562)
.+||++..-- |+.- ...+++.|||++...=-+..... . .|..... .-+.+++.-|.|.+.|
T Consensus 94 ~~P~~~i~~EtElWPnl---l~~a~~~~ip~~LvNarls~~s~--~---------~~~~~~~--~~r~~l~~f~~i~aqs 157 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNL---LREAKRRGIPVVLVNARLSERSF--R---------RYRRFPF--LFRPLLSRFDRILAQS 157 (186)
T ss_dssp H--SEEEEES----HHH---HHH-----S-EEEEEE-------------------------H--HHHHHGGG-SEEEESS
T ss_pred hCCCEEEEEccccCHHH---HHHHhhcCCCEEEEeeeeccccc--h---------hhhhhHH--HHHHHHHhCCEEEECC
Confidence 3799988764 6522 33456889998877643321111 0 1111111 2345789999999999
Q ss_pred HHHHh
Q 008531 481 FQEIA 485 (562)
Q Consensus 481 ~qEi~ 485 (562)
....+
T Consensus 158 ~~da~ 162 (186)
T PF04413_consen 158 EADAE 162 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 133
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=45.11 E-value=46 Score=35.49 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHh
Q 008531 393 DVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMN 471 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn 471 (562)
.+.+.+.+ .+||+|-.+. ..+.++|+++|..++||++|.--|+--.... +|. .|+ ..|. .+-+
T Consensus 58 ~~~~~~~~---~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~-~g~----~de----~~R~----~i~~ 121 (346)
T PF02350_consen 58 ELADVLER---EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRT-EGM----PDE----INRH----AIDK 121 (346)
T ss_dssp HHHHHHHH---HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TT-SST----THH----HHHH----HHHH
T ss_pred HHHHHHHh---cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccC-CCC----chh----hhhh----hhhh
Confidence 34444433 3899999996 7888999999999999988776654211110 110 010 1121 2456
Q ss_pred hCCEEEecCHHHHh
Q 008531 472 HTDFIITSTFQEIA 485 (562)
Q Consensus 472 ~AD~IIaSS~qEi~ 485 (562)
-||.-.++|....+
T Consensus 122 la~lhf~~t~~~~~ 135 (346)
T PF02350_consen 122 LAHLHFAPTEEARE 135 (346)
T ss_dssp H-SEEEESSHHHHH
T ss_pred hhhhhccCCHHHHH
Confidence 78888888876553
No 134
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=44.97 E-value=3.9e+02 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCCCEEEec---------C-cChHH-HHHHHHHhcCCcEEEEec
Q 008531 403 QGKPDLIIGN---------Y-SDGNI-VASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 403 ~~~PDLIHaH---------y-wdsGl-VA~lLArklgVP~V~T~H 436 (562)
..+||||.+- . ..||. .|..=|..+|||-+-.-.
T Consensus 89 ~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 89 PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 4579999874 1 34555 445566778999775543
No 135
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=44.35 E-value=72 Score=37.46 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=59.9
Q ss_pred CCCEEEecCcChHHHHHHHHHhc-CCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEecCHHH
Q 008531 405 KPDLIIGNYSDGNIVASLLAHKL-GVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIITSTFQE 483 (562)
Q Consensus 405 ~PDLIHaHywdsGlVA~lLArkl-gVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIaSS~qE 483 (562)
.-|+|..|...--+++..|.++. +.+..+-.|..--. +. .+.-+ +.+- .=...|-.||.|---|..-
T Consensus 133 ~~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~----~~-~f~~l------p~~~-~ll~~ll~~Dligf~t~~~ 200 (726)
T PRK14501 133 PGDVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPS----FE-VFRLL------PWRE-EILEGLLGADLIGFHTYDY 200 (726)
T ss_pred CCCEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCC----hH-HHhhC------CChH-HHHHHHhcCCeEEeCCHHH
Confidence 34999999877777888887664 57888888864221 11 12111 1111 1134688999988877643
Q ss_pred HhcccccccccccccccccCCceeeecccccCCCceEEecCCCccCCccCC
Q 008531 484 IAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPY 534 (562)
Q Consensus 484 i~~~~~~l~qyes~~~ft~p~Lyr~v~gi~v~dpKi~VIPpGVD~e~F~P~ 534 (562)
...--....+.-.. -+-.+-.+ ..| ...++.|+|+|||++.|.+.
T Consensus 201 ~r~Fl~~~~~~l~~--~~~~~~~~-~~g---r~~~v~v~p~GID~~~f~~~ 245 (726)
T PRK14501 201 VRHFLSSVLRVLGY--ETELGEIR-LGG---RIVRVDAFPMGIDYDKFHNS 245 (726)
T ss_pred HHHHHHHHHHHcCC--ccCCCeEE-ECC---EEEEEEEEECeEcHHHHHHH
Confidence 32100000000000 00000000 011 11279999999999999874
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=43.01 E-value=3.8e+02 Score=29.76 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=29.6
Q ss_pred HHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCCEEEe
Q 008531 421 SLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTDFIIT 478 (562)
Q Consensus 421 ~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD~IIa 478 (562)
.++|+..|.|+++-.+|.+..+.. .++++ =+++++.||.|.+
T Consensus 141 ~l~A~l~gkpv~l~gqsiGPf~~~--------------~~r~l--~r~vl~~~~~Itv 182 (426)
T PRK10017 141 ALCAFMAKKPLYMIGHSVGPFQDE--------------QFNQL--ANYVFGHCDALIL 182 (426)
T ss_pred HHHHHHcCCCEEEECCcCCCcCCH--------------HHHHH--HHHHHhcCCEEEE
Confidence 468889999999999998755421 12222 2456899999877
No 137
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.30 E-value=5e+02 Score=29.01 Aligned_cols=151 Identities=16% Similarity=0.065 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCch
Q 008531 305 YILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVW 384 (562)
Q Consensus 305 YVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~ 384 (562)
.+..=|..|++ +|. +|+++....+. +.|.+-.-++++|+.+|..+.....+ +.-..
T Consensus 28 RMqYHA~Sla~--------~gf----~VdliGy~~s~--------p~e~l~~hprI~ih~m~~l~~~~~~p----~~~~l 83 (444)
T KOG2941|consen 28 RMQYHALSLAK--------LGF----QVDLIGYVESI--------PLEELLNHPRIRIHGMPNLPFLQGGP----RVLFL 83 (444)
T ss_pred HHHHHHHHHHH--------cCC----eEEEEEecCCC--------ChHHHhcCCceEEEeCCCCcccCCCc----hhhhh
Confidence 44444556665 899 99999876543 23333334689999988877532222 21111
Q ss_pred HHHHHHHHH--HHHHHHHHcCCCCCEEEecC---cChHHHHHHHHHhcCCcEEEEecCCCcC---cCCCCcchhcccCcc
Q 008531 385 PYLETYTED--VAVEIAKELQGKPDLIIGNY---SDGNIVASLLAHKLGVTQCTIAHALEKT---KYPDSDIYWKNLDDK 456 (562)
Q Consensus 385 pyLe~fa~~--~~~~i~~~~~~~PDLIHaHy---wdsGlVA~lLArklgVP~V~T~HSLe~~---Ky~~s~~~w~~~e~~ 456 (562)
+ +..|-+- +.-.+-. -..+|+|-.+- -+.-.|+.+.+.-.|.-+++..|-.+++ ++.. | .
T Consensus 84 ~-lKvf~Qfl~Ll~aL~~--~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~-g--------~ 151 (444)
T KOG2941|consen 84 P-LKVFWQFLSLLWALFV--LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKL-G--------F 151 (444)
T ss_pred H-HHHHHHHHHHHHHHHh--ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhc-C--------C
Confidence 1 1111111 1111111 35789998885 4777788888899999999999988765 1111 1 1
Q ss_pred cccchhH--HHHHHHHhhCCEEEecCHHHHhccccccccc
Q 008531 457 YHFSCQF--TADLIAMNHTDFIITSTFQEIAGSKDTVGQY 494 (562)
Q Consensus 457 y~~s~rf--~aE~~amn~AD~IIaSS~qEi~~~~~~l~qy 494 (562)
+|.--++ ..|..--+-||.-.++|..... |+.+.+
T Consensus 152 ~h~lV~l~~~~E~~fgk~a~~nLcVT~AMr~---dL~qnW 188 (444)
T KOG2941|consen 152 QHPLVRLVRWLEKYFGKLADYNLCVTKAMRE---DLIQNW 188 (444)
T ss_pred CCchHHHHHHHHHHhhcccccchhhHHHHHH---HHHHhc
Confidence 2233333 3688888999999999987664 455555
No 138
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=42.08 E-value=4.2e+02 Score=27.61 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCCCCEEEec----------CcChHH-HHHHHHHhcCCcEEEEec
Q 008531 403 QGKPDLIIGN----------YSDGNI-VASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 403 ~~~PDLIHaH----------ywdsGl-VA~lLArklgVP~V~T~H 436 (562)
..+||||.+- -..||. .|..-|-.+|||-+-.-.
T Consensus 84 ~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 84 DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 4579999864 124455 445566778999775543
No 139
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=42.08 E-value=1.9e+02 Score=28.55 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCCCEEEecCcChHHHHHH--HHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhH-HHHHHHHhhCCEEEecC
Q 008531 404 GKPDLIIGNYSDGNIVASL--LAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQF-TADLIAMNHTDFIITST 480 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~l--LArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf-~aE~~amn~AD~IIaSS 480 (562)
..+|+|.+-. +.+++..+ .-..-++|.+.-+|--.- -|+-+... +-..++ ......+=.||.|+=+|
T Consensus 58 ~~~dll~aTs-mldLa~l~gL~p~l~~~p~ilYFHENQl-~YP~~~~~--------~rd~~~~~~ni~saLaAD~v~FNS 127 (168)
T PF12038_consen 58 HSYDLLFATS-MLDLATLRGLRPDLANVPKILYFHENQL-AYPVSPGQ--------ERDFQYGMNNIYSALAADRVVFNS 127 (168)
T ss_pred cCCCEEEeec-cccHHHHHhhccCCCCCCEEEEEecCcc-cCCCCCCc--------cccccHHHHHHHHHHhceeeeecc
Confidence 4689999964 33332222 113357999999994322 23322110 011222 12344677899999887
Q ss_pred HHHHhcccccccccccccccccCCce--eeecccccCCCceEEecCCC
Q 008531 481 FQEIAGSKDTVGQYESHTAFTLPGLY--RVVHGIDVFDPKFNIVSPGA 526 (562)
Q Consensus 481 ~qEi~~~~~~l~qyes~~~ft~p~Ly--r~v~gi~v~dpKi~VIPpGV 526 (562)
.-..+.-=+.+.++-. .||+.- .++..| .+|-.|+|+|+
T Consensus 128 ~~nr~sFL~~~~~fL~----~~PD~~p~~~~~~I---~~Ks~VL~~pi 168 (168)
T PF12038_consen 128 AFNRDSFLDGIPSFLK----RMPDHRPKGLVERI---RAKSQVLPVPI 168 (168)
T ss_pred hhhHHHHHHHHHHHHH----HCCCCCchhHHHHH---hccCeecCCCC
Confidence 5333311111222211 133221 122233 46888888885
No 140
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=41.02 E-value=3.5e+02 Score=28.31 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
|||++....|.++ -.|.-|+++|. .++ +|.|+.+....+ |... .+ .-
T Consensus 1 mrILlTNDDGi~a--------------~Gi~aL~~al~---------~~~----dV~VVAP~~~qS-g~s~--sl---Tl 47 (252)
T COG0496 1 MRILLTNDDGIHA--------------PGIRALARALR---------EGA----DVTVVAPDREQS-GASH--SL---TL 47 (252)
T ss_pred CeEEEecCCccCC--------------HHHHHHHHHHh---------hCC----CEEEEccCCCCc-cccc--cc---cc
Confidence 7999998888654 35665666665 377 899998754332 2111 11 11
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchH-HHHHHHHHHHHHHHHHcCCCCCEEEec----------CcChHH-HHHHHH
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWP-YLETYTEDVAVEIAKELQGKPDLIIGN----------YSDGNI-VASLLA 424 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~p-yLe~fa~~~~~~i~~~~~~~PDLIHaH----------ywdsGl-VA~lLA 424 (562)
.+-.++.++..+.. ++. . -| -+- .-.+..+.+ +.+||||.+- .+.||. .|+.=+
T Consensus 48 ~~Plr~~~~~~~~~------av~--G-TPaDCV---~lal~~l~~--~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea 113 (252)
T COG0496 48 HEPLRVRQVDNGAY------AVN--G-TPADCV---ILGLNELLK--EPRPDLVVSGINAGANLGDDVIYSGTVAAAMEA 113 (252)
T ss_pred ccCceeeEeccceE------Eec--C-ChHHHH---HHHHHHhcc--CCCCCEEEeCccCCCccccceeeeehHHHHHHH
Confidence 11344444433210 110 0 11 111 112233321 2459999875 133344 555567
Q ss_pred HhcCCcEEEEecC
Q 008531 425 HKLGVTQCTIAHA 437 (562)
Q Consensus 425 rklgVP~V~T~HS 437 (562)
..+|||-+-.-+.
T Consensus 114 ~~~GipsIA~S~~ 126 (252)
T COG0496 114 ALLGIPAIAISLA 126 (252)
T ss_pred HHcCccceeeeeh
Confidence 7799998876664
No 141
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=40.72 E-value=52 Score=35.71 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEE
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCT 433 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~ 433 (562)
.+||+|-+ .||+++..+|+..|+|+++
T Consensus 92 ~~p~~v~~---~Gg~v~~~aA~~~~~p~~~ 118 (396)
T TIGR03492 92 KKGDLIVA---VGDIVPLLFAWLSGKPYAF 118 (396)
T ss_pred hcCCEEEE---ECcHHHHHHHHHcCCCceE
Confidence 38999988 6889999999999999887
No 142
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=40.48 E-value=2e+02 Score=26.85 Aligned_cols=105 Identities=22% Similarity=0.266 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCccccccee-ecCCCC-cEEEEecCCCCCcccccccCcc
Q 008531 304 VYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEK-VYGTKY-SDILRVPFRTEKGVVRKWISRF 381 (562)
Q Consensus 304 vYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~-i~~~~g-v~I~RVP~~~~~~~~~~~isr~ 381 (562)
...+..|+.|++. .|. +|.+++-...+. ..+.+.. +.. .| .+|+++...... ..
T Consensus 18 ~e~l~~A~~La~~-------~g~----~v~av~~G~~~~----~~~~l~~~l~~-~G~d~v~~~~~~~~~--------~~ 73 (164)
T PF01012_consen 18 LEALEAARRLAEA-------LGG----EVTAVVLGPAEE----AAEALRKALAK-YGADKVYHIDDPALA--------EY 73 (164)
T ss_dssp HHHHHHHHHHHHC-------TTS----EEEEEEEETCCC----HHHHHHHHHHS-TTESEEEEEE-GGGT--------TC
T ss_pred HHHHHHHHHHHhh-------cCC----eEEEEEEecchh----hHHHHhhhhhh-cCCcEEEEecCcccc--------cc
Confidence 4566666666663 577 888888762111 0011000 110 13 467777655321 11
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCCC
Q 008531 382 EVWPYLETYTEDVAVEIAKELQGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 382 ~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSLe 439 (562)
+. +.++..+.+.+.+ .+||+|-... ..+.-+|..+|.++|.|++.-.-+++
T Consensus 74 ~~----~~~a~~l~~~~~~---~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l~ 125 (164)
T PF01012_consen 74 DP----EAYADALAELIKE---EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDLE 125 (164)
T ss_dssp -H----HHHHHHHHHHHHH---HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEEE
T ss_pred CH----HHHHHHHHHHHHh---cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEEE
Confidence 11 2344444444422 4799988776 57777999999999999998776543
No 143
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=40.17 E-value=3e+02 Score=30.89 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=65.9
Q ss_pred eEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCC
Q 008531 278 NVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGT 357 (562)
Q Consensus 278 rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~ 357 (562)
+|+++.+- .-|++.-.+++|+.|+.. .|+ .|.++|....... .. .......
T Consensus 5 hvv~~P~p-------------~qGHi~P~l~La~~La~~-------~G~----~vT~v~t~~~~~~--~~---~~~~~~~ 55 (455)
T PLN02152 5 HFLLVTFP-------------AQGHVNPSLRFARRLIKT-------TGT----RVTFATCLSVIHR--SM---IPNHNNV 55 (455)
T ss_pred EEEEecCc-------------ccccHHHHHHHHHHHhhC-------CCc----EEEEEeccchhhh--hh---hccCCCC
Confidence 68888642 368888999888888741 588 8998886421010 00 0101112
Q ss_pred CCcEEEEecCCCCCcccccccCccCchHHHHHHH----HHHHHHHHHHc-CCCC-CEEEecCcChHHHHHHHHHhcCCcE
Q 008531 358 KYSDILRVPFRTEKGVVRKWISRFEVWPYLETYT----EDVAVEIAKEL-QGKP-DLIIGNYSDGNIVASLLAHKLGVTQ 431 (562)
Q Consensus 358 ~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa----~~~~~~i~~~~-~~~P-DLIHaHywdsGlVA~lLArklgVP~ 431 (562)
++++++.+|.+-.++.. -...++..++..+. ..+.+.+.+.. .++| +.|.+.... ..|.-+|+++|||.
T Consensus 56 ~~i~~~~i~dglp~g~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~--~wa~dvA~~lgIP~ 130 (455)
T PLN02152 56 ENLSFLTFSDGFDDGVI---SNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILP--NWAPKVARRFHLPS 130 (455)
T ss_pred CCEEEEEcCCCCCCccc---cccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCcc--HhHHHHHHHhCCCE
Confidence 35777777643221110 00123333333322 23333332211 2244 788887543 24677899999996
Q ss_pred EEEecC
Q 008531 432 CTIAHA 437 (562)
Q Consensus 432 V~T~HS 437 (562)
+ ++++
T Consensus 131 ~-~f~t 135 (455)
T PLN02152 131 V-LLWI 135 (455)
T ss_pred E-EEEC
Confidence 3 4443
No 144
>PRK04940 hypothetical protein; Provisional
Probab=38.93 E-value=1.1e+02 Score=30.28 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCCEEEecCcChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHhhCC--EEEecCHH
Q 008531 405 KPDLIIGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMNHTD--FIITSTFQ 482 (562)
Q Consensus 405 ~PDLIHaHywdsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn~AD--~IIaSS~q 482 (562)
++.+|.| .++||+.|..||.++|+|-|...=+........ +..+...+ ...+..+-..|.. .++.+ +++..+-+
T Consensus 60 ~~~~liG-SSLGGyyA~~La~~~g~~aVLiNPAv~P~~~L~-~~ig~~~~-y~~~~~~h~~eL~-~~~p~r~~vllq~gD 135 (180)
T PRK04940 60 ERPLICG-VGLGGYWAERIGFLCGIRQVIFNPNLFPEENME-GKIDRPEE-YADIATKCVTNFR-EKNRDRCLVILSRND 135 (180)
T ss_pred CCcEEEE-eChHHHHHHHHHHHHCCCEEEECCCCChHHHHH-HHhCCCcc-hhhhhHHHHHHhh-hcCcccEEEEEeCCC
Confidence 5778877 489999999999999999999987764322000 00000000 0111222222333 45566 56677777
Q ss_pred HHhcccccccccc
Q 008531 483 EIAGSKDTVGQYE 495 (562)
Q Consensus 483 Ei~~~~~~l~qye 495 (562)
|+-.-++.+..|.
T Consensus 136 EvLDyr~a~~~y~ 148 (180)
T PRK04940 136 EVLDSQRTAEELH 148 (180)
T ss_pred cccCHHHHHHHhc
Confidence 7654444445553
No 145
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=37.73 E-value=4.9e+02 Score=27.10 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=21.8
Q ss_pred CCCCCEEEec----------CcChHHH-HHHHHHhcCCcEEEEe
Q 008531 403 QGKPDLIIGN----------YSDGNIV-ASLLAHKLGVTQCTIA 435 (562)
Q Consensus 403 ~~~PDLIHaH----------ywdsGlV-A~lLArklgVP~V~T~ 435 (562)
..+||||.+- -..||.| |..=|..+|||-+-.-
T Consensus 85 ~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S 128 (253)
T PRK13933 85 PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVS 128 (253)
T ss_pred CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEE
Confidence 4689999874 1345554 4556677899977443
No 146
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=37.72 E-value=99 Score=30.34 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 403 QGKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 403 ~~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
..++|+|.|=-.-|-..|..+|..+++|++..
T Consensus 49 ~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~ 80 (187)
T PRK12560 49 DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMA 80 (187)
T ss_pred CCCCCEEEEEccccHHHHHHHHHhhCCCEEEe
Confidence 45899999977777779999999999998653
No 147
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=37.07 E-value=1.4e+02 Score=33.89 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 393 DVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
++...|.+ ..+|=||-|+.. .+.-....+++++|+|+++|..+-+.... .... +.. ..-..+
T Consensus 205 ~~~~~L~~--AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e--~hpl---------~~G--~~~~~~ 269 (569)
T PRK09259 205 RALDLLKK--AKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPD--THPQ---------SAA--AARSLA 269 (569)
T ss_pred HHHHHHHh--CCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCC--CChh---------hhh--HHHHHH
Confidence 44455533 458989888763 33455667999999999999987443211 1000 000 122356
Q ss_pred HhhCCEEEecC
Q 008531 470 MNHTDFIITST 480 (562)
Q Consensus 470 mn~AD~IIaSS 480 (562)
+++||+||+-.
T Consensus 270 l~~aDlvl~lG 280 (569)
T PRK09259 270 LANADVVLLVG 280 (569)
T ss_pred HhcCCEEEEeC
Confidence 88999999844
No 148
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=36.59 E-value=87 Score=29.87 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=26.7
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
..+|+|.+-..-|-..|..+++.+++|.+..-
T Consensus 45 ~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~ 76 (169)
T TIGR01090 45 ANIDYIVGPEARGFIFGAALAYKLGVGFVPVR 76 (169)
T ss_pred CCCCEEEeehhccHHHHHHHHHHHCCCEEEEE
Confidence 36899999877777899999999999987543
No 149
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=35.29 E-value=1.4e+02 Score=30.25 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCCEEEecCc-C---------hHHHHHHHHHhcCCcE
Q 008531 404 GKPDLIIGNYS-D---------GNIVASLLAHKLGVTQ 431 (562)
Q Consensus 404 ~~PDLIHaHyw-d---------sGlVA~lLArklgVP~ 431 (562)
.+||+|-.||. + .+.++..+.+..+++.
T Consensus 108 ~~P~~V~t~~~~d~~~HpDH~~~~~~~~~a~~~~~~~~ 145 (237)
T COG2120 108 LRPDVVFTPYPDDGYGHPDHRATHEAAKAAVRTAGIPL 145 (237)
T ss_pred hCCCEEEecCCCCCCCCCChHHHHHHHHHHHHhccccc
Confidence 58998888875 4 2446666666666666
No 150
>PLN02293 adenine phosphoribosyltransferase
Probab=35.29 E-value=1e+02 Score=30.43 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.0
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
.++|+|.+=-.-|-..|..+|..+|+|++..
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3689999976777779999999999998753
No 151
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=34.58 E-value=96 Score=31.05 Aligned_cols=54 Identities=28% Similarity=0.377 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCC-c--EEEEecCC
Q 008531 384 WPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGV-T--QCTIAHAL 438 (562)
Q Consensus 384 ~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgV-P--~V~T~HSL 438 (562)
|.......+.++++|.+ -+.+||+|.|=-=-|-..|..|+..||+ | .+.+.|-.
T Consensus 9 w~~I~~~~~~lA~kI~~-s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~ 65 (192)
T COG2236 9 WEEIHRLCRALAEKIRA-SGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYD 65 (192)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEeh
Confidence 66777788888888865 3789999999644444588999999998 3 34445533
No 152
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=33.29 E-value=1.6e+02 Score=25.64 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 384 WPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 384 ~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
|..+...++.+.+.+.+ ...++|.|.+=-.-|-..|..+++.+++|.+...
T Consensus 7 ~~~~~~~~~~la~~i~~-~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~ 57 (125)
T PF00156_consen 7 PEQIEALAERLAEQIKE-SGFDFDVIVGIPRGGIPLAAALARALGIPLVFVR 57 (125)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEE
T ss_pred HHHHHHHHHHHHHHHHH-hCCCCCEEEeehhccHHHHHHHHHHhCCCcccee
Confidence 45566677777777754 3678899998776666799999999999988765
No 153
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=33.19 E-value=1.7e+02 Score=30.48 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHH
Q 008531 312 ALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYT 391 (562)
Q Consensus 312 ALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa 391 (562)
..+..+++.|...|+ +-. -+++|..|.+|+ ||..+. --|.-+..|+
T Consensus 134 ~~A~~~r~~L~~lgL----~~f------------------~KTSG~kGlHV~-vPl~~~-----------~~~~~~r~fa 179 (245)
T TIGR02778 134 EAAQLIRELLDELGL----ESF------------------VKTSGGKGLHVY-VPLRPT-----------LSWDEVKDFA 179 (245)
T ss_pred HHHHHHHHHHHHcCC----ccc------------------eEccCCCeEEEE-EECCCC-----------CCHHHHHHHH
Confidence 334445567888899 212 234455688887 788764 1256677888
Q ss_pred HHHHHHHHHHcCCCCCEEEe
Q 008531 392 EDVAVEIAKELQGKPDLIIG 411 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHa 411 (562)
+.+.+++.++ .||++-+
T Consensus 180 ~~iA~~l~~~---~Pd~~t~ 196 (245)
T TIGR02778 180 KALAQALAQQ---MPDRFTA 196 (245)
T ss_pred HHHHHHHHHH---Cchhhhh
Confidence 8888888553 6776543
No 154
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.07 E-value=40 Score=31.28 Aligned_cols=32 Identities=38% Similarity=0.697 Sum_probs=27.2
Q ss_pred HHhhcCCcccc----CCcHHHHHHHHHHHHHhhcCC
Q 008531 230 RFQEIGLERGW----GDTAERALEMIQLLLDLLEAP 261 (562)
Q Consensus 230 ~~~~~g~e~gw----g~~a~rv~e~~~~l~~~l~ap 261 (562)
+||+|||..-| |.+|+-|-|++.-+.|-+-+|
T Consensus 25 EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~ 60 (119)
T COG3171 25 EFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAP 60 (119)
T ss_pred HHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHcc
Confidence 59999999999 778999999998877766663
No 155
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.06 E-value=1.4e+02 Score=33.11 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCCCEEEecC-cChHHHHHHHHHhcCCcEEEEecCC
Q 008531 403 QGKPDLIIGNY-SDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 403 ~~~PDLIHaHy-wdsGlVA~lLArklgVP~V~T~HSL 438 (562)
..+||+|-.|. ..+.++|+++|...+||++|.-=|+
T Consensus 90 ~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl 126 (383)
T COG0381 90 EEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL 126 (383)
T ss_pred hhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc
Confidence 35899998886 7888899999999999999887664
No 156
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=31.51 E-value=1.9e+02 Score=29.93 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=28.3
Q ss_pred ecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEE
Q 008531 354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLII 410 (562)
Q Consensus 354 i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIH 410 (562)
+.|..|++|+ ||..+. --|.-+..|++.+.+.+.+ ..||++-
T Consensus 142 TSG~kGlHV~-vPl~~~-----------~~~~~vr~fa~~~A~~l~~---~~P~~~t 183 (231)
T cd04863 142 TSGSKGLHLY-VPLDGP-----------VSSDQTKEFAKALARELER---EHPDLVV 183 (231)
T ss_pred CCCCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHH---HCchhhh
Confidence 4455689987 888874 1256677888888888855 2577653
No 157
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=31.06 E-value=6.1e+02 Score=26.16 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYG 356 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~ 356 (562)
||||+....|+.+ -.++-|+++|.+ .| +|.|+.+....+ |....-. +
T Consensus 1 M~ILltNDDGi~a--------------~Gi~aL~~~l~~--------~g-----~V~VvAP~~~~S-g~g~ait---~-- 47 (244)
T TIGR00087 1 MKILLTNDDGIHS--------------PGIRALYQALKE--------LG-----EVTVVAPARQRS-GTGHSLT---L-- 47 (244)
T ss_pred CeEEEECCCCCCC--------------HhHHHHHHHHHh--------CC-----CEEEEeCCCCcc-ccccCcC---C--
Confidence 6899998877643 467777777765 55 488888754332 2211111 1
Q ss_pred CCCcEEEEecCCCCCcccccccCccCchHH-HHHHHHHHHHHHHHHcCCCCCEEEec---------C-cChHH-HHHHHH
Q 008531 357 TKYSDILRVPFRTEKGVVRKWISRFEVWPY-LETYTEDVAVEIAKELQGKPDLIIGN---------Y-SDGNI-VASLLA 424 (562)
Q Consensus 357 ~~gv~I~RVP~~~~~~~~~~~isr~~l~py-Le~fa~~~~~~i~~~~~~~PDLIHaH---------y-wdsGl-VA~lLA 424 (562)
...+++.+++.... . .+.. .+--|- +-.++ +..+ +..+||||.+- + ..||. .|.+-|
T Consensus 48 ~~pl~~~~~~~~~~--~--~~~~-v~GTPaDcv~~g---l~~l---~~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea 116 (244)
T TIGR00087 48 FEPLRVGQVKVKNG--A--HIYA-VDGTPTDCVILG---INEL---MPEVPDLVISGINAGENLGTDVTYSGTVGAAMEA 116 (244)
T ss_pred CCCeEEEEeccCCC--c--cEEE-EcCcHHHHHHHH---HHHh---ccCCCCeEEeccccCCCCCccEecchhHHHHHHH
Confidence 12455666553111 0 0100 011121 11111 1222 24579999864 1 24455 445566
Q ss_pred HhcCCcEEEEec
Q 008531 425 HKLGVTQCTIAH 436 (562)
Q Consensus 425 rklgVP~V~T~H 436 (562)
..+|||-+-.-.
T Consensus 117 ~~~GipaiA~S~ 128 (244)
T TIGR00087 117 AIHGVPAIAISL 128 (244)
T ss_pred HHcCCCeEEEEe
Confidence 778999775544
No 158
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=30.57 E-value=2.8e+02 Score=27.20 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEec
Q 008531 387 LETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 387 Le~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~H 436 (562)
+......+.+.+.. ....+|+|.|=-.-|-..|..+|+.+++|+++...
T Consensus 47 ~~~~~~~la~~i~~-~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk 95 (202)
T PRK00455 47 LALLGRFLAEAIKD-SGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRK 95 (202)
T ss_pred HHHHHHHHHHHHHh-cCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEec
Confidence 34455555555533 23479999986666777899999999999988754
No 159
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=29.84 E-value=29 Score=28.39 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=26.4
Q ss_pred ccccccchHHHH---HHHHHHhHHHHHHHHHHHHhcCCC
Q 008531 5 ALTRVHSLRERL---DETLSAHRNEILALLSRIEGKGKG 40 (562)
Q Consensus 5 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 40 (562)
.+.|+++|...+ +....-...+|.+||.+.++.||=
T Consensus 13 ~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L 51 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKL 51 (60)
T ss_dssp EHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcE
Confidence 578999998888 344466678999999999998873
No 160
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=29.38 E-value=2.2e+02 Score=32.16 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLI 468 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~ 468 (562)
+++.+.|.+ ..+|=||-++.. .+.-.-..+++++|+|+++|..+-+.....+ .. ..- .+-..
T Consensus 197 ~~~~~~L~~--AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~h----------p~--~~g-~~~~~ 261 (554)
T TIGR03254 197 DRAVELLKD--AKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTH----------PQ--SAA-AARSF 261 (554)
T ss_pred HHHHHHHHh--CCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCC----------ch--hhh-HHHHH
Confidence 345555543 458988888863 3445566789999999999998744222100 00 000 11234
Q ss_pred HHhhCCEEEecC
Q 008531 469 AMNHTDFIITST 480 (562)
Q Consensus 469 amn~AD~IIaSS 480 (562)
++++||+||+..
T Consensus 262 ~~~~aDlvl~lG 273 (554)
T TIGR03254 262 ALAEADVVMLVG 273 (554)
T ss_pred HHhcCCEEEEEC
Confidence 789999999854
No 161
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=29.38 E-value=2.2e+02 Score=29.36 Aligned_cols=43 Identities=21% Similarity=0.489 Sum_probs=28.8
Q ss_pred ecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEe
Q 008531 354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIG 411 (562)
Q Consensus 354 i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHa 411 (562)
++|..|.+|+ ||..+. --|.-...|++.+.+.+.++ .||++-+
T Consensus 138 TSG~kGlHV~-vPl~~~-----------~~~~~~r~fa~~lA~~l~~~---~P~~~t~ 180 (227)
T cd04862 138 TSGGKGLHVV-VPLAPR-----------AGWDEVKAFAKALAQHLART---NPDRFVA 180 (227)
T ss_pred ccCCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHHH---CchhhhH
Confidence 4445688887 788764 12666778888888888553 5776543
No 162
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=28.67 E-value=2.2e+02 Score=27.27 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=26.0
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
..+|+|.+=-.-|-..|..+|+.+++|++..
T Consensus 50 ~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 50 ADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred CCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 3699999976666679999999999999864
No 163
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=27.84 E-value=3.3e+02 Score=26.73 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 386 YLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 386 yLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
.+...+..+.+.+.. ...++|+|.+=-.-|-..|..+|+.+++|+++.
T Consensus 40 ~~~~~~~~La~~i~~-~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~ 87 (187)
T TIGR01367 40 ALMELGGELAQKILD-YGLKVDFIVGPAMGGVILGYEVARQLSVRSIFA 87 (187)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEE
Confidence 456667777777733 345899999976667778999999999998754
No 164
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=27.82 E-value=1.4e+02 Score=28.45 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhcCCcEEEEec
Q 008531 384 WPYLETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKLGVTQCTIAH 436 (562)
Q Consensus 384 ~pyLe~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArklgVP~V~T~H 436 (562)
|..+..-++.+..++.+. ++||+|.|=---|-..|..|++.+++|.+-+.|
T Consensus 12 ~~~i~~~i~~la~~I~~~--~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~ 62 (156)
T PRK09177 12 WDQLHRDARALAWRLLPA--GQWKGIIAVTRGGLVPAAILARELGIRLVDTVC 62 (156)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCEEEEEecCCeehHHHHHHHcCCCceeEEE
Confidence 445555566666666442 379999986444444899999999999865544
No 165
>PLN03004 UDP-glycosyltransferase
Probab=27.65 E-value=5.4e+02 Score=28.80 Aligned_cols=119 Identities=13% Similarity=0.012 Sum_probs=56.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEecCCCCC-CC-CcccccceeecCCCCcEEEEecCCCCCccccc
Q 008531 301 GQVVYILDQVRALEDEMLLRIKQQG--LDITPQILIITRLLPDA-VG-TTCGQRLEKVYGTKYSDILRVPFRTEKGVVRK 376 (562)
Q Consensus 301 GqvvYVldlarALe~~l~~~l~~~G--h~~~~~V~V~TR~~~~~-~g-t~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~ 376 (562)
|+++-.+++|+.|+. .| + .|.|++-..+.. .- ....+.. ....++++++.+|++...+- .
T Consensus 15 GHi~P~l~LA~~La~--------~g~~~----~vti~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~lp~~~~~~~--~ 78 (451)
T PLN03004 15 GHLVSMVELGKTILS--------KNPSL----SIHIILVPPPYQPESTATYISSV--SSSFPSITFHHLPAVTPYSS--S 78 (451)
T ss_pred chHHHHHHHHHHHHh--------CCCce----EEEEEEecCcchhhhhhhhhccc--cCCCCCeEEEEcCCCCCCCC--c
Confidence 788889989998886 67 4 466543222110 00 0000010 11123688888887642100 0
Q ss_pred ccCccCchHHHH----HHHHHHHHHHHHHcCCC-CCEEEecCcChHHHHHHHHHhcCCcEEEEecCC
Q 008531 377 WISRFEVWPYLE----TYTEDVAVEIAKELQGK-PDLIIGNYSDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 377 ~isr~~l~pyLe----~fa~~~~~~i~~~~~~~-PDLIHaHywdsGlVA~lLArklgVP~V~T~HSL 438 (562)
.-...+.-.++. .....+.+.+.+....+ ++.|.+-...+ .+..+|+++|||.+ .+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~--Wa~~vA~~lgIP~v-~F~t~ 142 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCT--AVLDITADFTFPVY-FFYTS 142 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcch--hHHHHHHHhCCCEE-EEeCH
Confidence 001111112221 22222333332211223 37787754332 67889999999954 55543
No 166
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=27.56 E-value=2.5e+02 Score=28.99 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHH
Q 008531 314 EDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTED 393 (562)
Q Consensus 314 e~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~ 393 (562)
+..+++.|...|+ .-.+ +++|..|.+|+ ||..+. --|.-...|++.
T Consensus 120 A~~vr~~L~~lgL----~~f~------------------KTSG~kGlHV~-vPl~~~-----------~~~~~~r~fa~~ 165 (227)
T cd04861 120 ALLLRELLDELGL----ESFP------------------KTSGGKGLHVY-VPLAPR-----------YTWDEVRAFAKA 165 (227)
T ss_pred HHHHHHHHHHcCC----ccce------------------EccCCCeEEEE-EEcCCC-----------CCHHHHHHHHHH
Confidence 3445567888899 2222 33445588887 787764 126667888888
Q ss_pred HHHHHHHHcCCCCCEEEec
Q 008531 394 VAVEIAKELQGKPDLIIGN 412 (562)
Q Consensus 394 ~~~~i~~~~~~~PDLIHaH 412 (562)
+.+.+.+ ..||++-+.
T Consensus 166 iA~~l~~---~~P~~~t~~ 181 (227)
T cd04861 166 LARELAR---RLPDLFTAE 181 (227)
T ss_pred HHHHHHH---HCchhhhhH
Confidence 8888855 357765443
No 167
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=27.55 E-value=2.4e+02 Score=28.98 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred ecCCCCcEEEEecCC-CCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEe
Q 008531 354 VYGTKYSDILRVPFR-TEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIG 411 (562)
Q Consensus 354 i~~~~gv~I~RVP~~-~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHa 411 (562)
++|..|.+|+ ||.. +. .-|.-+..|++.+.+++.++ .||++-+
T Consensus 133 TSG~kGlHV~-vPl~~~~-----------~~~~~~r~fa~~iA~~l~~~---~P~~~t~ 176 (223)
T cd04866 133 TSGNKGLQVY-IPLPDNK-----------FTYDETRLFTEFIAEYLCQQ---FPELFTT 176 (223)
T ss_pred ccCCCeEEEE-EEcCCCC-----------CCHHHHHHHHHHHHHHHHHH---CchhhhH
Confidence 4455689987 7887 53 12666788888888888543 5776543
No 168
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=27.51 E-value=1.6e+02 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
..+|+|-+=-..|-..|..+|+.+|+|+|+.=
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred CCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 46999998767777789999999999999863
No 169
>PRK07524 hypothetical protein; Provisional
Probab=27.14 E-value=2.1e+02 Score=32.15 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAM 470 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~am 470 (562)
+.+.+.|.+ ..+|=|+-|+.. .+.-....+++++++|++.|.++-+..-..+ ..+ - . ... +.. .-..++
T Consensus 192 ~~~~~~L~~--AkrPvil~G~g~~~a~~~l~~lae~l~~pV~tt~~~kg~~p~~h-p~~-~--G-~~~-~~~--~~~~~~ 261 (535)
T PRK07524 192 AQAAERLAA--ARRPLILAGGGALAAAAALRALAERLDAPVALTINAKGLLPAGH-PLL-L--G-ASQ-SLP--AVRALI 261 (535)
T ss_pred HHHHHHHHh--CCCcEEEECCChHHHHHHHHHHHHHHCCCEEEcccccccCCCCC-hhh-c--c-CCC-CCH--HHHHHH
Confidence 345555533 457888877763 4555666799999999999998754321110 000 0 0 000 111 123357
Q ss_pred hhCCEEEecC
Q 008531 471 NHTDFIITST 480 (562)
Q Consensus 471 n~AD~IIaSS 480 (562)
.+||+||+..
T Consensus 262 ~~aDlvl~vG 271 (535)
T PRK07524 262 AEADVVLAVG 271 (535)
T ss_pred HhCCEEEEeC
Confidence 8999999964
No 170
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=26.91 E-value=2.6e+02 Score=28.88 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=29.5
Q ss_pred ecCCCCcEEEEecCCCCCcccccccCccCchHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 008531 354 VYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETYTEDVAVEIAKELQGKPDLIIGN 412 (562)
Q Consensus 354 i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~fa~~~~~~i~~~~~~~PDLIHaH 412 (562)
++|..|.+|+ ||..+. --|.-+..|++.+.+.+.+ ..||++-+.
T Consensus 139 TSG~kGlHv~-vPl~~~-----------~~~~~~r~fa~~iA~~l~~---~~P~~~t~~ 182 (228)
T cd04865 139 TSGARGLHIY-VPIAPR-----------YTFEEVRRFAELLAREVER---RLPDLATTE 182 (228)
T ss_pred ccCCCeEEEE-EEcCCC-----------CCHHHHHHHHHHHHHHHHH---HCchhhhhH
Confidence 4445588887 788764 1256677888888888854 367776544
No 171
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.90 E-value=3e+02 Score=30.74 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=21.6
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
.+||++.+|.+. ..+|+++|||++-..
T Consensus 394 ~~pDllig~~~~-----~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 394 YKPDIILTGIRE-----GELAKKLGVPYINIH 420 (457)
T ss_pred cCCCEEEecCCc-----chhhhhcCCCEEEcc
Confidence 489999999863 457789999998753
No 172
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=26.75 E-value=2.6e+02 Score=28.85 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCCCcccccccCccCchHHHHHH
Q 008531 311 RALEDEMLLRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTEKGVVRKWISRFEVWPYLETY 390 (562)
Q Consensus 311 rALe~~l~~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~~~~~~~~isr~~l~pyLe~f 390 (562)
...+..+++.|...|+ .-. -+++|..|.+|+ ||..+. --|.-...|
T Consensus 118 ~~~A~~~r~~L~~~gL----~~f------------------~KTSG~kGlHv~-vPl~~~-----------~~~~~~r~f 163 (228)
T cd04864 118 RTAALAVRELLDELGL----PSF------------------VKTTGSRGFHVV-VPLDGR-----------GDFDDVRAF 163 (228)
T ss_pred HHHHHHHHHHHHHcCC----ccc------------------eEccCCCeEEEE-EEcCCC-----------CCHHHHHHH
Confidence 3344455667888899 222 234445688887 788764 125667788
Q ss_pred HHHHHHHHHHHcCCCCCEEEe
Q 008531 391 TEDVAVEIAKELQGKPDLIIG 411 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHa 411 (562)
++.+.+.+.+ ..||++-+
T Consensus 164 a~~lA~~l~~---~~P~~~t~ 181 (228)
T cd04864 164 AAEAADALAK---RDPDLLTT 181 (228)
T ss_pred HHHHHHHHHH---HCchhhhH
Confidence 8888888854 36776533
No 173
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=26.02 E-value=8e+02 Score=25.89 Aligned_cols=37 Identities=8% Similarity=0.169 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCC
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLP 340 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~ 340 (562)
|||++..-.|+.+ ..+.-|+++|.+ .| +|.|+.+...
T Consensus 1 M~ILlTNDDGi~a--------------pGi~aL~~al~~--------~g-----~V~VvAP~~e 37 (266)
T PRK13934 1 MKILVTNDDGVHS--------------PGLRLLYEFVSP--------LG-----EVDVVAPETP 37 (266)
T ss_pred CeEEEEcCCCCCC--------------HHHHHHHHHHHh--------CC-----cEEEEccCCC
Confidence 6899998887643 357767777754 45 4888876543
No 174
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.61 E-value=3.5e+02 Score=30.71 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCC
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe 439 (562)
.+++.+.|.+ ..+|=||-|+.. .+.-....+++++|+|+++|..+-+
T Consensus 196 i~~a~~~L~~--A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg 245 (574)
T PRK07979 196 IKRALQTLVA--AKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLG 245 (574)
T ss_pred HHHHHHHHHc--CCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCC
Confidence 3445555543 458988888863 3344556799999999999988744
No 175
>PLN02207 UDP-glycosyltransferase
Probab=25.59 E-value=7.9e+02 Score=27.71 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhCC--CCCCCeEEEEecCCCCCCCCcccccceee-cCCCCcEEEEecCCCCCccccc
Q 008531 300 GGQVVYILDQVRALEDEMLLRIKQQG--LDITPQILIITRLLPDAVGTTCGQRLEKV-YGTKYSDILRVPFRTEKGVVRK 376 (562)
Q Consensus 300 GGqvvYVldlarALe~~l~~~l~~~G--h~~~~~V~V~TR~~~~~~gt~~~q~~E~i-~~~~gv~I~RVP~~~~~~~~~~ 376 (562)
-|+..-.+++|+.|+. .| . .|.|+|...+-.. .-...+..+ ...++++++-+|.++..+-. .
T Consensus 14 qGHi~P~l~lA~~La~--------~gg~~----~vT~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 78 (468)
T PLN02207 14 VGHLVPFLEFARRLIE--------QDDRI----RITILLMKLQGQS--HLDTYVKSIASSQPFVRFIDVPELEEKPTL-G 78 (468)
T ss_pred hhhHHHHHHHHHHHHh--------CCCCe----EEEEEEcCCCcch--hhHHhhhhccCCCCCeEEEEeCCCCCCCcc-c
Confidence 4788899988888876 67 7 7888876432100 000001100 11135888888854321000 0
Q ss_pred ccCccCchHHHHHHHHHH-------HHHHHHHc--CCCC-CEEEecCcChHHHHHHHHHhcCCcEEEEecCC
Q 008531 377 WISRFEVWPYLETYTEDV-------AVEIAKEL--QGKP-DLIIGNYSDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 377 ~isr~~l~pyLe~fa~~~-------~~~i~~~~--~~~P-DLIHaHywdsGlVA~lLArklgVP~V~T~HSL 438 (562)
...+...++..+...+ ...+.+.. +.+| +.|.+-... ..+.-+|+++|||. ..+++.
T Consensus 79 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~--~w~~~vA~~~gip~-~~f~~~ 145 (468)
T PLN02207 79 --GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFC--LPMIDVAKDVSLPF-YVFLTT 145 (468)
T ss_pred --cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcc--hHHHHHHHHhCCCE-EEEECc
Confidence 0122333332222211 22222211 1244 677776543 26888999999995 455544
No 176
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.54 E-value=3.4e+02 Score=26.88 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCC
Q 008531 320 RIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTE 370 (562)
Q Consensus 320 ~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~ 370 (562)
.|++.|. +|+|+.-..........-.-.+.++..++++.++||.++.
T Consensus 131 ~lkk~~I----~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~~~ 177 (187)
T cd01452 131 RLKKNNV----SVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPGEN 177 (187)
T ss_pred HHHHcCC----eEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCCCc
Confidence 4555899 8999986544321111101123355556899999999874
No 177
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=25.52 E-value=2e+02 Score=28.10 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHH
Q 008531 387 LETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAH 425 (562)
Q Consensus 387 Le~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLAr 425 (562)
++.-.+.+.+.+.+ .+.+|-|-| ||-|+.+|..|..
T Consensus 86 ~~~sl~~l~~~i~~--~GPfdGvlG-FSQGA~lAa~ll~ 121 (212)
T PF03959_consen 86 LDESLDYLRDYIEE--NGPFDGVLG-FSQGAALAALLLA 121 (212)
T ss_dssp -HHHHHHHHHHHHH--H---SEEEE-ETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCeEEEEe-ecHHHHHHHHHHH
Confidence 44444455566644 357899999 7777776666553
No 178
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=25.22 E-value=2.5e+02 Score=30.88 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=21.4
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEE
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTI 434 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T 434 (562)
.+||+|.|+.+ +..+|+++|||++..
T Consensus 371 ~~~dliiG~s~-----~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSY-----GRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECch-----hHHHHHHcCCCEEEe
Confidence 58999999876 457888999998855
No 179
>PRK12342 hypothetical protein; Provisional
Probab=24.96 E-value=1.1e+02 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=29.7
Q ss_pred CCCEEEecC----cChHHHHHHHHHhcCCcEEEEecCCC
Q 008531 405 KPDLIIGNY----SDGNIVASLLAHKLGVTQCTIAHALE 439 (562)
Q Consensus 405 ~PDLIHaHy----wdsGlVA~lLArklgVP~V~T~HSLe 439 (562)
.||||-+-- .++|.++..+|..+|+|++..+-.++
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~~~ 147 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQ 147 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEEEE
Confidence 599999873 47789999999999999998877653
No 180
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.58 E-value=1.2e+02 Score=31.56 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCCEEEecC----cChHHHHHHHHHhcCCcEEEEecCC
Q 008531 405 KPDLIIGNY----SDGNIVASLLAHKLGVTQCTIAHAL 438 (562)
Q Consensus 405 ~PDLIHaHy----wdsGlVA~lLArklgVP~V~T~HSL 438 (562)
.||||-+-- .++|.++..+|..+|+|++..+-.+
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 599999873 5788899999999999998777554
No 181
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=24.46 E-value=3.4e+02 Score=30.41 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCCEEEecCcChHHHHHHHHHhcCCcEEEEe
Q 008531 404 GKPDLIIGNYSDGNIVASLLAHKLGVTQCTIA 435 (562)
Q Consensus 404 ~~PDLIHaHywdsGlVA~lLArklgVP~V~T~ 435 (562)
.+||+|.++.+ +..+++++|||+|-..
T Consensus 392 ~~pDliig~s~-----~~~~a~k~giP~~~~~ 418 (475)
T PRK14478 392 AKADIMLSGGR-----SQFIALKAGMPWLDIN 418 (475)
T ss_pred cCCCEEEecCc-----hhhhhhhcCCCEEEcc
Confidence 58999999844 4567889999998543
No 182
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=24.16 E-value=4.5e+02 Score=30.26 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLI 468 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~ 468 (562)
+.+.+.|.+ ..+|=|+-|+.. .+.-....+|+++|+|++.|..+-+.....+ ..+-... .....+. -..
T Consensus 215 ~~~~~~L~~--AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~h-pl~~G~~---G~~g~~~--~~~ 286 (616)
T PRK07418 215 NAALKLIEE--AERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHH-PLSVGML---GMHGTAY--ANF 286 (616)
T ss_pred HHHHHHHHh--CCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCC-cccccCC---CCCCCHH--HHH
Confidence 345555533 457877777653 3444555799999999999998755332111 0000000 0011121 123
Q ss_pred HHhhCCEEEecC
Q 008531 469 AMNHTDFIITST 480 (562)
Q Consensus 469 amn~AD~IIaSS 480 (562)
++.+||+||+..
T Consensus 287 ~l~~aDlvL~vG 298 (616)
T PRK07418 287 AVTECDLLIAVG 298 (616)
T ss_pred HHHhCCEEEEEc
Confidence 688999999854
No 183
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.86 E-value=6.5e+02 Score=24.14 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=54.0
Q ss_pred ccCCcHHHHHHHHHHHHHhhcCCCcCchhHHhcCCCccceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 008531 239 GWGDTAERALEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEML 318 (562)
Q Consensus 239 gwg~~a~rv~e~~~~l~~~l~ap~p~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~ 318 (562)
+||+.....-+.++.+.++.+ -+|+ +-.-||+++-+-.|+... +.. +++..|. +.+
T Consensus 22 ~~~~~~k~~a~~~E~~~~l~~-----~lEr-----qfKGRv~l~P~~~Y~~~~------~~~-------~~~~~L~-~w~ 77 (142)
T PF10673_consen 22 DFGEDMKEAASQGEFLRLLAD-----ELER-----QFKGRVLLFPAFTYLKEE------DEE-------ELVERLN-DWC 77 (142)
T ss_pred CccccHHHHHHHHHHHHHHHH-----HHHH-----hcCceEEecCCeeeeccc------chh-------HHHHHHH-HHH
Confidence 347777777777777777765 5664 333468888776665311 111 1222333 467
Q ss_pred HHHHhCCCCCCCeEEEEecCCCCCCCCcccccceeecCCCCcEEEEecCCCC
Q 008531 319 LRIKQQGLDITPQILIITRLLPDAVGTTCGQRLEKVYGTKYSDILRVPFRTE 370 (562)
Q Consensus 319 ~~l~~~Gh~~~~~V~V~TR~~~~~~gt~~~q~~E~i~~~~gv~I~RVP~~~~ 370 (562)
..|++.|-. .|.++|. |..+. .. +.. +..++-+|+.|-
T Consensus 78 ~~l~~~GFk---hV~~lT~---D~~Wk-~~---~~~----~~~liwlPaipL 115 (142)
T PF10673_consen 78 EELKESGFK---HVFYLTS---DSEWK-QE---EEL----EGSLIWLPAIPL 115 (142)
T ss_pred HHHHhcCCc---EEEEEec---Ccccc-cc---cCC----CCcEEEEeCccc
Confidence 788889984 7888885 23222 11 112 344666888775
No 184
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=23.74 E-value=67 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcCCCcCchhHHhcCCC
Q 008531 245 ERALEMIQLLLDLLEAPDPCTLETFLGRIP 274 (562)
Q Consensus 245 ~rv~e~~~~l~~~l~ap~p~~le~f~~r~p 274 (562)
.|.++++.-|.|+++.||-..|+.|++|..
T Consensus 24 dkFldSf~el~dv~~~~d~DelmdFIsryA 53 (110)
T PF11513_consen 24 DKFLDSFKELIDVITSPDIDELMDFISRYA 53 (110)
T ss_dssp HHHHHHHHHHHHHTTS--CCHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHhh
Confidence 578899999999999999999999999874
No 185
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=23.73 E-value=3.2e+02 Score=31.09 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHH
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIA 469 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~a 469 (562)
.+.+.+.|.+ ..+|=|+-++-. .+.-....+++++|+|+++|..+-+.....+ ..+-... ......-. ..+
T Consensus 190 v~~~~~~L~~--AkrPvil~G~g~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~h-pl~~G~~---g~~~~~~~--~~~ 261 (575)
T TIGR02720 190 VTRAVQTLKA--AERPVIYYGIGARKAGEELEALSEKLKIPLISTGLAKGIIEDRY-PAYLGSA---YRVAQKPA--NEA 261 (575)
T ss_pred HHHHHHHHHc--CCCcEEEECcchhhHHHHHHHHHHHhCCCEEEcccccccCCCCC-cccccCC---cCCCcHHH--HHH
Confidence 3445555533 458988888863 4455667799999999999998744221110 0000000 00111111 236
Q ss_pred HhhCCEEEecCH
Q 008531 470 MNHTDFIITSTF 481 (562)
Q Consensus 470 mn~AD~IIaSS~ 481 (562)
++.||+||+...
T Consensus 262 l~~aDlvl~vG~ 273 (575)
T TIGR02720 262 LFQADLVLFVGN 273 (575)
T ss_pred HHhCCEEEEeCC
Confidence 789999998643
No 186
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.70 E-value=4.2e+02 Score=27.17 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCCCEEEecC--cChHHHHHHHHHhcCCcEEEEecC
Q 008531 404 GKPDLIIGNY--SDGNIVASLLAHKLGVTQCTIAHA 437 (562)
Q Consensus 404 ~~PDLIHaHy--wdsGlVA~lLArklgVP~V~T~HS 437 (562)
..+|-|---. ..+.-+.-.+-+++|+|++.+..+
T Consensus 180 ~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqa 215 (239)
T TIGR02990 180 PDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQA 215 (239)
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHH
Confidence 3567665544 345556777888999999977765
No 187
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=23.49 E-value=3e+02 Score=31.57 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCCCEEEecC-cChH--HHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNY-SDGN--IVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLI 468 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHy-wdsG--lVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~ 468 (562)
+++.+.|.+ ..+|=|+-|.. +.++ -....+++++++|+++|.-+.+..-..+ ..+-.... .+ .. .+-..
T Consensus 191 ~~aa~~L~~--AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~h-p~~lG~~g--~~--g~-~~a~~ 262 (550)
T COG0028 191 RKAAELLAE--AKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDH-PLSLGMLG--MH--GT-KAANE 262 (550)
T ss_pred HHHHHHHHh--CCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCC-cccccccc--cc--cc-HHHHH
Confidence 345555533 34788888775 4444 6778899999999999998876442211 01100110 11 11 23456
Q ss_pred HHhhCCEEEecCH
Q 008531 469 AMNHTDFIITSTF 481 (562)
Q Consensus 469 amn~AD~IIaSS~ 481 (562)
++.+||.||+...
T Consensus 263 ~~~~aDlll~vG~ 275 (550)
T COG0028 263 ALEEADLLLAVGA 275 (550)
T ss_pred HhhcCCEEEEecC
Confidence 7999999999654
No 188
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=23.37 E-value=1.4e+02 Score=28.61 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEecCcChHHHHHHHHHhc---CC--cEEEEecC
Q 008531 388 ETYTEDVAVEIAKELQGKPDLIIGNYSDGNIVASLLAHKL---GV--TQCTIAHA 437 (562)
Q Consensus 388 e~fa~~~~~~i~~~~~~~PDLIHaHywdsGlVA~lLArkl---gV--P~V~T~HS 437 (562)
+.++....+.|++.....|-++-| |+.||.+|..+|+++ |. ..|+..=+
T Consensus 49 ~~la~~y~~~I~~~~~~gp~~L~G-~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 49 EELASRYAEAIRARQPEGPYVLAG-WSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp HHHHHHHHHHHHHHTSSSSEEEEE-ETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred HHHHHHHHHHhhhhCCCCCeeehc-cCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 455566666665543334666666 577999999999987 44 34555543
No 189
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=22.32 E-value=1.6e+02 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.454 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEe
Q 008531 277 FNVVILTPHGYFAQDDVLGYPDTGGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIIT 336 (562)
Q Consensus 277 ~rIliiS~Hg~f~~~~vlG~pDtGGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~T 336 (562)
|||++|+ | +|-.+|... .|.+.+++.+++.|+ +|.++-
T Consensus 1 Mkilii~--g---------S~r~~~~t~-------~l~~~~~~~l~~~g~----e~~~i~ 38 (152)
T PF03358_consen 1 MKILIIN--G---------SPRKNSNTR-------KLAEAVAEQLEEAGA----EVEVID 38 (152)
T ss_dssp -EEEEEE--S---------SSSTTSHHH-------HHHHHHHHHHHHTTE----EEEEEE
T ss_pred CEEEEEE--C---------cCCCCCHHH-------HHHHHHHHHHHHcCC----EEEEEe
Confidence 7999986 2 233344432 333344445667899 888883
No 190
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=22.05 E-value=4.3e+02 Score=30.20 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCCCCEEEecCc---ChHHHHHHHHHhcCCcEEEEecCCCcCcCCC---CcchhcccCcccccchhHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNYS---DGNIVASLLAHKLGVTQCTIAHALEKTKYPD---SDIYWKNLDDKYHFSCQFTA 465 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHyw---dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~---s~~~w~~~e~~y~~s~rf~a 465 (562)
+++.+.|.+ ..+|=||-++.- .+.-....++.++|+|++.|.++-+.....+ .|.. ...+....
T Consensus 208 ~~a~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~~-------G~~~~~~~- 277 (585)
T CHL00099 208 EQAAKLILQ--SSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGML-------GMHGTAYA- 277 (585)
T ss_pred HHHHHHHHc--CCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCCC-------CCCCCHHH-
Confidence 345555533 357888888863 3445566799999999999998855322111 1110 00112221
Q ss_pred HHHHHhhCCEEEecC
Q 008531 466 DLIAMNHTDFIITST 480 (562)
Q Consensus 466 E~~amn~AD~IIaSS 480 (562)
..++.+||+||+..
T Consensus 278 -~~~l~~aDlvL~lG 291 (585)
T CHL00099 278 -NFAVSECDLLIALG 291 (585)
T ss_pred -HHHHHhCCEEEEEC
Confidence 23678999999854
No 191
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=21.77 E-value=3e+02 Score=31.03 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCCCCEEEecCc-ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHHHHh
Q 008531 393 DVAVEIAKELQGKPDLIIGNYS-DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLIAMN 471 (562)
Q Consensus 393 ~~~~~i~~~~~~~PDLIHaHyw-dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~amn 471 (562)
.+.+.|.+ ..+|=||-|... .++-....+|+++|+|++.|.++-+.....+ ..+..... ....+- + ..+++
T Consensus 187 ~~~~~L~~--AkrPvii~G~g~~~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~h-p~~~G~~g---~~~~~~-~-~~~l~ 258 (549)
T PRK06457 187 RAKELIKE--SEKPVLLIGGGTRGLGKEINRFAEKIGAPIIYTLNGKGILPDLD-PKVMGGIG---LLGTKP-S-IEAMD 258 (549)
T ss_pred HHHHHHHc--CCCcEEEECcchhhHHHHHHHHHHHHCCCEEEcccccccCCCCC-hhhccCCC---CCCCHH-H-HHHHH
Confidence 34444532 357888888754 4455566799999999999988765322111 00100000 011111 1 23678
Q ss_pred hCCEEEecC
Q 008531 472 HTDFIITST 480 (562)
Q Consensus 472 ~AD~IIaSS 480 (562)
.||.||+..
T Consensus 259 ~aDlvl~lG 267 (549)
T PRK06457 259 KADLLIMLG 267 (549)
T ss_pred hCCEEEEEC
Confidence 999999854
No 192
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.89 E-value=1.6e+02 Score=27.75 Aligned_cols=28 Identities=21% Similarity=0.515 Sum_probs=17.5
Q ss_pred hHHHHHHhhcCCccccCCc--HHHHHHHHH
Q 008531 225 SELALRFQEIGLERGWGDT--AERALEMIQ 252 (562)
Q Consensus 225 ~~~~~~~~~~g~e~gwg~~--a~rv~e~~~ 252 (562)
.+++.+|+++||....|-+ .+.|.+.+.
T Consensus 100 ~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~ 129 (134)
T TIGR01501 100 PDVEKRFKEMGFDRVFAPGTPPEVVIADLK 129 (134)
T ss_pred HHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence 3345689999988777644 344444443
No 193
>PRK05858 hypothetical protein; Provisional
Probab=20.81 E-value=4.4e+02 Score=29.72 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCCEEEecC-c--ChHHHHHHHHHhcCCcEEEEecCCCcCcCCCCcchhcccCcccccchhHHHHHH
Q 008531 392 EDVAVEIAKELQGKPDLIIGNY-S--DGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKNLDDKYHFSCQFTADLI 468 (562)
Q Consensus 392 ~~~~~~i~~~~~~~PDLIHaHy-w--dsGlVA~lLArklgVP~V~T~HSLe~~Ky~~s~~~w~~~e~~y~~s~rf~aE~~ 468 (562)
+.+.+.|.+ ..+|=|+-++. + .+.-....++.++|+|++.|.-+-+... .. + . ..... .-..
T Consensus 194 ~~~~~~L~~--AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~--~~--------h-p-l~~~~-~~~~ 258 (542)
T PRK05858 194 ARAAGLLAE--AQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVP--AD--------H-P-LAFSR-ARGK 258 (542)
T ss_pred HHHHHHHHh--CCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCC--CC--------C-c-hhhhH-HHHH
Confidence 344555533 35788888875 3 3344556789999999999997632211 10 0 0 00111 1134
Q ss_pred HHhhCCEEEecC
Q 008531 469 AMNHTDFIITST 480 (562)
Q Consensus 469 amn~AD~IIaSS 480 (562)
++++||+||+..
T Consensus 259 ~l~~aD~vl~vG 270 (542)
T PRK05858 259 ALGEADVVLVVG 270 (542)
T ss_pred HHHhCCEEEEEC
Confidence 688999999854
No 194
>PLN00016 RNA-binding protein; Provisional
Probab=20.44 E-value=1.3e+02 Score=31.86 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.4
Q ss_pred HHHhCCCCCCCeEEEEecCC
Q 008531 320 RIKQQGLDITPQILIITRLL 339 (562)
Q Consensus 320 ~l~~~Gh~~~~~V~V~TR~~ 339 (562)
.|.++|| +|.+++|..
T Consensus 75 ~L~~~G~----~V~~l~R~~ 90 (378)
T PLN00016 75 ELVKAGH----EVTLFTRGK 90 (378)
T ss_pred HHHHCCC----EEEEEecCC
Confidence 3444899 999999964
No 195
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.37 E-value=6e+02 Score=26.06 Aligned_cols=29 Identities=34% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecCCC
Q 008531 300 GGQVVYILDQVRALEDEMLLRIKQQGLDITPQILIITRLLP 340 (562)
Q Consensus 300 GGqvvYVldlarALe~~l~~~l~~~Gh~~~~~V~V~TR~~~ 340 (562)
.|++...+-||++|.+ +|+ +|..+|+..+
T Consensus 14 ~GHv~Rcl~LA~~l~~--------~g~----~v~f~~~~~~ 42 (279)
T TIGR03590 14 LGHVMRCLTLARALHA--------QGA----EVAFACKPLP 42 (279)
T ss_pred ccHHHHHHHHHHHHHH--------CCC----EEEEEeCCCC
Confidence 6888888877777755 899 9999998643
No 196
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=20.07 E-value=1.7e+02 Score=25.28 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcCchhHHhcCCCccceEEEEcCCCCCCCCCCCCC---CCCCCch
Q 008531 241 GDTAERALEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILTPHGYFAQDDVLGY---PDTGGQV 303 (562)
Q Consensus 241 g~~a~rv~e~~~~l~~~l~ap~p~~le~f~~r~pm~~rIliiS~Hg~f~~~~vlG~---pDtGGqv 303 (562)
-.+..||.++-+---++-.+++-..|.--|-++|.. |+-.|.+. +..|. |||||-|
T Consensus 11 leCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~-----V~~dG~V~--~LpG~e~FPDt~~~V 69 (74)
T PF12357_consen 11 LECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQ-----VDRDGKVT--PLPGCEFFPDTGGKV 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCccccCCeE-----EcCCCCEe--eCCCCCcCCCCCCcc
Confidence 356788888888888899999998899888898943 55667654 33453 9999976
No 197
>PRK12474 hypothetical protein; Provisional
Probab=20.03 E-value=5.4e+02 Score=28.83 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCEEEecCc-ChH--HHHHHHHHhcCCcEEEE
Q 008531 391 TEDVAVEIAKELQGKPDLIIGNYS-DGN--IVASLLAHKLGVTQCTI 434 (562)
Q Consensus 391 a~~~~~~i~~~~~~~PDLIHaHyw-dsG--lVA~lLArklgVP~V~T 434 (562)
.+.+.+.|.+ ..+|=|+-++.. .++ -....++.++|+|+++|
T Consensus 191 i~~~~~~L~~--A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 191 VERIAALLRN--GKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred HHHHHHHHHc--CCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 3445555643 458988888763 232 33457899999999975
Done!