Query 008532
Match_columns 562
No_of_seqs 313 out of 2233
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 05:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008532.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008532hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ae9a1 a.237.1.1 (A:1-76) The 10.8 41 0.003 23.5 1.1 16 20-35 61-76 (76)
2 d1pq1a_ f.1.4.1 (A:) Apoptosis 6.9 2.4E+02 0.018 23.2 4.9 41 402-444 128-174 (196)
3 d1lg7a_ d.213.1.1 (A:) VSV mat 5.6 77 0.0056 25.7 0.6 23 20-42 80-102 (170)
4 d1g5ma_ f.1.4.1 (A:) Bcl-2 {Hu 4.5 4E+02 0.029 21.0 4.6 21 402-422 92-115 (164)
5 d1zy3a1 f.1.4.1 (A:1-170) Apop 3.0 1E+03 0.075 18.3 6.4 42 402-445 83-130 (170)
6 d1rc2a_ f.19.1.1 (A:) Aquapori 2.7 6.5E+02 0.047 20.4 4.5 36 132-172 48-88 (231)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 2.4 4.2E+02 0.031 15.2 1.7 17 209-225 19-35 (37)
8 d2iuba2 f.17.3.1 (A:286-349) M 2.2 5.7E+02 0.042 16.2 2.7 7 326-332 56-62 (64)
9 d2h8aa1 f.56.1.1 (A:9-147) Mic 2.1 4.7E+02 0.034 19.7 2.4 15 410-424 119-133 (139)
10 d2axti1 f.23.37.1 (I:1-35) Pho 2.1 3.8E+02 0.027 15.3 1.2 10 42-51 25-34 (35)
No 1
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=10.76 E-value=41 Score=23.48 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.3
Q ss_pred ccccccccCCCCCccC
Q 008532 20 TRSALFHRFPYKPISK 35 (562)
Q Consensus 20 ~~~~~~~~~~~~p~~~ 35 (562)
.+|.+|+|+||.|=+|
T Consensus 61 ~~s~~~~rlpyepk~k 76 (76)
T d2ae9a1 61 LASVNLSRLPYEPKLK 76 (76)
T ss_dssp HHHTTCSSSCCCCSCC
T ss_pred HHHhhcccCCCCcccC
Confidence 5688999999999654
No 2
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.95 E-value=2.4e+02 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=21.3
Q ss_pred HHHhhccCChhH---HHHHHHHHHHHHHHHHh---CHHHHHHHHHHHhh
Q 008532 402 DDCLSEKSAWDT---LAWFAVLVGMAGQLTNL---GIVTWMSDSVAKCL 444 (562)
Q Consensus 402 ~~~~~~~i~w~~---l~l~~~~~~l~~~l~~t---Gi~~~ia~~l~~~~ 444 (562)
+++++++++|+= ++.|++.++. -..+. ...+.+++++...+
T Consensus 128 ~elF~dginWGRIVal~~F~~~la~--~~~~~~~~~~v~~I~~~~~~fl 174 (196)
T d1pq1a_ 128 NELFRDGVNWGRIVAFFSFGGALCV--ESVDKEMQVLVSRIASWMATYL 174 (196)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHHH--HHHHTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHH
Confidence 567777888873 3444444332 22222 35555555555443
No 3
>d1lg7a_ d.213.1.1 (A:) VSV matrix protein {Vesicular stomatitis virus, VSV [TaxId: 11276]}
Probab=5.57 E-value=77 Score=25.65 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred ccccccccCCCCCccCCCCCCCC
Q 008532 20 TRSALFHRFPYKPISKSPPSIFP 42 (562)
Q Consensus 20 ~~~~~~~~~~~~p~~~~~~~~~~ 42 (562)
-|+-.+||+.+-|=|.+.|+-|-
T Consensus 80 Gr~~vpHrlG~~Ppm~~vpEtFr 102 (170)
T d1lg7a_ 80 GRAYLPHRMGKTPPMLNVPEHFR 102 (170)
T ss_dssp EEEEEEECSCCCCCCCSCCEEEE
T ss_pred ceEEeecccCCCCcccccchhcc
Confidence 58889999999999999999884
No 4
>d1g5ma_ f.1.4.1 (A:) Bcl-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.50 E-value=4e+02 Score=21.00 Aligned_cols=21 Identities=10% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHhhccCChh---HHHHHHHHHH
Q 008532 402 DDCLSEKSAWD---TLAWFAVLVG 422 (562)
Q Consensus 402 ~~~~~~~i~w~---~l~l~~~~~~ 422 (562)
+++++++++|+ .++.|++.++
T Consensus 92 ~elF~dginWGRIVal~~F~~~la 115 (164)
T d1g5ma_ 92 EELFRDGVNWGRIVAFFEFGGVMC 115 (164)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Confidence 56667778887 3344444443
No 5
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.95 E-value=1e+03 Score=18.33 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=21.6
Q ss_pred HHHhhccCChhH---HHHHHHHHHHHHHHHHhC---HHHHHHHHHHHhhc
Q 008532 402 DDCLSEKSAWDT---LAWFAVLVGMAGQLTNLG---IVTWMSDSVAKCLQ 445 (562)
Q Consensus 402 ~~~~~~~i~w~~---l~l~~~~~~l~~~l~~tG---i~~~ia~~l~~~~~ 445 (562)
+++++++++|+= ++.|+|.++ .-+.+.| ..+.+++++...+.
T Consensus 83 ~elF~dginWGRIVal~~F~g~la--~~~~~~~~~~~v~~i~~~~~~fl~ 130 (170)
T d1zy3a1 83 DELFQGGPNWGRLVAFFVFGAALC--AESVNKEMEVLVGQVQEWMVAYLE 130 (170)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH--HHHHHcCCchHHHHHHHHHHHHHH
Confidence 566677788873 344444433 2233333 44555555555443
No 6
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=2.66 E-value=6.5e+02 Score=20.40 Aligned_cols=36 Identities=0% Similarity=-0.106 Sum_probs=20.3
Q ss_pred HHHHHhhcC-----CChHHHHHHHHHHHHHhcCCChHHHHHhccch
Q 008532 132 TIAGLVLSP-----LPVGAWAFLGLTTSIVTRTLAFPTAFAAFTNE 172 (562)
Q Consensus 132 ~i~lw~~~~-----~p~~~~all~~~ll~l~gv~~~~~~~~~~~~~ 172 (562)
++..+++.+ +|+.++- .+.+.|..+++++.-.+...
T Consensus 48 ~~~i~~~g~iSGaH~NPAVTl-----a~~~~g~~~~~~~~~Yi~aQ 88 (231)
T d1rc2a_ 48 LTMAFAVGHISGGHFNPAVTI-----GLWAGGRFPAKEVVGYVIAQ 88 (231)
T ss_dssp HHHHHHHTTTTCCCCSHHHHH-----HHHHTTCSCTTTHHHHHHHH
T ss_pred HHHHHHHhcccCccCCCchhH-----HHHhcCCCcHHHHHHHHHHH
Confidence 334455554 5664432 23457888988876654444
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.36 E-value=4.2e+02 Score=15.21 Aligned_cols=17 Identities=24% Similarity=0.139 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHhhhc
Q 008532 209 LGLSYGLTFSEALIAPA 225 (562)
Q Consensus 209 ~~l~~~l~l~~~~ls~~ 225 (562)
+++++.+.+...+.++|
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444444
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.19 E-value=5.7e+02 Score=16.22 Aligned_cols=7 Identities=0% Similarity=0.187 Sum_probs=3.1
Q ss_pred HHHhcCC
Q 008532 326 LYKLYPP 332 (562)
Q Consensus 326 ~~~~~~~ 332 (562)
.+.++|+
T Consensus 56 ~~~~f~r 62 (64)
T d2iuba2 56 MVVYFKK 62 (64)
T ss_dssp HHTTTTS
T ss_pred HHHHHhc
Confidence 3444444
No 9
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.08 E-value=4.7e+02 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHHHH
Q 008532 410 AWDTLAWFAVLVGMA 424 (562)
Q Consensus 410 ~w~~l~l~~~~~~l~ 424 (562)
+|..+++..|..+..
T Consensus 119 p~R~~~~~~g~~~~~ 133 (139)
T d2h8aa1 119 PNRGLAFFVGYGVTL 133 (139)
T ss_dssp HHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 466777777665443
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.06 E-value=3.8e+02 Score=15.33 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=5.4
Q ss_pred CCCCCCCccc
Q 008532 42 PSHSRSFPTL 51 (562)
Q Consensus 42 ~s~~~~~~~~ 51 (562)
.+||..+|+|
T Consensus 25 SnDP~RnP~r 34 (35)
T d2axti1 25 SGDPARNPKR 34 (35)
T ss_dssp TTCTTCSSCC
T ss_pred cCCCCCCCCC
Confidence 4666555543
Done!