Query 008532
Match_columns 562
No_of_seqs 313 out of 2233
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 05:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 9.4E-57 3.2E-61 483.2 38.0 416 117-557 27-449 (449)
2 4f35_D Transporter, NADC famil 99.8 1.6E-21 5.3E-26 209.2 10.4 271 32-331 147-449 (449)
3 2bp3_S Platelet glycoprotein I 52.1 3.3 0.00011 23.8 0.1 12 16-27 4-15 (26)
4 2l8s_A Integrin alpha-1; trans 9.3 5.1E+02 0.017 18.2 4.8 23 313-335 17-41 (54)
5 3p87_G Ribonuclease H2 subunit 9.2 59 0.002 18.6 -0.3 15 34-48 5-19 (23)
6 2iub_A CORA, divalent cation t 8.5 1.2E+02 0.0043 30.1 1.6 29 304-333 332-360 (363)
7 4ev6_A Magnesium transport pro 6.6 1.7E+02 0.006 28.7 1.6 22 311-332 314-335 (339)
8 2knc_A Integrin alpha-IIB; tra 5.7 7.9E+02 0.027 17.2 4.5 22 313-334 20-43 (54)
9 3kcu_A Probable formate transp 5.4 1.7E+03 0.059 20.9 16.7 97 153-251 98-208 (285)
10 2l2t_A Receptor tyrosine-prote 5.2 7.7E+02 0.026 16.4 3.8 32 308-339 12-43 (44)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=9.4e-57 Score=483.16 Aligned_cols=416 Identities=17% Similarity=0.258 Sum_probs=355.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHH
Q 008532 117 EVSPQAWQLLSIFLSTIAGLVLSPLPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRI 196 (562)
Q Consensus 117 ~ls~~~~~~l~i~~~~i~lw~~~~~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ri 196 (562)
+.++++++.++++++++++|++|++|..++|+++++++.++|++++||++++|+++++++++++++++.+++|||++||+
T Consensus 27 p~~~~~~~~lai~~~~~~lw~te~iP~~vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~ri 106 (449)
T 4f35_D 27 PFEHNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVI 106 (449)
T ss_dssp CSTTHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhc
Q 008532 197 ATYFVKWLGKSTLGLSYGLTFSEALIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSS 276 (562)
Q Consensus 197 a~~i~~~~g~~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g 276 (562)
|++++++.|++++++.+++++++.++|.+++|+++ + +++.|++.+++++.+.+|+ ++..+.+++++++++++||
T Consensus 107 A~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~-~-~~~~Pi~~~i~~~~~~~~~----~~~~~~lll~~~~aa~igg 180 (449)
T 4f35_D 107 ADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTAT-A-AMMLPLVLGVLSKVDADKQ----RSTYVFVLLGVAYSASIGG 180 (449)
T ss_dssp HHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHH-H-HHHHHHHHHHSCSCCCSSC----CSSTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHH-H-HHhchHHHHHHHHHhhccc----hhHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999988764 4 6999999999999988775 4455678899999999999
Q ss_pred ccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHhhhcCCCCH
Q 008532 277 ALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVALLATPLILYKLYPPEVKDTPDAPAMAAKKLKQLGPVTR 356 (562)
Q Consensus 277 ~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 356 (562)
+.+++|+++|.+..+. .+++ |.||+..+.|++++.+++.+.+.++++|++.++..+ +.++..+.++
T Consensus 181 ~~t~ig~~~N~i~~~~-----~~~~--f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~ 246 (449)
T 4f35_D 181 IATLVGSPPNAIAAAE-----VGLS--FTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFE-------LDRAPVNWDK 246 (449)
T ss_dssp SSSSSSSHHHHHHHHH-----HTCC--HHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------CCCCC
T ss_pred hcccCcCCCccccccc-----cccc--HHHhhhhcCchHHHHHHHHHHHHHHHhcccccccch-------hhccchhhhH
Confidence 9999999999986542 2478 999999999999999999999999999987654322 2234456677
Q ss_pred HHHHHHHHHHHHHHHHHhcC-----CCC--CChHHHHHHHHHHHHHhCCcChHHHhhccCChhHHHHHHHHHHHHHHHHH
Q 008532 357 NEWIMVGTMLLAVSLWIFGD-----ALG--IPSVVAAMIGLSILLLLGVLDWDDCLSEKSAWDTLAWFAVLVGMAGQLTN 429 (562)
Q Consensus 357 ~e~~~l~i~~~~i~l~i~~~-----~~g--i~~~~vall~~~ll~~~gvl~~~~~~~~~i~w~~l~l~~~~~~l~~~l~~ 429 (562)
+|+.....+..++.+|++.. .++ .+.+.+++.++.++...|+++|||+. |++||+++++++|++++++++++
T Consensus 247 ~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~-~~i~W~~l~~~~g~~~l~~~l~~ 325 (449)
T 4f35_D 247 GKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQ-KTADWGVLLLFGGGLCLSNVLKQ 325 (449)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHH-HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhh-cccCchHHHHhhhHHHHhHHHHh
Confidence 88888888888888887543 233 33467778888888889999999985 58999999999999999999999
Q ss_pred hCHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Q 008532 430 LGIVTWMSDSVAKCLQSFSLSWPAAFGVLQASYFLIHYLFASQTGHVGALYSAFLAMHLAAGVPGVLAALALAYNTNLFG 509 (562)
Q Consensus 430 tGi~~~ia~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~f~S~~a~~~il~Pi~~~la~~~Gv~p~~~~l~l~~~~~~~~ 509 (562)
+|+.+|+++.+.+..++.+. . .....+......+++|.||++++.++.|++.+++++.|+||..+.++.+++++ ++
T Consensus 326 sG~~~~la~~l~~~~~~~~~--~-~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s-~~ 401 (449)
T 4f35_D 326 TGTSVFLANALSDMVSHMGI--F-VVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAAS-CA 401 (449)
T ss_dssp HTHHHHHHHHHHHHHHTTCS--H-HHHHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHH-CC
T ss_pred cCCHHHHHHHHhhhcccchH--H-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HH
Confidence 99999999999987776542 2 22222222223456799999999999999999999999999999999999887 78
Q ss_pred hhccccchhhHHhhcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008532 510 AITHYSSGQAAVYYGAGYIDLPDVFKMGFTMALVNAIIWGVTGTFWWK 557 (562)
Q Consensus 510 ~~tP~~s~~n~i~~~~g~i~~~d~~k~g~~~~li~~vi~~~v~~~~w~ 557 (562)
+++|+++++|++++|.|+++++|++|.|+++++++.++...+.+.|||
T Consensus 402 ~~~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 402 FMLPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp CSSSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999996
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.85 E-value=1.6e-21 Score=209.16 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=209.5
Q ss_pred CccCCCCCCCCCCCCCCccccccccccccCcCCCCCccccccccCCCCCCCCCCCCCCCcccchhHHHHHH---------
Q 008532 32 PISKSPPSIFPSHSRSFPTLRSRSLSLSRPHIIRPIHSSSQNDTASTVPPTNLPSPPPPRGAKLLPFVISI--------- 102 (562)
Q Consensus 32 p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~i~~--------- 102 (562)
||..++.+.++.+|+ ||.+.+++.....++.+.+.+.+++.+||..... +.+.++..|....
T Consensus 147 Pi~~~i~~~~~~~~~---~~~~~~lll~~~~aa~igg~~t~ig~~~N~i~~~------~~~~~f~~~~~~~~p~~li~l~ 217 (449)
T 4f35_D 147 PLVLGVLSKVDADKQ---RSTYVFVLLGVAYSASIGGIATLVGSPPNAIAAA------EVGLSFTDWMKFGLPTAMMMLP 217 (449)
T ss_dssp HHHHHHSCSCCCSSC---CSSTTTTHHHHHHHHHHHHSSSSSSSHHHHHHHH------HHTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccc---hhHHHHHHHHHHHHHhhhhhcccCcCCCcccccc------cccccHHHhhhhcCchHHHHHH
Confidence 777788888887775 3556677777777777888888999999987422 2455666665332
Q ss_pred HHHHHHHHhcCCCC------------CCCHHHHHHHHHHHHHHHHHhhcC----------CChHHHHHHHHHHHHHhcCC
Q 008532 103 SIGLILRFLVPKPV------------EVSPQAWQLLSIFLSTIAGLVLSP----------LPVGAWAFLGLTTSIVTRTL 160 (562)
Q Consensus 103 ~~~l~~~~~~p~p~------------~ls~~~~~~l~i~~~~i~lw~~~~----------~p~~~~all~~~ll~l~gv~ 160 (562)
...+.+|++++ |+ +.+.+++..+.++..++.+|.+.. .+...+++.+..++..+|.+
T Consensus 218 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l 296 (449)
T 4f35_D 218 MAIAILYFLLK-PTLNGMFELDRAPVNWDKGKVVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVV 296 (449)
T ss_dssp HHHHHHHTTC---------------CCCCCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhc-ccccccchhhccchhhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhcc
Confidence 22334445555 33 345667788888888888887532 12456788888888899999
Q ss_pred ChHHHHHhccchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHhhhcCCChhhhhhHhHHH
Q 008532 161 AFPTAFAAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGK-STLGLSYGLTFSEALIAPAMPSTTARAGGVFLP 239 (562)
Q Consensus 161 ~~~~~~~~~~~~~i~li~~~~~la~al~~tGl~~ria~~i~~~~g~-~~~~l~~~l~l~~~~ls~~~~s~~a~~~~i~~P 239 (562)
++||+.++.+|++++++.+++.++.+++|+|+.+++++.+.+..++ ++......+.....+++.+.+|++ ++ .++.|
T Consensus 297 ~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a-~~-~~l~P 374 (449)
T 4f35_D 297 HWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTA-SA-ALLIP 374 (449)
T ss_dssp CHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHH-HH-HHHHH
T ss_pred chhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHH-HH-HHHHH
Confidence 9999999999999999999999999999999999999999987655 555566666667777888887765 44 59999
Q ss_pred HHHHHHHHcCCCCCCCCcchhhhHHHHHhHHhhhhhcccccccchhHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHH
Q 008532 240 IIKSLSLSAGSKPGDSSSKKLGSYLIQSQFQSAGNSSALFLTAAAQNLLCLKLAEELGVIISSPWVSWFKAACVPALVAL 319 (562)
Q Consensus 240 i~~~i~~~~g~~p~~~~~~~~~~~l~l~~~~~~~~~g~~t~~g~~~n~i~~g~~~~~G~~i~~~~~~w~~~~~~~~li~~ 319 (562)
++.+++++.|.+| ..+++....+++. +.++|+|+++|.+++|. |+ ++ +.||+|.|+|.+++..
T Consensus 375 i~~~~a~~~g~~p---------~~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~----g~-~~--~~d~~k~G~~~~~~~~ 437 (449)
T 4f35_D 375 VFATVAEAFGMSP---------VLLSVLIAVAASC-AFMLPVATPPNAIVFAS----GH-IK--QSEMMRVGLYLNIACI 437 (449)
T ss_dssp HHHHHHHHTTCCS---------HHHHHHHHHHHHC-CCSSSSSSHHHHHHCSS----GG-GG--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH---------HHHHHHHHHHHHH-HhHhhhhhHHHHHHHhc----CC-CC--HHHHHHHHHHHHHHHH
Confidence 9999999999987 3456666666664 57899999999999874 54 78 9999999999999999
Q ss_pred HHHHHHHHHhcC
Q 008532 320 LATPLILYKLYP 331 (562)
Q Consensus 320 ~~~~~~~~~~~~ 331 (562)
++...+.+.|||
T Consensus 438 ~v~~~~~~~~Wk 449 (449)
T 4f35_D 438 GLLTAIAMLFWQ 449 (449)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 888888888886
No 3
>2bp3_S Platelet glycoprotein IB alpha chain; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens}
Probab=52.13 E-value=3.3 Score=23.83 Aligned_cols=12 Identities=67% Similarity=0.822 Sum_probs=9.3
Q ss_pred cccccccccccc
Q 008532 16 SLPTTRSALFHR 27 (562)
Q Consensus 16 ~~~~~~~~~~~~ 27 (562)
++|+|||.+|--
T Consensus 4 slptfrsslflw 15 (26)
T 2bp3_S 4 SLPTFRSSLFLW 15 (26)
T ss_pred cccchhheEEEE
Confidence 578899988853
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.32 E-value=5.1e+02 Score=18.19 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH--hcCCCCC
Q 008532 313 VPALVALLATPLILYK--LYPPEVK 335 (562)
Q Consensus 313 ~~~li~~~~~~~~~~~--~~~~~~~ 335 (562)
..+++.+.+..+.+|+ +||++.+
T Consensus 17 l~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCc
Confidence 3444444444444443 4555443
No 5
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=9.22 E-value=59 Score=18.64 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=11.3
Q ss_pred cCCCCCCCCCCCCCC
Q 008532 34 SKSPPSIFPSHSRSF 48 (562)
Q Consensus 34 ~~~~~~~~~s~~~~~ 48 (562)
||||.+.|+.+...+
T Consensus 5 MKSI~sFF~~k~k~~ 19 (23)
T 3p87_G 5 MKSIDTFFGVKNKKK 19 (26)
T ss_pred chhHHHHhccccccc
Confidence 688888888876444
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=8.53 E-value=1.2e+02 Score=30.11 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008532 304 WVSWFKAACVPALVALLATPLILYKLYPPE 333 (562)
Q Consensus 304 ~~~w~~~~~~~~li~~~~~~~~~~~~~~~~ 333 (562)
..+| .+|.+..+...++..+..+++||++
T Consensus 332 el~~-~~Gy~~~l~~m~~i~~~~~~~Fkrk 360 (363)
T 2iub_A 332 ELRW-KWGYPVVLAVMGVIAVIMVVYFKKK 360 (363)
T ss_dssp --------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred cccC-cHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344 5677666666666666677777754
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=6.58 E-value=1.7e+02 Score=28.66 Aligned_cols=22 Identities=5% Similarity=0.150 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 008532 311 ACVPALVALLATPLILYKLYPP 332 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~~~~~~~ 332 (562)
|++..+..+++..+..+++||+
T Consensus 314 gy~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 314 GFWLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444555554
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.71 E-value=7.9e+02 Score=17.18 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH--hcCCCC
Q 008532 313 VPALVALLATPLILYK--LYPPEV 334 (562)
Q Consensus 313 ~~~li~~~~~~~~~~~--~~~~~~ 334 (562)
..+++.+.+..+.+|+ +||++.
T Consensus 20 l~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 20 LGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHcCcccCCC
Confidence 3445544444444543 455443
No 9
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=5.42 E-value=1.7e+03 Score=20.89 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=58.1
Q ss_pred HHHHhcCCChHHHHHhccchHHHHHHHHHHHHHHHHHhCH--------HHHHHHHHHHHhCCChhhHHH-----HHHH-H
Q 008532 153 TSIVTRTLAFPTAFAAFTNEVIWLIVISFFFARGFVKTGL--------GDRIATYFVKWLGKSTLGLSY-----GLTF-S 218 (562)
Q Consensus 153 ll~l~gv~~~~~~~~~~~~~~i~li~~~~~la~al~~tGl--------~~ria~~i~~~~g~~~~~l~~-----~l~l-~ 218 (562)
...+-|..++.+.++.+....+-=++|.++++..+..+|. .+.+.+...++...++..... ..++ +
T Consensus 98 ~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVcl 177 (285)
T 3kcu_A 98 VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCL 177 (285)
T ss_dssp HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4456888999999998888888888999888887776654 233333333344444432222 1222 2
Q ss_pred HHHhhhcCCChhhhhhHhHHHHHHHHHHHcCCC
Q 008532 219 EALIAPAMPSTTARAGGVFLPIIKSLSLSAGSK 251 (562)
Q Consensus 219 ~~~ls~~~~s~~a~~~~i~~Pi~~~i~~~~g~~ 251 (562)
...+++-.-+..++..++..|+..=+ ..|++
T Consensus 178 aVw~~~~ak~~~gKi~~i~~pi~~Fv--~~GfE 208 (285)
T 3kcu_A 178 AVWMSYSGRSLMDKAFIMVLPVAMFV--ASGFE 208 (285)
T ss_dssp HHHHHTTCCSHHHHHHTTHHHHHHHH--HTTCC
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHH--HcCcc
Confidence 33344444555566555677777543 35654
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.16 E-value=7.7e+02 Score=16.44 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 008532 308 FKAACVPALVALLATPLILYKLYPPEVKDTPD 339 (562)
Q Consensus 308 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 339 (562)
...+.+-+++.+++..+..++++|++..+...
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Done!