Query 008533
Match_columns 562
No_of_seqs 211 out of 1800
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 13:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2023 Nuclear transport rece 100.0 2.1E-79 4.5E-84 578.8 36.6 547 4-561 2-558 (885)
2 KOG2171 Karyopherin (importin) 100.0 1E-59 2.2E-64 475.5 48.8 498 14-560 3-514 (1075)
3 KOG1241 Karyopherin (importin) 100.0 5.6E-52 1.2E-56 399.5 39.5 484 16-554 2-535 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 1.9E-41 4.1E-46 316.5 40.4 476 24-554 14-534 (858)
5 KOG1991 Nuclear transport rece 100.0 3E-39 6.5E-44 321.2 43.9 498 14-543 3-570 (1010)
6 KOG1992 Nuclear export recepto 100.0 4.9E-34 1.1E-38 278.0 38.0 499 13-546 3-578 (960)
7 COG5656 SXM1 Importin, protein 100.0 1.8E-28 3.9E-33 236.6 38.9 494 15-541 3-563 (970)
8 KOG2171 Karyopherin (importin) 100.0 1.8E-27 3.9E-32 242.4 41.8 471 13-559 37-559 (1075)
9 KOG2274 Predicted importin 9 [ 100.0 3.1E-27 6.8E-32 233.1 40.6 494 14-552 3-562 (1005)
10 KOG1993 Nuclear transport rece 100.0 6.4E-25 1.4E-29 213.8 34.9 512 17-562 2-613 (978)
11 KOG2023 Nuclear transport rece 99.9 8.8E-24 1.9E-28 202.1 33.9 457 26-559 59-600 (885)
12 KOG2021 Nuclear mRNA export fa 99.9 8.3E-21 1.8E-25 184.2 41.7 495 15-549 3-617 (980)
13 KOG1824 TATA-binding protein-i 99.9 2E-21 4.3E-26 192.8 35.7 473 62-559 16-608 (1233)
14 KOG1241 Karyopherin (importin) 99.9 4E-20 8.7E-25 180.2 38.8 488 22-560 224-778 (859)
15 COG5657 CSE1 CAS/CSE protein i 99.9 3.7E-19 8E-24 177.2 39.4 500 18-551 7-611 (947)
16 KOG1824 TATA-binding protein-i 99.9 1.4E-17 3E-22 165.9 42.9 450 26-532 58-623 (1233)
17 COG5101 CRM1 Importin beta-rel 99.8 1.4E-17 3E-22 159.1 34.7 504 14-554 13-653 (1053)
18 KOG2081 Nuclear transport regu 99.8 2E-16 4.3E-21 150.7 38.5 466 34-558 2-545 (559)
19 KOG0213 Splicing factor 3b, su 99.8 5.2E-16 1.1E-20 151.0 41.4 511 8-553 356-916 (1172)
20 KOG2022 Nuclear transport rece 99.8 2.6E-15 5.7E-20 149.4 43.4 501 11-555 3-625 (982)
21 COG5215 KAP95 Karyopherin (imp 99.8 4.2E-15 9.1E-20 140.9 41.1 490 22-560 228-776 (858)
22 PF08506 Cse1: Cse1; InterPro 99.8 1.9E-17 4.1E-22 158.1 21.4 276 197-503 57-370 (370)
23 KOG1242 Protein containing ada 99.7 4.1E-14 9E-19 137.1 36.5 411 12-508 51-483 (569)
24 KOG0212 Uncharacterized conser 99.7 5.8E-14 1.2E-18 133.2 36.1 409 32-508 16-444 (675)
25 KOG0213 Splicing factor 3b, su 99.7 4.3E-13 9.4E-18 131.0 39.3 411 15-510 636-1067(1172)
26 KOG0166 Karyopherin (importin) 99.7 5.4E-15 1.2E-19 142.4 25.7 359 97-555 70-442 (514)
27 PF01602 Adaptin_N: Adaptin N 99.7 5.6E-13 1.2E-17 138.5 43.0 436 19-547 46-522 (526)
28 KOG1242 Protein containing ada 99.7 1.9E-13 4.1E-18 132.6 34.7 384 54-511 61-447 (569)
29 PTZ00429 beta-adaptin; Provisi 99.7 2.8E-12 6.2E-17 132.8 44.0 423 23-520 76-519 (746)
30 KOG0212 Uncharacterized conser 99.7 1.2E-13 2.6E-18 131.2 30.7 394 97-552 4-409 (675)
31 COG5181 HSH155 U2 snRNP splice 99.7 1.4E-12 3E-17 125.1 33.5 516 16-559 169-804 (975)
32 PF01602 Adaptin_N: Adaptin N 99.6 7.5E-13 1.6E-17 137.6 34.7 475 13-553 5-487 (526)
33 PLN03200 cellulose synthase-in 99.6 4.6E-12 9.9E-17 141.2 38.2 483 26-552 200-767 (2102)
34 PLN03200 cellulose synthase-in 99.6 8.2E-12 1.8E-16 139.2 37.1 426 48-549 404-860 (2102)
35 PTZ00429 beta-adaptin; Provisi 99.6 3.3E-10 7.1E-15 117.7 46.0 464 15-553 35-511 (746)
36 KOG0166 Karyopherin (importin) 99.6 2.8E-12 6E-17 123.9 28.4 388 62-508 77-486 (514)
37 KOG0915 Uncharacterized conser 99.6 1.8E-12 3.9E-17 136.3 27.6 386 105-532 969-1368(1702)
38 COG5181 HSH155 U2 snRNP splice 99.6 2.4E-12 5.3E-17 123.5 25.9 345 93-510 521-872 (975)
39 KOG0915 Uncharacterized conser 99.5 3.1E-11 6.7E-16 127.3 33.9 432 62-555 829-1312(1702)
40 PF10508 Proteasom_PSMB: Prote 99.5 8.5E-11 1.8E-15 119.0 32.4 396 98-548 43-461 (503)
41 PRK13800 putative oxidoreducta 99.5 1.2E-11 2.6E-16 134.4 27.2 273 96-505 624-896 (897)
42 KOG0211 Protein phosphatase 2A 99.5 1.2E-10 2.6E-15 119.5 32.0 422 13-509 234-665 (759)
43 PRK13800 putative oxidoreducta 99.5 1.5E-11 3.2E-16 133.7 26.5 274 133-546 623-896 (897)
44 PRK09687 putative lyase; Provi 99.5 1.6E-11 3.4E-16 113.8 22.5 253 181-545 24-278 (280)
45 KOG0211 Protein phosphatase 2A 99.5 2.3E-10 5E-15 117.5 32.7 472 32-549 175-664 (759)
46 PRK09687 putative lyase; Provi 99.4 8.5E-11 1.8E-15 109.0 23.4 253 133-505 25-279 (280)
47 COG5064 SRP1 Karyopherin (impo 99.4 4.6E-12 1E-16 113.2 13.8 353 133-549 73-443 (526)
48 KOG1991 Nuclear transport rece 99.4 2.8E-08 6E-13 101.7 41.3 410 63-531 316-780 (1010)
49 KOG1060 Vesicle coat complex A 99.4 9.8E-09 2.1E-13 102.1 35.1 409 21-536 77-520 (968)
50 KOG2020 Nuclear transport rece 99.3 2.6E-08 5.7E-13 105.6 37.4 150 11-164 6-166 (1041)
51 COG5064 SRP1 Karyopherin (impo 99.3 7.2E-10 1.6E-14 99.4 19.7 351 62-510 82-445 (526)
52 PF12755 Vac14_Fab1_bd: Vacuol 99.3 1.1E-10 2.4E-15 88.2 11.5 95 408-508 2-96 (97)
53 KOG1059 Vesicle coat complex A 99.3 1.1E-07 2.4E-12 93.9 34.9 190 86-292 137-366 (877)
54 KOG1062 Vesicle coat complex A 99.2 6.4E-07 1.4E-11 89.9 37.3 195 86-292 135-380 (866)
55 KOG1240 Protein kinase contain 99.2 7.4E-09 1.6E-13 107.4 23.5 295 132-510 423-727 (1431)
56 KOG1061 Vesicle coat complex A 99.2 1.1E-07 2.5E-12 95.1 30.5 423 16-508 50-489 (734)
57 PF10508 Proteasom_PSMB: Prote 99.1 3.5E-07 7.6E-12 92.9 33.9 370 26-463 49-463 (503)
58 KOG1943 Beta-tubulin folding c 99.1 4.1E-07 8.8E-12 94.2 32.3 346 89-510 337-707 (1133)
59 PF03810 IBN_N: Importin-beta 99.1 6.2E-10 1.3E-14 82.0 8.7 67 36-103 1-76 (77)
60 KOG1062 Vesicle coat complex A 99.1 3.7E-07 8E-12 91.6 29.2 305 133-523 109-429 (866)
61 KOG1248 Uncharacterized conser 99.0 3.1E-06 6.6E-11 88.9 35.5 389 52-535 518-926 (1176)
62 KOG1248 Uncharacterized conser 99.0 2.1E-05 4.7E-10 82.8 41.6 373 128-560 515-909 (1176)
63 KOG1060 Vesicle coat complex A 99.0 8.1E-06 1.8E-10 81.9 35.8 416 6-531 29-477 (968)
64 KOG1943 Beta-tubulin folding c 99.0 1.3E-05 2.8E-10 83.5 37.2 435 56-552 346-840 (1133)
65 KOG1992 Nuclear export recepto 99.0 3.2E-05 7E-10 78.2 38.7 337 169-553 223-627 (960)
66 PF12348 CLASP_N: CLASP N term 98.9 5E-08 1.1E-12 89.1 17.1 181 363-556 19-213 (228)
67 KOG1059 Vesicle coat complex A 98.9 5.6E-06 1.2E-10 82.2 30.9 255 177-510 141-403 (877)
68 PF12348 CLASP_N: CLASP N term 98.9 5.5E-08 1.2E-12 88.8 16.2 183 231-466 17-210 (228)
69 KOG1020 Sister chromatid cohes 98.9 5.8E-05 1.3E-09 81.4 37.5 140 96-249 819-959 (1692)
70 COG5240 SEC21 Vesicle coat com 98.8 2E-05 4.3E-10 76.5 30.5 285 179-507 263-554 (898)
71 PF12755 Vac14_Fab1_bd: Vacuol 98.8 6E-08 1.3E-12 73.4 9.9 91 449-545 2-92 (97)
72 PF12460 MMS19_C: RNAPII trans 98.8 3.2E-05 7E-10 77.1 32.4 368 97-528 3-414 (415)
73 COG5240 SEC21 Vesicle coat com 98.8 6.7E-06 1.5E-10 79.6 25.1 168 69-255 241-409 (898)
74 PF13513 HEAT_EZ: HEAT-like re 98.7 1.9E-08 4E-13 68.3 5.4 55 406-460 1-55 (55)
75 KOG4224 Armadillo repeat prote 98.7 3.2E-06 6.9E-11 77.2 19.9 397 48-510 85-495 (550)
76 cd00020 ARM Armadillo/beta-cat 98.7 1.4E-07 2.9E-12 76.6 9.5 111 389-507 7-119 (120)
77 KOG4224 Armadillo repeat prote 98.7 4.5E-07 9.7E-12 82.6 13.4 330 111-507 65-404 (550)
78 KOG1077 Vesicle coat complex A 98.7 0.00014 3.1E-09 72.4 30.7 408 12-525 11-450 (938)
79 PF08389 Xpo1: Exportin 1-like 98.6 1.1E-07 2.4E-12 80.4 6.8 135 107-245 2-148 (148)
80 KOG2259 Uncharacterized conser 98.6 0.0002 4.2E-09 71.0 29.2 117 131-260 198-320 (823)
81 KOG1240 Protein kinase contain 98.6 8E-06 1.7E-10 85.7 20.8 288 107-466 437-729 (1431)
82 KOG4535 HEAT and armadillo rep 98.5 8.2E-05 1.8E-09 70.8 24.2 391 104-552 7-516 (728)
83 PF12460 MMS19_C: RNAPII trans 98.5 2.5E-05 5.4E-10 77.8 22.3 214 50-270 191-414 (415)
84 COG5096 Vesicle coat complex, 98.5 0.0026 5.6E-08 66.0 39.2 139 53-209 57-195 (757)
85 PF13513 HEAT_EZ: HEAT-like re 98.5 2.7E-07 5.9E-12 62.5 5.0 55 447-506 1-55 (55)
86 KOG1020 Sister chromatid cohes 98.5 0.0013 2.7E-08 71.6 34.0 163 110-288 794-957 (1692)
87 KOG1061 Vesicle coat complex A 98.4 0.00036 7.7E-09 70.8 26.9 460 17-549 15-486 (734)
88 KOG1078 Vesicle coat complex C 98.4 0.0038 8.2E-08 63.6 33.4 259 179-509 244-533 (865)
89 PF05004 IFRD: Interferon-rela 98.3 0.00048 1.1E-08 65.1 25.2 211 271-532 52-285 (309)
90 PF05804 KAP: Kinesin-associat 98.3 0.0057 1.2E-07 63.9 34.7 368 105-549 262-649 (708)
91 KOG2259 Uncharacterized conser 98.3 0.00048 1E-08 68.4 24.8 226 220-510 197-441 (823)
92 PF12717 Cnd1: non-SMC mitotic 98.3 0.00012 2.7E-09 63.4 18.1 133 106-250 1-139 (178)
93 KOG2956 CLIP-associating prote 98.3 0.00014 3.1E-09 69.2 19.3 190 236-483 302-494 (516)
94 PF12717 Cnd1: non-SMC mitotic 98.3 4.3E-05 9.4E-10 66.3 14.9 133 144-291 1-139 (178)
95 cd00020 ARM Armadillo/beta-cat 98.3 2.7E-06 5.9E-11 68.8 7.0 110 434-548 8-119 (120)
96 PF13646 HEAT_2: HEAT repeats; 98.2 1.4E-05 2.9E-10 60.5 10.3 86 391-504 1-88 (88)
97 KOG2274 Predicted importin 9 [ 98.2 0.0016 3.5E-08 67.1 26.4 275 179-507 489-779 (1005)
98 KOG4413 26S proteasome regulat 98.2 0.00044 9.5E-09 62.8 19.2 179 113-295 63-247 (524)
99 KOG1410 Nuclear transport rece 98.2 0.0013 2.8E-08 65.5 23.7 252 13-268 3-307 (1082)
100 KOG1993 Nuclear transport rece 98.1 0.014 3E-07 59.8 31.5 255 32-292 413-689 (978)
101 KOG4535 HEAT and armadillo rep 98.1 0.0024 5.1E-08 61.2 24.3 443 62-549 7-559 (728)
102 KOG1077 Vesicle coat complex A 98.1 0.013 2.8E-07 59.0 35.9 272 91-431 144-443 (938)
103 PF13646 HEAT_2: HEAT repeats; 98.1 2E-05 4.3E-10 59.6 8.5 86 435-545 1-88 (88)
104 PF03378 CAS_CSE1: CAS/CSE pro 98.0 0.0049 1.1E-07 61.2 25.1 305 176-533 22-352 (435)
105 PF14500 MMS19_N: Dos2-interac 98.0 0.0033 7.2E-08 57.8 22.2 250 135-441 3-258 (262)
106 KOG1820 Microtubule-associated 98.0 0.00028 6E-09 74.2 17.0 185 362-560 264-454 (815)
107 KOG1078 Vesicle coat complex C 98.0 0.007 1.5E-07 61.7 25.8 87 368-461 444-531 (865)
108 KOG2956 CLIP-associating prote 98.0 0.0011 2.3E-08 63.4 19.1 211 81-307 275-492 (516)
109 PF05918 API5: Apoptosis inhib 98.0 0.023 4.9E-07 57.4 29.3 141 53-212 25-165 (556)
110 TIGR02270 conserved hypothetic 98.0 0.0022 4.8E-08 63.0 22.0 242 130-507 53-295 (410)
111 KOG2022 Nuclear transport rece 98.0 0.033 7.2E-07 57.8 37.8 189 109-313 440-640 (982)
112 PF08506 Cse1: Cse1; InterPro 98.0 0.0055 1.2E-07 59.4 24.0 215 195-457 111-370 (370)
113 KOG1820 Microtubule-associated 98.0 0.00084 1.8E-08 70.7 19.6 185 228-466 260-447 (815)
114 KOG1058 Vesicle coat complex C 97.9 0.032 7E-07 56.8 32.2 313 88-465 129-466 (948)
115 COG5656 SXM1 Importin, protein 97.9 0.033 7.2E-07 56.7 33.5 388 81-560 334-768 (970)
116 PF05804 KAP: Kinesin-associat 97.9 0.0046 9.9E-08 64.6 24.1 298 131-510 331-651 (708)
117 KOG4653 Uncharacterized conser 97.9 0.0032 6.9E-08 64.8 22.1 182 367-558 784-973 (982)
118 KOG2032 Uncharacterized conser 97.9 0.00058 1.3E-08 65.6 15.1 157 393-554 218-376 (533)
119 KOG2032 Uncharacterized conser 97.8 0.034 7.3E-07 54.0 28.2 266 218-549 255-531 (533)
120 PF04826 Arm_2: Armadillo-like 97.8 0.003 6.5E-08 57.7 18.9 185 47-250 11-205 (254)
121 KOG4653 Uncharacterized conser 97.8 0.0043 9.2E-08 63.9 20.6 223 53-288 729-961 (982)
122 KOG1525 Sister chromatid cohes 97.8 0.051 1.1E-06 60.3 30.2 152 367-532 275-436 (1266)
123 PF05918 API5: Apoptosis inhib 97.8 0.02 4.4E-07 57.7 24.9 168 105-289 34-205 (556)
124 COG5096 Vesicle coat complex, 97.8 0.076 1.6E-06 55.5 35.7 136 17-161 57-196 (757)
125 KOG1293 Proteins containing ar 97.7 0.068 1.5E-06 53.8 28.7 131 406-541 391-525 (678)
126 PF05004 IFRD: Interferon-rela 97.7 0.029 6.4E-07 53.2 24.1 193 229-465 51-260 (309)
127 KOG2062 26S proteasome regulat 97.7 0.044 9.4E-07 55.8 24.9 85 366-456 604-690 (929)
128 PF08167 RIX1: rRNA processing 97.7 0.0021 4.6E-08 54.7 14.2 139 386-529 22-164 (165)
129 KOG0168 Putative ubiquitin fus 97.7 0.1 2.2E-06 54.1 28.3 187 97-292 171-365 (1051)
130 KOG1525 Sister chromatid cohes 97.7 0.17 3.7E-06 56.4 34.2 332 62-463 61-406 (1266)
131 PF02985 HEAT: HEAT repeat; I 97.6 6.1E-05 1.3E-09 43.6 3.2 30 434-463 1-30 (31)
132 KOG4524 Uncharacterized conser 97.6 0.022 4.7E-07 59.8 23.3 99 386-491 800-901 (1014)
133 COG1413 FOG: HEAT repeat [Ener 97.6 0.028 6.1E-07 54.7 23.7 226 180-504 43-269 (335)
134 COG1413 FOG: HEAT repeat [Ener 97.6 0.062 1.3E-06 52.3 26.1 187 48-291 43-242 (335)
135 KOG2933 Uncharacterized conser 97.6 0.0008 1.7E-08 60.9 11.5 131 391-535 90-220 (334)
136 KOG1967 DNA repair/transcripti 97.6 0.0011 2.3E-08 68.6 13.4 149 130-285 866-1018(1030)
137 KOG1967 DNA repair/transcripti 97.6 0.00096 2.1E-08 68.9 13.0 151 386-544 864-1019(1030)
138 KOG1058 Vesicle coat complex C 97.6 0.11 2.4E-06 53.1 36.0 405 13-531 21-444 (948)
139 TIGR02270 conserved hypothetic 97.6 0.041 8.8E-07 54.2 23.4 153 47-248 53-205 (410)
140 KOG1293 Proteins containing ar 97.6 0.11 2.5E-06 52.3 26.9 137 367-510 393-535 (678)
141 PF04826 Arm_2: Armadillo-like 97.6 0.013 2.8E-07 53.5 18.7 211 11-241 11-253 (254)
142 PF13001 Ecm29: Proteasome sta 97.5 0.14 3E-06 52.5 28.5 82 17-104 25-113 (501)
143 KOG2933 Uncharacterized conser 97.5 0.003 6.4E-08 57.3 13.4 134 364-511 101-237 (334)
144 KOG0414 Chromosome condensatio 97.5 0.21 4.5E-06 54.0 37.1 124 372-508 898-1027(1251)
145 PF08167 RIX1: rRNA processing 97.5 0.0031 6.8E-08 53.7 13.0 126 428-560 20-153 (165)
146 PLN03076 ARF guanine nucleotid 97.5 0.096 2.1E-06 60.7 28.1 344 128-530 1134-1512(1780)
147 PF13251 DUF4042: Domain of un 97.5 0.0012 2.6E-08 56.4 9.9 146 407-552 1-177 (182)
148 PF10274 ParcG: Parkin co-regu 97.5 0.0022 4.8E-08 54.3 11.3 123 431-557 36-172 (183)
149 KOG1517 Guanine nucleotide bin 97.4 0.014 3E-07 61.5 18.8 101 406-510 571-673 (1387)
150 PLN03076 ARF guanine nucleotid 97.4 0.17 3.6E-06 58.9 29.0 193 62-258 1148-1384(1780)
151 PF02985 HEAT: HEAT repeat; I 97.4 0.00038 8.2E-09 40.3 4.4 31 480-510 1-31 (31)
152 PF03378 CAS_CSE1: CAS/CSE pro 97.4 0.019 4.2E-07 57.0 18.7 219 91-317 24-254 (435)
153 PF11865 DUF3385: Domain of un 97.3 0.0056 1.2E-07 51.7 12.3 147 386-551 7-159 (160)
154 PF13251 DUF4042: Domain of un 97.3 0.0049 1.1E-07 52.7 11.4 146 108-253 1-177 (182)
155 KOG4500 Rho/Rac GTPase guanine 97.3 0.19 4.2E-06 48.1 23.9 112 388-508 314-431 (604)
156 KOG0414 Chromosome condensatio 97.2 0.0052 1.1E-07 65.5 13.0 161 112-292 896-1065(1251)
157 COG5098 Chromosome condensatio 97.2 0.33 7.1E-06 49.5 25.8 128 371-508 282-415 (1128)
158 KOG4413 26S proteasome regulat 97.2 0.18 4E-06 46.3 26.5 258 144-464 53-335 (524)
159 PF12719 Cnd3: Nuclear condens 97.1 0.11 2.4E-06 49.4 20.3 117 93-210 27-144 (298)
160 PF01603 B56: Protein phosphat 97.1 0.17 3.7E-06 50.2 21.7 236 16-260 134-380 (409)
161 PF12719 Cnd3: Nuclear condens 97.1 0.059 1.3E-06 51.2 17.9 153 128-292 23-186 (298)
162 KOG0392 SNF2 family DNA-depend 97.0 0.014 3.1E-07 62.7 14.0 177 368-554 750-930 (1549)
163 KOG2062 26S proteasome regulat 97.0 0.028 6.1E-07 57.1 15.3 151 62-237 530-681 (929)
164 PF08569 Mo25: Mo25-like; Int 97.0 0.35 7.5E-06 46.3 23.7 186 97-294 80-286 (335)
165 cd00256 VATPase_H VATPase_H, r 97.0 0.41 9E-06 47.2 27.7 193 47-251 52-259 (429)
166 KOG0413 Uncharacterized conser 97.0 0.71 1.5E-05 49.0 25.6 91 406-509 945-1036(1529)
167 PF10274 ParcG: Parkin co-regu 96.9 0.0025 5.4E-08 54.0 6.5 84 477-561 36-123 (183)
168 KOG0168 Putative ubiquitin fus 96.9 0.076 1.6E-06 55.0 17.7 246 234-532 181-438 (1051)
169 KOG2025 Chromosome condensatio 96.8 0.23 4.9E-06 50.7 19.9 183 88-289 80-292 (892)
170 KOG0392 SNF2 family DNA-depend 96.8 0.11 2.3E-06 56.4 18.2 143 61-211 87-239 (1549)
171 PF14500 MMS19_N: Dos2-interac 96.8 0.43 9.2E-06 44.1 22.2 237 228-527 6-257 (262)
172 KOG2025 Chromosome condensatio 96.8 0.28 6.1E-06 50.1 20.0 141 14-156 39-189 (892)
173 KOG2160 Armadillo/beta-catenin 96.7 0.031 6.8E-07 52.2 12.5 142 406-552 97-243 (342)
174 cd00256 VATPase_H VATPase_H, r 96.7 0.77 1.7E-05 45.3 27.4 69 433-507 353-424 (429)
175 KOG1949 Uncharacterized conser 96.6 0.14 3E-06 52.0 16.6 199 81-291 113-331 (1005)
176 PF04118 Dopey_N: Dopey, N-ter 96.6 0.15 3.3E-06 47.9 16.1 142 134-289 57-199 (307)
177 PF04510 DUF577: Family of unk 96.5 0.13 2.7E-06 42.9 13.4 147 93-251 3-165 (174)
178 KOG1949 Uncharacterized conser 96.5 0.75 1.6E-05 47.1 20.6 110 388-507 219-330 (1005)
179 PF11864 DUF3384: Domain of un 96.4 1.3 2.8E-05 45.1 27.8 291 108-461 5-329 (464)
180 PF08064 UME: UME (NUC010) dom 96.4 0.059 1.3E-06 42.0 10.5 96 216-314 6-105 (107)
181 KOG1243 Protein kinase [Genera 96.4 0.11 2.3E-06 53.1 14.6 189 221-466 330-519 (690)
182 COG5116 RPN2 26S proteasome re 96.4 0.053 1.2E-06 53.5 12.0 122 406-546 566-688 (926)
183 KOG0946 ER-Golgi vesicle-tethe 96.4 0.66 1.4E-05 48.1 19.9 114 389-509 122-242 (970)
184 KOG1243 Protein kinase [Genera 96.4 0.091 2E-06 53.6 13.9 190 259-510 327-517 (690)
185 KOG2549 Transcription initiati 96.3 0.51 1.1E-05 46.9 18.2 176 220-443 206-393 (576)
186 PF10363 DUF2435: Protein of u 96.3 0.092 2E-06 39.4 10.4 73 434-512 4-76 (92)
187 PF10521 DUF2454: Protein of u 96.3 0.1 2.2E-06 49.0 13.3 145 126-275 114-278 (282)
188 KOG1822 Uncharacterized conser 96.3 3.2 6.9E-05 47.8 36.0 234 13-252 874-1129(2067)
189 KOG1517 Guanine nucleotide bin 96.2 0.37 8E-06 51.5 17.7 195 46-254 470-675 (1387)
190 PF08767 CRM1_C: CRM1 C termin 96.2 0.38 8.2E-06 46.0 16.9 183 366-552 42-247 (319)
191 KOG2021 Nuclear mRNA export fa 96.2 2 4.3E-05 44.6 43.3 303 180-530 335-748 (980)
192 COG5218 YCG1 Chromosome conden 96.1 1.8 3.9E-05 43.5 30.0 56 17-75 134-194 (885)
193 PF01347 Vitellogenin_N: Lipop 96.1 1.2 2.7E-05 47.4 22.0 111 388-532 489-604 (618)
194 PF08064 UME: UME (NUC010) dom 96.1 0.11 2.3E-06 40.5 10.3 96 427-529 5-105 (107)
195 PF08623 TIP120: TATA-binding 96.0 0.041 8.9E-07 46.3 8.1 118 427-552 3-150 (169)
196 PF11865 DUF3385: Domain of un 96.0 0.07 1.5E-06 45.1 9.7 148 127-290 6-156 (160)
197 smart00802 UME Domain in UVSB 95.9 0.14 3E-06 39.6 9.9 96 215-313 5-104 (107)
198 COG5218 YCG1 Chromosome conden 95.9 0.41 9E-06 47.8 15.2 140 106-252 24-163 (885)
199 KOG1851 Uncharacterized conser 95.8 4.4 9.5E-05 45.9 32.6 174 370-554 1506-1683(1710)
200 smart00802 UME Domain in UVSB 95.8 0.18 3.9E-06 39.0 10.3 96 426-528 4-104 (107)
201 KOG2160 Armadillo/beta-catenin 95.8 0.72 1.6E-05 43.5 16.0 134 368-510 100-242 (342)
202 KOG2137 Protein kinase [Signal 95.8 2.9 6.3E-05 43.3 22.3 127 368-507 367-495 (700)
203 PF05536 Neurochondrin: Neuroc 95.7 3 6.5E-05 43.2 33.4 231 47-291 4-261 (543)
204 KOG2137 Protein kinase [Signal 95.7 1.7 3.7E-05 44.9 19.5 249 14-289 238-494 (700)
205 KOG0891 DNA-dependent protein 95.7 5.8 0.00013 47.9 26.2 176 366-546 580-760 (2341)
206 KOG0803 Predicted E3 ubiquitin 95.7 1.7 3.7E-05 49.0 20.9 109 181-289 42-151 (1312)
207 KOG2149 Uncharacterized conser 95.6 0.39 8.5E-06 45.9 13.6 132 395-533 64-195 (393)
208 cd08050 TAF6 TATA Binding Prot 95.6 0.36 7.7E-06 46.7 13.8 150 224-421 181-340 (343)
209 PF10363 DUF2435: Protein of u 95.6 0.098 2.1E-06 39.3 7.8 75 480-555 4-78 (92)
210 COG5116 RPN2 26S proteasome re 95.6 0.31 6.7E-06 48.4 13.0 118 96-232 554-673 (926)
211 PF08767 CRM1_C: CRM1 C termin 95.5 2.5 5.4E-05 40.5 19.4 121 388-508 116-244 (319)
212 PF13001 Ecm29: Proteasome sta 95.4 0.16 3.4E-06 52.1 11.4 181 15-211 237-445 (501)
213 COG5095 TAF6 Transcription ini 95.3 0.58 1.3E-05 42.6 13.1 140 387-531 228-383 (450)
214 PF03224 V-ATPase_H_N: V-ATPas 95.3 1.1 2.4E-05 42.9 16.4 195 48-254 55-273 (312)
215 KOG2549 Transcription initiati 95.3 0.91 2E-05 45.2 15.4 151 374-532 227-395 (576)
216 KOG2759 Vacuolar H+-ATPase V1 95.3 3 6.6E-05 40.2 27.1 197 48-254 65-275 (442)
217 PF08623 TIP120: TATA-binding 95.2 0.1 2.2E-06 43.9 7.5 114 298-443 2-116 (169)
218 KOG0567 HEAT repeat-containing 95.2 1.4 3.1E-05 39.6 14.7 85 98-207 192-278 (289)
219 PF08569 Mo25: Mo25-like; Int 95.0 1.4 3E-05 42.2 15.7 187 62-252 87-285 (335)
220 PF01347 Vitellogenin_N: Lipop 95.0 1.5 3.3E-05 46.7 17.9 161 113-289 414-587 (618)
221 PF14664 RICTOR_N: Rapamycin-i 95.0 3.6 7.7E-05 40.3 18.7 218 23-253 33-272 (371)
222 KOG0567 HEAT repeat-containing 95.0 0.2 4.4E-06 44.8 9.0 90 391-508 189-280 (289)
223 PF12054 DUF3535: Domain of un 94.8 5 0.00011 40.4 21.7 77 108-191 102-179 (441)
224 smart00638 LPD_N Lipoprotein N 94.8 4.8 0.0001 42.5 20.6 146 128-289 390-543 (574)
225 PF00514 Arm: Armadillo/beta-c 94.7 0.06 1.3E-06 33.4 3.8 28 434-461 13-40 (41)
226 cd08050 TAF6 TATA Binding Prot 94.7 0.55 1.2E-05 45.4 12.2 124 374-505 198-337 (343)
227 smart00638 LPD_N Lipoprotein N 94.5 3.3 7.2E-05 43.7 18.7 117 366-504 412-541 (574)
228 PF05536 Neurochondrin: Neuroc 94.4 6.7 0.00015 40.7 20.0 184 366-554 72-266 (543)
229 KOG0889 Histone acetyltransfer 94.4 18 0.00039 45.0 30.9 161 389-556 984-1162(3550)
230 PF10521 DUF2454: Protein of u 94.4 1.2 2.6E-05 41.8 13.5 144 385-532 115-277 (282)
231 PF04118 Dopey_N: Dopey, N-ter 94.3 1.1 2.3E-05 42.4 12.6 146 406-555 25-173 (307)
232 PF12830 Nipped-B_C: Sister ch 94.1 3.1 6.7E-05 36.3 14.6 72 95-167 10-81 (187)
233 PF01603 B56: Protein phosphat 94.0 7.2 0.00016 38.9 26.2 262 193-514 103-376 (409)
234 KOG0413 Uncharacterized conser 94.0 11 0.00023 40.7 26.8 129 367-510 947-1075(1529)
235 PF14631 FancD2: Fanconi anaem 93.8 12 0.00026 43.6 21.8 118 424-550 426-543 (1426)
236 KOG1048 Neural adherens juncti 93.7 9.5 0.00021 40.1 18.9 364 97-508 237-641 (717)
237 COG5095 TAF6 Transcription ini 93.7 0.36 7.8E-06 43.9 7.9 131 406-550 212-360 (450)
238 PF07571 DUF1546: Protein of u 93.6 0.33 7.1E-06 36.6 6.6 58 363-421 18-78 (92)
239 PF00514 Arm: Armadillo/beta-c 93.6 0.17 3.6E-06 31.4 4.2 29 479-507 12-40 (41)
240 KOG2149 Uncharacterized conser 93.5 1.3 2.9E-05 42.4 11.7 116 435-555 60-176 (393)
241 KOG2122 Beta-catenin-binding p 93.4 17 0.00038 41.3 22.6 89 371-463 505-602 (2195)
242 KOG4199 Uncharacterized conser 93.1 7.7 0.00017 36.4 29.3 132 367-506 300-442 (461)
243 KOG0889 Histone acetyltransfer 93.1 30 0.00066 43.2 32.6 162 131-292 984-1156(3550)
244 cd03568 VHS_STAM VHS domain fa 93.1 3 6.5E-05 34.5 12.0 110 364-485 17-129 (144)
245 PF11698 V-ATPase_H_C: V-ATPas 92.9 0.53 1.2E-05 37.0 6.9 70 131-209 43-115 (119)
246 COG5098 Chromosome condensatio 92.8 14 0.00029 38.4 28.8 107 97-212 303-418 (1128)
247 PF12830 Nipped-B_C: Sister ch 92.8 5.2 0.00011 34.9 13.8 76 130-217 7-82 (187)
248 PF11698 V-ATPase_H_C: V-ATPas 92.7 0.52 1.1E-05 37.0 6.6 69 434-508 44-115 (119)
249 PF03224 V-ATPase_H_N: V-ATPas 92.2 11 0.00023 36.2 16.5 146 134-292 108-270 (312)
250 cd03568 VHS_STAM VHS domain fa 92.2 2.4 5.1E-05 35.1 10.3 79 475-553 33-114 (144)
251 KOG1822 Uncharacterized conser 92.2 29 0.00062 40.7 33.8 192 49-252 52-250 (2067)
252 PF08389 Xpo1: Exportin 1-like 92.1 1.1 2.4E-05 37.2 8.7 124 367-503 4-148 (148)
253 KOG3961 Uncharacterized conser 91.7 0.51 1.1E-05 40.7 5.9 85 477-561 112-198 (262)
254 KOG0891 DNA-dependent protein 91.6 41 0.00089 41.2 30.7 246 32-292 460-720 (2341)
255 cd03569 VHS_Hrs_Vps27p VHS dom 91.5 3.1 6.6E-05 34.4 10.3 79 476-554 38-119 (142)
256 KOG4524 Uncharacterized conser 91.5 17 0.00037 39.3 17.6 80 474-553 798-880 (1014)
257 KOG1851 Uncharacterized conser 91.3 5 0.00011 45.5 14.1 154 46-213 1524-1682(1710)
258 PF11919 DUF3437: Domain of un 91.3 0.6 1.3E-05 34.8 5.3 57 406-463 3-59 (90)
259 PF12231 Rif1_N: Rap1-interact 91.2 16 0.00035 36.0 28.5 80 428-509 269-353 (372)
260 PF11701 UNC45-central: Myosin 91.0 1.9 4.1E-05 36.4 8.8 141 98-247 8-156 (157)
261 PF12783 Sec7_N: Guanine nucle 91.0 3.3 7E-05 35.5 10.5 107 145-251 36-147 (168)
262 KOG2081 Nuclear transport regu 91.0 19 0.00042 36.4 32.8 147 364-523 402-552 (559)
263 cd03567 VHS_GGA VHS domain fam 90.9 4.3 9.3E-05 33.3 10.4 76 477-552 36-119 (139)
264 PF12530 DUF3730: Protein of u 90.8 12 0.00027 33.9 19.5 206 229-492 9-216 (234)
265 KOG0803 Predicted E3 ubiquitin 90.8 16 0.00035 41.7 17.7 89 223-313 43-132 (1312)
266 smart00288 VHS Domain present 90.7 3.9 8.4E-05 33.3 10.1 79 475-553 33-115 (133)
267 PF11864 DUF3384: Domain of un 90.5 22 0.00048 36.3 30.5 128 369-510 195-333 (464)
268 cd03561 VHS VHS domain family; 90.4 6.1 0.00013 32.2 11.1 89 432-524 36-130 (133)
269 PF12054 DUF3535: Domain of un 90.4 20 0.00044 36.1 16.8 79 363-444 99-179 (441)
270 PF12530 DUF3730: Protein of u 90.2 14 0.00031 33.6 21.7 190 27-234 13-216 (234)
271 KOG1048 Neural adherens juncti 90.2 27 0.00059 36.9 17.5 113 129-251 230-350 (717)
272 PF09324 DUF1981: Domain of un 89.9 1.9 4.1E-05 32.0 6.9 57 231-287 28-84 (86)
273 cd03567 VHS_GGA VHS domain fam 89.8 10 0.00022 31.2 11.9 86 433-524 38-130 (139)
274 PF12765 Cohesin_HEAT: HEAT re 89.7 0.63 1.4E-05 28.9 3.6 41 415-457 2-42 (42)
275 PF00790 VHS: VHS domain; Int 89.5 5.3 0.00012 32.9 10.2 80 474-553 37-122 (140)
276 cd03561 VHS VHS domain family; 89.3 11 0.00023 30.8 12.0 76 388-466 36-116 (133)
277 KOG2011 Sister chromatid cohes 88.9 43 0.00092 37.2 20.6 96 407-509 260-356 (1048)
278 KOG0946 ER-Golgi vesicle-tethe 88.6 37 0.00079 36.1 39.0 157 86-252 75-243 (970)
279 PF14631 FancD2: Fanconi anaem 88.5 58 0.0013 38.3 23.5 112 126-249 430-541 (1426)
280 KOG4500 Rho/Rac GTPase guanine 88.3 27 0.00058 34.2 23.6 73 432-509 314-391 (604)
281 PF09324 DUF1981: Domain of un 88.3 3.4 7.3E-05 30.6 7.3 70 177-246 14-84 (86)
282 PF00790 VHS: VHS domain; Int 87.9 10 0.00022 31.2 10.8 76 387-465 40-121 (140)
283 KOG2085 Serine/threonine prote 87.9 15 0.00033 35.5 12.8 85 176-260 337-424 (457)
284 PF12765 Cohesin_HEAT: HEAT re 87.7 1.1 2.4E-05 27.9 3.7 40 116-155 2-42 (42)
285 PF04510 DUF577: Family of unk 87.6 14 0.0003 31.2 11.0 147 389-549 3-164 (174)
286 smart00185 ARM Armadillo/beta- 87.5 0.69 1.5E-05 28.3 2.8 28 434-461 13-40 (41)
287 PF03542 Tuberin: Tuberin; In 87.5 29 0.00063 33.7 15.9 117 194-315 211-329 (356)
288 PF12231 Rif1_N: Rap1-interact 87.4 31 0.00068 34.0 24.7 147 406-552 148-306 (372)
289 PF11701 UNC45-central: Myosin 87.3 4.2 9.2E-05 34.3 8.3 131 366-505 20-156 (157)
290 cd03569 VHS_Hrs_Vps27p VHS dom 87.3 7 0.00015 32.2 9.4 78 432-513 40-119 (142)
291 PF11707 Npa1: Ribosome 60S bi 87.2 30 0.00064 33.5 16.3 174 109-292 42-238 (330)
292 PF14664 RICTOR_N: Rapamycin-i 87.1 32 0.0007 33.8 25.0 160 126-301 20-186 (371)
293 PF08713 DNA_alkylation: DNA a 86.8 3.1 6.7E-05 37.2 7.8 69 388-465 119-187 (213)
294 PF07571 DUF1546: Protein of u 86.7 5.3 0.00012 30.0 7.6 70 490-560 17-89 (92)
295 KOG2973 Uncharacterized conser 86.5 8 0.00017 35.9 9.8 104 394-508 8-111 (353)
296 KOG2759 Vacuolar H+-ATPase V1 86.2 35 0.00076 33.3 24.7 70 433-508 366-438 (442)
297 PF12074 DUF3554: Domain of un 85.8 36 0.00078 33.0 18.8 201 49-257 23-242 (339)
298 PF12397 U3snoRNP10: U3 small 85.7 5.4 0.00012 31.9 7.8 73 429-509 2-75 (121)
299 KOG0929 Guanine nucleotide exc 85.5 79 0.0017 36.7 19.2 203 104-316 1048-1280(1514)
300 KOG1837 Uncharacterized conser 85.2 6.1 0.00013 44.8 10.1 91 109-208 1520-1610(1621)
301 KOG2199 Signal transducing ada 84.6 12 0.00027 35.8 10.3 95 364-466 25-122 (462)
302 KOG2199 Signal transducing ada 84.6 11 0.00024 36.0 10.1 112 406-527 26-138 (462)
303 smart00185 ARM Armadillo/beta- 84.2 2.1 4.5E-05 26.1 3.8 29 479-507 12-40 (41)
304 PF12333 Ipi1_N: Rix1 complex 84.1 4.6 0.0001 31.1 6.4 61 472-532 4-65 (102)
305 PF08161 NUC173: NUC173 domain 84.1 4.6 9.9E-05 35.5 7.2 72 486-557 7-78 (198)
306 PF08713 DNA_alkylation: DNA a 83.3 33 0.00071 30.6 14.8 130 62-218 62-193 (213)
307 smart00288 VHS Domain present 83.3 23 0.0005 28.8 12.3 89 372-465 22-114 (133)
308 PF14668 RICTOR_V: Rapamycin-i 83.1 3.4 7.3E-05 29.4 4.8 55 408-464 3-60 (73)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 82.8 16 0.00035 28.7 9.4 74 385-461 33-114 (115)
310 cd03572 ENTH_epsin_related ENT 82.6 23 0.00049 28.2 10.4 72 178-249 36-118 (122)
311 KOG4199 Uncharacterized conser 82.3 46 0.001 31.6 26.4 286 188-532 115-427 (461)
312 cd03572 ENTH_epsin_related ENT 82.1 12 0.00025 29.9 8.0 89 116-209 21-119 (122)
313 PF12333 Ipi1_N: Rix1 complex 81.7 5.9 0.00013 30.5 6.2 63 425-491 3-65 (102)
314 cd06561 AlkD_like A new struct 81.3 14 0.00031 32.4 9.5 66 392-465 108-173 (197)
315 COG5101 CRM1 Importin beta-rel 81.2 72 0.0016 33.1 28.3 296 176-510 566-910 (1053)
316 cd00197 VHS_ENTH_ANTH VHS, ENT 80.9 23 0.00049 27.9 9.6 77 126-208 32-114 (115)
317 PF11935 DUF3453: Domain of un 79.7 49 0.0011 30.2 13.7 87 179-265 42-160 (239)
318 PF12783 Sec7_N: Guanine nucle 78.5 41 0.00089 28.7 11.1 99 406-509 36-147 (168)
319 PF04388 Hamartin: Hamartin pr 78.3 90 0.002 33.5 15.5 90 179-270 69-160 (668)
320 KOG2256 Predicted protein invo 78.2 92 0.002 32.5 21.6 177 177-395 279-474 (661)
321 cd03565 VHS_Tom1 VHS domain fa 77.9 38 0.00082 27.9 10.8 89 433-525 38-133 (141)
322 PF04388 Hamartin: Hamartin pr 77.6 12 0.00025 40.1 8.8 91 388-488 69-161 (668)
323 PF03542 Tuberin: Tuberin; In 77.1 75 0.0016 30.9 15.2 92 447-549 211-303 (356)
324 PF03130 HEAT_PBS: PBS lyase H 76.2 4.3 9.2E-05 22.3 2.9 14 449-462 1-14 (27)
325 KOG2973 Uncharacterized conser 75.5 9.5 0.0002 35.4 6.4 67 437-510 7-73 (353)
326 PF14225 MOR2-PAG1_C: Cell mor 75.1 70 0.0015 29.6 17.0 173 127-315 60-238 (262)
327 KOG1848 Uncharacterized conser 74.9 1.7E+02 0.0036 33.8 25.5 118 389-509 997-1133(1610)
328 PF12074 DUF3554: Domain of un 74.2 89 0.0019 30.3 17.0 193 90-292 19-236 (339)
329 KOG3961 Uncharacterized conser 74.1 16 0.00036 31.9 7.1 92 434-530 115-209 (262)
330 PF12397 U3snoRNP10: U3 small 73.9 25 0.00053 28.0 8.0 73 385-463 2-75 (121)
331 PF12612 TFCD_C: Tubulin foldi 73.0 42 0.00092 29.4 9.9 134 407-550 22-159 (193)
332 COG5537 IRR1 Cohesin [Cell div 70.3 73 0.0016 32.8 11.5 99 142-251 286-387 (740)
333 PF14668 RICTOR_V: Rapamycin-i 70.2 18 0.00039 25.8 5.5 53 450-509 4-59 (73)
334 PF14961 BROMI: Broad-minded p 69.6 69 0.0015 36.1 12.0 70 97-166 165-237 (1296)
335 PF01465 GRIP: GRIP domain; I 68.8 11 0.00023 24.1 3.7 36 89-124 3-38 (46)
336 PF11841 DUF3361: Domain of un 68.3 72 0.0016 26.8 10.6 98 195-292 32-132 (160)
337 COG4912 Predicted DNA alkylati 67.7 25 0.00054 31.1 6.9 83 374-464 102-185 (222)
338 smart00567 EZ_HEAT E-Z type HE 67.5 9.2 0.0002 21.4 3.0 15 447-461 1-15 (30)
339 KOG1877 Putative transmembrane 67.5 1.9E+02 0.0041 31.4 16.1 100 142-249 67-173 (819)
340 PF09759 Atx10homo_assoc: Spin 66.5 26 0.00057 26.9 6.1 56 409-465 3-62 (102)
341 KOG2122 Beta-catenin-binding p 66.4 2.7E+02 0.0058 32.7 20.6 98 407-510 453-561 (2195)
342 PF07539 DRIM: Down-regulated 64.4 41 0.0009 27.7 7.4 30 179-208 16-45 (141)
343 KOG1087 Cytosolic sorting prot 64.0 27 0.00058 35.2 7.4 78 476-553 35-116 (470)
344 KOG2213 Apoptosis inhibitor 5/ 63.7 1.5E+02 0.0033 28.9 23.3 236 63-318 36-296 (460)
345 KOG1087 Cytosolic sorting prot 63.2 54 0.0012 33.1 9.3 102 100-212 12-115 (470)
346 smart00755 Grip golgin-97, Ran 63.1 9.8 0.00021 24.2 2.7 34 90-124 3-36 (46)
347 PF10350 DUF2428: Putative dea 62.8 1.3E+02 0.0028 27.8 12.8 160 363-530 59-250 (255)
348 KOG1877 Putative transmembrane 60.6 2.6E+02 0.0055 30.5 14.6 132 185-316 61-204 (819)
349 cd03565 VHS_Tom1 VHS domain fa 59.1 1E+02 0.0022 25.4 12.9 110 364-485 18-134 (141)
350 PF14222 MOR2-PAG1_N: Cell mor 58.8 2.4E+02 0.0052 29.6 34.2 218 85-311 27-275 (552)
351 cd06561 AlkD_like A new struct 57.9 1.3E+02 0.0028 26.2 12.3 76 436-521 108-183 (197)
352 PF04078 Rcd1: Cell differenti 57.4 51 0.0011 30.2 7.3 119 389-509 95-219 (262)
353 COG5369 Uncharacterized conser 56.8 44 0.00096 33.8 7.2 134 369-508 407-545 (743)
354 smart00582 RPR domain present 56.6 54 0.0012 26.0 6.9 98 99-209 6-107 (121)
355 COG5537 IRR1 Cohesin [Cell div 56.4 2.5E+02 0.0055 29.2 14.7 82 228-311 282-363 (740)
356 PF12612 TFCD_C: Tubulin foldi 55.9 1.4E+02 0.0031 26.1 12.0 108 91-209 5-116 (193)
357 KOG0929 Guanine nucleotide exc 54.6 4.3E+02 0.0093 31.3 17.7 231 48-292 1036-1299(1514)
358 PF12243 CTK3: CTD kinase subu 53.2 1.3E+02 0.0028 24.7 11.5 98 436-547 11-117 (139)
359 PF14868 DUF4487: Domain of un 53.0 2.9E+02 0.0064 28.9 24.0 80 383-464 473-554 (559)
360 COG5369 Uncharacterized conser 51.9 23 0.00049 35.7 4.5 131 409-546 406-542 (743)
361 KOG2005 26S proteasome regulat 51.6 3.2E+02 0.007 28.9 15.7 63 132-206 416-478 (878)
362 PF11919 DUF3437: Domain of un 51.2 24 0.00052 26.4 3.5 56 448-509 4-59 (90)
363 PF13925 Katanin_con80: con80 50.6 48 0.001 28.2 5.8 53 113-165 46-103 (164)
364 PF08146 BP28CT: BP28CT (NUC21 50.3 1.5E+02 0.0033 24.8 10.6 81 449-533 37-121 (153)
365 KOG2038 CAATT-binding transcri 49.5 2.9E+02 0.0063 29.7 11.8 141 368-527 244-389 (988)
366 PF14225 MOR2-PAG1_C: Cell mor 49.1 2.2E+02 0.0048 26.4 20.0 127 389-532 111-240 (262)
367 KOG2213 Apoptosis inhibitor 5/ 47.6 2.8E+02 0.0061 27.2 19.6 51 238-292 41-91 (460)
368 PF10193 Telomere_reg-2: Telom 45.0 1.2E+02 0.0027 23.8 6.9 80 182-261 5-90 (114)
369 KOG2011 Sister chromatid cohes 43.8 5.3E+02 0.012 29.2 22.2 86 218-305 279-369 (1048)
370 PF08324 PUL: PUL domain; Int 43.4 2.6E+02 0.0055 25.9 10.2 99 406-507 124-230 (268)
371 PF08620 RPAP1_C: RPAP1-like, 42.4 41 0.00088 24.0 3.4 32 132-163 40-71 (73)
372 cd07064 AlkD_like_1 A new stru 42.2 2.5E+02 0.0054 25.0 17.8 159 32-219 28-189 (208)
373 PF04869 Uso1_p115_head: Uso1 42.1 3.2E+02 0.0069 26.2 10.5 150 49-218 35-194 (312)
374 PF13981 SopA: SopA-like centr 41.9 1.9E+02 0.0042 23.6 8.4 57 236-292 68-124 (135)
375 KOG3036 Protein involved in ce 41.9 2.7E+02 0.006 25.4 12.8 111 182-293 126-249 (293)
376 PF14911 MMS22L_C: S-phase gen 41.7 3.5E+02 0.0077 26.6 11.0 136 386-528 208-349 (373)
377 smart00582 RPR domain present 41.4 1.8E+02 0.0038 23.0 9.3 60 438-511 5-64 (121)
378 cd03562 CID CID (CTD-Interacti 40.3 1.8E+02 0.0038 22.7 9.2 70 475-544 33-103 (114)
379 PF05327 RRN3: RNA polymerase 39.6 4.8E+02 0.01 27.5 27.9 56 474-529 341-398 (563)
380 cd03562 CID CID (CTD-Interacti 39.6 1.8E+02 0.0039 22.6 7.7 72 387-461 35-107 (114)
381 KOG1789 Endocytosis protein RM 39.2 5.1E+02 0.011 29.4 12.0 168 143-319 1737-1912(2235)
382 KOG1848 Uncharacterized conser 38.3 7.2E+02 0.016 29.2 25.4 99 105-210 854-959 (1610)
383 cd00872 PI3Ka_I Phosphoinositi 38.2 57 0.0012 27.9 4.4 16 446-461 84-99 (171)
384 PF06371 Drf_GBD: Diaphanous G 37.9 1.6E+02 0.0034 25.4 7.4 56 144-208 129-186 (187)
385 PHA02855 anti-apoptotic membra 37.6 2.5E+02 0.0053 23.6 7.6 61 449-512 49-110 (180)
386 PF04078 Rcd1: Cell differenti 37.4 3.4E+02 0.0073 25.1 13.2 107 193-299 109-226 (262)
387 PF12422 Condensin2nSMC: Conde 36.9 2.5E+02 0.0054 23.5 10.9 94 65-158 43-146 (152)
388 PF11841 DUF3361: Domain of un 36.7 2.6E+02 0.0056 23.6 12.4 96 111-213 32-135 (160)
389 PF14676 FANCI_S2: FANCI solen 35.0 2.8E+02 0.006 23.4 11.8 121 112-246 37-157 (158)
390 cd07064 AlkD_like_1 A new stru 34.6 3.3E+02 0.0072 24.2 15.5 75 181-261 116-190 (208)
391 PF11707 Npa1: Ribosome 60S bi 34.5 4.3E+02 0.0094 25.5 19.5 172 62-250 37-237 (330)
392 PF14228 MOR2-PAG1_mid: Cell m 34.5 7.8E+02 0.017 28.5 25.9 69 434-508 504-572 (1120)
393 COG5231 VMA13 Vacuolar H+-ATPa 34.0 4.2E+02 0.0092 25.3 18.9 71 434-508 357-428 (432)
394 KOG3036 Protein involved in ce 33.9 3.7E+02 0.0081 24.6 14.2 139 15-161 26-198 (293)
395 COG5234 CIN1 Beta-tubulin fold 33.7 2.1E+02 0.0045 30.4 8.0 169 87-266 240-433 (993)
396 KOG2753 Uncharacterized conser 33.5 4.4E+02 0.0095 25.3 13.5 117 383-510 59-178 (378)
397 PF05327 RRN3: RNA polymerase 33.1 6.1E+02 0.013 26.8 18.4 37 106-143 87-123 (563)
398 PF06685 DUF1186: Protein of u 32.5 4E+02 0.0087 24.5 13.5 152 128-308 28-195 (249)
399 PF12243 CTK3: CTD kinase subu 32.4 2.8E+02 0.0062 22.8 8.9 102 100-209 15-119 (139)
400 PF08146 BP28CT: BP28CT (NUC21 32.2 3E+02 0.0066 23.0 9.5 77 367-443 37-118 (153)
401 PF06371 Drf_GBD: Diaphanous G 31.9 2.1E+02 0.0046 24.6 7.3 55 406-461 130-186 (187)
402 KOG3613 Dopey and related pred 31.5 1.8E+02 0.004 34.3 7.9 99 406-508 1501-1621(1749)
403 PLN03060 inositol phosphatase- 31.3 2.4E+02 0.0052 24.9 7.1 41 5-45 62-102 (206)
404 KOG0905 Phosphoinositide 3-kin 31.2 5.4E+02 0.012 29.5 10.9 102 444-553 901-1016(1639)
405 cd00870 PI3Ka_III Phosphoinosi 31.0 1.1E+02 0.0023 26.2 4.8 77 434-527 47-123 (166)
406 KOG1924 RhoA GTPase effector D 30.7 5E+02 0.011 28.1 10.1 30 533-562 266-295 (1102)
407 smart00145 PI3Ka Phosphoinosit 30.4 1.2E+02 0.0025 26.4 5.1 18 445-462 88-105 (184)
408 PF06628 Catalase-rel: Catalas 30.1 1.5E+02 0.0032 20.7 4.7 38 81-118 15-53 (68)
409 PF14663 RasGEF_N_2: Rapamycin 29.8 96 0.0021 24.5 4.2 34 430-463 5-38 (115)
410 PF11640 TAN: Telomere-length 29.2 3.4E+02 0.0074 22.7 10.2 106 97-209 8-140 (155)
411 PF00613 PI3Ka: Phosphoinositi 28.8 39 0.00085 29.3 2.0 16 446-461 90-105 (184)
412 PF08568 Kinetochor_Ybp2: Unch 27.9 7.8E+02 0.017 26.4 12.5 72 12-86 437-513 (633)
413 cd00872 PI3Ka_I Phosphoinositi 27.8 2.4E+02 0.0052 24.1 6.5 45 406-453 85-129 (171)
414 cd00864 PI3Ka Phosphoinositide 27.6 1.5E+02 0.0032 24.9 5.1 31 492-525 84-114 (152)
415 PHA02836 putative transmembran 27.4 2E+02 0.0043 23.0 5.3 39 407-445 102-141 (153)
416 PF10193 Telomere_reg-2: Telom 27.0 1.4E+02 0.003 23.5 4.6 56 476-533 4-62 (114)
417 KOG3252 Uncharacterized conser 27.0 3.2E+02 0.007 23.5 6.7 40 78-123 112-151 (217)
418 PF04869 Uso1_p115_head: Uso1 25.5 3.2E+02 0.0069 26.2 7.5 59 406-464 170-233 (312)
419 PF08324 PUL: PUL domain; Int 25.4 2.3E+02 0.005 26.2 6.7 105 441-548 118-230 (268)
420 PF07539 DRIM: Down-regulated 25.1 3.4E+02 0.0075 22.3 6.7 38 223-263 19-56 (141)
421 PF14663 RasGEF_N_2: Rapamycin 24.9 1.7E+02 0.0037 23.1 4.8 34 476-509 5-38 (115)
422 PF08161 NUC173: NUC173 domain 24.7 4.9E+02 0.011 23.0 16.1 60 194-253 14-73 (198)
423 PF14868 DUF4487: Domain of un 24.0 8.6E+02 0.019 25.6 24.2 117 431-552 432-555 (559)
424 COG4912 Predicted DNA alkylati 23.8 5.3E+02 0.012 23.1 9.3 75 126-213 113-187 (222)
425 PF14961 BROMI: Broad-minded p 23.3 1.2E+03 0.026 27.0 14.5 134 130-272 160-315 (1296)
426 PF14676 FANCI_S2: FANCI solen 23.1 4.6E+02 0.01 22.1 10.6 117 70-204 37-156 (158)
427 KOG1837 Uncharacterized conser 22.7 1.4E+03 0.03 27.5 32.7 82 477-559 1539-1620(1621)
428 PF06812 ImpA-rel_N: ImpA-rela 22.2 2.6E+02 0.0057 19.0 5.3 55 32-88 5-59 (62)
429 PF09759 Atx10homo_assoc: Spin 21.9 1.7E+02 0.0037 22.5 4.0 55 450-510 3-61 (102)
430 cd00864 PI3Ka Phosphoinositide 21.7 4.6E+02 0.0099 21.9 7.0 41 434-484 74-114 (152)
431 PF08158 NUC130_3NT: NUC130/3N 21.1 2.1E+02 0.0046 18.8 3.8 44 417-460 3-46 (52)
432 PF01417 ENTH: ENTH domain; I 20.9 3.5E+02 0.0077 21.5 6.1 69 455-530 22-93 (125)
433 KOG0267 Microtubule severing p 20.6 7.2E+02 0.016 26.7 9.1 98 62-165 650-748 (825)
434 KOG1566 Conserved protein Mo25 20.5 7.5E+02 0.016 23.6 16.0 204 90-303 76-298 (342)
435 PLN00047 photosystem II biogen 20.4 5.9E+02 0.013 23.8 7.7 41 5-45 115-155 (283)
No 1
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-79 Score=578.82 Aligned_cols=547 Identities=56% Similarity=0.953 Sum_probs=514.9
Q ss_pred CCCCCCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhh
Q 008533 4 SVAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (562)
Q Consensus 4 ~~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w 83 (562)
.|.|+|+++.++|+.++|...+|||.+ +|+.+..+|.++...|+|..+|+.||.+.++.+..+|..|+.+|||.++.+|
T Consensus 2 ~~~w~p~e~~l~ql~~lLk~s~Spn~~-~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 2 AMTWQPDEQGLQQLAQLLKNSQSPNSE-TRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred CCCCcccHHHHHHHHHHHHhccCCChH-HHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 589999999999999999999999999 9999999999999999999999999998878899999999999999999999
Q ss_pred ccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
..++++...++|..+++.+.++++.||...+-+|.+|+...+-..||+++|.|.+++.+++.++.++|+.+|..||++..
T Consensus 81 ~~~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa 160 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSA 160 (885)
T ss_pred cCCChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHH
Q 008533 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (562)
..+++++. ++.++-++|.++++++++++.+|..|+.|++.++-..++.+..+++.+++.++.+.+|.++++|+.+|.
T Consensus 161 ~~lds~~~---~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~ 237 (885)
T KOG2023|consen 161 QFLDSDVL---TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCR 237 (885)
T ss_pred HHHhhhcc---cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence 88876543 467899999999999999999999999999999988888888899999999999999999999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhh
Q 008533 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (562)
Q Consensus 244 ~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 323 (562)
+|..+.+..++.+.||++.+++++++.++|.++.|...|.|||.++++.+...+.+.||+++++|+++..|.++++|+-.
T Consensus 238 alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~L 317 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIIL 317 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999999999999999887
Q ss_pred hh-hhhccCCCCCCCCCCcccccccCCCC-------CCCCC--CCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHH
Q 008533 324 VE-AEEDESLPDRDQDLKPRFHSSRLHGS-------ENPED--DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (562)
Q Consensus 324 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~--~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (562)
.+ +++|+.++|.+++|||.+++++..+. |++|| ||||....|+.|+.++.+++.++..+|+++++.++|+
T Consensus 318 L~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 318 LKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred hcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 76 67788999999999999999875443 11111 3444567899999999999999999999999999999
Q ss_pred HHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcc
Q 008533 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (562)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (562)
+.+.+.+++ |.+|++++.++|+|++||.+.+.+|++.++|++++.|.|+.|.||..+||+++|++.|.... ..
T Consensus 398 Lk~~L~~~~---W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~----~~ 470 (885)
T KOG2023|consen 398 LKEHLSSEE---WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD----SR 470 (885)
T ss_pred HHHHcCcch---hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC----Ch
Confidence 999999988 99999999999999999999999999999999999999999999999999999999998753 36
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
.+|+.+++..+++++-|.+.+||++||+|+..+-+.+++.+.||++.|++.|...+..++.+++..+++|||++|+.+|.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccC
Q 008533 554 ELNQVLLS 561 (562)
Q Consensus 554 ~~~~~~~~ 561 (562)
.+.+|.|.
T Consensus 551 ~Ln~~~Yi 558 (885)
T KOG2023|consen 551 ALNKPAYI 558 (885)
T ss_pred hcCcHHHH
Confidence 99998763
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-59 Score=475.54 Aligned_cols=498 Identities=25% Similarity=0.356 Sum_probs=430.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
...|.+++.++++|||+ +|++|++.|+.....+.....|.+++.+ +.++++|++|++++|+.+.++|++++.+.++.
T Consensus 3 ~~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred hhHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 35788999999999999 9999999999877655588889999987 99999999999999999999999999999999
Q ss_pred HHHHHhhhhh-CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC
Q 008533 94 IKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (562)
Q Consensus 94 i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 172 (562)
||..++.++. ++.+.||++.|.+++.|++.+.++.||++++.|+++.+|+++..|+.|+.+|..+.+.++..+.
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~----- 154 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ----- 154 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc-----
Confidence 9999999775 6799999999999999999987779999999999999999999999999999999998887654
Q ss_pred CCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch--hh----HHhchHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 008533 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP--SA----LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (562)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~--~~----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 246 (562)
.++..+.+.|.+++++++..||..|+++++.++...+ .. +...++.+++.+-....++|.+....++++|.
T Consensus 155 ---~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 155 ---PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred ---hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 3578899999999999887799999999999998875 33 33344555555555666777888899999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhcC--CCChhHHHHHhhhHHHhhcc-ccchhhHHhhhhHHHHHHHhhcccChhhHhh
Q 008533 247 LLIEVRPSFLEPHLRNLFEYMLQVNK--DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (562)
Q Consensus 247 ~l~~~~~~~~~~~l~~i~~~~~~~~~--~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 323 (562)
.+++..++.+++++.+++++.+.... +.++.+|..|++++.++++. +...+...++...+++.++..|..-++|.+|
T Consensus 232 El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 99999999999999999999998754 56789999999999999987 3344556678999999999999877766333
Q ss_pred hhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCC
Q 008533 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (562)
.++| +.|+|++ -+..+.|.+++++++..+|+ .++|.+++.+.+.+++++
T Consensus 312 ~~~d-------------------------~~ded~~-----~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~ 361 (1075)
T KOG2171|consen 312 SNED-------------------------DLDEDDE-----ETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTE 361 (1075)
T ss_pred cccc-------------------------ccccccc-----cCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCC
Confidence 3221 1111111 14577899999999999986 889999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHH
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 482 (562)
|+.|+||+++|+.+++||.+.+.+.++++++.+++.|+|+||+||.+||.++|+++..+++. ..+.+.+.+.+
T Consensus 362 ---w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~----iqk~~~e~l~~ 434 (1075)
T KOG2171|consen 362 ---WKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPE----IQKKHHERLPP 434 (1075)
T ss_pred ---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHH----HHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999998765 45666677777
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 483 GLLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 483 ~l~~~l~d~-~~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
.++..+.++ +++|+.+|+.++-++.+.| ++.+.||++.+|+.++..+.. ....++..+..+||.+|.++++.| .||
T Consensus 435 aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F-~pY 513 (1075)
T KOG2171|consen 435 ALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF-IPY 513 (1075)
T ss_pred HHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh-HhH
Confidence 888888775 6899999999999999998 789999999999965555554 456677799999999999999766 999
Q ss_pred c
Q 008533 560 L 560 (562)
Q Consensus 560 ~ 560 (562)
|
T Consensus 514 ~ 514 (1075)
T KOG2171|consen 514 F 514 (1075)
T ss_pred H
Confidence 7
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-52 Score=399.52 Aligned_cols=484 Identities=28% Similarity=0.458 Sum_probs=418.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-----------HHh
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~--~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i-----------~~~ 82 (562)
++.++|..++|||.. +|+.|+++|.++.. .|.|+..|..+|.+. ..++..|.+|++.|||.+ ...
T Consensus 2 ~~~~~le~tlSpD~n-~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~-~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQN-VRKRAEKQLEQAQSQNFPQFLVLLSEVLAND-NSSDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcc-hHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-CCcHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 467888889999999 99999999999875 588999999999974 788999999999999988 357
Q ss_pred hccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhh
Q 008533 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICE 160 (562)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~ 160 (562)
|-.++.+.|+++|..++..|+.+.+..+..++++++.|+..+ |.+.||++++.+.....++.+ .++++++.++|++|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998 669999999999999887654 589999999999999
Q ss_pred cchhcccccCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhchhhHHhc--hHHHHHHHhhhccCCCHH
Q 008533 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSAE 236 (562)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~ 236 (562)
+..+... +...+.++..+++++.. ++..||.+|++||..-..+....|... ...+|+.++...+.+|.+
T Consensus 160 ~i~pevl-------~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~ 232 (859)
T KOG1241|consen 160 DIDPEVL-------EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEE 232 (859)
T ss_pred cCCHHHH-------HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHH
Confidence 9877532 23568899999999987 466899999999998877765444332 235788899999999999
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHH-HHHHHHhhcCCCChhHHHHHhhhHHHhhccccc-----------------hhh
Q 008533 237 VRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-----------------HEN 298 (562)
Q Consensus 237 ~~~~~~~~L~~l~~~~~~~~~~~l~~-i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~-----------------~~~ 298 (562)
++.+++.||+++...+++++.+|+.+ ++...+..+++.+++|...++|||.++|+.+.. ...
T Consensus 233 i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~f 312 (859)
T KOG1241|consen 233 IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYF 312 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHH
Confidence 99999999999999999999999986 999999999999999999999999999876321 233
Q ss_pred HHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHH
Q 008533 299 LKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVL 378 (562)
Q Consensus 299 ~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l 378 (562)
.+..++.++|.++..|...+ +++|+| .|++.++|..||..+
T Consensus 313 a~~a~~~v~P~Ll~~L~kqd-----------------------------------e~~d~D----dWnp~kAAg~CL~l~ 353 (859)
T KOG1241|consen 313 ARQALQDVVPVLLELLTKQD-----------------------------------EDDDDD----DWNPAKAAGVCLMLF 353 (859)
T ss_pred HHHHHhHhhHHHHHHHHhCC-----------------------------------CCcccc----cCcHHHHHHHHHHHH
Confidence 44556678888887765322 111222 399999999999999
Q ss_pred HhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 008533 379 SNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (562)
Q Consensus 379 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l 457 (562)
++..|++++++++|++.+.+++++ |+.|++|.+++|++.+|.. +.+.+.+++.+|.++..+.|++-.||.++.|++
T Consensus 354 A~~~~D~Iv~~Vl~Fiee~i~~pd---wr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtl 430 (859)
T KOG1241|consen 354 AQCVGDDIVPHVLPFIEENIQNPD---WRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTL 430 (859)
T ss_pred HHHhcccchhhhHHHHHHhcCCcc---hhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHH
Confidence 999999999999999999999999 9999999999999999884 566899999999999999999999999999999
Q ss_pred HHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc---------ccccccHHHHHHHHHHH
Q 008533 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---------EELAPRLEIILQHLMMA 528 (562)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~---------~~~~~~l~~il~~L~~~ 528 (562)
|++++++++.+ .+..++..++..++..|+| +|+|..++||++..|++.+. +...|+++.|++.|++.
T Consensus 431 grI~d~l~e~~---~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 431 GRIADFLPEAI---INQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHHHhhchhhc---ccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99999998653 5688899999999999998 69999999999999998761 24567999999999999
Q ss_pred Hhhhh--hhHHH-HHHHHHHHHHHHHhhh
Q 008533 529 FGKYQ--RRNLR-IVYDAIGTLADAVGFE 554 (562)
Q Consensus 529 l~~~~--~~~~~-~~~~~l~~l~~~~~~~ 554 (562)
....+ +.++| .++++|+.+++...++
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 98854 45566 9999999999887754
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-41 Score=316.51 Aligned_cols=476 Identities=18% Similarity=0.264 Sum_probs=392.2
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-----------HHhhccCChhh
Q 008533 24 QISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTAYKSMSPSN 90 (562)
Q Consensus 24 ~~s~d~~~~r~~A~~~L~~~~~~--~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i-----------~~~w~~l~~~~ 90 (562)
.+|||.. +|..||.+|.++... ..|+..+.+.|++. +..++.|..|++.|||.+ ...|..++++.
T Consensus 14 vLspD~n-~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~-ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~ 91 (858)
T COG5215 14 VLSPDPN-ARLRAEAQLLELQSGDFEQFISLLVQVLCDL-NSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHES 91 (858)
T ss_pred cCCCCCC-ccccHHHHHHHhccccHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHH
Confidence 4899999 999999999998763 45788888999964 789999999999999988 35799999999
Q ss_pred HHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhhcchhcccc
Q 008533 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDS 168 (562)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~~~~~~~~ 168 (562)
|+++|...++.|+++.+..-+.+++.++.|+..+ +.+.||+++..+.....++.| ..+..++.++++.|+...+....
T Consensus 92 k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li 171 (858)
T COG5215 92 KEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLI 171 (858)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHH
Confidence 9999999999999999999999999999999998 669999999999999988765 56788999999999987663211
Q ss_pred cCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhchhhHH--hchHHHHHHHhhhccCCCHHHHHHHHHH
Q 008533 169 DVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGSVNQFIMLMPSALF--VSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~l~~~~~~~~~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (562)
...+.++-.++.+-.+ ++..+|.+|++|+..-+.+....+. .....+|+..+...+.++.++..+++-|
T Consensus 172 -------~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 172 -------QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred -------HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHH
Confidence 1234555556655544 4678999999999885554433332 2334678889999999999999999999
Q ss_pred HHHHHhhCccchhhhHHH-HHHHHHhhcCCCChhHHHHHhhhHHHhhccccch---------------hhHHhhhhHHHH
Q 008533 245 FNLLIEVRPSFLEPHLRN-LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPH---------------ENLKEFLPRLVP 308 (562)
Q Consensus 245 L~~l~~~~~~~~~~~l~~-i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~---------------~~~~~~l~~l~~ 308 (562)
|+++...+++++.+|+++ +..++.+.+++.++++...|.|||+++|+.+... +..+..+..++|
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP 324 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLP 324 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHH
Confidence 999999999999999985 5677778899999999999999999999874221 122233556777
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (562)
.++..+...++ +.++| .|++..+|..||...++..|+.++.
T Consensus 325 ~lL~LL~~q~e-----------------------------------d~~~D----dWn~smaA~sCLqlfaq~~gd~i~~ 365 (858)
T COG5215 325 ELLSLLEKQGE-----------------------------------DYYGD----DWNPSMAASSCLQLFAQLKGDKIMR 365 (858)
T ss_pred HHHHHHHhcCC-----------------------------------Ccccc----ccchhhhHHHHHHHHHHHhhhHhHH
Confidence 77766653221 11222 4999999999999999999999999
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
.++.++.+.+++++ |+.|++|.+++|++.++.. +.+.+++++.+|.+.....|+.-.|+..++|++|+++.+.+..
T Consensus 366 pVl~FvEqni~~~~---w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 366 PVLGFVEQNIRSES---WANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHHHHhccCch---hhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999999875 4557899999999999999999999999999999999999887
Q ss_pred cCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-------cccccccHHHHHHHHHHHHhhhhh-hHHH-
Q 008533 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-------AEELAPRLEIILQHLMMAFGKYQR-RNLR- 538 (562)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~-------~~~~~~~l~~il~~L~~~l~~~~~-~~~~- 538 (562)
++| ..++.......+..+.| +|.+..+.+|++.+++++. ...+.++++.|+..|++..+.... .+.|
T Consensus 443 i~p---~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~ 518 (858)
T COG5215 443 ISP---CGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRV 518 (858)
T ss_pred cCc---cccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 654 55677788888888887 6888999999999999876 245678899999999988877543 3455
Q ss_pred HHHHHHHHHHHHHhhh
Q 008533 539 IVYDAIGTLADAVGFE 554 (562)
Q Consensus 539 ~~~~~l~~l~~~~~~~ 554 (562)
.+++++|+++.-+++.
T Consensus 519 s~fsaLgtli~~~~d~ 534 (858)
T COG5215 519 SLFSALGTLILICPDA 534 (858)
T ss_pred HHHHHHHHHHhhcchh
Confidence 8999999999877654
No 5
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-39 Score=321.20 Aligned_cols=498 Identities=20% Similarity=0.326 Sum_probs=393.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc--------
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~-------- 85 (562)
.+.+.+++.++.++|.. .|++||++|+++.+.|+|...|++|+.++ +.+..+|+.|++.|||.|.+.|+.
T Consensus 3 ~~~l~~~~~~T~d~d~~-~R~~AE~~L~q~~K~pgFv~~lLqIi~~d-~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~ 80 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAK-ERKAAEQQLNQLEKQPGFVSSLLQIIMDD-GVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF 80 (1010)
T ss_pred hHHHHHHHHHhcCCChH-HHHHHHHHHHHhhcCCcHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence 46789999999999988 99999999999999999999999999974 778899999999999999999985
Q ss_pred -CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 86 -MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 86 -l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
+.++.|..||++++..+...+..+|.....++..|...++++.||++++.+...+++++....-+||.|+..+++.+..
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 5788999999999999998899999999999999999999999999999999999999999999999999999999885
Q ss_pred cccccCCCCCcchhHhhHHHHHHhh----cCCC---HHHHHHHHHHHHHHHhh-chhhHHh--chHHHHHHHhhhccC--
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFF----QSPH---TSLRKLSLGSVNQFIML-MPSALFV--SMDQYLQGLFLLSND-- 232 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l----~~~~---~~vr~~al~~l~~~~~~-~~~~~~~--~~~~~l~~l~~~~~~-- 232 (562)
....+ +..+...+..++|.+++.+ .+++ .++.+..+|++.+++.+ +|..+.. .+..|++.+...++-
T Consensus 161 k~~ee-R~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpv 239 (1010)
T KOG1991|consen 161 KKDEE-RQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPV 239 (1010)
T ss_pred ccccc-cccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCC
Confidence 43222 1222345556666665544 3333 46788999999988874 5655432 345555554443221
Q ss_pred ------CC---------HHHHHHHHHHHHHHHhhCccc---------h-----hhhHHHHHHHHHhhc----CC--CChh
Q 008533 233 ------PS---------AEVRKLVCAAFNLLIEVRPSF---------L-----EPHLRNLFEYMLQVN----KD--TDDD 277 (562)
Q Consensus 233 ------~~---------~~~~~~~~~~L~~l~~~~~~~---------~-----~~~l~~i~~~~~~~~----~~--~~~~ 277 (562)
-| .+.++.++-.|.++.+.+++. | .++.+.+.+.+++.+ .. ..+.
T Consensus 240 P~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~r 319 (1010)
T KOG1991|consen 240 PVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDR 319 (1010)
T ss_pred ChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 11 357788888898888765432 1 122223333333321 11 3467
Q ss_pred HHHHHhhhHHHhhccccchhhHHhhhhHHHHHH-HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCC
Q 008533 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (562)
Q Consensus 278 v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (562)
+-..++.++..++....+++.++|+++.++... ++.|+.+++|.+.|++||.| |||.++... +
T Consensus 320 vl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~E-------YiR~~~Di~--------e- 383 (1010)
T KOG1991|consen 320 VLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYE-------YIRKKFDIF--------E- 383 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHH-------HHHhcCchh--------c-
Confidence 888899999999888788999999999988765 79999999999999988876 777655332 1
Q ss_pred CCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC-----CCCCCchhHHHHHHHHHHHhhcchh--hhhh
Q 008533 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIK--GLYP 429 (562)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~i~~~~~~--~~~~ 429 (562)
+..+++.+|..++..++...|++.++.+++++.+.+++ ++..+.+.+++|++.+|++++.+.+ .+..
T Consensus 384 ------d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~ 457 (1010)
T KOG1991|consen 384 ------DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS 457 (1010)
T ss_pred ------ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH
Confidence 13467888999999999999999999999999988872 2234599999999999999976632 2234
Q ss_pred hHHH-HHHHHhhhcCCCChhHHHHHHHHHHHhHH-HHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHH
Q 008533 430 HLSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSK-FIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATL 506 (562)
Q Consensus 430 ~l~~-~~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~vr~~a~~al~~l 506 (562)
.++. +++.+++.++++....|..|||++++++. .++ ....+..+++...++|. |++-.||..|+-||..|
T Consensus 458 ~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-------d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 458 QMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-------DPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred HHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 4444 56799999999999999999999999994 332 46778899999999998 77789999999999999
Q ss_pred HHHcc---ccccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 008533 507 EEEAA---EELAPRLEIILQHLMMAFGKYQRRNLRIVYDA 543 (562)
Q Consensus 507 ~~~~~---~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~ 543 (562)
+.++. +.+.++++++|+.|+++.+......+..+++.
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~ 570 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEK 570 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99884 56999999999999999998765555544443
No 6
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-34 Score=277.97 Aligned_cols=499 Identities=19% Similarity=0.270 Sum_probs=373.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc-------
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------- 85 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~------- 85 (562)
+++.+.+.|.++++||.. +|+.||+.|.++..+++|...++.++.+. ..+.++|..|++.+||.++++|..
T Consensus 3 ~le~l~~~l~qTl~pdps-~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~-~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~ 80 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPS-VRKPAERALRSLEGQQNYPLLLLNLVANG-QQDPQIRVAAAVYFKNYIKRNWIPAEDSPIK 80 (960)
T ss_pred cHHHHHHHHHhcCCCCCc-cCchHHHHHHHhccCCCchHHHHHHHhcc-CcChhHHHHHHHHHHHHHHhccCcCCCCccc
Confidence 578899999999999999 99999999999999999999999999863 669999999999999999999974
Q ss_pred CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
+.++.++.||..++.++-+....+...++.+++.|++.|+++.||+++|.++..++++|-++..+.+.+-..+.+.+...
T Consensus 81 i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 81 IIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred cchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 67789999999999999988999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccCCCCC---cchhHhhHHHHHHhhcC---------CCH-------HHHHHHHHHHHHHH-hhchhhHHhchHHHHHH
Q 008533 166 LDSDVPGLA---ECPINIFLPRLLQFFQS---------PHT-------SLRKLSLGSVNQFI-MLMPSALFVSMDQYLQG 225 (562)
Q Consensus 166 ~~~~~~~~~---~~~~~~il~~l~~~l~~---------~~~-------~vr~~al~~l~~~~-~~~~~~~~~~~~~~l~~ 225 (562)
++++ .++ ...+..+-.++...+.. ++. .+....+|.+.++. ..+|+.+.+++..+|..
T Consensus 161 frSd--aL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 161 FRSD--ALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccH--HHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 7653 111 01112111122222221 222 22334445555553 35789999999999998
Q ss_pred HhhhccCC------C-------HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC-----CChhHHHHHhhhHH
Q 008533 226 LFLLSNDP------S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWH 287 (562)
Q Consensus 226 l~~~~~~~------~-------~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~-----~~~~v~~~a~~~l~ 287 (562)
+.+.+... + .++|..+|+.+.-.+..+++.|.+++++++..++....+ .++.....|++|+.
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt 318 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLT 318 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 88765411 1 367889999999999999999999999999888776433 45667889999999
Q ss_pred HhhccccchhhH--HhhhhHHHHHH-HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccch
Q 008533 288 SYFEAQLPHENL--KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (562)
Q Consensus 288 ~~~~~~~~~~~~--~~~l~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (562)
.+++.+...+.+ ...+..+.+.+ ++.+...++|.|.+|+++.| |||. |.|..|-|
T Consensus 319 ~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~ple-------YiRR-----------DlEGsDvd---- 376 (960)
T KOG1992|consen 319 SVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLE-------YIRR-----------DLEGSDVD---- 376 (960)
T ss_pred HHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHH-------HHHH-----------hcccCCcc----
Confidence 999874443322 23455555544 68888899999999887765 6662 22222222
Q ss_pred hcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc---CCCCCCchhHHHHHHHHHHHhhcch---------hhhhh---
Q 008533 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS---ASGDEAWKDREAAVLALGAIAEGCI---------KGLYP--- 429 (562)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~r~aal~~l~~i~~~~~---------~~~~~--- 429 (562)
+.|++|.+.+..|+..+...+.+.+-..++..++ .+.+.+|+.++.++..+.+++.... ..+.+
T Consensus 377 -TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~ 455 (960)
T KOG1992|consen 377 -TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD 455 (960)
T ss_pred -hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence 6899999999999999976666666666655555 3335569999999999998885421 11112
Q ss_pred -hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 430 -HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 430 -~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+..+++|.+...=..++|.++..++.-+ ..+ |++...+++-.+++.+++.|..+...|-..|+.++..+..
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~-------~~F-R~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAIKYI-------YTF-RNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHHHhhHHhccCccccccchhhccccee-------eee-cccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence 2233444443333356799998885422 222 4455688899999999999998889999999999998875
Q ss_pred Hc---------cccccccHHHHHHHHHHHHhhhhh----hHHHHHHHHHHH
Q 008533 509 EA---------AEELAPRLEIILQHLMMAFGKYQR----RNLRIVYDAIGT 546 (562)
Q Consensus 509 ~~---------~~~~~~~l~~il~~L~~~l~~~~~----~~~~~~~~~l~~ 546 (562)
.. +..+.|++..++..|++.+..++. ..++++++.++.
T Consensus 528 vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 528 VRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISI 578 (960)
T ss_pred cccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHh
Confidence 43 356788999999999988887643 234444444433
No 7
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.8e-28 Score=236.57 Aligned_cols=494 Identities=13% Similarity=0.152 Sum_probs=353.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccC-----C--
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM-----S-- 87 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l-----~-- 87 (562)
+++.+++.++++.|.. +|..||..|.++.++|+|...|++++..+ +.+.++|+.|++.+||.|.+.|..+ +
T Consensus 3 ~ellqcf~qTldada~-~rt~AE~~Lk~leKqPgFv~all~i~s~d-e~~lnvklsAaIYfKNkI~rsWss~~d~~i~~D 80 (970)
T COG5656 3 EELLQCFLQTLDADAG-KRTIAEAMLKDLEKQPGFVMALLHICSKD-EGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKAD 80 (970)
T ss_pred HHHHHHHHHHhccCcc-hhhHHHHHHHHhhcCCcHHHHHHHHHhhc-cCCchhhHHHHHHHhhhhhhhhhhcccCCCCCc
Confidence 6789999999999999 99999999999999999999999999873 6899999999999999999999872 2
Q ss_pred --hhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 88 --PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 88 --~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
++.|+.++++++..+..++...|...-.++..|...+++ +.|+ ++|...+++.+++..+...|+.|+.++++....
T Consensus 81 ek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayRw 159 (970)
T COG5656 81 EKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYRW 159 (970)
T ss_pred ccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHhh
Confidence 344555566666655666777787777777778888865 8999 999999999999999999999999999999887
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcC----C---CHHHHHHHHHHHHHHHh-hchhhHHh--chHHHHHHHhhhccC--
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQS----P---HTSLRKLSLGSVNQFIM-LMPSALFV--SMDQYLQGLFLLSND-- 232 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~----~---~~~vr~~al~~l~~~~~-~~~~~~~~--~~~~~l~~l~~~~~~-- 232 (562)
....+. ...+..+..++|.+.+.-+. . ..++....++.+...+. .+|+.+.. .+-.|.+..+...+.
T Consensus 160 k~ndeq-~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i~qkpl 238 (970)
T COG5656 160 KYNDEQ-VDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPL 238 (970)
T ss_pred hccchH-hhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHHHcCCC
Confidence 654321 11123455566666553322 2 34667788888877765 35654432 222333322222111
Q ss_pred ------CCH---------HHHHHHHHHHHHHHhhCccchh--------hhHHHHHHHHHhh----c--CCC----ChhHH
Q 008533 233 ------PSA---------EVRKLVCAAFNLLIEVRPSFLE--------PHLRNLFEYMLQV----N--KDT----DDDVA 279 (562)
Q Consensus 233 ------~~~---------~~~~~~~~~L~~l~~~~~~~~~--------~~l~~i~~~~~~~----~--~~~----~~~v~ 279 (562)
-|+ ..++.++-.|.++...+.+... ...-.++|.+++. . +.. -.+..
T Consensus 239 p~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~ 318 (970)
T COG5656 239 PNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIE 318 (970)
T ss_pred CHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHH
Confidence 122 3456677777777665533211 1111244444432 1 111 01234
Q ss_pred HHHhhhHHHhhc-cccchhhHHhhhhHHHHHH-HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCC
Q 008533 280 LEACEFWHSYFE-AQLPHENLKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (562)
Q Consensus 280 ~~a~~~l~~~~~-~~~~~~~~~~~l~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (562)
.+.+.+....|- .+..+..+.|+++-++... ++.++.++++.+.|+.||+| |+|.++..-.
T Consensus 319 LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~e-------yirry~df~d---------- 381 (970)
T COG5656 319 LYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDE-------YIRRYYDFFD---------- 381 (970)
T ss_pred HHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHH-------HHHHhcchhc----------
Confidence 555555554443 3567899999999988865 69999999999999988876 7775543321
Q ss_pred CccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC-----CCCCCchhHHHHHHHHHHHhhcch--hhhhhh
Q 008533 358 DDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCI--KGLYPH 430 (562)
Q Consensus 358 ~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~i~~~~~--~~~~~~ 430 (562)
.+.+..-+|..++-.++...++..+..+++++...++. ++-.+.+..++|+..++++..-.. ..+...
T Consensus 382 -----~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~ 456 (970)
T COG5656 382 -----NGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANV 456 (970)
T ss_pred -----CCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHH
Confidence 12244556667777777777778888899999888842 122458899999999999887322 222333
Q ss_pred HHH-HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 431 LSE-IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 431 l~~-~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
++. +++.+.+.++++.-.+|..||..++++.+.++ ....+-.+++...+++++++-.|+..|+-|+..++.+
T Consensus 457 me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfk-------d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~ 529 (970)
T COG5656 457 MEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFK-------DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFN 529 (970)
T ss_pred HHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhc
Confidence 333 67899999999999999999999999977664 3566788899999999998899999999999999876
Q ss_pred c--cccccccHHHHHHHHHHHHhhhhhhHHHHHH
Q 008533 510 A--AEELAPRLEIILQHLMMAFGKYQRRNLRIVY 541 (562)
Q Consensus 510 ~--~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~ 541 (562)
- .+.+..++|..|+.|+.+-+..+-..+..++
T Consensus 530 ~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 530 EQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred hhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 5 5788999999999999988776544444333
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-27 Score=242.36 Aligned_cols=471 Identities=19% Similarity=0.214 Sum_probs=354.1
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc------CC----ChHHHHHHHHhhccCCCHHHHHHHHHH----HHHH
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ------FP----DFNNYLAFILARAEGKSVEIRQAAGLL----LKNN 78 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~------~~----~~~~~l~~il~~~~~~~~~~R~~a~~~----lk~~ 78 (562)
.+..|.+++.. ++|.+ +|+-|.-.+.++.. .. ..-..++.++.+ +..+.+|+.-+-. .|+.
T Consensus 37 ~l~~L~~i~~~--~~~p~-~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~--E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILAT--SADPQ-VRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQS--ETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhc--CCChH-HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhc
Confidence 55556666664 45666 99999888877431 11 234456666765 7788888766544 4444
Q ss_pred HHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC---cCchHHHHHHHHHHhccCChhHHhHHHHHH
Q 008533 79 LRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDAL 155 (562)
Q Consensus 79 i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~---~~~w~~ll~~l~~~l~~~~~~~~~~al~~l 155 (562)
+-..|+. +.+.|+++..++++..|..+..++..+...-+ ..+.+++.+.+.+++++++..+|..+++++
T Consensus 112 l~e~WPe--------ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~ 183 (1075)
T KOG2171|consen 112 LPEKWPE--------LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRAL 183 (1075)
T ss_pred cccchHH--------HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 4445654 67789999999999999999999999988753 346779999999999998766999999999
Q ss_pred HHHhhcchhcccccCCCCCcchhHhhHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhcc
Q 008533 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN 231 (562)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 231 (562)
+.+....+..-. . -.....++|.++..+ ++.+.+.-..++++|..+....|+.+.+++..+++......+
T Consensus 184 ~a~~~~~~~~~~-~-----~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~ 257 (1075)
T KOG2171|consen 184 GAFAEYLENNKS-E-----VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK 257 (1075)
T ss_pred HHHHHHhccchH-H-----HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Confidence 999988752110 0 023455666665555 446777889999999999999999999999999988877765
Q ss_pred C--CCHHHHHHHHHHHHHHHhhCccc---hhhhHHHHHHHHHhhcCCCCh----------------hHHHHHhhhHHHhh
Q 008533 232 D--PSAEVRKLVCAAFNLLIEVRPSF---LEPHLRNLFEYMLQVNKDTDD----------------DVALEACEFWHSYF 290 (562)
Q Consensus 232 ~--~~~~~~~~~~~~L~~l~~~~~~~---~~~~l~~i~~~~~~~~~~~~~----------------~v~~~a~~~l~~~~ 290 (562)
+ -++.+|..++++++.+++..|.. ..++.+.+++.++..+.+.++ .-...|.+.+-.++
T Consensus 258 n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA 337 (1075)
T KOG2171|consen 258 NKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA 337 (1075)
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH
Confidence 4 45899999999999999885543 345677888888776432211 12334444444444
Q ss_pred ccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh
Q 008533 291 EAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (562)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~ 370 (562)
.. -..+.+ ++.+++.+-.+++ +.+|..|++
T Consensus 338 ~~-L~g~~v---~p~~~~~l~~~l~----------------------------------------------S~~w~~R~A 367 (1075)
T KOG2171|consen 338 LH-LGGKQV---LPPLFEALEAMLQ----------------------------------------------STEWKERHA 367 (1075)
T ss_pred hc-CChhhe---hHHHHHHHHHHhc----------------------------------------------CCCHHHHHH
Confidence 33 011111 1222222211111 225889999
Q ss_pred HHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHH-HHHHHhhhcCC-C
Q 008533 371 SAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAFLIPLLDD-K 445 (562)
Q Consensus 371 a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~-~~~~l~~~l~d-~ 445 (562)
+.-+++.+++..++ ..++.+++.+...++|++ +++|.||+.++|+++..+...+..+..+ +.|.+...+.+ .
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dph---prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPH---PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 99999999999877 567889999999999999 9999999999999999998888665555 45577788876 5
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR-ILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~-l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~ 524 (562)
+++|...|+-++-++.+.++.. ...+|++.+|+..+.. +++..+.||..+..+|+.++..+.+.|.||++.+|+.
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~----~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~ 520 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKS----ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL 520 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 7899999999999999887653 6899999999955554 4566799999999999999999999999999999999
Q ss_pred HHHHHhhhhh---hHHH-HHHHHHHHHHHHHhhhhhccc
Q 008533 525 LMMAFGKYQR---RNLR-IVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 525 L~~~l~~~~~---~~~~-~~~~~l~~l~~~~~~~~~~~~ 559 (562)
|...+.+.++ +.+| .+++|++.++.++|++.|.|+
T Consensus 521 L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~ 559 (1075)
T KOG2171|consen 521 LKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL 559 (1075)
T ss_pred HHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh
Confidence 9999998763 3455 799999999999999988886
No 9
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.97 E-value=3.1e-27 Score=233.14 Aligned_cols=494 Identities=20% Similarity=0.252 Sum_probs=357.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc--------
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-------- 85 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~-------- 85 (562)
-+.+..+|.+.+|||.. +|.+|+.+|+++...++|-..|.++..+. ...-+.|+.|.+.||+.+.++|..
T Consensus 3 ~~~ii~~L~~~ls~d~~-vr~~AE~~l~qle~~~~f~~aL~~va~~~-~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 3 KQAIIELLSGSLSADQN-VRSQAETQLKQLELTEGFGVALAEVAANK-DASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHHHhhcCCChh-HHHHHHHHHhccccchHHHHHHHHHHhCc-ccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 36789999999999999 99999999999999999999999999863 578899999999999999999985
Q ss_pred --CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 86 --MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 86 --l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
.+.+.|..||+.|++.+.+++.++|+.++.+++.|+..++|+.||++++.+.+++++++.+..++|+.+|..+..+.-
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~ 160 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVD 160 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred hcccccCCCCCcchhHhhHHHHHHhh---cCCCHHHHHHH--HHHHHHHHhhch-------h----hHHhchHHHHHHHh
Q 008533 164 QVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLS--LGSVNQFIMLMP-------S----ALFVSMDQYLQGLF 227 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l---~~~~~~vr~~a--l~~l~~~~~~~~-------~----~~~~~~~~~l~~l~ 227 (562)
...... .....++.....+ ...+...|..+ .+.+.++...+. . .+..-+..+++.+-
T Consensus 161 ~ee~~~-------~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~ 233 (1005)
T KOG2274|consen 161 VEEMFF-------VGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILE 233 (1005)
T ss_pred HHHHhc-------ccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321111 1122233333322 23333333333 344444433221 1 11222333343333
Q ss_pred hhc---cCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc----------------------CCCCh------
Q 008533 228 LLS---NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN----------------------KDTDD------ 276 (562)
Q Consensus 228 ~~~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~----------------------~~~~~------ 276 (562)
..+ ...+...+...++++..+.++.|..+.++...+++..++.. .+.++
T Consensus 234 h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~ 313 (1005)
T KOG2274|consen 234 HPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVE 313 (1005)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChH
Confidence 322 23445788889999999999999999888887777665421 11222
Q ss_pred hHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCC
Q 008533 277 DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (562)
Q Consensus 277 ~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (562)
+.....++|+..+++.....+.++..++.+++.++..++.+++.++.|.+|++. ++ .+++
T Consensus 314 ~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~-------fV------------~dEd- 373 (1005)
T KOG2274|consen 314 TLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQ-------FV------------ADED- 373 (1005)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHH-------hh------------ccCC-
Confidence 234567788888877633344555567778888888889999999999877654 22 1111
Q ss_pred CCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC-------CCCCCchhHHHHHHHHHHHhhcchhhhhh
Q 008533 357 DDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-------SGDEAWKDREAAVLALGAIAEGCIKGLYP 429 (562)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-------~~~~~~~~r~aal~~l~~i~~~~~~~~~~ 429 (562)
+ ..+.|..+...+..+...+|...+..+.....+.++. .+..+|+..++.+.+......+ +....
T Consensus 374 -~-----~~~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd 445 (1005)
T KOG2274|consen 374 -D-----GYTARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDD 445 (1005)
T ss_pred -C-----CchhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHH
Confidence 1 1356777888888888888876555555554444432 2233477777777766655533 22344
Q ss_pred hHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHH
Q 008533 430 HLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLE 507 (562)
Q Consensus 430 ~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~ 507 (562)
.+..++..+...+. ...|..-.+|.|+++++++... ...+.+..++...+..+. |..+.+|.+|+.++..++
T Consensus 446 ~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~------~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~ 519 (1005)
T KOG2274|consen 446 KLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTV------INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC 519 (1005)
T ss_pred HHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc
Confidence 55556666666665 4568887899999999998754 346777788888877764 446788888888887777
Q ss_pred HHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 508 EEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 508 ~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
....+.++.|.+++.|..+..+..++++-.++|+|+.+++.-+
T Consensus 520 --~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp 562 (1005)
T KOG2274|consen 520 --KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP 562 (1005)
T ss_pred --CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh
Confidence 3567889999999999999999999999999999998876433
No 10
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.4e-25 Score=213.78 Aligned_cols=512 Identities=16% Similarity=0.211 Sum_probs=335.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc-----CChhhH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQ 91 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~-----l~~~~~ 91 (562)
+.+.|++..|||.. ++|.||++|.+..++|||...|..|..+. +.+-++|-+|++.+||-|.+.|.+ +++++|
T Consensus 2 vvq~Lq~Ats~d~~-v~k~AE~qLr~WEtqPGF~~~L~sI~l~~-t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK 79 (978)
T KOG1993|consen 2 VVQVLQQATSQDHI-VVKPAEAQLRQWETQPGFFSKLYSIFLSK-TNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEK 79 (978)
T ss_pred HHHHHHHhcCCCcc-cchhHHHHHHhhccCCcHHHHHHHHHhcc-ccceeeeeehhhhHhcchhHHhhcCCcccCCHHHH
Confidence 57889999999999 99999999999999999999999998863 778999999999999999999985 899999
Q ss_pred HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC----ChhHHhHHHHHHHHHhhcchhccc
Q 008533 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~----~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
..||..++..+.++++.+..+.|.+++.||+.|+|..||+++|.|.+.+++. |....+..+.++..+.+..+..-.
T Consensus 80 ~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~RL 159 (978)
T KOG1993|consen 80 DFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKRL 159 (978)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999876 778888999999999998775311
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCC------------CH-------HHHHHHHHHHHHHHhh---chh--hHHhchHHHH
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSP------------HT-------SLRKLSLGSVNQFIML---MPS--ALFVSMDQYL 223 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~------------~~-------~vr~~al~~l~~~~~~---~~~--~~~~~~~~~l 223 (562)
...+.+|......+++.+...+-++ +. +.-.-+++++..++.+ -|. .+.+.+..++
T Consensus 160 ~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse~~eRl~~F~ 239 (978)
T KOG1993|consen 160 LADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSEFFERLLQFL 239 (978)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHH
Confidence 1111122122233333222211111 11 1122344555544432 121 1223333333
Q ss_pred HH----HhhhccCCC----HHHHHHHHH----HHHHHHhhCccchhh--hHHHHHHHHHhhcCC-------------CCh
Q 008533 224 QG----LFLLSNDPS----AEVRKLVCA----AFNLLIEVRPSFLEP--HLRNLFEYMLQVNKD-------------TDD 276 (562)
Q Consensus 224 ~~----l~~~~~~~~----~~~~~~~~~----~L~~l~~~~~~~~~~--~l~~i~~~~~~~~~~-------------~~~ 276 (562)
+. +....+... .++....|. .+..+.+..+-.|.. ..+..+++...-..+ ..+
T Consensus 240 e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe 319 (978)
T KOG1993|consen 240 ELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFE 319 (978)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccccccccHH
Confidence 22 111122111 122233333 344455555544444 222333333222111 112
Q ss_pred hHHHHHhhhHHHhh--cc-c-------------cchh---hH------HhhhhHHHHHHH-hhcccChhhHhhhhhhhcc
Q 008533 277 DVALEACEFWHSYF--EA-Q-------------LPHE---NL------KEFLPRLVPVLL-SNMIYADDDESLVEAEEDE 330 (562)
Q Consensus 277 ~v~~~a~~~l~~~~--~~-~-------------~~~~---~~------~~~l~~l~~~l~-~~l~~~~~~~~~~~~~~~~ 330 (562)
+.-..++..+..+. .. + ...+ .+ .+-+..+...++ .++..+++|.++|..||++
T Consensus 320 ~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~ 399 (978)
T KOG1993|consen 320 EFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDPEG 399 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcChHH
Confidence 33333433333221 11 0 0001 01 123344555555 4567889999999877754
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCC------CCC
Q 008533 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS------GDE 404 (562)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~------~~~ 404 (562)
|+. + +...| -.+++|-+|...+..+-..+++-+.|.++..+.+..+-. +..
T Consensus 400 -------~~~-------------E-q~~~d--wey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~ 456 (978)
T KOG1993|consen 400 -------WVL-------------E-QSGGD--WEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLT 456 (978)
T ss_pred -------hhh-------------h-ccccc--ceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHH
Confidence 211 1 01111 234789999988888888888777777777775544322 111
Q ss_pred CchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC---CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHH
Q 008533 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (562)
Q Consensus 405 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il 481 (562)
.--.+.|...++|..+....+. -+|-..+...+++.+.. ....+|...+|.+|.+...- ...+..+-++
T Consensus 457 a~L~KDAiYaa~g~~a~~l~~~-~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq-------~~~e~k~l~Y 528 (978)
T KOG1993|consen 457 ALLLKDAIYAAFGLAAYELSNI-LDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQ-------QKLELKPLLY 528 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhee-------chHhHHHHHH
Confidence 2345666666777666555432 23333344455555543 33568899999999999842 2456677889
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHHHHHc---cccccccHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHhhhhh
Q 008533 482 MGLLKRILDT-NKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFELN 556 (562)
Q Consensus 482 ~~l~~~l~d~-~~~vr~~a~~al~~l~~~~---~~~~~~~l~~il~~L~~~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~ 556 (562)
..+++.++|. +..||..++.++..+++.. ++.|.||++.+...+++++...++- .+..++..+++++..+++..
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I- 607 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI- 607 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-
Confidence 9999999987 6889999999999999875 6899999999999999999987764 45589999999999999765
Q ss_pred ccccCC
Q 008533 557 QVLLSC 562 (562)
Q Consensus 557 ~~~~~~ 562 (562)
.||..|
T Consensus 608 ~P~~~~ 613 (978)
T KOG1993|consen 608 APYAST 613 (978)
T ss_pred hHHHHH
Confidence 587543
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.8e-24 Score=202.08 Aligned_cols=457 Identities=16% Similarity=0.182 Sum_probs=338.8
Q ss_pred CCCCHHHHHHHHHHHHH-hhc----C-CC---hHH-HHHHHHhhccCCCHHHHHHHHHHHHHHHH----HhhccCChhhH
Q 008533 26 SPSSTADKSQIWQQLQQ-YSQ----F-PD---FNN-YLAFILARAEGKSVEIRQAAGLLLKNNLR----TAYKSMSPSNQ 91 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~-~~~----~-~~---~~~-~l~~il~~~~~~~~~~R~~a~~~lk~~i~----~~w~~l~~~~~ 91 (562)
+.|.. .|+.|---|++ ++. . ++ |+. .+++-+. +.++-+|-..++++...+. .+|+
T Consensus 59 ~~d~~-~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~~lg---d~~~lIr~tvGivITTI~s~~~~~~wp------- 127 (885)
T KOG2023|consen 59 SEDVP-TRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLHGLG---DASPLIRATVGIVITTIASTGGLQHWP------- 127 (885)
T ss_pred ccchh-HHHHhhhhHhccccccccCCChHHHHHHHHHHHhhcc---CchHHHHhhhhheeeeeecccccccch-------
Confidence 33555 78888877765 432 1 22 332 2333333 5677999999988877774 3564
Q ss_pred HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc--------CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~--------~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
.+.+.|.+.|.+++......+..++.+|++-. .....+-++|.+.+.+++++|..|.-|+.|+..+.-.-.
T Consensus 128 -elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 -ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred -hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 36678888898888788888888888887642 124456689999999999999999999999988776555
Q ss_pred hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHH
Q 008533 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (562)
..+- ..+..+++.++.+.+|++++||+..+.++..+.+..|+.+.++++.+++.++...++.|+++.-.+|+
T Consensus 207 qal~--------~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 207 QALY--------VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred HHHH--------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHH
Confidence 4332 25788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC--ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc---ccchhhHHh-----------------
Q 008533 244 AFNLLIEVR--PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHENLKE----------------- 301 (562)
Q Consensus 244 ~L~~l~~~~--~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~---~~~~~~~~~----------------- 301 (562)
.+..+++.. .+.+.||+++++|.++..+.-.+.+..... .--+. +...+.++|
T Consensus 279 Fwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~-----~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~e 353 (885)
T KOG2023|consen 279 FWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLK-----NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDE 353 (885)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhc-----CccccccCCchhhhccchhhhchhccCccccccc
Confidence 999999864 567899999999999886543332221110 00000 000000110
Q ss_pred --------------------------------hhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCC
Q 008533 302 --------------------------------FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (562)
Q Consensus 302 --------------------------------~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (562)
+-+.+++.+++.++..
T Consensus 354 DdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~-------------------------------- 401 (885)
T KOG2023|consen 354 DDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEH-------------------------------- 401 (885)
T ss_pred cccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHH--------------------------------
Confidence 1112233333322200
Q ss_pred CCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc-hh
Q 008533 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IK 425 (562)
Q Consensus 350 ~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~-~~ 425 (562)
. ..+.|.+|.++.-+++.+++.+-+ ..+|.++|++.+++.+.. +-+|..+++.|+..+.-. .+
T Consensus 402 ----L------~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk---plVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 402 ----L------SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK---PLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred ----c------CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc---cceeeeeeeeHhhhhhhHhcC
Confidence 0 123599999999999999998743 567889999999999988 899999999999888644 23
Q ss_pred hhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 008533 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFA 504 (562)
Q Consensus 426 ~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~vr~~a~~al~ 504 (562)
.-..|+..++..+++.+-|.+.+|+.+||.+++.+-+...+ ..-+|+..|+..+..+++.- ...+ .--..|++
T Consensus 469 ~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~-----eLVp~l~~IL~~l~~af~kYQ~KNL-lILYDAIg 542 (885)
T KOG2023|consen 469 SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE-----ELVPYLEYILDQLVFAFGKYQKKNL-LILYDAIG 542 (885)
T ss_pred ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhhcce-ehHHHHHH
Confidence 33578888888899999999999999999999999887654 35789999999999888642 1222 23677889
Q ss_pred HHHHHcccccc--ccHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 505 TLEEEAAEELA--PRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 505 ~l~~~~~~~~~--~~l~~il~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
++++.++..+. .|++.+|+.|+...+.- +++.+--++||++.+++++|..| .||
T Consensus 543 tlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF-~P~ 600 (885)
T KOG2023|consen 543 TLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGF-LPY 600 (885)
T ss_pred HHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccc-ccc
Confidence 99998877665 37888888888877764 35667789999999999999866 776
No 12
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.3e-21 Score=184.24 Aligned_cols=495 Identities=17% Similarity=0.220 Sum_probs=329.4
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 008533 15 NEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (562)
Q Consensus 15 ~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~ 92 (562)
+.+++++.+...| |.. .|++|..++++++..|+.|+.|.+++... ++++.+|..+...|...++..+...+..+..
T Consensus 3 ddiEqav~a~ndp~vdsa-~KqqA~~y~~qiKsSp~aw~Icie~l~~~-ts~d~vkf~clqtL~e~vrekyne~nl~elq 80 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSA-TKQQAIEYLNQIKSSPNAWEICIELLINE-TSNDLVKFYCLQTLIELVREKYNEANLNELQ 80 (980)
T ss_pred hHHHHHHHhhCCCcccHH-HHHHHHHHHHhhcCCccHHHHHHHHHHhh-cccchhhhhhHHHHHHHHHHhhccCCHHHHH
Confidence 4567788887776 777 99999999999999999999999999963 6999999999999999998888889999999
Q ss_pred HHHHHHhhhhh-----CC----chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhhcc
Q 008533 93 YIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDI 162 (562)
Q Consensus 93 ~i~~~ll~~l~-----~~----~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~~ 162 (562)
.+|..+...++ ++ .+.++++++++++.++-.+++..|+.++..+...+.-++. .-....+.++..|-.++
T Consensus 81 lvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEi 160 (980)
T KOG2021|consen 81 LVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEI 160 (980)
T ss_pred HHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHh
Confidence 99999988663 33 6789999999999999999999999999999888865431 11333344444443333
Q ss_pred hhcccccCC------C----CC-cchhHhhHHHHHHhhc---C-CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHh
Q 008533 163 PQVLDSDVP------G----LA-ECPINIFLPRLLQFFQ---S-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (562)
Q Consensus 163 ~~~~~~~~~------~----~~-~~~~~~il~~l~~~l~---~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (562)
.+..-.+.+ . .+ +..+.++.....+.++ . .++++-..++.|++.+++|+.-.+..+ +.+++.++
T Consensus 161 ad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaN-d~f~nLLy 239 (980)
T KOG2021|consen 161 ADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIAN-DYFLNLLY 239 (980)
T ss_pred hhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhc-hhHHHHHH
Confidence 221100000 0 01 1233444444444442 2 378899999999999999875332221 22344444
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCccch---------------------------------------------------
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFL--------------------------------------------------- 256 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~--------------------------------------------------- 256 (562)
..+. -+++|.++|.|+..++.+.-+-.
T Consensus 240 ~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~l 317 (980)
T KOG2021|consen 240 KFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQL 317 (980)
T ss_pred HHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhh
Confidence 4333 24555555555555444321110
Q ss_pred ------------hhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc----ccchhhHHhhhhHHHHHHHhhcccChhh
Q 008533 257 ------------EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDD 320 (562)
Q Consensus 257 ------------~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~l~~~~~~ 320 (562)
...+..+++++++.+.+.++++....+.||..+... +......+.++..++..+...+++.+..
T Consensus 318 nseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 318 NSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred hhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 011223445555555555555555555555543322 1122233345556666666666654421
Q ss_pred HhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC
Q 008533 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA 400 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~ 400 (562)
. |+ |+.. ++|++...-.+|..-...++.++..-++..+..+-..+...+.+
T Consensus 398 ~--nd--------------------------dn~t-g~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~n 448 (980)
T KOG2021|consen 398 F--ND--------------------------DNVT-GDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMN 448 (980)
T ss_pred h--cc--------------------------cCCC-CchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 0 10 1101 11112223367888888888888877766666666666666665
Q ss_pred CCCCCchhHHHHHHHHHHHhhcchh--------hhh--hhHHHHHHHHhhh--cCCCChhHHHHHHHHHHHhHHHHhhhc
Q 008533 401 SGDEAWKDREAAVLALGAIAEGCIK--------GLY--PHLSEIVAFLIPL--LDDKFPLIRSISCWTLSRFSKFIVQDI 468 (562)
Q Consensus 401 ~~~~~~~~r~aal~~l~~i~~~~~~--------~~~--~~l~~~~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (562)
....+|...+.|+..+..++++.+. ++. ..+...++.+... +..+|+.|.--.+..+-|+.+++..
T Consensus 449 s~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~-- 526 (980)
T KOG2021|consen 449 SKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFST-- 526 (980)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhc--
Confidence 5456699999999999999988742 111 2333455554443 3578999999999999999998864
Q ss_pred CCCcchhhHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh------h------h
Q 008533 469 GHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY------Q------R 534 (562)
Q Consensus 469 ~~~~~~~~~~~il~~l~~--~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~------~------~ 534 (562)
...+++-++..++. .+++.+.+||.+|.+.+.++++..+..+.||.+.+++.+.+++... + .
T Consensus 527 ----esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~f 602 (980)
T KOG2021|consen 527 ----ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIF 602 (980)
T ss_pred ----chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccc
Confidence 46688888888874 6778899999999999999999999999999999999999999321 1 1
Q ss_pred hHHHHHHHHHHHHHH
Q 008533 535 RNLRIVYDAIGTLAD 549 (562)
Q Consensus 535 ~~~~~~~~~l~~l~~ 549 (562)
..+..++|++|.++.
T Consensus 603 ddqlyIfEtiGviI~ 617 (980)
T KOG2021|consen 603 DDQLYIFETIGVIIT 617 (980)
T ss_pred cccceeeecceEEEe
Confidence 234456777766543
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.92 E-value=2e-21 Score=192.83 Aligned_cols=473 Identities=14% Similarity=0.148 Sum_probs=320.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
+.+-..|.+|..-|-+.+++.-..+..+.-..+...+++.|.|.++.|++.|..|+|-++..-+..+...++..|+..+-
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~ 95 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNML 95 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhc
Confidence 67888999999999888888766777777777778899999999999999999999999977666677777777776655
Q ss_pred cCChhHHhHHHHHHHHHhhcchhccccc----------------------------------------CCCCCcchhHhh
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSD----------------------------------------VPGLAECPINIF 181 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~----------------------------------------~~~~~~~~~~~i 181 (562)
++..+.|..+-..|.......++...+. +.+++-..-..+
T Consensus 96 s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~i 175 (1233)
T KOG1824|consen 96 SGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSI 175 (1233)
T ss_pred cchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHH
Confidence 5444455544444444444443311100 000000111222
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhCccchhhhH
Q 008533 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (562)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~l 260 (562)
+..++--++++...||+.|+.+++.+..+.+..+. ..+++.+...+.. ..+..-+..+++|+.++...+..++.|+
T Consensus 176 l~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly---~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~ 252 (1233)
T KOG1824|consen 176 LKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY---VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHL 252 (1233)
T ss_pred HHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhccc
Confidence 22233333445667999999999999988875443 3345555555443 3355566788999999999999999999
Q ss_pred HHHHHHHHhhc---CCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhc-cCCCCCC
Q 008533 261 RNLFEYMLQVN---KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED-ESLPDRD 336 (562)
Q Consensus 261 ~~i~~~~~~~~---~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~ 336 (562)
+.++|++.+-. ...+++.|..+++.+..+... .+..+.|+.+.++..++.++.+.+......++|++ +..+|.+
T Consensus 253 ~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r--cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~e 330 (1233)
T KOG1824|consen 253 DKIVPLVADYCNKIEEDDDELREYCLQALESFLRR--CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEE 330 (1233)
T ss_pred chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh--ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccc
Confidence 99999988765 667889999999999999876 66788899999999999888776532221111111 1111111
Q ss_pred CCCCcccccccCCCCCCC--CCCCccccchhcHhhhHHHHHHHHHhhhcc---chhhh-------------------hHH
Q 008533 337 QDLKPRFHSSRLHGSENP--EDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPT-------------------LMP 392 (562)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~--~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~-------------------l~~ 392 (562)
|++ ++..||++..|.+|++|.+|+..+.....+ .+... ++.
T Consensus 331 ---------------Dde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~ 395 (1233)
T KOG1824|consen 331 ---------------DDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFH 395 (1233)
T ss_pred ---------------cchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHH
Confidence 111 222344567899999999999877654322 11111 122
Q ss_pred HHHHHHcC----------CC------------------------------CCCchhHHHHHHHHHHHhhcchhhhhhhHH
Q 008533 393 VIQAKLSA----------SG------------------------------DEAWKDREAAVLALGAIAEGCIKGLYPHLS 432 (562)
Q Consensus 393 ~l~~~l~~----------~~------------------------------~~~~~~r~aal~~l~~i~~~~~~~~~~~l~ 432 (562)
...+.+.+ +| ..+.+.|..++..|..++...++.+.++++
T Consensus 396 ~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~ 475 (1233)
T KOG1824|consen 396 AYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIP 475 (1233)
T ss_pred HHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhccc
Confidence 22222211 00 111334555666666677667777788899
Q ss_pred HHHHHHhhhcCCCC--hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 433 EIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 433 ~~~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
.++|.|...|.|.+ ...+..++..+....... +|+...++++.+.+.+..+..|+.+.+...|......+++..
T Consensus 476 slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~----~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi 551 (1233)
T KOG1824|consen 476 SLVPGIIYSLNDKSSSSNLKIDALVFLYSALISH----PPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI 551 (1233)
T ss_pred ccchhhhhhcCCccchHHHHHHHHHHHHHHHhcC----ChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh
Confidence 99999999999854 445555544333332222 344578899999999999999999999999999999999876
Q ss_pred c-------ccccccHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 511 A-------EELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 511 ~-------~~~~~~l~~il~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
+ -...||+.+++...+..+... +.+++..++.|+|.++...| ++.+..
T Consensus 552 rpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e 608 (1233)
T KOG1824|consen 552 RPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE 608 (1233)
T ss_pred cccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh
Confidence 2 346789999999988888765 46778899999999999999 444433
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4e-20 Score=180.20 Aligned_cols=488 Identities=16% Similarity=0.171 Sum_probs=352.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhh----c-CCChH-HHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHhhc----------
Q 008533 22 EQQISPSSTADKSQIWQQLQQYS----Q-FPDFN-NYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYK---------- 84 (562)
Q Consensus 22 ~~~~s~d~~~~r~~A~~~L~~~~----~-~~~~~-~~l~~il~~-~~~~~~~~R~~a~~~lk~~i~~~w~---------- 84 (562)
+++++||.+ +|.+|.+.|.++- + .+.++ +.|+.+-.. -.+.++.+...|...=-+.-....+
T Consensus 224 Eatq~~d~~-i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 224 EATQSPDEE-IQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred ecccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455789999 9999999998842 2 33333 234443221 1367777776665432222111000
Q ss_pred -cCCh-------hhHHHHHHHHhhhhhC-------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHh
Q 008533 85 -SMSP-------SNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHME 149 (562)
Q Consensus 85 -~l~~-------~~~~~i~~~ll~~l~~-------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~ 149 (562)
..+| .....+.+.|++.|.. .++.+...++.|+...++.-..+-.|.++|++.+-++++++..|.
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~re 382 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNRE 382 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhh
Confidence 1222 1223566777877741 367889999999999998877788899999999999999999999
Q ss_pred HHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHh--chHHHHHHHh
Q 008533 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLF 227 (562)
Q Consensus 150 ~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~ 227 (562)
+|..+++.+.+.....-. .+.+.+.+|.++..+.|+...||..+.++|+.++..+|+...+ +....+..+.
T Consensus 383 aavmAFGSIl~gp~~~~L-------t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~ 455 (859)
T KOG1241|consen 383 AAVMAFGSILEGPEPDKL-------TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL 455 (859)
T ss_pred HHHHHHHhhhcCCchhhh-------hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence 999999999987654322 2567889999999999999999999999999999998854432 3456677777
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCcc---------chhhhHHHHHHHHHhhcCC---CChhHHHHHhhhHHHhhccccc
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPS---------FLEPHLRNLFEYMLQVNKD---TDDDVALEACEFWHSYFEAQLP 295 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~---------~~~~~l~~i~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~ 295 (562)
..+.+ .|.+...+|+.+..+++..++ ...++++.|+.-+++.... .+...|..|.+.|.++.+. .
T Consensus 456 ~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~--s 532 (859)
T KOG1241|consen 456 EGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKN--S 532 (859)
T ss_pred HHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHc--C
Confidence 76654 688999999999999876533 2345777888877776543 4456899999999999887 3
Q ss_pred hhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHH
Q 008533 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (562)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (562)
.....+.+.++...++..+...-+. ... +. +|....-.+...-..+|
T Consensus 533 t~~vy~~v~~~~l~il~kl~q~i~~-~~l----------------------------~~----~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 533 TDDVYPMVQKLTLVILEKLDQTISS-QIL----------------------------SL----ADRAQLNELQSLLCNTL 579 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-Hhc----------------------------cH----hhHHHHHHHHHHHHHHH
Confidence 3444444444444443222110000 000 00 01111122444456677
Q ss_pred HHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHH
Q 008533 376 DVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRS 451 (562)
Q Consensus 376 ~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~ 451 (562)
..+...++. .+...++..+.+.+++..+ -.+-+.|+.+++.+++.+++.+..|++.+.|++...|+ -.+..|..
T Consensus 580 q~i~rk~~~~~~~~~d~iM~lflri~~s~~s--~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~ 657 (859)
T KOG1241|consen 580 QSIIRKVGSDIREVSDQIMGLFLRIFESKRS--AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCA 657 (859)
T ss_pred HHHHHHccccchhHHHHHHHHHHHHHcCCcc--ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 777776665 4556888888899988432 56788999999999999999999999999999999994 56788999
Q ss_pred HHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Q 008533 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (562)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l 529 (562)
+|+-.+|.++..+... ..+|.+.++..|+++|+++ +-.|+....++++.++-+.+..|.+|++.++..|...-
T Consensus 658 ~aVglVgdl~raL~~~-----i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 658 AAVGLVGDLARALEDD-----ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999998864 5899999999999999987 46788899999999999999999999999999887776
Q ss_pred hhh-----------hhhHHHHHHHHHHHHHHHHhh----hhhcccc
Q 008533 530 GKY-----------QRRNLRIVYDAIGTLADAVGF----ELNQVLL 560 (562)
Q Consensus 530 ~~~-----------~~~~~~~~~~~l~~l~~~~~~----~~~~~~~ 560 (562)
+.. .++.++.++++...+...++. ...+||+
T Consensus 733 ~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v 778 (859)
T KOG1241|consen 733 SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYV 778 (859)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcch
Confidence 221 123345899999988888883 3556765
No 15
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.89 E-value=3.7e-19 Score=177.25 Aligned_cols=500 Identities=18% Similarity=0.220 Sum_probs=306.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc-----CChhhHH
Q 008533 18 CRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS-----MSPSNQQ 92 (562)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~-----l~~~~~~ 92 (562)
+..+...+|+|.. .++.||+.|+++.++++|..-|..|..+. ..+-++|..|++.+||.|.++|.. +.++++.
T Consensus 7 v~~~~~aqs~~p~-s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~-~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v 84 (947)
T COG5657 7 VKQLDLAQSPDPP-SVKCAEERLRQWEKQHGFALKLLSINLSA-FNSMSLRWAALIQFKNYIDKHWREENGNSILPDENV 84 (947)
T ss_pred HHHHHhhcCCCCc-hHhhHHHHHHhhhccccHHHHHHHHHhcc-ccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccch
Confidence 3445666788998 99999999999999999998899988863 678899999999999999999985 5667777
Q ss_pred HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC
Q 008533 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (562)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 172 (562)
.||..++.++-+.+....-+.|.+++.||..+++..||+++|.|...+++.|..+-.+.+.++..+.+.+...++++ .
T Consensus 85 ~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l~Rsd--~ 162 (947)
T COG5657 85 LIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRLFRSD--A 162 (947)
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhhhccH--H
Confidence 99999999887766666668999999999999999999999999999999888888899999999999988765543 2
Q ss_pred CCcchhHhhHHHHHHhhcC--CCHHHH-----------HHHHHHHHHHHh----hchhhHHhchHHHHHHHhhhccCCCH
Q 008533 173 LAECPINIFLPRLLQFFQS--PHTSLR-----------KLSLGSVNQFIM----LMPSALFVSMDQYLQGLFLLSNDPSA 235 (562)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~--~~~~vr-----------~~al~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (562)
+|......+.+.+.+.+.. +.+.++ ..+++.+.-+.. ..|+.+.++++.+|....+.+...++
T Consensus 163 lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~ 242 (947)
T COG5657 163 LFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNP 242 (947)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcch
Confidence 2222233333333333322 111111 113333332222 24556677777777776666543333
Q ss_pred HHH-------------HHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC-----CChhHHHHHhhhHHHhhcc--ccc
Q 008533 236 EVR-------------KLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA--QLP 295 (562)
Q Consensus 236 ~~~-------------~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~--~~~ 295 (562)
..+ ...++.+..+...+++.+.+++-+.++.++..+.+ ..+-+...++.++....+. +..
T Consensus 243 ~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~k~~irk~ 322 (947)
T COG5657 243 VLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVIKYPIRKT 322 (947)
T ss_pred hhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhhccccHHH
Confidence 333 33556666666777888887777777777665432 2344556667777666663 112
Q ss_pred hhhH----HhhhhHHHHHH-HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh
Q 008533 296 HENL----KEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (562)
Q Consensus 296 ~~~~----~~~l~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~ 370 (562)
.+.+ ...+.+++..+ ++.+...++|.++|+++|.+ |+| ..+. .+ ....+|..
T Consensus 323 ~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~e-------yir---e~s~----~d---------ye~~vr~~ 379 (947)
T COG5657 323 AEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLE-------YIR---EQSK----TD---------YEVNVRPC 379 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHH-------HHH---hhcc----cc---------chhhhhHH
Confidence 2222 23555666666 47778888999999887765 555 1110 11 12357778
Q ss_pred HHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCC-chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-----
Q 008533 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA-WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD----- 444 (562)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d----- 444 (562)
+.+.+..+-..+|+-+.+.+...+.+....++... .+...+++...|.-.+.. ..+-+++..+-..+.+-+.+
T Consensus 380 ~~~~l~~~f~~~~~i~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av-~~~~~~v~~~~~~~~pd~~s~~~~~ 458 (947)
T COG5657 380 IENELKDLFDVFGRIAVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAV-NRMVDFVKFLGSIIYPDLLSPNEII 458 (947)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHhcCccccCcccCc
Confidence 88888877777775445566666666555442000 122222222222111110 00111111111111111111
Q ss_pred --------------------------------------------C--ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH
Q 008533 445 --------------------------------------------K--FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (562)
Q Consensus 445 --------------------------------------------~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (562)
. --.+|.++...+..+.-. +.......+
T Consensus 459 ~~ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~------~~~~~~~le 532 (947)
T COG5657 459 HLRILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFS------VCSKIGLLE 532 (947)
T ss_pred eeEEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc------cccccccHH
Confidence 0 012222222222221110 001222345
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHH
Q 008533 479 KVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-----RNLRIVYDAIGTLADAV 551 (562)
Q Consensus 479 ~il~~l~~~l~d~-~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~-----~~~~~~~~~l~~l~~~~ 551 (562)
+++-.+++.+... +..-+.....++++++...++.+.|....+++.|.++...... ......++.|+.++...
T Consensus 533 nl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~~~ 611 (947)
T COG5657 533 NLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVFLK 611 (947)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHhh
Confidence 5555555555543 3456778899999999988899999888888888887765421 22446777776665543
No 16
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.87 E-value=1.4e-17 Score=165.88 Aligned_cols=450 Identities=17% Similarity=0.217 Sum_probs=327.8
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhhc------------------
Q 008533 26 SPSSTADKSQIWQQLQQYSQ-FPD-FNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYK------------------ 84 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~-~~~-~~~~l~~il~~~-~~~~~~~R~~a~~~lk~~i~~~w~------------------ 84 (562)
+.+.+ +.+.|.+.|.-+.+ -++ -+.++.+-|+.+ -+...+.|..+++.||..+.+--+
T Consensus 58 D~ngE-VQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l 136 (1233)
T KOG1824|consen 58 DKNGE-VQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKL 136 (1233)
T ss_pred ccCcH-HHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHH
Confidence 56777 99999999987543 222 233444434332 244667777777777776643211
Q ss_pred -----------------------------cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHH
Q 008533 85 -----------------------------SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQA 135 (562)
Q Consensus 85 -----------------------------~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~ 135 (562)
.+-++....|...++..+.++...||+.++.+++.++...+..-+.+++.+
T Consensus 137 ~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~ 216 (1233)
T KOG1824|consen 137 KQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEH 216 (1233)
T ss_pred HHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 011123333334444445567788999999999999998878888999999
Q ss_pred HHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhh---cCCCHHHHHHHHHHHHHHHhhc
Q 008533 136 LVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF---QSPHTSLRKLSLGSVNQFIMLM 211 (562)
Q Consensus 136 l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l---~~~~~~vr~~al~~l~~~~~~~ 211 (562)
+.+.+.+. ++......+.+|+.++...+..+.+ ..+.++|.+.+.. +..+.++|+..++++..+....
T Consensus 217 Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~--------h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rc 288 (1233)
T KOG1824|consen 217 LLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGS--------HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRC 288 (1233)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHhcchhhc--------ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhC
Confidence 99988764 6677888999999999999988765 4677888888888 5567899999999999999999
Q ss_pred hhhHHhchHHHHHHHhhhcc-C---------------------------------CCHHHHHHHHHHHHHHHhhCccchh
Q 008533 212 PSALFVSMDQYLQGLFLLSN-D---------------------------------PSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 212 ~~~~~~~~~~~l~~l~~~~~-~---------------------------------~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
|..+.++.+.+++.+++.+. | -.+.+|+++.+|+..++....+.+.
T Consensus 289 p~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~ 368 (1233)
T KOG1824|consen 289 PKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLP 368 (1233)
T ss_pred hhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHH
Confidence 98888888877776665311 0 0147999999999999999988888
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccc-------------------hhhHHhhhhHHHHHHHhhcccCh
Q 008533 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP-------------------HENLKEFLPRLVPVLLSNMIYAD 318 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~-------------------~~~~~~~l~~l~~~l~~~l~~~~ 318 (562)
...+.+-|.++..+++.++.|+.-.++....+...-.. ...+....+.++..+-..|. +
T Consensus 369 ~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr--~ 446 (1233)
T KOG1824|consen 369 DFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR--E 446 (1233)
T ss_pred HHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHh--h
Confidence 88888889999999999999988888776665443100 01122222222222222111 0
Q ss_pred hhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHH
Q 008533 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQ 395 (562)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~ 395 (562)
+ .-..|..+...|..+....++ +.++.++|-+.
T Consensus 447 -----------------------------------------k---s~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 447 -----------------------------------------K---SVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred -----------------------------------------c---cccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 0 011344566677777777755 55677888888
Q ss_pred HHHcCCCCCCchhHHHHHHHHH-HHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCC---C
Q 008533 396 AKLSASGDEAWKDREAAVLALG-AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH---Q 471 (562)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~-~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~ 471 (562)
..+.+.++ +...+..++.++. .++...++.+.++++.+.|.+.....|+-+.|-..|+.+.+.+++++.+. ++ -
T Consensus 483 ~~l~DkSs-ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl-~~~~~~ 560 (1233)
T KOG1824|consen 483 YSLNDKSS-SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPL-QPPSSF 560 (1233)
T ss_pred hhcCCccc-hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhccc-CCCccC
Confidence 88876542 2455666665554 45555567889999999999999999999999999999999999998653 22 2
Q ss_pred cchhhHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 472 NGREQFEKVLMGLLKRIL--DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 472 ~~~~~~~~il~~l~~~l~--d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
...+|+.+++...++.|. |.+..||.+|..+++.++...++.+...++.++..+++.+.+.
T Consensus 561 d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE 623 (1233)
T KOG1824|consen 561 DASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE 623 (1233)
T ss_pred CCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch
Confidence 357889999999988875 4579999999999999999999999999999999999988864
No 17
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.85 E-value=1.4e-17 Score=159.14 Aligned_cols=504 Identities=16% Similarity=0.260 Sum_probs=318.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
.+-+-+.+.....+|.. .+++|++.|.+++..|+.|.-.-.||.+ +..++.+..|..+|...|...|+-++.+.|..
T Consensus 13 iallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~--S~~pqskyiALs~LdklIttkWkllp~~~r~G 89 (1053)
T COG5101 13 IALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNN--SKLPQSKYIALSLLDKLITTKWKLLPEGMRQG 89 (1053)
T ss_pred HHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhc--ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHH
Confidence 34455666777789999 9999999999999999999988889987 88999999999999999999999999999999
Q ss_pred HHHHHhhhhh--CCchHHH-------HHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 94 IKSELLPCLG--AADRHIR-------STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 94 i~~~ll~~l~--~~~~~vr-------~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
||+-+++.+- +.+..+| +.+-..+-.|++.++|..||+++|.|++..+ .+..+.+..+.+|..+.++...
T Consensus 90 iRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 90 IRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHHHHhccHHHHHHhHHHHHh
Confidence 9999998763 3455555 4466677888999999999999999998765 5667888888888877776543
Q ss_pred ccccc--------CCCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCH
Q 008533 165 VLDSD--------VPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSA 235 (562)
Q Consensus 165 ~~~~~--------~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 235 (562)
.-... ..+.+.....+++....+.+. +.++.+-++.+..+..++.|+|-.+. +...+++.+...+. ..+
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~-s~p 246 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFN-SMP 246 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhc-cCC
Confidence 21100 000011123344444444443 34678889999999999999883221 01122333322222 235
Q ss_pred HHHHHHHHHHHHHHhhCcc---------chhhh---------------------------------HHHHHHHH------
Q 008533 236 EVRKLVCAAFNLLIEVRPS---------FLEPH---------------------------------LRNLFEYM------ 267 (562)
Q Consensus 236 ~~~~~~~~~L~~l~~~~~~---------~~~~~---------------------------------l~~i~~~~------ 267 (562)
+.|..+++||..++..... .+.-+ +..+..++
T Consensus 247 d~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~ 326 (1053)
T COG5101 247 DTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEV 326 (1053)
T ss_pred chhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHH
Confidence 5666666676666543200 00000 01111110
Q ss_pred ---------------------HhhcCCCChhHHHHHhhhHHHhhcc--------cc------------------ch----
Q 008533 268 ---------------------LQVNKDTDDDVALEACEFWHSYFEA--------QL------------------PH---- 296 (562)
Q Consensus 268 ---------------------~~~~~~~~~~v~~~a~~~l~~~~~~--------~~------------------~~---- 296 (562)
++.-+-.+.++-..|++.|..++.. +. .+
T Consensus 327 ~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn~~~ 406 (1053)
T COG5101 327 YISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPNQDS 406 (1053)
T ss_pred HHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcchhc
Confidence 0000112233344555555543321 00 00
Q ss_pred ------hhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh
Q 008533 297 ------ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC 370 (562)
Q Consensus 297 ------~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~ 370 (562)
......++++--+++..|...++ +-..++|+ .+-+|.+. .|.| .-...+.
T Consensus 407 ~~pLrkhiY~~ilsqLrlvlienMvrPEE-VliVende-------gEivRefv-------------ketD---tI~lYks 462 (1053)
T COG5101 407 TKPLRKHIYIGILSQLRLVLIENMVRPEE-VLIVENDE-------GEIVREFV-------------KETD---TIELYKS 462 (1053)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcce-EEEEECCC-------cHHHHHHh-------------cccc---HhHHHHH
Confidence 00111222222233333332211 00000000 00011000 0111 1234555
Q ss_pred HHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhh-----cCC
Q 008533 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPL-----LDD 444 (562)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~-----l~d 444 (562)
..++|-.+....-.+.-..++.-+...+... .++|..-..-++++|+++-.+.+.. ..++-.++..++.. .+|
T Consensus 463 mRevLvyLthL~v~Dte~~mi~Klarq~dg~-EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKd 541 (1053)
T COG5101 463 MREVLVYLTHLIVDDTEKYMIGKLARQLDGK-EWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKD 541 (1053)
T ss_pred HhhHHHHHhhhhhhhHHHHHHHHHHHHhcCC-ccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 6667777765544444444455555555443 4668999999999999987776544 34555555554443 346
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccc--------ccc
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE--------LAP 516 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~--------~~~ 516 (562)
....|....+.++|++..++.. +..++..++..++..++..+..|+..||..+..++..|+-. -.|
T Consensus 542 nKAVvASnIMyvvGQYpRFLka------hw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEp 615 (1053)
T COG5101 542 NKAVVASNIMYVVGQYPRFLKA------HWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEP 615 (1053)
T ss_pred cchhhecceeeeeccchHHHHH------HHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCc
Confidence 6677888899999999998864 68899999999999999999999999999999999998533 367
Q ss_pred cHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 008533 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 517 ~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (562)
++..++..|-+...+-+....+..++|.|.+++..++.
T Consensus 616 FI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~p~~ 653 (1053)
T COG5101 616 FIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEVPKT 653 (1053)
T ss_pred HHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhccchh
Confidence 88888888777777666666778999999999887754
No 18
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-16 Score=150.72 Aligned_cols=466 Identities=17% Similarity=0.228 Sum_probs=306.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhh---CCchHHH
Q 008533 34 SQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG---AADRHIR 110 (562)
Q Consensus 34 ~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~---~~~~~vr 110 (562)
.+|..+|++|+..+..|..+-+++.. ..+.....+|+..+++.++..+..+++.....+|+.+++.++ +..+.+|
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~--~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~ 79 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ--KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIR 79 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHH
Confidence 46889999999999999999999986 688899999999999999999999999888888887777654 4445999
Q ss_pred HHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCC--------CC---CcchhH
Q 008533 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP--------GL---AECPIN 179 (562)
Q Consensus 111 ~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~--------~~---~~~~~~ 179 (562)
.+++-+++.++-..+ .|.+-++.+++.+++..+. ..++..+.+.+|+...+... .+ +.....
T Consensus 80 tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~-----~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 80 TQLAVAVAALALHMP--EWVNPIFELVRALSNKHPA-----VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred HHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCcc-----HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHH
Confidence 999999999998754 7888777777777666553 33444444555544321100 00 113344
Q ss_pred hhHHHHHHhhcCC---CHHHHHHHHHHHHHHHh--hch-hhHHhchHHHHHHHhhhc-----------------------
Q 008533 180 IFLPRLLQFFQSP---HTSLRKLSLGSVNQFIM--LMP-SALFVSMDQYLQGLFLLS----------------------- 230 (562)
Q Consensus 180 ~il~~l~~~l~~~---~~~vr~~al~~l~~~~~--~~~-~~~~~~~~~~l~~l~~~~----------------------- 230 (562)
.++..+..+++++ ...+-..+++|++++.. ..| +.+... ..++..++..+
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~-~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~ 231 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLAS-FPLITLAFRSLSDDELHEEATECICALLYCSLDR 231 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhh-hHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhh
Confidence 4555555666553 25678899999998876 222 221111 11111111111
Q ss_pred -------------------------cCCCHHHHHHHHHHHHHHHhhCccchh---hhHHHHHHHHHhhcCCCChhHHHHH
Q 008533 231 -------------------------NDPSAEVRKLVCAAFNLLIEVRPSFLE---PHLRNLFEYMLQVNKDTDDDVALEA 282 (562)
Q Consensus 231 -------------------------~~~~~~~~~~~~~~L~~l~~~~~~~~~---~~l~~i~~~~~~~~~~~~~~v~~~a 282 (562)
...|.+-+.++++.+..+.+.+...+. ++.-.++..++-.....+.++...+
T Consensus 232 ~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~S 311 (559)
T KOG2081|consen 232 SEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEAS 311 (559)
T ss_pred hccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhh
Confidence 122344445555555555544322211 1222445555556677777888999
Q ss_pred hhhHHHhhcc------ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCC
Q 008533 283 CEFWHSYFEA------QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (562)
Q Consensus 283 ~~~l~~~~~~------~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (562)
+-+|..+.+. .......+||..+++..+.+..++.+ |... -.|
T Consensus 312 F~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~-~~~~-----------------------------l~E- 360 (559)
T KOG2081|consen 312 FNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPP-DQFD-----------------------------LPE- 360 (559)
T ss_pred HHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCC-cccc-----------------------------Ccc-
Confidence 9999988765 11235568999999999988877654 1110 011
Q ss_pred CCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHH
Q 008533 357 DDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV 435 (562)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~ 435 (562)
+.++....|....+.+..++..+|+ +.+..+...+.+ ..+. |+.-+|++..+..++......=.+.+++++
T Consensus 361 ---e~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~---We~~EAaLF~l~~~~~~~~~~e~~i~pevl 432 (559)
T KOG2081|consen 361 ---EESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNAS---WEEVEAALFILRAVAKNVSPEENTIMPEVL 432 (559)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCc---hHHHHHHHHHHHHHhccCCccccchHHHHH
Confidence 1123456889999999999999987 555555444433 2334 999999999999999876533334444555
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccc
Q 008533 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (562)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~ 515 (562)
..+.+.=. ...+|++++..+|.+++++.. +...++.++..+...+.... ....++.++.+++..|...+.
T Consensus 433 ~~i~nlp~--Q~~~~~ts~ll~g~~~ew~~~------~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~ 502 (559)
T KOG2081|consen 433 KLICNLPE--QAPLRYTSILLLGEYSEWVEQ------HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMT 502 (559)
T ss_pred HHHhCCcc--chhHHHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhh
Confidence 44433322 233999999999999999874 46777888888888877643 888999999999999987777
Q ss_pred ccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcc
Q 008533 516 PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQV 558 (562)
Q Consensus 516 ~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 558 (562)
+.++.+...+..+..-.-.+.-..++..++.++...+.+..++
T Consensus 503 ~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~k~~~ 545 (559)
T KOG2081|consen 503 CLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAHKAKI 545 (559)
T ss_pred hhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHhhhhH
Confidence 6666665544433332222222237888888888777655444
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.83 E-value=5.2e-16 Score=150.97 Aligned_cols=511 Identities=14% Similarity=0.137 Sum_probs=338.6
Q ss_pred CCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-
Q 008533 8 QPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA- 82 (562)
Q Consensus 8 ~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~- 82 (562)
.|..+.-..+..+|-..-+.... .|+.|..+|..=.. -|-|.+.|. ++.+ .+-+++-|+.-...+-+.+-+.
T Consensus 356 ~~~e~kEr~i~~llLkvKNG~pp-mRk~~LR~ltdkar~~ga~~lfnqiLp-llMs-~tLeDqerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 356 EDEEGKERKIMRLLLKVKNGTPP-MRKSALRILTDKARNFGAGPLFNQILP-LLMS-PTLEDQERHLLVKVIDRILYKLD 432 (1172)
T ss_pred CcccccHHHHHHHHHhhcCCCch-hHHHHHHHHHHHHHhhccHHHHHHHHH-HHcC-ccccchhhhhHHHHHHHHHHhhc
Confidence 34445556677777777777888 99999999976332 334555444 4443 3888899998877777666321
Q ss_pred -----hc----------cCChhhHH-----HHHHHHhh---------hh----hCCchHHHHHHHHHHHHHHHhcCcCch
Q 008533 83 -----YK----------SMSPSNQQ-----YIKSELLP---------CL----GAADRHIRSTVGTIVSVVVQLGGIAGW 129 (562)
Q Consensus 83 -----w~----------~l~~~~~~-----~i~~~ll~---------~l----~~~~~~vr~~~~~~i~~i~~~~~~~~w 129 (562)
+- .++++... .|..+|.+ .+ .+.++.||+..+.+++.++... ..
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal---gi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL---GI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh---Cc
Confidence 11 02333221 23333322 12 1358999999999999999865 56
Q ss_pred HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 130 LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 130 ~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
|.++|+|...+.|. +++.|++++.+..+|+...+....+ ++..++..+-.++.|....||..+..++..+.
T Consensus 510 p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlp--------hl~~lv~ii~~gl~De~qkVR~itAlalsala 581 (1172)
T KOG0213|consen 510 PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLP--------HLKPLVKIIEHGLKDEQQKVRTITALALSALA 581 (1172)
T ss_pred HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhh--------hhHHHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 89999999999986 8999999999999999988876554 46778888999999999999999999998888
Q ss_pred hhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhcCCCChhHHHHHhhhHH
Q 008533 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWH 287 (562)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l-~~i~~~~~~~~~~~~~~v~~~a~~~l~ 287 (562)
+...+.-...|+.++..|.+.....-.....+.+++++.++.........|+ .+++-.+..-..++|++.....+.++.
T Consensus 582 eaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 582 EAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 8655444455677777777655433334445566677776665544444444 367777777888999999999999998
Q ss_pred Hhhccccc-hhhHH-hhhhHHHHHHH-hhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccch
Q 008533 288 SYFEAQLP-HENLK-EFLPRLVPVLL-SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (562)
Q Consensus 288 ~~~~~~~~-~~~~~-~~l~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (562)
.+|..... ...++ ..++.++.... +.|...-......-+-.-+ ...+- ...+.....- ++.-|| .
T Consensus 662 qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~-ia~Kv-G~~~~v~R~v----~~lkde----~-- 729 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVE-IAAKV-GSDPIVSRVV----LDLKDE----P-- 729 (1172)
T ss_pred HHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHH-HHHHh-CchHHHHHHh----hhhccc----c--
Confidence 88876322 12222 12222222221 1121100000000000000 00000 0000000000 111001 1
Q ss_pred hcHhhhHHHHHHHHHhhhcc-----chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHh
Q 008533 365 WNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLI 439 (562)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~ 439 (562)
-..|...+++.+.+...+|. .....++.-+.-.++.++ ... ..-+..||.++..+...+.+|+++++..++
T Consensus 730 e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt---t~d-~vml~gfg~V~~~lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 730 EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT---TED-SVMLLGFGTVVNALGGRVKPYLPQICSTIL 805 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc---cch-hhhhhhHHHHHHHHhhccccchHHHHHHHH
Confidence 13688888999998888764 233345555555566554 222 255678889998888888999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchh-hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-ccccccc
Q 008533 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPR 517 (562)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~ 517 (562)
..|+++.+.||..|+..+++++..+... .++ .+..+=..|...|....+.|--....||..++... -..+.|-
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc-----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTC-----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhc-----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999999999999999999987643 222 22222233456777778999888899998888877 5678899
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 518 LEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 518 l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
+..+++.|...|.+..++++.+.++.+|+++..-++
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999998889999999999999986553
No 20
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.6e-15 Score=149.36 Aligned_cols=501 Identities=15% Similarity=0.133 Sum_probs=326.5
Q ss_pred HhhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 008533 11 EQGFNEICRLLEQQISP-SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (562)
Q Consensus 11 ~~~~~~l~~~l~~~~s~-d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~ 89 (562)
+....++.+++..+.++ +.+ ....+++.|++....|..|..-.+++.. ++...+|.++|+.|.-.|.++|..++++
T Consensus 3 ~~~Ia~v~~~v~~lY~~~~~~-~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~--~k~~evqyFGAltL~~ki~~~~e~~~~~ 79 (982)
T KOG2022|consen 3 SDLIATVEELVTTLYSHRNHE-NDAITQKWLQDAQCSQQGWHFSWQLLQP--DKSSEVQYFGALTLHDKINTRWEECPAN 79 (982)
T ss_pred chHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhHHHHHHHHHHcCC--CchhHHHHHhHHHHHHHHHhhhccCChh
Confidence 34678889999999887 556 7888889999999999988888888886 7888889999999999999999999999
Q ss_pred hHHHHHHHHhhhhh--C-CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC-Ch--hHHhHHHHHHHHHhhcch
Q 008533 90 NQQYIKSELLPCLG--A-ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DI--NHMEGAMDALSKICEDIP 163 (562)
Q Consensus 90 ~~~~i~~~ll~~l~--~-~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~-~~--~~~~~al~~l~~i~~~~~ 163 (562)
....++..++..+. + ....|-+..+-.++.+.-+.-++.||.-+..++.+++.. +| .....+..+|..+ ...+
T Consensus 80 ~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~L-s~~p 158 (982)
T KOG2022|consen 80 EAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVL-SFMP 158 (982)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHh-ccCc
Confidence 99999999888663 3 355666777777777777766789999999999988763 23 1111122222222 2333
Q ss_pred hccccc-CC----CC----CcchhHhhHHH---HHHhhcCCCH-----HHHHHHHHHHHHHHhhchh---hHHhchHHHH
Q 008533 164 QVLDSD-VP----GL----AECPINIFLPR---LLQFFQSPHT-----SLRKLSLGSVNQFIMLMPS---ALFVSMDQYL 223 (562)
Q Consensus 164 ~~~~~~-~~----~~----~~~~~~~il~~---l~~~l~~~~~-----~vr~~al~~l~~~~~~~~~---~~~~~~~~~l 223 (562)
.++... .+ +. +.+....+.+. +++...+..+ .++..+++|+..++.++.- .....+..++
T Consensus 159 ~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~ll 238 (982)
T KOG2022|consen 159 AEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVLL 238 (982)
T ss_pred HhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 322110 00 00 00122223332 3332222222 4678899999988874320 0000000000
Q ss_pred HHHh---------------------------------------------------------------hhccCCC--HHHH
Q 008533 224 QGLF---------------------------------------------------------------LLSNDPS--AEVR 238 (562)
Q Consensus 224 ~~l~---------------------------------------------------------------~~~~~~~--~~~~ 238 (562)
..+. ....+.| ++.-
T Consensus 239 ~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~i 318 (982)
T KOG2022|consen 239 DVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEEI 318 (982)
T ss_pred HHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 0000 0001111 1222
Q ss_pred HHHHHHHHHHHhhCccch---------hhhHHHHHHHHHhhcCC-----CChhHHHHHhhhHHHhhcc---------ccc
Q 008533 239 KLVCAAFNLLIEVRPSFL---------EPHLRNLFEYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLP 295 (562)
Q Consensus 239 ~~~~~~L~~l~~~~~~~~---------~~~l~~i~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~---------~~~ 295 (562)
...+.+.+..+++.-..+ ..+...+++.++.+..- .++.+...+++||.++... +..
T Consensus 319 ~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~ 398 (982)
T KOG2022|consen 319 VTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIK 398 (982)
T ss_pred HHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 222222222222221111 11222333434433322 2355667888999987543 111
Q ss_pred h-hhHHhhhhHHHHHHHhhcccChhh-HhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHH
Q 008533 296 H-ENLKEFLPRLVPVLLSNMIYADDD-ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (562)
Q Consensus 296 ~-~~~~~~l~~l~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~ 373 (562)
. ...++...+++..+++.+....++ ...|++++ .+.+-..|+...+
T Consensus 399 ~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s--------------------------------~e~F~~YR~diSD 446 (982)
T KOG2022|consen 399 KQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDS--------------------------------REQFESYRKDISD 446 (982)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcch--------------------------------HHHHHHHHHHHHH
Confidence 2 223378888999998887765432 22232111 1123357888889
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHcCCC--CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhh-cCCCChhHH
Q 008533 374 ALDVLSNVFGDEILPTLMPVIQAKLSASG--DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL-LDDKFPLIR 450 (562)
Q Consensus 374 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~-l~d~~~~vr 450 (562)
++...-..+|+.++..+...+.+.+.+.+ ..+|.+-++.+..+..+++..++...+.++.++...... +.-.+|...
T Consensus 447 ~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~ 526 (982)
T KOG2022|consen 447 LLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL 526 (982)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH
Confidence 99999999999888899999999888643 345999999999999999988766566655555543332 123478889
Q ss_pred HHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHh
Q 008533 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~ 530 (562)
..+...+|.++.++.+ +.-|+...++.+++.|+. +..-..+...+..+|+.|++.+.||.++++..+-..+.
T Consensus 527 ~Tss~~igs~s~~l~e------~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 527 STSSDLIGSLSNWLGE------HPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred HHHHHHHHHHHHHHhc------CCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 9999999999999985 467888999999999974 44555678889999999999999999999999999888
Q ss_pred hhh--hhHHHHHHHHHHHHHHHHhhhh
Q 008533 531 KYQ--RRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 531 ~~~--~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
... +..+..++.+||.+.++...+.
T Consensus 599 ~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 599 KSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred ccccCchHHHHHHHHHHHHHHhccHHh
Confidence 743 3445689999999998887553
No 21
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.81 E-value=4.2e-15 Score=140.88 Aligned_cols=490 Identities=11% Similarity=0.060 Sum_probs=327.0
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhh----c-CCChHH-HHHHHHhhc-cCCCHHHHHHHHHHHHHHHH---------Hhhcc
Q 008533 22 EQQISPSSTADKSQIWQQLQQYS----Q-FPDFNN-YLAFILARA-EGKSVEIRQAAGLLLKNNLR---------TAYKS 85 (562)
Q Consensus 22 ~~~~s~d~~~~r~~A~~~L~~~~----~-~~~~~~-~l~~il~~~-~~~~~~~R~~a~~~lk~~i~---------~~w~~ 85 (562)
+.++++|.+ +..+|...|.++- + .|.++. .|..+.... .++++++...|...-..... +..+.
T Consensus 228 eatq~~d~e-~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 228 EATQGNDEE-LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred hhccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 345678888 9999999998832 2 333332 333333321 36677777766543322221 11111
Q ss_pred CCh-------hhHHHHHHHHhhhhhC-------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHH
Q 008533 86 MSP-------SNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGA 151 (562)
Q Consensus 86 l~~-------~~~~~i~~~ll~~l~~-------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~a 151 (562)
.+. .....+.+.|+++|.. .++.+...++.|+...++..+..-...++.++.+.++++++..|++|
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaa 386 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAA 386 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHH
Confidence 111 1133466777887742 36778889999999888876666667789999999999999999999
Q ss_pred HHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHh--chHHHHHHHhhh
Q 008533 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLL 229 (562)
Q Consensus 152 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~ 229 (562)
..+++.+.+....... .+++++.+|.+...+.|+...|+..+.+|++.+....+..+.+ ++.......+..
T Consensus 387 vmAfGSvm~gp~~~~l-------T~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG 459 (858)
T COG5215 387 VMAFGSVMHGPCEDCL-------TKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459 (858)
T ss_pred HHHhhhhhcCccHHHH-------HhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence 9999999887554332 2578899999999999998899999999999999887765554 344445554444
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhC-------ccchhhhHHHHHHHHHhhc--CCCChhHHHHHhhhHHHhhccccchhhHH
Q 008533 230 SNDPSAEVRKLVCAAFNLLIEVR-------PSFLEPHLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENLK 300 (562)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~l~~~~-------~~~~~~~l~~i~~~~~~~~--~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 300 (562)
+.| .+.+...+++....++.+. +.++.++...++..++... .+++...|..+++.++++... ....+.
T Consensus 460 l~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~--~~d~V~ 536 (858)
T COG5215 460 LMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI--CPDAVS 536 (858)
T ss_pred hhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh--cchhHH
Confidence 432 4555556666665555543 4455666667777776653 355666788888988888765 333344
Q ss_pred hhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHh
Q 008533 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (562)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (562)
+.+..+.......+- +-+...+ +.. +-+|....-.+...-...|..+..
T Consensus 537 ~~~a~~~~~~~~kl~---~~isv~~--------------------------q~l--~~eD~~~~~elqSN~~~vl~aiir 585 (858)
T COG5215 537 DILAGFYDYTSKKLD---ECISVLG--------------------------QIL--ATEDQLLVEELQSNYIGVLEAIIR 585 (858)
T ss_pred HHHHHHHHHHHHHHH---HHHHHhh--------------------------hhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333333222211 0011000 000 000000000133334455666666
Q ss_pred hhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 008533 381 VFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (562)
Q Consensus 381 ~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l 457 (562)
..+. .+-.+++..+.+.+++.+. ...-.-.+.++++++..+.+.+..|++.++|++.+.++..+..|...|+-.+
T Consensus 586 ~~~~~ie~v~D~lm~Lf~r~les~~~--t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv 663 (858)
T COG5215 586 TRRRDIEDVEDQLMELFIRILESTKP--TTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV 663 (858)
T ss_pred hcCCCcccHHHHHHHHHHHHHhccCC--chhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH
Confidence 6655 3445689999999987651 3444556788899999999999999999999999999988999999999999
Q ss_pred HHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhh--
Q 008533 458 SRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ-- 533 (562)
Q Consensus 458 ~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~-- 533 (562)
|.++..+... ...|.+.++..|.++|+++ +-.++....++++.+.-+.+..|.+|++.+|--+...-+...
T Consensus 664 gdlantl~~d-----f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~ 738 (858)
T COG5215 664 GDLANTLGTD-----FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHS 738 (858)
T ss_pred HHHHHHhhhh-----HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Confidence 9999998764 5789999999999999986 457888999999999999999999999999876665544321
Q ss_pred ---------hhHHHHHHHHHHHHHHHHh--hhhhcccc
Q 008533 534 ---------RRNLRIVYDAIGTLADAVG--FELNQVLL 560 (562)
Q Consensus 534 ---------~~~~~~~~~~l~~l~~~~~--~~~~~~~~ 560 (562)
...+..+.++.-.+..... .+...||.
T Consensus 739 ~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv 776 (858)
T COG5215 739 DEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYV 776 (858)
T ss_pred CceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHH
Confidence 1223345555555555554 44566764
No 22
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.78 E-value=1.9e-17 Score=158.13 Aligned_cols=276 Identities=19% Similarity=0.301 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHh-hchhhHHhchHHHHHHHhhhc-------c--CCC-----HHHHHHHHHHHHHHHhhCccchhhhHH
Q 008533 197 RKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLS-------N--DPS-----AEVRKLVCAAFNLLIEVRPSFLEPHLR 261 (562)
Q Consensus 197 r~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~-------~--~~~-----~~~~~~~~~~L~~l~~~~~~~~~~~l~ 261 (562)
....+|++.++.. .+|+.+.+++..||..+...+ . +++ +.++..+|+.+...++.+.+.+.+|++
T Consensus 57 l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~ 136 (370)
T PF08506_consen 57 LKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLP 136 (370)
T ss_dssp HHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777654 578888888888887655432 1 111 468888999999999999999999999
Q ss_pred HHHHHHHhhcC-----CCChhHHHHHhhhHHHhhccccchhh--HHhhhhHHHHHH-HhhcccChhhHhhhhhhhccCCC
Q 008533 262 NLFEYMLQVNK-----DTDDDVALEACEFWHSYFEAQLPHEN--LKEFLPRLVPVL-LSNMIYADDDESLVEAEEDESLP 333 (562)
Q Consensus 262 ~i~~~~~~~~~-----~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~l~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~ 333 (562)
.++..+++.+. ...+.+...+++|+.++++....... .++++..++..+ ++.|+.+++|++.|++||.|
T Consensus 137 ~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~E--- 213 (370)
T PF08506_consen 137 TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEE--- 213 (370)
T ss_dssp HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHH---
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHH---
Confidence 99888877542 23466788899999998876322212 267889998865 79999999999999999887
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc---CCCCCCchhHH
Q 008533 334 DRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS---ASGDEAWKDRE 410 (562)
Q Consensus 334 ~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~---~~~~~~~~~r~ 410 (562)
|||..+ |.. +..+.|++|.+.+..++..+++.+.+.+..++++.++ ++.+.+|+.+.
T Consensus 214 ----YIrrd~-----------e~s-----d~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD 273 (370)
T PF08506_consen 214 ----YIRRDL-----------EGS-----DSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKD 273 (370)
T ss_dssp ----HHHHHS-----------CSS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHH
T ss_pred ----HHHhhc-----------ccc-----ccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHH
Confidence 776322 111 1237999999999999999988888888888877776 12234599999
Q ss_pred HHHHHHHHHhhcch---hhhh------hhHHHHHHHHhhhcC---CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH
Q 008533 411 AAVLALGAIAEGCI---KGLY------PHLSEIVAFLIPLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (562)
Q Consensus 411 aal~~l~~i~~~~~---~~~~------~~l~~~~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (562)
+|+..+++++.... .++. +..+-+...+.+.|. +.+|.+|..|++.+..+-..++ .+.+.
T Consensus 274 ~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~--------~~~l~ 345 (370)
T PF08506_consen 274 GALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP--------KEQLL 345 (370)
T ss_dssp HHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS---------HHHHH
T ss_pred HHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC--------HHHHH
Confidence 99999999997552 1111 111112223444444 5789999999999888877653 67899
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 008533 479 KVLMGLLKRILDTNKRVQEAACSAF 503 (562)
Q Consensus 479 ~il~~l~~~l~d~~~~vr~~a~~al 503 (562)
.+++.++.+|++++..|+..|+.|+
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 9999999999999999999999875
No 23
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=4.1e-14 Score=137.08 Aligned_cols=411 Identities=15% Similarity=0.176 Sum_probs=282.9
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hh-----cCCC---hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Q 008533 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQ-YS-----QFPD---FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA 82 (562)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~-~~-----~~~~---~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~ 82 (562)
|....+.+.+++.++.+.....+++.-.+.. ++ .+|. ++..++..+. +..+.+|+..+..+.......
T Consensus 51 ~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~---tps~~~q~~~~~~l~~~~~~~ 127 (569)
T KOG1242|consen 51 QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELD---TPSKSVQRAVSTCLPPLVVLS 127 (569)
T ss_pred HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcC---CCcHHHHHHHHHHhhhHHHHh
Confidence 3445666777776665332133444444433 22 1443 3344444443 678889988888777765442
Q ss_pred hccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc---CchHHHHHHHHHHhccCC-hhHHhHHHHHHHHH
Q 008533 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSND-INHMEGAMDALSKI 158 (562)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~---~~w~~ll~~l~~~l~~~~-~~~~~~al~~l~~i 158 (562)
.......+...+.+.+..+...-|..++..++.++...+- ..| .++..+...+++.. ...|++++.+....
T Consensus 128 ----~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~-~~l~~l~~ai~dk~~~~~re~~~~a~~~~ 202 (569)
T KOG1242|consen 128 ----KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEF-GFLDNLSKAIIDKKSALNREAALLAFEAA 202 (569)
T ss_pred ----hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhh-hHHHHHHHHhcccchhhcHHHHHHHHHHH
Confidence 2233455666777888888888899999999999876532 233 46777888887764 45566888888888
Q ss_pred hhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhh-HHhchHHHHHHHhhhccCCCHHH
Q 008533 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEV 237 (562)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~ 237 (562)
+..++..+. +++-.++|.++..+.|....||.+|..+...+....+.. ....++..+..+... .+..
T Consensus 203 ~~~Lg~~~E--------Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~----kWrt 270 (569)
T KOG1242|consen 203 QGNLGPPFE--------PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA----KWRT 270 (569)
T ss_pred HHhcCCCCC--------chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH----hhhh
Confidence 888876543 567889999999999999999999999988887755432 222333344444332 5677
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccC
Q 008533 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (562)
+..+++.++.++...+..+.-.+++++|.+.+.++|..+++|..+.+++..+++... . +-+..++|.++.++...
T Consensus 271 K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid-N----~dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 271 KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID-N----PDIQKIIPTLLDALADP 345 (569)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc-c----HHHHHHHHHHHHHhcCc
Confidence 889999999999999999999999999999999999999999999999999887621 1 12455666666555422
Q ss_pred hhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh-----hccchhhhhHH
Q 008533 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-----FGDEILPTLMP 392 (562)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~-----~~~~~~~~l~~ 392 (562)
.. ...++++.++.. +....+..++|
T Consensus 346 ~~--------------------------------------------------~~~e~~~~L~~ttFV~~V~~psLalmvp 375 (569)
T KOG1242|consen 346 SC--------------------------------------------------YTPECLDSLGATTFVAEVDAPSLALMVP 375 (569)
T ss_pred cc--------------------------------------------------chHHHHHhhcceeeeeeecchhHHHHHH
Confidence 10 012344444332 23355678889
Q ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHHhhcc--hhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCC
Q 008533 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (562)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~--~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (562)
.+.+.+...+ ...+..+...++.++.-. +..+.+|++.++|.+-..+.|+.|.||..+..++|.+.+..+.
T Consensus 376 iL~R~l~eRs---t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~---- 448 (569)
T KOG1242|consen 376 ILKRGLAERS---TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE---- 448 (569)
T ss_pred HHHHHHhhcc---chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh----
Confidence 9999888766 556677777788877655 5677899999999999999999999999999999999998763
Q ss_pred CcchhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Q 008533 471 QNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEE 508 (562)
Q Consensus 471 ~~~~~~~~~il~~l~~~l~d~~-~~vr~~a~~al~~l~~ 508 (562)
.+++..++.+...+.+.. ..-+..++..+..++.
T Consensus 449 ----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 449 ----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred ----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 233555555555554432 2224444444444443
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=5.8e-14 Score=133.24 Aligned_cols=409 Identities=15% Similarity=0.178 Sum_probs=290.5
Q ss_pred HHHHHHHHHHHhhc----CCC--hHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhh
Q 008533 32 DKSQIWQQLQQYSQ----FPD--FNNYLAFILARA--EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG 103 (562)
Q Consensus 32 ~r~~A~~~L~~~~~----~~~--~~~~l~~il~~~--~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~ 103 (562)
.|++|...++++-+ +.+ -+.-++..+... .+.+.+-|.-+.+-+-..... ...=+....+.+...++.++.
T Consensus 16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~ia-Lg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIA-LGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHH-hccccHHHHHHhhHHHHHhcc
Confidence 78888888877432 222 233344433321 133444454232222222111 111112245667777888999
Q ss_pred CCchHHHHHHHHHHHHHHHhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHh
Q 008533 104 AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINI 180 (562)
Q Consensus 104 ~~~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (562)
+++..||--+|+.+..|++.. ....+++++..+.+...+++..++. +...+..+.++....-.+. ..+..
T Consensus 95 D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~t------FsL~~ 167 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESAST------FSLPE 167 (675)
T ss_pred CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccc------cCHHH
Confidence 999999999999999988874 3467899999999998888866654 4577877777766532221 25788
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh---hCccchh
Q 008533 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE---VRPSFLE 257 (562)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~---~~~~~~~ 257 (562)
++|.+-.-+...++.+|...++.+..+-...+-.+..+++.+++.+++.++|+.+++|..+=.++..+.. ..|..+
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~- 246 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM- 246 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-
Confidence 9999988888899999999988888766554456778889999999999999999999877776666533 334432
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
..+++++.+..-..++++.++..|+..+..++.. ....+.++++.++..+++++..+++-
T Consensus 247 -d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~~~s~il~~iLpc~s~~e~~----------------- 306 (675)
T KOG0212|consen 247 -DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLLYLSGILTAILPCLSDTEEM----------------- 306 (675)
T ss_pred -CcccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhhhhhhhhhhcccCCCCCccc-----------------
Confidence 3457788888888999999999999888888876 45667788888888888887654321
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHH----HHHHHHhhhcc-c-hhhhhHHHHHHHHcCCCCCCchhHHH
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA----ALDVLSNVFGD-E-ILPTLMPVIQAKLSASGDEAWKDREA 411 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~----~l~~l~~~~~~-~-~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (562)
+.+..+.. .+...+...++ + -+..+++.+.+++.++. -..|.+
T Consensus 307 ----------------------------~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~---~~tri~ 355 (675)
T KOG0212|consen 307 ----------------------------SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR---EETRIA 355 (675)
T ss_pred ----------------------------cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch---HHHHHH
Confidence 12222222 22222222222 1 23588899999999887 899999
Q ss_pred HHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC
Q 008533 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (562)
Q Consensus 412 al~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (562)
++..+.-+-...+..+..+.+++.+.++..|.|++..|...++.+++.++..-. .+++.+.+..++.++..+
T Consensus 356 ~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~--------~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 356 VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN--------SPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc--------cccHHHHHHHHHHHHhhh
Confidence 999999999999888889999999999999999999999999999999998532 335566677777777766
Q ss_pred CHHHHHHHHHHHHHHHH
Q 008533 492 NKRVQEAACSAFATLEE 508 (562)
Q Consensus 492 ~~~vr~~a~~al~~l~~ 508 (562)
..-++.++.-.+..+|-
T Consensus 428 ~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hHHHHhhhhHHHHHHHH
Confidence 67777777777777764
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.71 E-value=4.3e-13 Score=131.04 Aligned_cols=411 Identities=12% Similarity=0.135 Sum_probs=289.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----CCChH--HHHHHHHhhccCCCHHHHHHHHH--------HHHHHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDFN--NYLAFILARAEGKSVEIRQAAGL--------LLKNNLR 80 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~~~~~--~~l~~il~~~~~~~~~~R~~a~~--------~lk~~i~ 80 (562)
+-+.-+.....|||.+ -++-..+.+++... .|.|+ ..+-.++.+ ...|.+|+- -....+.
T Consensus 636 evmlil~rEf~sPDee-mkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~-----fw~rrmA~drr~ykqlv~ttv~ia 709 (1172)
T KOG0213|consen 636 EVMLILIREFGSPDEE-MKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFS-----FWGRRMALDRRNYKQLVDTTVEIA 709 (1172)
T ss_pred HHHHHHHHhhCCChHH-HHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhh-----hhhhhhhccccchhhHHHHHHHHH
Confidence 3466777788899999 88888888888654 34443 234444443 444555540 0111111
Q ss_pred HhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC----ch-HHHHHHHHHHhccCChhHHhHHHHHH
Q 008533 81 TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GW-LELLQALVTCLDSNDINHMEGAMDAL 155 (562)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~----~w-~~ll~~l~~~l~~~~~~~~~~al~~l 155 (562)
+. +.. ..+...++.-+.++++.-|++.+..+..|+...+.. .. ..++..++..++..+... ...+..+
T Consensus 710 ~K---vG~---~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d-~vml~gf 782 (1172)
T KOG0213|consen 710 AK---VGS---DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTED-SVMLLGF 782 (1172)
T ss_pred HH---hCc---hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhH
Confidence 11 111 134456666778889999999999999998775432 22 346677777776543222 1356778
Q ss_pred HHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH-hchHHHHHHHhhhccCCC
Q 008533 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSNDPS 234 (562)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~ 234 (562)
+.++..++.... +++.+++..++..|++..+.||..|.+.++.++..+...-. ..+..+=..|...++...
T Consensus 783 g~V~~~lg~r~k--------pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeey 854 (1172)
T KOG0213|consen 783 GTVVNALGGRVK--------PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEY 854 (1172)
T ss_pred HHHHHHHhhccc--------cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCccc
Confidence 888888776554 46788999999999999999999999999988765532211 112222234566678888
Q ss_pred HHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh
Q 008533 235 AEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 235 ~~~~~~~~~~L~~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
+++.-.++.++..+++..+ ..+.+=+.+++|-+.-.+++.++.|...++.+++.+|......-..++.+.-.+..+ ..
T Consensus 855 pEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl-el 933 (1172)
T KOG0213|consen 855 PEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL-EL 933 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HH
Confidence 9999888888888887653 234455677888888888899999999999999999987221112233333222211 11
Q ss_pred cccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHH
Q 008533 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (562)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (562)
+.. ....+|++|.++++.++..+|.. .++..
T Consensus 934 Lka----------------------------------------------hkK~iRRaa~nTfG~IakaIGPq---dVLat 964 (1172)
T KOG0213|consen 934 LKA----------------------------------------------HKKEIRRAAVNTFGYIAKAIGPQ---DVLAT 964 (1172)
T ss_pred HHH----------------------------------------------HHHHHHHHHHhhhhHHHHhcCHH---HHHHH
Confidence 110 01258999999999999999873 55566
Q ss_pred HHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcc
Q 008533 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (562)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (562)
+.+.++.++ -+.|.+.-.+++-+++.|+.. .++|.+++...-++..|+...+.+++-+.+++.+. .
T Consensus 965 LlnnLkvqe---Rq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrtPe~nVQnGVLkalsf~Feyigem-----s 1030 (1172)
T KOG0213|consen 965 LLNNLKVQE---RQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM-----S 1030 (1172)
T ss_pred HHhcchHHH---HHhchhhhhhhhhhhhhcCch------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH-----h
Confidence 666777777 788888888999999888632 27888888888899999999999999999998864 6
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
.+|+..+.+.+...|.|.+...|..|+.++.++.-.+
T Consensus 1031 kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1031 KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999887654
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=5.4e-15 Score=142.41 Aligned_cols=359 Identities=16% Similarity=0.140 Sum_probs=256.4
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCc-----CchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccC
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDV 170 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-----~~w~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 170 (562)
..+..+.+.+...+..+...+-.+...+.. ..+..++|.+++++. +.++..+..|.++|..|+..-.....-
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~-- 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV-- 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc--
Confidence 344445555555566677777777666521 234567899999997 556899999999999999876654221
Q ss_pred CCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch--HHHHHHHhhhccCCCH-HHHHHHHHHHHH
Q 008533 171 PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSA-EVRKLVCAAFNL 247 (562)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~-~~~~~~~~~L~~ 247 (562)
..-...+|.|.+++.+++..|+..|++++++++...|. +.+.+ ..++..++.++...+. ...+.+.++|..
T Consensus 148 -----vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 -----VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN 221 (514)
T ss_pred -----cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH
Confidence 12255789999999999999999999999999876542 33222 1345666666554443 677889999999
Q ss_pred HHhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhh
Q 008533 248 LIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (562)
Q Consensus 248 l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~ 326 (562)
++... |.--...+..++|.+...+.+.|++|..-|...+..++... .+
T Consensus 222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~--ne----------------------------- 270 (514)
T KOG0166|consen 222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS--NE----------------------------- 270 (514)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC--hH-----------------------------
Confidence 99876 33222456678888888899999998888887777776531 00
Q ss_pred hhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCc
Q 008533 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAW 406 (562)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 406 (562)
.++.+. -..+.|.+..++.+++ .
T Consensus 271 -----------------------------------------------~iq~vi-------~~gvv~~LV~lL~~~~---~ 293 (514)
T KOG0166|consen 271 -----------------------------------------------KIQMVI-------DAGVVPRLVDLLGHSS---P 293 (514)
T ss_pred -----------------------------------------------HHHHHH-------HccchHHHHHHHcCCC---c
Confidence 011110 1245677788888887 8
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
.++..|+.++|.|+.|........+ ...+|.+...+. .+...+|..|||+++++...-++. ...-.-..+++.|
T Consensus 294 ~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~q----iqaVida~l~p~L 369 (514)
T KOG0166|consen 294 KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQ----IQAVIDANLIPVL 369 (514)
T ss_pred ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHH----HHHHHHcccHHHH
Confidence 8999999999999988765433333 236788888887 556679999999999999864432 2233345889999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
+..|+....++|..|+|+|++++..+...-..|+ ..+++.+.++|.-.+.+....+++++..+....+...
T Consensus 370 i~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 370 INLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred HHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988899999999999999987754333443 4578888888877777777789999998887665443
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=5.6e-13 Score=138.52 Aligned_cols=436 Identities=17% Similarity=0.171 Sum_probs=280.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHH-HHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHH
Q 008533 19 RLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAF-ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS 96 (562)
Q Consensus 19 ~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~-il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~ 96 (562)
+++..+.+.|.. .|+-+.-++..+.. +|+....... +..+..+.++.+|-.|...+-+.. +++..+.+.+
T Consensus 46 ~vi~l~~s~~~~-~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~ 117 (526)
T PF01602_consen 46 EVIKLISSKDLE-LKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIP 117 (526)
T ss_dssp HHHCTCSSSSHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHH
T ss_pred HHHHHhCCCCHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHH
Confidence 334444467777 88888888888664 5663332333 333334678888888887777652 5677777888
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHH-HHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE-LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~-ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
.+.+.+.++++.||+.|+.++..+.+.++ +..+. +++.+.+.+.++++.++.+|+.++..+ +.-+....
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-------- 187 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-------- 187 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT--------
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh--------
Confidence 88899999999999999999999999863 34344 789999999999999999999999988 22221110
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH----------------------------------HhchHH
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL----------------------------------FVSMDQ 221 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~----------------------------------~~~~~~ 221 (562)
..+..++..+.+.+...++-++..+++++..+....+... ...+..
T Consensus 188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~ 267 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQK 267 (526)
T ss_dssp THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHH
T ss_pred hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHh
Confidence 1334445555555555666555555555554433211110 001223
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHh
Q 008533 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (562)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 301 (562)
+++.+..++.++++++|..+++.|..++...+..+. +....+ .....+.+..+|..+++.+..++.. +.+..
T Consensus 268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~---~~l~~~~d~~Ir~~~l~lL~~l~~~----~n~~~ 339 (526)
T PF01602_consen 268 AINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLIL---FFLLYDDDPSIRKKALDLLYKLANE----SNVKE 339 (526)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHH---HHHHCSSSHHHHHHHHHHHHHH--H----HHHHH
T ss_pred hHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhh---heecCCCChhHHHHHHHHHhhcccc----cchhh
Confidence 445555666677777888888888887777644333 111111 1223466778888888888888764 22322
Q ss_pred hhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh
Q 008533 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (562)
Q Consensus 302 ~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~ 381 (562)
+++.+...+.... ...++..+...+..++..
T Consensus 340 ----Il~eL~~~l~~~~---------------------------------------------d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 340 ----ILDELLKYLSELS---------------------------------------------DPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp ----HHHHHHHHHHHC-----------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcc---------------------------------------------chhhhhhHHHHHHHHHhc
Confidence 3333333321100 013677788899999888
Q ss_pred hccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHHh
Q 008533 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRF 460 (562)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l 460 (562)
++.. ....++.+.+.+...+ ......++..+..+....++.. ..++..+...+.+ .++.++..++|++|++
T Consensus 371 ~~~~-~~~~v~~l~~ll~~~~---~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy 442 (526)
T PF01602_consen 371 FPPD-AEWYVDTLLKLLEISG---DYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEY 442 (526)
T ss_dssp HGSS-HHHHHHHHHHHHHCTG---GGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHH
T ss_pred cCch-HHHHHHHHHHhhhhcc---ccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhccc
Confidence 7542 3466677778887665 6778888888888776544322 2245555555554 6788999999999999
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc-cccccHHHHHHHHHHHHh--hhhhhHH
Q 008533 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-ELAPRLEIILQHLMMAFG--KYQRRNL 537 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-~~~~~l~~il~~L~~~l~--~~~~~~~ 537 (562)
+..... .. ....++..+...+.+.++.||..+..++..+....+. ... +.+++.+..... +.+.+++
T Consensus 443 ~~~~~~------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~~i~~~~~~~~~~~s~~~evr 512 (526)
T PF01602_consen 443 GELIEN------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ---NEILQFLLSLATEDSSDPEVR 512 (526)
T ss_dssp CHHHTT------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---HHHHHHHHCHHHHS-SSHHHH
T ss_pred CCcccc------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH---HHHHHHHHHHhccCCCCHHHH
Confidence 998742 12 6778888888888877889999999999999877642 232 356666666666 4455666
Q ss_pred HHHHHHHHHH
Q 008533 538 RIVYDAIGTL 547 (562)
Q Consensus 538 ~~~~~~l~~l 547 (562)
..+.+.+.-+
T Consensus 513 ~Ra~~y~~ll 522 (526)
T PF01602_consen 513 DRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777766554
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.9e-13 Score=132.56 Aligned_cols=384 Identities=17% Similarity=0.163 Sum_probs=278.0
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHH
Q 008533 54 AFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELL 133 (562)
Q Consensus 54 ~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll 133 (562)
-+-|.+ ..+...|..-.++....-.+-|. .++- -..+-+.++..+.-+.+.+|+..+.|+..+........-..++
T Consensus 61 ~~~l~~--~~~~~~~~~~~v~~~~~a~~~~~-~d~~-~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l 136 (569)
T KOG1242|consen 61 EQRLNS--LHNDNLRNNVVVLEGTLAFHLQI-VDPR-PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVL 136 (569)
T ss_pred HHHhcc--chhHHHhhhhHHHHHHHHHhccc-cCcc-hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHH
Confidence 334444 44777776554443333334443 2322 2334556777778889999999999999998775444556677
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhch
Q 008533 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 134 ~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~ 212 (562)
+.+.++++.++...|.++...+..+....+...... ..++..+....++... ..|..++-++..+...+.
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~---------~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg 207 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE---------FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG 207 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh---------hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC
Confidence 788888887777888888888888888776643221 4567778888887544 445567777777777777
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
..+.+.+..+++.++.-.++..+.+|.++..+...+....+.. -.+.+++.++..+.+........+++.++.++..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~---aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY---AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc---hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 6777788888999998888889999999999888887765432 1233344333333222445567888888888776
Q ss_pred ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHH
Q 008533 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (562)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~ 372 (562)
....+...++.++|.+...|..+ .-.+|+++.
T Consensus 285 --ap~qLs~~lp~iiP~lsevl~DT----------------------------------------------~~evr~a~~ 316 (569)
T KOG1242|consen 285 --APKQLSLCLPDLIPVLSEVLWDT----------------------------------------------KPEVRKAGI 316 (569)
T ss_pred --chHHHHHHHhHhhHHHHHHHccC----------------------------------------------CHHHHHHHH
Confidence 45566677888888886655421 124799999
Q ss_pred HHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHH--hhcchhhhhhhHHHHHHHHhhhcCCCChhHH
Q 008533 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI--AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIR 450 (562)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i--~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr 450 (562)
+++..++....+.-+..+.|.+.+++.++. -++ ..++..|++- +.... .+-+.-++|.+...+.+.+...+
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~---~~~-~e~~~~L~~ttFV~~V~---~psLalmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPS---CYT-PECLDSLGATTFVAEVD---APSLALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcc---cch-HHHHHhhcceeeeeeec---chhHHHHHHHHHHHHhhccchhh
Confidence 999999999987667788999999999885 333 4445555432 22211 36677789999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
..++..+++++.... +|....+|++.+++.+-..+.|+.|.||.-+..+|+.+.+..+
T Consensus 390 r~t~~IidNm~~Lve---Dp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVE---DPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred hhHHHHHHHHHHhhc---CHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999874 2345789999999999999999999999999999999998874
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.69 E-value=2.8e-12 Score=132.80 Aligned_cols=423 Identities=14% Similarity=0.094 Sum_probs=243.2
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhc-CCChH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhh
Q 008533 23 QQISPSSTADKSQIWQQLQQYSQ-FPDFN-NYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (562)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~-~~~~~-~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~ 100 (562)
.+.++|.+ +||-..-+|..+.. +|+.. ..+-.+..+..+.++.+|-+|...+-+. -.++..+.+-..+.+
T Consensus 76 ~~~S~d~e-lKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~I-------r~~~i~e~l~~~lkk 147 (746)
T PTZ00429 76 LAPSTDLE-LKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCI-------RVSSVLEYTLEPLRR 147 (746)
T ss_pred HhCCCCHH-HHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHH
Confidence 33455555 66666666666543 55532 2222222222345666666665444332 223445556666677
Q ss_pred hhhCCchHHHHHHHHHHHHHHHhcCcC-chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH
Q 008533 101 CLGAADRHIRSTVGTIVSVVVQLGGIA-GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (562)
Q Consensus 101 ~l~~~~~~vr~~~~~~i~~i~~~~~~~-~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~ 179 (562)
++.+.++.||+.++-++.++...++.- .-.++++.|.+++.++++.+..+|+.+|..+.+..+..+. ...
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~---------l~~ 218 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE---------SSN 218 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH---------HHH
Confidence 778888888888888888888765421 1123556677778888888888888888888765443221 234
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC-ccchhh
Q 008533 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-PSFLEP 258 (562)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~ 258 (562)
..+..++..+.+-++-.+...++++.. +.|+. ......+++.+...+++.++.+.-.+++++..+.... ++.+..
T Consensus 219 ~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~ 294 (746)
T PTZ00429 219 EWVNRLVYHLPECNEWGQLYILELLAA---QRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER 294 (746)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 445556666666566666666666643 33321 1123456777777777778888888888888776443 233333
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHH--------------HHHHhhcccChhhHhhh
Q 008533 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV--------------PVLLSNMIYADDDESLV 324 (562)
Q Consensus 259 ~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~--------------~~l~~~l~~~~~~~~~~ 324 (562)
.+..+...++.. ...+++++..++..+..++.. ....+.+++...+ ..++ .+. +++.++..
T Consensus 295 ~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~--~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~-~La-ne~Nv~~I 369 (746)
T PTZ00429 295 CTVRVNTALLTL-SRRDAETQYIVCKNIHALLVI--FPNLLRTNLDSFYVRYSDPPFVKLEKLRLLL-KLV-TPSVAPEI 369 (746)
T ss_pred HHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHH--CHHHHHHHHHhhhcccCCcHHHHHHHHHHHH-HHc-CcccHHHH
Confidence 333333333333 345667888888777666554 2223332221110 1111 111 11111100
Q ss_pred hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCC
Q 008533 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (562)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (562)
-.+= .+|+. + .| -.+++.+..+++.++..++. ....++..+.+.+.+..
T Consensus 370 L~EL-------~eYa~-----------d----~D------~ef~r~aIrAIg~lA~k~~~-~a~~cV~~Ll~ll~~~~-- 418 (746)
T PTZ00429 370 LKEL-------AEYAS-----------G----VD------MVFVVEVVRAIASLAIKVDS-VAPDCANLLLQIVDRRP-- 418 (746)
T ss_pred HHHH-------HHHhh-----------c----CC------HHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCc--
Confidence 0000 00110 0 00 14788888999999877653 45678888888887543
Q ss_pred CchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc--C-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHH
Q 008533 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL--D-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (562)
Q Consensus 405 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l--~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il 481 (562)
- ....++..+..+....++. + +++.+...+ . =.+|..|.+.+|.+|+++..++. .+.++
T Consensus 419 -~-~v~e~i~vik~IlrkyP~~---~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~----------a~~~L 480 (746)
T PTZ00429 419 -E-LLPQVVTAAKDIVRKYPEL---L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN----------GKDII 480 (746)
T ss_pred -h-hHHHHHHHHHHHHHHCccH---H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh----------HHHHH
Confidence 2 2234566677776654432 1 344444433 1 25689999999999999987642 34566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHH
Q 008533 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI 520 (562)
Q Consensus 482 ~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~ 520 (562)
..++..+.+.++.||.....+...+.-..++...+.+..
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~ 519 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNR 519 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 666677777789999998888888877665444333333
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=1.2e-13 Score=131.16 Aligned_cols=394 Identities=13% Similarity=0.108 Sum_probs=297.2
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcC-cC---chHHHHHHHH-HHhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGG-IA---GWLELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~-~~---~w~~ll~~l~-~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
.+.+.+.+.-..-|++++.-+-.+++... .+ ....++..+. ....+++.+.|.+++..+....-..+..-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~---- 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA---- 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH----
Confidence 34567777778889999999999998642 22 2345566443 344566777888999888887766665322
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 008533 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
.+...++|+++.+++|++..+|--|++.+..++....+.+..+++.+...++++..+.+..++.. .+.+..+++.
T Consensus 80 ----~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikd 154 (675)
T KOG0212|consen 80 ----GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKD 154 (675)
T ss_pred ----HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHH
Confidence 36889999999999999999999999999999987766677788888999999988888777654 4555554432
Q ss_pred Cc-cch-hhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhc
Q 008533 252 RP-SFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (562)
Q Consensus 252 ~~-~~~-~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~ 329 (562)
-. +.- .=+++.++|.+-..+...++..|...++.+..+-..+ .-.+-.|++.+++.++.++....+
T Consensus 155 IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~---------- 222 (675)
T KOG0212|consen 155 IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSD---------- 222 (675)
T ss_pred hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcH----------
Confidence 11 111 2357889999988888888999998888777776552 223446777777777766642221
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---c-hhhhhHHHHHHHHcCCCCCC
Q 008533 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASGDEA 405 (562)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~l~~~l~~~l~~~~~~~ 405 (562)
.+|..+..+++.+-..+.. . -.+.+++.+...+++++
T Consensus 223 ------------------------------------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~--- 263 (675)
T KOG0212|consen 223 ------------------------------------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSE--- 263 (675)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCc---
Confidence 3565566666655554422 1 24577888888888888
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh-hHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP-LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
...+..|+..+..+..-.++.+-+++..++..+++++.|..+ .++..+..+-+.+.+.+...... ..--+..+++.+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--cccchHHHHHHH
Confidence 889999999999999988888899999999999999998777 47777766666666555432111 112356999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.+.+.++....|.++...+..+....+..+..+..++...|++.+.+.++.+...+++.++.++..-.
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 99999998999999999999999999999999999999999999999999999899999988876433
No 31
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.65 E-value=1.4e-12 Score=125.13 Aligned_cols=516 Identities=16% Similarity=0.152 Sum_probs=292.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC--CC-hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh------hc--
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA------YK-- 84 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~--~~-~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~------w~-- 84 (562)
.+..+|-..-+.... -|+.+...|..-..+ |. ...-++.++.+ .+-+++-|+.-..++-+.+-+. +-
T Consensus 169 ~v~rllLkvKNG~~~-mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~-r~LeDqerhl~vk~idr~Ly~lddl~~pyvhk 246 (975)
T COG5181 169 DVYRLLLKVKNGGKR-MRMEGLRILTDKAVNFGAAAVFNKVLPMLMS-RELEDQERHLVVKLIDRLLYGLDDLKVPYVHK 246 (975)
T ss_pred hHHHHHhhcccCCch-hhHHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhhhhhHhHHHHHHHHHHhcccccccceee
Confidence 345555555667777 899999998774432 22 12334444443 3788889988877777666321 10
Q ss_pred --------cCChhhH-----HHHHHHHhh--hh-----------hCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHH
Q 008533 85 --------SMSPSNQ-----QYIKSELLP--CL-----------GAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (562)
Q Consensus 85 --------~l~~~~~-----~~i~~~ll~--~l-----------~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~ 138 (562)
.++++.+ ..|..+|.. .| .+.++.||+..+.+++.++... ..++++|+|..
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al---gv~~llpfl~a 323 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL---GVEELLPFLEA 323 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh---CcHHHHHHHHH
Confidence 0222222 122222222 11 2358999999999999999865 56889999999
Q ss_pred HhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHh
Q 008533 139 CLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV 217 (562)
Q Consensus 139 ~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~ 217 (562)
.+.|. ++..|++++.+..+|+...+....+ ++..++..+-+++.|....||..+..++..+.+...+.-..
T Consensus 324 ~c~SrkSw~aRhTgiri~qqI~~llG~s~l~--------hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie 395 (975)
T COG5181 324 LCGSRKSWEARHTGIRIAQQICELLGRSRLS--------HLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE 395 (975)
T ss_pred HhcCccchhhhchhhHHHHHHHHHhCccHHh--------hhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH
Confidence 88886 8999999999999999988875443 46777888888999988889988888888877754432233
Q ss_pred chHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHh-------------
Q 008533 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEAC------------- 283 (562)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~------------- 283 (562)
.++.++..+.+..+..-.......+++.+.++-.. |+....+-...+.+++..+++++++.....+
T Consensus 396 ~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t 475 (975)
T COG5181 396 QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT 475 (975)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC
Confidence 34444444443322111111222222222222111 1111111112222222222211111100000
Q ss_pred ----------h----hHHH------------------hhcc---ccc-----------hhhHHhhhhHHHHHHHhhcccC
Q 008533 284 ----------E----FWHS------------------YFEA---QLP-----------HENLKEFLPRLVPVLLSNMIYA 317 (562)
Q Consensus 284 ----------~----~l~~------------------~~~~---~~~-----------~~~~~~~l~~l~~~l~~~l~~~ 317 (562)
+ ||.. +++. +.. .+-.+.....++..++..+-..
T Consensus 476 p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~ 555 (975)
T COG5181 476 PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL 555 (975)
T ss_pred HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc
Confidence 0 1111 0000 000 0000111112222222222211
Q ss_pred ---hhhHhhh-h----hhhccCCCCCCCCCCcccccccC----CCC----CCCCC-CCccccchhcHhhhHHHHHHHHHh
Q 008533 318 ---DDDESLV-E----AEEDESLPDRDQDLKPRFHSSRL----HGS----ENPED-DDDDIVNVWNLRKCSAAALDVLSN 380 (562)
Q Consensus 318 ---~~~~~~~-~----~~~~~~~~~~~~~i~~~~~~~~~----~~~----~~~~~-~~~d~~~~~~~r~~a~~~l~~l~~ 380 (562)
+...+.+ + +-.+....+. -|.|.|..... .+. .-... -.--.+....+|.-|.++.+.|+.
T Consensus 556 ~~dErleerl~d~il~Afqeq~~t~~--~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~ 633 (975)
T COG5181 556 GFDERLEERLYDSILNAFQEQDTTVG--LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAK 633 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhcccccc--EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 1111110 0 0000001111 11121111000 000 00000 000000112478888888888877
Q ss_pred hh---cc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHH
Q 008533 381 VF---GD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCW 455 (562)
Q Consensus 381 ~~---~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~ 455 (562)
.+ |+ +.+..+-..+.+.+.... +.+--.-+.++.+|..... +.+.|-+.+++|.+.+.|++++..|..+.+.
T Consensus 634 vlk~c~e~~~l~klg~iLyE~lge~y---pEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~ 710 (975)
T COG5181 634 VLKACGETKELAKLGNILYENLGEDY---PEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIA 710 (975)
T ss_pred HHHhcchHHHHHHHhHHHHHhcCccc---HHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHH
Confidence 65 44 556666677777777766 6766666777777776553 5667889999999999999999999999999
Q ss_pred HHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhh
Q 008533 456 TLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR 535 (562)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~ 535 (562)
.+|.++..-++. ....-+-.|--.|+.+|+..+..+|.+|..+++.+.+..++ ++++..|++-+...+..
T Consensus 711 lvg~I~~~~pey----i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP------qdvL~~LlnnLkvqeRq 780 (975)
T COG5181 711 LVGTICMNSPEY----IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP------QDVLDILLNNLKVQERQ 780 (975)
T ss_pred HHHHHHhcCccc----CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH------HHHHHHHHhcchHHHHH
Confidence 999999876543 23444667777888899999999999999999999998765 56777777766654444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccc
Q 008533 536 NLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 536 ~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
.+....-+|+.+++.+|+--..|-
T Consensus 781 ~RvctsvaI~iVae~cgpfsVlP~ 804 (975)
T COG5181 781 QRVCTSVAISIVAEYCGPFSVLPT 804 (975)
T ss_pred hhhhhhhhhhhhHhhcCchhhHHH
Confidence 444777788888888886544443
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.65 E-value=7.5e-13 Score=137.56 Aligned_cols=475 Identities=16% Similarity=0.121 Sum_probs=295.1
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhH
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~-~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~ 91 (562)
..+++.+.++... .+.. .|+.|...|-.+... .++-....+++..-.+.+...|+++=..+...... +++..
T Consensus 5 ~~~el~~~~~~~~-~~~~-~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-----~~~~~ 77 (526)
T PF01602_consen 5 ISQELAKILNSFK-IDIS-KKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE-----DPELL 77 (526)
T ss_dssp HHHHHHHHHHCSS-THHH-HHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT-----SHHHH
T ss_pred HHHHHHHHHhcCC-CCHH-HHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-----chhHH
Confidence 4467778887644 4656 778888877765431 11112223333322378899999888766666333 34455
Q ss_pred HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
-.+-+.+.+-|.++++.+|..|..+++.+.. ++-.+.+++.+.+++.+++|.+|..|+.++..+....+..+
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~----- 149 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV----- 149 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH-----
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH-----
Confidence 5566777778889999999999999999884 45678899999999999999999999999999999866533
Q ss_pred CCCcchhHh-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 008533 172 GLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 172 ~~~~~~~~~-il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~ 250 (562)
.. +++.+.+.+.+.++.|+.+|+.++..+ ...++.....++.+.+.+.+.+...++-.+..+++.|..++.
T Consensus 150 -------~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 150 -------EDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp -------HGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred -------HHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 33 789999999999999999999999988 333332223445556666665566777777777777766554
Q ss_pred hCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhcc
Q 008533 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (562)
Q Consensus 251 ~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 330 (562)
..+..... ..+++.+...+++.++.|...++.++..+..... .+..+++.+...+...+.++....-+--.
T Consensus 222 ~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 222 MEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 43333211 2344444444445555566666655555443311 22233333333333222111100000000
Q ss_pred -CCCCCCCCCCc---ccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc-CCCCCC
Q 008533 331 -SLPDRDQDLKP---RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEA 405 (562)
Q Consensus 331 -~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~ 405 (562)
-.......+.. .+... . . ++ ..++|..+.+.+..++..- -...+++.+..++. .++
T Consensus 293 ~l~~~~~~~v~~~~~~~~~l-----~-~--~~-----d~~Ir~~~l~lL~~l~~~~---n~~~Il~eL~~~l~~~~d--- 353 (526)
T PF01602_consen 293 QLAQSNPPAVFNQSLILFFL-----L-Y--DD-----DPSIRKKALDLLYKLANES---NVKEILDELLKYLSELSD--- 353 (526)
T ss_dssp HHCCHCHHHHGTHHHHHHHH-----H-C--SS-----SHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHC-----
T ss_pred Hhhcccchhhhhhhhhhhee-----c-C--CC-----ChhHHHHHHHHHhhccccc---chhhHHHHHHHHHHhccc---
Confidence 00000000000 00000 0 0 00 1246777666666665433 23456666666663 335
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
...|..++..++.++... .+.....++.+++.+......+...++..+.++.... ......++..+.
T Consensus 354 ~~~~~~~i~~I~~la~~~----~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~---------~~~~~~~l~~L~ 420 (526)
T PF01602_consen 354 PDFRRELIKAIGDLAEKF----PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN---------PELREKILKKLI 420 (526)
T ss_dssp HHHHHHHHHHHHHHHHHH----GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS---------TTTHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhcc----CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC---------hhhhHHHHHHHH
Confidence 667888888888877643 4567778888888888777777777777776666542 333567788888
Q ss_pred HHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 486 KRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 486 ~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
..+.+ .++.++..++|.+|.+.+...+ .. ..+.++..+..........++..++.++..+....+.
T Consensus 421 ~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 421 ELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp HHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 88876 4688899999999998888765 22 6777778777777766666777899999888876654
No 33
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.62 E-value=4.6e-12 Score=141.20 Aligned_cols=483 Identities=14% Similarity=0.057 Sum_probs=291.8
Q ss_pred CCCCHHHHHHHHHHHHHhh-c---------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH
Q 008533 26 SPSSTADKSQIWQQLQQYS-Q---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~-~---------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~ 95 (562)
++|.. .+..|...|..+. . ..+.++.|..++.+ +.++.+|..|+-.|.+...+. ++.+..+.
T Consensus 200 S~d~~-lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~~~~VRE~AA~AL~nLAs~s-----~e~r~~Iv 271 (2102)
T PLN03200 200 SGNSD-AQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GNEVSVRAEAAGALEALSSQS-----KEAKQAIA 271 (2102)
T ss_pred CCCHH-HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CCChHHHHHHHHHHHHHhcCC-----HHHHHHHH
Confidence 45656 7888888775532 2 34667889998875 667799999999998876542 33333332
Q ss_pred -----HHHhhhhhCCc---------hHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhh
Q 008533 96 -----SELLPCLGAAD---------RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICE 160 (562)
Q Consensus 96 -----~~ll~~l~~~~---------~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~ 160 (562)
+.|++.+..++ ..+++.+..+++.|+... +.+++.|.+.+.+. +......++.++.++..
T Consensus 272 ~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 272 DAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 34555554332 345788999999998632 55666666655443 22222222333333321
Q ss_pred cchhcc-------------------cccCCCC-Cc------------c------hhHhhHHHHHHhhcCCCHHHHHHHHH
Q 008533 161 DIPQVL-------------------DSDVPGL-AE------------C------PINIFLPRLLQFFQSPHTSLRKLSLG 202 (562)
Q Consensus 161 ~~~~~~-------------------~~~~~~~-~~------------~------~~~~il~~l~~~l~~~~~~vr~~al~ 202 (562)
.+.... ....+.. .+ . .-.+..+.++.++...+.+++..++.
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 111100 0000000 00 0 00122334555566666788888888
Q ss_pred HHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHH
Q 008533 203 SVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVAL 280 (562)
Q Consensus 203 ~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~ 280 (562)
++..+....++...... ...++.+.+++.++++..+..++..+..++....+......+ ..+|.+.+.+.+.+.+++.
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe 506 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE 506 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 88887754332211111 123677777778788899999999999887654433222222 4677778888888999999
Q ss_pred HHhhhHHHhhccccchhhHHhhh--hHHHHHHHhhcccChhhHh---hh-----hhhhccCCCCCCCCCCcccccccCCC
Q 008533 281 EACEFWHSYFEAQLPHENLKEFL--PRLVPVLLSNMIYADDDES---LV-----EAEEDESLPDRDQDLKPRFHSSRLHG 350 (562)
Q Consensus 281 ~a~~~l~~~~~~~~~~~~~~~~l--~~l~~~l~~~l~~~~~~~~---~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~ 350 (562)
.|...+..++... ...+..+ ...++.++..+...+.... .| -...+ .+-+++.+... .
T Consensus 507 eAawAL~NLa~~~---~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d------~~~I~~Lv~LL---l 574 (2102)
T PLN03200 507 DSATVLWNLCCHS---EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD------AATISQLTALL---L 574 (2102)
T ss_pred HHHHHHHHHhCCc---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc------hhHHHHHHHHh---c
Confidence 9999999998652 1222222 1344555444443321111 01 00000 00111111110 0
Q ss_pred CCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-ch------hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc
Q 008533 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EI------LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC 423 (562)
Q Consensus 351 ~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~------~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~ 423 (562)
.+ + ......+.+.++.+...... +. ....++.+.+.+++++ ...++.|+.+++.++.+.
T Consensus 575 sd-----d------~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs---~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 575 GD-----L------PESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK---EETQEKAASVLADIFSSR 640 (2102)
T ss_pred CC-----C------hhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCC
Confidence 00 0 12344455566655543322 11 1346788899999888 899999999999999877
Q ss_pred hhhhhh-hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchh-hH-HHHHHHHHHHhccCCHHHHHHHH
Q 008533 424 IKGLYP-HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE-QF-EKVLMGLLKRILDTNKRVQEAAC 500 (562)
Q Consensus 424 ~~~~~~-~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~~-~~il~~l~~~l~d~~~~vr~~a~ 500 (562)
.+.... .....+|.++..+.+.+..++..|+|+|+++.....+ .+.. +. ..+++.|++.|++.+..++..|+
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~-----~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al 715 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE-----NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAV 715 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH-----HHHHHHHHcCCHHHHHHHHhCCChHHHHHHH
Confidence 654433 2345788899999999999999999999999964321 1222 22 35899999999999999999999
Q ss_pred HHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 501 SAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 501 ~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.+|.+++......-.-.-...+..|++++.....+.++.+..+|..+.+.-.
T Consensus 716 ~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 716 CALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 9999999865211111113457888889998888888899999888776544
No 34
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.59 E-value=8.2e-12 Score=139.24 Aligned_cols=426 Identities=12% Similarity=0.132 Sum_probs=284.1
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH---hhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT---AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~---~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~ 124 (562)
+....|..++.. .+.+++..++..+++...+ .|..+. .....+.|++.|.+++..+++.++..++.++...
T Consensus 404 daik~LV~LL~~---~~~evQ~~Av~aL~~L~~~~~e~~~aIi---~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n 477 (2102)
T PLN03200 404 EAKKVLVGLITM---ATADVQEELIRALSSLCCGKGGLWEALG---GREGVQLLISLLGLSSEQQQEYAVALLAILTDEV 477 (2102)
T ss_pred cchhhhhhhhcc---CCHHHHHHHHHHHHHHhCCCHHHHHHHH---HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 445556666653 4567888888888776533 233221 1122457888888889999999999999998753
Q ss_pred CcCch----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh--HhhHHHHHHhhcCCCHHHHH
Q 008533 125 GIAGW----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRK 198 (562)
Q Consensus 125 ~~~~w----~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~vr~ 198 (562)
....+ .+.+|.|.+++++++...++.|.++|+.++..-... . ..+ ...+|.+++.+++++.+++.
T Consensus 478 denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qi-r--------~iV~~aGAIppLV~LL~sgd~~~q~ 548 (2102)
T PLN03200 478 DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDI-R--------ACVESAGAVPALLWLLKNGGPKGQE 548 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHH-H--------HHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 22333 456899999999999999999999999998743221 1 112 35789999999999999999
Q ss_pred HHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccc--hhhh--HHHHHHHHHhhcCCC
Q 008533 199 LSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF--LEPH--LRNLFEYMLQVNKDT 274 (562)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~--~~~~--l~~i~~~~~~~~~~~ 274 (562)
.|++++.+++...... .++.+..++..+++.++..+++.+..+....... .... -..-++.+....++.
T Consensus 549 ~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg 621 (2102)
T PLN03200 549 IAAKTLTKLVRTADAA-------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS 621 (2102)
T ss_pred HHHHHHHHHHhccchh-------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC
Confidence 9999999987643211 2344555566667888888888887776543221 1111 123567777778888
Q ss_pred ChhHHHHHhhhHHHhhccccchhhHH-hhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCC
Q 008533 275 DDDVALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (562)
Q Consensus 275 ~~~v~~~a~~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 353 (562)
++.++..|..++..++... ..... -.....++.++..+...+
T Consensus 622 s~~ikk~Aa~iLsnL~a~~--~d~~~avv~agaIpPLV~LLss~~----------------------------------- 664 (2102)
T PLN03200 622 KEETQEKAASVLADIFSSR--QDLCESLATDEIINPCIKLLTNNT----------------------------------- 664 (2102)
T ss_pred CHHHHHHHHHHHHHHhcCC--hHHHHHHHHcCCHHHHHHHHhcCC-----------------------------------
Confidence 8999999999999998762 11111 122334555554443211
Q ss_pred CCCCCccccchhcHhhhHHHHHHHHHhhhcc-c----hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhh
Q 008533 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-E----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY 428 (562)
Q Consensus 354 ~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~----~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~ 428 (562)
..+++.+..+|..+...... + +-...++.+.+.+++++ ...+..++.+|+.++........
T Consensus 665 -----------~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d---~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 665 -----------EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS---IEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred -----------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC---hHHHHHHHHHHHHHHcCchHHHH
Confidence 13677788899888863321 1 12346778888998888 89999999999999986642211
Q ss_pred hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchh--hHHHHHHHHHHHhccCCHHHHHH--HHHHHH
Q 008533 429 PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE--QFEKVLMGLLKRILDTNKRVQEA--ACSAFA 504 (562)
Q Consensus 429 ~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~~~il~~l~~~l~d~~~~vr~~--a~~al~ 504 (562)
-.-...++.+...+++.++.+|..|+|++.+++...+.. +.... .....+..+..+|+..+.+.... |..+|.
T Consensus 731 i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~---~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~ 807 (2102)
T PLN03200 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD---DVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALA 807 (2102)
T ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh---HHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 112346889999999999999999999999999876521 00112 23567888888888776555554 888888
Q ss_pred HHHHHc-cccc--ccc-----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 505 TLEEEA-AEEL--APR-----LEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 505 ~l~~~~-~~~~--~~~-----l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
.+.+.- +..+ .|| .+.-+..|+..+.......+..+++.|+.+++
T Consensus 808 ~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 808 LLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 888752 1111 111 23344555555555445556677777766554
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.59 E-value=3.3e-10 Score=117.71 Aligned_cols=464 Identities=12% Similarity=0.063 Sum_probs=283.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
.+|...|. +.|.. .|+.|.+.+-.+-. .-+......+++..-.+.+...|++.-+.+.+... ..++..-.
T Consensus 35 ~ELr~~L~---s~~~~-~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~-----~~pelalL 105 (746)
T PTZ00429 35 AELQNDLN---GTDSY-RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR-----LQPEKALL 105 (746)
T ss_pred HHHHHHHH---CCCHH-HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc-----cChHHHHH
Confidence 44555553 66766 78888887766442 22222222333322237799999999988887733 33444445
Q ss_pred HHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCC
Q 008533 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (562)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~ 173 (562)
..+.+.+-+.++++.+|-.+.+.++.|-. ++..+.+++.+.+++.+.+|.+|.+|..++..+....+....
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~------ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY------ 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc------
Confidence 56777778889999999888887776653 456677888999999999999999999999999886664321
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc
Q 008533 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (562)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~ 253 (562)
-..+++.+..++.|.++.|...|+.++..+....|..+. .....+..++..+.+-++-.+..++++|.. ..|
T Consensus 177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P 248 (746)
T PTZ00429 177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP 248 (746)
T ss_pred ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC
Confidence 134677788889999999999999999999876554332 233445556666555556666666776644 222
Q ss_pred cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHh--------hh-
Q 008533 254 SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES--------LV- 324 (562)
Q Consensus 254 ~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~--------~~- 324 (562)
.. ......++..+...+++.++.|...|+.++..+.... ........+..+.+.++..+. ++.++. ..
T Consensus 249 ~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 249 SD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIHALL 325 (746)
T ss_pred CC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHHHHH
Confidence 21 2223467777777777888889888888877776431 112222222223232222211 111100 00
Q ss_pred hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCC
Q 008533 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (562)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (562)
...|.-- ..+++-++... + |. ..++... |+.|.....+.-+..++..+.++..+.+
T Consensus 326 ~~~P~lf----~~~~~~Ff~~~-----~-------Dp---~yIK~~K---LeIL~~Lane~Nv~~IL~EL~eYa~d~D-- 381 (746)
T PTZ00429 326 VIFPNLL----RTNLDSFYVRY-----S-------DP---PFVKLEK---LRLLLKLVTPSVAPEILKELAEYASGVD-- 381 (746)
T ss_pred HHCHHHH----HHHHHhhhccc-----C-------Cc---HHHHHHH---HHHHHHHcCcccHHHHHHHHHHHhhcCC--
Confidence 0000000 00011111100 0 10 1244444 4444444445445677777888887777
Q ss_pred CchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 405 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
...+..++.++|.++.... .....++..++..+.+....+ ..++.++..+....+ ..+ ++..+
T Consensus 382 -~ef~r~aIrAIg~lA~k~~----~~a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP--------~~~---il~~L 444 (746)
T PTZ00429 382 -MVFVVEVVRAIASLAIKVD----SVAPDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYP--------ELL---MLDTL 444 (746)
T ss_pred -HHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCc--------cHH---HHHHH
Confidence 8888999999999986543 457888998888887654444 346666666655432 112 44555
Q ss_pred HHHhc-c--CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 485 LKRIL-D--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 485 ~~~l~-d--~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
...+. + .++..|....|.||.+++... ..+.+++.+++.+......++..++.+...+.-..++
T Consensus 445 ~~~~~~~~i~e~~AKaaiiWILGEy~~~I~-----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~ 511 (746)
T PTZ00429 445 VTDYGADEVVEEEAKVSLLWMLGEYCDFIE-----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ 511 (746)
T ss_pred HHhhcccccccHHHHHHHHHHHHhhHhhHh-----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH
Confidence 44331 1 257888888999999887543 3566777666555555555666777777766655543
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.8e-12 Score=123.93 Aligned_cols=388 Identities=14% Similarity=0.118 Sum_probs=273.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hccCChhhHHHHHHHHhhhhh-CCchHHHHHHHHHHHHHHHhcCc--Cch--HHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQA 135 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~-w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~--~~w--~~ll~~ 135 (562)
+.+...+.-+...++..+.+. -+.+..-.+..+.+.+.+.|. +.++.++..++-++..|+..... +.. ..-+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 456666777777788777542 144556666677788888886 56799999999999999986522 111 345788
Q ss_pred HHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhc-hh
Q 008533 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLM-PS 213 (562)
Q Consensus 136 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~-~~ 213 (562)
+++++.+++..+++-|.++|+.++.+.+.. +.. -.-..+++.++..+...+. .+...+.+++..++... |.
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~------vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDC-RDY------VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHH-HHH------HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999886643 111 1224577888888887765 68888999999999865 43
Q ss_pred hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.-.+.+..+++.+..++.+.|+++...+++++..+....++.+.-.++ .+++.+...+...+..++..|+..++.++..
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 334566788999999999999999999999999999988888766555 6778888888888888999999999998765
Q ss_pred ccchhhHHh-hhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhH
Q 008533 293 QLPHENLKE-FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (562)
Q Consensus 293 ~~~~~~~~~-~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (562)
....... .-...+|.+...+..++. -+++..|
T Consensus 310 --~d~QTq~vi~~~~L~~l~~ll~~s~~---------------------------------------------~~ikkEA 342 (514)
T KOG0166|consen 310 --SDEQTQVVINSGALPVLSNLLSSSPK---------------------------------------------ESIKKEA 342 (514)
T ss_pred --cHHHHHHHHhcChHHHHHHHhccCcc---------------------------------------------hhHHHHH
Confidence 1111211 112345555444432211 1367778
Q ss_pred HHHHHHHHhhhcc----chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhhhcCCC
Q 008533 372 AAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLLDDK 445 (562)
Q Consensus 372 ~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~--~~~~l~~~l~d~ 445 (562)
..+++.++..-.. -+-..++|.+...+++.+ .+.|..|.++++.++.+.......|+-+ +++.+...|.-+
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e---f~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~ 419 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE---FDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP 419 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc---hHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC
Confidence 8888888764432 122478899999999988 9999999999999998776444445432 677788888767
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH-----HHHhc-cCCHHHHHHHHHHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL-----LKRIL-DTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l-----~~~l~-d~~~~vr~~a~~al~~l~~ 508 (562)
+..+...++.+++.+.+.-... ..... .-+...++.. +..|+ +.+..+...|...+.++..
T Consensus 420 D~~ii~v~Ld~l~nil~~~e~~-~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 420 DVKIILVALDGLENILKVGEAE-KNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred ChHHHHHHHHHHHHHHHHHHHh-ccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 7888889999999988765432 11000 1222222211 22333 3456777777777766653
No 37
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.8e-12 Score=136.32 Aligned_cols=386 Identities=15% Similarity=0.145 Sum_probs=278.2
Q ss_pred CchHHHHHHHHHHHHHHHhcC---cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhh
Q 008533 105 ADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (562)
Q Consensus 105 ~~~~vr~~~~~~i~~i~~~~~---~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~i 181 (562)
..+.=|+.+|..++.|++... ....+.++|.|...=-|+++.++.+-..+...+..+..... +.+.++|
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v--------d~y~neI 1040 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV--------DEYLNEI 1040 (1702)
T ss_pred chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH--------HHHHHHH
Confidence 456678899999999998753 35678899999998889999988888778888877655443 3578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhch-hhHHhchHHHHHHHhhhccCCCHHHHHHH---HHHHHHHHhhC-----
Q 008533 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKLV---CAAFNLLIEVR----- 252 (562)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~L~~l~~~~----- 252 (562)
+..++..+.+..+.||++++-++..++..-| +.+.+.++.++..++....|-.+.+|.++ ++.|.+++-..
T Consensus 1041 l~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~ 1120 (1702)
T KOG0915|consen 1041 LDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTN 1120 (1702)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999999998765 45667788888888888776667777765 45555554322
Q ss_pred ccchhhhHHHHHHHHHh-hcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccC
Q 008533 253 PSFLEPHLRNLFEYMLQ-VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (562)
Q Consensus 253 ~~~~~~~l~~i~~~~~~-~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 331 (562)
+..-...+..++|+++. ..-+.-+++|..++..+..+++. ....++|++++++|.++......+..+-++-+
T Consensus 1121 ~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls----- 1193 (1702)
T KOG0915|consen 1121 GAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLIPLLLNAYSELEPQVLNYLS----- 1193 (1702)
T ss_pred cccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHHHHHHHHccccchHHHHHHH-----
Confidence 22234567788898885 23366688999999999999887 66789999999999998776655443222100
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccc-cchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHH
Q 008533 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDI-VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDRE 410 (562)
Q Consensus 332 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (562)
-+. .+.+-+--|. -.+-.-.....++++.+.......++..++|.+.+.+.++-+ -..|.
T Consensus 1194 -------------~r~----~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg--l~Tkv 1254 (1702)
T KOG0915|consen 1194 -------------LRL----INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG--LGTKV 1254 (1702)
T ss_pred -------------Hhh----hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--CCcch
Confidence 000 0000000000 000001122456788888877778889999999999886532 56688
Q ss_pred HHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhcc
Q 008533 411 AAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD 490 (562)
Q Consensus 411 aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d 490 (562)
++...+..++..++.++.||.+.++..+++.+.|.++.+|.+...+.|.++++-.+ .....+++.++..++ .+
T Consensus 1255 g~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~----dq~qKLie~~l~~~l---~k 1327 (1702)
T KOG0915|consen 1255 GCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSP----DQMQKLIETLLADLL---GK 1327 (1702)
T ss_pred hHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHHHh---cc
Confidence 88888899999898899999999999999999999999999999999999987532 123334444443333 22
Q ss_pred CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 491 TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 491 ~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
. +..+..+|.++.++.....+.+..|...+++..+-.....
T Consensus 1328 ~-es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1328 D-ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred C-CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence 2 2223567777777777778888888888888766655543
No 38
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.57 E-value=2.4e-12 Score=123.47 Aligned_cols=345 Identities=10% Similarity=0.132 Sum_probs=243.8
Q ss_pred HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC----ch-HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA----GW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~----~w-~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
.+-..++..+.++.+..|++.+..+..++...+.. .. ..++..++..++..+.. ....+.|++...-..+...
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~~~il~~f~tv~vsl~~r~- 598 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-VGLILPCFSTVLVSLEFRG- 598 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-ccEEEecccceeeehhhcc-
Confidence 34456777788888888999888888888765332 22 23556666666544321 1112233333333222211
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH-HhchHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 246 (562)
+++...++..+++.|++..+.+|..|.+..++++..+...- ...+..+=..+.+.++..++++.-.++.+++
T Consensus 599 -------kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 599 -------KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred -------CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 35678899999999999999999999999988876543110 1122333345666677788999888888888
Q ss_pred HHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhh
Q 008533 247 LLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (562)
Q Consensus 247 ~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~ 325 (562)
.+..... ..+.|-+..++|.+.-.+++.+..+...++.+++.+|......-..++.+.-.+..+ ..+. .|
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv-d~Lk-------s~- 742 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELV-DSLK-------SW- 742 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH-HHHH-------Hh-
Confidence 8876543 334555667777777778888999999999999999987222222233332222211 1111 01
Q ss_pred hhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCC
Q 008533 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (562)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (562)
+..+|+.|.++++.++..+|.+ .++..+.+.++.++
T Consensus 743 --------------------------------------nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqe--- 778 (975)
T COG5181 743 --------------------------------------NKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQE--- 778 (975)
T ss_pred --------------------------------------hHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHH---
Confidence 1258999999999999999873 56666777777777
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
-+.|.+...+++-+++.|+.. .++|.++.-..-++..|+...+.++.-+.+++.+. ..+|+..+.|.+-
T Consensus 779 Rq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-----s~dYvy~itPlle 847 (975)
T COG5181 779 RQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-----SLDYVYSITPLLE 847 (975)
T ss_pred HHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-----HHHHHHHhhHHHH
Confidence 788999999999999888632 27888888888899999999999999999998764 5889999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 486 KRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 486 ~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
..|.|.++..|..|...+.++.-+|
T Consensus 848 DAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 848 DALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred hhhcccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988666
No 39
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3.1e-11 Score=127.31 Aligned_cols=432 Identities=16% Similarity=0.191 Sum_probs=299.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChh--hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTC 139 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~--~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~ 139 (562)
+.++..|+++.+-|--.+++. .+.++- ....|...+...|.+.++.++..+++.++.+......+.-.+++..|.+-
T Consensus 829 s~nph~R~A~~VWLLs~vq~l-~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~t 907 (1702)
T KOG0915|consen 829 SPNPHERQAGCVWLLSLVQYL-GQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVNT 907 (1702)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-ccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHHH
Confidence 789999999998877776653 222221 12456678888999999999999999999887765444445666666655
Q ss_pred hccCChh---------HHh----------HHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC-CHHHHHH
Q 008533 140 LDSNDIN---------HME----------GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKL 199 (562)
Q Consensus 140 l~~~~~~---------~~~----------~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~ 199 (562)
+..+.-. .-+ +.+.+...+|.-..+.-. ..++=.|+++.+++ .+.=|..
T Consensus 908 l~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q-----------PdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 908 LTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ-----------PDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC-----------hHHHHHHHHHhhhhchhhcccc
Confidence 5433210 000 012222222221111100 22333345544443 3455666
Q ss_pred HHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHH
Q 008533 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (562)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~ 279 (562)
|.--|+.+.....+.+.+++..+++.++..--|++..++.+...++..++......+..|+.+|+.-++..+.+.+..||
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVR 1056 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVR 1056 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 66666777666666778889999999999888999999999999999999888888889999999999999999999999
Q ss_pred HHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 008533 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (562)
Q Consensus 280 ~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (562)
..+.-.+..+.... ....+...++.+...+++.| ||+.
T Consensus 1057 easclAL~dLl~g~-~~~~~~e~lpelw~~~fRvm----DDIK------------------------------------- 1094 (1702)
T KOG0915|consen 1057 EASCLALADLLQGR-PFDQVKEKLPELWEAAFRVM----DDIK------------------------------------- 1094 (1702)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHH----HHHH-------------------------------------
Confidence 99988888887652 33455666666666666544 1111
Q ss_pred cccchhcHhhhHHHHHHHHHhhh-----------ccchhhhhHHHHHH-HHcCCCCCCchhHHHHHHHHHHHhhcchhhh
Q 008533 360 DIVNVWNLRKCSAAALDVLSNVF-----------GDEILPTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGL 427 (562)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~-----------~~~~~~~l~~~l~~-~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~ 427 (562)
-++|.+|..+.+.++..+ |.+++..++|++.. .+.+.- ..+|..++..+..++...+..+
T Consensus 1095 -----EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v---~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1095 -----ESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKV---NEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccch---HHHHHHHHHHHHHHHHhchhhh
Confidence 157888877777766544 23567788888743 333444 7899999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCChhHH-HHHHHHHHHhHHHHhhhc-----C-----------CCcchhhHHHHHHHHHHHhcc
Q 008533 428 YPHLSEIVAFLIPLLDDKFPLIR-SISCWTLSRFSKFIVQDI-----G-----------HQNGREQFEKVLMGLLKRILD 490 (562)
Q Consensus 428 ~~~l~~~~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~-----~-----------~~~~~~~~~~il~~l~~~l~d 490 (562)
.||++.++|.++..+..-.|.|- +.++.+.+.=.+.+.... + +......+++++|.+.+.+..
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999998876544433 344444332222211100 0 112345577788888877765
Q ss_pred C-CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 491 T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 491 ~-~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
. .-..|..++..+..+...++..+.||...++..|+..+.+.....++....|.|.++....++.
T Consensus 1247 sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq 1312 (1702)
T KOG0915|consen 1247 SVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ 1312 (1702)
T ss_pred cCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH
Confidence 4 3455778888888999999999999999999999999998777778888888888888777653
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.50 E-value=8.5e-11 Score=119.04 Aligned_cols=396 Identities=16% Similarity=0.135 Sum_probs=256.1
Q ss_pred HhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcc
Q 008533 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (562)
Q Consensus 98 ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~ 176 (562)
++.+|.+.+...-..++.++..+.....+ ...+++.+.|...+.++++.+|..++..++.+.......... -
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-------~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-------L 115 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-------h
Confidence 67778766666667888999999987533 447889999999999999999999999999988765442210 0
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccc
Q 008533 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (562)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 255 (562)
.-..+++.++.++.+++..|...|++++..+....+ .+...++ ..+..+.......++.+|..+++++..++...++.
T Consensus 116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 126689999999999999999999999999987532 2211111 12455555555557889999999999999888777
Q ss_pred hhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCC
Q 008533 256 LEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (562)
Q Consensus 256 ~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 334 (562)
+.-... .+++.++..+++.|.-++..+++++..+++.+...+++.. ..+++.+...+...++|.
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~--~gi~~~L~~~l~~~~~dp------------- 259 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ--QGIFDKLSNLLQDSEEDP------------- 259 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh--CCHHHHHHHHHhccccCC-------------
Confidence 633332 4888888888888878899999999999987443333322 134555544443222110
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccchhcHh-hhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHH
Q 008533 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR-KCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDRE 410 (562)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r-~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~ 410 (562)
+ . ..+. .......+.++..-+. ...|.++..+.+.+.+.| ...+.
T Consensus 260 -------------------------~-~--~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d---~~~~~ 308 (503)
T PF10508_consen 260 -------------------------R-L--SSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQD---PTIRE 308 (503)
T ss_pred -------------------------c-c--cchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC---hhHHH
Confidence 0 0 0111 1122556666664222 334677777777788888 89999
Q ss_pred HHHHHHHHHhhcch--hhh----hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHH---
Q 008533 411 AAVLALGAIAEGCI--KGL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL--- 481 (562)
Q Consensus 411 aal~~l~~i~~~~~--~~~----~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il--- 481 (562)
+|+-++|.++.... ..+ .+.+..++..+..........+|.+++.+++.+...-... .+.......+..+
T Consensus 309 ~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~-~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 309 VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR-QDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHh
Confidence 99999999986542 122 2345567777777777778899999999999996543210 0000000111111
Q ss_pred -----H-HHHHHhccCCHHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008533 482 -----M-GLLKRILDTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 482 -----~-~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (562)
. .++..++.|-+.+|.++...|..++..- +...---.+.+++.+++.-...+...+..=++++..++
T Consensus 388 ~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 388 SGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred cCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 5566677778999999999999988652 11111112445555555444333333333333333333
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.49 E-value=1.2e-11 Score=134.36 Aligned_cols=273 Identities=22% Similarity=0.226 Sum_probs=192.2
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
+.|+..|.++++.||+.++..++.+.. ++.++.|.+.++++++.+|..++..|..+.+..+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~----------- 685 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP----------- 685 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----------
Confidence 456677788999999999988887642 55788888889899999999998888877542221
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccc
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 255 (562)
.+.+...|+++++.||..|+.+|..+-... ...+...+.++++.+|..++..|..+-.
T Consensus 686 ------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----- 743 (897)
T PRK13800 686 ------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD----- 743 (897)
T ss_pred ------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----
Confidence 234666778888999999998888753211 1123445678889999999998887411
Q ss_pred hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCC
Q 008533 256 LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (562)
Q Consensus 256 ~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (562)
.+.++..+.|.+++||..+.+.+..+..... .. ++.+...+.
T Consensus 744 --------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~--------~~~L~~ll~-------------------- 785 (897)
T PRK13800 744 --------VESVAGAATDENREVRIAVAKGLATLGAGGA--PA--------GDAVRALTG-------------------- 785 (897)
T ss_pred --------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc--hh--------HHHHHHHhc--------------------
Confidence 0223456788889999999988887765311 00 112211111
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHH
Q 008533 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (562)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (562)
| . .+.+|.+|..+|..+... +.+.+.+.+.+.+++ |.+|.+|+.+
T Consensus 786 ----------------D-~---------d~~VR~aA~~aLg~~g~~------~~~~~~l~~aL~d~d---~~VR~~Aa~a 830 (897)
T PRK13800 786 ----------------D-P---------DPLVRAAALAALAELGCP------PDDVAAATAALRASA---WQVRQGAARA 830 (897)
T ss_pred ----------------C-C---------CHHHHHHHHHHHHhcCCc------chhHHHHHHHhcCCC---hHHHHHHHHH
Confidence 0 0 135888888887666321 133355777888888 9999999999
Q ss_pred HHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHH
Q 008533 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (562)
Q Consensus 416 l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v 495 (562)
|+.+.. +..++.+.+.|.|+++.||..|+++|+++.. . +...+.|...++|+++.|
T Consensus 831 L~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-----------~---~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 831 LAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-----------D---PAARDALTTALTDSDADV 886 (897)
T ss_pred HHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-----------C---HHHHHHHHHHHhCCCHHH
Confidence 987642 1245788888999999999999999998621 1 234566677888999999
Q ss_pred HHHHHHHHHH
Q 008533 496 QEAACSAFAT 505 (562)
Q Consensus 496 r~~a~~al~~ 505 (562)
|..|..+|..
T Consensus 887 r~~A~~aL~~ 896 (897)
T PRK13800 887 RAYARRALAH 896 (897)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-10 Score=119.52 Aligned_cols=422 Identities=16% Similarity=0.136 Sum_probs=288.3
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~ 85 (562)
.-.++.+.+..+..-++.++|+.+.+.+..+.+ .......+..+.. +....+|.+|...+-+..... ..
T Consensus 234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~---DdqdsVr~~a~~~~~~l~~l~-~~ 309 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR---DDQDSVREAAVESLVSLLDLL-DD 309 (759)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh---cchhhHHHHHHHHHHHHHHhc-CC
Confidence 446677777777666665699999999988653 1233444455554 556899988877666654432 11
Q ss_pred CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
+.+..+.+.+.+++...++++.+|...+.....+...- +...|+++.+.....+++..+..|.+...-...++.....
T Consensus 310 -~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 310 -DDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred -chhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 11667777888888889999999999998888887764 4578999999999999988777777766655655555442
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHH
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (562)
.--.+ ...+.++|.+..+..+.+..||.+............| ....+..+++.+...+++.++.++......
T Consensus 389 ~~~~~------i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ 460 (759)
T KOG0211|consen 389 SCYPN------IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDK 460 (759)
T ss_pred ccccc------cchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHH
Confidence 11111 2346678999999999999999877655444433333 122344556666667788889999988877
Q ss_pred HHHHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhh
Q 008533 245 FNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (562)
Q Consensus 245 L~~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 323 (562)
+..+-.... .-+..+-+..++.+.....+....+|...++++-.++... ..+.+.+ .+.+.+..++..
T Consensus 461 ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~-~~~~~~~---~~~~l~~~~l~d------- 529 (759)
T KOG0211|consen 461 LSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQL-GVEFFDE---KLAELLRTWLPD------- 529 (759)
T ss_pred HHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhh-hhHHhhH---HHHHHHHhhhhh-------
Confidence 744433221 2223444567777777777777888888888888777651 1122222 122222222210
Q ss_pred hhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCC
Q 008533 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASG 402 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 402 (562)
..+.+|.+|...+..++..+|. .....+.+.+.....+++
T Consensus 530 ---------------------------------------~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~ 570 (759)
T KOG0211|consen 530 ---------------------------------------HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDN 570 (759)
T ss_pred ---------------------------------------hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcc
Confidence 1236899999999999999995 334455555555555555
Q ss_pred CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHH
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 482 (562)
|..|.+.+.++..+++.++..+ +...++|.+.....|+.+.||..++..+-.+...+... ... ..+.+
T Consensus 571 ---y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----~~~---~~v~p 638 (759)
T KOG0211|consen 571 ---YLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----VRD---EEVLP 638 (759)
T ss_pred ---cchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----HHH---HHHHH
Confidence 9999999999999999887543 45668999999999999999999999999998876421 223 34444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 483 GLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
.+.....|++..||.+|..+++.+...
T Consensus 639 ll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 639 LLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHH
Confidence 444444588899999999998877654
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.47 E-value=1.5e-11 Score=133.68 Aligned_cols=274 Identities=17% Similarity=0.127 Sum_probs=197.0
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
++.|.+.+.++++.+|..|+..|+.+.. ...++.|...+.|++..||..|+.++..+....+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~ 684 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP 684 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC
Confidence 4678888899999999999999987531 3467788899999999999999999988765332
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
. .+.+...++++++.+|..++..|..+-... ...++..+.|.++.+|..|+..+..+-..
T Consensus 685 ~---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~ 744 (897)
T PRK13800 685 P---------APALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDDV 744 (897)
T ss_pred c---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccCc
Confidence 1 123333456678999999999888753111 11234567899999999998877765221
Q ss_pred ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHH
Q 008533 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (562)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~ 372 (562)
. .+. ..+. | . .+.+|..+.
T Consensus 745 ----~-------~l~----~~l~------------------------------------D-~---------~~~VR~~aa 763 (897)
T PRK13800 745 ----E-------SVA----GAAT------------------------------------D-E---------NREVRIAVA 763 (897)
T ss_pred ----H-------HHH----HHhc------------------------------------C-C---------CHHHHHHHH
Confidence 1 111 1110 0 0 136899998
Q ss_pred HHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHH
Q 008533 373 AALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (562)
Q Consensus 373 ~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~ 452 (562)
.+|..+...-+ ...+.+...+++++ +.+|.+|+.+|+.+...- .+.+.+...+.|+++.||.+
T Consensus 764 ~aL~~~~~~~~-----~~~~~L~~ll~D~d---~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~ 826 (897)
T PRK13800 764 KGLATLGAGGA-----PAGDAVRALTGDPD---PLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQG 826 (897)
T ss_pred HHHHHhccccc-----hhHHHHHHHhcCCC---HHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHH
Confidence 88887754322 23567778888988 999999999999885421 12345777889999999999
Q ss_pred HHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
|+++|+.+.. +..++.|+..|+|++..||..|+.+|+.+ .--+...+.|...+++.
T Consensus 827 Aa~aL~~l~~---------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---------~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 827 AARALAGAAA---------------DVAVPALVEALTDPHLDVRKAAVLALTRW---------PGDPAARDALTTALTDS 882 (897)
T ss_pred HHHHHHhccc---------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHhCC
Confidence 9999987643 13347788888999999999999999986 11245666777888888
Q ss_pred hhhHHHHHHHHHHH
Q 008533 533 QRRNLRIVYDAIGT 546 (562)
Q Consensus 533 ~~~~~~~~~~~l~~ 546 (562)
+..+++.+.++|..
T Consensus 883 d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 883 DADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhh
Confidence 77888888888753
No 44
>PRK09687 putative lyase; Provisional
Probab=99.47 E-value=1.6e-11 Score=113.82 Aligned_cols=253 Identities=17% Similarity=0.126 Sum_probs=176.8
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 008533 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (562)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l 260 (562)
-.+.|...+.+.+..||..|+++|..+-. +.++..+..++.++++.+|..+..+|+.+...... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 35567888899999999999999986542 22344455556788999999999999997542211 2
Q ss_pred HHHHHHHHhh-cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCC
Q 008533 261 RNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (562)
Q Consensus 261 ~~i~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 339 (562)
...++.+... ..++++.||..|+..++.++.....+ ...+++.+...+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~------------------------ 138 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAF------------------------ 138 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhh------------------------
Confidence 3455555544 57889999999999999886541111 1112222211111
Q ss_pred CcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHH
Q 008533 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (562)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i 419 (562)
| ..|.+|..+..+|+.+. + +..++.+...+++++ |.+|..|..+||.+
T Consensus 139 ------------D----------~~~~VR~~a~~aLg~~~----~---~~ai~~L~~~L~d~~---~~VR~~A~~aLg~~ 186 (280)
T PRK09687 139 ------------D----------KSTNVRFAVAFALSVIN----D---EAAIPLLINLLKDPN---GDVRNWAAFALNSN 186 (280)
T ss_pred ------------C----------CCHHHHHHHHHHHhccC----C---HHHHHHHHHHhcCCC---HHHHHHHHHHHhcC
Confidence 0 13578999888885442 2 356788888888888 99999999999998
Q ss_pred hhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHH
Q 008533 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAA 499 (562)
Q Consensus 420 ~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a 499 (562)
..+. +.+++.+...+.|.++.||..|++++|++.. +..++.|++.+++++ ++..+
T Consensus 187 ~~~~--------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a 241 (280)
T PRK09687 187 KYDN--------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLI 241 (280)
T ss_pred CCCC--------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHH
Confidence 3221 2467778888899999999999999998543 356788888888765 67788
Q ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHHh-hhhhhHHHHHHHHHH
Q 008533 500 CSAFATLEEEAAEELAPRLEIILQHLMMAFG-KYQRRNLRIVYDAIG 545 (562)
Q Consensus 500 ~~al~~l~~~~~~~~~~~l~~il~~L~~~l~-~~~~~~~~~~~~~l~ 545 (562)
+.+|+.+-. +..++.|..++. ..+.++.+.+.+++.
T Consensus 242 ~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 242 IEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 888887655 356666666676 455666777777764
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.47 E-value=2.3e-10 Score=117.48 Aligned_cols=472 Identities=14% Similarity=0.099 Sum_probs=276.3
Q ss_pred HHHHHHHHHHHhhc-CC--ChHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHHHHHhhhhhCCc
Q 008533 32 DKSQIWQQLQQYSQ-FP--DFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYKSMS-PSNQQYIKSELLPCLGAAD 106 (562)
Q Consensus 32 ~r~~A~~~L~~~~~-~~--~~~~~l~~il~~~~-~~~~~~R~~a~~~lk~~i~~~w~~l~-~~~~~~i~~~ll~~l~~~~ 106 (562)
+|+++...|..... .| .-...+..++.... +..-+-|..|+.+++.. ...++ +..+..+++..-++..+..
T Consensus 175 vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~----~~~~~~~~vk~elr~~~~~lc~d~~ 250 (759)
T KOG0211|consen 175 VREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKL----YVSLPDDAVKRELRPIVQSLCQDDT 250 (759)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHh----ccCCChHHHHHHHHHHHHhhccccc
Confidence 56666666666332 22 11223333333211 22233344444433332 33344 5677788877777778899
Q ss_pred hHHHHHHHHHHHHHHHhcC-cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHH
Q 008533 107 RHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (562)
Q Consensus 107 ~~vr~~~~~~i~~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (562)
+.||+.++.-++.+++... ...+..+++.+.++..++...+|.+|+..+..+...+.... .....+.+.+
T Consensus 251 ~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~---------d~~~~~~~~l 321 (759)
T KOG0211|consen 251 PMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD---------DVVKSLTESL 321 (759)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch---------hhhhhhhHHH
Confidence 9999999999999998864 46788899999999999888999999999998888766532 2457788999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc--cchhhhHHHH
Q 008533 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFLEPHLRNL 263 (562)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~--~~~~~~l~~i 263 (562)
++...+.++.+|....+.+..+.....+.... ...........++...+.|.++..-...+..... .+..--...+
T Consensus 322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 322 VQAVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred HHHhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 99999999999998888877776544321111 1112233333444445555555444444443322 1111122234
Q ss_pred HHHHHhhcCCCChhHHHHHhhhHHHhhcc---ccchhh-HHhh---hhHHHHHHHhhcccChhhHhhhhhhhccCCCCCC
Q 008533 264 FEYMLQVNKDTDDDVALEACEFWHSYFEA---QLPHEN-LKEF---LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (562)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~a~~~l~~~~~~---~~~~~~-~~~~---l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (562)
+|.+.....+....+|.....+...+... +..... .+.+ +....+.....+.......+... +..+..---
T Consensus 400 lp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~--~v~g~~~~s 477 (759)
T KOG0211|consen 400 LPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN--DVIGISTVS 477 (759)
T ss_pred hHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc--Ccccchhhh
Confidence 55555555666666666555554443221 111000 0000 01111111000000000000000 000000000
Q ss_pred CCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccch-hhhhHHHHHHHHcCCCCCCchhHHHHHHH
Q 008533 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI-LPTLMPVIQAKLSASGDEAWKDREAAVLA 415 (562)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~ 415 (562)
+...|.. .+. .+...|.+|.+..+.+-.++...|..+ -+.+-+++...+.+.. ...|.+|...
T Consensus 478 ~slLp~i--------~el-----~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v---~~Ir~~aa~~ 541 (759)
T KOG0211|consen 478 NSLLPAI--------VEL-----AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHV---YSIREAAARN 541 (759)
T ss_pred hhhhhhh--------hhh-----ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhH---HHHHHHHHHH
Confidence 0000000 000 011279999999999999988888533 3445555566666655 7899999999
Q ss_pred HHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHH
Q 008533 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV 495 (562)
Q Consensus 416 l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v 495 (562)
+..+++..+. .-+...+++.++....+++..+|.+.+.++..+++.++ ..-+.+.+++.+....+|+.+.|
T Consensus 542 l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g-------~ei~~~~Llp~~~~l~~D~vanV 612 (759)
T KOG0211|consen 542 LPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG-------QEITCEDLLPVFLDLVKDPVANV 612 (759)
T ss_pred hHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc-------cHHHHHHHhHHHHHhccCCchhh
Confidence 9999987662 23455678888888888899999999999999999886 35667888999999999999999
Q ss_pred HHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHH
Q 008533 496 QEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLR-IVYDAIGTLAD 549 (562)
Q Consensus 496 r~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~~~~~~~~~-~~~~~l~~l~~ 549 (562)
|..++..|..+.... .+....++-++.+.|.. .++...+ .+..+.+.+..
T Consensus 613 R~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~----d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 613 RINVAKHLPKILKLLDESVRDEEVLPLLETLSS----DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc----CcccchhHHHHHHHHHHHH
Confidence 999999999988766 23333344444333332 3332233 45555554443
No 46
>PRK09687 putative lyase; Provisional
Probab=99.41 E-value=8.5e-11 Score=109.00 Aligned_cols=253 Identities=15% Similarity=0.112 Sum_probs=178.3
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
++.|...+.+++..+|..+...|+.+-. ..+++.+...++++++.+|..|+.+|+.+...-.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~ 86 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG------------------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR 86 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc------------------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc
Confidence 4566777788999999999999875421 4467778888999999999999999999754210
Q ss_pred hhHHhchHHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 213 SALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
. ....++.+..+ ..++++.+|..++.+|+.+....... ....++.+.....|.+..||..+...++.+..
T Consensus 87 ~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 0 12234444443 57888999999999999875433221 23455555566788899999999887765543
Q ss_pred cccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhH
Q 008533 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (562)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (562)
. ..++.++..+.. ..|.+|..|
T Consensus 158 ~------------~ai~~L~~~L~d----------------------------------------------~~~~VR~~A 179 (280)
T PRK09687 158 E------------AAIPLLINLLKD----------------------------------------------PNGDVRNWA 179 (280)
T ss_pred H------------HHHHHHHHHhcC----------------------------------------------CCHHHHHHH
Confidence 2 223333333220 013589999
Q ss_pred HHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHH
Q 008533 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRS 451 (562)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~ 451 (562)
..+|+.+.. + -+.+.+.+...+.+.+ |.+|.+|+.+||.+.. +..+|.+++.+.+++ +|.
T Consensus 180 ~~aLg~~~~--~---~~~~~~~L~~~L~D~~---~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~ 239 (280)
T PRK09687 180 AFALNSNKY--D---NPDIREAFVAMLQDKN---EEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGD 239 (280)
T ss_pred HHHHhcCCC--C---CHHHHHHHHHHhcCCC---hHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHH
Confidence 998888721 1 2366777888888888 9999999999998543 246888888888865 677
Q ss_pred HHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Q 008533 452 ISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (562)
Q Consensus 452 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~vr~~a~~al~~ 505 (562)
.|+.++|++.. +..++.|...++ +++..|+..|..++..
T Consensus 240 ~a~~ALg~ig~---------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 240 LIIEAAGELGD---------------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHhcCC---------------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88888887765 245666777775 6789999999888753
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.41 E-value=4.6e-12 Score=113.19 Aligned_cols=353 Identities=15% Similarity=0.148 Sum_probs=219.9
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhc
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLM 211 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~ 211 (562)
+|.+.+.+.+++......|..-++.++..-.. +-.. ...-..++|.|++++ ..+..-.+-.|.+++.++.+..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~---PPIq---~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETS---PPIQ---PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccC---CCch---hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 47777777777776666666666655543211 1000 112356789999999 4455567778888998887643
Q ss_pred hhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhcCCCC--hhHHHHHhhhH
Q 008533 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTD--DDVALEACEFW 286 (562)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~--~i~~~~~~~~~~~~--~~v~~~a~~~l 286 (562)
...-.-.++ ..++.+++++.+.+.++|.+++++|+.++...+.. +.|.- ..++.++..+.+.. -.+...+-..+
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 321110011 23556666777788899999999999998765432 33322 23333444333333 35566777888
Q ss_pred HHhhcccc---chhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccc
Q 008533 287 HSYFEAQL---PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVN 363 (562)
Q Consensus 287 ~~~~~~~~---~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~ 363 (562)
+.+|+.+. .++.+ .+.+|++...+...+.
T Consensus 226 SNlcRGknP~P~w~~i----sqalpiL~KLiys~D~-------------------------------------------- 257 (526)
T COG5064 226 SNLCRGKNPPPDWSNI----SQALPILAKLIYSRDP-------------------------------------------- 257 (526)
T ss_pred HHhhCCCCCCCchHHH----HHHHHHHHHHHhhcCH--------------------------------------------
Confidence 99998732 23333 3444444332211111
Q ss_pred hhcHhhhHHHHHHHHHhhhcc---chh-hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHH
Q 008533 364 VWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFL 438 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l 438 (562)
.+-..|..++..|+..-.+ .++ ..+.+.+.+.+.+++ .++..-++..+|.|..|....-.-.+. ..++.+
T Consensus 258 --evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~s---a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~ 332 (526)
T COG5064 258 --EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES---AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF 332 (526)
T ss_pred --HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcc---ccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence 1233366667666654322 111 245567888888887 788888999999999886432211111 245556
Q ss_pred hhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc--cccccc
Q 008533 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAP 516 (562)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~~~ 516 (562)
...|.++...+|..|||+|+++...-.+. ...-.-..++|.|++.|......+|..||||+.+....+ ++....
T Consensus 333 ~~lLs~~ke~irKEaCWTiSNITAGnteq----iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 333 RSLLSSPKENIRKEACWTISNITAGNTEQ----IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHhcChhhhhhhhhheeecccccCCHHH----HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHH
Confidence 66688888899999999999997543221 112223467888888888878899999999999998876 333444
Q ss_pred cH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 517 RL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 517 ~l--~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
|+ +.+++.|.+++...+.+.-..+++|+-.+..
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 43 5677888888888777666666777766554
No 48
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.8e-08 Score=101.72 Aligned_cols=410 Identities=15% Similarity=0.184 Sum_probs=263.7
Q ss_pred CCHHHHHHHHHHHHHHHH--HhhccCChhhHHHHHHHHhhhhh-----------CCchHHHH-------------HHHHH
Q 008533 63 KSVEIRQAAGLLLKNNLR--TAYKSMSPSNQQYIKSELLPCLG-----------AADRHIRS-------------TVGTI 116 (562)
Q Consensus 63 ~~~~~R~~a~~~lk~~i~--~~w~~l~~~~~~~i~~~ll~~l~-----------~~~~~vr~-------------~~~~~ 116 (562)
..+.+-..+...+.+.+. ..|+.+-|.....|..-++.++. |+.+.+|+ ++..+
T Consensus 316 ls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~ 395 (1010)
T KOG1991|consen 316 LSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDF 395 (1010)
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHH
Confidence 467777888888888774 46998888888888888888763 23556775 45667
Q ss_pred HHHHHHhcCcCchHHHHHHHHHHhc------cC--ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh-HhhHHHHHH
Q 008533 117 VSVVVQLGGIAGWLELLQALVTCLD------SN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLLQ 187 (562)
Q Consensus 117 i~~i~~~~~~~~w~~ll~~l~~~l~------~~--~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~-~~il~~l~~ 187 (562)
+-.++++-+++..|.+++++.+.++ .+ ++....+|+.+++.+++.+...- .+...+ .-+.+.++.
T Consensus 396 l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s------~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 396 LTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS------PYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC------chHHHHHHHHHHHhhH
Confidence 7777777778899999999999887 22 56788999999999996554320 001112 224455677
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhh-chhhHHhchHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhCc---cchhhhHHH
Q 008533 188 FFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRP---SFLEPHLRN 262 (562)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~~~---~~~~~~l~~ 262 (562)
.++++..-+|..|+..++.+.+. .++ ..++...++...+.+. +.+-.+|..+.-+|..++.+.. +.+++|++.
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~ 547 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP 547 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence 78999999999999999998742 221 1123344444444444 5666888888888888887765 568999999
Q ss_pred HHHHHHhhcCCCChhHHHHHhhh-HHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCc
Q 008533 263 LFEYMLQVNKDTDDDVALEACEF-WHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKP 341 (562)
Q Consensus 263 i~~~~~~~~~~~~~~v~~~a~~~-l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 341 (562)
+++-++...+..+-+.-...++- +..+.+. ..........+|....++.+..++
T Consensus 548 ~mq~lL~L~ne~End~Lt~vme~iV~~fseE--lsPfA~eL~q~La~~F~k~l~~~~----------------------- 602 (1010)
T KOG1991|consen 548 IMQELLKLSNEVENDDLTNVMEKIVCKFSEE--LSPFAVELCQNLAETFLKVLQTSE----------------------- 602 (1010)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHh--hchhHHHHHHHHHHHHHHHHhccC-----------------------
Confidence 99999988777665555555543 3334432 222233334444455555544211
Q ss_pred ccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh---cc------chhhhhHHHHHHHHcCCCCCCchhHHHH
Q 008533 342 RFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GD------EILPTLMPVIQAKLSASGDEAWKDREAA 412 (562)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---~~------~~~~~l~~~l~~~l~~~~~~~~~~r~aa 412 (562)
+ +++.++| -..+|..+|.++.+.+ .+ ++-+.+.|.+.-.+++.- ...-+..
T Consensus 603 ----------~-~~~~~dd------k~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i---~dfyeE~ 662 (1010)
T KOG1991|consen 603 ----------D-EDESDDD------KAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI---TDFYEEL 662 (1010)
T ss_pred ----------C-CCccchH------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHH
Confidence 1 1111111 2345667777766655 22 233445555555555442 2222222
Q ss_pred HHHHHHHhhcc---hhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc
Q 008533 413 VLALGAIAEGC---IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (562)
Q Consensus 413 l~~l~~i~~~~---~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 489 (562)
-.++.++ .+.+++.+-++++.+.+.+.+....--...+-++.++...-.+.. .....|...++..+-+.+.
T Consensus 663 ----~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~--~s~~~y~~il~~i~~~~l~ 736 (1010)
T KOG1991|consen 663 ----LEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSL--LSNPDYLQILLEIIKKVLT 736 (1010)
T ss_pred ----HHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhh--hccchHHHHHHHHHHHHHc
Confidence 2333333 356788899999999999988765555566666666654321110 1235566777777777776
Q ss_pred cCC--HHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhh
Q 008533 490 DTN--KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (562)
Q Consensus 490 d~~--~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~ 531 (562)
+.+ ..=...||..+..++-+|+..+..|++..++..+..+..
T Consensus 737 ~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 737 SENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 643 223456999999999999878888999999988888877
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9.8e-09 Score=102.06 Aligned_cols=409 Identities=14% Similarity=0.126 Sum_probs=222.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhc-CCCh----HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH
Q 008533 21 LEQQISPSSTADKSQIWQQLQQYSQ-FPDF----NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (562)
Q Consensus 21 l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~----~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~ 95 (562)
+....+.|.+ +|+-..-+|-++.. +|+. +.++..-|. +.++-+|-.|...|.-+ .-+.+.+ .+.
T Consensus 77 VKNVaskn~E-VKkLVyvYLlrYAEeqpdLALLSIntfQk~L~---DpN~LiRasALRvlSsI---Rvp~IaP----I~l 145 (968)
T KOG1060|consen 77 VKNVASKNIE-VKKLVYVYLLRYAEEQPDLALLSINTFQKALK---DPNQLIRASALRVLSSI---RVPMIAP----IML 145 (968)
T ss_pred HHHhhccCHH-HHHHHHHHHHHHhhcCCCceeeeHHHHHhhhc---CCcHHHHHHHHHHHHhc---chhhHHH----HHH
Confidence 3333445555 66666666666543 4442 222222232 45566665554333221 0011111 112
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
-.+-++..|+++.||+.+|.+|-++...++ +.-+++...+..++.+.+|.+.-+|+.++..+|-+--+
T Consensus 146 lAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld----------- 213 (968)
T KOG1060|consen 146 LAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD----------- 213 (968)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-----------
Confidence 233345668999999999999999988764 34458999999999999999999999998887764322
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-chhh----------------------------HHhchHHHHHHH
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML-MPSA----------------------------LFVSMDQYLQGL 226 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~-~~~~----------------------------~~~~~~~~l~~l 226 (562)
.+..-+..+++++.+.+.-=+.-.++.|..++.. +++. ..+.+..+++..
T Consensus 214 -LIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st 292 (968)
T KOG1060|consen 214 -LIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST 292 (968)
T ss_pred -HhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence 3455666788888887666666677777666542 1110 011123344544
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHH
Q 008533 227 FLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (562)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l 306 (562)
-.++.+.++.+..+++..+..++... ....|+..+++.+.... +++...+..+..++.. ....+.||+...
T Consensus 293 kpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~--~~~lF~P~lKsF 363 (968)
T KOG1060|consen 293 KPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRSNR-EVQYVVLQNIATISIK--RPTLFEPHLKSF 363 (968)
T ss_pred cHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHhc--chhhhhhhhhce
Confidence 44555666666666666665554332 23345555555544433 3566666666666654 334444444321
Q ss_pred HHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccch
Q 008533 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (562)
Q Consensus 307 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (562)
|++ .. | .......-|..|+......-
T Consensus 364 -------------------------------fv~-----ss----D--------------p~~vk~lKleiLs~La~esn 389 (968)
T KOG1060|consen 364 -------------------------------FVR-----SS----D--------------PTQVKILKLEILSNLANESN 389 (968)
T ss_pred -------------------------------Eee-----cC----C--------------HHHHHHHHHHHHHHHhhhcc
Confidence 111 10 0 01112223344444444444
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
++.+++.++.++.+.+ -..-.+++.++|..+.... ..-+.++..++..+.+.+..|...++.+|-++...-+
T Consensus 390 i~~ILrE~q~YI~s~d---~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p- 461 (968)
T KOG1060|consen 390 ISEILRELQTYIKSSD---RSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP- 461 (968)
T ss_pred HHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh-
Confidence 5677777777777776 4455555666666665433 2234456666666666677777777777776665422
Q ss_pred hcCCCcchhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhH
Q 008533 467 DIGHQNGREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRN 536 (562)
Q Consensus 467 ~~~~~~~~~~~~~il~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~ 536 (562)
..+..++..+.+.+.. ..+.-|....|.++..++.. -...|+++..+.+.+.+..+++
T Consensus 462 --------~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~v----pri~PDVLR~laksFs~E~~ev 520 (968)
T KOG1060|consen 462 --------AEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIV----PRIAPDVLRKLAKSFSDEGDEV 520 (968)
T ss_pred --------HHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhc----chhchHHHHHHHHhhccccchh
Confidence 2223344444444321 12444555566666665542 2234555555555555544443
No 50
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.6e-08 Score=105.61 Aligned_cols=150 Identities=17% Similarity=0.200 Sum_probs=127.2
Q ss_pred HhhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 11 EQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 11 ~~~~~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
.....++...+....+| +++ .|.+|.+.+.+++..|+.+..+..++.. +..+..|++|..+|-+.++..|+.++.
T Consensus 6 ~~l~~~lldavv~~~~~~~s~~-~r~eA~~~l~~lke~~~~~~~~~~iL~~--s~~~~~k~f~Lqlle~vik~~W~~~~~ 82 (1041)
T KOG2020|consen 6 NKLDSELLDAVVVTLNPEGSNE-ERGEAQQILEELKEEPDSWLQVYLILKL--STNPILKYFALQLLENVIKFRWNSLPV 82 (1041)
T ss_pred hhHHHHHHHhHHHHhCcccchH-HHHHHHHHHHHHHhCcchHHHHHHHHhc--cCCchhheeeHHHHHHHHHHhcccCCc
Confidence 34557788888888887 556 9999999999999999998888889986 789999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhh--CC-------chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHh
Q 008533 89 SNQQYIKSELLPCLG--AA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC 159 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~--~~-------~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~ 159 (562)
+.+..+|+.++.... ++ ...++++++.++-.|++.++++.||++++.+.+.... ++..++.++..+..+.
T Consensus 83 ~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLs 161 (1041)
T KOG2020|consen 83 EERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKT-SETVCELSMIILLLLS 161 (1041)
T ss_pred cccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhc-CcccchHHHHHHHHHH
Confidence 999999999888653 11 3457889999999999999999999999999998874 3466777777777777
Q ss_pred hcchh
Q 008533 160 EDIPQ 164 (562)
Q Consensus 160 ~~~~~ 164 (562)
++...
T Consensus 162 Edvf~ 166 (1041)
T KOG2020|consen 162 EEVFD 166 (1041)
T ss_pred HHHhc
Confidence 77654
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.28 E-value=7.2e-10 Score=99.43 Aligned_cols=351 Identities=14% Similarity=0.110 Sum_probs=227.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH-hhccCChhhHHHHHHHHhhhhhC-CchHHHHHHHHHHHHHHHhcCcC----chHHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRT-AYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIA----GWLELLQA 135 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~-~w~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~~----~w~~ll~~ 135 (562)
+.+-+....|..-+|..+.+ +-+.+.+-....+.+++.+++.+ ......--++-++..|+...... --..-+|.
T Consensus 82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl 161 (526)
T COG5064 82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL 161 (526)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence 34556666666777777754 33445555556677788888854 56677778999999999764221 11345788
Q ss_pred HHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCC--HHHHHHHHHHHHHHHhhc-h
Q 008533 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIMLM-P 212 (562)
Q Consensus 136 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~~~-~ 212 (562)
+++++.+++..+|+-++++|+.++.+.+..-+ + ..-...+..++..+.++. ..+-..+-+.+.+++..- |
T Consensus 162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD-~------vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRD-Y------VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred HHHHHcCchHHHHHHHHHHhccccCCchhHHH-H------HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 89999999999999999999999887654211 1 012345667777777654 366778888999988743 3
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
+.-...+...++.+.+++...|+++...+|+++..+.....+.+.-.++ .+..-+++.+.+++..+...|+..++.++.
T Consensus 235 ~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 235 PPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred CCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 3223456667888888888889999999999998887766555433332 122223333333333333333333333222
Q ss_pred cccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhH
Q 008533 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (562)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (562)
. +| +.. .
T Consensus 315 G-----------------------------------------------------------~D------~QT---q----- 321 (526)
T COG5064 315 G-----------------------------------------------------------SD------DQT---Q----- 321 (526)
T ss_pred c-----------------------------------------------------------Cc------cce---e-----
Confidence 1 00 000 0
Q ss_pred HHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChhHH
Q 008533 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIR 450 (562)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~d~~~~vr 450 (562)
.+- .+ .+++.+...++++. -..|+.+++.++.|..|..+.+...++ .++|.++..|...+-.+|
T Consensus 322 --viI----~~------G~L~a~~~lLs~~k---e~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~k 386 (526)
T COG5064 322 --VII----NC------GALKAFRSLLSSPK---ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIK 386 (526)
T ss_pred --hhe----ec------ccHHHHHHHhcChh---hhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 000 01 23455555578877 789999999999999998877765554 478999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 451 SISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
..|||++++....... +| ....|+ +..+..|...|.-.+.++-..+..++.++++..
T Consensus 387 KEACWAisNatsgg~~--~P-D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~G 445 (526)
T COG5064 387 KEACWAISNATSGGLN--RP-DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVG 445 (526)
T ss_pred HHHHHHHHhhhccccC--Cc-hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhh
Confidence 9999999998765332 12 223333 355666666665444445556788888887653
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.25 E-value=1.1e-10 Score=88.18 Aligned_cols=95 Identities=24% Similarity=0.285 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHH
Q 008533 408 DREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKR 487 (562)
Q Consensus 408 ~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 487 (562)
.|.+++.+|++++.+++..+.+|++.++|.++..+.|++++||..||.++.++++..... .-+++.+++..+.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----ILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 589999999999999998899999999999999999999999999999999999998754 467999999999999
Q ss_pred hccCCHHHHHHHHHHHHHHHH
Q 008533 488 ILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 488 l~d~~~~vr~~a~~al~~l~~ 508 (562)
+.|+++.||..| ..|.++++
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HcCCchhHHHHH-HHHHHHhc
Confidence 999999999855 66666653
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.1e-07 Score=93.88 Aligned_cols=190 Identities=14% Similarity=0.208 Sum_probs=133.6
Q ss_pred CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
++++....+-+-++.+|+++.+.+|+.+..++..++..+ ++..-.-+|.|.+-+.++||.++.+|..++..+++.-+..
T Consensus 137 vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 566777788888999999999999999999999988765 4555667899999999999999999999999999887754
Q ss_pred ccccCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhchh-------------------------------
Q 008533 166 LDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS------------------------------- 213 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~------------------------------- 213 (562)
+. .+-|.|++.|.+. +--+-...++.|+.+...-|.
T Consensus 216 yL------------~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 216 YL------------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVA 283 (877)
T ss_pred cc------------cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHhee
Confidence 32 2444555555432 122333334444433332221
Q ss_pred -----hHHhc---hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhh
Q 008533 214 -----ALFVS---MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (562)
Q Consensus 214 -----~~~~~---~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~ 285 (562)
.+.++ +..-++.+-.++.+.|+.++.-.+-++..++..++..+..|-+ ++++++.|.|+.+|..|++.
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHH
Confidence 00011 1112333444556777888888888888888888887755543 45678999999999999999
Q ss_pred HHHhhcc
Q 008533 286 WHSYFEA 292 (562)
Q Consensus 286 l~~~~~~ 292 (562)
+..++..
T Consensus 360 l~gmVsk 366 (877)
T KOG1059|consen 360 LYGMVSK 366 (877)
T ss_pred HHHHhhh
Confidence 9998875
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6.4e-07 Score=89.88 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=128.1
Q ss_pred CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
.+++....+-+.+-+.++..++.||++|+.|...+.... ++.-.-+++...+.+.+.+.-+..+++..+..+|+.-++.
T Consensus 135 ~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 355666666677777888889999999999999888875 3344556666777777777778888888888888876654
Q ss_pred ccccCCCCCcchhHhhHHHHHHhhcC---------------CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhh--
Q 008533 166 LDSDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL-- 228 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~-- 228 (562)
+. ....+.+.|+..+.+ ++|-++...++.+.-+....++ ..+.|..++..+..
T Consensus 214 l~---------~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d-aSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 214 LS---------YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD-ASDLMNDILAQVATNT 283 (866)
T ss_pred HH---------HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHhcc
Confidence 32 233455555554432 3677888888888877765432 11222222222221
Q ss_pred -----------------hc-cCCCHHHHHHHHHHHHHHHhhCccchhhh----------------HHHHHHHHHhhcCCC
Q 008533 229 -----------------LS-NDPSAEVRKLVCAAFNLLIEVRPSFLEPH----------------LRNLFEYMLQVNKDT 274 (562)
Q Consensus 229 -----------------~~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~----------------l~~i~~~~~~~~~~~ 274 (562)
.. -.++..+|..+..+|+++..+....+ .| .+.--..++.+++|.
T Consensus 284 dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Ni-rYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp 362 (866)
T KOG1062|consen 284 DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNI-RYVALNMLLRVVQQDPTAVQRHRSTILECLKDP 362 (866)
T ss_pred cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccce-eeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC
Confidence 11 13456788888888888876543332 11 112223466789999
Q ss_pred ChhHHHHHhhhHHHhhcc
Q 008533 275 DDDVALEACEFWHSYFEA 292 (562)
Q Consensus 275 ~~~v~~~a~~~l~~~~~~ 292 (562)
|..++..|+|....+...
T Consensus 363 D~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 363 DVSIKRRALELSYALVNE 380 (866)
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 999999999999998875
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.17 E-value=7.4e-09 Score=107.45 Aligned_cols=295 Identities=16% Similarity=0.193 Sum_probs=199.8
Q ss_pred HHHHHHHHhcc-CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 132 LLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 132 ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
+++.+..++++ ...+.+..|+..|..+......+ ..+..++|.++.++.|+...||..|+.++..+...
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~ 492 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----------VKLDRVLPYFVHLLMDSEADVRATALETLTELLAL 492 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 45666677765 34677888999998888776653 35788999999999999999999999999887764
Q ss_pred c---hhhHHh-chHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh-cCCCChhHHHHHhh
Q 008533 211 M---PSALFV-SMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV-NKDTDDDVALEACE 284 (562)
Q Consensus 211 ~---~~~~~~-~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~v~~~a~~ 284 (562)
. |..-.. +.+.+++.+-.++.+ ....+|.....+|..++...+.++.- ...+- ... ..+.+.+
T Consensus 493 Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~-~q~~~---~~g~~n~~nse------- 561 (1431)
T KOG1240|consen 493 VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLEL-TQELR---QAGMLNDPNSE------- 561 (1431)
T ss_pred ccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHH-HHHHH---hcccccCcccc-------
Confidence 3 221111 223456777777776 45678888899999999887666421 11110 011 1122211
Q ss_pred hHHHhhcc--ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 008533 285 FWHSYFEA--QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (562)
Q Consensus 285 ~l~~~~~~--~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~ 362 (562)
+..+. ....+.+...+...+..++ . |.
T Consensus 562 ---t~~~~~~~~~~~~L~~~V~~~v~sLl---s------------------------------------d~--------- 590 (1431)
T KOG1240|consen 562 ---TAPEQNYNTELQALHHTVEQMVSSLL---S------------------------------------DS--------- 590 (1431)
T ss_pred ---cccccccchHHHHHHHHHHHHHHHHH---c------------------------------------CC---------
Confidence 11111 0011112222222222221 1 00
Q ss_pred chhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhh
Q 008533 363 NVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPL 441 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~ 441 (562)
...+|++-.+.+..|+..+|. ..-..+++++..+|++.| |+.|-+-+-.+.-++-..+.. ..-+-++|.+...
T Consensus 591 -~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 591 -PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKD---WRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQG 664 (1431)
T ss_pred -chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCcc---HHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHh
Confidence 124788888999999999987 455678899999999999 999988766555444333211 1123368999999
Q ss_pred cCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
|.|..+.|...|+.++..+++.- -..+.++-+++..+...|-.+|.-||..++..|.......
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~------ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLG------LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhc------ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999852 1357888889999999999999999999999999888764
No 56
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-07 Score=95.14 Aligned_cols=423 Identities=15% Similarity=0.126 Sum_probs=235.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCCh-HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDF-NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~-~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
-+-..+......|-+ .++-...+|..+.. .|+- ....-.++.+-.+.++.+|..|...+...= .+...++
T Consensus 50 lF~dvvk~~~T~dle-lKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------v~~i~ey 121 (734)
T KOG1061|consen 50 LFPDVVKCMQTRDLE-LKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------VDKITEY 121 (734)
T ss_pred hhHHHHhhcccCCch-HHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-------ehHHHHH
Confidence 344555555556666 77778888877654 5653 233333444334667888887765333210 1234456
Q ss_pred HHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC
Q 008533 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (562)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 172 (562)
+-..+..++.+.++.+|+.++.+++.+...++. ..-..+++.|..++.+++|.+...|+.+|..|.+..+.....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~---- 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL---- 197 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc----
Confidence 677888899999999999999999999887643 344678888999999999999999999999999887642111
Q ss_pred CCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 173 LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
.....++..++..++.-+.--+...++++.. +.|..- .....+++.+...+++.++.+...+.+.+...+...
T Consensus 198 ---~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~---y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 198 ---ELNPQLINKLLEALNECTEWGQIFILDCLAE---YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred ---cccHHHHHHHHHHHHHhhhhhHHHHHHHHHh---cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 1234444445555554343444444444444 444322 234456777777777767766666777776666655
Q ss_pred ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc-cc---------chhhHHhhhhHHH--HHHHhhcccChhh
Q 008533 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QL---------PHENLKEFLPRLV--PVLLSNMIYADDD 320 (562)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~---------~~~~~~~~l~~l~--~~l~~~l~~~~~~ 320 (562)
.......++.+-+-++..+.... ++...++.-+.-+... +. ..++..|+.-++. .++.. +. .++.
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~-la-~~~n 347 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIE-LA-NDAN 347 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHH-Hh-hHhH
Confidence 44333344444444444443333 4444444433332222 00 0000111100000 00000 00 0000
Q ss_pred Hhh-hhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc
Q 008533 321 ESL-VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (562)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (562)
+.. ..+-.+ |. - +.| -.+-+.+..+++.++-...+. ...++.+.+.++
T Consensus 348 l~qvl~El~e--------Ya------------t---evD------~~fvrkaIraig~~aik~e~~--~~cv~~lLell~ 396 (734)
T KOG1061|consen 348 LAQVLAELKE--------YA------------T---EVD------VDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLE 396 (734)
T ss_pred HHHHHHHHHH--------hh------------h---hhC------HHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHh
Confidence 000 000000 00 0 000 123455778888887776554 344555555555
Q ss_pred CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH
Q 008533 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (562)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (562)
-.. -.+...++..+..+...++.. .+.+++.+...+.. .+|..|.+..|.+|++++.+++ ..
T Consensus 397 ~~~---~yvvqE~~vvi~dilRkyP~~----~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~----------a~ 459 (734)
T KOG1061|consen 397 TKV---DYVVQEAIVVIRDILRKYPNK----YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN----------AL 459 (734)
T ss_pred hcc---cceeeehhHHHHhhhhcCCCc----hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc----------HH
Confidence 222 122333444445555444322 24455555555543 5789999999999999998753 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 479 KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 479 ~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
.+++.+++.+.|....||..-..+..+++-
T Consensus 460 elL~~f~en~~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 460 ELLESFLENFKDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence 677778888888778888776666665543
No 57
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.14 E-value=3.5e-07 Score=92.94 Aligned_cols=370 Identities=14% Similarity=0.097 Sum_probs=226.5
Q ss_pred CCCCHHHHHHHHHHHHHhhc--C-----CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 008533 26 SPSSTADKSQIWQQLQQYSQ--F-----PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSEL 98 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~--~-----~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~l 98 (562)
+.+.+ .-..+...|..+-. . |++...+...|. ..++.+|.+++..+++.+.+.=.....-....+...+
T Consensus 49 ~~~~e-~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~---h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 49 TSNRE-QVELICDILKRLLSALSPDSLLPQYQPFLQRGLT---HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred hcChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 44445 55666666776432 2 344555555565 6789999999999888775431111111123456678
Q ss_pred hhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH-----HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCC
Q 008533 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (562)
Q Consensus 99 l~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l-----l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~ 173 (562)
+.++.+++..|.+.++.++..+++.. .....+ ++.|.+.+..++..+|...+.++..++...+..+..-
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~---- 198 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV---- 198 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 88999999999999999999999864 222333 7788888877677889899999999988766654310
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccCC--CH---H-HHHHHHHHH
Q 008533 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDP--SA---E-VRKLVCAAF 245 (562)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~--~~---~-~~~~~~~~L 245 (562)
.-..+++.++..+.+.|.-++..+++++..++.. +.. ..++. .+++.+...+.+. |+ . .--..+..+
T Consensus 199 ---~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 199 ---VNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred ---HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 1134899999999998889999999999999883 321 11111 2344444443321 22 1 223344666
Q ss_pred HHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhH----HhhhhHHHHHHHhhcccChhhH
Q 008533 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL----KEFLPRLVPVLLSNMIYADDDE 321 (562)
Q Consensus 246 ~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~----~~~l~~l~~~l~~~l~~~~~~~ 321 (562)
+.++...+..+....+.++..+.....+.|...+..|++.|+.++........+ .+.+..++..+.........+
T Consensus 274 g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~- 352 (503)
T PF10508_consen 274 GNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE- 352 (503)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH-
Confidence 677766665555666777777777788889999999999999998763222222 122223333322222211111
Q ss_pred hhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHH-------------------HHhhh
Q 008533 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV-------------------LSNVF 382 (562)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~-------------------l~~~~ 382 (562)
+|..+..++.. ....+
T Consensus 353 ---------------------------------------------lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 353 ---------------------------------------------LKLRALHALASILTSGTDRQDNDILSITESWYESL 387 (503)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 22222222222 22233
Q ss_pred ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch--hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~--~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
++.-.. ..+...++.+= +..|.+++..+..++...- ..+ -..+.++.+++..-.+.+...+.+=..++..+
T Consensus 388 ~~~~~~---~~l~~~~~qPF---~elr~a~~~~l~~l~~~~Wg~~~i-~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l 460 (503)
T PF10508_consen 388 SGSPLS---NLLMSLLKQPF---PELRCAAYRLLQALAAQPWGQREI-CSSPGFIEYLLDRSTETTKEGKEAKYDIIKAL 460 (503)
T ss_pred cCCchH---HHHHHHhcCCc---hHHHHHHHHHHHHHhcCHHHHHHH-HhCccHHhhhcCCCCCCCHHHHHHHHHHHHHH
Confidence 322111 15556666665 6899999999999887541 111 12234566666666666776666665666666
Q ss_pred HHH
Q 008533 461 SKF 463 (562)
Q Consensus 461 ~~~ 463 (562)
.+.
T Consensus 461 ~~~ 463 (503)
T PF10508_consen 461 AKS 463 (503)
T ss_pred Hhc
Confidence 543
No 58
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.1e-07 Score=94.17 Aligned_cols=346 Identities=16% Similarity=0.133 Sum_probs=214.0
Q ss_pred hhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhccc
Q 008533 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
+..+.+.+.|+..+++.+..||..+|+.++.++...+++--.+.+..++.+++-. ++...++|+.+|+.+...
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r------ 410 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR------ 410 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc------
Confidence 4566888889999999999999999999999999987555567777777765543 467888999999998774
Q ss_pred ccCCCCC-cchhHhhHHHHHHhhcC--------CCHHHHHHHHHHHHHHHh-hchhhHHhchHHHHHHHhh-hccCCCHH
Q 008533 168 SDVPGLA-ECPINIFLPRLLQFFQS--------PHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFL-LSNDPSAE 236 (562)
Q Consensus 168 ~~~~~~~-~~~~~~il~~l~~~l~~--------~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~-~~~~~~~~ 236 (562)
|++ -..+..++|.+++.+.= ....||.+|+-....+.. +.|..+.+.+..+...++. .+-|++-.
T Consensus 411 ----GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevn 486 (1133)
T KOG1943|consen 411 ----GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVN 486 (1133)
T ss_pred ----CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhh
Confidence 221 23567889998888852 245799999887777766 4556666655555655443 44577889
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh-cc
Q 008533 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN-MI 315 (562)
Q Consensus 237 ~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-l~ 315 (562)
.|+++..+|-+.+...+.+ ||--+++...-. -.-..|..+ +..++.. ......|...++..++.. ++
T Consensus 487 cRRAAsAAlqE~VGR~~n~--p~Gi~Lis~~dy----~sV~~rsNc---y~~l~~~---ia~~~~y~~~~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNF--PHGISLISTIDY----FSVTNRSNC---YLDLCVS---IAEFSGYREPVFNHLLTKKVC 554 (1133)
T ss_pred HhHHHHHHHHHHhccCCCC--CCchhhhhhcch----hhhhhhhhH---HHHHhHH---HHhhhhHHHHHHHHHHhcccc
Confidence 9999999999988776554 333333321100 000112222 2333321 122334455556665432 33
Q ss_pred cChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHH
Q 008533 316 YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ 395 (562)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~ 395 (562)
..+ -.+|..++.+|..|+...++......+|-+.
T Consensus 555 HWd----------------------------------------------~~irelaa~aL~~Ls~~~pk~~a~~~L~~ll 588 (1133)
T KOG1943|consen 555 HWD----------------------------------------------VKIRELAAYALHKLSLTEPKYLADYVLPPLL 588 (1133)
T ss_pred ccc----------------------------------------------HHHHHHHHHHHHHHHHhhHHhhcccchhhhh
Confidence 211 0367788999999998887765545555555
Q ss_pred HHHcCCCCCCchhHHHHHHHHHHHhhcchhh--hhh-h-------HHHHHHHHhhhcCCCC--hhHHHHHHHHHHHhHHH
Q 008533 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKG--LYP-H-------LSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKF 463 (562)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~--~~~-~-------l~~~~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~ 463 (562)
...-+.+ ...|++...+.|.++.++..- +.. . +.++++.+...-.+.. ...|.+.+..+.++...
T Consensus 589 d~~ls~~---~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s 665 (1133)
T KOG1943|consen 589 DSTLSKD---ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS 665 (1133)
T ss_pred hhhcCCC---hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc
Confidence 5555556 899999999999888765321 111 1 1112222222222222 46777777777766653
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
-... .+....+.+..++ .+.+.+++ .+|..|.++++.++...
T Consensus 666 ~~~~-~~~~v~e~~~~ll---~~~l~~~n-~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 666 KDRL-FQDFVIENWQMLL---AQNLTLPN-QIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred cchh-HHHHHHHHHHHHH---HHhhcchH-HHHHHHHHHHHHHHHHH
Confidence 2211 0001122223333 33334555 78999999999998754
No 59
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.09 E-value=6.2e-10 Score=81.99 Aligned_cols=67 Identities=36% Similarity=0.526 Sum_probs=62.2
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc--------cCChhhHHHHHHHHhhhhh
Q 008533 36 IWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--------SMSPSNQQYIKSELLPCLG 103 (562)
Q Consensus 36 A~~~L~~~~~~-~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~--------~l~~~~~~~i~~~ll~~l~ 103 (562)
|+++|+++..+ |+|+..|+.++.+ .+.+..+|++|+++|||.|.++|. .++++.|..||+.+++.|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~-~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSS-NSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999988 9999999999976 367999999999999999999999 8999999999999998774
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.7e-07 Score=91.57 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=190.6
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
.+.|.+-+++++.-++-.|+.+++.++.. + ....+.|.+...++..++.+|+.|+-|...++.-.|
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s~---E-----------mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICSP---E-----------MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCCH---H-----------HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 34455555566666777788888877652 2 357789999999999999999999999999998776
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH----hhcC-----------CCChh
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML----QVNK-----------DTDDD 277 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~----~~~~-----------~~~~~ 277 (562)
+... .+++...+++.+.+..+..+.+..+..+++..++.+ .|+..+.+-++ +... -.++-
T Consensus 175 ~l~e----~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 175 DLVE----HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL-SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hHHH----HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 5333 334555555666778888888888888888866654 33333433333 2211 13455
Q ss_pred HHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCC
Q 008533 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDD 357 (562)
Q Consensus 278 v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 357 (562)
+....+.++.-+..... .....+..++..+... +|..
T Consensus 250 LQi~iLrlLriLGq~d~---daSd~M~DiLaqvatn---tdss------------------------------------- 286 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDA---DASDLMNDILAQVATN---TDSS------------------------------------- 286 (866)
T ss_pred HHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHHhc---cccc-------------------------------------
Confidence 66667777776665411 1112222222222111 0000
Q ss_pred CccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHH
Q 008533 358 DDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVA 436 (562)
Q Consensus 358 ~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~ 436 (562)
......+ --+|+..+....++ ......++.+.+.+.+.+ -..|+.|+..|..+...-...+..+ =.
T Consensus 287 ---kN~GnAI---LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~NirYvaLn~L~r~V~~d~~avqrH----r~ 353 (866)
T KOG1062|consen 287 ---KNAGNAI---LYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---NNIRYVALNMLLRVVQQDPTAVQRH----RS 353 (866)
T ss_pred ---ccchhHH---HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---cceeeeehhhHHhhhcCCcHHHHHH----HH
Confidence 0000011 12334444433333 333445566777777777 7788888888888877655443333 23
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccc
Q 008533 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (562)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (562)
.|+.+|+|+++.+|..|+...-.+.. ...+..++..++..|...+..++...+.-+..+++...+.=.+
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn-----------~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W 422 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVN-----------ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRW 422 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57788999999999999887665554 5567788888888887777888888888888888776544444
Q ss_pred cHHHHHH
Q 008533 517 RLEIILQ 523 (562)
Q Consensus 517 ~l~~il~ 523 (562)
|++.++.
T Consensus 423 ~idtml~ 429 (866)
T KOG1062|consen 423 HIDTMLK 429 (866)
T ss_pred HHHHHHH
Confidence 5544433
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=3.1e-06 Score=88.94 Aligned_cols=389 Identities=15% Similarity=0.086 Sum_probs=238.2
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCCh--------hhHHHHHHHHhhhhhCC------chHHHHHHHHHH
Q 008533 52 YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP--------SNQQYIKSELLPCLGAA------DRHIRSTVGTIV 117 (562)
Q Consensus 52 ~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~--------~~~~~i~~~ll~~l~~~------~~~vr~~~~~~i 117 (562)
.+..++...-.+.+..|...+..|+..+..+-+.-.. ..-....+.+++....+ ....|.....++
T Consensus 518 ~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i 597 (1176)
T KOG1248|consen 518 DLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEII 597 (1176)
T ss_pred HHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHH
Confidence 3444444333455688888888888777665322111 11122334444444432 123344444444
Q ss_pred H-HHHHhcCcCchHHHHHHHHHHhccCChh-HHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHH
Q 008533 118 S-VVVQLGGIAGWLELLQALVTCLDSNDIN-HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTS 195 (562)
Q Consensus 118 ~-~i~~~~~~~~w~~ll~~l~~~l~~~~~~-~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 195 (562)
. ......+.+.-..+...+.....+.+.. .....+..|..++...+.. . +..+..++...-..-++.+..
T Consensus 598 ~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~-~-------e~~vs~l~~v~~~~e~~~~~~ 669 (1176)
T KOG1248|consen 598 RVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQ-T-------ESQVSKLFTVDPEFENSSSTK 669 (1176)
T ss_pred HHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccc-c-------chhHHHHHHhhHHhhccccHH
Confidence 4 3333333333344444444444443211 1112222232222222211 1 123455552222233445789
Q ss_pred HHHHHHHHHHHHHhhch--hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC
Q 008533 196 LRKLSLGSVNQFIMLMP--SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (562)
Q Consensus 196 vr~~al~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~ 273 (562)
+++.+.+.|..+....+ .....++..+.+.+....++.....+...+.+|..+.+..+......+...++-++-..++
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke 749 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKE 749 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccc
Confidence 99999999999988722 2334566777888888777777888999999999999988843334444444333333488
Q ss_pred CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCC
Q 008533 274 TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSEN 353 (562)
Q Consensus 274 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 353 (562)
.+...|..++++|..++.. ..++ ++
T Consensus 750 ~n~~aR~~Af~lL~~i~~i-------~~~~------------------------------------------------d~ 774 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAI-------QSSL------------------------------------------------DD 774 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHH-------Hhhh------------------------------------------------cc
Confidence 8888999999998888742 0000 00
Q ss_pred CCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHH
Q 008533 354 PEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLS 432 (562)
Q Consensus 354 ~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~ 432 (562)
.+ + . ....+..+++.+...+..+. .+.+...+.+++.+.......+ ..+++
T Consensus 775 g~----e------~---------------~~~~lnefl~~Isagl~gd~---~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 775 GN----E------P---------------ASAILNEFLSIISAGLVGDS---TRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred cc----c------c---------------hHHHHHHHHHHHHhhhcccH---HHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 00 0 0 01112233444444444333 4555555778887776665544 47889
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~- 511 (562)
+++..+...+....+.|+.+|+..+..++..++.. ...++.+.+|+.++...+|..-.+|..+-..|..+++.++
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~----~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE----CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH----HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999988875 4788999999999999888888999999999999999884
Q ss_pred ccccccHHHHHHHHHHHHhhhhhh
Q 008533 512 EELAPRLEIILQHLMMAFGKYQRR 535 (562)
Q Consensus 512 ~~~~~~l~~il~~L~~~l~~~~~~ 535 (562)
+.+.+++|.....++.-+.....+
T Consensus 903 ~eLe~~~pee~~klL~nIRK~r~R 926 (1176)
T KOG1248|consen 903 EELESFLPEEDMKLLTNIRKRRRR 926 (1176)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHH
Confidence 578888887766666666655443
No 62
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.1e-05 Score=82.82 Aligned_cols=373 Identities=16% Similarity=0.165 Sum_probs=232.2
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc-ccCCCCCcchhHhhHHHHHHhhcCCCH------HHHHHH
Q 008533 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD-SDVPGLAECPINIFLPRLLQFFQSPHT------SLRKLS 200 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~l~~~~~------~vr~~a 200 (562)
.++++.+.+...+.-. +..|...+..|..+++...+.-. .+-..........++|.+++....+.. ..|...
T Consensus 515 sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~ 593 (1176)
T KOG1248|consen 515 SFTDLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTV 593 (1176)
T ss_pred HHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHH
Confidence 4677777777766543 47777777778777776421100 000011124567789999998876433 344555
Q ss_pred HHHHH-HHHhhchhhHHhchHHHHHHHhhhccCCCHHHH----HHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCC
Q 008533 201 LGSVN-QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVR----KLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (562)
Q Consensus 201 l~~l~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~ 275 (562)
+.... .++...|..+... +.+.+.....+.++.++ ...+..+..++...++ .+...++.+.-...+...
T Consensus 594 L~~i~~~~~~~t~~dv~~~---l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e---~~vs~l~~v~~~~e~~~~ 667 (1176)
T KOG1248|consen 594 LEIIRVDYFTVTPTDVVGS---LKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE---SQVSKLFTVDPEFENSSS 667 (1176)
T ss_pred HHHHHHHHhhcccHHHHHH---HHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc---hhHHHHHHhhHHhhcccc
Confidence 55444 4444444333322 23333333444433333 2233444444443332 223333322223334456
Q ss_pred hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC
Q 008533 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (562)
Q Consensus 276 ~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (562)
..++..+.++|..++..+.........+..+.+.+...++.+.
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~------------------------------------- 710 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS------------------------------------- 710 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc-------------------------------------
Confidence 7799999999999988754455555666666666654433211
Q ss_pred CCCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHh---hcch---hh
Q 008533 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIA---EGCI---KG 426 (562)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~---~~~~---~~ 426 (562)
...+.....++..|....+. ..++..++.+.=.+++.+ -..|..|.-+|-.++ .... +.
T Consensus 711 ---------~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n---~~aR~~Af~lL~~i~~i~~~~d~g~e~ 778 (1176)
T KOG1248|consen 711 ---------SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVN---VKARRNAFALLVFIGAIQSSLDDGNEP 778 (1176)
T ss_pred ---------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccccc---HHHHhhHHHHHHHHHHHHhhhcccccc
Confidence 13466677888888888874 333444444333335545 555666555555444 2111 11
Q ss_pred hhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 427 LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 427 ~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
....++.+++.|...+-.+.++++...+.+++.+....... ...++++.++..+...|...++.++..|...+..+
T Consensus 779 ~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~----ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvl 854 (1176)
T KOG1248|consen 779 ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI----LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVL 854 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23367777888888877777888777777777777665543 46788999999999999999999999999999999
Q ss_pred HHHccc-cccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 507 EEEAAE-ELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 507 ~~~~~~-~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+...++ .+.++++.++..++..+.+...+.+..+--.+-.+++..|.+..++|+
T Consensus 855 v~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~ 909 (1176)
T KOG1248|consen 855 VYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFL 909 (1176)
T ss_pred HHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhC
Confidence 998854 788999999999999888766666666777777788888877777665
No 63
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=8.1e-06 Score=81.93 Aligned_cols=416 Identities=12% Similarity=0.130 Sum_probs=253.4
Q ss_pred CCCCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 6 AWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 6 ~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~-~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
.|..+.-..++|.++|. |.... .+..|-+.+-. +.+..+.-.+.-.+..+-.+++.++|.+-=+.|-++....-+
T Consensus 29 ~f~sd~~~~~dL~~lLd---Snkd~-~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd 104 (968)
T KOG1060|consen 29 TFLSDNIRHDDLKQLLD---SNKDS-LKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD 104 (968)
T ss_pred eeecCCCChHHHHHHHh---ccccH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC
Confidence 34444455677777777 33333 45556555544 444444333333344433477899999888777766544211
Q ss_pred --cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcc
Q 008533 85 --SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (562)
Q Consensus 85 --~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 162 (562)
-++ .+.+-+.|.|+++.+|..|..+++.|=. +-.-|-++-.+.++..+.++.+|..|..++-.+-..-
T Consensus 105 LALLS-------IntfQk~L~DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 105 LALLS-------INTFQKALKDPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred ceeee-------HHHHHhhhcCCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 011 1345568999999999988888877643 2344667778889999999999999998887775543
Q ss_pred hhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHH
Q 008533 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (562)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 242 (562)
+. .-.++...+-.+|.|.++-|--.|+-+|..++ |+.+ +.+..-...+++++.+-++-=+.-++
T Consensus 175 ~e------------~k~qL~e~I~~LLaD~splVvgsAv~AF~evC---Perl-dLIHknyrklC~ll~dvdeWgQvvlI 238 (968)
T KOG1060|consen 175 PE------------QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC---PERL-DLIHKNYRKLCRLLPDVDEWGQVVLI 238 (968)
T ss_pred hh------------hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc---hhHH-HHhhHHHHHHHhhccchhhhhHHHHH
Confidence 32 22467778888999999999888888887765 3222 12333345566666554444445556
Q ss_pred HHHHHHHhhC-cc----------------------------chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccc
Q 008533 243 AAFNLLIEVR-PS----------------------------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (562)
Q Consensus 243 ~~L~~l~~~~-~~----------------------------~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 293 (562)
..|...+... ++ ...+.++.+++-+--++++..+.|...+......++-.
T Consensus 239 ~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~- 317 (968)
T KOG1060|consen 239 NMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK- 317 (968)
T ss_pred HHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-
Confidence 6666665432 00 00111223333333345566666666666655555532
Q ss_pred cchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHH
Q 008533 294 LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAA 373 (562)
Q Consensus 294 ~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~ 373 (562)
.. ...++..+++.|.... .++....+
T Consensus 318 ---~~----~~~i~kaLvrLLrs~~-----------------------------------------------~vqyvvL~ 343 (968)
T KOG1060|consen 318 ---NQ----VTKIAKALVRLLRSNR-----------------------------------------------EVQYVVLQ 343 (968)
T ss_pred ---HH----HHHHHHHHHHHHhcCC-----------------------------------------------cchhhhHH
Confidence 11 2233444444443211 12334455
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHH
Q 008533 374 ALDVLSNVFGDEILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (562)
Q Consensus 374 ~l~~l~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~ 452 (562)
.+..++...+. .+.|++...+- +.|. ..++.--+..|..++... .+..+++-+.....+++..+..+
T Consensus 344 nIa~~s~~~~~----lF~P~lKsFfv~ssDp--~~vk~lKleiLs~La~es------ni~~ILrE~q~YI~s~d~~faa~ 411 (968)
T KOG1060|consen 344 NIATISIKRPT----LFEPHLKSFFVRSSDP--TQVKILKLEILSNLANES------NISEILRELQTYIKSSDRSFAAA 411 (968)
T ss_pred HHHHHHhcchh----hhhhhhhceEeecCCH--HHHHHHHHHHHHHHhhhc------cHHHHHHHHHHHHhcCchhHHHH
Confidence 56666554442 34466665433 3331 455555666777777633 35667777777788877789999
Q ss_pred HHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhh
Q 008533 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (562)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~ 531 (562)
|+.+||+.+.... ..-+..|..|+..+.+.+..|-..++..|..++..-+.. -..++..|.++++.
T Consensus 412 aV~AiGrCA~~~~---------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~----h~~ii~~La~lldt 477 (968)
T KOG1060|consen 412 AVKAIGRCASRIG---------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE----HLEILFQLARLLDT 477 (968)
T ss_pred HHHHHHHHHHhhC---------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH----HHHHHHHHHHHhhh
Confidence 9999999998753 445688899999888888889899999999998764321 12345555555543
No 64
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-05 Score=83.46 Aligned_cols=435 Identities=12% Similarity=0.101 Sum_probs=251.7
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhC-CchHHHHHHHHHHHHHHHhc--CcCchHHH
Q 008533 56 ILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLG--GIAGWLEL 132 (562)
Q Consensus 56 il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~--~~~~w~~l 132 (562)
++....+.+..+|-.||..+++...+ ++.+...++...++..+.. +++..=+.++.++|.++... .+...+++
T Consensus 346 Lls~l~d~dt~VrWSaAKg~grvt~r----lp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 346 LLSALSDTDTVVRWSAAKGLGRVTSR----LPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred HHHhccCCcchhhHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33333478999999999998887665 5556666666666765543 23555569999999999875 56778899
Q ss_pred HHHHHHHhccC--------ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHH-HHhhcCCCHHHHHHHHHH
Q 008533 133 LQALVTCLDSN--------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL-LQFFQSPHTSLRKLSLGS 203 (562)
Q Consensus 133 l~~l~~~l~~~--------~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l-~~~l~~~~~~vr~~al~~ 203 (562)
+|.+.+.+.=+ ...+|.+|..++-.+.+.+.+..- ++++..+.+.+ ...+=|....+|.+|.-+
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l-------~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL-------KPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh-------hHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 99998877522 347899999988888887765321 23344444443 445567888999999998
Q ss_pred HHHHHhhc---hh--h--------------------------HHhchHHHHHHHhhh-ccCCCHHHHHHHHHHHHHHHhh
Q 008533 204 VNQFIMLM---PS--A--------------------------LFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 204 l~~~~~~~---~~--~--------------------------~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
+...+... |. . +..+...+++.++.. ..+-|..+|..+..+|..+...
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 88776531 10 0 001122345555443 5577899999999999999999
Q ss_pred Cccchhh-hHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhcc
Q 008533 252 RPSFLEP-HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDE 330 (562)
Q Consensus 252 ~~~~~~~-~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~ 330 (562)
.|+.+.. +++.+++.++ ..+...|....-..+.+.-. ...+.+.+..+...-+..+.
T Consensus 575 ~pk~~a~~~L~~lld~~l----s~~~~~r~g~~la~~ev~~~---~~~l~~~~~~l~e~~i~~l~--------------- 632 (1133)
T KOG1943|consen 575 EPKYLADYVLPPLLDSTL----SKDASMRHGVFLAAGEVIGA---LRKLEPVIKGLDENRIAGLL--------------- 632 (1133)
T ss_pred hHHhhcccchhhhhhhhc----CCChHHhhhhHHHHHHHHHH---hhhhhhhhhhhHHHHhhhhh---------------
Confidence 8888763 4555555433 33444444433333332221 01111111111111111100
Q ss_pred CCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcCCCCCCc
Q 008533 331 SLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAW 406 (562)
Q Consensus 331 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~ 406 (562)
.+.|.+..... +...+--.|.+....+..+...-.. -+.......+.+.+.++ -
T Consensus 633 -------~ii~~~~~~~~-----------~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~----n 690 (1133)
T KOG1943|consen 633 -------SIIPPICDRYF-----------YRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLP----N 690 (1133)
T ss_pred -------hhccHHHHHHh-----------ccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcch----H
Confidence 00000000000 0000001223333333333221111 11112222333333222 2
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC-ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
..|.++..+++.++...-..=......++...+..+.++ +..+|....-++|.+...+- ...+-+.+...++
T Consensus 691 ~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i-------~~~~q~~lc~~~l 763 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELI-------HRHLQEKLCKLVL 763 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhh-------chHHHHHHHHHHh
Confidence 789999999998886542110111124666666777665 78899988888888876543 2233334444444
Q ss_pred HHhccC-CHHHHHHHHHHHHHHHHHcc-ccccccHHHHHHHHHHHHhhhh--------hhHHHHHHHHHHHHHHHHh
Q 008533 486 KRILDT-NKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMMAFGKYQ--------RRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 486 ~~l~d~-~~~vr~~a~~al~~l~~~~~-~~~~~~l~~il~~L~~~l~~~~--------~~~~~~~~~~l~~l~~~~~ 552 (562)
...... .+.-|.....++.++++... ..+..-...+++.|++.++++. .-+++.++.++..+...+.
T Consensus 764 ~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 764 ELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 433322 67778889999999998875 4566678888888888888863 1246688888888777666
No 65
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.2e-05 Score=78.24 Aligned_cols=337 Identities=12% Similarity=0.114 Sum_probs=205.4
Q ss_pred cCCCCCcchhHhhHHHHHHhhcCC-------------CHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCC--
Q 008533 169 DVPGLAECPINIFLPRLLQFFQSP-------------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDP-- 233 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~-------------~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-- 233 (562)
+.+..|+..++..++.+.+.++.. -..+|...|+.+.-++..-++.+.+.++.++.....++...
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~ 302 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSP 302 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 344455667889999999988731 13577888999988888778888888888777766655432
Q ss_pred C---HHHHHHHHHHHHHHHhh--Cccchh--hhHHHHHHHH-----------------------HhhcCCCChh-HHHHH
Q 008533 234 S---AEVRKLVCAAFNLLIEV--RPSFLE--PHLRNLFEYM-----------------------LQVNKDTDDD-VALEA 282 (562)
Q Consensus 234 ~---~~~~~~~~~~L~~l~~~--~~~~~~--~~l~~i~~~~-----------------------~~~~~~~~~~-v~~~a 282 (562)
+ ......+++.|..+++. +.+.|. +.+.++.+.+ -+.++..|-+ -|..|
T Consensus 303 ~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a 382 (960)
T KOG1992|consen 303 DTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAA 382 (960)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHH
Confidence 2 23445567777776653 222322 1223333222 1112222323 35678
Q ss_pred hhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCcccc
Q 008533 283 CEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIV 362 (562)
Q Consensus 283 ~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~ 362 (562)
++++..+++. ....+.+.+..-+..++..... +.+
T Consensus 383 ~dlvrgL~~~--fe~~vt~v~~~~v~~~l~~y~~-------------------------------------------nPS 417 (960)
T KOG1992|consen 383 IDLVRGLCKN--FEGQVTGVFSSEVQRLLDQYSK-------------------------------------------NPS 417 (960)
T ss_pred HHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcc-------------------------------------------CCC
Confidence 8888888886 2233333333333333321110 012
Q ss_pred chhcHhhhHHHHHHHHHhhhcc------------chhhhhHHHHHHHHcCCC-CCCchhHHHHHHHHHHHhhcchhhhhh
Q 008533 363 NVWNLRKCSAAALDVLSNVFGD------------EILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYP 429 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~------------~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~i~~~~~~~~~~ 429 (562)
.+|.-...+...+..++...+. .+...+...+...+.+++ ...+-.|.+++.-+..+=...+ .+
T Consensus 418 ~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~---~~ 494 (960)
T KOG1992|consen 418 GNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLG---KE 494 (960)
T ss_pred ccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCC---hH
Confidence 2354455555555555543210 122233344444455522 1225666666543333223222 45
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh----hcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 008533 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ----DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (562)
Q Consensus 430 ~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~ 505 (562)
++-.++|.+...|..+.+.|-.-|+.++.++...-.+ -.++....++...++..+++.++-+...--....+++.+
T Consensus 495 ~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImR 574 (960)
T KOG1992|consen 495 HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMR 574 (960)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHH
Confidence 6788899999999988899999999999988765433 113445677788888888888776544444577888888
Q ss_pred HHHHccccccccHHHHHHHHHHHHhhhh----hhH-HHHHHHHHHHHHHHHhh
Q 008533 506 LEEEAAEELAPRLEIILQHLMMAFGKYQ----RRN-LRIVYDAIGTLADAVGF 553 (562)
Q Consensus 506 l~~~~~~~~~~~l~~il~~L~~~l~~~~----~~~-~~~~~~~l~~l~~~~~~ 553 (562)
++....+...|+.+.++..|...+.... +.. -..++|++|.++...++
T Consensus 575 ii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~ 627 (960)
T KOG1992|consen 575 IISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK 627 (960)
T ss_pred HHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 8888888888999999999888887642 222 33789999998887764
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.95 E-value=5e-08 Score=89.11 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=131.7
Q ss_pred chhcHhhhHHHHHHHHHhhh-ccchhhhhH-------HHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH
Q 008533 363 NVWNLRKCSAAALDVLSNVF-GDEILPTLM-------PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~-~~~~~~~l~-------~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~ 434 (562)
..|+.|..+...+..+...- +....+.+. ..+...+.+.. ..+...|+.+++.++..++..+.++++.+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 35999999999999888765 222223333 34445555555 67888999999999999998899999999
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHcc--
Q 008533 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV-LMGLLKRILDTNKRVQEAACSAFATLEEEAA-- 511 (562)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~i-l~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-- 511 (562)
+|.++..+.|+...++.+|..++..++..++ +...+ .+.+...+++.++.+|..++..+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS----------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999998642 33455 6666777888999999999999999998876
Q ss_pred -ccccc--cHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 008533 512 -EELAP--RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (562)
Q Consensus 512 -~~~~~--~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (562)
..+.. .++.+.+.+...+.+++.+++..+-+++..+.+..|+...
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 45554 3689999999999999999999999999999998887653
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=5.6e-06 Score=82.22 Aligned_cols=255 Identities=13% Similarity=0.149 Sum_probs=157.3
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccch
Q 008533 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL 256 (562)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~ 256 (562)
...++-+.++.+|++..+-+|+.|+..+..++.--|+.+.+.|+ .+.+.+.++|+.+..+++..+|.++...|..+
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 34678888999999999999999999998887766777776654 45556689999999999999999999988865
Q ss_pred hhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCC
Q 008533 257 EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRD 336 (562)
Q Consensus 257 ~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 336 (562)
-+.-+.++.++.. .+++. +-+..+..++.++-.+. +.-+ ++++.+...|..+.- .
T Consensus 217 L~LAP~ffklltt--SsNNW-mLIKiiKLF~aLtplEP--RLgK----KLieplt~li~sT~A-m--------------- 271 (877)
T KOG1059|consen 217 LQLAPLFYKLLVT--SSNNW-VLIKLLKLFAALTPLEP--RLGK----KLIEPITELMESTVA-M--------------- 271 (877)
T ss_pred ccccHHHHHHHhc--cCCCe-ehHHHHHHHhhccccCc--hhhh----hhhhHHHHHHHhhHH-H---------------
Confidence 4444444443332 22233 44555566666654421 1111 222222221110000 0
Q ss_pred CCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh-----hcc--chhhhhHHHHHHHHcCCCCCCchhH
Q 008533 337 QDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-----FGD--EILPTLMPVIQAKLSASGDEAWKDR 409 (562)
Q Consensus 337 ~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~-----~~~--~~~~~l~~~l~~~l~~~~~~~~~~r 409 (562)
++ .-+|+..+... .++ .......+-+..++.++| ...|
T Consensus 272 -----------------------------SL---lYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsD---qNLK 316 (877)
T KOG1059|consen 272 -----------------------------SL---LYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSD---QNLK 316 (877)
T ss_pred -----------------------------HH---HHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCC---ccHH
Confidence 00 00111111110 111 112222334444566778 8999
Q ss_pred HHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc
Q 008533 410 EAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (562)
Q Consensus 410 ~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 489 (562)
+-++.+++.++...++.+..+ -..++.+|.|.++.||..|+..+-.+.. +..+..|+..|+..+.
T Consensus 317 YlgLlam~KI~ktHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmVs-----------kkNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 317 YLGLLAMSKILKTHPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMVS-----------KKNLMEIVKTLMKHVE 381 (877)
T ss_pred HHHHHHHHHHhhhCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHhh-----------hhhHHHHHHHHHHHHH
Confidence 999999999998777655444 3467788999999999999998877765 3445555555555443
Q ss_pred cCC-HHHHHHHHHHHHHHHHHc
Q 008533 490 DTN-KRVQEAACSAFATLEEEA 510 (562)
Q Consensus 490 d~~-~~vr~~a~~al~~l~~~~ 510 (562)
..+ ...|.....-+..+|...
T Consensus 382 ~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 382 KAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred hccchhHHHHHHHHHHHHhhhh
Confidence 333 467777766666666544
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.91 E-value=5.5e-08 Score=88.84 Aligned_cols=183 Identities=20% Similarity=0.242 Sum_probs=129.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC-----ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhH
Q 008533 231 NDPSAEVRKLVCAAFNLLIEVR-----PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (562)
Q Consensus 231 ~~~~~~~~~~~~~~L~~l~~~~-----~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~ 305 (562)
.+.+.+.|..++..|..++... +..+.+++..++..+...+.+....+...|+.++..++.. ....+.++++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~--l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQ--LGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHH--HGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HhHhHHHHHHH
Confidence 4567899999999999988776 2333344555556666777777777889999999999886 55568888899
Q ss_pred HHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc
Q 008533 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (562)
Q Consensus 306 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (562)
++|.++..+.... -.++..|..++..+....+
T Consensus 95 ~l~~Ll~~~~~~~----------------------------------------------~~i~~~a~~~L~~i~~~~~-- 126 (228)
T PF12348_consen 95 LLPPLLKKLGDSK----------------------------------------------KFIREAANNALDAIIESCS-- 126 (228)
T ss_dssp HHHHHHHGGG-------------------------------------------------HHHHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHHHcccc----------------------------------------------HHHHHHHHHHHHHHHHHCC--
Confidence 9999887654211 1478889999999999887
Q ss_pred hhhhh-HHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch---hhhhh--hHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 008533 386 ILPTL-MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI---KGLYP--HLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (562)
Q Consensus 386 ~~~~l-~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~---~~~~~--~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (562)
..+.+ .+.+....++.+ +.+|..++.++..+....+ ..+.. .++.+.+.+...+.|+++.||.+|-.++..
T Consensus 127 ~~~~~~~~~l~~~~~~Kn---~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~ 203 (228)
T PF12348_consen 127 YSPKILLEILSQGLKSKN---PQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWA 203 (228)
T ss_dssp H--HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 11234 677777777777 9999999999999988776 44433 468899999999999999999999999999
Q ss_pred hHHHHhh
Q 008533 460 FSKFIVQ 466 (562)
Q Consensus 460 l~~~~~~ 466 (562)
+...+++
T Consensus 204 l~~~~~~ 210 (228)
T PF12348_consen 204 LYSHFPE 210 (228)
T ss_dssp HHHHH-H
T ss_pred HHHHCCH
Confidence 9888765
No 69
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.85 E-value=5.8e-05 Score=81.36 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=112.7
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCC
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~ 174 (562)
+.++..++++...+|..|..|++.|+..++. -.-|++...+...+.++...+|++|+..+|..+-..++
T Consensus 819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e---------- 888 (1692)
T KOG1020|consen 819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE---------- 888 (1692)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH----------
Confidence 4556667788999999999999999999854 45688888899999999999999999999988877665
Q ss_pred cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 008533 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (562)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~ 249 (562)
.+.++...+.....|+...||+.+++++..++..-|+ ...+..+.-.++....|.+..+++.+++.+.++-
T Consensus 889 --~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd--f~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 --LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD--FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred --HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC--hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 3567788889999999999999999999999887664 2223445556666667766669999999888764
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.84 E-value=2e-05 Score=76.47 Aligned_cols=285 Identities=15% Similarity=0.093 Sum_probs=133.8
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
.++.|.+-..+++.-..|.-.+.+.+..+.. ...+.+ ++..+..+...+....-..|-.+++.|..++..+|..+.
T Consensus 263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~---~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF---VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee
Confidence 3444444445555555666677776666543 223222 334455555556666677888999999999999887754
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccCh-----hhHhhhhh-hhccC
Q 008533 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD-----DDESLVEA-EEDES 331 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~-----~~~~~~~~-~~~~~ 331 (562)
..-+++-. ...|....+..+|+..+..-...+. +.. +-++++..+.-|...- +-++.+.- -|..
T Consensus 340 vcN~evEs----LIsd~Nr~IstyAITtLLKTGt~e~----idr-Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k- 409 (898)
T COG5240 340 VCNKEVES----LISDENRTISTYAITTLLKTGTEET----IDR-LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK- 409 (898)
T ss_pred ecChhHHH----HhhcccccchHHHHHHHHHcCchhh----HHH-HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-
Confidence 32222211 1223333344444433332222111 111 1122222222111000 00000000 0000
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHH
Q 008533 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREA 411 (562)
Q Consensus 332 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (562)
.. .+..++....+ + ...+...+++.+++..+....|+. -...+..+...+.+.. --+.
T Consensus 410 ---~~-s~l~FL~~~L~---~---------eGg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDce-----y~~I 467 (898)
T COG5240 410 ---KL-SYLDFLGSSLL---Q---------EGGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCE-----YHQI 467 (898)
T ss_pred ---HH-HHHHHHHHHHH---h---------cccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcc-----hhHH
Confidence 00 00000000000 0 011234555555555555544331 1123333333443322 2233
Q ss_pred HHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC
Q 008533 412 AVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (562)
Q Consensus 412 al~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (562)
++..|+-+.+..+..-.| ...+..+.+.+-=.+..||.+|+.++++++-.... .-..+.+...+-++++|.
T Consensus 468 ~vrIL~iLG~EgP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-------~~~~~sv~~~lkRclnD~ 538 (898)
T COG5240 468 TVRILGILGREGPRAKTP--GKYVRHIYNRLILENNIVRSAAVQALSKFALNISD-------VVSPQSVENALKRCLNDQ 538 (898)
T ss_pred HHHHHHHhcccCCCCCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-------cccHHHHHHHHHHHhhcc
Confidence 444444444433221111 11333444444445678999999999999876531 223356667777899999
Q ss_pred CHHHHHHHHHHHHHHH
Q 008533 492 NKRVQEAACSAFATLE 507 (562)
Q Consensus 492 ~~~vr~~a~~al~~l~ 507 (562)
+..||.+|..++..+-
T Consensus 539 DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 539 DDEVRDRASFLLRNMR 554 (898)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 9999999999988764
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.80 E-value=6e-08 Score=73.41 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Q 008533 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~ 528 (562)
-|.+++.+++..+..++.. ..+|++.+++.++.++.|++++||..||.+|.++++.++..+.+++++++..|.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999888753 68999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHH
Q 008533 529 FGKYQRRNLRIVYDAIG 545 (562)
Q Consensus 529 l~~~~~~~~~~~~~~l~ 545 (562)
+.+++..++..+ +.+.
T Consensus 77 ~~D~d~~Vr~~a-~~Ld 92 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLD 92 (97)
T ss_pred HcCCchhHHHHH-HHHH
Confidence 999877655433 4443
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.79 E-value=3.2e-05 Score=77.05 Aligned_cols=368 Identities=16% Similarity=0.166 Sum_probs=215.5
Q ss_pred HHhhhhhCCch---HHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHhhcchhcc-c
Q 008533 97 ELLPCLGAADR---HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDIPQVL-D 167 (562)
Q Consensus 97 ~ll~~l~~~~~---~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~~~~al~~l~~i~~~~~~~~-~ 167 (562)
.++..|.+.+. .-....-.+++.++.. +.-|..+.+.+.+.+.. .+....+..+.++..+.+...... .
T Consensus 3 ~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 3 ALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred hHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 34555544322 3334455566666653 34566666666655542 245677788888888887765543 1
Q ss_pred ccCCCCCcchhHh-hHHHHHHhhcC-----C--CHHHHHHHHHHHHHHHhhchhhHHhc-hHHHHHHHhh-----hcc-C
Q 008533 168 SDVPGLAECPINI-FLPRLLQFFQS-----P--HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFL-----LSN-D 232 (562)
Q Consensus 168 ~~~~~~~~~~~~~-il~~l~~~l~~-----~--~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~-----~~~-~ 232 (562)
.+. ..+.+. ++|.++..... . +..+-..+...+..++..++..-... +..+...+.. -.. .
T Consensus 81 ~~~----~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~ 156 (415)
T PF12460_consen 81 EDN----SWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPS 156 (415)
T ss_pred chH----HHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcc
Confidence 110 112222 66666665532 1 24555666666666666665433322 2222222220 000 1
Q ss_pred CC--HHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHhh-cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHH
Q 008533 233 PS--AEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (562)
Q Consensus 233 ~~--~~~~~~~~~~L~~l~~~-~~~~~~~~l~~i~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~ 308 (562)
.. .......+..+..++.. .++...+...++++-++.. ....++..|..+.+++..++..-...+.+..+++.+..
T Consensus 157 ~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~ 236 (415)
T PF12460_consen 157 SSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQ 236 (415)
T ss_pred ccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Confidence 11 11233334444444333 3333224455555555554 23344778888888888887651111223333333222
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh---ccc
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF---GDE 385 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---~~~ 385 (562)
.+ . .. .+. ..+..+.+.+.-++..+ |..
T Consensus 237 ~~----~-~~---------------------------------~~~-----------~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 237 SI----S-SS---------------------------------EDS-----------ELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred hh----c-cc---------------------------------CCc-----------chhHHHHHHHHHHHHHHHHcCCc
Confidence 21 0 00 000 12333444444444433 333
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhh-------------hhhhHHHHHHHHhhhcCCCChhHHHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKG-------------LYPHLSEIVAFLIPLLDDKFPLIRSI 452 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~-------------~~~~l~~~~~~l~~~l~d~~~~vr~~ 452 (562)
....+...+.+.+.+ ......+..+++.+.....+. -..++..++|.++...++.+...|.+
T Consensus 268 ~~~~~~~~L~~lL~~-----~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 268 LATELLDKLLELLSS-----PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred hHHHHHHHHHHHhCC-----hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 344556666666665 345677777777777552211 13467788999999998877779999
Q ss_pred HHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Q 008533 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (562)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~ 528 (562)
.+.+++.+.+++|.. ...++++.++|.++++|.-+++.++..+..+|..+++..++.+.+|++.+++.|+++
T Consensus 343 yL~ALs~ll~~vP~~----vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 343 YLTALSHLLKNVPKS----VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhhCCHH----HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 999999999998764 578899999999999999889999999999999999998889999999999998764
No 73
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.77 E-value=6.7e-06 Score=79.56 Aligned_cols=168 Identities=15% Similarity=0.114 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhH
Q 008533 69 QAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINH 147 (562)
Q Consensus 69 ~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~ 147 (562)
+.|++.+-+.+..... -+++.+.++++.|-..+.+.-+.|.--+|..+..++... .++.....+..|...+++.....
T Consensus 241 q~a~V~lvr~~~~ll~-~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 241 QLAGVLLVRATVELLK-ENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVL 319 (898)
T ss_pred chhheehHHHHHHHHH-hChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHH
Confidence 3444444444433222 234566777877777888888888888999888888775 56677788888999999998899
Q ss_pred HhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHh
Q 008533 148 MEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLF 227 (562)
Q Consensus 148 ~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~ 227 (562)
|.+|+.+|.++.-..+.... ..=+.+-.+++|.+-.+-.-|+..+..... ...++.+++.+.
T Consensus 320 rFsA~Riln~lam~~P~kv~------------vcN~evEsLIsd~Nr~IstyAITtLLKTGt------~e~idrLv~~I~ 381 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKVS------------VCNKEVESLISDENRTISTYAITTLLKTGT------EETIDRLVNLIP 381 (898)
T ss_pred HHHHHHHHHHHHhhCCceee------------ecChhHHHHhhcccccchHHHHHHHHHcCc------hhhHHHHHHHHH
Confidence 99999999999988776432 122344555666655555555444433221 112223333333
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCccc
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 255 (562)
+...|-+...+.-+++++..++..+|..
T Consensus 382 sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 382 SFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred HHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 3333323334444455555555554443
No 74
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.75 E-value=1.9e-08 Score=68.29 Aligned_cols=55 Identities=42% Similarity=0.664 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
|++|.+|+.+||.++....+.+.++++.++|.+...|.|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999998889999999999999999999999999999999975
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=3.2e-06 Score=77.23 Aligned_cols=397 Identities=15% Similarity=0.089 Sum_probs=228.4
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI- 126 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~- 126 (562)
+.....+.+++ +.++.+.-.|+..+.|.-.+.=...---....+-..+.+++.+ ...+|..+..||-.++..+..
T Consensus 85 es~epvl~llq---s~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQ---SCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhHHHHHHh---CcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccch
Confidence 44444444444 6788888888888887653321110000011112233344444 445666678888889887532
Q ss_pred Cch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 008533 127 AGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (562)
Q Consensus 127 ~~w--~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (562)
... ..-+..+..+.++.+..++..+..+|..+.......-. -....-+|.++..+++.+..+|.-+..++
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~--------LV~aG~lpvLVsll~s~d~dvqyycttai 232 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRV--------LVHAGGLPVLVSLLKSGDLDVQYYCTTAI 232 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhh--------hhccCCchhhhhhhccCChhHHHHHHHHh
Confidence 222 22244455667778888888888888777665443210 02244688899999999999999999999
Q ss_pred HHHHhhc--hhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHH
Q 008533 205 NQFIMLM--PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALE 281 (562)
Q Consensus 205 ~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~ 281 (562)
+.+.-.- ...+.+.-+.+++.+..+..++++.++-.+-.+|..++... ++..+... .-+|.+++.++++.-.....
T Consensus 233 snIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plila 311 (550)
T KOG4224|consen 233 SNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILA 311 (550)
T ss_pred hhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHH
Confidence 8876432 12334444567888999888999999988888888776542 11222222 23455566666665444444
Q ss_pred HhhhHHHhhccccchhhH--HhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 008533 282 ACEFWHSYFEAQLPHENL--KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (562)
Q Consensus 282 a~~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (562)
..-++..++-++.-...+ ..++..++..+ ... |++
T Consensus 312 sVaCIrnisihplNe~lI~dagfl~pLVrlL----~~~----------------------------------dnE----- 348 (550)
T KOG4224|consen 312 SVACIRNISIHPLNEVLIADAGFLRPLVRLL----RAG----------------------------------DNE----- 348 (550)
T ss_pred HHHHHhhcccccCcccceecccchhHHHHHH----hcC----------------------------------Cch-----
Confidence 444554444332111100 11222222222 111 111
Q ss_pred cccchhcHhhhHHHHHHHHHhhhcc---ch-hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHH
Q 008533 360 DIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV 435 (562)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~ 435 (562)
.+.-.|..+|..++..... .+ -...+|.+...+-+.. -+.+.+..|+.+.-++.+..+..+.. ..++
T Consensus 349 ------eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p-vsvqseisac~a~Lal~d~~k~~lld--~gi~ 419 (550)
T KOG4224|consen 349 ------EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP-VSVQSEISACIAQLALNDNDKEALLD--SGII 419 (550)
T ss_pred ------hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC-hhHHHHHHHHHHHHHhccccHHHHhh--cCCc
Confidence 1233355566666553211 11 1245666777666654 11444555555444444444433211 2378
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcC--CCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
|.+++...+.+..||.+|+.+++++++......+ .....+ .+.+-..+.+.+.+....++..+.+++..+++.-
T Consensus 420 ~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P-~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 420 PILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHP-VQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred ceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCc-chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999999999975432100 000011 1445555666677767889999999999999875
No 76
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.68 E-value=1.4e-07 Score=76.57 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=90.1
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
.+++.+.+.+.+++ |..|..++.+++.++....+....++. .++|.+.+.+.++++.++..|++++++++...+..
T Consensus 7 ~~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 7 GGLPALVSLLSSSD---ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred CChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 35677777888888 999999999999999876544445555 78999999999999999999999999999764321
Q ss_pred cCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 468 IGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 468 ~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
..... ..+++.+++.+++.+..++..++++|.+++
T Consensus 84 -----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 -----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12223 347899999999989999999999999886
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=4.5e-07 Score=82.64 Aligned_cols=330 Identities=17% Similarity=0.108 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc
Q 008533 111 STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (562)
Q Consensus 111 ~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (562)
+.++-+.+.+...+...--.+....+...+++.++..+.++-..++.+.-..+... +. ..+..+=+.+.+.+.
T Consensus 65 rsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~------li-v~l~Gl~~Li~qmmt 137 (550)
T KOG4224|consen 65 RSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKG------LI-VSLLGLDLLILQMMT 137 (550)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCce------EE-EeccChHHHHHHhcC
Confidence 34555666666554222223445556667888888888888888887765544321 00 012223334445444
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHh
Q 008533 191 SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQ 269 (562)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l-~~i~~~~~~ 269 (562)
.+.++|..+.+|+.+++.+......-.--.-+..+..+.+..+..++..+..+|..+...+... +... ..-+|+++.
T Consensus 138 -d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnR-r~LV~aG~lpvLVs 215 (550)
T KOG4224|consen 138 -DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENR-RVLVHAGGLPVLVS 215 (550)
T ss_pred -CCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhh-hhhhccCCchhhhh
Confidence 4568999999999998876321111001112344445566667788888888887776543322 0101 123567777
Q ss_pred hcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCC
Q 008533 270 VNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (562)
Q Consensus 270 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (562)
..+..+.+++.++...++.++-.....+.+.+.-++++|.++..|....+
T Consensus 216 ll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~------------------------------ 265 (550)
T KOG4224|consen 216 LLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD------------------------------ 265 (550)
T ss_pred hhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh------------------------------
Confidence 88899999999999888887655333445555556788887766532111
Q ss_pred CCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--ch-hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh-
Q 008533 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK- 425 (562)
Q Consensus 350 ~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~- 425 (562)
.+.-.|..+|..++..-.- ++ -..-+|.+.+.++++. -....+...|+..++-....
T Consensus 266 ----------------kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~---~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 266 ----------------KVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM---GPLILASVACIRNISIHPLNE 326 (550)
T ss_pred ----------------HHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc---hhHHHHHHHHHhhcccccCcc
Confidence 2444466677777653321 11 1245688888888876 66777778888666543321
Q ss_pred hh---hhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHH
Q 008533 426 GL---YPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAAC 500 (562)
Q Consensus 426 ~~---~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~ 500 (562)
.+ ..|+. .+...|.- ++..++..|..++-+++...... ...+. ...++.+...+-|....||....
T Consensus 327 ~lI~dagfl~----pLVrlL~~~dnEeiqchAvstLrnLAasse~n-----~~~i~esgAi~kl~eL~lD~pvsvqseis 397 (550)
T KOG4224|consen 327 VLIADAGFLR----PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN-----VSVIRESGAIPKLIELLLDGPVSVQSEIS 397 (550)
T ss_pred cceecccchh----HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh-----hHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence 11 12333 34445553 45678999999998888644321 12222 35577777777787778888777
Q ss_pred HHHHHHH
Q 008533 501 SAFATLE 507 (562)
Q Consensus 501 ~al~~l~ 507 (562)
.++..+.
T Consensus 398 ac~a~La 404 (550)
T KOG4224|consen 398 ACIAQLA 404 (550)
T ss_pred HHHHHHH
Confidence 7776665
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00014 Score=72.36 Aligned_cols=408 Identities=13% Similarity=0.122 Sum_probs=231.2
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----C--------CChHHHHHHHHhhccCCCHHHHH-HHHHHHHHH
Q 008533 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ----F--------PDFNNYLAFILARAEGKSVEIRQ-AAGLLLKNN 78 (562)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~--------~~~~~~l~~il~~~~~~~~~~R~-~a~~~lk~~ 78 (562)
+++.-+..=++++.+.+. .++...+.|.++++ . ..++.-|+.|..- +.+..-=+ -|+.+|+..
T Consensus 11 rGL~vFISDlRncq~kea--E~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~ll--g~dIdFGhmEaV~LLss~ 86 (938)
T KOG1077|consen 11 RGLAVFISDLRNCQSKEA--EEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLL--GYDIDFGHMEAVNLLSSN 86 (938)
T ss_pred hhHHHHHHHhhhhhchHH--HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHh--cCccccchHHHHHHhhcC
Confidence 466667777776666554 45566677766442 1 1255555555443 22222111 223333211
Q ss_pred H--HHhhcc--------CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC--Chh
Q 008533 79 L--RTAYKS--------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN--DIN 146 (562)
Q Consensus 79 i--~~~w~~--------l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~--~~~ 146 (562)
. .+.... =+.+....+.+.+.+-|.+.++.....|.++|+.|...+..+ .+-+++-+++.++ .+-
T Consensus 87 kysEKqIGYl~is~L~n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~e---a~~~DI~KlLvS~~~~~~ 163 (938)
T KOG1077|consen 87 KYSEKQIGYLFISLLLNENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAE---AFADDIPKLLVSGSSMDY 163 (938)
T ss_pred CccHHHHhHHHHHHHHhcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHH---HhhhhhHHHHhCCcchHH
Confidence 1 000000 012233333344444455567777778889999998776332 2333444556554 357
Q ss_pred HHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHH
Q 008533 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGL 226 (562)
Q Consensus 147 ~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l 226 (562)
+++.|..||..+.+..++.+.+ +.-...++.+|.|.+-.|-.++...+..++...|+.....++.-+..+
T Consensus 164 vkqkaALclL~L~r~spDl~~~----------~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L 233 (938)
T KOG1077|consen 164 VKQKAALCLLRLFRKSPDLVNP----------GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRL 233 (938)
T ss_pred HHHHHHHHHHHHHhcCccccCh----------hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHH
Confidence 7888888999999987775542 456778899999998888888888888888887776654444333333
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHhh-CccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhh
Q 008533 227 FLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP 304 (562)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~ 304 (562)
.........+. -+. ++..-.|.+. .++.++...-.-.|+.+|....+++..+......+...+...
T Consensus 234 ~riv~~~~t~~-----------qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq- 301 (938)
T KOG1077|consen 234 SRIVVVVGTSL-----------QDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQ- 301 (938)
T ss_pred HHHHhhcccch-----------hhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchH-
Confidence 22211100000 001 1111123333 333333333334455666666666655543310000000000
Q ss_pred HHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh-HHHHHHHHHhhhc
Q 008533 305 RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVFG 383 (562)
Q Consensus 305 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~-a~~~l~~l~~~~~ 383 (562)
+.+...+ -.+++..+...-+
T Consensus 302 -----------------------------------------------------------~~na~naVLFeaI~l~~h~D~ 322 (938)
T KOG1077|consen 302 -----------------------------------------------------------HSNAKNAVLFEAISLAIHLDS 322 (938)
T ss_pred -----------------------------------------------------------hhhhHHHHHHHHHHHHHHcCC
Confidence 0000000 1111111111111
Q ss_pred c-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc--hhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHH
Q 008533 384 D-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSR 459 (562)
Q Consensus 384 ~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~--~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~ 459 (562)
+ +.+...+..+.+.+++.+ ...|+-|+-.+..++..- .+.+..+ ...|+..|+ +++..||..|+..+=.
T Consensus 323 e~~ll~~~~~~Lg~fls~rE---~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSirrravDLLY~ 395 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRE---TNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIRRRAVDLLYA 395 (938)
T ss_pred cHHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 444555566677778877 889999998888877642 2333333 556667777 8899999999999888
Q ss_pred hHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHH
Q 008533 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L 525 (562)
+|.. .....|+..+++.|...++.+|+....=+.-+.+........|++.+++-+
T Consensus 396 mcD~-----------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLi 450 (938)
T KOG1077|consen 396 MCDV-----------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLI 450 (938)
T ss_pred Hhch-----------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 8864 345677788888887778899998888888888888888889988887644
No 79
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.59 E-value=1.1e-07 Score=80.38 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccccc----CC----CCCcchh
Q 008533 107 RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD----VP----GLAECPI 178 (562)
Q Consensus 107 ~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~----~~----~~~~~~~ 178 (562)
+.||++++.+++.|+..+++..||++++.+.+.+++ ++.....++.+|..+.+++....... .+ ..+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999988 57888899999999999887511100 00 0111234
Q ss_pred HhhHHHHHHhhcCCC----HHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHH
Q 008533 179 NIFLPRLLQFFQSPH----TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (562)
Q Consensus 179 ~~il~~l~~~l~~~~----~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L 245 (562)
..+++.+.+.++... .++...+++|+.+++.+.+...... ..+++.+++.+. +++.+..+++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 455555555555432 7899999999999999887544333 236777777774 355688888875
No 80
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.0002 Score=71.00 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
.+..-+..+..+.++.+|..|+..|..+.+.+. ....+.....+.+.|.+..||++|++.+..+...
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-------------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~ 264 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-------------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNR 264 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccccc-------------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 344447788888889999999988888777322 2355777889999999999999999999998887
Q ss_pred chhhH------HhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 008533 211 MPSAL------FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (562)
Q Consensus 211 ~~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l 260 (562)
.|... ....+..+..++....|.+..+|..+.+.|+.+-....+++.+-+
T Consensus 265 ~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTL 320 (823)
T KOG2259|consen 265 CPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTL 320 (823)
T ss_pred CCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHH
Confidence 64211 123455677778888888889999999999888776655554433
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.58 E-value=8e-06 Score=85.73 Aligned_cols=288 Identities=14% Similarity=0.100 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHH
Q 008533 107 RHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (562)
Q Consensus 107 ~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (562)
..-+..+...+..++.+. .......++|.+..+++++..++|..|+.+|..++....+.-..+ .. -+.+.++|.|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d-an---iF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD-AN---IFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc-ch---hhHhhhhhhh
Confidence 344556777777777764 456788999999999999999999999999998887665532111 11 2457788999
Q ss_pred HHhhcC-CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhh--hccCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 008533 186 LQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL--LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (562)
Q Consensus 186 ~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~ 262 (562)
-.++.| ....||.+-..++..++...-. +..+...+-. ..++++.+ ...-..+........+.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~r-----Fle~~q~~~~~g~~n~~nse---------t~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYR-----FLELTQELRQAGMLNDPNSE---------TAPEQNYNTELQALHHT 578 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHH-----HHHHHHHHHhcccccCcccc---------cccccccchHHHHHHHH
Confidence 999988 5567888888888887764311 1111111111 12333322 00000111111111222
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcc
Q 008533 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPR 342 (562)
Q Consensus 263 i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 342 (562)
+-+.+...+.++++-|+..-++-+..+|.-- ... ..-+.|++++...+-
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF---Gk~-ksND~iLshLiTfLN--------------------------- 627 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFF---GKE-KSNDVILSHLITFLN--------------------------- 627 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh---hhc-ccccchHHHHHHHhc---------------------------
Confidence 2333445567777778887777777776541 100 011234444444332
Q ss_pred cccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc-hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhh
Q 008533 343 FHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (562)
Q Consensus 343 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~ 421 (562)
| ..|..|.+-.+.+..++-.+|.. +-..++|++++.+.+++ ..+...|+.++..+++
T Consensus 628 ----------D---------kDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~E---E~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 628 ----------D---------KDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGE---EAVIVSALGSLSILIK 685 (1431)
T ss_pred ----------C---------ccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcc---hhhHHHHHHHHHHHHH
Confidence 1 13788888666666666666764 55678899999999998 8888999999988886
Q ss_pred cchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 422 ~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
..- --++++-+++..+.+.|..++-.||.+++..|...+..+..
T Consensus 686 ~~l-l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 686 LGL-LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred hcc-cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 321 11567888899999999999999999999999988876654
No 82
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.53 E-value=8.2e-05 Score=70.79 Aligned_cols=391 Identities=13% Similarity=0.094 Sum_probs=216.2
Q ss_pred CCchHHHHHHHHHHHHHHHhc----CcCchHHHHHH---------HHHHhccCChhHHhHHHHHHHHHhhcchhcccc--
Q 008533 104 AADRHIRSTVGTIVSVVVQLG----GIAGWLELLQA---------LVTCLDSNDINHMEGAMDALSKICEDIPQVLDS-- 168 (562)
Q Consensus 104 ~~~~~vr~~~~~~i~~i~~~~----~~~~w~~ll~~---------l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~-- 168 (562)
+...+||..+..++....+.. .-++|.-++|. +.-.++++++..|-.|+.++..+.+.....+..
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345678888888877777653 34788777653 223467888999999999999998876654321
Q ss_pred -cCCCCCcch-------hHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhchh-hHH-hchHHHHHHHhhhccCCCHHH
Q 008533 169 -DVPGLAECP-------INIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPS-ALF-VSMDQYLQGLFLLSNDPSAEV 237 (562)
Q Consensus 169 -~~~~~~~~~-------~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~-~~~-~~~~~~l~~l~~~~~~~~~~~ 237 (562)
-.+..|.++ +.+..-.++..+. ...+.+-...+||+..++...|= .+. ..+..+++.+-..+++.|+.+
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v 166 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNV 166 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 011112111 1112222333332 34567889999999999987662 121 234456777777788889999
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHH------------------------------HHH--------------------
Q 008533 238 RKLVCAAFNLLIEVRPSFLEPHLRNLF------------------------------EYM-------------------- 267 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~~~~~~~l~~i~------------------------------~~~-------------------- 267 (562)
+..++..+..++...... |.+...+ +.-
T Consensus 167 ~vs~l~~~~~~v~t~~~~--pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 167 RVSSLTLLGAIVSTHAPL--PEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred hhHHHHHHHHHHhcCCCC--HHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 999998888877643111 1111000 000
Q ss_pred --------------HhhcCC--CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccC
Q 008533 268 --------------LQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDES 331 (562)
Q Consensus 268 --------------~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 331 (562)
..+... ....+|..+++++..++.+ ....+.++-.+..++-.+|....-
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~---~~~~~~~~~~l~RvI~~~~~~~~p------------ 309 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY---FSMTQAYLMELGRVICKCMGEADP------------ 309 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccCCCCCh------------
Confidence 000000 0122566666666666653 233444444554444333321110
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh------hhH-HHHHHHH------
Q 008533 332 LPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP------TLM-PVIQAKL------ 398 (562)
Q Consensus 332 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~------~l~-~~l~~~l------ 398 (562)
++...+..+++.++..++.+..| ... ++-...+
T Consensus 310 ----------------------------------~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~ 355 (728)
T KOG4535|consen 310 ----------------------------------SIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPR 355 (728)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChh
Confidence 13333555666666555321111 011 1111111
Q ss_pred ---cCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcch
Q 008533 399 ---SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (562)
Q Consensus 399 ---~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (562)
.+.. .....+++.++..|.......+..--....+.+...++| ++..|+.+|..+.+-+..+-.- ....
T Consensus 356 ~~YDs~~---~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l----r~d~ 428 (728)
T KOG4535|consen 356 ALYDSEH---PTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL----RQDV 428 (728)
T ss_pred hhhhhcC---CCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch----hhhH
Confidence 1111 344555666666665433333222222345555555655 5667888998888877654221 1234
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc---ccccc----cHHHHHHHHHHHHhhh---hhhHHHHHHHHH
Q 008533 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---EELAP----RLEIILQHLMMAFGKY---QRRNLRIVYDAI 544 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~---~~~~~----~l~~il~~L~~~l~~~---~~~~~~~~~~~l 544 (562)
.+.....+.++..+.|..-.+|..++++++++.+..- +.... +...++..+....... ++++..++++++
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL 508 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL 508 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 5567778888888888778899999999999998762 22222 3333444333333322 245666899999
Q ss_pred HHHHHHHh
Q 008533 545 GTLADAVG 552 (562)
Q Consensus 545 ~~l~~~~~ 552 (562)
+++..-+.
T Consensus 509 gnllQvlq 516 (728)
T KOG4535|consen 509 GNLLQFLQ 516 (728)
T ss_pred hhHHHHHH
Confidence 98877655
No 83
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.52 E-value=2.5e-05 Score=77.84 Aligned_cols=214 Identities=20% Similarity=0.245 Sum_probs=156.2
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhh-hCCchHHHHHHHHHHHHHHHhc---C
Q 008533 50 NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-GAADRHIRSTVGTIVSVVVQLG---G 125 (562)
Q Consensus 50 ~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l-~~~~~~vr~~~~~~i~~i~~~~---~ 125 (562)
+..+..+..+ ..++..|..++..+--.+.| |..-+ ....+.+.+...+ ...++..|..+..++.-|.+.. +
T Consensus 191 l~~l~~~~~~--~~~~~~~~~~~~~la~LvNK-~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 191 LQSLLNLALS--SEDEFSRLAALQLLASLVNK-WPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHcC-CCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 3444454443 45578888888777766666 65422 3333444444444 3345555666666666665542 3
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC----CC-cchhHhhHHHHHHhhcCCCHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG----LA-ECPINIFLPRLLQFFQSPHTSLRKLS 200 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~----~~-~~~~~~il~~l~~~l~~~~~~vr~~a 200 (562)
...-.+++..+.+.+.+ +.....+-..++.++.+.+..+...... +. ++....++|.+++.+.+.+.+.|...
T Consensus 266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 34556788888888877 5567778888999988866654322111 12 57889999999999999888899999
Q ss_pred HHHHHHHHhhchhh-HHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh
Q 008533 201 LGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (562)
Q Consensus 201 l~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~ 270 (562)
+.++..++..+|.. +.++++.+++.+++.+.-++.+++..++++|..+++..++.+.+|++.+++.+++.
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999864 55778899999999988888999999999999999999999999999999988753
No 84
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.49 E-value=0.0026 Score=65.98 Aligned_cols=139 Identities=12% Similarity=0.072 Sum_probs=65.5
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH
Q 008533 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (562)
Q Consensus 53 l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l 132 (562)
+-+++..-.+.+.+.+.+.=..+.+.-+. | |+..-...+.+.+-+.++++.+|..+.+.++.+=. ++-|+.+
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~-~----P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~---~el~~~~ 128 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKL-K----PELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV---KELLGNI 128 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcc-C----HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh---HHHHHHH
Confidence 33343332244555555555444443222 2 22222333444445555566666555544444332 2355555
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
++.+.+++.++++.+|..|..++..+.+.-...+.. ......+...+.|+++.|...|+-++..+..
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~----------~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE----------LGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc----------ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 555666666555556666655555555444432210 1123333444455555555555555554443
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.48 E-value=2.7e-07 Score=62.51 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
|.||.+|+++||+++...++. ..++.+.+++.|+..|+|+++.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-----~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-----LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-----HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999988766553 5789999999999999999999999999999865
No 86
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.47 E-value=0.0013 Score=71.61 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh
Q 008533 110 RSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (562)
Q Consensus 110 r~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (562)
+..+..+.-.++... +...+..++..++..+..+.+..|-.|+.||..+.+.-+..+. ...+-..+-.-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~----------~~dvq~~Vh~R 863 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS----------RPDVQEAVHGR 863 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc----------CHHHHHHHHHh
Confidence 444555555555443 4467788899999999988899999999999999987665432 24455667778
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHH
Q 008533 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYML 268 (562)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~ 268 (562)
+.|++..||.+|+..++.++...|+...++.+ .+.+...|..-.||+.+++.+..++...|++ +.+..++--++
T Consensus 864 ~~DssasVREAaldLvGrfvl~~~e~~~qyY~----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf--~~i~~~cakml 937 (1692)
T KOG1020|consen 864 LNDSSASVREAALDLVGRFVLSIPELIFQYYD----QIIERILDTGVSVRKRVIKILRDICEETPDF--SKIVDMCAKML 937 (1692)
T ss_pred hccchhHHHHHHHHHHhhhhhccHHHHHHHHH----HHHhhcCCCchhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHH
Confidence 89999999999999999999888765554444 4445556777899999999999999999887 44455555555
Q ss_pred hhcCCCChhHHHHHhhhHHH
Q 008533 269 QVNKDTDDDVALEACEFWHS 288 (562)
Q Consensus 269 ~~~~~~~~~v~~~a~~~l~~ 288 (562)
....|.+..+...+.+.+..
T Consensus 938 rRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 938 RRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred HHhccchhHHHHHHHHHHHH
Confidence 56667666677777666544
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00036 Score=70.83 Aligned_cols=460 Identities=14% Similarity=0.133 Sum_probs=245.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~ 95 (562)
+..+-.++.|.-+. .|+.|.+..-..-. -++.....-+++.+..+.+...+.+.=..+.|.-.. |+. ....-.
T Consensus 15 i~elks~l~s~~~~-kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~-~P~----~a~~av 88 (734)
T KOG1061|consen 15 IPELKSQLNSQSKE-KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG-KPD----LAILAV 88 (734)
T ss_pred chHHHHHhhhhhhh-hHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc-Cch----HHHhhh
Confidence 33333333333335 77777777655332 334434444555554466777777777777766443 332 222333
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
+.+++-..++++.+|..|.+..+.+- .++.|..+..-+.++++++++.+|..+..+...+...-+....
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~-------- 157 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE-------- 157 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc--------
Confidence 45556667889999987655444332 3567888899999999999999999999888887776555432
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchh-hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
-..+++.+...+.|+++.|-..|+.++..+.+..++ ........++..++..+..-++--+..+++++. ...+.
T Consensus 158 --~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~---~y~p~ 232 (734)
T KOG1061|consen 158 --DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLA---EYVPK 232 (734)
T ss_pred --ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHH---hcCCC
Confidence 256788888888899999999999999999886553 111122233444444433222222333333333 33222
Q ss_pred chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHh---h------hh
Q 008533 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES---L------VE 325 (562)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~---~------~~ 325 (562)
.- .-..++++.+...+++....+...+..++...... .......++.++-+.++..+...+ +.. . +.
T Consensus 233 d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~--~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 233 DS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKY--LKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ 308 (734)
T ss_pred Cc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH--HHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence 21 11234444444444544444444444444433332 001111111222222211111111 000 0 00
Q ss_pred hhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCC
Q 008533 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEA 405 (562)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~ 405 (562)
..|.. -...++-+|... + |. -.+...-.+++..+ ..+..+++++.-+.++-..-|
T Consensus 309 ~~p~~----~~~~~~~Ff~ky-----n-------DP---iYvK~eKleil~~l---a~~~nl~qvl~El~eYatevD--- 363 (734)
T KOG1061|consen 309 KRPEI----LKVEIKVFFCKY-----N-------DP---IYVKLEKLEILIEL---ANDANLAQVLAELKEYATEVD--- 363 (734)
T ss_pred hChHH----HHhHhHeeeeec-----C-------Cc---hhhHHHHHHHHHHH---hhHhHHHHHHHHHHHhhhhhC---
Confidence 00000 000111111111 0 00 01223333333333 334445566666666666556
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
...-..++.++|.++....+. ..+++.++..+.-....|...++.++-.+...+|. ..+.++..+-
T Consensus 364 ~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~---------~~~~vv~~l~ 429 (734)
T KOG1061|consen 364 VDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN---------KYESVVAILC 429 (734)
T ss_pred HHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC---------chhhhhhhhc
Confidence 666777888888888765432 66777777877755566666666666666665431 2255555554
Q ss_pred HHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 486 KRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 486 ~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
..+.. ++|.-|.+..|.++...+.. +-.+.+++.+++.+.+ +.....++.+...++
T Consensus 430 ~~~~sl~epeak~amiWilg~y~~~i-----~~a~elL~~f~en~~d---E~~~Vql~LLta~ik 486 (734)
T KOG1061|consen 430 ENLDSLQEPEAKAALIWILGEYAERI-----ENALELLESFLENFKD---ETAEVQLELLTAAIK 486 (734)
T ss_pred ccccccCChHHHHHHHHHHhhhhhcc-----CcHHHHHHHHHhhccc---chHHHHHHHHHHHHH
Confidence 44433 25788888888888888765 3345566665555544 333344444444444
No 88
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0038 Score=63.56 Aligned_cols=259 Identities=16% Similarity=0.164 Sum_probs=132.4
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 258 (562)
..+++.+-.++.+....|--.|.+++..+-...+..+.+ .+..+...+..+..-+|-++.+.|.+++..+|.....
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 345555556666666666666666665554433333333 2344444455667889999999999999998876543
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCC
Q 008533 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (562)
Q Consensus 259 ~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (562)
--.++-+ ...|....+...|+..+..-...+. ++.++..+...+..-.++
T Consensus 320 cN~elE~----lItd~NrsIat~AITtLLKTG~e~s--------v~rLm~qI~~fv~disDe------------------ 369 (865)
T KOG1078|consen 320 CNLDLES----LITDSNRSIATLAITTLLKTGTESS--------VDRLMKQISSFVSDISDE------------------ 369 (865)
T ss_pred cchhHHh----hhcccccchhHHHHHHHHHhcchhH--------HHHHHHHHHHHHHhcccc------------------
Confidence 3223222 2344444555556554443332211 112222222222110000
Q ss_pred CCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCC---------------
Q 008533 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD--------------- 403 (562)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~--------------- 403 (562)
......+++..++..++..- ..+++++...+.+...
T Consensus 370 ----------------------------FKivvvdai~sLc~~fp~k~-~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~ii 420 (865)
T KOG1078|consen 370 ----------------------------FKIVVVDAIRSLCLKFPRKH-TVMMNFLSNMLREEGGFEFKRAIVDAIIDII 420 (865)
T ss_pred ----------------------------ceEEeHHHHHHHHhhccHHH-HHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 11223344444444443310 1223333333322100
Q ss_pred -CCchhHHHHHHHHHHHhhcch-hhhhhhH--------------HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 404 -EAWKDREAAVLALGAIAEGCI-KGLYPHL--------------SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 404 -~~~~~r~aal~~l~~i~~~~~-~~~~~~l--------------~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
.++..|+.++.-|..+.+.|. ..+...+ ..-+..+.+...=.+..||.+|..++.+++..
T Consensus 421 e~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~---- 496 (865)
T KOG1078|consen 421 EENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ---- 496 (865)
T ss_pred HhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC----
Confidence 003444555544444444332 0000000 01222233333334578999999999999832
Q ss_pred cCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 468 IGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
.....+.+...+.+++.|.+..||.+|..++..+-..
T Consensus 497 -----~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 497 -----DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred -----CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 2334567778888999999999999999999888744
No 89
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.35 E-value=0.00048 Score=65.12 Aligned_cols=211 Identities=19% Similarity=0.143 Sum_probs=143.1
Q ss_pred cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCC
Q 008533 271 NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (562)
Q Consensus 271 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 350 (562)
+.++....|..+++.+..+...+...+.+......|+..+...+.....
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~------------------------------- 100 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS------------------------------- 100 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-------------------------------
Confidence 3455577899999988887665445566666667777777666643211
Q ss_pred CCCCCCCCccccchhcHhhhHHHHHHHHHhhhc--c---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-
Q 008533 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG--D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI- 424 (562)
Q Consensus 351 ~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~--~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~- 424 (562)
.-+..|..++..++-.+| . .++..+.|.+.+.+.+. +.+...|.+++.+||.++-.+.
T Consensus 101 ---------------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~ 164 (309)
T PF05004_consen 101 ---------------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDS-SASPKARAACLEALAICTFVGGS 164 (309)
T ss_pred ---------------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcC
Confidence 013457778888887766 2 67788899999988875 2337788888888887654332
Q ss_pred --hhhh---hhHHHHHHHHhhhcC--------CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC
Q 008533 425 --KGLY---PHLSEIVAFLIPLLD--------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (562)
Q Consensus 425 --~~~~---~~l~~~~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (562)
+.+. ..++.++........ .+++.|..+|+.+.+-+...++.. .....++..++.+...|..+
T Consensus 165 d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~----~~~~~~~~~~~~l~~lL~s~ 240 (309)
T PF05004_consen 165 DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDS----KLEDLLEEALPALSELLDSD 240 (309)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHhcCC
Confidence 2222 233333332222111 124689999999999888877542 23567788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHccc----cccccHHHHHHHHHHHHhhh
Q 008533 492 NKRVQEAACSAFATLEEEAAE----ELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 492 ~~~vr~~a~~al~~l~~~~~~----~~~~~l~~il~~L~~~l~~~ 532 (562)
+..||.+|..+|.-+.+..++ ...+..+.+++.+-.+....
T Consensus 241 d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 241 DVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 999999999999999887642 34556777777776666653
No 90
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.34 E-value=0.0057 Score=63.93 Aligned_cols=368 Identities=13% Similarity=0.064 Sum_probs=193.6
Q ss_pred CchHHHHHHHHHHHHHHHhcCc---CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhh
Q 008533 105 ADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (562)
Q Consensus 105 ~~~~vr~~~~~~i~~i~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~i 181 (562)
.+..+| .+..++..++..... -.-.++++.|++++.+++......++.+|..+.-.....- . ..-..+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~--~------m~~~gi 332 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKD--E------MAESGI 332 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH--H------HHHcCC
Confidence 333444 566777777764311 1124578889999988888877777778877764432210 0 123568
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc-cchhh
Q 008533 182 LPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEP 258 (562)
Q Consensus 182 l~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~ 258 (562)
++.+.+.+.+++..++..+++++.++.... .....+. .+++.+..++.+ +..+.-++..|..+..... +..-.
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHh
Confidence 999999999999999999999999886521 2222222 245566666654 3455556666666654321 11111
Q ss_pred hHHHHHHHHHhh-cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 259 HLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 259 ~l~~i~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
+- +.+|.+.+. +..+++.+...++.++..++..+...+.+-. ...++.++......
T Consensus 409 ~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~--g~gL~~L~~ra~~~-------------------- 465 (708)
T PF05804_consen 409 YT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE--GNGLQSLMKRALKT-------------------- 465 (708)
T ss_pred hc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh--cCcHHHHHHHHHhc--------------------
Confidence 11 234444433 2334444555555666666655322111111 01222222111000
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHH---HHHcCCCCCCchhHHHHHH
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQ---AKLSASGDEAWKDREAAVL 414 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~---~~l~~~~~~~~~~r~aal~ 414 (562)
........+..++..-|. .-..+.+++. ..+.+.++ +.....++.
T Consensus 466 -----------------------------~D~lLlKlIRNiS~h~~~-~k~~f~~~i~~L~~~v~~~~~--ee~~vE~LG 513 (708)
T PF05804_consen 466 -----------------------------RDPLLLKLIRNISQHDGP-LKELFVDFIGDLAKIVSSGDS--EEFVVECLG 513 (708)
T ss_pred -----------------------------ccHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhcCCc--HHHHHHHHH
Confidence 001134566666665433 1112222322 33443321 443344444
Q ss_pred HHHHHhhcchhhhhhhHH--HHHHHHhhhcCC--CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHh
Q 008533 415 ALGAIAEGCIKGLYPHLS--EIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRI 488 (562)
Q Consensus 415 ~l~~i~~~~~~~~~~~l~--~~~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l 488 (562)
+|+.+... .......+. .++|.+...|.. .++.+.-.++-.+|.++..-. -...+ .++++.++..|
T Consensus 514 iLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~-------~A~lL~~sgli~~Li~LL 585 (708)
T PF05804_consen 514 ILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE-------CAPLLAKSGLIPTLIELL 585 (708)
T ss_pred HHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH-------HHHHHHhCChHHHHHHHH
Confidence 44444322 123344443 478888888763 345677778888888775321 12222 25555555555
Q ss_pred ccC--CHHHHHHHHHHHHHHHHHc--cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 489 LDT--NKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 489 ~d~--~~~vr~~a~~al~~l~~~~--~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
+.. +...-...+.++.+++.+- ++.+... .++...|++++.+.+...++.+-.|+..+++
T Consensus 586 ~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 586 NAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 432 3555566888888888653 2222221 4577778888888766666654444444443
No 91
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00048 Score=68.37 Aligned_cols=226 Identities=17% Similarity=0.136 Sum_probs=128.7
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc---ccc-
Q 008533 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QLP- 295 (562)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~---~~~- 295 (562)
...+..+.....+.|+.+|..+++.|..+.+.. .+ -+.+.....+.++|.+++||..|++.+.-+... +..
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344566777778899999999999998887721 11 134556666778999999999998765554433 100
Q ss_pred hhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHH
Q 008533 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (562)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (562)
...-....+..+..+-..+. +-+|.+|..|.+++
T Consensus 272 e~~e~kl~D~aF~~vC~~v~----------------------------------------------D~sl~VRV~AaK~l 305 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVR----------------------------------------------DRSLSVRVEAAKAL 305 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHh----------------------------------------------cCceeeeehHHHHh
Confidence 00001111222221111111 12477899999998
Q ss_pred HHHHhhhccchhhhhHHHHHHHHcCCCCCCch---hHHHHHHHHHHHhhcc-------hhhhhhhHHHHHH-----HHhh
Q 008533 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWK---DREAAVLALGAIAEGC-------IKGLYPHLSEIVA-----FLIP 440 (562)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~---~r~aal~~l~~i~~~~-------~~~~~~~l~~~~~-----~l~~ 440 (562)
+.+.+.-. + .+.+++...+.+.. --|+ .|-..+..=|....|- .+.....-..++| .++.
T Consensus 306 G~~~~vSe-e---~i~QTLdKKlms~l-RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~Vh 380 (823)
T KOG2259|consen 306 GEFEQVSE-E---IIQQTLDKKLMSRL-RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVH 380 (823)
T ss_pred chHHHhHH-H---HHHHHHHHHHhhhh-hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeee
Confidence 88765432 1 33344433333321 0011 1111222222222211 1111111222333 3566
Q ss_pred hcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
.+.|.--.||.+|+..++.++..- ..+-...+..|+.+++|....||..|..+|..+..+.
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~ss---------P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l 441 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATSS---------PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL 441 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcCC---------CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 677777889999988888888753 2344567778888888888888888888888887763
No 92
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.28 E-value=0.00012 Score=63.40 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHH
Q 008533 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (562)
Q Consensus 106 ~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (562)
++.||..+..+++.++... +......++.+..+++|+++.+|..|+.++..+...-.- +.-+.++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhHHH
Confidence 4689999999999999875 455566788999999999999999999999998765222 1235566778
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhh-chhhHHhchHHHHHHHhhhcc-----CCCHHHHHHHHHHHHHHHh
Q 008533 186 LQFFQSPHTSLRKLSLGSVNQFIML-MPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~L~~l~~ 250 (562)
+.++.|++++||..|..+|..+... .|..+...++.++..+-...+ ..+.+-+..+++.+...+.
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 8899999999999999999998876 555566666655555544322 1234555666666655554
No 93
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.27 E-value=0.00014 Score=69.18 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=130.1
Q ss_pred HHHHHHHH-HHHHHHhhCccchhhhHHHHHHHHHhhcCC-CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh
Q 008533 236 EVRKLVCA-AFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 236 ~~~~~~~~-~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
+-++.++. ....+++..-..-.+|+.+|+..+++.+.+ .++..+..|+..+..+++. ....+..+....+..++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~--Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN--QPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh--chHhhhchHHHHHHHHHHH
Confidence 34455555 444455554444457888999999999888 6677888999999999887 2333333333333333222
Q ss_pred cccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHH
Q 008533 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPV 393 (562)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~ 393 (562)
-+.+ + .-.++.++..|+..++...|-..+..+.|.
T Consensus 380 a~ds----------------------------------~-----------~~v~~~Aeed~~~~las~~P~~~I~~i~~~ 414 (516)
T KOG2956|consen 380 AKDS----------------------------------Q-----------DEVMRVAEEDCLTTLASHLPLQCIVNISPL 414 (516)
T ss_pred HhCC----------------------------------c-----------hhHHHHHHHHHHHHHHhhCchhHHHHHhhH
Confidence 1110 0 014677788888899988887655556565
Q ss_pred HHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCc
Q 008533 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (562)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (562)
+.. .| ...-.+++..+..+.+... +.+...++.+.|.+++..++.+..||.+|+++|-.+...++. +.
T Consensus 415 Ilt----~D---~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~----~~ 483 (516)
T KOG2956|consen 415 ILT----AD---EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM----EE 483 (516)
T ss_pred Hhc----Cc---chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH----Hh
Confidence 543 34 4555666778899998885 677889999999999999999999999999999999888762 13
Q ss_pred chhhHHHHHHH
Q 008533 473 GREQFEKVLMG 483 (562)
Q Consensus 473 ~~~~~~~il~~ 483 (562)
+.+|++++-..
T Consensus 484 mePhL~~Lt~s 494 (516)
T KOG2956|consen 484 MEPHLEQLTSS 494 (516)
T ss_pred hhhHhhhccHH
Confidence 56776655433
No 94
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.26 E-value=4.3e-05 Score=66.27 Aligned_cols=133 Identities=18% Similarity=0.319 Sum_probs=103.1
Q ss_pred ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHH
Q 008533 144 DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYL 223 (562)
Q Consensus 144 ~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l 223 (562)
+|.+|..++.+++.++..++.. ++..+|.+...|.|+++.||+.|+.++..++.... ...-+.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~------------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~---ik~k~~l~ 65 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL------------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM---IKVKGQLF 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH------------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc---eeehhhhh
Confidence 4678999999999999988863 56788999999999999999999999999886421 11223344
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHHHHhhcC-----CCChhHHHHHhhhHHHhhc
Q 008533 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~l~~i~~~~~~~~~-----~~~~~v~~~a~~~l~~~~~ 291 (562)
..+...+.|+++++|..+..+|..+... .+..+.+++.+++..+-.... ..+.+-|...+.++.....
T Consensus 66 ~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 66 SRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 5666667899999999999999999888 677777777777766555433 3456667788888887766
No 95
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.26 E-value=2.7e-06 Score=68.80 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=84.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH-HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (562)
+++.+.+.+.+.++.+|..++++++.++...+.. ...+.. .+++.+++.+.+++++++..|+++|++++...+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDN-----IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 6778888888989999999999999999763321 233344 8889999999999999999999999999876533
Q ss_pred cccccH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008533 513 ELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 513 ~~~~~l-~~il~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (562)
....+. ..+++.|...+...+...++.++.++..++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222223 347778888888777777778888887764
No 96
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.25 E-value=1.4e-05 Score=60.53 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=66.1
Q ss_pred HHHHHHHH-cCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcC
Q 008533 391 MPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG 469 (562)
Q Consensus 391 ~~~l~~~l-~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (562)
+|.+.+.+ ++++ |.+|..++.+|+.+. -+.++|.+...++|+++.||.+|++++|++..
T Consensus 1 i~~L~~~l~~~~~---~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPD---PQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSS---HHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCC---HHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 35666666 6777 999999999999332 22568888888899999999999999998853
Q ss_pred CCcchhhHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 008533 470 HQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFA 504 (562)
Q Consensus 470 ~~~~~~~~~~il~~l~~~l~d~-~~~vr~~a~~al~ 504 (562)
+..++.+.+.+.++ +..||..|+.+|+
T Consensus 61 --------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23556666677664 5778999999885
No 97
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.21 E-value=0.0016 Score=67.12 Aligned_cols=275 Identities=17% Similarity=0.224 Sum_probs=169.4
Q ss_pred HhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 179 NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 179 ~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
..++...+..+. +..+-+|..|+.++..++. +..+.+..+.+++.+.++..+.+.++....+++|+..+...+++-.
T Consensus 489 ~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a 566 (1005)
T KOG2274|consen 489 QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA 566 (1005)
T ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh
Confidence 334444444443 3456789999999988873 4445667788899999998888889999999999999998888754
Q ss_pred hhHHHHHHHHHhh--cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCC
Q 008533 258 PHLRNLFEYMLQV--NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (562)
Q Consensus 258 ~~l~~i~~~~~~~--~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (562)
..-..+.|++... ....|+.+...+-+++..++..+ ...+++...++|.++.-|....+..
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~---~~~g~m~e~~iPslisil~~~~~~~-------------- 629 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA---ANYGPMQERLIPSLISVLQLNADKA-------------- 629 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---HhhcchHHHHHHHHHHHHcCccccc--------------
Confidence 4334566665554 23456677888888888877642 2344566677777776665332100
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcC-CCCCCchhHH
Q 008533 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSA-SGDEAWKDRE 410 (562)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-~~~~~~~~r~ 410 (562)
.......+.+.|..+....+. .+....+|.+.++.-+ +| -..-.
T Consensus 630 ----------------------------~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD---~~tlQ 678 (1005)
T KOG2274|consen 630 ----------------------------PAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDD---HETLQ 678 (1005)
T ss_pred ----------------------------CchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCC---hHHHH
Confidence 001234466777766666543 3455677777776554 34 56666
Q ss_pred HHHHHHHHHhhcchhhhh-----h--hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHH
Q 008533 411 AAVLALGAIAEGCIKGLY-----P--HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 411 aal~~l~~i~~~~~~~~~-----~--~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~ 483 (562)
.|--||..+.....+.+. + .+..++..+-..|+ |++-..++..+|++...+.... +....+.+++|+..
T Consensus 679 ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd---p~~sds~a~~VG~lV~tLit~a-~~el~~n~d~IL~A 754 (1005)
T KOG2274|consen 679 NATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD---PETSDSAAAFVGPLVLTLITHA-SSELGPNLDQILRA 754 (1005)
T ss_pred hHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC---CccchhHHHHHhHHHHHHHHHH-HHHhchhHHHHHHH
Confidence 777777777765432221 1 13345555554443 3444445556777655433221 12356778899999
Q ss_pred HHHHhccC-CHHHHHHHHHHHHHHH
Q 008533 484 LLKRILDT-NKRVQEAACSAFATLE 507 (562)
Q Consensus 484 l~~~l~d~-~~~vr~~a~~al~~l~ 507 (562)
+++.|+.. ..+|-..-...+..+.
T Consensus 755 visrmq~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 755 VISRLQQAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99888753 3455444555555443
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00044 Score=62.77 Aligned_cols=179 Identities=16% Similarity=0.120 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC
Q 008533 113 VGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (562)
Q Consensus 113 ~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (562)
...++-.+++.. +..-.|+++|.|...+..++..++..++..++.+.+++...-.++ +....-.++++.++.++..
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVse---illvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSE---ILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHH---HHHHhhhhHHHHHHHHHcC
Confidence 455666666654 446679999999999999988899999999999999887532211 0011236789999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhHHhchHH-HHH--HHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHH
Q 008533 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQ-YLQ--GLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYM 267 (562)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~-~l~--~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~ 267 (562)
.+.+|.++|++.+..+..+ |..+...++. ++. .+.++...-+.-.|..+++.+.++....++.....-+ .++..+
T Consensus 140 eddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlL 218 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLL 218 (524)
T ss_pred CcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHH
Confidence 9999999999999987764 2222111110 000 0111111123445677777787777776665433222 456666
Q ss_pred HhhcCC-CChhHHHHHhhhHHHhhccccc
Q 008533 268 LQVNKD-TDDDVALEACEFWHSYFEAQLP 295 (562)
Q Consensus 268 ~~~~~~-~~~~v~~~a~~~l~~~~~~~~~ 295 (562)
..-++. .|.-|+..+++....+++.+..
T Consensus 219 eaElkGteDtLVianciElvteLaeteHg 247 (524)
T KOG4413|consen 219 EAELKGTEDTLVIANCIELVTELAETEHG 247 (524)
T ss_pred HHHhcCCcceeehhhHHHHHHHHHHHhhh
Confidence 655555 5566788999999999887433
No 99
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0013 Score=65.48 Aligned_cols=252 Identities=17% Similarity=0.221 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhH
Q 008533 13 GFNEICRLLEQQI-SPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (562)
Q Consensus 13 ~~~~l~~~l~~~~-s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~ 91 (562)
.+.+|..+-..+. +.|.+ .|.+||+.|.++..+|+++.-|..++.+ +..+.....|+..|-+.+..+- .++-++|
T Consensus 3 sLaqLe~lCk~LY~s~D~~-~R~~AE~~L~e~s~speclskCqlll~~--gs~pYs~mlAst~L~Klvs~~t-~lpl~qr 78 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPT-ARHRAEKALAELSESPECLSKCQLLLER--GSYPYSQMLASTCLMKLVSRKT-PLPLEQR 78 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHcCCC-CCcHHHH
Confidence 3444444444443 46777 9999999999999999999999888886 7788888889988888887754 6888999
Q ss_pred HHHHHHHhhhhhCC----chHHHHHHHHHHHHHHHhcCc--C----chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhc
Q 008533 92 QYIKSELLPCLGAA----DRHIRSTVGTIVSVVVQLGGI--A----GWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (562)
Q Consensus 92 ~~i~~~ll~~l~~~----~~~vr~~~~~~i~~i~~~~~~--~----~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 161 (562)
-.|++-+++.+... .+.|...+++.++.+.+..+. + .+-+.+..+.+.++.++..+...++.+|..+..+
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLvqe 158 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLVQE 158 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 99999999999752 677888999999999987642 1 3467888999999998888888899999998887
Q ss_pred chhccccc----CCC---CC-cchhHhhHHHHHHhhcCC------CH-------HHHHHHHHHHH-HHHhh---------
Q 008533 162 IPQVLDSD----VPG---LA-ECPINIFLPRLLQFFQSP------HT-------SLRKLSLGSVN-QFIML--------- 210 (562)
Q Consensus 162 ~~~~~~~~----~~~---~~-~~~~~~il~~l~~~l~~~------~~-------~vr~~al~~l~-~~~~~--------- 210 (562)
....-..+ .+. -| +..+-+++..-++.+++. +. .+.+.++.|+. .++..
T Consensus 159 mN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEssed~ 238 (1082)
T KOG1410|consen 159 MNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESSEDL 238 (1082)
T ss_pred hhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccccccc
Confidence 64321100 000 11 233444555545555432 11 12334444443 12211
Q ss_pred ----chhhHHhch--HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh-----hhHHHHHHHHH
Q 008533 211 ----MPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE-----PHLRNLFEYML 268 (562)
Q Consensus 211 ----~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~-----~~l~~i~~~~~ 268 (562)
+|......+ ...++.++.+...-.+..-..++.||..++......|. .|+..++.-+.
T Consensus 239 ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk 307 (1082)
T KOG1410|consen 239 CTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVK 307 (1082)
T ss_pred cceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111111111 13456666666665677788899999988876544432 35555554443
No 100
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.014 Score=59.76 Aligned_cols=255 Identities=15% Similarity=0.131 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhhc-CCC-hHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHhhcc----CC--hhhHHHHHHHHhhh
Q 008533 32 DKSQIWQQLQQYSQ-FPD-FNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYKS----MS--PSNQQYIKSELLPC 101 (562)
Q Consensus 32 ~r~~A~~~L~~~~~-~~~-~~~~l~~il~~~~--~~~~~~R~~a~~~lk~~i~~~w~~----l~--~~~~~~i~~~ll~~ 101 (562)
+|-.||.-+..+-. ..+ ..+.+...+.+.. .....+..+-+.++|..+...... +. -+....+.+.++.-
T Consensus 413 lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpE 492 (978)
T KOG1993|consen 413 LRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPE 492 (978)
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHH
Confidence 78888888877443 222 3455566553321 123344445566666665332211 00 12344555566554
Q ss_pred hhC---CchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcc
Q 008533 102 LGA---ADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (562)
Q Consensus 102 l~~---~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~ 176 (562)
+.. ....+||..+-+++.=+....+ +.-|-+-..+.+++++. |.-+|.++..++...++++...-+ .|.+
T Consensus 493 l~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d-----sFlp 567 (978)
T KOG1993|consen 493 LANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED-----SFLP 567 (978)
T ss_pred hhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh-----hhhh
Confidence 432 3567899999999988775422 34455667788888886 677888999999998888754311 1234
Q ss_pred hhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhhHHhchHHH---HHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 177 PINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQY---LQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 177 ~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
+.+.+...+++.+.. +.-+.|...+..++.++....+.+.+....+ ++.+..... ..+-.|.+++..|..++...
T Consensus 568 ~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~al 646 (978)
T KOG1993|consen 568 YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNAL 646 (978)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHh
Confidence 556666777777765 3457888999999999887776665554444 444444332 44667888888888887654
Q ss_pred c---cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 253 P---SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 253 ~---~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
+ ..+.+.+-.+++......+-.+--.-.-+++.|.+....
T Consensus 647 g~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 647 GAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred ccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 3 334444444444333222212222344578999988765
No 101
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.0024 Score=61.23 Aligned_cols=443 Identities=13% Similarity=0.145 Sum_probs=230.5
Q ss_pred CCCHHHHHHHHHHHHHHHH--------HhhccCChhhHHHHHHH-HhhhhhCCchHHHHHHHHHHHHHHHhc--------
Q 008533 62 GKSVEIRQAAGLLLKNNLR--------TAYKSMSPSNQQYIKSE-LLPCLGAADRHIRSTVGTIVSVVVQLG-------- 124 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~--------~~w~~l~~~~~~~i~~~-ll~~l~~~~~~vr~~~~~~i~~i~~~~-------- 124 (562)
++...+|+-|..++-..++ ..|..+-++.-+.=-+. +.-.|+|++++.|.-+.++.+.|....
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~ 86 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAE 86 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 5678889988887766553 35765433332211122 233678999999998888888886431
Q ss_pred --CcCch-----------HHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc
Q 008533 125 --GIAGW-----------LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (562)
Q Consensus 125 --~~~~w-----------~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (562)
++..+ -++...|+-.+. ..++.+.-..+.||..++...+..-.. -..+.+++..+-..+.
T Consensus 87 ~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~------~~~~~~~~~~ik~~i~ 160 (728)
T KOG4535|consen 87 DTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLK------LSLLTKVWNQIKPYIR 160 (728)
T ss_pred ccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHH------HHHHHHHHHHHHHHhh
Confidence 12221 111222333332 234566667888888888876653111 1245666677778888
Q ss_pred CCCHHHHHHHHHHHHHHHhhc---hhh---HH----------hc--hHHHHHHHhh------------------------
Q 008533 191 SPHTSLRKLSLGSVNQFIMLM---PSA---LF----------VS--MDQYLQGLFL------------------------ 228 (562)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~---~~~---~~----------~~--~~~~l~~l~~------------------------ 228 (562)
+.++.|+..++..++.++... |+. +. ++ -+.+.+.+..
T Consensus 161 ~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~ 240 (728)
T KOG4535|consen 161 HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRL 240 (728)
T ss_pred cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeee
Confidence 999999999999999888642 210 00 00 0111111110
Q ss_pred --------------------hccC--CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhH
Q 008533 229 --------------------LSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFW 286 (562)
Q Consensus 229 --------------------~~~~--~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l 286 (562)
.++. .-..+|-.+++.|..++.+.+ ....|+-++...+...+.+.++++...+..++
T Consensus 241 ~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll 319 (728)
T KOG4535|consen 241 CISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLL 319 (728)
T ss_pred eeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence 0000 012456666666666655432 22345555555555666777777777666655
Q ss_pred HHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhc
Q 008533 287 HSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWN 366 (562)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~ 366 (562)
..+... ....+.+. -...+. ...|+|......+..+.. .| ....+
T Consensus 320 ~~lg~~-----lv~~~~P~--------~~k~~~------------------q~~~fw~~~l~~p~~~~~-YD---s~~~T 364 (728)
T KOG4535|consen 320 EELGTG-----LIQQYKPD--------STKAPD------------------QRAPFWTMMLNGPLPRAL-YD---SEHPT 364 (728)
T ss_pred HHHHHH-----HhhhcCCC--------cccchh------------------hhccHHHHHccCCChhhh-hh---hcCCC
Confidence 554332 00000000 000000 001111111110100000 00 11124
Q ss_pred HhhhHHHHHHHHHhhh----ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc-hhhhhhhHHHHHHHHhhh
Q 008533 367 LRKCSAAALDVLSNVF----GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPL 441 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~----~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~-~~~~~~~l~~~~~~l~~~ 441 (562)
..-+...++..++..- ++. -....+.+..... |+++--+|.+|+.+++...-.. ......++......++..
T Consensus 365 l~~s~Cdals~i~~~~f~~lpn~-~~T~~~~Fl~GC~--d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s 441 (728)
T KOG4535|consen 365 LQASACDALSSILPEAFSNLPND-RQTLCITFLLGCN--DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS 441 (728)
T ss_pred chhHHHHHHhhcCchhhcCCCCc-chhhhHHHHhccc--chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence 4444555555554322 221 1123344433333 2233678899999888766433 233356677777888889
Q ss_pred cCCCChhHHHHHHHHHHHhHHHHhhhcCC-C-cchhhHHHHHHHHHHHhc--c-CCHHHHHHHHHHHHHHHHHccccccc
Q 008533 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGH-Q-NGREQFEKVLMGLLKRIL--D-TNKRVQEAACSAFATLEEEAAEELAP 516 (562)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~-~~~~~~~~il~~l~~~l~--d-~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (562)
+.|+.-.+|..+.|++|++...+...+.+ . ....+....+..++..-. + .+.+|+.+|..+|+++.........+
T Consensus 442 l~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~ 521 (728)
T KOG4535|consen 442 LEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP 521 (728)
T ss_pred hhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc
Confidence 99999999999999999999877543211 0 112223333333333211 1 25799999999999998765433333
Q ss_pred cHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHH
Q 008533 517 RLEIILQHLMMAFGKY-----QRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 517 ~l~~il~~L~~~l~~~-----~~~~~~~~~~~l~~l~~ 549 (562)
-+..+++.=...+-.. .-+++.+++=++|.+-+
T Consensus 522 ~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 522 TFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred cHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 3344433322222111 12345566666666543
No 102
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.013 Score=59.04 Aligned_cols=272 Identities=13% Similarity=0.169 Sum_probs=146.9
Q ss_pred HHHHHHHHhhhhhC--CchHHHHHHHHHHHHHHHhcC----cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 91 QQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGG----IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 91 ~~~i~~~ll~~l~~--~~~~vr~~~~~~i~~i~~~~~----~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
.+..-.-+-++|.+ ....||..+|.|+=.+.+..+ ++.| .+.+..++.+.+-.+.-++...+..+++..++
T Consensus 144 ~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W---~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 144 AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEW---AQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhH---HHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 33444445566654 467899999999999998853 3455 45666778887777777888888888888776
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcC-------------CCHHHHHHHHHHHHHHHhhch-hhHHhchHHHHHHHhhhc
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQS-------------PHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLS 230 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~-------------~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~ 230 (562)
.+... +...+..+...... +.+-+....+..+..+ .... +.....+..+++.+++..
T Consensus 221 ~yk~~--------~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~ 291 (938)
T KOG1077|consen 221 SYKTC--------LPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTRARLNEVLERILNKA 291 (938)
T ss_pred HHhhh--------HHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHHHHHHHHHHHHHhcc
Confidence 54321 12222222222211 3444555555554443 1000 011112233344444433
Q ss_pred cC----CCH---HHHHHH-HHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhh
Q 008533 231 ND----PSA---EVRKLV-CAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (562)
Q Consensus 231 ~~----~~~---~~~~~~-~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 302 (562)
++ .+. ..+.++ ++++..+....++. +.+..-+..+...+.+.+.-+|..|+|-+..++..+.....++-+
T Consensus 292 ~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~--~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h 369 (938)
T KOG1077|consen 292 QEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP--ELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH 369 (938)
T ss_pred ccCccccchHhhhhHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH
Confidence 31 111 112222 33333332222221 122233333344456677778888888888887775555667777
Q ss_pred hhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh
Q 008533 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (562)
Q Consensus 303 l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~ 382 (562)
.+.++..+-. +. .-++|+.|.+.|-.++..-
T Consensus 370 ~d~Ii~sLkt-----er--------------------------------------------DvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 370 QDTIINSLKT-----ER--------------------------------------------DVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHhcc-----cc--------------------------------------------chHHHHHHHHHHHHHhchh
Confidence 6665555410 00 1258888888888887654
Q ss_pred ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH
Q 008533 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (562)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l 431 (562)
.. ..+..-+.+++.+.+ +..|+.-..-.+-+++....++.=|+
T Consensus 401 Na---k~IV~elLqYL~tAd---~sireeivlKvAILaEKyAtDy~WyV 443 (938)
T KOG1077|consen 401 NA---KQIVAELLQYLETAD---YSIREEIVLKVAILAEKYATDYSWYV 443 (938)
T ss_pred hH---HHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 32 244455555556666 77787766666666665543333333
No 103
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.11 E-value=2e-05 Score=59.61 Aligned_cols=86 Identities=19% Similarity=0.310 Sum_probs=67.3
Q ss_pred HHHHhhhc-CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccc
Q 008533 435 VAFLIPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (562)
Q Consensus 435 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~ 513 (562)
+|.+++.+ +|+++.||..|++++|++.. +.+++.+...++|+++.||..|+.+|+.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------------PEAIPALIELLKDEDPMVRRAAARALGRIGD----- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----
Confidence 46777878 89999999999999995532 2567778888899999999999999997732
Q ss_pred ccccHHHHHHHHHHHHhhhhhhH-HHHHHHHHH
Q 008533 514 LAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIG 545 (562)
Q Consensus 514 ~~~~l~~il~~L~~~l~~~~~~~-~~~~~~~l~ 545 (562)
+..++.|.+.+.+.++.. +..+..+||
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 667778888888765554 457888775
No 104
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.01 E-value=0.0049 Score=61.15 Aligned_cols=305 Identities=15% Similarity=0.162 Sum_probs=171.5
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhh----hccC-CCHHHHHHHHHHHHHHHh
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL----LSND-PSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~----~~~~-~~~~~~~~~~~~L~~l~~ 250 (562)
+....++..++..+..+...--.-.+||+..++....+.+.+....+++.+.. ..++ .+|..-+-.+++++.++.
T Consensus 22 p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 22 PFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 45677888888888653222222334444444444443334444444443333 3333 457888889999988877
Q ss_pred hCc----cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhh
Q 008533 251 VRP----SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEA 326 (562)
Q Consensus 251 ~~~----~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~ 326 (562)
... +.+...-+.++|.+...++..-.+..-++++.++.+.+... ...+.+.+..+++.++.- ..|+.
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~-~~~~p~~y~~L~~~Ll~p--------~lWe~ 172 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRP-SSPLPDAYKQLFPPLLSP--------ALWER 172 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS---S--TTTGGGHHHHTSG--------GGGGS
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHcCc--------chhcc
Confidence 643 33444556777877777766556677888888888877622 234555666777776521 12210
Q ss_pred hhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-----chhhhhHHHHHHHHcCC
Q 008533 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-----EILPTLMPVIQAKLSAS 401 (562)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-----~~~~~l~~~l~~~l~~~ 401 (562)
. + ++ .+....|..+...-+. .-+..++..++.++.+.
T Consensus 173 ~------------------------g-------------ni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 173 R------------------------G-------------NI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp T------------------------T-------------TH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred C------------------------C-------------Cc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 0 0 12 2233444444444333 23456777788888875
Q ss_pred CCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhh-----cCCCcch
Q 008533 402 GDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQD-----IGHQNGR 474 (562)
Q Consensus 402 ~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~ 474 (562)
. .-+-|+..|..+...++ +.+.+|+++++..++.+|+ .+.+..+...+..++-++...+.. ++ ....
T Consensus 215 ~-----~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id-~IQ~ 288 (435)
T PF03378_consen 215 A-----NDHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTID-SIQP 288 (435)
T ss_dssp T-----CHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHH-TTST
T ss_pred C-----cchHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HhcC
Confidence 3 23568889999999886 4679999999999999997 445555555555555554332211 00 1123
Q ss_pred hhHHHHHHHH-HHHhcc-CCHHHHHHHHHHHHHHHHHcccc---ccccHHHHHHHHHHHHhhhh
Q 008533 475 EQFEKVLMGL-LKRILD-TNKRVQEAACSAFATLEEEAAEE---LAPRLEIILQHLMMAFGKYQ 533 (562)
Q Consensus 475 ~~~~~il~~l-~~~l~d-~~~~vr~~a~~al~~l~~~~~~~---~~~~l~~il~~L~~~l~~~~ 533 (562)
..+..++..+ +..++. ..+.-|..++-++.+++..+... .......+++.|++++..+.
T Consensus 289 glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~ 352 (435)
T PF03378_consen 289 GLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPP 352 (435)
T ss_dssp THHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCc
Confidence 3344555443 334433 23555777888888887655332 34567888889999888764
No 105
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=98.00 E-value=0.0033 Score=57.76 Aligned_cols=250 Identities=18% Similarity=0.168 Sum_probs=155.5
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhh
Q 008533 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA 214 (562)
Q Consensus 135 ~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~ 214 (562)
.|-..+.++++..|..|+.+|..+++.++....+ ...++-++..+...+.| ...-..+++.+..++.. ...
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~------~~ev~~L~~F~~~rl~D--~~~~~~~l~gl~~L~~~-~~~ 73 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLS------RQEVQVLLDFFCSRLDD--HACVQPALKGLLALVKM-KNF 73 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhcc------HHHHHHHHHHHHHHhcc--HhhHHHHHHHHHHHHhC-cCC
Confidence 4566788999999999999999999998864322 23456666666666643 33344447777777642 211
Q ss_pred HHhchHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcC-CCChhHHHHHhhhHHHhhc
Q 008533 215 LFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-DTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 215 ~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~-~~~~~v~~~a~~~l~~~~~ 291 (562)
-......+++.+++... .--...|..+++.+..+.+++...+...-+.++..+++.+. ..||.--..+++.+..+..
T Consensus 74 ~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 74 SPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 12224455666665332 22257899999999999988777665555666666666544 4677777778887777766
Q ss_pred cccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhH
Q 008533 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (562)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (562)
. +. +.++.+.++.++.-+...+ --..++|. .....
T Consensus 154 ~---~~-~~~~~e~lFd~~~cYFPI~-----------------------------F~pp~~dp------------~~IT~ 188 (262)
T PF14500_consen 154 E---FD-ISEFAEDLFDVFSCYFPIT-----------------------------FRPPPNDP------------YGITR 188 (262)
T ss_pred h---cc-cchhHHHHHHHhhheeeee-----------------------------eeCCCCCC------------CCCCH
Confidence 4 11 2444555555543221110 00000110 01112
Q ss_pred HHHHHHHHhhhc--cchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhh
Q 008533 372 AAALDVLSNVFG--DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPL 441 (562)
Q Consensus 372 ~~~l~~l~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~ 441 (562)
.+.-..|-..+. ..+.+..+|.+.+.+.++. ..+|.-++.+|...++..+ +.+.+|...++..+...
T Consensus 189 edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~---~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~E 258 (262)
T PF14500_consen 189 EDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTS---PSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFE 258 (262)
T ss_pred HHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 222233333332 3555788999999999887 8899999999998888764 56788888888876554
No 106
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.00 E-value=0.00028 Score=74.17 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=148.0
Q ss_pred cchhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHH
Q 008533 362 VNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF 437 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~ 437 (562)
+..|.-|..|.+.+......-+. .....+...+.-...+.+ ..+-.-++.+|..++.+++..+.+|...+.|.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN---~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~ 340 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDAN---INVVMLAAQILELIAKKLRPLFRKYAKNVFPS 340 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcc---hhHHHHHHHHHHHHHHhcchhhHHHHHhhcch
Confidence 45688888877776666554441 122233344444455666 88888899999999999998899999999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc--ccc
Q 008533 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE--ELA 515 (562)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~--~~~ 515 (562)
++..+.+..+.+|.++..++..++... .+..+++.++..+++.+|.++......+.+.+...+. ...
T Consensus 341 lld~lkekk~~l~d~l~~~~d~~~ns~-----------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~ 409 (815)
T KOG1820|consen 341 LLDRLKEKKSELRDALLKALDAILNST-----------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK 409 (815)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence 999999999999999999888888732 3567788888899999999999999999999988753 344
Q ss_pred ccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 516 PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 516 ~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
.-+..++..+.....+.+..++.+++++++.+....|+..++-|+
T Consensus 410 ~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 410 ETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred hhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 567888888899888888888999999999999999998776554
No 107
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.007 Score=61.70 Aligned_cols=87 Identities=21% Similarity=0.196 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHHhhhccchhh-hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 008533 368 RKCSAAALDVLSNVFGDEILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~ 446 (562)
+..+...|..++...+....| ..+.++-..+-=.+ ..+|.+|..+++.+..+.. .+ .+.+...+..++.|++
T Consensus 444 ~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn---~ivRaaAv~alaKfg~~~~-~l---~~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 444 TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILEN---AIVRAAAVSALAKFGAQDV-VL---LPSILVLLKRCLNDSD 516 (865)
T ss_pred hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhh---hhhHHHHHHHHHHHhcCCC-Cc---cccHHHHHHHHhcCch
Confidence 334666677776655432222 22233322222223 6788899888888884332 11 2334455666778888
Q ss_pred hhHHHHHHHHHHHhH
Q 008533 447 PLIRSISCWTLSRFS 461 (562)
Q Consensus 447 ~~vr~~a~~~l~~l~ 461 (562)
..||.+|...+..+-
T Consensus 517 devRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 517 DEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899988887777665
No 108
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.99 E-value=0.0011 Score=63.41 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=139.4
Q ss_pred HhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchH----HHHHHHHHHhcc-CChhHHhHHHHHH
Q 008533 81 TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWL----ELLQALVTCLDS-NDINHMEGAMDAL 155 (562)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~----~ll~~l~~~l~~-~~~~~~~~al~~l 155 (562)
..|...+-+....+++.+.+.=+++...-|+.+-.-|-.+.......-|. +++-.+.+.+++ .+...+..|+.+|
T Consensus 275 ~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL 354 (516)
T KOG2956|consen 275 DQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVL 354 (516)
T ss_pred hhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHH
Confidence 34554444555666655554444544445555544344444333345565 566677788877 6788899999999
Q ss_pred HHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHH-HHHHHHhhchhhHHhchHHHHHHHhhhccCCC
Q 008533 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG-SVNQFIMLMPSALFVSMDQYLQGLFLLSNDPS 234 (562)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 234 (562)
+.+|+.-+..+.. ..+..+..+++.-.+.+.+|-..|-+ |+..+....|..- +..+-+.++. .|
T Consensus 355 ~~ml~~Q~~~l~D--------stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt----~D 419 (516)
T KOG2956|consen 355 REMLTNQPARLFD--------STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT----AD 419 (516)
T ss_pred HHHHHhchHhhhc--------hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc----Cc
Confidence 9999988776532 34556667777778877665555554 5555555555322 2222233322 46
Q ss_pred HHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHH
Q 008533 235 AEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (562)
Q Consensus 235 ~~~~~~~~~~L~~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~ 307 (562)
......+++.+.++++... +.+.+.++++.|.+++...+.+..||..|.-++.++... ...+.+.||+.+|-
T Consensus 420 ~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~-vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 420 EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR-VGMEEMEPHLEQLT 492 (516)
T ss_pred chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH-HhHHhhhhHhhhcc
Confidence 6777888999999888654 667788899999999998988999999999998888764 12256777776653
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.99 E-value=0.023 Score=57.37 Aligned_cols=141 Identities=14% Similarity=0.137 Sum_probs=86.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH
Q 008533 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (562)
Q Consensus 53 l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l 132 (562)
...||... ..+...+++|+..+-+++ ... |+..+.-.+.++.++.|++..||..+...|..+++.. ++..+.+
T Consensus 25 y~~il~~~-kg~~k~K~Laaq~I~kff----k~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kv 97 (556)
T PF05918_consen 25 YKEILDGV-KGSPKEKRLAAQFIPKFF----KHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKV 97 (556)
T ss_dssp HHHHHHGG-GS-HHHHHHHHHHHHHHH----CC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH
T ss_pred HHHHHHHc-cCCHHHHHHHHHHHHHHH----hhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHH
Confidence 34444432 457889999998655554 433 3455556678888999999999999999999999753 4566889
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
...|.++++++++..+...=.+|..+...-+.. .+..++..+... .+.+..+|..+++.+..-+..++
T Consensus 98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-----------tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-----------TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCc
Confidence 999999999988876666666666666543321 122222222211 24577899999999876665544
No 110
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.98 E-value=0.0022 Score=62.96 Aligned_cols=242 Identities=15% Similarity=-0.001 Sum_probs=144.0
Q ss_pred HHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 130 LELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 130 ~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
+..++.+...+. ++++.++..+...+... . -...+..++..+.+.++.||..+.++|+.+-
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----~--------------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----E--------------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----C--------------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 445566666664 45566655444443211 0 0223777888999999999999999998542
Q ss_pred hhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHH
Q 008533 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (562)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (562)
. +.....+...+++.++.+|..++..+...-. + -.+.+...+++.++.||..|+..++.
T Consensus 115 ~----------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---~--------~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 115 G----------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH---D--------PGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred c----------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---C--------hHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 2 2234455556677888899888866655111 1 12233445568889999999999888
Q ss_pred hhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHh
Q 008533 289 YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLR 368 (562)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r 368 (562)
+..... . +.|... +. +. +-.+|
T Consensus 174 l~~~~a----~----~~L~~a----l~-------------------------------------d~---------~~~VR 195 (410)
T TIGR02270 174 LPRRLS----E----STLRLY----LR-------------------------------------DS---------DPEVR 195 (410)
T ss_pred hccccc----h----HHHHHH----Hc-------------------------------------CC---------CHHHH
Confidence 865411 1 111111 11 00 01488
Q ss_pred hhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChh
Q 008533 369 KCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPL 448 (562)
Q Consensus 369 ~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~ 448 (562)
..|..++..++. +...+.+........ +-.+......++.. + -+..++.+...++|+.
T Consensus 196 ~aA~~al~~lG~-------~~A~~~l~~~~~~~g---~~~~~~l~~~lal~--~--------~~~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 196 FAALEAGLLAGS-------RLAWGVCRRFQVLEG---GPHRQRLLVLLAVA--G--------GPDAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHHHHHHHcCC-------HhHHHHHHHHHhccC---ccHHHHHHHHHHhC--C--------chhHHHHHHHHhcChh--
Confidence 888888855532 133344444334444 44444433333322 1 1146677777777754
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
+|..+++++|.+.. +..++.++..+.|+ .++..|..++..+.
T Consensus 254 vr~~a~~AlG~lg~---------------p~av~~L~~~l~d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 254 TRREALRAVGLVGD---------------VEAAPWCLEAMREP--PWARLAGEAFSLIT 295 (410)
T ss_pred hHHHHHHHHHHcCC---------------cchHHHHHHHhcCc--HHHHHHHHHHHHhh
Confidence 99999999997764 13456667777764 48999999998886
No 111
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.033 Score=57.81 Aligned_cols=189 Identities=17% Similarity=0.219 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCC-----hhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHH
Q 008533 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND-----INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (562)
Q Consensus 109 vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~-----~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~ 183 (562)
-|+..+..+-......+.+-..-+...+-+.+.+++ +...++.+.++..+.+..+... ...+|
T Consensus 440 YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~------------~~~i~ 507 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE------------STWIP 507 (982)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch------------hHHHH
Confidence 456566555555544444455666777888887654 5667777888888888776542 33466
Q ss_pred HHHHhhcC-----CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhh
Q 008533 184 RLLQFFQS-----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (562)
Q Consensus 184 ~l~~~l~~-----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 258 (562)
.+++...+ .++..-..+...++.+..+..++.. .++..++.+++.+.. ++.-..+...+-++++..++.+.|
T Consensus 508 rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~-~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~p 584 (982)
T KOG2022|consen 508 RLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM-YLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDP 584 (982)
T ss_pred HHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc-ccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCch
Confidence 66665543 3677788888888888877643211 234456677766653 333445566688999999999999
Q ss_pred hHHHHHHHHHhhcCC--CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh
Q 008533 259 HLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 259 ~l~~i~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
|.+.++..+...+.. -.+..|...+..++.+...- ..+....|+..++..++..
T Consensus 585 y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~q 640 (982)
T KOG2022|consen 585 YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQ 640 (982)
T ss_pred HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHH
Confidence 999999887765432 23556777788888776651 1445556666666666543
No 112
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.96 E-value=0.0055 Score=59.44 Aligned_cols=215 Identities=13% Similarity=0.170 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhcc----C-CCHHHHHHHHHHHHHHHhhC--ccch--hhhHHHHHH
Q 008533 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN----D-PSAEVRKLVCAAFNLLIEVR--PSFL--EPHLRNLFE 265 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----~-~~~~~~~~~~~~L~~l~~~~--~~~~--~~~l~~i~~ 265 (562)
.++..+++++.-+...-.+.+.++++.+++.+.+.+. . ....+...++..|..+++.. ...+ .+++++|++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 5677788888777665555666666666666555442 1 12345556777777766532 1233 456776655
Q ss_pred HHH-hh----------------------cC-CCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhH
Q 008533 266 YML-QV----------------------NK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (562)
Q Consensus 266 ~~~-~~----------------------~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~ 321 (562)
-++ -. .. +.....|..|.+++..+++. ..+.+.+.+...+..++.....
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~--~~~~v~~i~~~~i~~~l~~y~~----- 263 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK--FEKQVTSILMQYIQQLLQQYAS----- 263 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHhh-----
Confidence 331 10 11 11234578889999999876 3333444333333333321110
Q ss_pred hhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhc-----c-ch--hhhhHHH
Q 008533 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG-----D-EI--LPTLMPV 393 (562)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-----~-~~--~~~l~~~ 393 (562)
+ ...+|.-+..|...+..++.... . .+ .-.+..+
T Consensus 264 -----~---------------------------------~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 264 -----N---------------------------------PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp ---------------------------------------TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred -----C---------------------------------CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 0 01246667778888888876541 1 10 0122223
Q ss_pred HHH----HHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 008533 394 IQA----KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (562)
Q Consensus 394 l~~----~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l 457 (562)
+.+ -++.+.+..+-.|..|+..+..+-...+ .+.+..++|.+...|.+++..|+.-|+.++
T Consensus 306 f~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222 2331112227788889998888888766 356888999999999999999999887764
No 113
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.95 E-value=0.00084 Score=70.72 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=139.5
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHH
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l 306 (562)
..+.+.++.-|..+++.+...++... +....+...+..++-....|.+-.+...++.++..++.. .....++|...+
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~--lr~~~~~~~~~v 337 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK--LRPLFRKYAKNV 337 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh--cchhhHHHHHhh
Confidence 33446677888999999998888766 333445555555544556777888888999999998876 444567777777
Q ss_pred HHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccch
Q 008533 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (562)
Q Consensus 307 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (562)
+|.++..+... ...+|.++..+++.++...+
T Consensus 338 ~p~lld~lkek----------------------------------------------k~~l~d~l~~~~d~~~ns~~--- 368 (815)
T KOG1820|consen 338 FPSLLDRLKEK----------------------------------------------KSELRDALLKALDAILNSTP--- 368 (815)
T ss_pred cchHHHHhhhc----------------------------------------------cHHHHHHHHHHHHHHHhccc---
Confidence 77776554311 12467778888888877443
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh-h-hhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHH
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-G-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~-~-~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
+..+.+.+...+.+.+ ++.|.....++......... . ....+..++|.++...+|.+..||.+|..+++.+...+
T Consensus 369 l~~~~~~I~e~lk~kn---p~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~ 445 (815)
T KOG1820|consen 369 LSKMSEAILEALKGKN---PQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH 445 (815)
T ss_pred HHHHHHHHHHHhcCCC---hhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence 4577888889999888 99999999999988877652 2 24567889999999999999999999999999999887
Q ss_pred hh
Q 008533 465 VQ 466 (562)
Q Consensus 465 ~~ 466 (562)
++
T Consensus 446 Ge 447 (815)
T KOG1820|consen 446 GE 447 (815)
T ss_pred hH
Confidence 64
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.032 Score=56.84 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=165.7
Q ss_pred hhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc--CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
++..+.+-+.+..+|......||+.|..+|..|.+.. .-..-|+++..... ...+|.-++.|+..|...-.+-.-.
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~--~e~DpsCkRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL--TEQDPSCKRNAFLMLFTTDPERALN 206 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH--hccCchhHHHHHHHHHhcCHHHHHH
Confidence 3444555666667778889999999999999999873 12455666665432 3345666666655543322111000
Q ss_pred -ccc---cCCCCCcchhHh-hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHH
Q 008533 166 -LDS---DVPGLAECPINI-FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRK 239 (562)
Q Consensus 166 -~~~---~~~~~~~~~~~~-il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~ 239 (562)
+.+ ..+. +...+.. +++.+.+.. ..++..+..-++|+..+....++... .+....+. -..++...+
T Consensus 207 Yl~~~idqi~~-~~~~LqlViVE~Irkv~-~~~p~~~~~~i~~i~~lL~stssaV~------fEaa~tlv~lS~~p~alk 278 (948)
T KOG1058|consen 207 YLLSNIDQIPS-FNDSLQLVIVELIRKVC-LANPAEKARYIRCIYNLLSSTSSAVI------FEAAGTLVTLSNDPTALK 278 (948)
T ss_pred HHHhhHhhccC-ccHHHHHHHHHHHHHHH-hcCHHHhhHHHHHHHHHHhcCCchhh------hhhcceEEEccCCHHHHH
Confidence 000 0000 0011111 122222211 24566666667777666553321110 01100000 022344444
Q ss_pred HHHHHHHHHHhhCccc----------------hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhh
Q 008533 240 LVCAAFNLLIEVRPSF----------------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (562)
Q Consensus 240 ~~~~~L~~l~~~~~~~----------------~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l 303 (562)
.+..++..++...++. -...+..++--++..+..++-++|..++++...+++... +.
T Consensus 279 ~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----ve--- 351 (948)
T KOG1058|consen 279 AAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----VE--- 351 (948)
T ss_pred HHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----HH---
Confidence 4444444433322211 012233444445566788888999999999988887622 21
Q ss_pred hHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhc
Q 008533 304 PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG 383 (562)
Q Consensus 304 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~ 383 (562)
.++..+-.-+..+ .+.+.++ .-..|..-.+++...+-.++
T Consensus 352 -div~~Lkke~~kT----------------------------------~~~e~d~-----~~~yRqlLiktih~cav~Fp 391 (948)
T KOG1058|consen 352 -DIVQFLKKEVMKT----------------------------------HNEESDD-----NGKYRQLLIKTIHACAVKFP 391 (948)
T ss_pred -HHHHHHHHHHHhc----------------------------------ccccccc-----chHHHHHHHHHHHHHhhcCh
Confidence 2222221111100 0011111 22578888888888888887
Q ss_pred cchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHH
Q 008533 384 DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 384 ~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~ 462 (562)
+. ...+++.+...+.+.+ ...-...+..+....+..++- -..++..++..+. =.++.+...|+|.+|.+++
T Consensus 392 ~~-aatvV~~ll~fisD~N---~~aas~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 392 EV-AATVVSLLLDFISDSN---EAAASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HH-HHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 52 3467788888888877 666666677777777655421 1223444444443 2567788899999999998
Q ss_pred HHh
Q 008533 463 FIV 465 (562)
Q Consensus 463 ~~~ 465 (562)
...
T Consensus 464 ~~~ 466 (948)
T KOG1058|consen 464 GLS 466 (948)
T ss_pred hhH
Confidence 765
No 115
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.033 Score=56.69 Aligned_cols=388 Identities=14% Similarity=0.109 Sum_probs=204.3
Q ss_pred HhhccCChhhHHHHHHHHhhhhh-----------CCchHHHH-------------HHHHHHHHHHHhcCcCchHHHHHHH
Q 008533 81 TAYKSMSPSNQQYIKSELLPCLG-----------AADRHIRS-------------TVGTIVSVVVQLGGIAGWLELLQAL 136 (562)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~-----------~~~~~vr~-------------~~~~~i~~i~~~~~~~~w~~ll~~l 136 (562)
..|.-+.|..+-.|...++..+. |+++.+|+ +++.++-.++.+-++.....+++.+
T Consensus 334 ~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~ 413 (970)
T COG5656 334 QTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFL 413 (970)
T ss_pred hhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 35666666555555555666553 24556775 2344444444444555688888888
Q ss_pred HHHhcc--------CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh-HhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 137 VTCLDS--------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI-NIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 137 ~~~l~~--------~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
...+.. +++...++++..+..+...+.. ..+ ..+ .. .-+++.++..++++..-+|..|+..+..+
T Consensus 414 ~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp-~an----~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 414 LSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSP-AAN----VMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred HHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-Cch-HHH----HHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 888832 1356678899999888773221 110 011 11 22445566677888888999999999888
Q ss_pred HhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHhhcCCCChhHHHHHhhh
Q 008533 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~--~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~ 285 (562)
-...++. ...-.+.+...+.+++.+-.++..+.-++..++.+ ..+.++.|.+.+++-++.....-+-++-...++-
T Consensus 488 eeDfkd~--~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~ 565 (970)
T COG5656 488 EEDFKDN--GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMES 565 (970)
T ss_pred HHhcccc--hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHH
Confidence 4333211 01112233444444555556777776666665543 3456788888888888877666665555555543
Q ss_pred -HHHhhccccchhhHHhhhhHHHHHHH----hhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 008533 286 -WHSYFEAQLPHENLKEFLPRLVPVLL----SNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (562)
Q Consensus 286 -l~~~~~~~~~~~~~~~~l~~l~~~l~----~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d 360 (562)
+..+++ .+.|+.+.+...++ ..++..-+ + .+ |...-.| |
T Consensus 566 fVe~fse------ELspfa~eLa~~Lv~qFlkiaq~l~e---n---s~-----------------------d~~s~vD-D 609 (970)
T COG5656 566 FVEYFSE------ELSPFAPELAGSLVRQFLKIAQSLLE---N---SS-----------------------DTSSVVD-D 609 (970)
T ss_pred HHHHhHH------hhchhHHHHHHHHHHHHHHHHHHHHc---C---Cc-----------------------ccccccc-H
Confidence 233333 34444444444443 22221110 0 00 0000000 1
Q ss_pred ccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHh
Q 008533 361 IVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLI 439 (562)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~ 439 (562)
-..+|...|..+.. .+-|-+.. +. +..++ ..+.|.+-
T Consensus 610 ------KqmaasGiL~T~~s----------------miLSlen~-p~-------------------vLk~le~slypvi~ 647 (970)
T COG5656 610 ------KQMAASGILRTIES----------------MILSLENR-PL-------------------VLKYLEVSLYPVIS 647 (970)
T ss_pred ------HHHHHHHHHHHHHH----------------HHHhcccc-hH-------------------HHHHHHHHHHHHHH
Confidence 12223223322222 11111100 10 01111 11223222
Q ss_pred hhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHcccccc---
Q 008533 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK-RVQEAACSAFATLEEEAAEELA--- 515 (562)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~-~vr~~a~~al~~l~~~~~~~~~--- 515 (562)
-.+.+.-..+-..|+..+..+.-... ...+...++++.+.+++.+..+ ..-..+..++.+++.-.+..+.
T Consensus 648 Filkn~i~dfy~Ea~dildg~tf~sk------eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~ 721 (970)
T COG5656 648 FILKNEISDFYQEALDILDGYTFMSK------EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG 721 (970)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhHHHH------HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence 22333334444555565555433222 1345666777777777777654 4456778888888877654332
Q ss_pred ccHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 516 PRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 516 ~~l~~il~~L~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
-|...+.+.+...+..... +..+.+++.+..++-++++++...|.
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~ 768 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYL 768 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhh
Confidence 2566666666666665544 45667788877777777776655553
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.92 E-value=0.0046 Score=64.61 Aligned_cols=298 Identities=19% Similarity=0.227 Sum_probs=171.4
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
++++.|.+.+.+++...+..++.+|..+..+-.-. .. -.-..++|.+..++.+++ .+..+++++..+...
T Consensus 331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R--~~------mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d 400 (708)
T PF05804_consen 331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELR--SQ------MVSLGLIPKLVELLKDPN--FREVALKILYNLSMD 400 (708)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHH--HH------HHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC
Confidence 35788999999888889999999998887654321 11 133558899999998754 556688888877653
Q ss_pred ch--hhHH--hchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc--cch--hhhHHHHHHHHHhhcCCCChhHHHHH
Q 008533 211 MP--SALF--VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--SFL--EPHLRNLFEYMLQVNKDTDDDVALEA 282 (562)
Q Consensus 211 ~~--~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~--~~~--~~~l~~i~~~~~~~~~~~~~~v~~~a 282 (562)
-. ..+. +.++.+++.+.. .+++.+...++..+..++.... ..+ +..++.++...+ +..++ ..
T Consensus 401 d~~r~~f~~TdcIp~L~~~Ll~---~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~---~~~D~----lL 470 (708)
T PF05804_consen 401 DEARSMFAYTDCIPQLMQMLLE---NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRAL---KTRDP----LL 470 (708)
T ss_pred HhhHHHHhhcchHHHHHHHHHh---CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHH---hcccH----HH
Confidence 21 1111 223444444433 2344454444444444443211 111 122333333322 22222 24
Q ss_pred hhhHHHhhccc-cchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 008533 283 CEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (562)
Q Consensus 283 ~~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (562)
+.++..++.++ .....+.+++..++..+ ...+ +
T Consensus 471 lKlIRNiS~h~~~~k~~f~~~i~~L~~~v----~~~~---------------------------------------~--- 504 (708)
T PF05804_consen 471 LKLIRNISQHDGPLKELFVDFIGDLAKIV----SSGD---------------------------------------S--- 504 (708)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHh----hcCC---------------------------------------c---
Confidence 45677777764 22333444444444332 1100 0
Q ss_pred cchhcHhhhHHHHHHHHHhhh-cc----chhh--hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--H
Q 008533 362 VNVWNLRKCSAAALDVLSNVF-GD----EILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--S 432 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~-~~----~~~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~ 432 (562)
.....++++.+++.. ++ .++. .++|++...+..+.+ .......++..+|.++.... ..+.+ .
T Consensus 505 ------ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl~LE~Vi~~gtla~d~~--~A~lL~~s 575 (708)
T PF05804_consen 505 ------EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS-EDDLLLEVVILLGTLASDPE--CAPLLAKS 575 (708)
T ss_pred ------HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHHCCHH--HHHHHHhC
Confidence 012567777777654 22 2332 688899888874421 13566777888888875321 22222 2
Q ss_pred HHHHHHhhhcCC--CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 433 EIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF---EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 433 ~~~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~---~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
.+++.++..|+. .+....-..++++.++..+-.. .+++ .++...++..++|.|+.||..|-.+|.-+.
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456666666653 3455666677888888765221 2222 467888999999999999999999988877
Q ss_pred HHc
Q 008533 508 EEA 510 (562)
Q Consensus 508 ~~~ 510 (562)
+.-
T Consensus 649 e~d 651 (708)
T PF05804_consen 649 EYD 651 (708)
T ss_pred HhC
Confidence 653
No 117
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0032 Score=64.77 Aligned_cols=182 Identities=15% Similarity=0.149 Sum_probs=128.1
Q ss_pred HhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCC--CCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC
Q 008533 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS--GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d 444 (562)
+.-.|...+..++...++.++|.+..+-.+.-+.. + .+.|.+ -+++.++...++-+..|...++...+...+|
T Consensus 784 vyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d---~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvre 858 (982)
T KOG4653|consen 784 VYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTD---YRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVRE 858 (982)
T ss_pred eeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCcc---ceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCC
Confidence 44557888889999888777766655332221111 2 344444 7778888888887888999999999999999
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHccccccccH----H
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAEELAPRL----E 519 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l-~d~~~~vr~~a~~al~~l~~~~~~~~~~~l----~ 519 (562)
++..-|..++-.+|.++....- -..+.+.+++..++... .|.++.||++|+..+..+....+..+.|.+ -
T Consensus 859 pd~~~RaSS~a~lg~Lcq~~a~-----~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~ 933 (982)
T KOG4653|consen 859 PDHEFRASSLANLGQLCQLLAF-----QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLI 933 (982)
T ss_pred chHHHHHhHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 9999999999999999986542 13457777777777655 366799999999999999988887777744 4
Q ss_pred HHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHhhhhhcc
Q 008533 520 IILQHLMMAFGKYQRRNLR-IVYDAIGTLADAVGFELNQV 558 (562)
Q Consensus 520 ~il~~L~~~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~ 558 (562)
+....+.......++...+ .+..|+-.+-.++.+.-+.|
T Consensus 934 Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n~~~~p 973 (982)
T KOG4653|consen 934 DLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALENDDDSP 973 (982)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHhcccCh
Confidence 4444444444444444444 67777777766666544444
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00058 Score=65.64 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=124.2
Q ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCc
Q 008533 393 VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQN 472 (562)
Q Consensus 393 ~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (562)
++.+...+..+..|..|......++.+.....-.-.+.+..++-.+.....|++..+|..|+..|++.+...|..
T Consensus 218 il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k----- 292 (533)
T KOG2032|consen 218 ILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK----- 292 (533)
T ss_pred HHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-----
Confidence 334444433333399999988888877754321123567778888888889999999999999999999987653
Q ss_pred chhhHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 008533 473 GREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (562)
Q Consensus 473 ~~~~~~~il~~l~~~l~d~-~~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (562)
...+...++..++..|-|+ +..|...|..+|..+.+.. ...+.+|+-++--.+-.+..+.+++.+.+++...|.++..
T Consensus 293 v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 293 VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 5778889999999888664 6899999999999999877 6689999999999999988888888777888888888887
Q ss_pred Hhhh
Q 008533 551 VGFE 554 (562)
Q Consensus 551 ~~~~ 554 (562)
.|..
T Consensus 373 ~g~~ 376 (533)
T KOG2032|consen 373 AGGG 376 (533)
T ss_pred cCCC
Confidence 7754
No 119
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.034 Score=53.98 Aligned_cols=266 Identities=15% Similarity=0.139 Sum_probs=152.0
Q ss_pred chHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC-CChhHHHHHhhhHHHhhccccch
Q 008533 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD-TDDDVALEACEFWHSYFEAQLPH 296 (562)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~~~~~ 296 (562)
.+..++..+.+...+++..+|..++.+|+..+...|+....|-+.++..++..+.| .+.+|...++.++..+.+... .
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~-~ 333 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS-N 333 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-h
Confidence 34556667777777888899999999999999999999999999888887776554 457888888888887766421 1
Q ss_pred hhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHH
Q 008533 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (562)
Q Consensus 297 ~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~ 376 (562)
..+.+|+-++.-.+.+. |+ ++ + + ..|.++..+++
T Consensus 334 ~~l~~~~l~ialrlR~l----------~~---------------------------se---~-~-----~~R~aa~~Lfg 367 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTL----------FD---------------------------SE---D-D-----KMRAAAFVLFG 367 (533)
T ss_pred cchhhhchhHHHHHHHH----------HH---------------------------hc---C-h-----hhhhhHHHHHH
Confidence 22333333222221111 11 00 0 1 37889999999
Q ss_pred HHHhhhccchhhhhHHHHHH-------HHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcCCCChh
Q 008533 377 VLSNVFGDEILPTLMPVIQA-------KLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPL 448 (562)
Q Consensus 377 ~l~~~~~~~~~~~l~~~l~~-------~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~d~~~~ 448 (562)
.|+...|+.--..+.+.+.+ .+++++ +.+-.| +. .....+...+ ...+..+++ +.+ |..-.
T Consensus 368 ~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~---p~va~A-Cr---~~~~~c~p~l~rke~~~~~q---~~l-d~~~~ 436 (533)
T KOG2032|consen 368 ALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN---PYVARA-CR---SELRTCYPNLVRKELYHLFQ---ESL-DTDMA 436 (533)
T ss_pred HHHHHcCCCchhhhHHHHHhccccceeeeCCCC---hHHHHH-HH---HHHHhcCchhHHHHHHHHHh---hhh-HHhHH
Confidence 99988876322233333332 233444 544332 22 2222222111 111222222 122 21111
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHH
Q 008533 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLM 526 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~ 526 (562)
|..+ ....++..+.. ++.+.+.-.+......++..-+.||..+..--.++..+..+..-++ ...+...|.
T Consensus 437 -~~q~--Fyn~~c~~L~~-----i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls 508 (533)
T KOG2032|consen 437 -RFQA--FYNQWCIQLNH-----IHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLS 508 (533)
T ss_pred -HHHH--HHHHHHHHHhh-----hCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHH
Confidence 2222 22333333321 2333333344444445566567888888888888888775544444 456667777
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHH
Q 008533 527 MAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 527 ~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
.+..++-.++++.+.+|++.+..
T Consensus 509 ~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 509 TLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHccCCCchhHHHHHHHhhhHhh
Confidence 77777777888888888877653
No 120
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.84 E-value=0.003 Score=57.66 Aligned_cols=185 Identities=16% Similarity=0.103 Sum_probs=120.3
Q ss_pred CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHH-----HHhhhhhCCchHHHHHHHHHHHHHH
Q 008533 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKS-----ELLPCLGAADRHIRSTVGTIVSVVV 121 (562)
Q Consensus 47 ~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~-----~ll~~l~~~~~~vr~~~~~~i~~i~ 121 (562)
++.+..|+.+|.. +.++.++..|...+.+.-.. +..+..|++ .+...+.++++.+|..+..++..++
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~i~e~al~al~n~aaf------~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPFIQEKALIALGNSAAF------PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhc--CCChHHHHHHHHHHHhhccC------hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 3445677788876 78888888888877775321 223333333 4556778899999999999999887
Q ss_pred Hhc-CcCchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHH
Q 008533 122 QLG-GIAGWLELLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRK 198 (562)
Q Consensus 122 ~~~-~~~~w~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~ 198 (562)
... ....-...++.+++.+.+. +...+.+|+.+|..+.-.... ...+...+|.++.++..++..+|.
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----------~~~l~~~i~~ll~LL~~G~~~~k~ 152 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----------HHMLANYIPDLLSLLSSGSEKTKV 152 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch----------hhhHHhhHHHHHHHHHcCChHHHH
Confidence 654 2234456777777766543 557788999999888643221 124566788899999999999999
Q ss_pred HHHHHHHHHHhhchhhHHhchH-HHHHHHhhhccC-CCHHHHHHHHHHHHHHHh
Q 008533 199 LSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSND-PSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~ 250 (562)
.+++++..+... |......+. ..+..+..++.. .+.++...++..+..+.+
T Consensus 153 ~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 153 QVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999998763 221111111 223444444443 245555566666655544
No 121
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0043 Score=63.87 Aligned_cols=223 Identities=17% Similarity=0.154 Sum_probs=146.5
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH
Q 008533 53 LAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL 132 (562)
Q Consensus 53 l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l 132 (562)
+-..+.+..+..+.+|-.|...++..+.+. ..-+-.....+.+..+..+.+.++.|=-.+.+.+..++..++.. +
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----I 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----h
Confidence 444444433667788988888898888865 33333445667778888899999998888888888888875544 4
Q ss_pred HHHHHH-HhccC---ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 133 LQALVT-CLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 133 l~~l~~-~l~~~---~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
+|.+.. ..+.. .++.|...=+++..++...++.+. ++...++..++.+..+++...|..++..++.++
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~--------~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF--------KYKAVLINTFLSGVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence 555554 22222 123333333788888887776543 345678888899999998899999999999998
Q ss_pred hhchhhHHhchHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHhhCccchhh----hHHHHHHHHHhhc-CCCChhHHHHH
Q 008533 209 MLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLEP----HLRNLFEYMLQVN-KDTDDDVALEA 282 (562)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~----~l~~i~~~~~~~~-~~~~~~v~~~a 282 (562)
....-...+.+..++..+.... .++..-+|++|...+..+....+..+-| |+.+....+.... .+.++.++..+
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klha 955 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHA 955 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 8654333445555555555543 3666889999999998888766655444 3334444444433 34445556555
Q ss_pred hhhHHH
Q 008533 283 CEFWHS 288 (562)
Q Consensus 283 ~~~l~~ 288 (562)
..++..
T Consensus 956 ql~lee 961 (982)
T KOG4653|consen 956 QLCLEE 961 (982)
T ss_pred HHHHHH
Confidence 544433
No 122
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.051 Score=60.33 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=89.8
Q ss_pred HhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 008533 367 LRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~ 443 (562)
+|..|...++.+....+. +..+.++......+.+.. ..+|.+++.....+.-..+... ... .+...+.....
T Consensus 275 ~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~---~~vR~~~v~~~~~~l~~~~~~~-~~~-~~~~~l~~~~~ 349 (1266)
T KOG1525|consen 275 VRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDIS---VEVRMECVESIKQCLLNNPSIA-KAS-TILLALRERDL 349 (1266)
T ss_pred HHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCC---hhhhhhHHHHhHHHHhcCchhh-hHH-HHHHHHHhhcC
Confidence 677788888777665443 334566766667777777 8999999887776655432211 111 12222333333
Q ss_pred CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--c-----cccccc
Q 008533 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE--A-----AEELAP 516 (562)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~--~-----~~~~~~ 516 (562)
|.+.++|..++.+.....+. ...+.+.++..+...+.|....||..|...|..+-++ + .....+
T Consensus 350 D~~~rir~~v~i~~~~v~~~---------~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~ 420 (1266)
T KOG1525|consen 350 DEDVRVRTQVVIVACDVMKF---------KLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITP 420 (1266)
T ss_pred ChhhhheeeEEEEEeehhHh---------hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccc
Confidence 44444444333222222222 2445555888888999999999999999999998875 2 223444
Q ss_pred cHHHHHHHHHHHHhhh
Q 008533 517 RLEIILQHLMMAFGKY 532 (562)
Q Consensus 517 ~l~~il~~L~~~l~~~ 532 (562)
-+..|-..|+.++-..
T Consensus 421 ~~swIp~kLL~~~y~~ 436 (1266)
T KOG1525|consen 421 PFSWIPDKLLHLYYEN 436 (1266)
T ss_pred cccccchhHHhhHhhc
Confidence 4444444444444443
No 123
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.77 E-value=0.02 Score=57.71 Aligned_cols=168 Identities=12% Similarity=0.159 Sum_probs=102.2
Q ss_pred CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHH
Q 008533 105 ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR 184 (562)
Q Consensus 105 ~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~ 184 (562)
.+...++.+++.|...++. +++.-.+-+..+..++.+++..+|..|+..|-.+|++-+. .+..+...
T Consensus 34 g~~k~K~Laaq~I~kffk~-FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~------------~v~kvaDv 100 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH-FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE------------HVSKVADV 100 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH------------HHhHHHHH
Confidence 5788999999999999875 3555667789999999999999999999999999987543 46788889
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh-hCccchh--hhHH
Q 008533 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE-VRPSFLE--PHLR 261 (562)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~-~~~~~~~--~~l~ 261 (562)
|.++|+..++.....+=++|.++....|.. .+..++..+... ...++.+|..++..|..-+. ...+.+. .-..
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 999999988888888888888887765522 223333333321 23567899999888865333 3334443 2222
Q ss_pred -HHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 262 -NLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 262 -~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
-++..+...+.|...+--...++++..+
T Consensus 177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~l 205 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEFELFMSLLKSL 205 (556)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhC
Confidence 2334444556654332233344444444
No 124
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.076 Score=55.54 Aligned_cols=136 Identities=17% Similarity=0.133 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCC-hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPD-FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~-~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i 94 (562)
+..++..+.+.|.+ ++|--.-+|..+.+ .|+ .+..+-.+..+..+.++.+|.+|...+... =.++....+
T Consensus 57 f~dViK~~~trd~E-lKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l-------~~~el~~~~ 128 (757)
T COG5096 57 FPDVIKNVATRDVE-LKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLL-------RVKELLGNI 128 (757)
T ss_pred HHHHHHHHHhcCHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhc-------ChHHHHHHH
Confidence 44555555666777 88888888877665 554 333444455544577888887776544322 013444555
Q ss_pred HHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHH--HHHHHHHHhccCChhHHhHHHHHHHHHhhc
Q 008533 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLE--LLQALVTCLDSNDINHMEGAMDALSKICED 161 (562)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 161 (562)
-..+.+++.++++.||+.|+.+++.+.+.+. +..++ +...+..++.+++|.+...|+.+|..+...
T Consensus 129 ~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 129 IDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 6666677778888888888888888887763 33333 455666666778888888888888777665
No 125
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.068 Score=53.82 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG 483 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~ 483 (562)
...+.||+.++-.++.....-- ...-..++..+++.+.|++.+|..++.-+|.++.-.+.+. ...++ ...+..
T Consensus 391 ~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-----kskfl~~ngId~ 465 (678)
T KOG1293|consen 391 HDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-----KSKFLRNNGIDI 465 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-----HHHHHHcCcHHH
Confidence 6788889988887765432100 1222345666777779999999999988888887665431 23333 467888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHcc--ccccccHHHHHHHHHHHHhhhhhhHHHHHH
Q 008533 484 LLKRILDTNKRVQEAACSAFATLEEEAA--EELAPRLEIILQHLMMAFGKYQRRNLRIVY 541 (562)
Q Consensus 484 l~~~l~d~~~~vr~~a~~al~~l~~~~~--~~~~~~l~~il~~L~~~l~~~~~~~~~~~~ 541 (562)
+.+++.+..+.+|..+.++|.++.-.+. ..+.++-.--.+.+..+.++++..+++..+
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 8889999999999999999999988774 345566666666677777777665544433
No 126
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.71 E-value=0.029 Score=53.18 Aligned_cols=193 Identities=20% Similarity=0.157 Sum_probs=122.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHhh--CccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHH
Q 008533 229 LSNDPSAEVRKLVCAAFNLLIEV--RPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (562)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~l~~~--~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l 306 (562)
.+.+.....|..++..+..+... .++++......++..+.+.++....+-+..|+..+.-++-.=.........+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 33455678999999999887654 3566777777888888888776554445566666655543300012233444555
Q ss_pred HHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--
Q 008533 307 VPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-- 384 (562)
Q Consensus 307 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-- 384 (562)
.|.+.+.+.... ..-..|..+..+|..++...+.
T Consensus 131 ~~~L~~~l~d~s--------------------------------------------~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 131 KPVLKRILTDSS--------------------------------------------ASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhCCc--------------------------------------------cchHHHHHHHHHHHHHHHhhcCCh
Confidence 555544433110 0123567777788877765543
Q ss_pred chhhhhHHHHH-----HHHcCCC-------CCCchhHHHHHHHHHHHhhcchh-hhhhhHHHHHHHHhhhcCCCChhHHH
Q 008533 385 EILPTLMPVIQ-----AKLSASG-------DEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLDDKFPLIRS 451 (562)
Q Consensus 385 ~~~~~l~~~l~-----~~l~~~~-------~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~~~~~l~~~l~d~~~~vr~ 451 (562)
.-....++.+. ...+... .++.....+|+.+.+-+...++. .+...+...+|.+...|..++..||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22332223332 2222211 01256888999999988877754 45677788899999999999999999
Q ss_pred HHHHHHHHhHHHHh
Q 008533 452 ISCWTLSRFSKFIV 465 (562)
Q Consensus 452 ~a~~~l~~l~~~~~ 465 (562)
+|-.+|+-+.+...
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887654
No 127
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.044 Score=55.82 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=65.2
Q ss_pred cHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC
Q 008533 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~ 445 (562)
-+|..+.-+|+..|...|.. ..+..+....+++. --+|.+|+.+++-|.-.+.+...|.+..+-..+.+.+.|+
T Consensus 604 HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~---~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 604 HVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPV---DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred hhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChH---HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 47888888898888777753 55566666677776 7899999999999998888877788888777777777775
Q ss_pred C--hhHHHHHHHH
Q 008533 446 F--PLIRSISCWT 456 (562)
Q Consensus 446 ~--~~vr~~a~~~ 456 (562)
| ..++..|+.+
T Consensus 678 hEd~~aK~GAilA 690 (929)
T KOG2062|consen 678 HEDGMAKFGAILA 690 (929)
T ss_pred hhHHHHHHHHHHH
Confidence 5 4566666544
No 128
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.66 E-value=0.0021 Score=54.74 Aligned_cols=139 Identities=23% Similarity=0.257 Sum_probs=109.2
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc-hhhhhhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHHhHHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~-~~~~~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~ 463 (562)
.+..+...+.+.+++++ +..|-+|+..++.+++.+ .+.+..+-...+..++..++. +.+.++..++.+++.+...
T Consensus 22 ~l~~l~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777888888888 999999999999999987 566656667777888888875 4577899999999999987
Q ss_pred Hhhhc--CCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Q 008533 464 IVQDI--GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (562)
Q Consensus 464 ~~~~~--~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l 529 (562)
....- ......+.++.+++.+++.+++ ..+...+..+|..++...+..+.||...+-..+...+
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 65420 1112456688888888887775 5667889999999999999999999998887777654
No 129
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.1 Score=54.13 Aligned_cols=187 Identities=17% Similarity=0.138 Sum_probs=114.9
Q ss_pred HHhhhhhC-CchHHHHHHHHHHHHHHHhcCc---C--chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhccccc
Q 008533 97 ELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI---A--GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSD 169 (562)
Q Consensus 97 ~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~---~--~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~ 169 (562)
.|++.|+. .++...-.+..-+..+...... . ....++|.|+++++.+ +++....|+.+|.++|+.++.....-
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 45555653 3666555444444444443221 2 3467899999999986 68888999999999999998754311
Q ss_pred CCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 170 VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
+-...+|.|+.-|.. +-.+|.+++++++..+....|..+.+. .. +-.++..+.--....++.++.+-...
T Consensus 251 -------V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A-G~-l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 251 -------VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA-GA-LSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred -------ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc-cc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113367777665554 456899999999998887766443321 01 11111111101134556666666677
Q ss_pred HhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 249 IEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 249 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
+...+..-..++-+.+|++...++..+......+.-++..+++.
T Consensus 322 Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 322 CKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 66543322255667788888887777777766666666666654
No 130
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.17 Score=56.43 Aligned_cols=332 Identities=13% Similarity=0.064 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHHhhh---hhCC-ch-HHHH-----HHHHHHHHHHHhc--CcC
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSM--SPSNQQYIKSELLPC---LGAA-DR-HIRS-----TVGTIVSVVVQLG--GIA 127 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l--~~~~~~~i~~~ll~~---l~~~-~~-~vr~-----~~~~~i~~i~~~~--~~~ 127 (562)
.++.++|.+-+..+-..+.-.=+.. +......|-..++.. |.+. ++ ..|+ .++.+...+...+ ..+
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 7888999999998888776543332 223344444444443 3442 33 3332 2222221111111 124
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
..++++..+...++.+-+.....-+.++..+...... .-..++..++.-+-.+..+....|.+.-..+
T Consensus 141 ~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~------------v~~e~L~~ll~~lv~~~~~~~~~a~~la~~l 208 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDT------------VQSELLDVLLENLVKPGRDTIKEADKLASDL 208 (1266)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHhccCCCCccHHHHHHHHHH
Confidence 4566666666666665544444433444444333221 2355666666666555566666666666666
Q ss_pred HhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHH
Q 008533 208 IMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~ 287 (562)
+..+++.+.+.+..++...+......-..++....+.+..+....+..+ -.++|.+..-+....+++|..|...++
T Consensus 209 i~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll----~~vip~l~~eL~se~~~~Rl~a~~lvg 284 (1266)
T KOG1525|consen 209 IERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLL----LAVIPQLEFELLSEQEEVRLKAVKLVG 284 (1266)
T ss_pred HHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666655555555555555443332234455666667766666655543 456666666677778889999999998
Q ss_pred HhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcH
Q 008533 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (562)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (562)
.+...+..+ +....+.+....+..+.. . ...+
T Consensus 285 ~~~~~~~~~--l~~~~~~~~~~fl~r~~D------------------------------------~----------~~~v 316 (1266)
T KOG1525|consen 285 RMFSDKDSQ--LSETYDDLWSAFLGRFND------------------------------------I----------SVEV 316 (1266)
T ss_pred HHHhcchhh--hcccchHHHHHHHHHhcc------------------------------------C----------Chhh
Confidence 887653221 112233333333322210 0 0136
Q ss_pred hhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh
Q 008533 368 RKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP 447 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~ 447 (562)
|..+.+........-+. ........+.-...+.| ..+|......+..+. ..+....+.+.++..+...+.|+.+
T Consensus 317 R~~~v~~~~~~l~~~~~-~~~~~~~~~~l~~~~~D---~~~rir~~v~i~~~~--v~~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 317 RMECVESIKQCLLNNPS-IAKASTILLALRERDLD---EDVRVRTQVVIVACD--VMKFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred hhhHHHHhHHHHhcCch-hhhHHHHHHHHHhhcCC---hhhhheeeEEEEEee--hhHhhhhhhHHHHHHHHHHHhhhhH
Confidence 77666555544433222 11122222222223344 555555433222111 1122234555588899999999999
Q ss_pred hHHHHHHHHHHHhHHH
Q 008533 448 LIRSISCWTLSRFSKF 463 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~ 463 (562)
.||..|+..+.++-+.
T Consensus 391 ~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998884
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.65 E-value=6.1e-05 Score=43.64 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHH
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
++|.+++.++|+++.||.+|++++|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999874
No 132
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.022 Score=59.77 Aligned_cols=99 Identities=20% Similarity=0.074 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc---hhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC---IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~---~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (562)
++..++......+++.+ -+.|..++.++......+ .+.+.|.+.+.+|.++..+.+++|.+...|+.++-++++
T Consensus 800 iv~kIl~r~~~~LS~e~---l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHES---LRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHhcchh---HHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34456666677888888 899999998887654433 456678899999999999999999999999999999999
Q ss_pred HHhhhcCCCcchhhHHHHHHHHHHHhccC
Q 008533 463 FIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (562)
Q Consensus 463 ~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (562)
..+.|+ ...+++.++|.+-..+++.
T Consensus 877 ~sgDFv----~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 877 YSGDFV----ASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred HhhhHH----HHHHHHHHHHHHHHHHHHH
Confidence 998874 6777888888887666653
No 133
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.028 Score=54.68 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=144.1
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 008533 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (562)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 259 (562)
...+.+.+.+.+.+..+|..|...++.+-. ...++.+...+.+.++.+|..+..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 457778889999999999999888554432 2346666677788888999998886655321
Q ss_pred HHHHHHHHHhhcC-CCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCC
Q 008533 260 LRNLFEYMLQVNK-DTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (562)
Q Consensus 260 l~~i~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (562)
+..++.++.... +.+..+|..+...++.+... ..+ ..++..+ ....... -+
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----~a~----~~l~~~l----~~~~~~~-a~-------------- 155 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLGDE----RAL----DPLLEAL----QDEDSGS-AA-------------- 155 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----hhh----HHHHHHh----ccchhhh-hh--------------
Confidence 122333333333 67888999999888887654 111 2222221 1100000 00
Q ss_pred CCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 008533 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (562)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (562)
... ....|.+|..+...+..+.. +...+.+...+.+.+ ..+|.++..+++.
T Consensus 156 -------------~~~------~~~~~~~r~~a~~~l~~~~~-------~~~~~~l~~~l~~~~---~~vr~~Aa~aL~~ 206 (335)
T COG1413 156 -------------AAL------DAALLDVRAAAAEALGELGD-------PEAIPLLIELLEDED---ADVRRAAASALGQ 206 (335)
T ss_pred -------------hhc------cchHHHHHHHHHHHHHHcCC-------hhhhHHHHHHHhCch---HHHHHHHHHHHHH
Confidence 000 01123567776666655433 355677788888888 8999999999999
Q ss_pred HhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHH
Q 008533 419 IAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (562)
Q Consensus 419 i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~ 498 (562)
+.... ..+.+.+...+.|.+..||..++..+|.+... .....+...+.+.+..++..
T Consensus 207 ~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~---------------~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 207 LGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGDE---------------EAVDALAKALEDEDVILALL 263 (335)
T ss_pred hhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc---------------hhHHHHHHHHhccchHHHHH
Confidence 88764 44567788889999999999999888876542 23344555555666666665
Q ss_pred HHHHHH
Q 008533 499 ACSAFA 504 (562)
Q Consensus 499 a~~al~ 504 (562)
+..+++
T Consensus 264 ~~~~~~ 269 (335)
T COG1413 264 AAAALG 269 (335)
T ss_pred HHHHhc
Confidence 555554
No 134
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.63 E-value=0.062 Score=52.25 Aligned_cols=187 Identities=18% Similarity=0.168 Sum_probs=124.7
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA 127 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~ 127 (562)
.....+...+.+ .+..+|..|+..+... .-....+.+...+.+.++.+|..++.+++.+..
T Consensus 43 ~~~~~~~~~l~~---~~~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----- 103 (335)
T COG1413 43 EAADELLKLLED---EDLLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----- 103 (335)
T ss_pred hhHHHHHHHHcC---CCHHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-----
Confidence 355666666663 4899999888764332 112334567778889999999999997665542
Q ss_pred chHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCC------------H
Q 008533 128 GWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH------------T 194 (562)
Q Consensus 128 ~w~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~------------~ 194 (562)
+.-++.++..+. +.+..+|..+..+|+.+-.. ..+..++..+++.. .
T Consensus 104 --~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~------------------~a~~~l~~~l~~~~~~~a~~~~~~~~~ 163 (335)
T COG1413 104 --PEAVPPLVELLENDENEGVRAAAARALGKLGDE------------------RALDPLLEALQDEDSGSAAAALDAALL 163 (335)
T ss_pred --hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch------------------hhhHHHHHHhccchhhhhhhhccchHH
Confidence 556677777777 68899999999999876432 22445566666644 2
Q ss_pred HHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCC
Q 008533 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~ 274 (562)
.+|..+...+..+.. +.....+...+.+.+..+|..+...|+.+.... ..+.+.+.....+.
T Consensus 164 ~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~ 225 (335)
T COG1413 164 DVRAAAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE 225 (335)
T ss_pred HHHHHHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC
Confidence 456666666655432 112334444556666789999999988876554 34555566677888
Q ss_pred ChhHHHHHhhhHHHhhc
Q 008533 275 DDDVALEACEFWHSYFE 291 (562)
Q Consensus 275 ~~~v~~~a~~~l~~~~~ 291 (562)
+..+|..++..++....
T Consensus 226 ~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 226 SLEVRKAALLALGEIGD 242 (335)
T ss_pred CHHHHHHHHHHhcccCc
Confidence 88899988876666543
No 135
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0008 Score=60.89 Aligned_cols=131 Identities=18% Similarity=0.310 Sum_probs=101.7
Q ss_pred HHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCC
Q 008533 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH 470 (562)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 470 (562)
+......+.+.+ |....-++..+..++....+.+.+.+..++..+.+.+++....|-.+||.+++.+...+...
T Consensus 90 l~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDD---WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--- 163 (334)
T ss_pred HHHHHHHhchHH---HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---
Confidence 333445566777 99999999999999998888889999999999999999999999999999999999988653
Q ss_pred CcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhh
Q 008533 471 QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRR 535 (562)
Q Consensus 471 ~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~ 535 (562)
....++.++..|+..-..++.-||..|-.+|..++.+..+ ..+++.|...+.+....
T Consensus 164 --i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r 220 (334)
T KOG2933|consen 164 --IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPR 220 (334)
T ss_pred --HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchh
Confidence 3446677777776655556788999999999999987632 23444444444444333
No 136
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.61 E-value=0.0011 Score=68.60 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
.+++|.+.+.+.......+...+.+|.-+....|.... .+.++.++|.+++++.-++..+|..++.++..+..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vl-------lp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVL-------LPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhh-------ccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 46778888888855557788889999888888776432 24678899999999999999999999999999887
Q ss_pred hchhhHHhchHHHHHHHhhhccCCC---HHHHHHHHHHHHHHHhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhh
Q 008533 210 LMPSALFVSMDQYLQGLFLLSNDPS---AEVRKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (562)
Q Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~L~~l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~ 285 (562)
..++-...++.++++.++.+..+.+ -.+|..+++||..+.+.. ...+-+|-++++..+...+.|+..-+|..|.++
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 7776667788889999988877655 468999999999999944 466778888999998889999888899988764
No 137
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.60 E-value=0.00096 Score=68.90 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=120.6
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
++..+.|.+.+.+...+ -..|.--+.+|+.+....+ ..+.|.++.++|.+++.|.=+++.||-.+..++..+..-.
T Consensus 864 fF~~ivP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHhhHHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 34567777777776444 4566666777777776654 5567999999999999999999999999999988887764
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHhhhhhhHHHHH
Q 008533 465 VQDIGHQNGREQFEKVLMGLLKRILDTN---KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFGKYQRRNLRIV 540 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~il~~l~~~l~d~~---~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~~~~~~~~~~~ 540 (562)
+ .-...++..+++.++..=.|++ ..||..|..+|..+.+.. ...+.||-+.++++|.+.+.+++..+++.+
T Consensus 941 ~-----tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 941 E-----TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred c-----ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 4 3468899999999987666554 689999999999999977 457899999999999999999887777766
Q ss_pred HHHH
Q 008533 541 YDAI 544 (562)
Q Consensus 541 ~~~l 544 (562)
.++=
T Consensus 1016 v~tR 1019 (1030)
T KOG1967|consen 1016 VDTR 1019 (1030)
T ss_pred HHHh
Confidence 6653
No 138
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.11 Score=53.11 Aligned_cols=405 Identities=16% Similarity=0.147 Sum_probs=222.9
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hhcCCChHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCh--
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQ-YSQFPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSP-- 88 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~-~~~~~~~~~~l~~il~~~-~~~~~~~R~~a~~~lk~~i~~~w~~l~~-- 88 (562)
.-.++.+.|+ +.|.+ .+-.|-+.+-. +.+-..+.+.+.+|+.-- +..+- .+|+.+-..|.-++.
T Consensus 21 ~~~~ik~~Le---k~~~~-~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~--------elKKLly~ywE~vPKt~ 88 (948)
T KOG1058|consen 21 SEDEIKEKLE---KGDDE-VKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNH--------ELKKLLYYYWELVPKTD 88 (948)
T ss_pred chHHHHHHHh---cCChH-HHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCch--------HHHHHHHHHHHHccccC
Confidence 4467777777 56666 66666666554 333333444444444310 12222 356666667765432
Q ss_pred ------hhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcc
Q 008533 89 ------SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (562)
Q Consensus 89 ------~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 162 (562)
.+.-.+.+.+-+-|++|++.||-...+.+..+ ..++-...++|.+.+++....+-+|..|+.++..|.+.+
T Consensus 89 ~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckL---kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~ 165 (948)
T KOG1058|consen 89 SDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL---KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF 165 (948)
T ss_pred CCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhc---CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh
Confidence 11123334444556779999997665555443 334567788999999999999999999999999998874
Q ss_pred hhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHH
Q 008533 163 PQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVC 242 (562)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 242 (562)
...+ + ...+++..++. .+.++..+..|+-.+.. ..|+.-.++ +...+....+-++.....++
T Consensus 166 ~~L~-p--------DapeLi~~fL~--~e~DpsCkRNAFi~L~~---~D~ErAl~Y----l~~~idqi~~~~~~LqlViV 227 (948)
T KOG1058|consen 166 EHLI-P--------DAPELIESFLL--TEQDPSCKRNAFLMLFT---TDPERALNY----LLSNIDQIPSFNDSLQLVIV 227 (948)
T ss_pred hhhc-C--------ChHHHHHHHHH--hccCchhHHHHHHHHHh---cCHHHHHHH----HHhhHhhccCccHHHHHHHH
Confidence 4432 1 23444444432 34566677766554433 222211111 11111222233455666667
Q ss_pred HHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 243 AAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 243 ~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
+.+.+.+...|..-..|+.-++. .+...+..++-.|.-.+.++.. .+..++...+.++..++..-
T Consensus 228 E~Irkv~~~~p~~~~~~i~~i~~----lL~stssaV~fEaa~tlv~lS~---~p~alk~Aa~~~i~l~~kes-------- 292 (948)
T KOG1058|consen 228 ELIRKVCLANPAEKARYIRCIYN----LLSSTSSAVIFEAAGTLVTLSN---DPTALKAAASTYIDLLVKES-------- 292 (948)
T ss_pred HHHHHHHhcCHHHhhHHHHHHHH----HHhcCCchhhhhhcceEEEccC---CHHHHHHHHHHHHHHHHhcc--------
Confidence 77777776655554455544444 4444466676666554444443 34556655555555542100
Q ss_pred hhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh--ccchhhhhHHHHHHHHcC
Q 008533 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--GDEILPTLMPVIQAKLSA 400 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~l~~~l~~~l~~ 400 (562)
|+ ++.-. .+++|...- ...++..+.--+...+++
T Consensus 293 -----------------------------dn------------nvklI---vldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 293 -----------------------------DN------------NVKLI---VLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred -----------------------------Cc------------chhhh---hHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 00 11111 233333322 224555555555667788
Q ss_pred CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc-------CCCChhHHHHHHHHHHHhHHHHhhhcCCCcc
Q 008533 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-------DDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (562)
Q Consensus 401 ~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (562)
++ -.+|.-++...-.++..- .+.+++..+.+.+ .|++..-|..-..++...+..+
T Consensus 329 ~d---ldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~F--------- 390 (948)
T KOG1058|consen 329 PD---LDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF--------- 390 (948)
T ss_pred cc---ccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcC---------
Confidence 88 888888775554444322 2333444444433 2345667887777777777654
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhh
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGK 531 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~ 531 (562)
.++-..+++.++..+.|.|+........ |++.+-+.+...=..+++.++..+..
T Consensus 391 p~~aatvV~~ll~fisD~N~~aas~vl~----FvrE~iek~p~Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 391 PEVAATVVSLLLDFISDSNEAAASDVLM----FVREAIEKFPNLRASIIEKLLETFPQ 444 (948)
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHH----HHHHHHHhCchHHHHHHHHHHHhhhh
Confidence 4567789999999999987754333333 44443333333334556666665554
No 139
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.57 E-value=0.041 Score=54.24 Aligned_cols=153 Identities=18% Similarity=0.066 Sum_probs=85.5
Q ss_pred CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc
Q 008533 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI 126 (562)
Q Consensus 47 ~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~ 126 (562)
|..+..|+..+.. ..+..++..++..+. .|.. + ...+.++..|.+.++.||..++..++.+
T Consensus 53 ~~a~~~L~~aL~~--d~~~ev~~~aa~al~-----~~~~--~----~~~~~L~~~L~d~~~~vr~aaa~ALg~i------ 113 (410)
T TIGR02270 53 KAATELLVSALAE--ADEPGRVACAALALL-----AQED--A----LDLRSVLAVLQAGPEGLCAGIQAALGWL------ 113 (410)
T ss_pred HhHHHHHHHHHhh--CCChhHHHHHHHHHh-----ccCC--h----HHHHHHHHHhcCCCHHHHHHHHHHHhcC------
Confidence 4455666666643 445555554444332 1111 1 1134566667777777777777776633
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008533 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (562)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (562)
..+...+.|...++++++.+|.+++.+++... ..-.+.+...+++.++.||..|+.+++.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------------------~~~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------------------HDPGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------------------cChHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 34556666777777777777776665555411 1123455666667777777777777766
Q ss_pred HHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
+-... .++.+...+.+.++.+|..+...+..+
T Consensus 174 l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 174 LPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 54311 122233335666777777776666443
No 140
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.57 E-value=0.11 Score=52.27 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=94.8
Q ss_pred HhhhHHHHHHHHHhhhc----cchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhh
Q 008533 367 LRKCSAAALDVLSNVFG----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPL 441 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~ 441 (562)
++.+|..++..++..+. +---..++.-+.+.+.+++ -.+..+++.++..++-..++.-..++. ..+..+...
T Consensus 393 ~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~---~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 393 FVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPE---IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcc---hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 56777777766665441 1111245555666667787 888999998888888776654445554 367888889
Q ss_pred cCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL-LKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l-~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+.++++.+|..+.|++-.+.=...+. .....+..+-..+ ....+|+++.|++.+...+.++...+
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~----~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEE----EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHH----HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999887443321 1233344444444 34457899999999999999998665
No 141
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.56 E-value=0.013 Score=53.51 Aligned_cols=211 Identities=17% Similarity=0.152 Sum_probs=135.1
Q ss_pred HhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC---------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 008533 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT 81 (562)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~---------~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~ 81 (562)
++.++.|..+|.. +.|.. ++.+|...+......| +.+..+..++. +.++.+|..|...+.|.-
T Consensus 11 ~~~l~~Ll~lL~~--t~dp~-i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~---~p~~~vr~~AL~aL~Nls-- 82 (254)
T PF04826_consen 11 AQELQKLLCLLES--TEDPF-IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN---DPNPSVREKALNALNNLS-- 82 (254)
T ss_pred HHHHHHHHHHHhc--CCChH-HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC---CCChHHHHHHHHHHHhcC--
Confidence 3777788888875 44556 8899999998865433 23333333343 678999988888777652
Q ss_pred hhccCChhhHHHHHHHHhhhh----hC-CchHHHHHHHHHHHHHHHhc-CcCchHHHHHHHHHHhccCChhHHhHHHHHH
Q 008533 82 AYKSMSPSNQQYIKSELLPCL----GA-ADRHIRSTVGTIVSVVVQLG-GIAGWLELLQALVTCLDSNDINHMEGAMDAL 155 (562)
Q Consensus 82 ~w~~l~~~~~~~i~~~ll~~l----~~-~~~~vr~~~~~~i~~i~~~~-~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l 155 (562)
.+.+.+..|+..+-+.+ .. -+..++..+..++..+...+ ........++.+..++.+++...+.-++.+|
T Consensus 83 ----~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 83 ----VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred ----CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 23344445554433333 22 36778878888888886543 3344566788889999999999999999999
Q ss_pred HHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhchh-------------hHH---hc
Q 008533 156 SKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS-------------ALF---VS 218 (562)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~-------------~~~---~~ 218 (562)
..+.+...-.- . -...+.++.|+.+++.. +.++...++..+..+...... .+. ..
T Consensus 159 ~nLS~np~~~~-----~---Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e 230 (254)
T PF04826_consen 159 VNLSENPDMTR-----E---LLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGE 230 (254)
T ss_pred HHhccCHHHHH-----H---HHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHcc
Confidence 98887643210 0 12245677788888875 567888888888877553221 011 11
Q ss_pred hHHHHHHHhhhccCCCHHHHHHH
Q 008533 219 MDQYLQGLFLLSNDPSAEVRKLV 241 (562)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~ 241 (562)
...+-+.+..+..++|+++|.++
T Consensus 231 ~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 231 SSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHHHHHcCCCHHHhhhc
Confidence 12234555556667778877654
No 142
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=97.54 E-value=0.14 Score=52.49 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc----CCCh---HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ----FPDF---NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----~~~~---~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~ 89 (562)
|..+|..+.||+.. +|++..+.|+++.+ .|.. +..|+....+. +...-+|.++.++++. ..++++.+
T Consensus 25 L~plLlkl~S~~~~-VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~-~~s~~vrnfsliyi~~----g~~Rl~~~ 98 (501)
T PF13001_consen 25 LPPLLLKLASPHAS-VRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEP-SDSSFVRNFSLIYIEM----GFDRLDDE 98 (501)
T ss_pred HHHHHHHhcCCcHH-HHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCC-CCchHHHHHHHHHHHH----hhhcCCHH
Confidence 55666777889888 99999999998653 4553 55677777652 4478999999986654 45669999
Q ss_pred hHHHHHHHHhhhhhC
Q 008533 90 NQQYIKSELLPCLGA 104 (562)
Q Consensus 90 ~~~~i~~~ll~~l~~ 104 (562)
++..+.+.+++.+..
T Consensus 99 e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 99 ERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999999874
No 143
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.003 Score=57.32 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=101.9
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHH---HHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPV---IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~---l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~ 440 (562)
.|...-.+...+..|+..=++...+.+... +.+-+++.. ..+-.+|+.+++.+.....+.+...++.++..++.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlR---S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ 177 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLR---SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLH 177 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777788888888776555444444444 444455554 77888999999999998887777777778887777
Q ss_pred hcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
.-.+++.+||..|-.+|..+.....+ ..+++.|+.++++.++++|..++.++.+.....+
T Consensus 178 ka~~dnrFvreda~kAL~aMV~~vtp-----------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 178 KASQDNRFVREDAEKALVAMVNHVTP-----------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred hhcccchHHHHHHHHHHHHHHhccCh-----------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 77788999999999999998886531 4567777777888899999999998887776653
No 144
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.21 Score=53.99 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=86.3
Q ss_pred HHHHHHHHhh---hc-cchhhhhHHHHHHHHcCCCC-CCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CC
Q 008533 372 AAALDVLSNV---FG-DEILPTLMPVIQAKLSASGD-EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DK 445 (562)
Q Consensus 372 ~~~l~~l~~~---~~-~~~~~~l~~~l~~~l~~~~~-~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~ 445 (562)
.+++..+++. +| +.++..+.|++....+.+.. ..+..+.||..+|+.+..-..+ |-..-+|.++..+. .+
T Consensus 898 ~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces~l~llftimeksp 973 (1251)
T KOG0414|consen 898 ADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCESHLPLLFTIMEKSP 973 (1251)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhcCC
Confidence 3455555543 36 57888999999888864310 1288999999999988754332 33444566666665 78
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+|.||.+++-++|-++-.++. .+++.-+.+...|+|.++.||..|.-.|.+++-
T Consensus 974 ~p~IRsN~VvalgDlav~fpn---------lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL 1027 (1251)
T KOG0414|consen 974 SPRIRSNLVVALGDLAVRFPN---------LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL 1027 (1251)
T ss_pred Cceeeecchheccchhhhccc---------ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 888888888888888877643 344555666777788888888888888887764
No 145
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.50 E-value=0.0031 Score=53.69 Aligned_cols=126 Identities=19% Similarity=0.086 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-CHHHHHHHHHHHHHH
Q 008533 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATL 506 (562)
Q Consensus 428 ~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~vr~~a~~al~~l 506 (562)
...++.++..+...++++++.-|..++..++..+...+.. ....+...-+..+++.|+.+ .+.++..++.++..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4457778888999999999999999999999999886322 34566778888888888765 467899999999999
Q ss_pred HHHc-------cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 507 EEEA-------AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 507 ~~~~-------~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+... ++...|.++.+++.++.++++ ......+++++..+....+. .|+||+
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt-t~rp~~ 153 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT-TFRPFA 153 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc-cccchH
Confidence 9764 466789999999999999886 34566889999999988775 447774
No 146
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.49 E-value=0.096 Score=60.72 Aligned_cols=344 Identities=13% Similarity=0.105 Sum_probs=179.6
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 008533 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQ 206 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~ 206 (562)
.|.-+-+++.+...+.+..++..|+..|.+++-.+-..-+ ..+ -..-+.++.+|...+.+ .+.++|...++|+..
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eE--L~~--f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREE--LAN--YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhh--hhc--hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3433455555544455667777888888887765543211 000 02345677777776664 567999999999999
Q ss_pred HHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh----hhHHHHHHHHHhhcC-CCChhHHHH
Q 008533 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE----PHLRNLFEYMLQVNK-DTDDDVALE 281 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~----~~l~~i~~~~~~~~~-~~~~~v~~~ 281 (562)
++....+.+..-=..++..+-....+.++.+...+++.+..++..+-..+. ..+..++..+.+... ..+.++...
T Consensus 1210 mI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~ 1289 (1780)
T PLN03076 1210 MVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLN 1289 (1780)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHH
Confidence 988655444433234455554445667788888899998887765332221 233444444433322 223456666
Q ss_pred HhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 008533 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (562)
Q Consensus 282 a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (562)
|++++..++.. . ....+ ...... ++.+.....+ . . ..+..+ ++ .
T Consensus 1290 AI~lL~~~~~~--L---a~~~~--------~~~~~~-~~~~~~~~~s-------------~---~---~~~~~~-~~-~- 1333 (1780)
T PLN03076 1290 AIAFLRFCATK--L---AEGDL--------GSSSRN-KDKEAPPSSP-------------Q---S---GKDGKQ-ES-G- 1333 (1780)
T ss_pred HHHHHHHHHHH--H---Hhccc--------cccccc-cccccccccc-------------c---c---cccccc-cc-c-
Confidence 66665544332 0 00000 000000 0000000000 0 0 000000 00 0
Q ss_pred cchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhh-----hHHHHHH
Q 008533 362 VNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP-----HLSEIVA 436 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~-----~l~~~~~ 436 (562)
.+... +.. ....-.++.-+.....++. ..+|..|+..|-.+....+..+.+ .+..++-
T Consensus 1334 ----~~~~~--~~~--------~~lW~pLL~~Ls~l~~D~R---lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLF 1396 (1780)
T PLN03076 1334 ----EFTDK--DDH--------LYFWFPLLAGLSELSFDPR---PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLF 1396 (1780)
T ss_pred ----ccccc--hhH--------HHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 00000 000 0011122233333445666 889999999888877655544432 2333333
Q ss_pred HHhhhcCC-----------------------CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCH
Q 008533 437 FLIPLLDD-----------------------KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK 493 (562)
Q Consensus 437 ~l~~~l~d-----------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~ 493 (562)
.++..++. ....+..+...++..++..+..+. ......++.++..+..++..++.
T Consensus 1397 PIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF--d~L~~~L~~~l~ll~~ci~q~n~ 1474 (1780)
T PLN03076 1397 PIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFY--PTVNPLLKKVLMLLVSFIKRPHQ 1474 (1780)
T ss_pred HHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCchH
Confidence 33333321 011245566666666666555432 12455788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHh
Q 008533 494 RVQEAACSAFATLEEEAAEELAP-RLEIILQHLMMAFG 530 (562)
Q Consensus 494 ~vr~~a~~al~~l~~~~~~~~~~-~l~~il~~L~~~l~ 530 (562)
.+....+.||.+++...+..|.+ .-..++..+.+++.
T Consensus 1475 ~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1475 SLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 88889999999999887666654 33444444444443
No 147
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.46 E-value=0.0012 Score=56.44 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHhhc-chhhhhhhHHHHHHHH------------hhhcCCCChhHHHHHHHHHHHhHHHHhhhc-----
Q 008533 407 KDREAAVLALGAIAEG-CIKGLYPHLSEIVAFL------------IPLLDDKFPLIRSISCWTLSRFSKFIVQDI----- 468 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~-~~~~~~~~l~~~~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----- 468 (562)
++|.+|+.+|..++.. .++.+..|-..++|.- .-.+.|++++||.+|+.++..+.+....++
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 4555566666665532 234579999999999999999987654432
Q ss_pred -C-CC-c-------chhhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHccc-ccc-ccHHHHHHHHHHHHhhhhhh
Q 008533 469 -G-HQ-N-------GREQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAE-ELA-PRLEIILQHLMMAFGKYQRR 535 (562)
Q Consensus 469 -~-~~-~-------~~~~~~~il~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~-~~~-~~l~~il~~L~~~l~~~~~~ 535 (562)
. +. . ....+.++-..++..|+. .+..+....++++..++.+.+. .+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 10 1 122244444455555554 3677788899999999988753 333 57888999988888887777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008533 536 NLRIVYDAIGTLADAVG 552 (562)
Q Consensus 536 ~~~~~~~~l~~l~~~~~ 552 (562)
++-.++.+++.+....+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 77788888888876543
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.46 E-value=0.0022 Score=54.32 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=95.3
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---
Q 008533 431 LSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE--- 507 (562)
Q Consensus 431 l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~--- 507 (562)
.+..+|.++..+......-|.-|...+..+...- ++...-+.+++++..+-.+|+..++.|..++..+|..++
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~----~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG----GGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3457888899998876666777777777777761 123467889999999999999999999999999999995
Q ss_pred HHccccccccHHHHHHHHHHHHhhh----------hhhHH-HHHHHHHHHHHHHHhhhhhc
Q 008533 508 EEAAEELAPRLEIILQHLMMAFGKY----------QRRNL-RIVYDAIGTLADAVGFELNQ 557 (562)
Q Consensus 508 ~~~~~~~~~~l~~il~~L~~~l~~~----------~~~~~-~~~~~~l~~l~~~~~~~~~~ 557 (562)
+..++.+.||+.++++.+--..+.. ..+.+ ..+.+++..+-..-|++++.
T Consensus 112 ~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~ 172 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI 172 (183)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence 4458999999999998877555544 12333 47889999999998988653
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.014 Score=61.53 Aligned_cols=101 Identities=21% Similarity=0.232 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~ 483 (562)
.+.|.-|.+.|+.++.+..-.-...+ ..++...+..++| ++|..|.-.|-+||++=+.+... -..-.-...-+.
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~A----rw~G~r~~Ahek 646 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEA----RWSGRRDNAHEK 646 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchh----hhccccccHHHH
Confidence 57788888899999988754333333 3467788888888 48999999999999998766542 011112344556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 484 LLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 484 l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+...|.|+.+.||.+|..||++|+...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 677788999999999999999999863
No 150
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.43 E-value=0.17 Score=58.89 Aligned_cols=193 Identities=14% Similarity=0.101 Sum_probs=119.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcc--CC-hhhHHHHHHHHhhhhh-CCchHHHHHHHHHHHHHHHhc---CcCchHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKS--MS-PSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLG---GIAGWLELLQ 134 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~--l~-~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~ 134 (562)
..+..++.+|.-.||..-.+.... +. -..++.+.+.+...+. +.+..||..+.+++..|.... ....|..++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 346778888988888766554321 11 1223333344444454 467899999999999998764 3479999999
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhchh
Q 008533 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS 213 (562)
Q Consensus 135 ~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~ 213 (562)
.+.....+..+.....|..++..|+.++-..+.... ......++.-+..+.+.. +.++-..|+..|..+...+.+
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~----~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~ 1303 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETE----TTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAE 1303 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccc----hhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHh
Confidence 999888888888999999999988876544221100 012344444444444332 344555555555544222100
Q ss_pred ---------------------------h---H---HhchHHHHHHHh---hhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 214 ---------------------------A---L---FVSMDQYLQGLF---LLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 214 ---------------------------~---~---~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
. + ......|++.+. ....+..++||..+++.|-.+...++..|.
T Consensus 1304 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1304 GDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 0 011123444433 345678899999999999998888887776
Q ss_pred h
Q 008533 258 P 258 (562)
Q Consensus 258 ~ 258 (562)
+
T Consensus 1384 ~ 1384 (1780)
T PLN03076 1384 L 1384 (1780)
T ss_pred H
Confidence 5
No 151
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.41 E-value=0.00038 Score=40.27 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 480 il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+++.+++.++|+++.||.+|+.+|+.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5788999999999999999999999998753
No 152
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.38 E-value=0.019 Score=57.00 Aligned_cols=219 Identities=15% Similarity=0.185 Sum_probs=128.6
Q ss_pred HHHHHHHHhhhhhC----CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHh----ccC-ChhHHhHHHHHHHHHhhc
Q 008533 91 QQYIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL----DSN-DINHMEGAMDALSKICED 161 (562)
Q Consensus 91 ~~~i~~~ll~~l~~----~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l----~~~-~~~~~~~al~~l~~i~~~ 161 (562)
...+...|+..+.. +++.+-+..-+++..+-... ...-..+++.|...+ +++ +|..-+...++++.+.+.
T Consensus 24 ~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~-~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDI-LPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTT-GGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 35566677776642 46777766666655433221 223455555555444 343 677777888888888776
Q ss_pred chhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch-hhHHhchHHHHHHHhhhccCCCHHHHHH
Q 008533 162 IPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-SALFVSMDQYLQGLFLLSNDPSAEVRKL 240 (562)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 240 (562)
....-. +.....-+.++|.+...|+..-.+.---+++.++.+++..+ +.+.+....+++.++.-.--....---+
T Consensus 103 ~~~~~~----~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPa 178 (435)
T PF03378_consen 103 VCEADP----EAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPA 178 (435)
T ss_dssp S-GGGH----H---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHH
T ss_pred ccCCCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCc
Confidence 543211 01112457789999999998777888888999999988765 3333333334444433211011112245
Q ss_pred HHHHHHHHHhhCccchh--hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccC
Q 008533 241 VCAAFNLLIEVRPSFLE--PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA 317 (562)
Q Consensus 241 ~~~~L~~l~~~~~~~~~--~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~ 317 (562)
..+.|..++...+..+. +++..++..+-+++.++..+ ..+++++.++.+. -..+.+.+|+..++..++..++.+
T Consensus 179 lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~-~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 179 LVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVEN-LPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHH-S-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHhhC
Confidence 66777778877777664 56777777766666554332 4688888888776 123568899999999998887643
No 153
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.32 E-value=0.0056 Score=51.70 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=96.0
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHh
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRF 460 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-----d~~~~vr~~a~~~l~~l 460 (562)
..|.+++.+.+.++.+.+ |..|.+++.++|.+..-- ||.-+.+ ..... +.+.........
T Consensus 7 ~yP~LL~~L~~iLk~e~s--~~iR~E~lr~lGilGALD-----P~~~k~~---~~~~~~~~~~~~~~~~~~~~l~----- 71 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQS--QSIRREALRVLGILGALD-----PYKHKSI---QKSLDSKSSENSNDESTDISLP----- 71 (160)
T ss_pred HhHHHHHHHHHHHHhCCC--HHHHHHHHHHhhhccccC-----cHHHhcc---cccCCccccccccccchhhHHh-----
Confidence 357888888888886532 999999999999887532 2222211 11111 111222222211
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHH
Q 008533 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRI 539 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~-~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~ 539 (562)
.... .+...+-|..-++..+++.|+|++ ..-...+..++..+++..+....||++.+++.+++.+.......++.
T Consensus 72 ~~~~----~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 72 MMGI----SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred hccC----CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 1110 111123344567888999999874 44456789999999988877779999999999999999877755557
Q ss_pred HHHHHHHHHHHH
Q 008533 540 VYDAIGTLADAV 551 (562)
Q Consensus 540 ~~~~l~~l~~~~ 551 (562)
.+.-++.++.-+
T Consensus 148 ~~~qL~~lv~iv 159 (160)
T PF11865_consen 148 YFQQLADLVSIV 159 (160)
T ss_pred HHHHHHHHHHHh
Confidence 888888777654
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.27 E-value=0.0049 Score=52.75 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHh-cC---cCchHHHHHHH------------HHHhccCChhHHhHHHHHHHHHhhcchhccc----
Q 008533 108 HIRSTVGTIVSVVVQL-GG---IAGWLELLQAL------------VTCLDSNDINHMEGAMDALSKICEDIPQVLD---- 167 (562)
Q Consensus 108 ~vr~~~~~~i~~i~~~-~~---~~~w~~ll~~l------------~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~---- 167 (562)
+||..+..++..+++. ++ .++|+.++|+- .-.+.|+++.+|.+|+.++..+.+.....+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 53 37999999864 3344678899999999999999998866542
Q ss_pred cc-CCCCCc-------chhHhhHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhch-hhH-HhchHHHHHHHhhhccCCCHH
Q 008533 168 SD-VPGLAE-------CPINIFLPRLLQFFQSP-HTSLRKLSLGSVNQFIMLMP-SAL-FVSMDQYLQGLFLLSNDPSAE 236 (562)
Q Consensus 168 ~~-~~~~~~-------~~~~~il~~l~~~l~~~-~~~vr~~al~~l~~~~~~~~-~~~-~~~~~~~l~~l~~~~~~~~~~ 236 (562)
.+ ...-|. ..+.++-..++..++.+ +..+....+||+..++...| ..+ .+.+..++..+...+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 011111 22233333455555554 66788899999999998665 112 123445566666667778899
Q ss_pred HHHHHHHHHHHHHhhCc
Q 008533 237 VRKLVCAAFNLLIEVRP 253 (562)
Q Consensus 237 ~~~~~~~~L~~l~~~~~ 253 (562)
++..++.+++.++...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 155
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.27 E-value=0.19 Score=48.09 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh----hhhHHHHHHHHhh-hcCCCChhHHHHHHHHHHHhHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIP-LLDDKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~----~~~l~~~~~~l~~-~l~d~~~~vr~~a~~~l~~l~~ 462 (562)
|.++..+..++.|+| .....++..++|.++..-.-.+ ..+++.++..+.+ .-.|.+.+++.+++.++.++.-
T Consensus 314 p~~l~~~~sw~~S~d---~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDD---SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCc---hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 568889999999988 8899999999999997653222 2445556665555 3346788999999999998875
Q ss_pred HHhhhcCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 463 FIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
-.++ ...+. ..+.+.++..++...|+|...-..++..+..
T Consensus 391 Pv~n------ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 391 PVSN------KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred cCCc------hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 3321 11222 3567777888877778887777777665554
No 156
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.0052 Score=65.50 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhc---C-cCchHHHHHHHHHHhcc----CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHH
Q 008533 112 TVGTIVSVVVQLG---G-IAGWLELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (562)
Q Consensus 112 ~~~~~i~~i~~~~---~-~~~w~~ll~~l~~~l~~----~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~ 183 (562)
..+..+..|+..+ + ..-...+.|.+.+.+++ ++|..+.+|..+|+.++.-... +...-+|
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~------------fces~l~ 963 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE------------FCESHLP 963 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH------------HHHHHHH
Confidence 4667777787764 3 34567888999998864 4789999999999998875443 3466788
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHH
Q 008533 184 RLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN 262 (562)
Q Consensus 184 ~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~ 262 (562)
.|+..+. ++++-+|..+.-+++.+.-..|. .++.+.+.++..+.|.++.+|+.++-.|..++-+.--.++.++.+
T Consensus 964 llftimeksp~p~IRsN~VvalgDlav~fpn----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e 1039 (1251)
T KOG0414|consen 964 LLFTIMEKSPSPRIRSNLVVALGDLAVRFPN----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE 1039 (1251)
T ss_pred HHHHHHhcCCCceeeecchheccchhhhccc----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH
Confidence 9999998 68899999999888887765433 356677888889999999999999999999887655555555555
Q ss_pred HHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 263 LFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 263 i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
+. .++.|++++++..|=.|+..+...
T Consensus 1040 MA----~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1040 MA----LCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred HH----HHhcCCcHHHHHHHHHHHHHhhhc
Confidence 44 367888999999999999999875
No 157
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.20 E-value=0.33 Score=49.45 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch------hhhhhhHHHHHHHHhhhcCC
Q 008533 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI------KGLYPHLSEIVAFLIPLLDD 444 (562)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~------~~~~~~l~~~~~~l~~~l~d 444 (562)
....+..++...|+-.+.+ +..+...+.+.. ...|-+-+-+++.+..... +.....+..++..+...+.|
T Consensus 282 islFl~kls~l~p~i~lrq-~~~~~~LLdses---~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D 357 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQ-YEHFDELLDSES---FTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD 357 (1128)
T ss_pred HHHHHHHHhhcCchHHHHH-HHHHHHHhcccc---hhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc
Confidence 4456666666655533333 355667787777 9999999999998886552 23344667788899999999
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
.+|.+|..|+.++..++..-. ....--+.+...+.++++|.+..||..|...++.++-
T Consensus 358 ~~py~RtKalqv~~kifdl~s------k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 358 TYPYTRTKALQVLEKIFDLNS------KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cchHHHHHHHHHHHHHHhCcc------cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999887532 2234457889999999999999999999999988864
No 158
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.18 Score=46.34 Aligned_cols=258 Identities=13% Similarity=0.119 Sum_probs=148.2
Q ss_pred ChhHHhH---HHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc--
Q 008533 144 DINHMEG---AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-- 218 (562)
Q Consensus 144 ~~~~~~~---al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-- 218 (562)
+.++|+. ...||..+++..... ....+++|.+..++..++..|+..+++.++.+++.+...-...
T Consensus 53 NenhrekttlcVscLERLfkakega----------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseil 122 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGA----------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEIL 122 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccch----------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHH
Confidence 3456666 566666666643321 2457789999999999999999999999999888654211111
Q ss_pred ---hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHH-------HHhhcCCCChhHHHHHhhhHHH
Q 008533 219 ---MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY-------MLQVNKDTDDDVALEACEFWHS 288 (562)
Q Consensus 219 ---~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~-------~~~~~~~~~~~v~~~a~~~l~~ 288 (562)
-..+++.++....+.|.++.+++.+.+..++... .. +..+++- +.+.....++-+|...++.+..
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikrialfp-aa----leaiFeSellDdlhlrnlaakcndiaRvRVleLIie 197 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AA----LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIE 197 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HH----HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHH
Confidence 1245566666677788999999999998876431 11 1112211 0011111233456667777766
Q ss_pred hhccc-cchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcH
Q 008533 289 YFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (562)
Q Consensus 289 ~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (562)
+.+.. ...+..+ -+.++..+..-|.-+++ --+
T Consensus 198 ifSiSpesaneck--kSGLldlLeaElkGteD---------------------------------------------tLV 230 (524)
T KOG4413|consen 198 IFSISPESANECK--KSGLLDLLEAELKGTED---------------------------------------------TLV 230 (524)
T ss_pred HHhcCHHHHhHhh--hhhHHHHHHHHhcCCcc---------------------------------------------eee
Confidence 65541 0111111 12233333222221110 024
Q ss_pred hhhHHHHHHHHHhhh-ccchhh--hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhc------chhhhhhhHHHHHHHH
Q 008533 368 RKCSAAALDVLSNVF-GDEILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG------CIKGLYPHLSEIVAFL 438 (562)
Q Consensus 368 r~~a~~~l~~l~~~~-~~~~~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~------~~~~~~~~l~~~~~~l 438 (562)
+-.+.+....++..- |.+.++ .+++.+...+...+++ +-.+.-+++.++.+... ..+.+...+...+...
T Consensus 231 ianciElvteLaeteHgreflaQeglIdlicnIIsGadsd-Pfekfralmgfgkffgkeaimdvseeaicealiiaidgs 309 (524)
T KOG4413|consen 231 IANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSD-PFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGS 309 (524)
T ss_pred hhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCC-cHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhh
Confidence 444556666665544 334433 4566666665533211 66666677777765532 2233444555566677
Q ss_pred hhhcCCCChhHHHHHHHHHHHhHHHH
Q 008533 439 IPLLDDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
+.+....+|....+|+.++|.+....
T Consensus 310 fEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 310 FEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHhhhcCCchHHHHHHHHHHhccCCc
Confidence 77777888999999999999998654
No 159
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.12 E-value=0.11 Score=49.38 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=88.2
Q ss_pred HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC
Q 008533 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (562)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 172 (562)
.+...+..++.+.+..||..+..++|..+-.+. +.-.+.++.+.+.++.++..++..|+.++..+...++...-.....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 334445578999999999999999999998763 3446677778888877788999999999999998877543211100
Q ss_pred -CCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 173 -LAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 173 -~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
..+.....++..+.+.+.+.+++++..|++.+..+...
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 00123466888889999999999999999999998763
No 160
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=97.06 E-value=0.17 Score=50.25 Aligned_cols=236 Identities=18% Similarity=0.202 Sum_probs=144.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhh-cCCChH----HHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYS-QFPDFN----NYLAFILARA--EGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~-~~~~~~----~~l~~il~~~--~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
=+.+++..+.|+|.. .|......|..++ +.++.. ..+..++.+- .+.....=.-...++...+...-..+.+
T Consensus 134 fi~~Ll~l~~S~D~r-ER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 134 FIKKLLELFDSPDPR-ERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHTTTSSTHH-HHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 356677777789999 9999999998855 344432 2233333210 0111111112334444555554345777
Q ss_pred hhHHHHHHHHhhhhhCC-chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
+.+..+...++.+.+.+ -......+..++..++..++ ..-..++..+.+.-=-+++.-....+.-+..+++..+...-
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHH
Confidence 88888888888888765 34556788999999998763 33445556665555455666666778888888887664311
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH--HHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHHHHHHH
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAA 244 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~ 244 (562)
......++..+..++++++..|-+.|+..+.+ ++..+.+.-...++.+.+.+.+.. ++-+..+|..+..+
T Consensus 292 -------~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~v 364 (409)
T PF01603_consen 292 -------QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNV 364 (409)
T ss_dssp -------HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 23567788888889999999999999987753 233322222223445566666644 46678999999999
Q ss_pred HHHHHhhCccchhhhH
Q 008533 245 FNLLIEVRPSFLEPHL 260 (562)
Q Consensus 245 L~~l~~~~~~~~~~~l 260 (562)
+..+.+..++.+....
T Consensus 365 l~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 365 LKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHTTSHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHH
Confidence 9999988887765533
No 161
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.06 E-value=0.059 Score=51.21 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=101.2
Q ss_pred chHHHHHHHH-HHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008533 128 GWLELLQALV-TCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (562)
Q Consensus 128 ~w~~ll~~l~-~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (562)
...++++.|+ ..++++++.+|..|+.|||-.+---.. ...+.++.+.+.++..+..++..|++++..
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------------~a~~~l~l~~~~~~~~~~~v~~~al~~l~D 90 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE------------LAKEHLPLFLQALQKDDEEVKITALKALFD 90 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3347776665 778889999999999999988765432 346678888888877789999999999998
Q ss_pred HHhhchh-hHH--------hchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccch-hhhHHHHHHHHHhhcCCCCh
Q 008533 207 FIMLMPS-ALF--------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDD 276 (562)
Q Consensus 207 ~~~~~~~-~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~l~~i~~~~~~~~~~~~~ 276 (562)
++..-+. .+. .....+++.+...+.+.+++++..+++.++++.-...-.- ...+..++-....-....+.
T Consensus 91 ll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~ 170 (298)
T PF12719_consen 91 LLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQ 170 (298)
T ss_pred HHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcH
Confidence 8765332 111 1123566777777777788999999999999764432111 12233333222222233345
Q ss_pred hHHHHHhhhHHHhhcc
Q 008533 277 DVALEACEFWHSYFEA 292 (562)
Q Consensus 277 ~v~~~a~~~l~~~~~~ 292 (562)
.+|..---|+-.++..
T Consensus 171 ~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 171 RLRQCLSVFFPVYASS 186 (298)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 5666555566666654
No 162
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.01 E-value=0.014 Score=62.71 Aligned_cols=177 Identities=19% Similarity=0.227 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHhhhccch---hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC
Q 008533 368 RKCSAAALDVLSNVFGDEI---LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~---~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d 444 (562)
|+.|.-+|..+++.+|+.. +|.+.+.+..-++..-..+ ..-...+..+..+...+...+.+ +.+.+|.++.++..
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRS 827 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhccc
Confidence 7778899999999998843 4566665555554321100 01112222333333333344444 66778889999999
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH-HHHHccccccccHHHHHH
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT-LEEEAAEELAPRLEIILQ 523 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~-l~~~~~~~~~~~l~~il~ 523 (562)
.++.+|.+|+.+++.+.+... .+....+++.++..+++....++..++..+.. +.......+.||.+-++.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~--------~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSAT--------RETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 999999999999999998643 45566777777777877666666655555544 444456778899999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 008533 524 HLMMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 524 ~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (562)
.|+..+.+..+.++..+.++.+.++-.++-+
T Consensus 900 pllr~msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhcccccc
Confidence 9999999888877789999999888777644
No 163
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.028 Score=57.12 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
++++..|..+.. ...+.. .....-..||..|--+..|.+..||+.+..+|+-+.-.+ |+.+|...++++
T Consensus 530 dkdpilR~~Gm~--t~alAy----~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLs 598 (929)
T KOG2062|consen 530 DKDPILRYGGMY--TLALAY----VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLS 598 (929)
T ss_pred CCchhhhhhhHH--HHHHHH----hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHh
Confidence 668888854432 222221 122233456655555688999999999999999887765 566666777776
Q ss_pred c-CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH
Q 008533 142 S-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD 220 (562)
Q Consensus 142 ~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~ 220 (562)
. -++.+|-++-.+|+..|..-+. ...+..|-....|+..-||+.|+-++.-+..-..+...+...
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~--------------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGL--------------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCc--------------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 4 4899999999999999887654 334445555667888899999998887765544333444444
Q ss_pred HHHHHHhhhccCCCHHH
Q 008533 221 QYLQGLFLLSNDPSAEV 237 (562)
Q Consensus 221 ~~l~~l~~~~~~~~~~~ 237 (562)
.+-+.+.+.+.+..++.
T Consensus 665 ~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHHhhhhhhHH
Confidence 44555555554444433
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.01 E-value=0.35 Score=46.28 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=118.3
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCc-----------CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh-
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI-----------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ- 164 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-----------~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~- 164 (562)
.|+..|..-+-..|+.++.+.+.+...... ..||+++..|..+-.+++...- +-..|+..++.-.-
T Consensus 80 ~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 80 LLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHH
T ss_pred HHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHH
Confidence 344445444555667777777777665311 3568888888888876654222 22234444432110
Q ss_pred -cccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch----hhHHhchHHHHHHHhhhccCCCHHHHH
Q 008533 165 -VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP----SALFVSMDQYLQGLFLLSNDPSAEVRK 239 (562)
Q Consensus 165 -~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~ 239 (562)
.+. ....+-.+++.++.++-+|...|+.++..+....+ +.+..+.+.++...-.++.+++--+|+
T Consensus 158 ~~iL----------~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 158 KIIL----------YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HHHH----------TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHHh----------CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 010 02233347788889999999999999998776433 445667777777777788888889999
Q ss_pred HHHHHHHHHHhhC--ccchhhhHH--HHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc
Q 008533 240 LVCAAFNLLIEVR--PSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL 294 (562)
Q Consensus 240 ~~~~~L~~l~~~~--~~~~~~~l~--~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~ 294 (562)
++++.|+.+.... ...+..|+. +-+..+...+++....++..|+.++.-++..+.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999987653 344455553 455666678899999999999999998877744
No 165
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.01 E-value=0.41 Score=47.18 Aligned_cols=193 Identities=13% Similarity=0.080 Sum_probs=109.9
Q ss_pred CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc---cCChh--hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHH
Q 008533 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK---SMSPS--NQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (562)
Q Consensus 47 ~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~---~l~~~--~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~ 121 (562)
|.+...++.++.. ...+.+.+....++-..+...-. .+.+. .....-..++..|..++..+...++.+++.++
T Consensus 52 ~~y~~~~l~ll~~--~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 52 GQYVKTFVNLLSQ--IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 5677778888875 77788888888877777654211 00000 00111234555677788999999999999998
Q ss_pred HhcCcC----chHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CH
Q 008533 122 QLGGIA----GWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HT 194 (562)
Q Consensus 122 ~~~~~~----~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~ 194 (562)
...+.. .-+.+++.+...++++ +...+..++.+|..++..-.... .| .-...++.+...++.. +.
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~------~f--~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF------AF--VLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH------HH--HHccCHHHHHHHHhhccccH
Confidence 764322 2233555666666654 35677788899988887644421 00 0012455566656542 34
Q ss_pred HHHHHHHHHHHHHHhhchhhHHhch--HHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhh
Q 008533 195 SLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~ 251 (562)
++.-.++-|+.-+.-. ++ ....+ ..+++.+...++. .-+.+-+-++.+|..++..
T Consensus 202 Ql~Y~~ll~lWlLSF~-~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 202 QLQYQSIFCIWLLTFN-PH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHHHHHHHHHHhcc-HH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 5555665555544322 21 11111 2345555555442 3356666667777776664
No 166
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.95 E-value=0.71 Score=48.96 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
..+|.-++..++.++-...+ .....+|.+.+.|. .....||.+.+-+++-+|..+. ...+.-+|.+
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT---------am~d~YiP~I 1011 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT---------AMTDRYIPMI 1011 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH---------HHHHHhhHHH
Confidence 45677777778777654432 23446788888886 4568899999999999988753 3445667778
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
..+|.|+++.||..+...|.+++..
T Consensus 1012 ~~~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1012 AASLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999998864
No 167
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.94 E-value=0.0025 Score=54.00 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-ccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HHHHh
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEE-AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL---ADAVG 552 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~-~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l---~~~~~ 552 (562)
++..++.++..|.+.....+.-|...+..+++. .++.+.|.+++++..+...++..+.++...++.+|..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 567888999999888778889999999999999 68899999999999999999999999999999999888 88888
Q ss_pred hhhhccccC
Q 008533 553 FELNQVLLS 561 (562)
Q Consensus 553 ~~~~~~~~~ 561 (562)
+ +..|||+
T Consensus 116 ~-aLvPyyr 123 (183)
T PF10274_consen 116 E-ALVPYYR 123 (183)
T ss_pred H-HHHHHHH
Confidence 5 4499985
No 168
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.076 Score=55.04 Aligned_cols=246 Identities=13% Similarity=0.130 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHHHHhhCccc-hhh-hHHHHHHHHHhhcCCC-ChhHHHHHhhhHHHhhccccchhhHHhhhh-HHHHH
Q 008533 234 SAEVRKLVCAAFNLLIEVRPSF-LEP-HLRNLFEYMLQVNKDT-DDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPV 309 (562)
Q Consensus 234 ~~~~~~~~~~~L~~l~~~~~~~-~~~-~l~~i~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~-~l~~~ 309 (562)
|+..+..++.-|+++.....+. +.. -++.++|.+...++++ ..++...|+..+..+++. .++...-.++ ..+|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPv 258 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPV 258 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchhheeecccchHH
Confidence 6666555655565554433322 211 2357888888877663 478999999999999987 2222211111 25566
Q ss_pred HHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh-
Q 008533 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP- 388 (562)
Q Consensus 310 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~- 388 (562)
++..+...+ || .+..-+.++|..|+..-+..++.
T Consensus 259 l~~kL~~Ie-------------------yi--------------------------DvAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 259 LLEKLLTIE-------------------YI--------------------------DVAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred HHHhhhhhh-------------------hh--------------------------HHHHHHHHHHHHHHhhccHHHHhc
Confidence 655443211 11 14444677788887766554442
Q ss_pred -hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 389 -TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 389 -~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
.++- +..++.--. -.....|+...+.++..+..+-..++-..+|.+.+.|...+..+...+|-++.++++.+.+.
T Consensus 294 G~l~a-~LsylDFFS---i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 294 GALSA-VLSYLDFFS---IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred ccHHH-HHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 2222 222222111 33445566666667766654334677788999999999989999999999999999987642
Q ss_pred cCCCcchhh-HHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHHcccccc-ccHHHHHHHHHHHHhhh
Q 008533 468 IGHQNGREQ-FEKVLMGLLKRILDTN----KRVQEAACSAFATLEEEAAEELA-PRLEIILQHLMMAFGKY 532 (562)
Q Consensus 468 ~~~~~~~~~-~~~il~~l~~~l~d~~----~~vr~~a~~al~~l~~~~~~~~~-~~l~~il~~L~~~l~~~ 532 (562)
|....+. -+.++....+.+.-+. ..+.......+..++..++..+. -+...|...|..++..+
T Consensus 370 --~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 370 --PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred --hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 1111111 1345555555544322 23333344444444444333222 34456666666666554
No 169
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.23 Score=50.70 Aligned_cols=183 Identities=18% Similarity=0.148 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
.+..+.+-..+++...+++..||...+++|+.+.... ...-++.+...+...+.+..|.+|.-|+.+|.++-..-.+
T Consensus 80 ~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 80 EDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3444555555666666789999999999999998732 2345677778888888899999999999999887653322
Q ss_pred cccccCCCCCcchhHhhHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhchhhHH------------------hc-------
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQFIMLMPSALF------------------VS------- 218 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~~~~~~~~~~~------------------~~------- 218 (562)
++ ..+...+...+ +|++++||.+|+.++..=-...|-.+. +.
T Consensus 160 ---ee---------~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~ls 227 (892)
T KOG2025|consen 160 ---EE---------CPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLS 227 (892)
T ss_pred ---Cc---------ccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhh
Confidence 11 12333344444 468999999999877532222221100 00
Q ss_pred hHHHHHHHhhhccCCCHHHHHHHHHHHHH-HHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNL-LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~-l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
+..-+..+-..+.+.+..++.++.+.+.. ..+. .-..+++.+-+..-+.+.+++..+++.+...
T Consensus 228 i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~-------~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 228 IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF-------SDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh-------ccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11112222233455566666666555533 1111 1124555555555556667888888877763
No 170
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.80 E-value=0.11 Score=56.41 Aligned_cols=143 Identities=16% Similarity=0.120 Sum_probs=110.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhh-----hC-----CchHHHHHHHHHHHHHHHhcCcCchH
Q 008533 61 EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-----GA-----ADRHIRSTVGTIVSVVVQLGGIAGWL 130 (562)
Q Consensus 61 ~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l-----~~-----~~~~vr~~~~~~i~~i~~~~~~~~w~ 130 (562)
.+....+|+-+++.++..++.+...++.+..+.+.-+++-.+ .+ --..||..-+++++.+.+........
T Consensus 87 ~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~ 166 (1549)
T KOG0392|consen 87 FEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIK 166 (1549)
T ss_pred cCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhH
Confidence 377899999999999999999888877655554444443322 22 13468999999999999987666777
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
+.+..+.+++..+.+..|++++..+.+......+.+ ....+.+++.+..++.|.+..|+..|.+.+......
T Consensus 167 ~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l--------~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~ 238 (1549)
T KOG0392|consen 167 ETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLL--------FQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSI 238 (1549)
T ss_pred HHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHH
Confidence 888888899999999999999999988776333222 135677888899999999999999998888776554
Q ss_pred c
Q 008533 211 M 211 (562)
Q Consensus 211 ~ 211 (562)
.
T Consensus 239 ~ 239 (1549)
T KOG0392|consen 239 Q 239 (1549)
T ss_pred H
Confidence 3
No 171
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.79 E-value=0.43 Score=44.07 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=143.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCccc-h-hhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhH
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSF-L-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~-~-~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~ 305 (562)
..+.++|+.+|..++.+|..+.+..+.. + .....-++.+....+. |......++..+..+.+.+... ......
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~---~~~~~~ 80 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFS---PESAVK 80 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCC---hhhHHH
Confidence 3456778999999999999998887642 3 3345567777777664 3444555677777777543221 112223
Q ss_pred HHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc
Q 008533 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (562)
Q Consensus 306 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (562)
++..+....... .-..+.|..+-+.+..+.......
T Consensus 81 i~~~l~~~~~~q--------------------------------------------~~~q~~R~~~~~ll~~l~~~~~~~ 116 (262)
T PF14500_consen 81 ILRSLFQNVDVQ--------------------------------------------SLPQSTRYAVYQLLDSLLENHREA 116 (262)
T ss_pred HHHHHHHhCChh--------------------------------------------hhhHHHHHHHHHHHHHHHHHhHHH
Confidence 333332211100 001135777777777777665432
Q ss_pred h---hhhhHHHHHHHHcC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc--------CCCChhHHHHH
Q 008533 386 I---LPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL--------DDKFPLIRSIS 453 (562)
Q Consensus 386 ~---~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l--------~d~~~~vr~~a 453 (562)
+ -+.++..+.+.+.. .| ++.-.-++..+..+..... +.++.+++...+.-.+ +|+....|..-
T Consensus 117 l~~~~~~fv~~~i~~~~gEkD---PRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edL 191 (262)
T PF14500_consen 117 LQSMGDDFVYGFIQLIDGEKD---PRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDL 191 (262)
T ss_pred HHhchhHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHH
Confidence 1 12344444444443 45 8887777777777776654 2556666666554433 23322222222
Q ss_pred HHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-ccccccHHHHHHHHHH
Q 008533 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLEIILQHLMM 527 (562)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~~~~~~l~~il~~L~~ 527 (562)
...+ -..+. ....+-+..++.++..|.++.+.+|..+..+|...+...+ ..+.+|...+++.|..
T Consensus 192 k~~L---~~cl~------s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 192 KRAL---RNCLS------STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHH---HHHhc------CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 2222 22221 1345667889999999999999999999999998888774 5688999999888754
No 172
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.77 E-value=0.28 Score=50.05 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcC----CCCH-HHHHHHHHHHHHhhc-C--CChHH-HHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 14 FNEICRLLEQQIS----PSST-ADKSQIWQQLQQYSQ-F--PDFNN-YLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 14 ~~~l~~~l~~~~s----~d~~-~~r~~A~~~L~~~~~-~--~~~~~-~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
.+++.+++.-++- +... ++-+-+....+.+.+ + .+++. .+-++|.....++-.+|.-...++..... .-.
T Consensus 39 ~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~ 117 (892)
T KOG2025|consen 39 SEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENA 117 (892)
T ss_pred HHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-ccc
Confidence 3566666664422 1111 233444444444443 2 23554 44556665556788999888777766654 345
Q ss_pred cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc-cCChhHHhHHHHHHH
Q 008533 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGAMDALS 156 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~~~~al~~l~ 156 (562)
.++++..+.+...++..+.+..+.||..|..+++.+-.... +.=-++...+...++ ++++.+|.+++.++.
T Consensus 118 eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~-dee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 118 EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK-DEECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 68899999999999999999999999999999998875432 222334555555565 578999999988764
No 173
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.031 Score=52.25 Aligned_cols=142 Identities=15% Similarity=0.041 Sum_probs=94.0
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGL 484 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l 484 (562)
...|+.|+--|-.+++.+.....-.--..+..++..++++++.+|..|+|+||..+..-|.. ....+ ...++.|
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS-----QEQVIELGALSKL 171 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH-----HHHHHHcccHHHH
Confidence 88999999999988887643211111123444445889999999999999999998865431 22222 2355666
Q ss_pred HHHhc-cCCHHHHHHHHHHHHHHHHHccccccccHH-HHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHh
Q 008533 485 LKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 485 ~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~l~-~il~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~ 552 (562)
+..+. +++-.+|..|..|++.++.+-+.....++. .=+..|.++++.. +.+.++.++..++.+.+...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 66664 446788999999999999987543333321 1266677777774 33455677777777766544
No 174
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.67 E-value=0.77 Score=45.34 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=50.3
Q ss_pred HHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 433 EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 433 ~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
+++..+...|. +.+|.+...||.=||.++.+.|. ....+.. .=..++..+.++++.||..|..|+..+.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 35566666663 56788889999999999998763 1222222 3444667778899999999999999875
No 175
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.14 Score=52.00 Aligned_cols=199 Identities=17% Similarity=0.182 Sum_probs=121.3
Q ss_pred HhhccCChhhHHHHHHHHhhhhh-----CC----chHHHHHHHHHHHHHHHhc-CcCchHHHH-----HHHHHHhccCCh
Q 008533 81 TAYKSMSPSNQQYIKSELLPCLG-----AA----DRHIRSTVGTIVSVVVQLG-GIAGWLELL-----QALVTCLDSNDI 145 (562)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~-----~~----~~~vr~~~~~~i~~i~~~~-~~~~w~~ll-----~~l~~~l~~~~~ 145 (562)
+.|...+-+..+.|-+-.++.+. -+ ...+|+.+ +..+..- ..+...+++ |.|...++..+.
T Consensus 113 rAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl----~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns 188 (1005)
T KOG1949|consen 113 RAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVL----SYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNS 188 (1005)
T ss_pred HHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCch
Confidence 45776665666666555555332 12 23455544 4443321 122333433 567777888888
Q ss_pred hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH----HHHhhchhhHHhchHH
Q 008533 146 NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN----QFIMLMPSALFVSMDQ 221 (562)
Q Consensus 146 ~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~----~~~~~~~~~~~~~~~~ 221 (562)
.+|..|..++-.+..-.++.... ..++..++.-...+..++.|+-+.||..|.+-+. .+-..+|+... -.
T Consensus 189 ~VrsnAa~lf~~~fP~~dpd~~~---e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~---~~ 262 (1005)
T KOG1949|consen 189 EVRSNAALLFVEAFPIRDPDLHA---EEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL---ID 262 (1005)
T ss_pred hhhhhHHHHHHHhccCCCCCccH---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH---HH
Confidence 99999988876655443332110 0113455666677889999999999987765444 44445664332 12
Q ss_pred HHHHHhh-hccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 222 YLQGLFL-LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 222 ~l~~l~~-~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
++..++. ...+...++|..++++|..++.+.-.. +.++.++|.+-..+.|+.+.||..+.+.+..+-.
T Consensus 263 ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh--~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 263 LLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH--PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHhhhccchheehhHhcCcHHHHcCccch--hHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 2333332 234556789999999999988765443 5567777766667888889999888777766533
No 176
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.58 E-value=0.15 Score=47.85 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=100.2
Q ss_pred HHHHHHhccCCh-hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 134 QALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 134 ~~l~~~l~~~~~-~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
..|.+|++..-| -+...|+++...|++.++..--. ..+.-..+.++.++......||..-++.+..+..-++
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~-------~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~ 129 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLA-------QDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLG 129 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHH-------hhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 344444443322 45567899999999988764221 2456678888888888888999999999998887777
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
+.+.+.+..++..++..+.++..+....+++.+..+.....+. .+.+.++.++- ..+++|..|+.++..-
T Consensus 130 ~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~------~F~~~lwl~ii-~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 130 PALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK------YFWQCLWLCII-TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh------HHHHHHHHHHh-cCcchhHHHHHHHHHh
Confidence 7778888888899988888888889999999988888765543 12222222211 2456788888766543
No 177
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=96.54 E-value=0.13 Score=42.95 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=87.9
Q ss_pred HHHHHHhhhhhCC--chHHHHHHHHHHHHHHHhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHh-hcchhcc
Q 008533 93 YIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKIC-EDIPQVL 166 (562)
Q Consensus 93 ~i~~~ll~~l~~~--~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~-~~~~~~~ 166 (562)
.||+.|+.+|..+ ....-+.++.+++.++..- ..+.|+++.+.+.... .+++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 4788888988643 3445555666666666542 5689999997776654 2223 45666666655 2222222
Q ss_pred cccCCCCCcchhHhhHHHHHHhhcCCC---HHHHHHHHH-HHHHHHhhch-----hhHHhchHHHHHHHhhhccCCCH-H
Q 008533 167 DSDVPGLAECPINIFLPRLLQFFQSPH---TSLRKLSLG-SVNQFIMLMP-----SALFVSMDQYLQGLFLLSNDPSA-E 236 (562)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~---~~vr~~al~-~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~-~ 236 (562)
.+.++.++|.+.+.|.++. .+....|+. ++...+..+. +.+.+.++.+++.+..+...+.+ .
T Consensus 79 --------~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 79 --------IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVG 150 (174)
T ss_pred --------HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 3567889999999998873 333445553 3333444332 23334455566666666655555 6
Q ss_pred HHHHHHHHHHHHHhh
Q 008533 237 VRKLVCAAFNLLIEV 251 (562)
Q Consensus 237 ~~~~~~~~L~~l~~~ 251 (562)
....+++-+..++..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666554
No 178
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.75 Score=47.06 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=81.3
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHh
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
..-+..+..++.++- +.+|..|...+..+....=+-+ ...+..++..|+..+. |....||.++...+..+...-
T Consensus 219 ~kQf~~l~~LL~d~~---p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np- 294 (1005)
T KOG1949|consen 219 QKQFEELYSLLEDPY---PMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP- 294 (1005)
T ss_pred HHHHHHHHHHhcCCC---chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc-
Confidence 344566777888887 9999999988877765442222 2345566777777664 777899999988888877542
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
.-.+.++.+++.+-..|+|++.+||.++...|..+-
T Consensus 295 ------~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 ------LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred ------cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 235678889998888999999999999888877653
No 179
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.44 E-value=1.3 Score=45.14 Aligned_cols=291 Identities=13% Similarity=0.064 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHH
Q 008533 108 HIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (562)
Q Consensus 108 ~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (562)
..|-.++.-++......+....+++......++..+ ....|++++..+..+++.-...... .-..++..+.
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~--------~R~~fF~~I~ 76 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGL--------MRAEFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHH--------HHHHHHHHHh
Confidence 346667777777776655556666666666666554 3578999999999998875542111 1122222222
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhc---hhhHHhchHHHHHHHhhhc-------c-------------CCCHHHHHHHHH
Q 008533 187 QFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQGLFLLS-------N-------------DPSAEVRKLVCA 243 (562)
Q Consensus 187 ~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~-------~-------------~~~~~~~~~~~~ 243 (562)
.--.+++-..+..|+.+|..=...+ ...+.+.+-.++..+++.. + +.+.......+.
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Confidence 2212223456677777665433322 1223344445555444210 0 012334455666
Q ss_pred HHHHHHhhCccchh-hhHHHHHHHHHhh-cCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhH
Q 008533 244 AFNLLIEVRPSFLE-PHLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (562)
Q Consensus 244 ~L~~l~~~~~~~~~-~~l~~i~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~ 321 (562)
.+..+++.....+. ..+..++..+... .+...++.-..++.++.++......+ ...+..++.+|-......
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP---~~sl~~~i~vLCsi~~~~---- 229 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP---SESLSPCIEVLCSIVNSV---- 229 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC---hHHHHHHHHHHhhHhccc----
Confidence 77777766554444 4455556555544 33333333467777777776642111 122334444432211100
Q ss_pred hhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh-hccchhhhhHHHHHHHHcC
Q 008533 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-FGDEILPTLMPVIQAKLSA 400 (562)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~-~~~~~~~~l~~~l~~~l~~ 400 (562)
+....+-+++..|+.. .|. ..+..+...+.+
T Consensus 230 --------------------------------------------~l~~~~w~~m~nL~~S~~g~----~~i~~L~~iL~~ 261 (464)
T PF11864_consen 230 --------------------------------------------SLCKPSWRTMRNLLKSHLGH----SAIRTLCDILRS 261 (464)
T ss_pred --------------------------------------------ccchhHHHHHHHHHcCccHH----HHHHHHHHHHcc
Confidence 0122233455555532 233 333444444421
Q ss_pred CC---CCCchhHHHHHHHHHHHhhcchhhhh----hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 401 SG---DEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 401 ~~---~~~~~~r~aal~~l~~i~~~~~~~~~----~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
++ ..+...-.+|+..++.+.-+.++.-. -....++|.+...++.+++.|-...+..+.++.
T Consensus 262 ~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 262 PDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 11 12266777999999988876632211 122348899999999888888888888887777
No 180
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.43 E-value=0.059 Score=41.98 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=68.9
Q ss_pred HhchHHHHHHHhhhccC----CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 216 FVSMDQYLQGLFLLSND----PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 216 ~~~~~~~l~~l~~~~~~----~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
.+++-.++..+-..+.+ .+..-++.++..+..+++..+..+....++++-.+...+..+ +++..|+++|..+.+
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 34444444444333332 445778899999999999888888888888887776665544 789999999999988
Q ss_pred cccchhhHHhhhhHHHHHHHhhc
Q 008533 292 AQLPHENLKEFLPRLVPVLLSNM 314 (562)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l 314 (562)
. -..+.+.+.++.++..+++.+
T Consensus 84 ~-L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 84 T-LDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred H-CCHHHHHHHHHHHHHHHHHhc
Confidence 6 224667788888887776653
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.41 E-value=0.11 Score=53.06 Aligned_cols=189 Identities=16% Similarity=0.126 Sum_probs=123.2
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHH
Q 008533 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLK 300 (562)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 300 (562)
.+++.+.++.+..|..+|...++-+..+++...+. .+-++++|.+..++.|.++.+|..++.++..++.. ....
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~--~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k--L~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQ--ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK--LSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHH--hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh--hchh--
Confidence 46778888888888999998888888888776653 33468999999999999999999999988888764 1110
Q ss_pred hhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHh
Q 008533 301 EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSN 380 (562)
Q Consensus 301 ~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~ 380 (562)
.+-.-+++++... +.+ + +-.+|--..-|++.++.
T Consensus 404 ----~Ln~Ellr~~ar~----------------------------------q~d--~------~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 404 ----NLNGELLRYLARL----------------------------------QPD--E------HGGIRTNTTICLGKIAP 437 (690)
T ss_pred ----hhcHHHHHHHHhh----------------------------------Ccc--c------cCcccccceeeeccccc
Confidence 1111112222100 000 0 01233334446666555
Q ss_pred hhccchhh-hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 008533 381 VFGDEILP-TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (562)
Q Consensus 381 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (562)
........ .+.....+.+.++- ...|.+++..+....+... ....-.+++|.+.+...|++..||..|..++..
T Consensus 438 ~l~~~~R~~vL~~aftralkdpf---~paR~a~v~~l~at~~~~~--~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTRALKDPF---VPARKAGVLALAATQEYFD--QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccchhhhccccchhhhhhhcCCC---CCchhhhhHHHhhcccccc--hhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 54221111 22223334566666 7789999998887776553 234456688888888899999999999999888
Q ss_pred hHHHHhh
Q 008533 460 FSKFIVQ 466 (562)
Q Consensus 460 l~~~~~~ 466 (562)
+.....+
T Consensus 513 fl~kl~~ 519 (690)
T KOG1243|consen 513 FLEKLEK 519 (690)
T ss_pred HHhhhhh
Confidence 8766543
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.053 Score=53.50 Aligned_cols=122 Identities=19% Similarity=0.145 Sum_probs=85.5
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
-.+|.||..+||-++-.-.+ .++..++.|. +.++.||...+.++|-.|..-+ ....-.++..
T Consensus 566 DDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--------~~~a~diL~~- 628 (926)
T COG5116 566 DDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG--------DKVATDILEA- 628 (926)
T ss_pred hHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--------cHHHHHHHHH-
Confidence 56777877777766543322 3444455555 4578899999988887776432 2223334443
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~ 546 (562)
.+.|++.-||..|+.+++.+.-.+.+.+.|.+..|.+.+..++.+..+..+...--+++.
T Consensus 629 --L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laq 688 (926)
T COG5116 629 --LMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQ 688 (926)
T ss_pred --HhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 446888999999999999999999999999999999999999887655444443334433
No 183
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.66 Score=48.10 Aligned_cols=114 Identities=19% Similarity=0.102 Sum_probs=82.9
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhh---hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP---HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~---~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
..+..+.+.+...| ..+|..|+..+.++...-+..+.. ..|.-+..++..|.|....||..|+..+..+.+..+
T Consensus 122 d~I~lll~~~e~~D---F~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 122 DNITLLLQSLEEFD---FHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred hhHHHHHHHHHhhc---hhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 44566667777778 999999999999998876544433 345567788889999999999999999999987644
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHH
Q 008533 466 QDIGHQNGREQFEKVLMGLLKRILDT----NKRVQEAACSAFATLEEE 509 (562)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l~d~----~~~vr~~a~~al~~l~~~ 509 (562)
.- ..---++.++..|+..+... ...|-.-+...|.++++.
T Consensus 199 ~I----QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 199 SI----QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred hH----HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 21 01223566677777666543 246777788888888865
No 184
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.37 E-value=0.091 Score=53.55 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=131.5
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCC
Q 008533 259 HLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (562)
Q Consensus 259 ~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (562)
|-..++|.+++..+..|..+|..-++-+-.+... ..+ ..+-++++|++..-+..++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~--~~~~d~I~phv~~G~~DTn-------------------- 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTK--QILNDQIFPHVALGFLDTN-------------------- 382 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCH--HhhcchhHHHHHhhcccCC--------------------
Confidence 5567888999999999999999888877777665 111 1123456666654433111
Q ss_pred CCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc-hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHH
Q 008533 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (562)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~ 417 (562)
-++|.....++..++..++.. .-..++.++...-.+++ ...|--.-.|+|
T Consensus 383 --------------------------~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~---~~irtntticlg 433 (690)
T KOG1243|consen 383 --------------------------ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH---GGIRTNTTICLG 433 (690)
T ss_pred --------------------------HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc---Ccccccceeeec
Confidence 157777888888888888764 33466666665555555 566766777888
Q ss_pred HHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHH
Q 008533 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (562)
Q Consensus 418 ~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~ 497 (562)
.++.........- -+.......+.|+-+.-|.++.+++....+.+. ..+.-.+|++.+.....|++..||.
T Consensus 434 ki~~~l~~~~R~~--vL~~aftralkdpf~paR~a~v~~l~at~~~~~-------~~~va~kIlp~l~pl~vd~e~~vr~ 504 (690)
T KOG1243|consen 434 KIAPHLAASVRKR--VLASAFTRALKDPFVPARKAGVLALAATQEYFD-------QSEVANKILPSLVPLTVDPEKTVRD 504 (690)
T ss_pred ccccccchhhhcc--ccchhhhhhhcCCCCCchhhhhHHHhhcccccc-------hhhhhhhccccccccccCcccchhh
Confidence 8877653322111 122334446889999999999999888887764 4566678888888888888999999
Q ss_pred HHHHHHHHHHHHc
Q 008533 498 AACSAFATLEEEA 510 (562)
Q Consensus 498 ~a~~al~~l~~~~ 510 (562)
.|..++..+....
T Consensus 505 ~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 505 TAEKAIRQFLEKL 517 (690)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999888665
No 185
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.32 E-value=0.51 Score=46.86 Aligned_cols=176 Identities=19% Similarity=0.329 Sum_probs=107.6
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcC--------CCChhHHHHHhhhHHHhhc
Q 008533 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK--------DTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~--------~~~~~v~~~a~~~l~~~~~ 291 (562)
..+++.+.+.+-+.++..|..+++.|.. .+-+++++|++...+. ..+-..-.+.+....++..
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T---------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET---------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc---------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 3344555555455778889988888743 1223444444433221 1333444556666666666
Q ss_pred cccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhH
Q 008533 292 AQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCS 371 (562)
Q Consensus 292 ~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a 371 (562)
++.. .+.+|+..|+|.++.++....- ..+| + .+.+|.+|..|
T Consensus 277 Np~i--~lepYlh~L~PSvlTCvVsk~l------------------~~~p-------------~-----~dnhwaLRDfA 318 (576)
T KOG2549|consen 277 NPNI--FLEPYLHQLVPSVLTCVVSKNL------------------CLRP-------------E-----LDNHWALRDFA 318 (576)
T ss_pred CCcc--chhhHHHHHhhHHHHhhhhhhc------------------cCCc-------------c-----ccchHHHHHHH
Confidence 6432 4668888888888777642110 0000 0 12379999999
Q ss_pred HHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh-hhhhhHHHHHHHHhhhcC
Q 008533 372 AAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-GLYPHLSEIVAFLIPLLD 443 (562)
Q Consensus 372 ~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~-~~~~~l~~~~~~l~~~l~ 443 (562)
..++..++..++. .+-+.++.++...+.++. ..|...++++..|..+.....+ .+.+.+......+.+.+.
T Consensus 319 A~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~-~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNNLQPRITRTLSKALLDNK-KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 9999999999986 344667777777776652 3399999999999988764432 234555555555555544
No 186
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.29 E-value=0.092 Score=39.41 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=61.2
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (562)
.+..++..+.|+.+.||..++..+.++.+.-. ......+.++..++..|+|+++-|-.+|..++..++...+.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~------~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS------EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC------cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 35566777899999999999999999988532 13456789999999999999999999999999999987653
No 187
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.29 E-value=0.1 Score=49.03 Aligned_cols=145 Identities=13% Similarity=0.175 Sum_probs=101.4
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcc---cccCCCCCcchhHhhHHHHHHhhc--------CCCH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL---DSDVPGLAECPINIFLPRLLQFFQ--------SPHT 194 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~---~~~~~~~~~~~~~~il~~l~~~l~--------~~~~ 194 (562)
...|+-++|.+...+.+.++..|..|+.+|..++...+... -.. .| ..+.+.+.+..++. +...
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~-tG----l~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRR-TG----LFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-cC----hHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 46899999999999999999999999999999999877543 111 12 23444555555555 3456
Q ss_pred HHHHHHHHHHHHHHhhchh----hHHhchHHHH-HHHhhh----ccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 008533 195 SLRKLSLGSVNQFIMLMPS----ALFVSMDQYL-QGLFLL----SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~----~~~~~~~~~l-~~l~~~----~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~ 265 (562)
.+-..|..|+..++..... .-...+..++ +.+++. .+.+.+.++...++.+..++...+.....|++.+++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6778888898888664310 1111222222 223332 222358899999999999999999888999999999
Q ss_pred HHHhhcCCCC
Q 008533 266 YMLQVNKDTD 275 (562)
Q Consensus 266 ~~~~~~~~~~ 275 (562)
.+.+.+.+.+
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9888766543
No 188
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=3.2 Score=47.84 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=127.2
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh---cCCChHHHHHH----HHhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAF----ILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~---~~~~~~~~l~~----il~~~~~~~~~~R~~a~~~lk~~i~~~w~~ 85 (562)
....+......+.++++- .|-.|.+.+.++. .++.|+..+.+ -+.+ ..++..| ..-.+..-.+.+.-..
T Consensus 874 ~~~~~~l~~~sl~~~~p~-~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas--~~d~i~R-~ghslalg~lhkyvgs 949 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPK-LRCAAAEALARLAQVVGSAPFVASLAQNSFDKLAS--ARDPITR-TGHSLALGCLHKYVGS 949 (2067)
T ss_pred HHHHHHHHhhhhccCChH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh--cCCcHHH-HHHHHHHHHHHHhccC
Confidence 334455666677788888 8888888888755 35556554444 3443 4455555 4555444455444444
Q ss_pred CChhh-HHHHHHHHhhhhhCC-chHHHHHHHHHHHHHHHhcCcCchHHH---HHHHHHHhccC---ChhHHhHHHHHHH-
Q 008533 86 MSPSN-QQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLEL---LQALVTCLDSN---DINHMEGAMDALS- 156 (562)
Q Consensus 86 l~~~~-~~~i~~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~~~~w~~l---l~~l~~~l~~~---~~~~~~~al~~l~- 156 (562)
+.+++ ...=...++..-.|+ ++.|++-...+++.++....+-.|--. +..+..++-+. ...+++..=.++.
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~ 1029 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNG 1029 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccccc
Confidence 43332 222122333333454 668998888888888877655556333 33333333332 1233333333333
Q ss_pred -----HHhhcchhcccccCCCCC-cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhc
Q 008533 157 -----KICEDIPQVLDSDVPGLA-ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS 230 (562)
Q Consensus 157 -----~i~~~~~~~~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 230 (562)
.+....++++.+.....- ...-...+-...-.+..+++.+..++++|+..+-.+.|. .-+++.++..+...+
T Consensus 1030 ~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1030 DDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLL 1107 (2067)
T ss_pred chhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHh
Confidence 555555555544321100 001111111112223445788999999999998777664 234556666666666
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC
Q 008533 231 NDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 231 ~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
....--.|++.+.++..++...
T Consensus 1108 ~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHHH
Confidence 5554556677777776666543
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.37 Score=51.48 Aligned_cols=195 Identities=16% Similarity=0.110 Sum_probs=131.9
Q ss_pred CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc
Q 008533 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR-TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 46 ~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~-~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~ 124 (562)
.|+-+++.+++|-+ .--|.=|.++|.+++- ..|. ++-..--.|-+-++++|+++...+|-.+..+.++|...|
T Consensus 470 PPeQLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWA-V~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWA-VDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred ChHhcchHHHHHHH-----HHHHHHHHHHHHHHhccchhh-hhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 46667777888775 5677779999999884 4565 222333456677889999999999999999999999887
Q ss_pred CcCchHHHHHH-----HHHHhcc-C--ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC-CHH
Q 008533 125 GIAGWLELLQA-----LVTCLDS-N--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP-HTS 195 (562)
Q Consensus 125 ~~~~w~~ll~~-----l~~~l~~-~--~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~ 195 (562)
+..--+|+.. .++.+.+ + ++.+|-.+..+|..|+..+.-.-..- .-..++..-+..++++ .+-
T Consensus 544 -~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ac-------l~~~li~iCle~lnd~~~pL 615 (1387)
T KOG1517|consen 544 -PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKAC-------LNGNLIGICLEHLNDDPEPL 615 (1387)
T ss_pred -chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHh-------ccccHHHHHHHHhcCCccHH
Confidence 3333344433 2222333 2 35788888899999999865432211 1234555667777774 577
Q ss_pred HHHHHHHHHHHHHhhchh-hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc
Q 008533 196 LRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 196 vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
+|.=.+-||+.+-+..+. .+...-...-+.++..+.|+-+++|.+++-+|+.++.+..+
T Consensus 616 LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccc
Confidence 888888888887764321 11111112345666677888899999999999999987543
No 190
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=96.22 E-value=0.38 Score=46.04 Aligned_cols=183 Identities=15% Similarity=0.219 Sum_probs=114.8
Q ss_pred cHhhhHHHHHHHHHhhhcc------chhhhhHHHHHHHHcCCCCCCchhHHHH-HHHHHHHhhcchhhhhhhHHHHHHH-
Q 008533 366 NLRKCSAAALDVLSNVFGD------EILPTLMPVIQAKLSASGDEAWKDREAA-VLALGAIAEGCIKGLYPHLSEIVAF- 437 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~r~aa-l~~l~~i~~~~~~~~~~~l~~~~~~- 437 (562)
++++.....+.......++ .++|.++..+..-.+... +..|+.- +.+++.++...++.+.+.++.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~---p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSV---PDAREPEVLSLMATIINKLGELIQPQVPQILEAV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS----GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCC---ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4555555666666555542 344555543333333344 6677664 4566677766665555555554444
Q ss_pred ---HhhhcCC---CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 438 ---LIPLLDD---KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 438 ---l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
.++.+.+ ..|..|..-...+..+...+.+.+- ....+.+..++..+.-++++++..|...++.++..+++.+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~-~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALL-QLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHH-HS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHH-cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4445542 4699999999999999887644210 12366788999999999999999999999999999998762
Q ss_pred --------ccccccHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHh
Q 008533 512 --------EELAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVG 552 (562)
Q Consensus 512 --------~~~~~~l~~il~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~ 552 (562)
..+..|+-.+++.++..+-+..++. .+.-...+..+...+.
T Consensus 198 ~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 198 KTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp H-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 2345577778888888887766543 3344455555554433
No 191
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=2 Score=44.56 Aligned_cols=303 Identities=15% Similarity=0.155 Sum_probs=160.5
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch------hhHHhchHHHHHHHhhhc-------------cCCC----HH
Q 008533 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLS-------------NDPS----AE 236 (562)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~-------------~~~~----~~ 236 (562)
.++|.+++.+.+...+.-...+..+..+...+. +....++..++..++... ++++ .+
T Consensus 335 ~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e 414 (980)
T KOG2021|consen 335 EIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEE 414 (980)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHH
Confidence 367777888877766666666666665554321 112223344443333211 1111 36
Q ss_pred HHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc-cc-ch-----hhHH-hhhhHHHH
Q 008533 237 VRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QL-PH-----ENLK-EFLPRLVP 308 (562)
Q Consensus 237 ~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~-~~-----~~~~-~~l~~l~~ 308 (562)
+|+..-..+..++...|+.+-..+.+.+...+..-+.........|+..+..+++. +. .. ...+ ..+..+.+
T Consensus 415 ~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ 494 (980)
T KOG2021|consen 415 VRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNEL 494 (980)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHH
Confidence 78887777788888888777666666555555544555566677888888888776 11 00 0000 12222333
Q ss_pred HHHhh-cccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--c
Q 008533 309 VLLSN-MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--E 385 (562)
Q Consensus 309 ~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~ 385 (562)
.++.. ....+ +-.+.-.=.+.+.+-...+.. .
T Consensus 495 ll~tsqv~~h~---------------------------------------------h~lVqLlfmE~ivRY~kff~~esq 529 (980)
T KOG2021|consen 495 LLMTSQVLAHD---------------------------------------------HELVQLLFMELIVRYNKFFSTESQ 529 (980)
T ss_pred HHHHcccccCC---------------------------------------------chHHHHHHHHHHHHHHHHHhcchh
Confidence 33211 00000 001211122223232222222 2
Q ss_pred hhhhhHHHHHH--HHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC-----------------
Q 008533 386 ILPTLMPVIQA--KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF----------------- 446 (562)
Q Consensus 386 ~~~~l~~~l~~--~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~----------------- 446 (562)
.+|.++..+.. .+-+.+ .++|.-|.+.+..+....++.+.++++.++..+.+.|+.+.
T Consensus 530 ~ip~vL~aFld~rglhn~n---e~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddql 606 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKN---ENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQL 606 (980)
T ss_pred hhHHHHHHHccchhccccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccc
Confidence 23333333321 222334 78888888888888887777777777777766655552100
Q ss_pred ---------------h-hHH-------------------------------------HHHHHHHHHhHHHHhhhcCCC--
Q 008533 447 ---------------P-LIR-------------------------------------SISCWTLSRFSKFIVQDIGHQ-- 471 (562)
Q Consensus 447 ---------------~-~vr-------------------------------------~~a~~~l~~l~~~~~~~~~~~-- 471 (562)
| .-+ ..++.++|.+++.+..-.-+.
T Consensus 607 yIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~q 686 (980)
T KOG2021|consen 607 YIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQ 686 (980)
T ss_pred eeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhc
Confidence 1 111 123334455554433210000
Q ss_pred -cchhhHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHh
Q 008533 472 -NGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 472 -~~~~~~~~il~~l~~~l~d--~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~ 530 (562)
.....+.+++..++..|.. ....+|.+.-.++++++...++.+.||+|.+++.+++-.+
T Consensus 687 vg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d 748 (980)
T KOG2021|consen 687 VGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTD 748 (980)
T ss_pred ccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCC
Confidence 0122244455555544433 2568899999999999999999999999999988766443
No 192
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.10 E-value=1.8 Score=43.52 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CCC-h-HHHHHHHHhhccCCCHHHHHHHHHHH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPD-F-NNYLAFILARAEGKSVEIRQAAGLLL 75 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~~-~-~~~l~~il~~~~~~~~~~R~~a~~~l 75 (562)
++.+...+++.... +|.+|...|..++. +++ + ...|..++.+ ++..++|.+|...+
T Consensus 134 ~ekl~~R~~DRE~~-VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vqn--DPS~EVRr~allni 194 (885)
T COG5218 134 LEKLSERLFDREKA-VRREAVKVLCYYQEMELNEENRIVNLLKDIVQN--DPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHhcchHH-HHHHHHHHHHHHHhccCChHHHHHHHHHHHHhc--CcHHHHHHHHHHHe
Confidence 55666777888888 99999999988874 443 3 3466777776 88899999886543
No 193
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=96.09 E-value=1.2 Score=47.41 Aligned_cols=111 Identities=23% Similarity=0.281 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC---ChhHHHHHHHHHHHhHHHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~ 464 (562)
+.+...+.......+ -..+..++.+||.+... .+++.+.+.+.+. ...+|.+|++++.++....
T Consensus 489 ~~l~~~l~~~~~~~~---~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 489 PYLEQELKEAVSRGD---EEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHhhccC---HHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 334444444444555 68889999999988642 2456666666554 6899999999999886654
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 465 VQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
+ ..+.+.+++.+.|. ++.||.+|...|.. .-++ ..+++.+...+...
T Consensus 556 ~------------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~------~~~l~~i~~~l~~E 604 (618)
T PF01347_consen 556 P------------EKVREILLPIFMNTTEDPEVRIAAYLILMR---CNPS------PSVLQRIAQSLWNE 604 (618)
T ss_dssp H------------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH---T---------HHHHHHHHHHHTT-
T ss_pred c------------HHHHHHHHHHhcCCCCChhHHHHHHHHHHh---cCCC------HHHHHHHHHHHhhC
Confidence 3 22333333433343 57899988766543 2111 34555556666543
No 194
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.07 E-value=0.11 Score=40.49 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHhhhcCC----CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHH
Q 008533 427 LYPHLSEIVAFLIPLLDD----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSA 502 (562)
Q Consensus 427 ~~~~l~~~~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~a 502 (562)
+.+++-.++..+-..+.| ....-|..++.+++.+.+..++ ....+.++++.-|...+.. +.++..|+.+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~-----~i~~~~pQI~a~L~sal~~--~~l~~~al~~ 77 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS-----HISSARPQIMACLQSALEI--PELREEALSC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHhCC--hhhHHHHHHH
Confidence 445555566666666665 4567889999999999995432 2455566666666666554 5899999999
Q ss_pred HHHHHHHc-cccccccHHHHHHHHHHHH
Q 008533 503 FATLEEEA-AEELAPRLEIILQHLMMAF 529 (562)
Q Consensus 503 l~~l~~~~-~~~~~~~l~~il~~L~~~l 529 (562)
...|+... .+.+.|+++.++-.++..+
T Consensus 78 W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 78 WNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998 4578888888887776654
No 195
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.01 E-value=0.041 Score=46.28 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHhhhcC------------------CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHh
Q 008533 427 LYPHLSEIVAFLIPLLD------------------DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI 488 (562)
Q Consensus 427 ~~~~l~~~~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l 488 (562)
+.++++.++|.+..... |+--.+|.+|..++-.+...+.. .-.+..+++.+...|
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~-------~~~~~~~~~~v~~GL 75 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS-------RIDISEFLDRVEAGL 75 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS-------SS-HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHhhc
Confidence 35678888888877554 22368999999999998886532 233677899999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh-------h-----hhHHHHHHHHHHHHHHHHh
Q 008533 489 LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY-------Q-----RRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 489 ~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~-------~-----~~~~~~~~~~l~~l~~~~~ 552 (562)
.| +..+|.-++..+.+++..++..+.+.++.+.+.+-..+... + ++..+.++.++..+...++
T Consensus 76 ~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 76 KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99 89999999999999998887777777888888877777542 1 2345578888877765554
No 196
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.01 E-value=0.07 Score=45.08 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=83.9
Q ss_pred CchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 127 ~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
...|+|++.|.+.++.+ ++..|..+++++|.+-.--+........ ... -..-.+.+.......+.
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~-----~~~------~~~~~~~~~~~~~~~l~--- 71 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK-----SLD------SKSSENSNDESTDISLP--- 71 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc-----cCC------ccccccccccchhhHHh---
Confidence 46799999999999875 6899999999999875544433221000 000 00000111111111110
Q ss_pred HHHhhchhhHHhchH-HHHHHHhhhccCCC-HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHh
Q 008533 206 QFIMLMPSALFVSMD-QYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEAC 283 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~ 283 (562)
.....| ...+..+ ..++.+...++|+. ..-+..++.++..+.+..+....+|+++++|.++..++..++..+..-+
T Consensus 72 -~~~~~~-~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~ 149 (160)
T PF11865_consen 72 -MMGISP-SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYF 149 (160)
T ss_pred -hccCCC-chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHH
Confidence 000100 1111111 23556666666544 3445567888888777766666899999999999988876666666666
Q ss_pred hhHHHhh
Q 008533 284 EFWHSYF 290 (562)
Q Consensus 284 ~~l~~~~ 290 (562)
.-++.+.
T Consensus 150 ~qL~~lv 156 (160)
T PF11865_consen 150 QQLADLV 156 (160)
T ss_pred HHHHHHH
Confidence 5555543
No 197
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.87 E-value=0.14 Score=39.63 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=67.9
Q ss_pred HHhchHHHHHHHhhhccCCC----HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhh
Q 008533 215 LFVSMDQYLQGLFLLSNDPS----AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYF 290 (562)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~ 290 (562)
+.+++-.++..+-..+.+.+ ..-|+.++..+..+++..+..+....++++-.+...+. .++.+..|+++|..+.
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence 34455455555544444332 35588899999999998888888888888877766665 4569999999999988
Q ss_pred ccccchhhHHhhhhHHHHHHHhh
Q 008533 291 EAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 291 ~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
.. -..+.+.+.++.++..++++
T Consensus 83 ~~-L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 83 KT-LKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHh
Confidence 76 12355777777777777654
No 198
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.87 E-value=0.41 Score=47.76 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHH
Q 008533 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRL 185 (562)
Q Consensus 106 ~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l 185 (562)
...-|+..+..........+...+..++..+..+=++++...| .+..+..++.. .+..+..| ...+..++-.+
T Consensus 24 ~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dR--il~fl~~f~~Y---~~~~dpeg--~~~V~~~~~h~ 96 (885)
T COG5218 24 SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDR--ILSFLKRFFEY---DMPDDPEG--EELVAGTFYHL 96 (885)
T ss_pred hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHH--HHHHHHHHHHh---cCCCChhh--hHHHHHHHHHH
Confidence 4455655554443333222222234455555555444432222 33444444441 11111111 24567777788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 186 LQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 186 ~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
+.+..+++-.||..+++.+.-+.....+.-......++..+.+.+-|.++.+|..++.+|+.+-+..
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999888776543223334556677777777888999999999999887543
No 199
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=4.4 Score=45.86 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhhh-ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCCh
Q 008533 370 CSAAALDVLSNVF-GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFP 447 (562)
Q Consensus 370 ~a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~ 447 (562)
.+.-+.+.++... |....+.++..+.+...++ .+|++|.+.+..+....-... -......+.+--.+...+.|...
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~--~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADS--STWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence 3444555555544 3366677777776644333 349999999888776553221 12234556677788888999988
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-CHHH-HHHHHHHHHHHHHHccccccccHHHHHHHH
Q 008533 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRV-QEAACSAFATLEEEAAEELAPRLEIILQHL 525 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~v-r~~a~~al~~l~~~~~~~~~~~l~~il~~L 525 (562)
.||..|+.+++.+...-.- ....+............ ...+ .-.|.-.++.++-..+..+-.+++..+..|
T Consensus 1584 ~vre~Aa~~Lsgl~~~s~~--------~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~L 1655 (1710)
T KOG1851|consen 1584 EVREEAAKCLSGLLQGSKF--------QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNL 1655 (1710)
T ss_pred HHHHHHHHHHHHHHhcccc--------ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHH
Confidence 8999999999988764221 11111222222222221 1233 446778888888888777777888887777
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHhhh
Q 008533 526 MMAFGKYQRRNLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 526 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~ 554 (562)
.....++ ......+-++++..-..-.++
T Consensus 1656 s~fa~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1656 SSFARES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred HhhcCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 7766654 233335666666655554443
No 200
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=95.82 E-value=0.18 Score=39.04 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=68.7
Q ss_pred hhhhhHHHHHHHHhhhcCCCC----hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHH
Q 008533 426 GLYPHLSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACS 501 (562)
Q Consensus 426 ~~~~~l~~~~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~ 501 (562)
.+.+++-.++..+-..+.|.+ ..-|..++.+++.+.+..+.. ...+.++++.-|..+|. .+.+|..|+.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~-----i~~a~pQI~acL~saL~--~~eL~~~al~ 76 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKH-----ISSALPQIMACLQSALE--IPELRSLALR 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 345556667777777777755 245889999999999976532 46667777777777776 4679999999
Q ss_pred HHHHHHHHcc-ccccccHHHHHHHHHHH
Q 008533 502 AFATLEEEAA-EELAPRLEIILQHLMMA 528 (562)
Q Consensus 502 al~~l~~~~~-~~~~~~l~~il~~L~~~ 528 (562)
+...++.... +.+.|.++.++-.+...
T Consensus 77 ~W~~~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 77 CWHVLIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9999999884 45666666665555443
No 201
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.72 Score=43.45 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHhhhcc--chh--hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhc
Q 008533 368 RKCSAAALDVLSNVFGD--EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~--~~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l 442 (562)
+..|.+-|..++..+.. .+. ..+.+.+. ++++.+ ...|..|...+|.++...+......++ ..++.++..+
T Consensus 100 ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~---~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 100 KEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSD---AELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 44466666666666533 222 23444454 888888 999999999999999987654333332 2456666666
Q ss_pred C-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH-HHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHc
Q 008533 443 D-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILD--TNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 443 ~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d--~~~~vr~~a~~al~~l~~~~ 510 (562)
. +++-.+|..|+.+++.+....+.. ...++. .=+..|...+++ .+.+.+..+...++.++..-
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g-----~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPG-----QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHH-----HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 5 566778899999999999876532 122211 115555666666 56788889999999988654
No 202
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.78 E-value=2.9 Score=43.32 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc-CCC
Q 008533 368 RKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL-DDK 445 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l-~d~ 445 (562)
.-...+-.+.|.+..+. ++...++|.+...+++.+ .+..+.++..+..+++...- ...-..++|.+.... ...
T Consensus 367 ~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~---~~iQ~~~L~~lptv~e~iD~--~~vk~~ilP~l~~l~~~tt 441 (700)
T KOG2137|consen 367 LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD---VQIQELALQILPTVAESIDV--PFVKQAILPRLKNLAFKTT 441 (700)
T ss_pred hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc---hhhHHHHHHhhhHHHHhccH--HHHHHHHHHHhhcchhccc
Confidence 33445556667777755 788899999999999988 89999999999999887652 122234677766653 467
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
+..|+.+++-+++.++..+. .-.+-+.+..++++.+-.++.+.-.......++.
T Consensus 442 ~~~vkvn~L~c~~~l~q~lD--------~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 442 NLYVKVNVLPCLAGLIQRLD--------KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred chHHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 89999999999999997763 2233444555566666556666554444444443
No 203
>PF05536 Neurochondrin: Neurochondrin
Probab=95.74 E-value=3 Score=43.20 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=122.9
Q ss_pred CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH----HHHhh-hhhC-------CchHHHHHHH
Q 008533 47 PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK----SELLP-CLGA-------ADRHIRSTVG 114 (562)
Q Consensus 47 ~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~----~~ll~-~l~~-------~~~~vr~~~~ 114 (562)
+..+.-|..+|.+ .++.-|..+..++++.+... ......+..|. ..++. +|.. +...-+..+.
T Consensus 4 ~~~l~~c~~lL~~---~~D~~rfagL~lvtk~~~~~--~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 4 SASLEKCLSLLKS---ADDTERFAGLLLVTKLLDAD--DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred hHHHHHHHHHhcc---CCcHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 3445567777774 44777777777677666431 11111111111 12222 2322 1233344455
Q ss_pred HHHHHHHHhcC---cCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc
Q 008533 115 TIVSVVVQLGG---IAGWLELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (562)
Q Consensus 115 ~~i~~i~~~~~---~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (562)
.+++.++.-.. ....-+-+|.|.+.+.+.+. ....-++.||..++..-..... + .-...++.+.+.+.
T Consensus 79 svL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~a-----L---l~~g~v~~L~ei~~ 150 (543)
T PF05536_consen 79 SVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKA-----L---LESGAVPALCEIIP 150 (543)
T ss_pred HHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHH-----H---HhcCCHHHHHHHHH
Confidence 55555555221 13445568999999987665 8888899999999844332110 0 11234556666665
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhH-H---hchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccc------hhhhH
Q 008533 191 SPHTSLRKLSLGSVNQFIMLMPSAL-F---VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF------LEPHL 260 (562)
Q Consensus 191 ~~~~~vr~~al~~l~~~~~~~~~~~-~---~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~------~~~~l 260 (562)
+ .+.....|++.+..++....... . ..+..+++.+...........+-.++..|..+....+.. -....
T Consensus 151 ~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 151 N-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred h-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 5 55678888888888776544211 1 123344455544444444456677788888776665311 11233
Q ss_pred HHHHHHHHhhcCC-CChhHHHHHhhhHHHhhc
Q 008533 261 RNLFEYMLQVNKD-TDDDVALEACEFWHSYFE 291 (562)
Q Consensus 261 ~~i~~~~~~~~~~-~~~~v~~~a~~~l~~~~~ 291 (562)
..+...+...+++ ..+.-|..++.....+.+
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4555555544443 334556666665555444
No 204
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.73 E-value=1.7 Score=44.88 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH--hhcCCCh--HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQ--YSQFPDF--NNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~--~~~~~~~--~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~ 89 (562)
..++.+.|...++.|.. +|. +...+.. +.+++.. +.+|=.+.. .+ +-++ ...+|. +.+.|+.++..
T Consensus 238 p~el~~~l~k~l~~~~~-~rp-~~~~l~~~~ff~D~~~~aLrfLD~l~~----kd-n~qK--s~Flk~-Ls~~ip~fp~r 307 (700)
T KOG2137|consen 238 PSELRESLKKLLNGDSA-VRP-TLDLLLSIPFFSDPGLKALRFLDDLPQ----KD-NSQK--SSFLKG-LSKLIPTFPAR 307 (700)
T ss_pred cHHHHHHHHHHhcCCcc-cCc-chhhhhcccccCCchhhhhhhcccccc----cC-cHHH--HHHHHH-HHHhhccCCHH
Confidence 36788889999999999 998 4444444 2234432 222222222 12 2222 233444 67778887764
Q ss_pred hH-HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC-cCchHHHHHHHHHHhccCC-hhHHhHHHHHHHHHhhcchhcc
Q 008533 90 NQ-QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 90 ~~-~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~-~~~w~~ll~~l~~~l~~~~-~~~~~~al~~l~~i~~~~~~~~ 166 (562)
.. ..|+..+...|.+. ...-..--++-.|+.... ...-+.++|.|...++.++ .+.....++=+..|.+..+.
T Consensus 308 v~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~-- 383 (700)
T KOG2137|consen 308 VLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP-- 383 (700)
T ss_pred HHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh--
Confidence 43 45555555555332 111111122223343322 2344677788877777433 23333333333334444333
Q ss_pred cccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhh-ccCCCHHHHHHHHHHH
Q 008533 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLL-SNDPSAEVRKLVCAAF 245 (562)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~L 245 (562)
+...+.++|.|...+++.+..++..+++.+..+.+.++-.+.. ..+++.+..+ ....+..++..++.|+
T Consensus 384 --------e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vkvn~L~c~ 453 (700)
T KOG2137|consen 384 --------EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVKVNVLPCL 453 (700)
T ss_pred --------HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHHHHHHHHH
Confidence 2356889999999999999999999999999998877522111 2345555443 3455678999999999
Q ss_pred HHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 246 ~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
..+++..... ..++. +..++++.+..++.+....+.....+
T Consensus 454 ~~l~q~lD~~--~v~d~-~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 454 AGLIQRLDKA--AVLDE-LLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred HHHHHHHHHH--HhHHH-HHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 9988554332 22333 33345556666766655555444433
No 205
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.73 E-value=5.8 Score=47.87 Aligned_cols=176 Identities=16% Similarity=0.167 Sum_probs=113.3
Q ss_pred cHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCC-CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC
Q 008533 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG-DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d 444 (562)
.++.++...++.++..-+..+++.+.-...+..+.-+ +..-+.......-+..+..+....+.++++.++..+.+.+.+
T Consensus 580 ~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~ 659 (2341)
T KOG0891|consen 580 AIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQD 659 (2341)
T ss_pred hhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhc
Confidence 3455566666666654443444444333333332110 000222222233333333444445678888888889999999
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHcccccccc--HHHH
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NKRVQEAACSAFATLEEEAAEELAPR--LEII 521 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~~vr~~a~~al~~l~~~~~~~~~~~--l~~i 521 (562)
+.+.+-.++..+++.++...+.. ...+....++.+.+.+.+. +..-|.++.++++.++...+-.+.|| .|.+
T Consensus 660 ~~s~~~~~~~~~~~eL~~v~g~~-----~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~l 734 (2341)
T KOG0891|consen 660 PSSGVEKAVLETIGELCAVGGEE-----MVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPEL 734 (2341)
T ss_pred cchhhHHHHHHHHHHHHHhccch-----hhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHH
Confidence 99999999999999999876532 3445567777777777664 46668889999999998877777776 5788
Q ss_pred HHHHHHHHhhhhhhHHH-HHHHHHHH
Q 008533 522 LQHLMMAFGKYQRRNLR-IVYDAIGT 546 (562)
Q Consensus 522 l~~L~~~l~~~~~~~~~-~~~~~l~~ 546 (562)
+..|...+........+ .+...+|.
T Consensus 735 l~~l~~~~~te~~~~ir~~~v~~~g~ 760 (2341)
T KOG0891|consen 735 LDILINILKTEQSSTIRREAIRLLGL 760 (2341)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence 88888887766544444 67777763
No 206
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=1.7 Score=49.03 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=85.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH-HhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 008533 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (562)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 259 (562)
-+..+++-+..-++..|..|++.+..++....... ...++.+...+.++..+.+..+|.+....+..+.....+.+.||
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34456777777899999999999999987543222 22245556666677788899999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 260 l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
++.+++..+-..-|.+..+...|...+...
T Consensus 122 LK~li~~wl~~~~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 122 LKSLIPPWLGGQFDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred HHhhhhhhhheecccchHHHHHHHHHHHhh
Confidence 999999998887787777777776655544
No 207
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.39 Score=45.86 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=108.1
Q ss_pred HHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcch
Q 008533 395 QAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGR 474 (562)
Q Consensus 395 ~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 474 (562)
...+.+-+ ..+|..|+..+-.+....+..+..++..+++.+.+...|.+..||.....++-.+....... ...
T Consensus 64 l~qlkHhN---akvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e----~~s 136 (393)
T KOG2149|consen 64 LSQLKHHN---AKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE----DQS 136 (393)
T ss_pred HhhhcCch---HhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh----hhc
Confidence 33445555 89999999999988887766777788889999999999999999999999888866554321 257
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhh
Q 008533 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ 533 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~ 533 (562)
+++.-+++-+...+.+-.+.+|.-+...+..+++.+++.+..+...++..+...+....
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~~ 195 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKLQ 195 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888888888899999999999999999988888877778888887777653
No 208
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.58 E-value=0.36 Score=46.69 Aligned_cols=150 Identities=17% Similarity=0.279 Sum_probs=91.2
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh----cC---CCChhHHHHHhhhHHHhhccccch
Q 008533 224 QGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV----NK---DTDDDVALEACEFWHSYFEAQLPH 296 (562)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~----~~---~~~~~v~~~a~~~l~~~~~~~~~~ 296 (562)
..+.+.+.+.++..|..++..|.. .+.+.+++|++... .. +.+-..-...+.+..++..++..
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t---------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l- 250 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT---------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL- 250 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc---------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-
Confidence 333333334567777777766632 12233333333322 11 11344455666777777776432
Q ss_pred hhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHH
Q 008533 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (562)
Q Consensus 297 ~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~ 376 (562)
.+.+|+..++|.++.++....-. ... +...+|.+|..|...+.
T Consensus 251 -~le~Ylh~Lip~vltclv~~~l~------------------------------~~~------~~~~h~~LRd~AA~ll~ 293 (343)
T cd08050 251 -HLEPYLHQLIPSVLTCLVAKQLC------------------------------SRP------PDDNHWALRDYAARLLA 293 (343)
T ss_pred -chHHhHHHHHHHHHHHhhhHhhc------------------------------CCC------CCchHHHHHHHHHHHHH
Confidence 46788889999988877532110 000 01237999999999999
Q ss_pred HHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhh
Q 008533 377 VLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (562)
Q Consensus 377 ~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~ 421 (562)
.++..++. .+.+.++..+.+.+.+++ ......++|+.+|+.+..
T Consensus 294 ~i~~~f~~~y~~l~~ri~~tl~k~l~d~~-~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 294 QICRKFSTSYNTLQPRITRTLLKALLDPK-KPLTTHYGAIVGLSALGP 340 (343)
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHcCCC-CCcchhhHHHHHHHHhCc
Confidence 99999976 455677767766666543 225569999999988753
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.56 E-value=0.098 Score=39.26 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 480 il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
.+...+..++|+.+.||..+...|.++++.-. ......+.++..++..+.+.++.+..+++.+++.++...++..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 45566777889999999999999999998755 3344578999999999999999999999999999999888754
No 210
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.31 Score=48.40 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=84.7
Q ss_pred HHHhh-hhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhcchhcccccCCCC
Q 008533 96 SELLP-CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (562)
Q Consensus 96 ~~ll~-~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~ 173 (562)
..++. ...+.+..||+++.-+++-++-.+ +++++...+.++. -++.+|-+...+|+..|..-+.
T Consensus 554 ~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--------- 619 (926)
T COG5116 554 STLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD--------- 619 (926)
T ss_pred hhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc---------
Confidence 34444 577889999999988888777655 4566666666664 4788999999999988887654
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccC
Q 008533 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND 232 (562)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (562)
+..+..+-.++.|++.-||..|+-+.+.+..-..+.+.++...+.+.+.+...+
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhh
Confidence 234445666778888899999998888776655556666666666666555544
No 211
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.49 E-value=2.5 Score=40.53 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhh----hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~----~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
..++......++.+...-+..|..-...+.++.+.+.+.+. ..+..++..+.-.+++++..|...++.++..+.+.
T Consensus 116 ~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 116 EAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 34444444555554334478999999999999988765442 45677888899999999999999999999999987
Q ss_pred Hhhh---cCCCcchhhHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Q 008533 464 IVQD---IGHQNGREQFEKVLMGLLKRILDTN-KRVQEAACSAFATLEE 508 (562)
Q Consensus 464 ~~~~---~~~~~~~~~~~~il~~l~~~l~d~~-~~vr~~a~~al~~l~~ 508 (562)
+... ......+.|+-.++..++..+.|+. ...-..-+..|..++.
T Consensus 196 ~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 196 VSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 7651 1112346677788888888888863 3333334466666654
No 212
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.42 E-value=0.16 Score=52.07 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=111.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhh---cCCChHHHHHHHHh--h--c----cCCCHHHHHHHHHHHHHHHHHhh
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS---QFPDFNNYLAFILA--R--A----EGKSVEIRQAAGLLLKNNLRTAY 83 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~---~~~~~~~~l~~il~--~--~----~~~~~~~R~~a~~~lk~~i~~~w 83 (562)
+.+..++-+..+++.+ +-..|+..|+++. .++.++..|..+.. . . ...++.+|.-...+|.+...-.
T Consensus 237 ~~~~~~liAsad~~~~-V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa- 314 (501)
T PF13001_consen 237 ERFPPLLIASADSNSS-VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA- 314 (501)
T ss_pred hHHhheeeEEeCCcch-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-
Confidence 3455566666777788 9999999999976 36778888888776 2 0 1234555544444444432211
Q ss_pred ccCChhhHHHHHHHHhhhhhCC--chHHHHHHHHHH---HHHHHhcCcCch----HHHHHHHHHHhc--------cCChh
Q 008533 84 KSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIV---SVVVQLGGIAGW----LELLQALVTCLD--------SNDIN 146 (562)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~~~~i---~~i~~~~~~~~w----~~ll~~l~~~l~--------~~~~~ 146 (562)
.....+.+.+...+..+ +.++|..+.+.+ ..+.....+... +.++..+...++ +.+..
T Consensus 315 -----~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~ 389 (501)
T PF13001_consen 315 -----TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIE 389 (501)
T ss_pred -----hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHH
Confidence 01112233344445443 556666665666 555444322222 222222222331 23567
Q ss_pred HHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 008533 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (562)
Q Consensus 147 ~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (562)
.|..+.++||.++...+..+..+ -.++..++..+.++.+++|.+.-+|+.++....
T Consensus 390 lR~~aYe~lG~L~~~~p~l~~~d---------~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 390 LRSLAYETLGLLAKRAPSLFSKD---------LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred HHHHHHHHHHHHHccCccccccc---------HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 89999999999999998876433 346777888888889999999999999887654
No 213
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.35 E-value=0.58 Score=42.58 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred hhhhHHHHHHHHcCC---CCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC------C----CChhHHHHH
Q 008533 387 LPTLMPVIQAKLSAS---GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD------D----KFPLIRSIS 453 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~---~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~------d----~~~~vr~~a 453 (562)
+.+++|++.+.++++ +-.+-..-...++...++...-.-.+.||+.+++|.++.++- + .+-.+|.-|
T Consensus 228 lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~A 307 (450)
T COG5095 228 LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVA 307 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 445555555555432 111133334444555555555544568999999998877652 1 234699999
Q ss_pred HHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHh
Q 008533 454 CWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 454 ~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~ 530 (562)
+..++..+..++.. ....-+++...+++.+-|.+ ...+-.|...++.+-+.. +..+.|.++--...+.+.+.
T Consensus 308 A~ll~yV~~~F~~~-----YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 308 ADLLKYVFSNFSSS-----YKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred HHHHHHHHhhhhHh-----hhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 99999999887643 34445778888888776642 334556677777666554 44455544433333333444
Q ss_pred h
Q 008533 531 K 531 (562)
Q Consensus 531 ~ 531 (562)
+
T Consensus 383 ~ 383 (450)
T COG5095 383 K 383 (450)
T ss_pred c
Confidence 3
No 214
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.34 E-value=1.1 Score=42.94 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=104.7
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc------CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHH
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS------MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVV 121 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~------l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~ 121 (562)
.+...+..+|... +.++++.+....++-..+...-.. .........-..+++.+..++..++..++.+++.++
T Consensus 55 ~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 55 QYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555666667652 378888888888888877543111 000001113346667777889999999999999999
Q ss_pred HhcCcCchH---HHHHHHHHHhcc----CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhh-----
Q 008533 122 QLGGIAGWL---ELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----- 189 (562)
Q Consensus 122 ~~~~~~~w~---~ll~~l~~~l~~----~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----- 189 (562)
...+...-. +.++.+.+++++ ++...+..++.+|..++..-..... + .-...++.+...+
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~------f--~~~~~v~~l~~iL~~~~~ 205 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQV------F--WKSNGVSPLFDILRKQAT 205 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHH------H--HTHHHHHHHHHHHH----
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHH------H--HhcCcHHHHHHHHHhhcc
Confidence 887543333 677777777765 3445668899999999865443210 0 1144566666666
Q ss_pred cCC--CHHHHHHHHHHHHHHHhhchh---hHHhchHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhCcc
Q 008533 190 QSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 190 ~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
.+. +..+.-.++-|+..+.- .++ .+... .+++.+...++ ...+++-+-++.+|..+++..++
T Consensus 206 ~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~--~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 206 NSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKK--YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp -----HHHHHHHHHHHHHHHTT-SHHHHHHHHTT--SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred cCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhcc--chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 222 34556666666655432 221 12111 14555555443 23467777778888888777665
No 215
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.31 E-value=0.91 Score=45.19 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=95.5
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHcCCCCCC-----chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-----
Q 008533 374 ALDVLSNVFGDEILPTLMPVIQAKLSASGDEA-----WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD----- 443 (562)
Q Consensus 374 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~----- 443 (562)
+|..|...-| +..++|++...+...-+.+ -+.-.-.+....++..+..=.+.+|+.+++|.++.++-
T Consensus 227 AL~sL~TDsG---L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~ 303 (576)
T KOG2549|consen 227 ALQSLETDSG---LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLC 303 (576)
T ss_pred HHHhhccCcc---HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhcc
Confidence 4544444333 5567777777666432111 22223333344445555445678999999999888662
Q ss_pred -----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHc-ccccc
Q 008533 444 -----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELA 515 (562)
Q Consensus 444 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~vr~~a~~al~~l~~~~-~~~~~ 515 (562)
|.|+.+|.-|+..++.++..+... ....-..++..+.+.+.|+. ....--|...|..|-... +..+.
T Consensus 304 ~~p~~dnhwaLRDfAA~ll~~i~k~f~~~-----y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~il 378 (576)
T KOG2549|consen 304 LRPELDNHWALRDFAARLLAQICKNFSTL-----YNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVIL 378 (576)
T ss_pred CCccccchHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheec
Confidence 567889999999999999988653 33456788888999988863 333444555555554433 55666
Q ss_pred ccHHHHHHHHHHHHhhh
Q 008533 516 PRLEIILQHLMMAFGKY 532 (562)
Q Consensus 516 ~~l~~il~~L~~~l~~~ 532 (562)
|.+......+...+...
T Consensus 379 p~L~~~~~~l~~~l~~~ 395 (576)
T KOG2549|consen 379 PNLKEYNERLQSVLDVE 395 (576)
T ss_pred cchHHHHHHhhhhcccc
Confidence 77777777766666553
No 216
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.27 E-value=3 Score=40.22 Aligned_cols=197 Identities=14% Similarity=0.087 Sum_probs=108.7
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc--CChhhHHHH----HHHHhhhhhCCchHHHHHHHHHHHHHH
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS--MSPSNQQYI----KSELLPCLGAADRHIRSTVGTIVSVVV 121 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~--l~~~~~~~i----~~~ll~~l~~~~~~vr~~~~~~i~~i~ 121 (562)
.+...++.++.. ...++.-+....++-..+...-.. +-.+..... -...++.|...+..+-++.+.+++.++
T Consensus 65 ~~v~~fi~LlS~--~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 65 QYVKTFINLLSH--IDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHhch--hhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 455556666654 334444445666555555432111 111111112 234667778889999999999999999
Q ss_pred HhcC----cCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHH
Q 008533 122 QLGG----IAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (562)
Q Consensus 122 ~~~~----~~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 196 (562)
.... .....-.+..|...+++ .++..+..+..||..++..-.....- .. ..-+.-+++.+. -+..+..+
T Consensus 143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~--v~--adg~~~l~~~l~--s~~~~~Ql 216 (442)
T KOG2759|consen 143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAF--VI--ADGVSLLIRILA--STKCGFQL 216 (442)
T ss_pred HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhee--ee--cCcchhhHHHHh--ccCcchhH
Confidence 8752 23555567778877876 56778888999998888765443210 00 011222333332 22235567
Q ss_pred HHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhCcc
Q 008533 197 RKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 197 r~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
+-..+-|+..+.-. | .+...+. .+++.+...+++ ..+.+-+-++.++..++...++
T Consensus 217 QYqsifciWlLtFn-~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 217 QYQSIFCIWLLTFN-P-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred HHHHHHHHHHhhcC-H-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 77777777655432 2 1112111 234444444432 2355666667777777776643
No 217
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.17 E-value=0.1 Score=43.95 Aligned_cols=114 Identities=19% Similarity=0.193 Sum_probs=76.8
Q ss_pred hHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHH
Q 008533 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (562)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~ 377 (562)
.+.++++.++|.++......++-+... .+.|+-+.. | ++..+|.+|.+++..
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V-------------~mGPFKh~v-----D----------DGLelRK~ayE~lyt 53 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREV-------------DMGPFKHKV-----D----------DGLELRKAAYECLYT 53 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEE-------------EETTCEEEE-----E----------GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccCHHHheee-------------ecCCceeee-----c----------CcHHHHHHHHHHHHH
Confidence 356777888888876554333222111 233443332 1 134699999999999
Q ss_pred HHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 008533 378 LSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (562)
Q Consensus 378 l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~ 443 (562)
+-..+.. --+..+++.+...+.+ + ...|.-+...+..++...+..+...++.+++.+...|+
T Consensus 54 lLd~~~~~~~~~~~~~~v~~GL~D-~---~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 54 LLDTCLSRIDISEFLDRVEAGLKD-E---HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHSTCSSS-HHHHHHHHHHTTSS-----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHhhcCC-c---HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 9887755 2345678888888988 6 89999999999999998887777777777776666663
No 218
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.15 E-value=1.4 Score=39.63 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=56.4
Q ss_pred HhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 98 LLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 98 ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~--~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
|.+.+..++...|+.++.++|.+-. |.-+|.|.+.+.+ +.|-+|+-+..+|+.|..
T Consensus 192 l~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------------- 249 (289)
T KOG0567|consen 192 LIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------------- 249 (289)
T ss_pred HHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---------------
Confidence 3344445566677777777766654 3445666666654 357888888888887654
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
+..++.|.+.+.|+..-|++.+.-+|..+
T Consensus 250 ---e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 250 ---EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred ---HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 44566777888888888887776666543
No 219
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.03 E-value=1.4 Score=42.24 Aligned_cols=187 Identities=14% Similarity=0.227 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH---HHHhhhhhC--CchHHHHHHHHHHHHHHHhcCcC---chHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK---SELLPCLGA--ADRHIRSTVGTIVSVVVQLGGIA---GWLELL 133 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~---~~ll~~l~~--~~~~vr~~~~~~i~~i~~~~~~~---~w~~ll 133 (562)
.-+.+.|.-++.++.+.+...-..=......++- +.++..|.. +++.+--..+..+..+++.+.-. -.++.+
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~~~~f 166 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILYSECF 166 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHTSGGG
T ss_pred hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhCcHHH
Confidence 5677888888888877776543321101222221 223333321 23334444555555554432100 001122
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch-
Q 008533 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP- 212 (562)
Q Consensus 134 ~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~- 212 (562)
-.+.+.++.++-.+-..|+.++..+.......... .+......++..+-+++.+++.-+|..+++.++.++..-+
T Consensus 167 ~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~----fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 167 WKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE----FLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 23667777777778778888888887765543211 1123456677778889999999999999999999986422
Q ss_pred -hhHHhch--HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 213 -SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 213 -~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
..+..++ +.-+..+..++++....++-.++.++--++.+.
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 1112221 233566677788888899999999888877664
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=95.02 E-value=1.5 Score=46.74 Aligned_cols=161 Identities=15% Similarity=0.079 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCcCchHHHHHHHHHHhcc----CChhHHhHHHHHHHHHhhcchhcc------cccCCCCCcchhHhhH
Q 008533 113 VGTIVSVVVQLGGIAGWLELLQALVTCLDS----NDINHMEGAMDALSKICEDIPQVL------DSDVPGLAECPINIFL 182 (562)
Q Consensus 113 ~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~----~~~~~~~~al~~l~~i~~~~~~~~------~~~~~~~~~~~~~~il 182 (562)
++..+..+.... ...-.+++..+..++.+ .++..+.+++.+++.+....-..- ........+.++..+.
T Consensus 414 a~~~l~~l~~~~-~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (618)
T PF01347_consen 414 AAQLLASLPFHV-RRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLE 492 (618)
T ss_dssp HHHHHHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHH
T ss_pred HHHHHHHHHhhc-CCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHH
Confidence 344444444332 12335666666666654 356788899999988887654431 1111111233444444
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHhhCccchhhh
Q 008533 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN---DPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (562)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 259 (562)
..+-......+.+.+..++++|+++... ..++.+...+. .....+|..|+.+|..++...++.+.+.
T Consensus 493 ~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~ 562 (618)
T PF01347_consen 493 QELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI 562 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH
T ss_pred HHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 4444445566778899999999987641 11333333333 3357899999999988876666554443
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 260 l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
+-.++ . ....+.++|..|+..+...
T Consensus 563 l~~I~---~--n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 563 LLPIF---M--NTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHH---H---TTS-HHHHHHHHHHHHHT
T ss_pred HHHHh---c--CCCCChhHHHHHHHHHHhc
Confidence 33322 2 2445677999998655543
No 221
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.99 E-value=3.6 Score=40.29 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=131.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHH---------HHhhccCCCHHHHHHHHHHHHHHHHHh--hccCChhhH
Q 008533 23 QQISPSSTADKSQIWQQLQQYSQFPDFNNYLAF---------ILARAEGKSVEIRQAAGLLLKNNLRTA--YKSMSPSNQ 91 (562)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~---------il~~~~~~~~~~R~~a~~~lk~~i~~~--w~~l~~~~~ 91 (562)
..++++.+ +|..|...+.-+-.++.++..+.. -|.. .......|..|..+.|..+... -..++
T Consensus 33 ~lL~~~~~-vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~~~~~~---- 106 (371)
T PF14664_consen 33 MLLSDSKE-VRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKGPKEIP---- 106 (371)
T ss_pred HHCCCcHH-HHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCCcccCC----
Confidence 46777788 999999999887776665543332 1222 2557889999999999887652 22233
Q ss_pred HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc--ccc
Q 008533 92 QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV--LDS 168 (562)
Q Consensus 92 ~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~--~~~ 168 (562)
..+...+.....+++...|+.+-..+..++-.+|. -.+-+-+..+.+.+.++........+.++-.+....... +.+
T Consensus 107 ~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 23444555555668889999999999999987643 112223445555555544445556666676666654432 121
Q ss_pred cCCCCCcchhHhhHHHHHHhh---cCCCH--HHHHHHHHHHHHHHhhchhhHH---hchHHHHHHHhhhccCCCHHHHHH
Q 008533 169 DVPGLAECPINIFLPRLLQFF---QSPHT--SLRKLSLGSVNQFIMLMPSALF---VSMDQYLQGLFLLSNDPSAEVRKL 240 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l---~~~~~--~vr~~al~~l~~~~~~~~~~~~---~~~~~~l~~l~~~~~~~~~~~~~~ 240 (562)
+..++.++.++...- ...+. +.-..+.+++..+....+..+. +.+ .-++.+...+..+++++|..
T Consensus 187 ------~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 187 ------GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred ------CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHH
Confidence 123455555555541 11222 2334555566666654443221 122 23556666667778889999
Q ss_pred HHHHHHHHHhhCc
Q 008533 241 VCAAFNLLIEVRP 253 (562)
Q Consensus 241 ~~~~L~~l~~~~~ 253 (562)
+++.|..+....+
T Consensus 260 Ildll~dllrik~ 272 (371)
T PF14664_consen 260 ILDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHHHCCCC
Confidence 9999988876543
No 222
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.96 E-value=0.2 Score=44.76 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC--CChhHHHHHHHHHHHhHHHHhhhc
Q 008533 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD--KFPLIRSISCWTLSRFSKFIVQDI 468 (562)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~ 468 (562)
+..+.+.+..+. ...|+.+.+.||++-... -+|.+.+.|.| .+|.||.-|+.+||.++.
T Consensus 189 I~al~~~l~~~S---alfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 189 INALIDGLADDS---ALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHhcccch---HHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------
Confidence 344445555554 888999999999887643 36666666665 689999999999998875
Q ss_pred CCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 469 GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 469 ~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+..++.|.+.++|+.+.|+..+..+|...-.
T Consensus 250 ---------e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 ---------EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ---------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 2456677778889989999988888875543
No 223
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.83 E-value=5 Score=40.38 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhcCcCchHHHHH-HHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHH
Q 008533 108 HIRSTVGTIVSVVVQLGGIAGWLELLQ-ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLL 186 (562)
Q Consensus 108 ~vr~~~~~~i~~i~~~~~~~~w~~ll~-~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~ 186 (562)
.-|-.++.++|.++..-+...+..++. .|..++++.+...|..+..++...+......... .....+.+.+.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~-------~~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPS-------PPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCC-------ccHHHHHHHHH
Confidence 345678999999999877778888887 5999999999899999999999998877653221 01245666677
Q ss_pred HhhcC
Q 008533 187 QFFQS 191 (562)
Q Consensus 187 ~~l~~ 191 (562)
..|++
T Consensus 175 ~~L~~ 179 (441)
T PF12054_consen 175 EILEN 179 (441)
T ss_pred HHHcC
Confidence 77763
No 224
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.76 E-value=4.8 Score=42.49 Aligned_cols=146 Identities=17% Similarity=0.092 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHhccC----ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhh----cCCCHHHHHH
Q 008533 128 GWLELLQALVTCLDSN----DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF----QSPHTSLRKL 199 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~~----~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l----~~~~~~vr~~ 199 (562)
.-++++..+..++.++ .+..+.+++.+++.+....-..-... + ...+..+++.+.+.+ +..+.+.+..
T Consensus 390 Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 465 (574)
T smart00638 390 PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-P---DFVLEELLKYLHELLQQAVSKGDEEEIQL 465 (574)
T ss_pred CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-C---hhhHHHHHHHHHHHHHHHHhcCCchheee
Confidence 3467777777777754 45778889999988887543221100 0 012345555555544 3456667888
Q ss_pred HHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHH
Q 008533 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (562)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~ 279 (562)
++++|+++..-. .+..+.+.+. ........+|..++.+|..++...++.+.+.+-.++ .....+.++|
T Consensus 466 ~LkaLGN~g~~~------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~-----~n~~e~~EvR 533 (574)
T smart00638 466 YLKALGNAGHPS------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY-----LNRAEPPEVR 533 (574)
T ss_pred HHHhhhccCChh------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH-----cCCCCChHHH
Confidence 999999875421 1111122222 222345789999999999999888876655443333 2345677899
Q ss_pred HHHhhhHHHh
Q 008533 280 LEACEFWHSY 289 (562)
Q Consensus 280 ~~a~~~l~~~ 289 (562)
..|+-.+...
T Consensus 534 iaA~~~lm~t 543 (574)
T smart00638 534 MAAVLVLMET 543 (574)
T ss_pred HHHHHHHHhc
Confidence 9988655443
No 225
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.68 E-value=0.06 Score=33.42 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.3
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.+|.++..+.+.++.|+..|+|++++++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999986
No 226
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.66 E-value=0.55 Score=45.40 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=79.3
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHcCC---CCC-CchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc-------
Q 008533 374 ALDVLSNVFGDEILPTLMPVIQAKLSAS---GDE-AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL------- 442 (562)
Q Consensus 374 ~l~~l~~~~~~~~~~~l~~~l~~~l~~~---~~~-~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l------- 442 (562)
+|..|..--| +..++|++.+.+.+. +.. ++..-...+..+.++..+..=.+.+|+.+++|.++.++
T Consensus 198 aL~sL~tD~g---l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~ 274 (343)
T cd08050 198 ALQSLRTDPG---LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCS 274 (343)
T ss_pred HHHHhccCCC---chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcC
Confidence 4544444333 334555555544421 000 25555556666667776665567899999999988877
Q ss_pred ---CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHH--HHHHHHHHHHH
Q 008533 443 ---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKR--VQEAACSAFAT 505 (562)
Q Consensus 443 ---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~--vr~~a~~al~~ 505 (562)
.+.+..+|.-|+..++.++..+... .....+.++..+.+.+.|+... ..--|...|..
T Consensus 275 ~~~~~~h~~LRd~AA~ll~~i~~~f~~~-----y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 275 RPPDDNHWALRDYAARLLAQICRKFSTS-----YNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSA 337 (343)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHcCCC-----CCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHH
Confidence 2356799999999999999987642 3445678888888888876422 23444444443
No 227
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.50 E-value=3.3 Score=43.67 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=68.1
Q ss_pred cHhhhHHHHHHHHHhhhc-------cchhhhhHHHHHHHHc----CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH
Q 008533 366 NLRKCSAAALDVLSNVFG-------DEILPTLMPVIQAKLS----ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~-------~~~~~~l~~~l~~~l~----~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~ 434 (562)
.++..+.-+++.+....- ..+...+.+.+.+.+. ..+ ...+...+.+||.+..... +..+
T Consensus 412 ~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~LkaLGN~g~~~~------i~~l 482 (574)
T smart00638 412 YLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD---EEEIQLYLKALGNAGHPSS------IKVL 482 (574)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC---chheeeHHHhhhccCChhH------HHHH
Confidence 356667777777765331 1123455555555443 344 5667888899997775322 1222
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhcc--CCHHHHHHHHHHHH
Q 008533 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFA 504 (562)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~~vr~~a~~al~ 504 (562)
.|.+. .-.+..+.+|.+|++++.+++...+. .+.+.++..+.| .++.||.+|+..|.
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~------------~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPR------------KVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 23222 11245689999999999999875432 222233333333 36889998887654
No 228
>PF05536 Neurochondrin: Neurochondrin
Probab=94.42 E-value=6.7 Score=40.67 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=116.9
Q ss_pred cHhhhHHHHHHHHHhhh---ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhh
Q 008533 366 NLRKCSAAALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPL 441 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~ 441 (562)
..+..|...|..++..- ...-+-.-+|.+.+.+.+.+. .....-++.+|..++.. +++....+. ..++.+...
T Consensus 72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~--~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD--LETVDDALQCLLAIASS-PEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHH
Confidence 34556666666666511 112223456777787776551 36677788888888843 322222222 245555555
Q ss_pred cCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc------ccc
Q 008533 442 LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE------ELA 515 (562)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~------~~~ 515 (562)
+.+ ++.....|+.++..+........ -......+..+++.+-..+.......+..++..|+.++..++. .-.
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 544 78889999999888877654210 0012344556666666666655567788889999999877631 122
Q ss_pred ccHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHhhh
Q 008533 516 PRLEIILQHLMMAFGKYQRR-NLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 516 ~~l~~il~~L~~~l~~~~~~-~~~~~~~~l~~l~~~~~~~ 554 (562)
.+...+...+..++.+.-.. .+..++...+.+.+..|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 37888999999998875434 4448899999999998876
No 229
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.41 E-value=18 Score=44.97 Aligned_cols=161 Identities=14% Similarity=0.043 Sum_probs=111.1
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch--------hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--------KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~--------~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
.+++.+.+.+...+ ...+.++..++..+..... ....+..+.+++.+...+.++...-|...+..|+.+
T Consensus 984 i~ldal~~~l~~~~---~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l 1060 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN---SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCL 1060 (3550)
T ss_pred HHHHHHHHHHhccc---hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeee
Confidence 35677888888777 8889999988887665432 223467788899999999999999999999999998
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHH----HHHHHHHHHHHHc-cc----ccc-ccHHHHHHHHHHHHh
Q 008533 461 SKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE----AACSAFATLEEEA-AE----ELA-PRLEIILQHLMMAFG 530 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~----~a~~al~~l~~~~-~~----~~~-~~l~~il~~L~~~l~ 530 (562)
.+.++.. ..-++...++..+.-.+.|...++.. .+-..+..+...+ .+ .-. .....++..++.-+.
T Consensus 1061 ~~~~~~~----~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 1136 (3550)
T KOG0889|consen 1061 IESMPSL----WLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF 1136 (3550)
T ss_pred hhhchHH----HHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 8877632 34556677777777777775333322 3444444444433 11 111 245667777777777
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 008533 531 KYQRRNLRIVYDAIGTLADAVGFELN 556 (562)
Q Consensus 531 ~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (562)
+++..++..+..++..+.+..|.+..
T Consensus 1137 npN~~VR~~~~~~L~~i~~~s~~~v~ 1162 (3550)
T KOG0889|consen 1137 NPNSDVREFSQKLLRLISELSGKSVV 1162 (3550)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCcHH
Confidence 77777777888888888888865543
No 230
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.35 E-value=1.2 Score=41.83 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=101.7
Q ss_pred chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh----h--hhHHHHHHHHhhhcC--------CCChhHH
Q 008533 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----Y--PHLSEIVAFLIPLLD--------DKFPLIR 450 (562)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~----~--~~l~~~~~~l~~~l~--------d~~~~vr 450 (562)
...+.++|.+...+.+.+ ...|.-|+.++..+...+.... . ...+.+-+.+.+++. +....+-
T Consensus 115 ~~~~liiP~iL~llDD~~---~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYS---PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred HhhhHHHhhHHHHhcCCC---HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 456788888888888877 8999999999999998775322 1 223344456666665 5667888
Q ss_pred HHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHH-HHHHhcc----CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHH
Q 008533 451 SISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG-LLKRILD----TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (562)
Q Consensus 451 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~-l~~~l~d----~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L 525 (562)
..|.-++-.+....... +.......+..++.. ++..+.. ++++++...+..+..+++..+-....|+..++..|
T Consensus 192 ~~ay~~L~~L~~~~~~~-~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 192 QAAYPALLSLLKTQEND-DSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHhhccC-CcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88888888887654321 111223334444443 5555432 24888889999999999998888899999999999
Q ss_pred HHHHhhh
Q 008533 526 MMAFGKY 532 (562)
Q Consensus 526 ~~~l~~~ 532 (562)
...+.++
T Consensus 271 ~~~l~np 277 (282)
T PF10521_consen 271 SQILENP 277 (282)
T ss_pred HHHhcCC
Confidence 8888765
No 231
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.26 E-value=1.1 Score=42.38 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHHhh--cchhhhhhhHHHHHHHHhhhcCCCC-hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHH
Q 008533 406 WKDREAAVLALGAIAE--GCIKGLYPHLSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~--~~~~~~~~~l~~~~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 482 (562)
|..-.+++.-+..... ...-..-|+-..+...+..+|+..= ..|-..|+.+...+.+.++.. .....+.-..+
T Consensus 25 WAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~----~L~~dl~i~~~ 100 (307)
T PF04118_consen 25 WADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD----GLAQDLPIYSP 100 (307)
T ss_pred HHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH----HHHhhcHHHHH
Confidence 9888888876666666 2222223444446667777777543 468999999999999887643 34444555566
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 483 GLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
.++..+...+..||..-...+....-..+..+.|.++.++-+++..+++...+....++..+..+...+|.++
T Consensus 101 GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~ 173 (307)
T PF04118_consen 101 GLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY 173 (307)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH
Confidence 6666666667788888888877777667779999999999999999998888888889999999999888873
No 232
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.09 E-value=3.1 Score=36.33 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
.+.+++...+++..+|..+.++++.+.+....+.+ +.+|.++.+..|+++..|..|...+..+.+..+..+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 34667777789999999999999999987643333 5789999999999999999999999999998887653
No 233
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.02 E-value=7.2 Score=38.90 Aligned_cols=262 Identities=12% Similarity=0.054 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHHHHHhhchh-hHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh
Q 008533 193 HTSLRKLSLGSVNQFIMLMPS-ALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (562)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~-~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~ 270 (562)
++.-...+.+.|..++...+. .....++ .++..++.++.++|+.-|..+...|..+.........-....+...+.+-
T Consensus 103 ~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~f 182 (409)
T PF01603_consen 103 SWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRF 182 (409)
T ss_dssp THHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344445555666666654321 1122333 56888888889899999998888888877765544222222333333332
Q ss_pred cC-CCChhHHHHHhhhHHHhhccccchhhHH-hhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccC
Q 008533 271 NK-DTDDDVALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRL 348 (562)
Q Consensus 271 ~~-~~~~~v~~~a~~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 348 (562)
.. ....-.....+++++.+... ..--++ .+..-+..++++.....-
T Consensus 183 i~e~~~~~gI~elLeil~sii~g--f~~plk~eh~~fl~~vllPLh~~~~------------------------------ 230 (409)
T PF01603_consen 183 IYETERHNGIAELLEILGSIING--FAVPLKEEHKQFLRKVLLPLHKSPH------------------------------ 230 (409)
T ss_dssp HHTTS--STHHHHHHHHHHHHTT----SS--HHHHHHHHHTTGGGGGSTG------------------------------
T ss_pred hcCcccccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHHHhcCCc------------------------------
Confidence 22 22223355677888887764 111121 122223333444332110
Q ss_pred CCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhh
Q 008533 349 HGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGL 427 (562)
Q Consensus 349 ~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~ 427 (562)
.......-..++..+...-+ .....++..+....--.+ ......-+.-+..+.+.+. ..+
T Consensus 231 ---------------~~~y~~~L~~~~~~f~~kdp-~l~~~~i~~llk~WP~t~---s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 231 ---------------LSSYHQQLSYCVVQFLEKDP-SLAEPVIKGLLKHWPKTN---SQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp ---------------GGGTHHHHHHHHHHHHHH-G-GGHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHHTT--HHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCC---chhHHHHHHHHHHHHHhcCHHHH
Confidence 00112223334444433222 333344444444443333 5555566677778887764 556
Q ss_pred hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh--HHHHhhhcCCCcchhhHHHHHHHHHHHhcc-----CCHHHHHHHH
Q 008533 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLMGLLKRILD-----TNKRVQEAAC 500 (562)
Q Consensus 428 ~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~il~~l~~~l~d-----~~~~vr~~a~ 500 (562)
......++..+..++.++|..|..+|+..+.+= ...+ ..+...+++.+...|.. -+..||..|.
T Consensus 292 ~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li---------~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~ 362 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI---------SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQ 362 (409)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH---------HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH---------HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777888899999999999999999998776653 2322 34455666666666543 2689999999
Q ss_pred HHHHHHHHHccccc
Q 008533 501 SAFATLEEEAAEEL 514 (562)
Q Consensus 501 ~al~~l~~~~~~~~ 514 (562)
.++..+.+.-++.+
T Consensus 363 ~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 363 NVLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHHTTSHHHH
T ss_pred HHHHHHHHhCHHHH
Confidence 99988877544333
No 234
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.98 E-value=11 Score=40.72 Aligned_cols=129 Identities=18% Similarity=0.247 Sum_probs=86.2
Q ss_pred HhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC
Q 008533 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF 446 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~ 446 (562)
+|..+.-++..++-. .+......+|.+.+-++-.+. ...|.--+.+++.++... ...++.-+|.|..+|.|++
T Consensus 947 vra~~vvTlakmcLa-h~~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLA-HDRLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred HHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHhcCch
Confidence 455555566666543 234455677887776653321 556655555556555433 2235566889999999999
Q ss_pred hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+.||..++-.|+++...- .-.+-..++-.++..+-|.++.+|.-|-.+|+.++..-
T Consensus 1020 ~iVRrqt~ilL~rLLq~~--------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQFG--------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999987631 12233445555555666889999999999999988764
No 235
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=93.76 E-value=12 Score=43.63 Aligned_cols=118 Identities=21% Similarity=0.236 Sum_probs=81.8
Q ss_pred hhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 008533 424 IKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAF 503 (562)
Q Consensus 424 ~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al 503 (562)
...+..|++.++...-..+.++++.|+.-+......+...+. .-+-+.++..|+..+.+.+..--..|...|
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd--------s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL 497 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD--------SYCQQEVVGALVTHIGSGNSQEVDAALDVL 497 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---------HHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345567888888888888899999999999888777776542 112367888887776544433335788888
Q ss_pred HHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 008533 504 ATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (562)
Q Consensus 504 ~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (562)
..++...++.+.||. .++.++++.+..-.....+.+++.+++++-.
T Consensus 498 ~~L~~~~~~~l~~fa-~~l~giLD~l~~Ls~~qiR~lf~il~~La~~ 543 (1426)
T PF14631_consen 498 CELAEKNPSELQPFA-TFLKGILDYLDNLSLQQIRKLFDILCTLAFS 543 (1426)
T ss_dssp HHHHHH-HHHHHHTH-HHHHGGGGGGGG--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 888887777777774 4555666777766667778888888887744
No 236
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=93.67 E-value=9.5 Score=40.07 Aligned_cols=364 Identities=13% Similarity=0.105 Sum_probs=182.7
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCc--CchHHH--HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCC
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGWLEL--LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPG 172 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~w~~l--l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~ 172 (562)
..+.+|...++.+...++.-+.++...+.. ..-..+ ++.|+.++.+.+..++..++-+|..++..-... ++ .
T Consensus 237 e~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~--~N--K 312 (717)
T KOG1048|consen 237 EVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD--SN--K 312 (717)
T ss_pred HHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc--cc--c
Confidence 445677788888888888888888876522 222333 678899999999999999999999987654431 00 0
Q ss_pred CCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhch---hhHHhchHHHHHHHhhh---ccCC-------CHHHH
Q 008533 173 LAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP---SALFVSMDQYLQGLFLL---SNDP-------SAEVR 238 (562)
Q Consensus 173 ~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~---~~~~~~~~~~l~~l~~~---~~~~-------~~~~~ 238 (562)
+--+..+. ++.++..+.. .|.+||+.+..++.++.+... ......+..+.+.++.- ..++ +.++.
T Consensus 313 lai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 00012232 5556666665 688999998888888766511 01111222222222211 1111 23444
Q ss_pred HHHHHHHHHHHhhCc---cchhh---hHHHHHHHHHhhc--CCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHH
Q 008533 239 KLVCAAFNLLIEVRP---SFLEP---HLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVL 310 (562)
Q Consensus 239 ~~~~~~L~~l~~~~~---~~~~~---~l~~i~~~~~~~~--~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l 310 (562)
..+.-||..+..... +.++. .++.++-++.... .+.+......+...+..+.-. ....+.+-........
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr--l~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR--LEAEVPPKYRQVLANI 469 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch--hhhhcCHhhhhHhhcc
Confidence 555556655433221 11221 2333443333222 234444555666555555322 1111111111111100
Q ss_pred HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--chhh
Q 008533 311 LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILP 388 (562)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~~ 388 (562)
-.... +.. ...+..+|...+-...++. ++-+ . .-+..+ .-|. ..-|
T Consensus 470 ~~~~~----------------~~~-~~~~~gcf~~k~~k~~~~~--~~~~-~---pe~~~~---------pkG~e~Lw~p 517 (717)
T KOG1048|consen 470 ARLPG----------------VGP-PAESVGCFGFKKRKSDDNC--DDLP-I---PERATA---------PKGSEWLWHP 517 (717)
T ss_pred ccccc----------------CCC-cccccccccchhhhchhcc--cccC-C---cccccC---------CCCceeeecH
Confidence 00000 000 0011111111110000000 0000 0 000000 0011 0112
Q ss_pred hhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcch---hhhhhhH---HHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 389 TLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCI---KGLYPHL---SEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 389 ~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~---~~~~~~l---~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.++..-..+++ +.+ ...-+++..+|-.++-+.. ..+...+ +..+|.++..++..+..|..+++-++.+++
T Consensus 518 ~vVr~Yl~Ll~~s~n---~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls 594 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKN---DNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLS 594 (717)
T ss_pred HHHHHHHHHHHHhcc---hHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhc
Confidence 22222222222 223 5677888888877776542 2222222 346789999999999999999999999999
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHH
Q 008533 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTN------KRVQEAACSAFATLEE 508 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~------~~vr~~a~~al~~l~~ 508 (562)
..... ....-...|+.|+++|.+.. ..+-..+|.+|.+++.
T Consensus 595 ~d~rn------k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 595 RDIRN------KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred cCchh------hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH
Confidence 76431 22223578889999987753 4555678888888883
No 237
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.67 E-value=0.36 Score=43.88 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC------ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK------FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (562)
-..|.||+.+|.. .+-+.+++|.++..+.+. +..+-...+..+..+.+.- .-...+|+++
T Consensus 212 ~~~r~aAl~sLr~---------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~-----~iFvdPY~hq 277 (450)
T COG5095 212 EQTRDAALESLRN---------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK-----YIFVDPYLHQ 277 (450)
T ss_pred HHHHHHHHHHhcc---------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC-----ceeecHHHHH
Confidence 6788888866542 122444555555544432 1222223333333333221 1236899999
Q ss_pred HHHHHHHHhcc------C----CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhh-h-HHHHHHHHHHHH
Q 008533 480 VLMGLLKRILD------T----NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-R-NLRIVYDAIGTL 547 (562)
Q Consensus 480 il~~l~~~l~d------~----~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~-~-~~~~~~~~l~~l 547 (562)
+||.++.++-- + +..+|.-|+..++.+++..++.....-|.+...+++..-+... . ..--++.+++.+
T Consensus 278 lmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l 357 (450)
T COG5095 278 LMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSIL 357 (450)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence 99999887631 2 2458999999999999998887777778888877776655322 1 122455555554
Q ss_pred HHH
Q 008533 548 ADA 550 (562)
Q Consensus 548 ~~~ 550 (562)
...
T Consensus 358 ~ke 360 (450)
T COG5095 358 SKE 360 (450)
T ss_pred chh
Confidence 443
No 238
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.61 E-value=0.33 Score=36.55 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=48.3
Q ss_pred chhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhh
Q 008533 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAE 421 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~ 421 (562)
++|.+|..|...+..++..++. .+.+.+...+.+.+.+++ .++..+++|+.+|..+..
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~-~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK-KPLGTHYGAIVGLSALGP 78 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHH
Confidence 3799999999999999999975 466778888888887664 358899999999998854
No 239
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.60 E-value=0.17 Score=31.38 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=26.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 479 KVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 479 ~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
..++.|++.|+++++.|+..|+++|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999986
No 240
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=1.3 Score=42.41 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=91.2
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-ccc
Q 008533 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEE 513 (562)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~ 513 (562)
+.-++..+.+.+..||..|...+-.+....+. ....+.-.+++.+.....|.+..||.....++..++... ++.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~-----~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-----ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 34455667888999999999999888876432 345567788888888889999999999999999877654 556
Q ss_pred ccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 514 LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 514 ~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
+.|++.-++..+...+.....+.+...+.-+..++..+++.+
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 899999999999999988777666666667777776666543
No 241
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.38 E-value=17 Score=41.26 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhc---c--chh--hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhhh
Q 008533 371 SAAALDVLSNVFG---D--EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPL 441 (562)
Q Consensus 371 a~~~l~~l~~~~~---~--~~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~--~~~~l~~~ 441 (562)
|...|..++..+. + +++ ...+..+.+.|++.. ..+.--++.+|..+.-...++ ..++-+ .++.+.+.
T Consensus 505 aGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S---LTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnL 580 (2195)
T KOG2122|consen 505 AGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS---LTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNL 580 (2195)
T ss_pred CccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc---eEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHH
Confidence 4455555555442 1 122 245667777777665 666666777788877766543 344433 57888888
Q ss_pred cCCCChhHHHHHHHHHHHhHHH
Q 008533 442 LDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 442 l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
+.++|..+-..++.++-++..+
T Consensus 581 IhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 581 IHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HhhhhhhhhhhHHHHHHHHhcC
Confidence 9999999998888888888765
No 242
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=7.7 Score=36.44 Aligned_cols=132 Identities=8% Similarity=0.069 Sum_probs=83.4
Q ss_pred HhhhHHHHHHHHHhhhccc-hhh-----hhHHHHHHHH-cC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHH-HHHH
Q 008533 367 LRKCSAAALDVLSNVFGDE-ILP-----TLMPVIQAKL-SA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE-IVAF 437 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~-~~~-----~l~~~l~~~l-~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~-~~~~ 437 (562)
.|..+..++..|....|.+ +-. .-.+.+.+.+ ++ ++ +.+-..++.++.-++-..++.-..+++. .-..
T Consensus 300 ~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~---p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~ 376 (461)
T KOG4199|consen 300 NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD---PLVIQEVMAIISILCLRSPDHSAKAIEAGAADL 376 (461)
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC---hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHH
Confidence 4556666776666655542 111 2233333322 22 23 7888888888888887666544444433 2233
Q ss_pred HhhhcC-C-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 438 LIPLLD-D-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 438 l~~~l~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
.++.++ . ....|+.+|||.|.++...-.++ ....+..=++.|+..-+..++.++..|-.+|..+
T Consensus 377 avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-----~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 377 AVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-----RTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-----cchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 444443 3 35689999999999999876543 3556667778888777777888888777777654
No 243
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.10 E-value=30 Score=43.22 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=97.4
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
-+++.|..+++.++...+.++..++..+.......+.+..++.--+....+++.++++.-++.+.-|...+..+..++..
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence 35788999999989999999999999888776655543211111356788888899998888887777766666666666
Q ss_pred chhh-HHhchHHHHHHHhhhccCCCH-------HHHHHHHHHHHHHHhhC--ccchh-hhHHHHHHHHHhhcCCCChhHH
Q 008533 211 MPSA-LFVSMDQYLQGLFLLSNDPSA-------EVRKLVCAAFNLLIEVR--PSFLE-PHLRNLFEYMLQVNKDTDDDVA 279 (562)
Q Consensus 211 ~~~~-~~~~~~~~l~~l~~~~~~~~~-------~~~~~~~~~L~~l~~~~--~~~~~-~~l~~i~~~~~~~~~~~~~~v~ 279 (562)
+|.. +.+....+++.++..+.+... +..+..+.-+...+... .+..+ .....++..+.....++...||
T Consensus 1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 6532 233334555555554433211 12222222222222111 11111 2233444444455566677899
Q ss_pred HHHhhhHHHhhcc
Q 008533 280 LEACEFWHSYFEA 292 (562)
Q Consensus 280 ~~a~~~l~~~~~~ 292 (562)
..+...+..+++.
T Consensus 1144 ~~~~~~L~~i~~~ 1156 (3550)
T KOG0889|consen 1144 EFSQKLLRLISEL 1156 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888776
No 244
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.09 E-value=3 Score=34.49 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=74.3
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhh
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPL 441 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~ 441 (562)
.|.. ..+..+.+... ...-...+..+...+++.+ +.+..-|+..+..++.+|+..+...+ ..++..+...
T Consensus 17 dw~~---il~icD~I~~~--~~~~k~a~ral~KRl~~~n---~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 17 NWGL---ILDVCDKVKSD--ENGAKDCLKAIMKRLNHKD---PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred CHHH---HHHHHHHHhcC--CccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHH
Confidence 3654 33444444432 2223467788888899888 99999999999999999986553322 3355666666
Q ss_pred cCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 442 LDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 442 l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
+.+ .++.|+..++..+..++..+... ..-.++..++..|.
T Consensus 89 ~~~~~~~~Vk~kil~li~~W~~~f~~~----~~l~~i~~~y~~L~ 129 (144)
T cd03568 89 INDRVHPTVKEKLREVVKQWADEFKND----PSLSLMSDLYKKLK 129 (144)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHhCCC----cccHHHHHHHHHHH
Confidence 665 78999999999999999887631 12334455555443
No 245
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.91 E-value=0.53 Score=36.96 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=48.8
Q ss_pred HHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh--HhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 131 ELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI--NIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 131 ~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
+++..|++++. +.++.+..-|+.-++.+++.++..-. .+ -..-..+++++++++++||..|+.|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~---------ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN---------IIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH---------HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH---------HHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 46677777773 44667777788888888888765311 11 22455689999999999999999999887
Q ss_pred Hh
Q 008533 208 IM 209 (562)
Q Consensus 208 ~~ 209 (562)
+.
T Consensus 114 m~ 115 (119)
T PF11698_consen 114 MV 115 (119)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 246
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.81 E-value=14 Score=38.45 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=85.0
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhc---C------cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---G------IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~------~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
.+..+|.+++...|....++.|.++... + +...++++..+.+.+++..|-.|-.|+.++..++..-.....
T Consensus 303 ~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~ 382 (1128)
T COG5098 303 HFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVG 382 (1128)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccc
Confidence 4445666788889998888888887642 1 235677888888999999999999999999999986554332
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
.-.++.......++|-+.-||+.|++.+..+....|
T Consensus 383 ---------~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 383 ---------RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ---------hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 236678888999999999999999999999887555
No 247
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=92.79 E-value=5.2 Score=34.92 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
+.+++.+.+++.+++..+|..|+.++..+.+. ....| ...+|.++.+..|+++.+|..|.+.+..+.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q--GLvnP----------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ--GLVNP----------KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc--CCCCh----------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 45677788888889999999999999988773 11111 4589999999999999999999999999887
Q ss_pred hchhhHHh
Q 008533 210 LMPSALFV 217 (562)
Q Consensus 210 ~~~~~~~~ 217 (562)
.-++.+..
T Consensus 75 K~~s~v~~ 82 (187)
T PF12830_consen 75 KHESLVES 82 (187)
T ss_pred HhHHHHHH
Confidence 66554443
No 248
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.69 E-value=0.52 Score=37.02 Aligned_cols=69 Identities=22% Similarity=0.316 Sum_probs=50.1
Q ss_pred HHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 434 IVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 434 ~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
++..++..|. +.++.+...||.=||.++...|. ....+. ..-..++..+.++++.||..|..|+..+.-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~------gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN------GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG------GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChh------HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666666663 45789999999999999999874 233332 344556677888999999999999998764
No 249
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.22 E-value=11 Score=36.22 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=75.8
Q ss_pred HHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC----CCHHHHHHHHHHHHHHHh
Q 008533 134 QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS----PHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 134 ~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~vr~~al~~l~~~~~ 209 (562)
..+.+.+..+|+.....++.++..++...+.... ....++++.+++.+.+ .+.+++..++.++..+..
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~--------~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE--------KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H--------HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc--------chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 3344467778899999999999999887665422 1123566777776665 345677889999998875
Q ss_pred hch--hhHHhchHHHHHHHhhhc-----cCC--CHHHHHHHHHHHHHHHhh---CccchhhhHHHHHHHHHhhcCC-CCh
Q 008533 210 LMP--SALFVSMDQYLQGLFLLS-----NDP--SAEVRKLVCAAFNLLIEV---RPSFLEPHLRNLFEYMLQVNKD-TDD 276 (562)
Q Consensus 210 ~~~--~~~~~~~~~~l~~l~~~~-----~~~--~~~~~~~~~~~L~~l~~~---~~~~~~~~l~~i~~~~~~~~~~-~~~ 276 (562)
.-+ ..+.. ...++.+...+ ... +.++...++-|+..+.-. .......+ +++.+....+. ..+
T Consensus 180 ~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KE 254 (312)
T PF03224_consen 180 SKEYRQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKE 254 (312)
T ss_dssp SHHHHHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SH
T ss_pred cchhHHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccc
Confidence 321 11211 22233333332 112 233444443333222111 11111122 66666665443 456
Q ss_pred hHHHHHhhhHHHhhcc
Q 008533 277 DVALEACEFWHSYFEA 292 (562)
Q Consensus 277 ~v~~~a~~~l~~~~~~ 292 (562)
.+...++..+..+++.
T Consensus 255 KvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 255 KVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7778888888888876
No 250
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.19 E-value=2.4 Score=35.08 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHH
Q 008533 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAV 551 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~ 551 (562)
..-...+..+.+.|++.++.|+..|...|..++++|+..|... -..+++.|.+++.. ....++..+++.|..-+...
T Consensus 33 ~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 33 NGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 3446788888899999999999999999999999998766543 35777778888877 44556668888888877776
Q ss_pred hh
Q 008533 552 GF 553 (562)
Q Consensus 552 ~~ 553 (562)
+.
T Consensus 113 ~~ 114 (144)
T cd03568 113 KN 114 (144)
T ss_pred CC
Confidence 63
No 251
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=29 Score=40.71 Aligned_cols=192 Identities=12% Similarity=0.051 Sum_probs=124.0
Q ss_pred hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCC--chHHH-HHHHHHHHHHHHhcC
Q 008533 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIR-STVGTIVSVVVQLGG 125 (562)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~--~~~vr-~~~~~~i~~i~~~~~ 125 (562)
....|...+.+ ...+++|++.++.+.+.+.. |..+.....-. .+-..+.+. ++..| ..+..+++.+....+
T Consensus 52 ~~~~l~s~~~~--~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~---~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g 125 (2067)
T KOG1822|consen 52 LEQQLISRLTN--GAGPPTRKLISVAIARLISN-GDSFSLYSRLN---SCNDFLSDGSPSDPQRKLAALSCLGSLYEHYG 125 (2067)
T ss_pred HHHHHHHHHcc--CCCchhHHHHHHHHHHHHhc-cchhhHHHHHH---HhhhhhhcCCCccHHHHHhhccchHHHHHHhh
Confidence 34556777775 78899999999999988877 77655332222 222234342 33333 345667777777654
Q ss_pred c---CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHH
Q 008533 126 I---AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLG 202 (562)
Q Consensus 126 ~---~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~ 202 (562)
+ ....+.++.+.++.+..+...+...+..+...++..+...... .....+.-.....+.+.+-.||.++..
T Consensus 126 ~~~~~~~edt~~if~~~~k~n~s~~~~~i~~~l~~~~~~~g~~s~~~------~~~k~i~l~~k~~lld~s~~v~iaa~r 199 (2067)
T KOG1822|consen 126 RMIGRGLEDTVQIFTKLVKTNESFVRQEIMITLHNALKGMGGTSAAT------ATHKAIRLIAKNSLLDRSFNVKIAAAR 199 (2067)
T ss_pred HhhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccchHHH------HHHHHHHHHHhhhhhhhhHHHHHHhHH
Confidence 3 3467888888888887777777778888888877776421110 123444444555566666679999999
Q ss_pred HHHHHHhhchhhHH-hchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 203 SVNQFIMLMPSALF-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 203 ~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
|+..+....+..+. ..++..-...+......+..+|.+..+++..+....
T Consensus 200 c~~a~s~~~~~~~~~Sele~~~s~cfk~~~~s~~~~r~a~a~~~~~Lla~~ 250 (2067)
T KOG1822|consen 200 CLKAFSNLGGPGLGTSELETLASYCFKGIEISNSEVRCAVAEFLGSLLALG 250 (2067)
T ss_pred HHHHHHhhcCccccchhhhhhcceeeeeeccchHHHHHHHHHHHHHHHhcc
Confidence 99988876554442 233333444555556667888988888888876554
No 252
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=92.13 E-value=1.1 Score=37.25 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=81.7
Q ss_pred HhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh----------------hhhhh
Q 008533 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK----------------GLYPH 430 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~----------------~~~~~ 430 (562)
++.....++..++...-..--|.+++.+.+.++++ .......+..|..+.+...+ .+...
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~----~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS----PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 45556777777777653334567778887777763 67788888888877765432 12334
Q ss_pred HHHHHHHHhhhcCCCC----hhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHHHHH
Q 008533 431 LSEIVAFLIPLLDDKF----PLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAF 503 (562)
Q Consensus 431 l~~~~~~l~~~l~d~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~~al 503 (562)
.+.++..+...+.... ..+...++.+++.+..+++.. ... .++++.+++.++++ ..+..|+.+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-------~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIE-------LIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-------HHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-------HhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 4556666666665322 888999999999998876532 112 34888888888654 4588888775
No 253
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=0.51 Score=40.69 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh--hh
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG--FE 554 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~--~~ 554 (562)
+...++.+...|.+.+-..|..|-.-+..++...++.+.|.+|+++-.|...+...+.+....++.+|..+....| ..
T Consensus 112 y~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~ 191 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGA 191 (262)
T ss_pred chHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccch
Confidence 4456777777777766677888999999999999999999999999999999999888887776766666555444 23
Q ss_pred hhccccC
Q 008533 555 LNQVLLS 561 (562)
Q Consensus 555 ~~~~~~~ 561 (562)
+..||||
T Consensus 192 aLVPfYR 198 (262)
T KOG3961|consen 192 ALVPFYR 198 (262)
T ss_pred hhhhHHH
Confidence 5588886
No 254
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=91.57 E-value=41 Score=41.21 Aligned_cols=246 Identities=18% Similarity=0.180 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhhc----CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc--cCCh-hh--HHHHHHHHhh-h
Q 008533 32 DKSQIWQQLQQYSQ----FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSP-SN--QQYIKSELLP-C 101 (562)
Q Consensus 32 ~r~~A~~~L~~~~~----~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~--~l~~-~~--~~~i~~~ll~-~ 101 (562)
.-..|.+.++.+.. .+.|...+...... ..++.+|..++......++..-. ..++ .. .+.+.+.++. +
T Consensus 460 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~a 537 (2341)
T KOG0891|consen 460 DIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLE--ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVA 537 (2341)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHh
Confidence 34446666666543 34566665554444 67899999996665555433211 1111 11 2222222222 3
Q ss_pred hhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhh
Q 008533 102 LGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (562)
Q Consensus 102 l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~i 181 (562)
+.++++.+|-..-..+. -..+..-.-|+.+..+...+.++.-..+..+...++.++..-+..+ +..+
T Consensus 538 ia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~v-----------l~~l 604 (2341)
T KOG0891|consen 538 IADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYV-----------LPSL 604 (2341)
T ss_pred ccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHH-----------hHHH
Confidence 44666666654433333 1111112235556666666666666667777766666665433221 1111
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 182 LPRLLQFFQS----PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 182 l~~l~~~l~~----~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
-...+..++. .-..+.....+-+...+...+.-....+.+++..+...+.+.+..+-+.+..++..++...+..+.
T Consensus 605 r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~ 684 (2341)
T KOG0891|consen 605 RKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMV 684 (2341)
T ss_pred HHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhh
Confidence 1112222222 111222222222233333333333445556666666666777778888899999999988886666
Q ss_pred hhHHHHHHHHHhhcCCCC-hhHHHHHhhhHHHhhcc
Q 008533 258 PHLRNLFEYMLQVNKDTD-DDVALEACEFWHSYFEA 292 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~-~~v~~~a~~~l~~~~~~ 292 (562)
.+.+..++.+.+.+.+.. ..-|..++..+..+.+.
T Consensus 685 ~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 685 KWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred hccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 666666666666555433 33456667777777665
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.53 E-value=3.1 Score=34.36 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHh
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.-...+..+.+.|++.++.|+..|...|..++++|+..|... -..+++.|.+++.. ....++..+++.|..-+...+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 346788889999999999999999999999999997755543 35677777777764 334566688888888887776
Q ss_pred hh
Q 008533 553 FE 554 (562)
Q Consensus 553 ~~ 554 (562)
.+
T Consensus 118 ~~ 119 (142)
T cd03569 118 NK 119 (142)
T ss_pred CC
Confidence 43
No 256
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=17 Score=39.27 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc---cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA---AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~---~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (562)
.....+|+......|.+++..+|..|...+..-...+ .+.+.|.+....+.++..+...+.-.+..+++||-.+++.
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3456778888888999999999999999887655443 6788899999999999988887777788999999999998
Q ss_pred Hhh
Q 008533 551 VGF 553 (562)
Q Consensus 551 ~~~ 553 (562)
.|+
T Consensus 878 sgD 880 (1014)
T KOG4524|consen 878 SGD 880 (1014)
T ss_pred hhh
Confidence 884
No 257
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=5 Score=45.48 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=103.4
Q ss_pred CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC
Q 008533 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (562)
Q Consensus 46 ~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~ 125 (562)
.|+|+..+...... +....+|......++..+-.+--......+..|+..+..++.+.+-.||..++.+++.+.....
T Consensus 1524 ~~e~l~~l~~~~~~--~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTAD--SSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence 34565555543332 6788999887777777664432225677888999999999999988899999999999998753
Q ss_pred cCchHHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC---CCHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS---PHTSLRKLS 200 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~--~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vr~~a 200 (562)
...-++-........++ .+....++|...|+.++-.+|..+ ...+|..+..+.. ....++.++
T Consensus 1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~v------------P~wip~~L~~Ls~fa~e~~~i~~tv 1669 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVV------------PLWIPKPLMNLSSFARESAAIKQTV 1669 (1710)
T ss_pred cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccc------------hhhhHHHHHHHHhhcCCchHHHHHH
Confidence 33333333333333333 245678899999999999998754 3345555444432 235677777
Q ss_pred HHHHHHHHhhchh
Q 008533 201 LGSVNQFIMLMPS 213 (562)
Q Consensus 201 l~~l~~~~~~~~~ 213 (562)
-+++..+-....+
T Consensus 1670 kktvseFrrth~D 1682 (1710)
T KOG1851|consen 1670 KKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHHHHHHhhh
Confidence 7788776655443
No 258
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=91.28 E-value=0.6 Score=34.75 Aligned_cols=57 Identities=30% Similarity=0.315 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
-..|++++.+|++++...+-.+-++++.++..+....+| ...|+..+-.+++.+=+.
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 468999999999999999888888999999998888886 678888888888887664
No 259
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.24 E-value=16 Score=35.95 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-CH----HHHHHHHHH
Q 008533 428 YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT-NK----RVQEAACSA 502 (562)
Q Consensus 428 ~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~-~~----~vr~~a~~a 502 (562)
-+++...+...-.++++++|.+|..|..+-.++...... +.......+.-++.++...+... .. .++..+...
T Consensus 269 w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~--~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~ 346 (372)
T PF12231_consen 269 WEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP--NELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYS 346 (372)
T ss_pred cHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC--CccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHH
Confidence 467888888888999999999999999999998875432 12223444555556665555433 22 677777777
Q ss_pred HHHHHHH
Q 008533 503 FATLEEE 509 (562)
Q Consensus 503 l~~l~~~ 509 (562)
+++++-.
T Consensus 347 l~~lly~ 353 (372)
T PF12231_consen 347 LCNLLYY 353 (372)
T ss_pred HhchHHH
Confidence 7777644
No 260
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.01 E-value=1.9 Score=36.36 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=83.2
Q ss_pred Hhhhhh--CCchHHHHHHHHHHHHHHHhcCcCchHHHH-HHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCC
Q 008533 98 LLPCLG--AADRHIRSTVGTIVSVVVQLGGIAGWLELL-QALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (562)
Q Consensus 98 ll~~l~--~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll-~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~ 174 (562)
++..|. ..++.+|..+.-+++.+.... ++.+.+.+ ..+...+..++.+....++.++..+....++.-..-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~---- 82 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF---- 82 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC----
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH----
Confidence 444454 357889999999999986332 33444443 4444455444445666777888887776665422111
Q ss_pred cchhHhhHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhc--hhhHHhchHHHHHHHhhhccCCCHH-HHHHHHHHHHH
Q 008533 175 ECPINIFLPRLLQFFQ--SPHTSLRKLSLGSVNQFIMLM--PSALFVSMDQYLQGLFLLSNDPSAE-VRKLVCAAFNL 247 (562)
Q Consensus 175 ~~~~~~il~~l~~~l~--~~~~~vr~~al~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~ 247 (562)
..+.+++.+...+. ..+..+...+++++..-+..- ...+..+.-.++..+++. ++++. +|..+.-.|++
T Consensus 83 --~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~--~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 83 --LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKN--SKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp --CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTT--CC-HH-CHHHHHHHHHH
T ss_pred --hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc--ccchHHHHHHHHHHHhc
Confidence 12456777777777 678889999999998766532 123334444556655443 23344 66666655554
No 261
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=91.01 E-value=3.3 Score=35.47 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=75.4
Q ss_pred hhHHhHHHHHHHHHhhcchhcccccC--CCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHH
Q 008533 145 INHMEGAMDALSKICEDIPQVLDSDV--PGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQY 222 (562)
Q Consensus 145 ~~~~~~al~~l~~i~~~~~~~~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 222 (562)
...+..++..+..+.+..+..+.... +.+....-..+.+.+++.+.+.+..+-..+++++..+.......+...++.+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~ 115 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVF 115 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677899999999999888776321 1122234466777788887777788888999999998877766777677777
Q ss_pred HHHHhh-hccCC--CHHHHHHHHHHHHHHHhh
Q 008533 223 LQGLFL-LSNDP--SAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 223 l~~l~~-~~~~~--~~~~~~~~~~~L~~l~~~ 251 (562)
+..++. .+..+ ...-|..+++++..++..
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 766655 33322 235777788999888864
No 262
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.99 E-value=19 Score=36.38 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=85.7
Q ss_pred hhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhh
Q 008533 364 VWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIP 440 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~ 440 (562)
.|..-.++.-.+..++..+.. .++|.++..+.+.-. . ...|++++..+|.+.+-.... ...++.++..+..
T Consensus 402 ~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~--Q---~~~~~ts~ll~g~~~ew~~~~-p~~le~v~~~~~~ 475 (559)
T KOG2081|consen 402 SWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE--Q---APLRYTSILLLGEYSEWVEQH-PELLEPVLRYIRQ 475 (559)
T ss_pred chHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc--c---hhHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHH
Confidence 477778888888888888743 556666655544322 2 349999999999888744321 2345556667777
Q ss_pred hcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-ccccccHH
Q 008533 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-EELAPRLE 519 (562)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~~~~~~l~ 519 (562)
.+.... ...+|..++.+++..+...+ ....+++..++..+.....+ ..... .+..++.++.+.+ .+..+.++
T Consensus 476 ~~~~~~--~as~~a~~~~~i~~~c~~~~--~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~~~s~i~~~lp~~k~~~~~~ 548 (559)
T KOG2081|consen 476 GLQLKR--LASAAALAFHRICSACRVQM--TCLIPSLLELIRSLDSTQIN--EEAAC-LLQGISLIISNLPAHKAKIALE 548 (559)
T ss_pred Hhhhcc--hhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCHhhhhHHHH
Confidence 777654 77777778888887765431 11233333333333333332 33333 5555555665553 34444444
Q ss_pred HHHH
Q 008533 520 IILQ 523 (562)
Q Consensus 520 ~il~ 523 (562)
++..
T Consensus 549 el~~ 552 (559)
T KOG2081|consen 549 ELCE 552 (559)
T ss_pred HHhh
Confidence 4433
No 263
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.90 E-value=4.3 Score=33.27 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh------hhhhHHHHHHHHHHHHH
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~------~~~~~~~~~~~~l~~l~ 548 (562)
-...+..+.+.|++.++.|+..|...|..++++|+..|...+ ..+++.|++++.. ....++..+++.|..-+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999999987665433 5677777777753 23456668888888777
Q ss_pred HHHh
Q 008533 549 DAVG 552 (562)
Q Consensus 549 ~~~~ 552 (562)
.+.+
T Consensus 116 ~~f~ 119 (139)
T cd03567 116 LELP 119 (139)
T ss_pred HHhc
Confidence 7765
No 264
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.84 E-value=12 Score=33.94 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=112.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHH
Q 008533 229 LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (562)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~ 308 (562)
..+..+++.....++.|..++.+.. ...+.+++.+.........+.+..++..+..+-+.... .-+++..++.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f~~L~~~L~ 81 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HFPFLQPLLL 81 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HHHHHHHHHH
Confidence 4456778888888999988887752 22344555555555555555556666666666554211 1133333322
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (562)
.+........ .+ ....|....+...++..++...++ .-.
T Consensus 82 ~~~~r~~~~~-----------------------------------~~-----~~~~~~~~i~~a~s~~~ic~~~p~-~g~ 120 (234)
T PF12530_consen 82 LLILRIPSSF-----------------------------------SS-----KDEFWECLISIAASIRDICCSRPD-HGV 120 (234)
T ss_pred HHHhhccccc-----------------------------------CC-----CcchHHHHHHHHHHHHHHHHhChh-hHH
Confidence 2111000000 00 012355556666788888888776 445
Q ss_pred hhHHHHHHHH-cCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhh
Q 008533 389 TLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 389 ~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
.+++.+...+ ++.+ ...+..++.++..+++.---+ +......+.+.+. +..|.|-...+..++-+...-.
T Consensus 121 ~ll~~ls~~L~~~~~---~~~~alale~l~~Lc~~~vvd----~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~- 192 (234)
T PF12530_consen 121 DLLPLLSGCLNQSCD---EVAQALALEALAPLCEAEVVD----FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAV- 192 (234)
T ss_pred HHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccC-
Confidence 7778888888 5555 677777888888877432212 2223445555554 4567776665544443332211
Q ss_pred hcCCCcchhhHHHHHHHHHHHhccCC
Q 008533 467 DIGHQNGREQFEKVLMGLLKRILDTN 492 (562)
Q Consensus 467 ~~~~~~~~~~~~~il~~l~~~l~d~~ 492 (562)
...........++..+-+.....+
T Consensus 193 --~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 193 --DSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred --ChhhhhHHHHHHHHHHHhhccccc
Confidence 111234445566666666655544
No 265
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=16 Score=41.67 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=61.1
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHhhCc-cchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHh
Q 008533 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (562)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 301 (562)
+..+.+-+.-.|+..+..++..|..++.... +.....++....+..+...|.+..||..+.+++..+... ..+.+.|
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~--lkk~lsp 120 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK--LKKKLSP 120 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH--HHHHhhH
Confidence 4444444455688999999999999876542 222223344444445677889999999999998887765 5566778
Q ss_pred hhhHHHHHHHhh
Q 008533 302 FLPRLVPVLLSN 313 (562)
Q Consensus 302 ~l~~l~~~l~~~ 313 (562)
++..+++..+..
T Consensus 121 ~LK~li~~wl~~ 132 (1312)
T KOG0803|consen 121 FLKSLIPPWLGG 132 (1312)
T ss_pred HHHhhhhhhhhe
Confidence 888888776533
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.72 E-value=3.9 Score=33.35 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhhh-h-HHHHHHHHHHHHHHH
Q 008533 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R-NLRIVYDAIGTLADA 550 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~~-~-~~~~~~~~l~~l~~~ 550 (562)
..-...+..+.+.|++.++.++..|...|..++++|+..|...+ ..+++.|.+++..... . ++..+++.+..-+.+
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34467788889999999999999999999999999987665433 5677888887776543 2 566888888888887
Q ss_pred Hhh
Q 008533 551 VGF 553 (562)
Q Consensus 551 ~~~ 553 (562)
.+.
T Consensus 113 f~~ 115 (133)
T smart00288 113 FKN 115 (133)
T ss_pred HcC
Confidence 764
No 267
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=90.49 E-value=22 Score=36.25 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHh--hhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc----
Q 008533 369 KCSAAALDVLSN--VFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL---- 442 (562)
Q Consensus 369 ~~a~~~l~~l~~--~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l---- 442 (562)
..+...++.+.. .+|...++.++..+....+..+ ....+..++..++..... ...+..+...|
T Consensus 195 ~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~-----l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 195 EACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVS-----LCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccc-----cchhHHHHHHHHHcCccH------HHHHHHHHHHHcccC
Confidence 346677777765 3466777777777776655432 223344455566543211 11223333333
Q ss_pred --CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHH-HHc
Q 008533 443 --DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLE-EEA 510 (562)
Q Consensus 443 --~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d~~~~vr~~a~~al~~l~-~~~ 510 (562)
..+++.+...|+..++.+.-..++. ....-.+. .+++.+...++..++.|-.....++.+++ ...
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~---~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~ 333 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQ---GYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKY 333 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccC---CcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhh
Confidence 1245677778889999877654221 01111233 48999999999888888888888888888 554
No 268
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.43 E-value=6.1 Score=32.19 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=63.8
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH-HHHHHHHHHhcc---CCHHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILD---TNKRVQEAACSAFATLE 507 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d---~~~~vr~~a~~al~~l~ 507 (562)
...+..|.+.+.+++|.++..|+.++..+.+.++.. .+..+-. ..+..+.+.+.. .++.||..+...+..+.
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~----f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP----FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH----HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 346788889999999999999999999999987642 2333333 555566666654 37899999999999999
Q ss_pred HHccc--cccccHHHHHHH
Q 008533 508 EEAAE--ELAPRLEIILQH 524 (562)
Q Consensus 508 ~~~~~--~~~~~l~~il~~ 524 (562)
..++. .-.+++..+.+.
T Consensus 112 ~~f~~~~~~~~~~~~~y~~ 130 (133)
T cd03561 112 ESFGGHSEDLPGIEDAYKL 130 (133)
T ss_pred HHhcCCCccchHHHHHHHH
Confidence 88754 223444444443
No 269
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=90.40 E-value=20 Score=36.12 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=57.0
Q ss_pred chhcHhhhHHHHHHHHHhhhccchhhhhHH-HHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhh
Q 008533 363 NVWNLRKCSAAALDVLSNVFGDEILPTLMP-VIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIP 440 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~ 440 (562)
..+..|..|..+|+.+...++......++. .+..+|+++. -..|..|...+...+......- .+..+.+.+.+..
T Consensus 99 ~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s---a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 99 VVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS---ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 345779999999999999998766666665 6899999887 8889999999998887664221 1113344555555
Q ss_pred hcCC
Q 008533 441 LLDD 444 (562)
Q Consensus 441 ~l~d 444 (562)
.|.+
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 5553
No 270
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.22 E-value=14 Score=33.57 Aligned_cols=190 Identities=18% Similarity=0.117 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHhhcCC-ChHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhh--
Q 008533 27 PSSTADKSQIWQQLQQYSQFP-DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCL-- 102 (562)
Q Consensus 27 ~d~~~~r~~A~~~L~~~~~~~-~~~~~l~~il~~~-~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l-- 102 (562)
++.+ ......+.|-.+.... ......++++... .+.....+.++..++-...+...... +..+..+....++..
T Consensus 13 ~~~~-~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 13 SDPE-LQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSS 90 (234)
T ss_pred CChH-HHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccc
Confidence 4444 6677777777765544 3333344443321 13334444455544444433221111 222222222222221
Q ss_pred -hC--CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh
Q 008533 103 -GA--ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (562)
Q Consensus 103 -~~--~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l-~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~ 178 (562)
.+ ......-..+..+..++...+. .|+++++.+..++ .+.++..+-.+++.+..+|+.---. +
T Consensus 91 ~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd------------~ 157 (234)
T PF12530_consen 91 FSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD------------F 157 (234)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc------------H
Confidence 12 2344445556788888887655 9999999999999 6778888999999999999432211 2
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch------hhHHhchHHHHHHHhhhccCCC
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------SALFVSMDQYLQGLFLLSNDPS 234 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~~~~~~~~~~l~~l~~~~~~~~ 234 (562)
...+..+.+-+. .+.|-..++.+..++...| +........++..+.+.....+
T Consensus 158 ~s~w~vl~~~l~---~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 158 YSAWKVLQKKLS---LDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred HHHHHHHHHhcC---CccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 223333444342 2334444444555544433 1222334456666666665544
No 271
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=90.18 E-value=27 Score=36.87 Aligned_cols=113 Identities=17% Similarity=0.270 Sum_probs=68.8
Q ss_pred hHHH-HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 129 WLEL-LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 129 w~~l-l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
|-+. +|..+.++.+.++..+..|---+.-+|..-...-. .. ..+. =++.++.++.+.+.+|+..|+.++.++
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~-~v-----rqlg-gI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKS-RV-----RQLG-GIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHH-HH-----HHhc-cHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 6443 67888888888777766665555555544332111 10 0112 267789999999999999999999999
Q ss_pred Hhhchh---hH--H--hchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 008533 208 IMLMPS---AL--F--VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 208 ~~~~~~---~~--~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
+..-.. .+ . +-++.++..+.+ ..|.++++.+.-.|..+-..
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccch
Confidence 874322 11 1 112233333322 24677888877776665544
No 272
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=89.86 E-value=1.9 Score=31.97 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=49.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHH
Q 008533 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (562)
Q Consensus 231 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~ 287 (562)
...+.++|..+++|+..++...+..++.--+.++..+.....+.++++...|++++.
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 346789999999999999999999998888899999888888888888888887654
No 273
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.79 E-value=10 Score=31.17 Aligned_cols=86 Identities=14% Similarity=0.030 Sum_probs=63.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhcc------CCHHHHHHHHHHHHH
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILD------TNKRVQEAACSAFAT 505 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d------~~~~vr~~a~~al~~ 505 (562)
..+..+.+.+++++|.|...|+.++..+.+.++.. .+.+.. ...+..+++.+.. .++.|+..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~----fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER----FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH----HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 46778888999999999999999999999988653 233332 4666777777753 468999999999999
Q ss_pred HHHHccccccccHHHHHHH
Q 008533 506 LEEEAAEELAPRLEIILQH 524 (562)
Q Consensus 506 l~~~~~~~~~~~l~~il~~ 524 (562)
+...++. .|.+......
T Consensus 114 W~~~f~~--~p~~~~~Y~~ 130 (139)
T cd03567 114 WTLELPH--EPKIKEAYDM 130 (139)
T ss_pred HHHHhcc--cchHHHHHHH
Confidence 9988753 2334444433
No 274
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.69 E-value=0.63 Score=28.95 Aligned_cols=41 Identities=29% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 008533 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTL 457 (562)
Q Consensus 415 ~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l 457 (562)
+++.+.+..+.-+ ..+.+...+...+.|++|.||.+|+.++
T Consensus 2 ~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3455555433222 1236788899999999999999998653
No 275
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.54 E-value=5.3 Score=32.89 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhhh-h---HHHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQR-R---NLRIVYDAIGTL 547 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~~-~---~~~~~~~~l~~l 547 (562)
...-...+..+-+.|++.++.++..|...+..++++|+..|...+ ..+++.|.+++..... . +++.+++.|..-
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 345578888899999999999999999999999999987665543 5677788887776432 2 566888888888
Q ss_pred HHHHhh
Q 008533 548 ADAVGF 553 (562)
Q Consensus 548 ~~~~~~ 553 (562)
+...+.
T Consensus 117 ~~~f~~ 122 (140)
T PF00790_consen 117 AEAFKS 122 (140)
T ss_dssp HHHTTT
T ss_pred HHHHCC
Confidence 777743
No 276
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.29 E-value=11 Score=30.79 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-H-HHHHHHhhhcC---CCChhHHHHHHHHHHHhHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-S-EIVAFLIPLLD---DKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~-~~~~~l~~~l~---d~~~~vr~~a~~~l~~l~~ 462 (562)
...+..+...+++++ +.+..-|+..+-.++..|+..+...+ . ..+..+...+. ..++.||..++..+..+..
T Consensus 36 k~a~raL~krl~~~n---~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 36 KEAARAIRKKIKYGN---PHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467788888899888 99999999999999999976553222 1 23333444443 3578999999999999999
Q ss_pred HHhh
Q 008533 463 FIVQ 466 (562)
Q Consensus 463 ~~~~ 466 (562)
.++.
T Consensus 113 ~f~~ 116 (133)
T cd03561 113 SFGG 116 (133)
T ss_pred HhcC
Confidence 8763
No 277
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.88 E-value=43 Score=37.20 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhHHHHHH-HHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVA-FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~~l~~~~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
+.|...+.......+...+.+...+..++. .++...+|-.|.+|..++..||-++..+|... ... ..+.-+-
T Consensus 260 rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~F----l~d---sYLKYiG 332 (1048)
T KOG2011|consen 260 RARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIF----LSD---SYLKYIG 332 (1048)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHH----hcc---hHHHHhc
Confidence 336777777776666666666666666665 34456679999999999999999998876531 111 2223333
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHH
Q 008533 486 KRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 486 ~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
=.|+|.+..||..+..+|..+.+.
T Consensus 333 WtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 333 WTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred ceeecCccHHHHHHHHHHHHHHhc
Confidence 357799999999999999999987
No 278
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=37 Score=36.09 Aligned_cols=157 Identities=16% Similarity=0.196 Sum_probs=100.2
Q ss_pred CChhhHHHHHHHHhhhhhCC-------chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHH
Q 008533 86 MSPSNQQYIKSELLPCLGAA-------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKI 158 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~-------~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i 158 (562)
++++....+.+.++..+... ++......+.-++.++... ++.+..+...+...+-.+|..++..+..+
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSAL 149 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHH
Confidence 44444444445555444321 3334445666666665432 56778888888878889999999999999
Q ss_pred hhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH-HhchHHHHHHHhhhccC---CC
Q 008533 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-FVSMDQYLQGLFLLSND---PS 234 (562)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-~~~~~~~l~~l~~~~~~---~~ 234 (562)
...-+..+..- + ...+.-+..++..+.|...-+|..++-.+..++...+..= .-.++.++..++..+.. .|
T Consensus 150 ls~r~~e~q~~---l--l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~d 224 (970)
T KOG0946|consen 150 LSCRPTELQDA---L--LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLD 224 (970)
T ss_pred HhcCCHHHHHH---H--HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 98887754321 0 0123345567888899999999999999999988665310 11245566777766532 22
Q ss_pred -HHHHHHHHHHHHHHHhhC
Q 008533 235 -AEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 235 -~~~~~~~~~~L~~l~~~~ 252 (562)
.-+...++..|..+.++.
T Consensus 225 GgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 225 GGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred CcchHHHHHHHHHHHHhhC
Confidence 246667777777777654
No 279
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=88.47 E-value=58 Score=38.27 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=71.0
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
.+.++.++.....++.+.++.++..|...+..++..+.... -.+++..|+..+.+++..-...|+.+|.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-----------qqeVv~~Lvthi~sg~~~ev~~aL~vL~ 498 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-----------QQEVVGALVTHIGSGNSQEVDAALDVLC 498 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-----------HHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-----------HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788899988899999999999999999888888775432 2456666666554444444468899999
Q ss_pred HHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 008533 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLI 249 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~ 249 (562)
.++...++.+.++ ..++..++..+.+-+..--+.++..|+.++
T Consensus 499 ~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 499 ELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8888666555443 334555554443322322334566666655
No 280
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=88.33 E-value=27 Score=34.22 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-----DTNKRVQEAACSAFATL 506 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----d~~~~vr~~a~~al~~l 506 (562)
++++..+..-+.+.+.....++..+||+++..-... ..-.-.++++.++.++. |.+.+++-++++||.++
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-----i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-----IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-----HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence 347888888888888999999999999998642211 01111355666665553 34688888999999998
Q ss_pred HHH
Q 008533 507 EEE 509 (562)
Q Consensus 507 ~~~ 509 (562)
.--
T Consensus 389 ~IP 391 (604)
T KOG4500|consen 389 MIP 391 (604)
T ss_pred ccc
Confidence 744
No 281
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=88.26 E-value=3.4 Score=30.65 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred hhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 008533 177 PINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (562)
Q Consensus 177 ~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 246 (562)
.-..++.++...+.+ .+.++|...+.|+..++....+.+..--+.++..+-....+.++++...+++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 446678888887654 5789999999999999987766555444556666666667777888888887764
No 282
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.95 E-value=10 Score=31.23 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=56.5
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCCC--Ch--hHHHHHHHHHHHh
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDK--FP--LIRSISCWTLSRF 460 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~l~d~--~~--~vr~~a~~~l~~l 460 (562)
....+..+...+.+.+ +.+..-|+..+-.++.+|+..+...+ ..++..+...+.++ .+ .||..++..+..+
T Consensus 40 ~kea~~~l~krl~~~~---~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 40 AKEAARALRKRLKHGN---PNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 3577788999999988 99999999999999999976553322 23455555544422 22 2999999999999
Q ss_pred HHHHh
Q 008533 461 SKFIV 465 (562)
Q Consensus 461 ~~~~~ 465 (562)
+..+.
T Consensus 117 ~~~f~ 121 (140)
T PF00790_consen 117 AEAFK 121 (140)
T ss_dssp HHHTT
T ss_pred HHHHC
Confidence 99884
No 283
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=87.87 E-value=15 Score=35.52 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=51.6
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHH-HH-hhchhhHHhchHHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhC
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ-FI-MLMPSALFVSMDQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~-~~-~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~~ 252 (562)
+....++..+..++++++-.|.+.|+-.++. ++ ..+.+.-...++.+.+.+....+ +-+..+...++..+-.+.+..
T Consensus 337 k~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd 416 (457)
T KOG2085|consen 337 KIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMD 416 (457)
T ss_pred HHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445566667778888888998888876653 22 22222112223444555555443 345567777788888888877
Q ss_pred ccchhhhH
Q 008533 253 PSFLEPHL 260 (562)
Q Consensus 253 ~~~~~~~l 260 (562)
++.|....
T Consensus 417 ~~LFeec~ 424 (457)
T KOG2085|consen 417 PKLFEECL 424 (457)
T ss_pred HHHHHHHH
Confidence 77664433
No 284
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.67 E-value=1.1 Score=27.87 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHH
Q 008533 116 IVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDAL 155 (562)
Q Consensus 116 ~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l 155 (562)
+++.++..++. -.-+.+...+.+.+.++++.+|.+++.++
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 56677776643 34568888899999999999999988653
No 285
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=87.58 E-value=14 Score=31.19 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=75.1
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhh----hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH-HH
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY----PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS-KF 463 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~----~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~ 463 (562)
.+-|.+..+++.++ .++.....|+.+.......+- .-=+.+...|...- ...| ..|...+..+. ..
T Consensus 3 eikplLIsCL~~q~-----~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l 73 (174)
T PF04510_consen 3 EIKPLLISCLTMQE-----TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPL 73 (174)
T ss_pred chHHHHHHHHHhhc-----ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchh
Confidence 45577777777554 234444455554443221111 01112223332221 2222 44566666666 33
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhccCC-HHHH--HHHH-HHHHHHHHHc-----cccccccHHHHHHHHHHHHhhhhh
Q 008533 464 IVQDIGHQNGREQFEKVLMGLLKRILDTN-KRVQ--EAAC-SAFATLEEEA-----AEELAPRLEIILQHLMMAFGKYQR 534 (562)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~-~~vr--~~a~-~al~~l~~~~-----~~~~~~~l~~il~~L~~~l~~~~~ 534 (562)
..++ ..++++.+++.+.+.|.++. ..+. .-|. .++...+... .+.+...++.+++.+.++++...+
T Consensus 74 ~~ef-----l~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E 148 (174)
T PF04510_consen 74 YGEF-----LIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGME 148 (174)
T ss_pred hhhH-----HHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 3333 57788888999999988762 2332 1122 1222222211 244566677777777777777655
Q ss_pred -hHHHHHHHHHHHHHH
Q 008533 535 -RNLRIVYDAIGTLAD 549 (562)
Q Consensus 535 -~~~~~~~~~l~~l~~ 549 (562)
..++.+++-+..+.+
T Consensus 149 ~~~l~rgl~~~e~~v~ 164 (174)
T PF04510_consen 149 VGFLRRGLRDFESFVS 164 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 455667766666554
No 286
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=87.50 E-value=0.69 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.++.+.+.+.++++.++..|+|+|++++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777788889999999999999886
No 287
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=87.49 E-value=29 Score=33.68 Aligned_cols=117 Identities=13% Similarity=0.110 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC
Q 008533 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (562)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~ 273 (562)
.++....+.++..++.+-...-...-+.++..+...+.. ...+.++.+|.-.+-..|..+.++++.++.-+.+....
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~~k~~qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt 287 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHFSKQEQDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 467777778888877764311112233556666655543 23456777777777777888888888777665544333
Q ss_pred CChhHHHHHhhhHHHhhccc-cchhhH-HhhhhHHHHHHHhhcc
Q 008533 274 TDDDVALEACEFWHSYFEAQ-LPHENL-KEFLPRLVPVLLSNMI 315 (562)
Q Consensus 274 ~~~~v~~~a~~~l~~~~~~~-~~~~~~-~~~l~~l~~~l~~~l~ 315 (562)
..+....+||+..+++.+ .....+ ...+..++..+++++.
T Consensus 288 --~~~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 288 --PNMAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred --hhhHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 335667899999999886 443332 3455667777776654
No 288
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=87.39 E-value=31 Score=33.96 Aligned_cols=147 Identities=12% Similarity=-0.007 Sum_probs=89.8
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh----------cC-CCcch
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD----------IG-HQNGR 474 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----------~~-~~~~~ 474 (562)
-..-...+.++-.+....++.+......=+|.++..+-+....+|..|..+...+...+++. ++ +....
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~ 227 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG 227 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence 45667778888888888887777777767788888888888889988776666665544321 00 00111
Q ss_pred hhHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 475 EQFEKVLMGLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.+.+-+.+.+..++.+ .+...--....++..++..-.-.--+++...+......++..+...+..++.|-..++....
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445555556666665 23222223333333333221122335677777777777777776777788888888777544
No 289
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.33 E-value=4.2 Score=34.26 Aligned_cols=131 Identities=15% Similarity=0.030 Sum_probs=81.9
Q ss_pred cHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhh--HHHHHHHHhhhcC
Q 008533 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPH--LSEIVAFLIPLLD 443 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~--l~~~~~~l~~~l~ 443 (562)
++|..+.-++..+-...++.....+..++...+...+ ......++.++..+..+..+.-... -+.+++.+.+...
T Consensus 20 ~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~---~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 20 EVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGE---MDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccc---chhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 4788888888777655555666677788888887665 5567777788888877775432221 1345666666666
Q ss_pred --CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHH-HHHHHHHHHHH
Q 008533 444 --DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKR-VQEAACSAFAT 505 (562)
Q Consensus 444 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~-vr~~a~~al~~ 505 (562)
.++..+..+++.+++.-+..-.- ..-.....++.|-...+ +++.. +|..|+-.|..
T Consensus 97 ~~~~~~~~~~~~lell~aAc~d~~~------r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLSAACIDKSC------RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHHHHTTSHHH------HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHccHHH------HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 67788999999888876643211 12223444555555553 34455 78877776653
No 290
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.32 E-value=7 Score=32.25 Aligned_cols=78 Identities=14% Similarity=0.003 Sum_probs=58.8
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~ 509 (562)
...+..|.+.+.+.+|.+...|+.++..+.+.++.. .+.++ -..+++.+.+.+. ..++.|+..+...+......
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~----fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH----FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH----HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 346778888899999999999999999999987642 12222 2455666666664 45789999999999999988
Q ss_pred cccc
Q 008533 510 AAEE 513 (562)
Q Consensus 510 ~~~~ 513 (562)
++..
T Consensus 116 f~~~ 119 (142)
T cd03569 116 FRNK 119 (142)
T ss_pred hCCC
Confidence 7543
No 291
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=87.18 E-value=30 Score=33.46 Aligned_cols=174 Identities=16% Similarity=0.077 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh
Q 008533 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (562)
Q Consensus 109 vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (562)
.+..+..++..|... -+..+...+++..+.....++..|..++..-+.....++-+.++ .....++.++.-
T Consensus 42 ~~~~g~~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-~~~~~l~kll~~ 112 (330)
T PF11707_consen 42 FQSYGLELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFD-FSLKSLPKLLTP 112 (330)
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchhhHHHHhcc
Confidence 555455555555542 27788888888887788899999999988443322111000010 112233333321
Q ss_pred hcC--CC--------HHHHHHHHHHHHHHHhhchhhHHhc-h--HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccc
Q 008533 189 FQS--PH--------TSLRKLSLGSVNQFIMLMPSALFVS-M--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSF 255 (562)
Q Consensus 189 l~~--~~--------~~vr~~al~~l~~~~~~~~~~~~~~-~--~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 255 (562)
=.. .. +.+|...++.+.+++...+..+... + ..++..+++.+..+..++...++++|..-+-... .
T Consensus 113 ~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~ 191 (330)
T PF11707_consen 113 RKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-S 191 (330)
T ss_pred ccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-C
Confidence 110 01 2899999999998888766544322 1 1347778777776667888888888876433222 2
Q ss_pred hhhhHH------HHHHHHHhhcCCCC----hhHHHHHhhhHHHhhcc
Q 008533 256 LEPHLR------NLFEYMLQVNKDTD----DDVALEACEFWHSYFEA 292 (562)
Q Consensus 256 ~~~~l~------~i~~~~~~~~~~~~----~~v~~~a~~~l~~~~~~ 292 (562)
+....+ ..+.-+.......+ ..++..+-+|+..+|..
T Consensus 192 v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 192 VSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 222111 12222222222223 37888888999888876
No 292
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.07 E-value=32 Score=33.75 Aligned_cols=160 Identities=9% Similarity=0.135 Sum_probs=100.6
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHH-HHHhhcC--CCHHHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPR-LLQFFQS--PHTSLRKLSLG 202 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~-l~~~l~~--~~~~vr~~al~ 202 (562)
.-.|..+.+.+...+-+++..+|-+|+.++++++.+...... ....=++. +...+.. .+..-|.+|+|
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~---------~~~l~id~~ii~SL~~~~~~~~ER~QALk 90 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQI---------LLKLHIDIFIIRSLDRDNKNDVEREQALK 90 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHH---------HHHcCCchhhHhhhcccCCChHHHHHHHH
Confidence 357888888888766666689999999999999887654210 01111111 3334433 34567999999
Q ss_pred HHHHHHhh--chhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhh--hHHHHHHHHHhhcCCCChhH
Q 008533 203 SVNQFIML--MPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP--HLRNLFEYMLQVNKDTDDDV 278 (562)
Q Consensus 203 ~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~--~l~~i~~~~~~~~~~~~~~v 278 (562)
.+..++.. .+..+ =..+++.+.....+.+...|..+++.|++++-..|+.+.. -+..++..+.. ...++
T Consensus 91 liR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~ 163 (371)
T PF14664_consen 91 LIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSI 163 (371)
T ss_pred HHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhH
Confidence 99998876 22222 2356778888777888899999999999999888876432 23334443333 22224
Q ss_pred HHHHhhhHHHhhccccchhhHHh
Q 008533 279 ALEACEFWHSYFEAQLPHENLKE 301 (562)
Q Consensus 279 ~~~a~~~l~~~~~~~~~~~~~~~ 301 (562)
....+..+..+...+...+++++
T Consensus 164 ~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 164 SESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHHHHHhCCcchhhhhcC
Confidence 44455555556655544444444
No 293
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=86.83 E-value=3.1 Score=37.22 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
+.+.+.+.+...|++. |..|.+....+. .... ...+.++..+...+.|++..||.+..|+|..++...+
T Consensus 119 ~~~~~~~~~W~~s~~~--w~rR~~~v~~~~-~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 119 PEALELLEKWAKSDNE--WVRRAAIVMLLR-YIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp GGHHHHHHHHHHCSSH--HHHHHHHHCTTT-HGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHhCCcH--HHHHHHHHHHHH-HHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 5678888888888772 555555433332 2221 5567788888888999999999999999999988654
No 294
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=86.69 E-value=5.3 Score=30.04 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=48.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHhhhhhcccc
Q 008533 490 DTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRI---VYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 490 d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~---~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+++..+|..|+..|+.+++..++.....-+.+++.+.+.+.+++. .... ++-+++.+...+=..++-|.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~-~~~t~YGAi~gL~~lG~~~vr~~ilP~l 89 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK-PLGTHYGAIVGLSALGPEAVRALILPNL 89 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 447899999999999999998777666777888888888887654 3333 444444444333333444543
No 295
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.48 E-value=8 Score=35.88 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=68.2
Q ss_pred HHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcc
Q 008533 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (562)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (562)
+...+.+.+ +.+|.+|+..+..+..+....+..+-...++.+.+.+.+..+ -.-|+.++.+++..-. ..
T Consensus 8 lv~ll~~~s---P~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~------l~ 76 (353)
T KOG2973|consen 8 LVELLHSLS---PPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE------LR 76 (353)
T ss_pred HHHHhccCC---hHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH------HH
Confidence 445566676 899999997666665554455566677788889999998777 4456677777776432 12
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+..++.++..++.++.|+-......+|..+.++.+
T Consensus 77 ~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 77 KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33444456666666666645555666666666653
No 296
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.22 E-value=35 Score=33.33 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=53.2
Q ss_pred HHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 433 EIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 433 ~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+++..++..|.. .+|.+-.-||.=||.+..+.|+- ...+. +.=+.+++.++++++.||-+|..|+..+.-
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 377788888874 45999999999999999998752 22222 223456677788999999999999988764
No 297
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.76 E-value=36 Score=33.05 Aligned_cols=201 Identities=14% Similarity=0.075 Sum_probs=101.3
Q ss_pred hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHH----hc
Q 008533 49 FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ----LG 124 (562)
Q Consensus 49 ~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~----~~ 124 (562)
....+..++.. +.++.........|-...... +.+.-..+-+.+.+++.+..+.+|+.....++.+.. ..
T Consensus 23 i~~~l~~~~~K--E~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 23 IVQGLSPLLSK--ESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 44556666665 677777766666555555443 333334555667778999888899999999999987 22
Q ss_pred CcCchHHHHHHHHHHh----ccCChhHHhHHHHHHHHHhhc---chhccccc---CCCC-Cc-chhHhhHHHHHHhhcCC
Q 008533 125 GIAGWLELLQALVTCL----DSNDINHMEGAMDALSKICED---IPQVLDSD---VPGL-AE-CPINIFLPRLLQFFQSP 192 (562)
Q Consensus 125 ~~~~w~~ll~~l~~~l----~~~~~~~~~~al~~l~~i~~~---~~~~~~~~---~~~~-~~-~~~~~il~~l~~~l~~~ 192 (562)
.......++|.|.+.+ .++.+....+.+.+...++.. ........ ...+ .+ +..--+-+.+.+-+ .
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 2334455555555555 444333221211111111110 00000000 0000 00 00000112222222 2
Q ss_pred CHHHHHHHHHHHHHHHhhchhhHHhc-hHHHHHHHhhhccCC--CHHHHHHHHHHHHHHHhhCccchh
Q 008533 193 HTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~--~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
+.+...-.++++..+....++...+. ...+-+.++..+-++ ..++|+.+++.+..+....+..+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~ 242 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPELLS 242 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHH
Confidence 23334444455555444433322222 233445555544444 689999999999999888777543
No 298
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=85.74 E-value=5.4 Score=31.88 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=55.5
Q ss_pred hhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 429 PHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 429 ~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
.++..++|.+...+. .+.+..|.++.-.++.++...+ -..+.+..++..+.+....... ...+..++..++
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~------L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP------LSDEVLNALMESILKNWTQETV--QRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC------CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHH
Confidence 467889999999999 7889999999999999998754 3466677777777766554333 456777777777
Q ss_pred HH
Q 008533 508 EE 509 (562)
Q Consensus 508 ~~ 509 (562)
..
T Consensus 74 q~ 75 (121)
T PF12397_consen 74 QS 75 (121)
T ss_pred Hc
Confidence 54
No 299
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=79 Score=36.74 Aligned_cols=203 Identities=17% Similarity=0.226 Sum_probs=106.8
Q ss_pred CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHH
Q 008533 104 AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLP 183 (562)
Q Consensus 104 ~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~ 183 (562)
+.+..||..+.+|++.-. ...|..++..+.....+.+....+.+...+..+........-+.. . ..+.+.++
T Consensus 1048 s~s~~Irelv~rC~~~ni----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~---~-~sf~d~v~ 1119 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSNI----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQE---M-DSFKDCVK 1119 (1514)
T ss_pred cCcchhHHHHHhhhhhhh----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhh---h-HHHHHHHH
Confidence 457789999999999332 357999999888888888888888888888766655443221100 0 12333444
Q ss_pred HHHHhhcCC-CHHHHHHHHHHHHHHHhhchh-----hHH--------hchHHHHHHHhh---hccCCCHHHHHHHHHHHH
Q 008533 184 RLLQFFQSP-HTSLRKLSLGSVNQFIMLMPS-----ALF--------VSMDQYLQGLFL---LSNDPSAEVRKLVCAAFN 246 (562)
Q Consensus 184 ~l~~~l~~~-~~~vr~~al~~l~~~~~~~~~-----~~~--------~~~~~~l~~l~~---~~~~~~~~~~~~~~~~L~ 246 (562)
.+.....+. .+.....+++-+..++....+ .+. .+...+.+.++. ...+....+|..+++.+-
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF 1199 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLF 1199 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHH
Confidence 444444321 122222222222222221111 111 011122233222 233556889999999999
Q ss_pred HHHhhCccchhhhHH-HHHHHHHhhcC----CCCh--------hHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh
Q 008533 247 LLIEVRPSFLEPHLR-NLFEYMLQVNK----DTDD--------DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 247 ~l~~~~~~~~~~~l~-~i~~~~~~~~~----~~~~--------~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
.+...+++.|.+.+- .++..++.... +.+. .....|+..+..+-.. ..+.+...++.++..+..+
T Consensus 1200 ~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~--~~~~l~~lL~~~~~ll~~c 1277 (1514)
T KOG0929|consen 1200 DILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQ--FFKQLNNLLPKVLGLLVGC 1277 (1514)
T ss_pred HHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 998888877776553 55664333221 1111 1123334444433332 4444555556666565555
Q ss_pred ccc
Q 008533 314 MIY 316 (562)
Q Consensus 314 l~~ 316 (562)
.+.
T Consensus 1278 i~~ 1280 (1514)
T KOG0929|consen 1278 IKQ 1280 (1514)
T ss_pred hcC
Confidence 553
No 300
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=6.1 Score=44.79 Aligned_cols=91 Identities=9% Similarity=-0.000 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh
Q 008533 109 IRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (562)
Q Consensus 109 vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (562)
|-..++.+++.++..++. .|+.+...+.....+++++.|..|+..+..+....++...+ .+.+.+|.+-++
T Consensus 1520 v~~~li~~i~~~~~a~~~-d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~--------lL~q~iPfLaEL 1590 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKD-DLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIV--------LLPQSIPFLAEL 1590 (1621)
T ss_pred HHHHHHHHHHhhccCChh-hhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHH--------hhhhhhHHHHHH
Confidence 334444444444444433 39999999999999999999999999999999988876542 568889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHH
Q 008533 189 FQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~ 208 (562)
+.|.+.+|...+-+.+..+=
T Consensus 1591 ~ED~~~~Ve~~~q~li~q~e 1610 (1621)
T KOG1837|consen 1591 MEDEDDEVECLCQKLIRQLE 1610 (1621)
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 99998888887777555443
No 301
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.63 E-value=12 Score=35.80 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=68.6
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhh
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPL 441 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~ 441 (562)
.|.+ ..+.++.+.... ..-...+..+...+++.+ +.+..-|+..+++++.+|++.+..-+ ..+...+...
T Consensus 25 nW~~---IlDvCD~v~~~~--~~~kd~lk~i~KRln~~d---phV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 25 NWSL---ILDVCDKVGSDP--DGGKDCLKAIMKRLNHKD---PHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred cHHH---HHHHHHhhcCCC--cccHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 5776 444555555443 223467788888999988 99999999999999999987653322 2344555555
Q ss_pred cC-CCChhHHHHHHHHHHHhHHHHhh
Q 008533 442 LD-DKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 442 l~-d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
+. ..++.|+.....++-++++.+..
T Consensus 97 ~~~~~h~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 97 IESKAHPKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhcc
Confidence 55 57899999999999999987653
No 302
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.60 E-value=11 Score=36.03 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=69.0
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
|......|--++.--++ -...+..|.++++..+|.|...|+.+++.+...++.-++-..-...+..-+..++
T Consensus 26 W~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred HHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH
Confidence 87766555444432222 2346888999999999999999999999999988753221111222333333333
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHcccccc-ccHHHHHHHHHH
Q 008533 486 KRILDTNKRVQEAACSAFATLEEEAAEELA-PRLEIILQHLMM 527 (562)
Q Consensus 486 ~~l~d~~~~vr~~a~~al~~l~~~~~~~~~-~~l~~il~~L~~ 527 (562)
.. ..++.|+......+..+.+.++..-. ..+..+.+.|..
T Consensus 98 ~~--~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~klk~ 138 (462)
T KOG2199|consen 98 ES--KAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKLKE 138 (462)
T ss_pred hh--cccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 22 45788998888888888887743221 234444444433
No 303
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=84.18 E-value=2.1 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 479 KVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 479 ~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
..++.+++.++++++.++..|+++|.+++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36777888888888999999999999875
No 304
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=84.14 E-value=4.6 Score=31.09 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHHhhh
Q 008533 472 NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE-LAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 472 ~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~-~~~~l~~il~~L~~~l~~~ 532 (562)
...++++.++..+...+.+=.+.||.-|...|.-+++.+++. +..+...+++..+.++...
T Consensus 4 ~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 4 LLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 357788888888888898888999999999999999999887 7778889999999999875
No 305
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=84.12 E-value=4.6 Score=35.50 Aligned_cols=72 Identities=17% Similarity=0.075 Sum_probs=57.5
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 008533 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQ 557 (562)
Q Consensus 486 ~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 557 (562)
..|+-........+...++.+++.++..-.|++.++++.+.++-...+...+..+=.++|..++++|++.+-
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 334334456677788888888998888888999999999988888777566778999999999999998653
No 306
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=83.33 E-value=33 Score=30.56 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhC-CchHHHHHH-HHHHHHHHHhcCcCchHHHHHHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHIRSTV-GTIVSVVVQLGGIAGWLELLQALVTC 139 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~vr~~~-~~~i~~i~~~~~~~~w~~ll~~l~~~ 139 (562)
+..-+.|.+|+.++...... .++... ..+-..+.. .+..+...+ ..+++.+.... +.+.+.+.++
T Consensus 62 ~~~~E~~~la~~il~~~~~~----~~~~~~----~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-----~~~~~~~~~W 128 (213)
T PF08713_consen 62 SGYREERYLALLILDKRRKK----LTEEDL----ELLEKWLPDIDNWATCDSLCSKLLGPLLKKH-----PEALELLEKW 128 (213)
T ss_dssp SSCHHHHHHHHHHHHHCGGG------HHHH----HHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----GGHHHHHHHH
T ss_pred CchHHHHHHHHHHhHHHhhh----hhHHHH----HHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----HHHHHHHHHH
Confidence 55688888888877554322 222211 122223332 466666655 55566665432 6788899999
Q ss_pred hccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc
Q 008533 140 LDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS 218 (562)
Q Consensus 140 l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 218 (562)
+.|+++-.|..|+.++...... .....++..+...+.+++.-||.+.-.+|..+....|+...+.
T Consensus 129 ~~s~~~w~rR~~~v~~~~~~~~--------------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 129 AKSDNEWVRRAAIVMLLRYIRK--------------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp HHCSSHHHHHHHHHCTTTHGGG--------------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999998776544443 1346677777888899999999999999999888766544443
No 307
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.29 E-value=23 Score=28.82 Aligned_cols=89 Identities=12% Similarity=0.176 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCC--CCh
Q 008533 372 AAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDD--KFP 447 (562)
Q Consensus 372 ~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~l~d--~~~ 447 (562)
.+..+.+... +..-...+..+...+++++ +.+..-|+..+..++..|+..+...+ ..++..+...+.+ .++
T Consensus 22 l~icD~i~~~--~~~~k~a~r~l~krl~~~n---~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~ 96 (133)
T smart00288 22 LEICDLINST--PDGPKDAVRLLKKRLNNKN---PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP 96 (133)
T ss_pred HHHHHHHhCC--CccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH
Confidence 3444444333 2223467788888999888 89999999999999999976553322 2355566666654 334
Q ss_pred hHHHHHHHHHHHhHHHHh
Q 008533 448 LIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~ 465 (562)
.|+..++..+..++..+.
T Consensus 97 ~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 97 LVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 599999999999999875
No 308
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=83.08 E-value=3.4 Score=29.39 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHH
Q 008533 408 DREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 408 ~r~aal~~l~~i~~~~~~~~~~~l~--~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 464 (562)
.++++++++|.++..... .++++ .+++.+++... .+...||..+.+++|-++...
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 468999999999875321 22333 47888888775 678999999999999998753
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.79 E-value=16 Score=28.74 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=52.2
Q ss_pred chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhh----hc--CCCChhHHHHHHHH
Q 008533 385 EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIP----LL--DDKFPLIRSISCWT 456 (562)
Q Consensus 385 ~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~--~~~~l~~----~l--~d~~~~vr~~a~~~ 456 (562)
.....++..+...+++.+ |++..-|+..+-.++..+++.+...+.. ++..++. .. .+.+..||..+..+
T Consensus 33 ~~~~~~~~~l~kRl~~~~---~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l 109 (115)
T cd00197 33 VGPKEAVDAIKKRINNKN---PHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIEL 109 (115)
T ss_pred ccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHH
Confidence 445678899999999887 9999999999999999987655443322 1222221 11 24578999999887
Q ss_pred HHHhH
Q 008533 457 LSRFS 461 (562)
Q Consensus 457 l~~l~ 461 (562)
+..+.
T Consensus 110 ~~~w~ 114 (115)
T cd00197 110 VQLWA 114 (115)
T ss_pred HHHHh
Confidence 76553
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.59 E-value=23 Score=28.24 Aligned_cols=72 Identities=10% Similarity=0.060 Sum_probs=51.3
Q ss_pred hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH---HHHHHHhhhccC--------CCHHHHHHHHHHHH
Q 008533 178 INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSND--------PSAEVRKLVCAAFN 246 (562)
Q Consensus 178 ~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~l~~l~~~~~~--------~~~~~~~~~~~~L~ 246 (562)
..+++..|.+-|++.++.|+..+++++..++...++.|...+. .++..+.+.-+. ....||..+-+++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 5678888999999999999999999999999987776665443 344444443321 22467877777765
Q ss_pred HHH
Q 008533 247 LLI 249 (562)
Q Consensus 247 ~l~ 249 (562)
.+.
T Consensus 116 ~if 118 (122)
T cd03572 116 AIF 118 (122)
T ss_pred HHh
Confidence 543
No 311
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=46 Score=31.55 Aligned_cols=286 Identities=15% Similarity=0.151 Sum_probs=144.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHH
Q 008533 188 FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEY 266 (562)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~ 266 (562)
.-.+++..+...++.++..+...-|+.+.-.-..++-.++.. +.+++++-...+.++..-+-...-.-..+++ .+.++
T Consensus 115 la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~-~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~L 193 (461)
T KOG4199|consen 115 LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLAL-KVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILEL 193 (461)
T ss_pred HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH
Confidence 456678889999999999998877765554332333333222 2345666666666665544322111011122 45566
Q ss_pred HHhhcC-CCChhHHHHHhhhHHHhhccc---c----chhhHHhhhhH-HHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 267 MLQVNK-DTDDDVALEACEFWHSYFEAQ---L----PHENLKEFLPR-LVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 267 ~~~~~~-~~~~~v~~~a~~~l~~~~~~~---~----~~~~~~~~l~~-l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
+++.+. ....++.....+.+..+.... . ..+..+.+... ++..+...++.
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A--------------------- 252 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA--------------------- 252 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc---------------------
Confidence 664433 222334444555555443321 0 11222222221 12222222221
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHH------hhhccchhhhhHHHHHHHHcC-CCCCCchhH-
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS------NVFGDEILPTLMPVIQAKLSA-SGDEAWKDR- 409 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~------~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r- 409 (562)
++.| ..-.....+|..|+ +.+.+ ..=+..+.+++.+ ++ -..|
T Consensus 253 ~~dp------------------------~~L~~l~~tl~~lAVr~E~C~~I~e---~GGl~tl~~~i~d~n~---~~~r~ 302 (461)
T KOG4199|consen 253 GIDP------------------------DSLVSLSTTLKALAVRDEICKSIAE---SGGLDTLLRCIDDSNE---QGNRT 302 (461)
T ss_pred cCCc------------------------cHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHhhhch---hhHHH
Confidence 1000 01111223333333 22111 0113455566665 33 3445
Q ss_pred --HHHHHHHHHHhhcc--hhhh--hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH-HHHH
Q 008533 410 --EAAVLALGAIAEGC--IKGL--YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLM 482 (562)
Q Consensus 410 --~aal~~l~~i~~~~--~~~~--~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~il~ 482 (562)
..++..|..++-.- +..+ ..-++.++...... .++|.|...++-+++-++...|+. ....++ ..-.
T Consensus 303 l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~LR~pdh-----sa~~ie~G~a~ 375 (461)
T KOG4199|consen 303 LAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH--SDDPLVIQEVMAIISILCLRSPDH-----SAKAIEAGAAD 375 (461)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--CCChHHHHHHHHHHHHHHhcCcch-----HHHHHhcchHH
Confidence 44566666666432 1111 12233344433333 356999999999999998865532 233333 2223
Q ss_pred HHHHHhcc-C-CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 483 GLLKRILD-T-NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 483 ~l~~~l~d-~-~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
..++.++- | ...||..||+.|.+++....+.-.+.+..=++.|+..-...
T Consensus 376 ~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~ 427 (461)
T KOG4199|consen 376 LAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN 427 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc
Confidence 33445543 2 46899999999999998877666777777677766655544
No 312
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=82.11 E-value=12 Score=29.87 Aligned_cols=89 Identities=10% Similarity=0.170 Sum_probs=56.3
Q ss_pred HHHHHHHhc--CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc--C
Q 008533 116 IVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--S 191 (562)
Q Consensus 116 ~i~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--~ 191 (562)
....|++.. ......+++..|.+.+++.++.++.-+|.+|..+|..-+..|..... .. ..++..+.++-. |
T Consensus 21 ~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~----~~-~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQ----RN-SAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHH----Hh-HHHHHHHHHcCCCCC
Confidence 334444442 34567899999999999999999999999999999987765532100 01 112222222211 1
Q ss_pred ------CCHHHHHHHHHHHHHHHh
Q 008533 192 ------PHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 192 ------~~~~vr~~al~~l~~~~~ 209 (562)
+...||..|-+++..+..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 234688888887776543
No 313
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=81.70 E-value=5.9 Score=30.47 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=53.6
Q ss_pred hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC
Q 008533 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT 491 (562)
Q Consensus 425 ~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~ 491 (562)
+.+.++.+.++.++...+.+-.+.||.-++..+.-+.+++|+. ....+...+++.++..+.-.
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~----~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE----LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH----hHhhhHHHHHHHHHHHHCCC
Confidence 4568899999999999999999999999999999999998753 24677888898888888654
No 314
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=81.25 E-value=14 Score=32.41 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 392 PVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
+.+.....+++. |..|.+....+..+.. ..+.+.++..+-..+.|++..|+.+..|+|..++...+
T Consensus 108 ~~~~~w~~s~~~--~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENE--WVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcH--HHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 677777777763 6666665544443433 34567788888888889999999999999999998644
No 315
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=81.21 E-value=72 Score=33.09 Aligned_cols=296 Identities=15% Similarity=0.200 Sum_probs=151.2
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH--------hchHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF--------VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~--------~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 247 (562)
..+..++..++..+...+..|+..|+..+..++..+|-++. +++..++..+....++-.+.-.+...++++.
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 35677788888889888999999999999999998875543 3455666777666677677777888888888
Q ss_pred HHhhCccch--hhhHHHHHHH--------HHhhcC----CCCh-hHHHHHhhhHHHhhcccc-----chhhHHhhhhHHH
Q 008533 248 LIEVRPSFL--EPHLRNLFEY--------MLQVNK----DTDD-DVALEACEFWHSYFEAQL-----PHENLKEFLPRLV 307 (562)
Q Consensus 248 l~~~~~~~~--~~~l~~i~~~--------~~~~~~----~~~~-~v~~~a~~~l~~~~~~~~-----~~~~~~~~l~~l~ 307 (562)
++...|..- ...+-+++.+ ...... -.|. .+...|-.....++...+ .++....+...+.
T Consensus 646 vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fyPq~~~~y~~ml~ 725 (1053)
T COG5101 646 VISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFYPQTCSSYCIMLF 725 (1053)
T ss_pred HHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence 776655421 0111111111 111111 1111 122233223333332211 1222223333333
Q ss_pred HHH-HhhcccChhhHhhh-hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh---
Q 008533 308 PVL-LSNMIYADDDESLV-EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--- 382 (562)
Q Consensus 308 ~~l-~~~l~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--- 382 (562)
+.. +.. ++.+. ..++.. ..+...+| ..|..-.+.+..++...
T Consensus 726 ly~avs~------~Is~~vaaeg~i--atktp~vr-------------------------glrtiKkEIlkLv~tyIska 772 (1053)
T COG5101 726 LYFAVSF------DISNSVAAEGLI--ATKTPAVR-------------------------GLRTIKKEILKLVATYISKA 772 (1053)
T ss_pred HHHHHHH------HHHHHHHhcccc--cccCcccc-------------------------chHHHHHHHHHHHHHHHhhh
Confidence 321 111 11110 000000 00000000 12222223333333333
Q ss_pred ------ccchhhhhHHHHH-HHHcCCCCCCchhHHHHHHHHH-HHhhcchhhhh----hhHHHHHHHHhhhc---CCCCh
Q 008533 383 ------GDEILPTLMPVIQ-AKLSASGDEAWKDREAAVLALG-AIAEGCIKGLY----PHLSEIVAFLIPLL---DDKFP 447 (562)
Q Consensus 383 ------~~~~~~~l~~~l~-~~l~~~~~~~~~~r~aal~~l~-~i~~~~~~~~~----~~l~~~~~~l~~~l---~d~~~ 447 (562)
+...++.+.+.+. .+.++ - +..|++++.-++ .+.+....-+. -++..++-.-+..+ .|..|
T Consensus 773 ~dl~~V~n~lv~~l~eaVl~DY~nN-v---PdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~Eyp 848 (1053)
T COG5101 773 RDLKFVQNDLVNMLCEAVLFDYKNN-V---PDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYP 848 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcC-C---CccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhCh
Confidence 2233444444432 33333 2 566777765554 45554432222 22322222111111 15679
Q ss_pred hHHHHHHHHHHHhHHH-HhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 448 LIRSISCWTLSRFSKF-IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
..|.+....+..+-.. ++.++. ...+.+..+++.++=.++..+-.|......++..++++|
T Consensus 849 Ehr~~f~~Ll~~inl~sF~afl~--~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~ 910 (1053)
T COG5101 849 EHRKNFLLLLENINLFSFSAFLS--FPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNC 910 (1053)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHc--CCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHH
Confidence 9999888887776543 222221 346678888888888888777888888888888888887
No 316
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.87 E-value=23 Score=27.89 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=55.7
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh----h--cCCCHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F--QSPHTSLRKL 199 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----l--~~~~~~vr~~ 199 (562)
+....+.+..|.+.+++.+|.+..-||.+|.++++..+..+..++. -..++..++.. . .+.+..||..
T Consensus 32 ~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~------~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 32 NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVA------SNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHH------HhHHHHHHHHhhccccccCCCChHHHHH
Confidence 5677889999999999999999999999999999999887643211 12233333321 1 1246789999
Q ss_pred HHHHHHHHH
Q 008533 200 SLGSVNQFI 208 (562)
Q Consensus 200 al~~l~~~~ 208 (562)
+...+..+.
T Consensus 106 ~~~l~~~w~ 114 (115)
T cd00197 106 AIELVQLWA 114 (115)
T ss_pred HHHHHHHHh
Confidence 988887654
No 317
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=79.70 E-value=49 Score=30.20 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=58.1
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch---h---------------------------hHHhchHHHHHHHhh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---S---------------------------ALFVSMDQYLQGLFL 228 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---~---------------------------~~~~~~~~~l~~l~~ 228 (562)
..+-..++..+.+.++.+|..++|.+..++.... . .+...-..++..++.
T Consensus 42 ~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~ 121 (239)
T PF11935_consen 42 NELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLD 121 (239)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4455557777888899999999999988775311 0 011112346677777
Q ss_pred hccCC--CHHHHHHHHHHHHHHHhhCccchhhhHHHHHH
Q 008533 229 LSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFE 265 (562)
Q Consensus 229 ~~~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~ 265 (562)
.+.++ ++.+...++.+|..++...|.++...++.+..
T Consensus 122 ~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 122 VLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp HHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 66544 36778889999999999999886554444443
No 318
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=78.53 E-value=41 Score=28.65 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHhhcchhhhh------hhH----HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchh
Q 008533 406 WKDREAAVLALGAIAEGCIKGLY------PHL----SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~------~~l----~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (562)
.+.|.-++..+..+.+..+..+. .+. ..+.+.++..+..+++.+-..++.++..+...+... .+.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~-----Lk~ 110 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSH-----LKL 110 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 57778888888887777655443 111 346777777777667888889999999988877653 456
Q ss_pred hHHHHHHHHHH-HhccCC--HHHHHHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLK-RILDTN--KRVQEAACSAFATLEEE 509 (562)
Q Consensus 476 ~~~~il~~l~~-~l~d~~--~~vr~~a~~al~~l~~~ 509 (562)
.++-+++.++. .+..++ ..-|..+..++..++..
T Consensus 111 ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 111 ELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 66777777776 444333 46777888888888864
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=78.26 E-value=90 Score=33.54 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=66.0
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH-HHHHHHhhhc-cCCCHHHHHHHHHHHHHHHhhCccch
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFL 256 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~~ 256 (562)
..++..+-..+.. +..|..++..|+.++..-|..+..... .++..++..+ .|.+..+...++.+|..+.-..+..+
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 5566666666665 468999999999999876654433222 3445554443 36677788889999999999999999
Q ss_pred hhhHHHHHHHHHhh
Q 008533 257 EPHLRNLFEYMLQV 270 (562)
Q Consensus 257 ~~~l~~i~~~~~~~ 270 (562)
.+|++.++.+....
T Consensus 147 ~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 147 GPHLPDLFNIFGRL 160 (668)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999887665
No 320
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=78.17 E-value=92 Score=32.50 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=91.6
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc-hhhHHhchHHHHHHHhhhcc--CCC--H---HHHHHHHHHHHHH
Q 008533 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSN--DPS--A---EVRKLVCAAFNLL 248 (562)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~--~~~--~---~~~~~~~~~L~~l 248 (562)
....++..+...-..++..+|..|+-|+..++... +..+.+.+..+.-......+ ..+ + -.+..+.+.++.=
T Consensus 279 ~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld 358 (661)
T KOG2256|consen 279 LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLD 358 (661)
T ss_pred HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccC
Confidence 34555556666666778899999999998776533 33333322222222222111 011 1 1223333333222
Q ss_pred HhhCccchhhhHHHHHHHHHhhcCCCC-hhH-------HHHHhhhHHHhhc-cccchhhHHhhhhHHHHHHHhhcccChh
Q 008533 249 IEVRPSFLEPHLRNLFEYMLQVNKDTD-DDV-------ALEACEFWHSYFE-AQLPHENLKEFLPRLVPVLLSNMIYADD 319 (562)
Q Consensus 249 ~~~~~~~~~~~l~~i~~~~~~~~~~~~-~~v-------~~~a~~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~l~~~~~ 319 (562)
.+..+..-.-|+.++.-.+-+.+.... +++ -..++++|..+.. .......++|.+..++.+++......+-
T Consensus 359 ~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT 438 (661)
T KOG2256|consen 359 LQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPT 438 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCc
Confidence 223333333455555444444333222 111 2467888888765 3334566777777777777655443321
Q ss_pred hHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--chhhhhHHHHH
Q 008533 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EILPTLMPVIQ 395 (562)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~~l~ 395 (562)
...+..|--+...|..|+...|- .+.|.+++.+.
T Consensus 439 ------------------------------------------~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~ 474 (661)
T KOG2256|consen 439 ------------------------------------------PQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLK 474 (661)
T ss_pred ------------------------------------------ccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHH
Confidence 01235788888888888887765 33444444443
No 321
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=77.89 E-value=38 Score=27.91 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=60.1
Q ss_pred HHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHH-HHHHhcc---CCHHHHHHHHHHHHHH
Q 008533 433 EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMG-LLKRILD---TNKRVQEAACSAFATL 506 (562)
Q Consensus 433 ~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~-l~~~l~d---~~~~vr~~a~~al~~l 506 (562)
..+..|.+.+. ++++.|...|+.++..+.+.++.. .+.+.. ...+.. +.+.+.. .+..|+..+...+..+
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~----fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR----FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 46777778887 478999999999999999988643 122221 355655 5666543 3468999999999999
Q ss_pred HHHccccc-cccHHHHHHHH
Q 008533 507 EEEAAEEL-APRLEIILQHL 525 (562)
Q Consensus 507 ~~~~~~~~-~~~l~~il~~L 525 (562)
...++..- .+++..+.+.|
T Consensus 114 ~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHhCCCccchHHHHHHHHH
Confidence 98875432 24445554444
No 322
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=77.64 E-value=12 Score=40.07 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHh
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
..++..+..++.. ...|..++..|+.++..-+..+...+. .+++.++++|. |.+..+...|+.+|..+.-.++
T Consensus 69 K~~~~~l~~~~~~-----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 69 KHLFDKLNDYFVK-----PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHHHHcC-----chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 4677888888875 457999999999999876544443333 47778888876 8899999999999998888776
Q ss_pred hhcCCCcchhhHHHHHHHHHHHh
Q 008533 466 QDIGHQNGREQFEKVLMGLLKRI 488 (562)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l 488 (562)
. ...+|++.++..+.+.+
T Consensus 144 ~-----~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 S-----SLGPHLPDLFNIFGRLL 161 (668)
T ss_pred c-----hhhHHHHHHHHHHHHHH
Confidence 4 36889999999988876
No 323
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=77.06 E-value=75 Score=30.92 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHH
Q 008533 447 PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLM 526 (562)
Q Consensus 447 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~ 526 (562)
..+......+++.+..+-..+ .+..-+.++..+...+.+. ....+..+|.-.+-..+..+.++++.++..+.
T Consensus 211 ~D~~~~~~~~Ls~LisYh~~~-----~k~~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs 282 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHSHF-----SKQEQDEIVRALESGLGSK---TAKPCIHALTICCYEMPDSMKKLLPSILLKLS 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CHhHHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467777788888888775543 2344568888888887752 23345566665566668888899999988877
Q ss_pred HHHhhhhhhHHH-HHHHHHHHHHH
Q 008533 527 MAFGKYQRRNLR-IVYDAIGTLAD 549 (562)
Q Consensus 527 ~~l~~~~~~~~~-~~~~~l~~l~~ 549 (562)
+...... +. -++|-++.+++
T Consensus 283 ~i~tt~~---~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 283 KISTTPN---MAIHILEFLSSLSR 303 (356)
T ss_pred hhccchh---hHHHHHHHHHHHhh
Confidence 6665432 22 46666665554
No 324
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=76.24 E-value=4.3 Score=22.29 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 008533 449 IRSISCWTLSRFSK 462 (562)
Q Consensus 449 vr~~a~~~l~~l~~ 462 (562)
||..|+++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998875
No 325
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.52 E-value=9.5 Score=35.43 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=48.0
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
.+...+.+.+|.||.+|+.-+..+... + .+....|-...++.+.+.+++..+ ..-|+.++.++....
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~----~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-G----LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-c----hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 456778899999999998776666543 1 123455667788888888887655 455778888887654
No 326
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.08 E-value=70 Score=29.61 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=98.6
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccC-CCCCcchhHhhHHHHHHhhcCCC-----HHHHHHH
Q 008533 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV-PGLAECPINIFLPRLLQFFQSPH-----TSLRKLS 200 (562)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~l~~~~-----~~vr~~a 200 (562)
+.|+.+-+.+.+.+.++. ..+.++.+|..+.......+-... .++ --.+-..+|.++..+.+++ ..++ .+
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rl-l~~~la~LP~ll~~~d~~~~i~~~~~~~-~~ 135 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRL-LFLLLALLPRLLHAFDDPNPIQPDQECI-EI 135 (262)
T ss_pred CCchhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccH-HHHHHHHHHHHHHHhcccccccccHHHH-HH
Confidence 677899999999998764 455678888888776544332111 111 1234456888888888776 3344 33
Q ss_pred HHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHH
Q 008533 201 LGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVAL 280 (562)
Q Consensus 201 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~ 280 (562)
...+..++...+ .+.+..++....+..-....+....++..|.. . ++..|--+++.+++..+....+.++.
T Consensus 136 A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~---~---f~P~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 136 AEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVVSYLRE---A---FFPDHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---H---hCchhHHHHHHHHHHHHhCCcHHHHH
Confidence 355555554211 22344444444332211222333333333322 2 22233446777777777777788999
Q ss_pred HHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcc
Q 008533 281 EACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMI 315 (562)
Q Consensus 281 ~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~ 315 (562)
.+++++..+...-... +++...++..+++.++
T Consensus 207 ~~L~iL~~ll~~~d~~---~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMR---SPHGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHhccccCC---CCcchHHHHHHHHHhC
Confidence 9999998887652111 3355667766666553
No 327
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.93 E-value=1.7e+02 Score=33.81 Aligned_cols=118 Identities=22% Similarity=0.164 Sum_probs=74.9
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhh--hHHHHHHHHhhhcC-------CC--ChhH----HHHH
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLD-------DK--FPLI----RSIS 453 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~--~l~~~~~~l~~~l~-------d~--~~~v----r~~a 453 (562)
.++..+.++..++- ..+|.+|+..|-++....+..+.+ .-.-+...+++.|. ++ ...+ -...
T Consensus 997 ~ll~~L~~~~~dsr---~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 997 MLLVHLADLCEDSR---AEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred HHHHHHHHHhccch---HHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence 44555666666655 789999999999988755443433 22224455556665 11 1223 2457
Q ss_pred HHHHHHhHHHHhhhc----CCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 454 CWTLSRFSKFIVQDI----GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 454 ~~~l~~l~~~~~~~~----~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
+.+|+.+++.+++.. .-......++.++..+-+...+.++.+..+|..++..+...
T Consensus 1074 ~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 778888888776531 11112344566677777777788999999999999988754
No 328
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=74.17 E-value=89 Score=30.33 Aligned_cols=193 Identities=14% Similarity=0.051 Sum_probs=104.5
Q ss_pred hHHHHHHHHhhhhh-CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccc
Q 008533 90 NQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (562)
Q Consensus 90 ~~~~i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 168 (562)
.-..|.+.+...+. +.++.....+..+++.=......+.=+.++..+.+.+++..+.+|..-+.+++.++...+..
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~--- 95 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS--- 95 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc---
Confidence 34456666666664 56777776666666655554433444788999999999998889999999999988711100
Q ss_pred cCCCCCcchhHhhHHHHHHhhc----CCCHHHH----HHHHHHHHHHHhhchhhHHh-c-h---------HH--HHHHHh
Q 008533 169 DVPGLAECPINIFLPRLLQFFQ----SPHTSLR----KLSLGSVNQFIMLMPSALFV-S-M---------DQ--YLQGLF 227 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~----~~~~~vr----~~al~~l~~~~~~~~~~~~~-~-~---------~~--~l~~l~ 227 (562)
. .......++|.+.+.++ ++..... ..|.-.+. ......+.... . . +. +-+.++
T Consensus 96 ~----~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvy 170 (339)
T PF12074_consen 96 D----SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVY 170 (339)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHH
Confidence 0 01245667777766664 3322211 11111111 00000000000 0 0 00 012333
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCccchhhhH-HHHHHHHHhhcCCC--ChhHHHHHhhhHHHhhcc
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL-RNLFEYMLQVNKDT--DDDVALEACEFWHSYFEA 292 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l-~~i~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~ 292 (562)
+.+ .+++.....++++..+.........+.. ..+.+.++..+-+. ..++|..|.+.+..+...
T Consensus 171 skl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 171 SKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 322 2344556677777776665544433322 33444444444444 778999999999887654
No 329
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.11 E-value=16 Score=31.85 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=64.5
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc---
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--- 510 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~--- 510 (562)
.+|.++..|.+-+..-|.-|-.-+..+....+ ...-+.+++++..+-..|...+.+|...+..+|..+....
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-----~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGG-----EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-----cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 45666666665444444444444555554433 2456778888988888888888899999999999887654
Q ss_pred cccccccHHHHHHHHHHHHh
Q 008533 511 AEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 511 ~~~~~~~l~~il~~L~~~l~ 530 (562)
+..+.||+-+++..+-..-+
T Consensus 190 G~aLVPfYRQlLp~~n~~k~ 209 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTFKN 209 (262)
T ss_pred chhhhhHHHHhhhhhhhhcc
Confidence 78999999998887544433
No 330
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=73.86 E-value=25 Score=28.03 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred chhhhhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHH
Q 008533 385 EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 385 ~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
.+++.++|++...++ +.. ...|.++++.++.++...+=. .+.+..++..+......... ...++.++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~---~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSS---PDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 356789999999998 555 789999999999999865310 23455566666666555444 45666777777643
No 331
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=72.96 E-value=42 Score=29.40 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCC--hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
++|..|..++..+....... .++++. .+.+...+..++ +..-..+.+++.++...+. ...|...++..+
T Consensus 22 rvR~~A~~~l~~ll~~~~~~-~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~-------~~~y~~~ll~Gl 92 (193)
T PF12612_consen 22 RVREVAGKCLQRLLHSQDPT-IPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLD-------LPEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHhcCCCcc-ccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhc-------cHHHHHHHHhHH
Confidence 88999999999888433111 112221 122222222211 1112223344455554432 367888888888
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHH
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQ--RRNLRIVYDAIGTLADA 550 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~--~~~~~~~~~~l~~l~~~ 550 (562)
+.....-...+...|..+|..++... +.-...+..++..|+..+.... ++..--+++++..+.+.
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~-~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLREL-SDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 88887766677777888888777643 2223345666666666666543 22222455555554443
No 332
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=70.26 E-value=73 Score=32.83 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=66.0
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchh--hHHhch
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVSM 219 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~ 219 (562)
+-++..|.-++..|+..+...|..+.. ...+...--+|.|.+..||....+++..++...|. .+...+
T Consensus 286 Dv~d~IRv~c~~~L~dwi~lvP~yf~k----------~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 286 DVDDVIRVLCSMSLRDWIGLVPDYFRK----------ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred chhHHHHHHHHHHHHHHHhcchHHHHh----------hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345677888888888888888776542 11333344467788899999999999999987763 233344
Q ss_pred HHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhh
Q 008533 220 DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 220 ~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~ 251 (562)
+-+...++..+. +.+- +|....+.++.+-..
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 444555555443 3344 888888888776543
No 333
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=70.16 E-value=18 Score=25.76 Aligned_cols=53 Identities=6% Similarity=0.192 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcchhhHH--HHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 008533 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~ 509 (562)
.++|+|++|.++..-. ..++++ .+++.+++... .+...+|-.+..+|+-+...
T Consensus 4 lKaaLWaighIgss~~-------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5689999999987532 234443 57888887765 45789999999999987654
No 334
>PF14961 BROMI: Broad-minded protein
Probab=69.58 E-value=69 Score=36.10 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=56.2
Q ss_pred HHhhhhh-CCchHHHHHHHHHHHHHHHhc--CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcc
Q 008533 97 ELLPCLG-AADRHIRSTVGTIVSVVVQLG--GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 97 ~ll~~l~-~~~~~vr~~~~~~i~~i~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~ 166 (562)
.+++-+. +....||..|.+.+..+-..+ ..+.|+.+-..|...+.|+|+.....++......+...+..+
T Consensus 165 ~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 165 LIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 3444444 346789999999888776665 458999999999999999999999999999988888766544
No 335
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=68.83 E-value=11 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=26.3
Q ss_pred hhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc
Q 008533 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~ 124 (562)
...+++|+.+++.|...++..|..+..+|+.+.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 356789999999998877888888889999888765
No 336
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=68.29 E-value=72 Score=26.84 Aligned_cols=98 Identities=9% Similarity=0.117 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHhhCccchhhhHHH-HHHHHHhhc
Q 008533 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN--DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRN-LFEYMLQVN 271 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~-i~~~~~~~~ 271 (562)
++...++++|..+.+..--.....-+.++..+....+ ..+..+...++..|..++.+.+......-++ -++-++..+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 5566677777776652100111111233444444332 2267888899999999988766543322222 234444556
Q ss_pred CCCChhHHHHHhhhHHHhhcc
Q 008533 272 KDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 272 ~~~~~~v~~~a~~~l~~~~~~ 292 (562)
+..++++...|+-.+.++...
T Consensus 112 q~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhc
Confidence 668888999999998887544
No 337
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=67.73 E-value=25 Score=31.08 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=53.9
Q ss_pred HHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHH
Q 008533 374 ALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (562)
Q Consensus 374 ~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~ 452 (562)
.++.++..+.+ ...+.+++......++.+ -|..|.+...++...-+. ++...+++.+-..+.|+++.|+.+
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~--~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KA 173 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDN--RWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKA 173 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccch--HHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHH
Confidence 35556655544 445666666643333333 166565555555443332 233467888888899999999999
Q ss_pred HHHHHHHhHHHH
Q 008533 453 SCWTLSRFSKFI 464 (562)
Q Consensus 453 a~~~l~~l~~~~ 464 (562)
.-|+|.+++++.
T Consensus 174 igWaLrq~~k~~ 185 (222)
T COG4912 174 IGWALRQIGKHS 185 (222)
T ss_pred HHHHHHHHHhhc
Confidence 999999999843
No 338
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=67.54 E-value=9.2 Score=21.41 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHhH
Q 008533 447 PLIRSISCWTLSRFS 461 (562)
Q Consensus 447 ~~vr~~a~~~l~~l~ 461 (562)
+.||..|+++||++.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 368999999999884
No 339
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=67.45 E-value=1.9e+02 Score=31.43 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=61.6
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchh--hHHhch
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS--ALFVSM 219 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~--~~~~~~ 219 (562)
........-++.++..++..+.+... ...+.++-.+..++.+.+.+++..++.++..++....+ ...-..
T Consensus 67 ~~r~~~v~Iamea~~kLL~~C~eq~n--------~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~y 138 (819)
T KOG1877|consen 67 RERFGSVKIAMEAYDKLLQACKEQIN--------LFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNY 138 (819)
T ss_pred hccCcchhhHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhh
Confidence 33444555678888888877776542 24567777788888888889999999999988864321 122224
Q ss_pred HHHHHHHhhhccC-CC----HHHHHHHHHHHHHHH
Q 008533 220 DQYLQGLFLLSND-PS----AEVRKLVCAAFNLLI 249 (562)
Q Consensus 220 ~~~l~~l~~~~~~-~~----~~~~~~~~~~L~~l~ 249 (562)
+.++..+.++... ++ ..+|.+.+++|..++
T Consensus 139 d~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v 173 (819)
T KOG1877|consen 139 DFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVV 173 (819)
T ss_pred HHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHH
Confidence 4556665554432 22 234555555554443
No 340
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.48 E-value=26 Score=26.86 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcC--CCChhHHHHHHHHHHHhHHHHh
Q 008533 409 REAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLD--DKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 409 r~aal~~l~~i~~~~~~~~~~~l~--~~~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
|...+..++.++...... ...+. .-+|.++.... +.+|.+|..|++++-++++..+
T Consensus 3 K~~lvrlianl~~~~~~~-Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEV-QDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHH-HHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 445566777777666421 22222 13677777654 6789999999999999998654
No 341
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=66.38 E-value=2.7e+02 Score=32.71 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHhhcchhhhhh--hHHHHHHHHhhhcCC----CChhHHHHHHHHHHHhHHHHhhhcCCCcchhh----
Q 008533 407 KDREAAVLALGAIAEGCIKGLYP--HLSEIVAFLIPLLDD----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ---- 476 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~--~l~~~~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~---- 476 (562)
..-.+.+.+|..++..|.+.-.. .++..+.+++..|.. ..-.+...|--.|-+++.++.. .++|
T Consensus 453 sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt------~E~yRQIL 526 (2195)
T KOG2122|consen 453 STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT------CEDYRQIL 526 (2195)
T ss_pred chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc------cchHHHHH
Confidence 34566677777777666432221 234455666666653 3345666665666666665542 2333
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 477 -FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 477 -~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
-..++..|++.|+..+-.|-.++|.+|-+|...+
T Consensus 527 R~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~ 561 (2195)
T KOG2122|consen 527 RRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS 561 (2195)
T ss_pred HHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC
Confidence 2467888899999888778889999999988655
No 342
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=64.44 E-value=41 Score=27.67 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=25.9
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
..+...+..++.+++.+|++.|++|+..|=
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 556677889999999999999999999864
No 343
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.04 E-value=27 Score=35.18 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAV 551 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~ 551 (562)
.-..++..|.+.+++.+++|+..|...|..++++|+..|.-. -..+++.++...... ..+++..++..|-+=..+.
T Consensus 35 ~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 35 GPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred CcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 344888889999998889999999999999999998766533 256666666666554 3456668888887777776
Q ss_pred hh
Q 008533 552 GF 553 (562)
Q Consensus 552 ~~ 553 (562)
+.
T Consensus 115 ~~ 116 (470)
T KOG1087|consen 115 CG 116 (470)
T ss_pred cC
Confidence 65
No 344
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=63.71 E-value=1.5e+02 Score=28.92 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc
Q 008533 63 KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS 142 (562)
Q Consensus 63 ~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~ 142 (562)
.....+++|+.++-+++++ ++.+..+.. +.-+.++.+.+-.||+++..-+..+++.+ ..+.+.+.+.++++.
T Consensus 36 ~~~k~k~lasq~ip~~fk~-fp~la~~a~----da~~d~~ed~d~~ir~qaik~lp~fc~~d---~~~rv~d~l~qLLnk 107 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH-FPSLADEAI----DAQLDLCEDDDVGIRRQAIKGLPLFCKGD---ALSRVNDVLVQLLNK 107 (460)
T ss_pred cchHHHHHHHHHHHHHHhh-CchhhhHHH----HhhhccccccchhhHHHHHhccchhccCc---hhhhhHHHHHHHHHH
Confidence 3456677888877777665 344443322 34456777889999999999988888764 334444444444432
Q ss_pred ------------CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 143 ------------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 143 ------------~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
.+..+|+.++.-+..=+..++..+.. +..-..++..+.+.|.|...+--..-++.+.++-..
T Consensus 108 ~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~------kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~ 181 (460)
T KOG2213|consen 108 ASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLT------KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSL 181 (460)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhh------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 23455555555444333333332211 123344566666677766554333333444433221
Q ss_pred c---h-hhHHhchHHHHHHHhhh--ccCCCHHHHHHHHHHHHHHHhh----Cc-cchhhhHH-HHHHHHHhhcCCC-Chh
Q 008533 211 M---P-SALFVSMDQYLQGLFLL--SNDPSAEVRKLVCAAFNLLIEV----RP-SFLEPHLR-NLFEYMLQVNKDT-DDD 277 (562)
Q Consensus 211 ~---~-~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~L~~l~~~----~~-~~~~~~l~-~i~~~~~~~~~~~-~~~ 277 (562)
- + ..+.. +......+-.+ ..-.|.+.....+.|+..-+-. .+ ..|-.|+. .++|. .-+. .++
T Consensus 182 ~~k~~~a~lqe-La~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~----~fdkl~e~ 256 (460)
T KOG2213|consen 182 QTKAGEARLQE-LAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPH----HFDKLTEE 256 (460)
T ss_pred cCCCCHHHHHH-HHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhccc----ccccchHH
Confidence 1 1 11111 11222222222 3335566667777776554332 22 12223332 33332 1121 133
Q ss_pred HHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccCh
Q 008533 278 VALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYAD 318 (562)
Q Consensus 278 v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~ 318 (562)
....-+..+..+.... ..+..++.++.++..+..+|...+
T Consensus 257 rkL~lLK~lAEMss~t-taq~a~q~Lpsi~elLk~yMpa~k 296 (460)
T KOG2213|consen 257 RKLDLLKALAEMSSYT-TAQAARQMLPSIVELLKEYMPAPK 296 (460)
T ss_pred HHHHHHHHHHHhCccc-hHHHHHHHHHHHHHHHHHhcccCC
Confidence 3333334444443331 345677888899999888886553
No 345
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.18 E-value=54 Score=33.12 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=74.1
Q ss_pred hhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH
Q 008533 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (562)
Q Consensus 100 ~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~ 179 (562)
..|.++++.+--.+|..|. .+ ...-++.+-.|.+.+++.++.+...||.+|..+++.+++.|... ..-.
T Consensus 12 ~~l~~pDWa~NleIcD~IN----~~-~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~------Va~k 80 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLIN----ST-EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQ------VASK 80 (470)
T ss_pred ccccCccHHHHHHHHHHHh----cC-ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHH------HHHH
Confidence 3455667665544444332 11 23335889999999999888999999999999999999977532 1336
Q ss_pred hhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhch
Q 008533 180 IFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 180 ~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~ 212 (562)
++++..+...... +..||..++..+..|-...+
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 6777778877664 66899999999998877554
No 346
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=63.15 E-value=9.8 Score=24.19 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc
Q 008533 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~ 124 (562)
..+++|+-+++.|...+.. |.....+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4578999999999876555 888888999888765
No 347
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=62.82 E-value=1.3e+02 Score=27.82 Aligned_cols=160 Identities=15% Similarity=0.160 Sum_probs=90.9
Q ss_pred chhcHhhhHHHHHHHHHhhhc------c-----chhhhhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcch----hh
Q 008533 363 NVWNLRKCSAAALDVLSNVFG------D-----EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCI----KG 426 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~------~-----~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~----~~ 426 (562)
..|..-+.+...+..++...+ . +.+..+..++...|. -.+ .-.-+.+.-+|..+++.+. ..
T Consensus 59 ~~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rH---rGAfe~~~~~f~~lc~~l~~~~~~~ 135 (255)
T PF10350_consen 59 CCWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRH---RGAFESVYPGFTALCRRLWSSNNPE 135 (255)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHhcCCCch
Confidence 357666777888888885431 1 233344455444433 233 4445556666666666543 22
Q ss_pred hhhhHHHHHHHHhhhcCCC--C--hhHHHHHH--HHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCH-------
Q 008533 427 LYPHLSEIVAFLIPLLDDK--F--PLIRSISC--WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNK------- 493 (562)
Q Consensus 427 ~~~~l~~~~~~l~~~l~d~--~--~~vr~~a~--~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~------- 493 (562)
+......-+..++..+.++ . ...|..|= .++..+...- +......++..|..|+...+.+..
T Consensus 136 l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae-----~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~ 210 (255)
T PF10350_consen 136 LSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAE-----PSNSRPLLHRTMKSLLEIAKSPSTQHEDEKS 210 (255)
T ss_pred HHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcC-----CCcchhHHHHHHHHHHHHhcCCccccccccc
Confidence 3232333445555555543 1 24555442 1222222211 112237788899999888776532
Q ss_pred -HHHHHHHHHHHHHHHHc--cccccccHHHHHHHHHHHHh
Q 008533 494 -RVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 494 -~vr~~a~~al~~l~~~~--~~~~~~~l~~il~~L~~~l~ 530 (562)
.-|.+|..+|..++... .+.+.+|+++.+..-++.+.
T Consensus 211 d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 211 DLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred chHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 47889999999998765 67888888887765555444
No 348
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=60.63 E-value=2.6e+02 Score=30.54 Aligned_cols=132 Identities=9% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc---chh---h
Q 008533 185 LLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS---FLE---P 258 (562)
Q Consensus 185 l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~---~~~---~ 258 (562)
..+-+......--+-|++++..++..+.+.+..+...++..+..++.+.+++.+..++.++..++....+ ... .
T Consensus 61 ~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~ 140 (819)
T KOG1877|consen 61 CYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDF 140 (819)
T ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHH
Confidence 3333443333334566777777776665444333445566666666666778888899999998865432 221 2
Q ss_pred hHHHHHHHHHhh-cCCCChhHHHHHhhhHHHhhcc---ccch-hhHH-hhhhHHHHHHHhhccc
Q 008533 259 HLRNLFEYMLQV-NKDTDDDVALEACEFWHSYFEA---QLPH-ENLK-EFLPRLVPVLLSNMIY 316 (562)
Q Consensus 259 ~l~~i~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~---~~~~-~~~~-~~l~~l~~~l~~~l~~ 316 (562)
++..+.+++... ..+.-..+|...+..+..+... .... .... .+++.++|.+.-.++.
T Consensus 141 Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~ 204 (819)
T KOG1877|consen 141 FISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQS 204 (819)
T ss_pred HHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcc
Confidence 233444444433 1111133455555544443221 1111 1111 2467777777655543
No 349
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=59.14 E-value=1e+02 Score=25.42 Aligned_cols=110 Identities=10% Similarity=0.187 Sum_probs=68.0
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHH-Hh
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAF-LI 439 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~-l~ 439 (562)
.|.. ..+..+.+... ..--...+..+...+++ .+ .++..-|+..+-.++.+|+..+...+ ..++.. +.
T Consensus 18 dw~~---ileicD~In~~--~~~~k~a~ralkkRl~~~~n---~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 18 DWGL---NMEICDIINET--EDGPKDAVRALKKRLNGNKN---HKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred CHHH---HHHHHHHHhCC--CCcHHHHHHHHHHHHccCCC---HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHH
Confidence 3655 34444444332 22234677788888874 45 77778789999999999986553222 234443 44
Q ss_pred hhcC---CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 440 PLLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 440 ~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
..+. +.+..|+..++..+..++..+... ..-.++..++..|.
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~----~~l~~i~~~y~~L~ 134 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWADAFRGS----PDLTGVVEVYEELK 134 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHHHHhCCC----ccchHHHHHHHHHH
Confidence 4444 245689999999999999887531 12344555555543
No 350
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=58.75 E-value=2.4e+02 Score=29.60 Aligned_cols=218 Identities=11% Similarity=0.132 Sum_probs=111.6
Q ss_pred cCChhhHHHHHHHHhhhhhCCch--------HHH----HHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHH
Q 008533 85 SMSPSNQQYIKSELLPCLGAADR--------HIR----STVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAM 152 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~--------~vr----~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al 152 (562)
.++++.-..|-+..++.+...++ .+| +..|+++|.+.+..+..--..++..|.+..++.+ .. +.-+
T Consensus 27 ~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~-~~-~~~~ 104 (552)
T PF14222_consen 27 SLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSN-DA-ESKI 104 (552)
T ss_pred CCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCC-ch-HHHH
Confidence 46666666676677766653222 233 4577888888876554455667777777765322 12 1222
Q ss_pred HHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchh---------hHHhchHH
Q 008533 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---------ALFVSMDQ 221 (562)
Q Consensus 153 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---------~~~~~~~~ 221 (562)
..+-.-.+.+.-...+. +.+ ...-+++..+-+++.+. +.+++.+-++.+..+..-+.. ...+.+..
T Consensus 105 ~~li~GMr~lrlk~~p~--e~~-e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~ 181 (552)
T PF14222_consen 105 ELLIMGMRYLRLKMYPE--EAF-EESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVET 181 (552)
T ss_pred HHHHhhcceeeecCCCH--HHH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHH
Confidence 22222222221111110 001 12345666666666554 566999999888887653221 22233334
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHH-HHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHH-----Hh-hccc
Q 008533 222 YLQGLFLLSNDPSAEVRKLVCAAFNL-LIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWH-----SY-FEAQ 293 (562)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~L~~-l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~-----~~-~~~~ 293 (562)
+.+.+.+.... +.--..++-.... ++-..+++|..+.. .+++.+...+++. ..|..+++++. .+ -...
T Consensus 182 i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~ 257 (552)
T PF14222_consen 182 IYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCP 257 (552)
T ss_pred HHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccC
Confidence 44444444332 2222234444444 34445677777777 5887777767766 45666666543 34 2222
Q ss_pred cchhhHHhhhhHHHHHHH
Q 008533 294 LPHENLKEFLPRLVPVLL 311 (562)
Q Consensus 294 ~~~~~~~~~l~~l~~~l~ 311 (562)
...+.....++.++..++
T Consensus 258 Es~n~T~krL~~i~~~lf 275 (552)
T PF14222_consen 258 ESLNNTTKRLDSIFKLLF 275 (552)
T ss_pred CCchHHHHHHHHHHHHHc
Confidence 223333344555555554
No 351
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=57.88 E-value=1.3e+02 Score=26.24 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=57.0
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccc
Q 008533 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA 515 (562)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~ 515 (562)
+.+..-..++++.+|.+++.++..+... ..+.+.++..+-..+.|++..||.+..++|..+....++.+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~ 177 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK----------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVI 177 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 5666777899999999997766554432 346778888888888888899999999999998887655555
Q ss_pred ccHHHH
Q 008533 516 PRLEII 521 (562)
Q Consensus 516 ~~l~~i 521 (562)
.|+...
T Consensus 178 ~~l~~~ 183 (197)
T cd06561 178 AFLEKN 183 (197)
T ss_pred HHHHHH
Confidence 554443
No 352
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=57.42 E-value=51 Score=30.18 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
-+.|++...-++.. --..|-+++..+|++.......+-.|+- +++|..+..+...+...|..|...+.++...-..
T Consensus 95 yLyPfL~tt~k~r~--~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~G 172 (262)
T PF04078_consen 95 YLYPFLNTTSKTRP--FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVG 172 (262)
T ss_dssp GGHHHHH----SHH--HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHH
T ss_pred hehhhhhccccccc--cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhH
Confidence 45566644333211 1357788888888888766555555553 4788888888777778888888888887642111
Q ss_pred ---hcCCCcchhhHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Q 008533 467 ---DIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 467 ---~~~~~~~~~~~~~il~~l~~~l-~d~~~~vr~~a~~al~~l~~~ 509 (562)
.......-..+..++..++..+ .++++++-.....+..++.++
T Consensus 173 L~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 173 LNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 0011011112334444444433 456777777777777777765
No 353
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=56.79 E-value=44 Score=33.82 Aligned_cols=134 Identities=12% Similarity=0.019 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHhhhc----cchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcC
Q 008533 369 KCSAAALDVLSNVFG----DEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLD 443 (562)
Q Consensus 369 ~~a~~~l~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~ 443 (562)
.++..+|..++.... +-.-..+.+.+.+.+++++ -+....+...+....-....--..++ ..++..+.+.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe---imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE---IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc---ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 345566666665431 1112356677788888877 56555555444433322221112233 346677777777
Q ss_pred CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
.++..+|....|++-.+.-...+. ...+..-.--++.++...+|++..|+......|.+|.-
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~---ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKN---EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcch---hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 777899999999998777554321 01122222337778888899999999999999999875
No 354
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=56.62 E-value=54 Score=25.97 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=57.3
Q ss_pred hhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh
Q 008533 99 LPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (562)
Q Consensus 99 l~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~ 178 (562)
++.|..+...|++...-++...- .-++++..+.+.+....+..+...+.++..++........+. ..
T Consensus 6 L~~L~~s~~~I~~lt~~~~~~~~------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~-------f~ 72 (121)
T smart00582 6 LESLNNSQESIQTLTKWAIEHAS------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSE-------FG 72 (121)
T ss_pred HHhccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHH-------HH
Confidence 44455555666665555554433 224677777777776666788888888888888765432111 12
Q ss_pred HhhHHHHHH----hhcCCCHHHHHHHHHHHHHHHh
Q 008533 179 NIFLPRLLQ----FFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 179 ~~il~~l~~----~l~~~~~~vr~~al~~l~~~~~ 209 (562)
..+.|.+.. .....++++|....+++..+-.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~ 107 (121)
T smart00582 73 DELGPVFQDALRDVLGAANDETKKKIRRLLNIWEE 107 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 222232222 2223346788888888887765
No 355
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=56.38 E-value=2.5e+02 Score=29.19 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=56.7
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHH
Q 008533 228 LLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (562)
Q Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~ 307 (562)
....+-++.+|..+...|...++..|+.+.... .+.+.-..+.|.+..+|......+..+++.......++.+++..-
T Consensus 282 sRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 282 SRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred hhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 445567788999999999998888888765433 344444567888899999999999888887433344555554444
Q ss_pred HHHH
Q 008533 308 PVLL 311 (562)
Q Consensus 308 ~~l~ 311 (562)
..++
T Consensus 360 ~rIL 363 (740)
T COG5537 360 DRIL 363 (740)
T ss_pred HHHH
Confidence 4443
No 356
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=55.94 E-value=1.4e+02 Score=26.11 Aligned_cols=108 Identities=12% Similarity=0.058 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--CchHHHHHHHHHHhccCChh--HHhHHHHHHHHHhhcchhcc
Q 008533 91 QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGWLELLQALVTCLDSNDIN--HMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 91 ~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~w~~ll~~l~~~l~~~~~~--~~~~al~~l~~i~~~~~~~~ 166 (562)
...+-..+++...+.-..||..|+.++..+.....+ ...| -.+.|...+..+... ....+-.++..++.-...
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~-- 81 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL-- 81 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhcc--
Confidence 344445555556677889999999999999944322 1222 223444444332210 011122222222221111
Q ss_pred cccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 167 DSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
+.+...++..++....+.+..+.+.+..+|..++.
T Consensus 82 --------~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 82 --------PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred --------HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 01234445555555555666777777777777765
No 357
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.62 E-value=4.3e+02 Score=31.27 Aligned_cols=231 Identities=14% Similarity=0.123 Sum_probs=114.9
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhh----CCchHHHHHHHHHHHHHHHh
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG----AADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~----~~~~~vr~~~~~~i~~i~~~ 123 (562)
+|+...-.+... +..+.+|.+........++..|..+ ++.+. +.+..+-...-..+.++...
T Consensus 1036 ~fl~Pfe~im~~--s~s~~Irelv~rC~~~nikSGWk~i------------f~i~~~aA~~~~~~iv~~~fe~v~~i~~~ 1101 (1514)
T KOG0929|consen 1036 DFLRPFEHIMKR--SSSAEIRELVVRCISSNIKSGWKNI------------FKIFTTAASDSSKNIVELAFETVSKILQE 1101 (1514)
T ss_pred hhcCcchHHhhc--cCcchhHHHHHhhhhhhhhhhhhHH------------HHHHHHhhccchhhHHHHhHHHHHHHHHH
Confidence 444444455554 7788999988888888888888752 22221 23334444444444444433
Q ss_pred cCc-------CchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhcchhc-----ccccCCCCCcchhHhhHHHHHH---
Q 008533 124 GGI-------AGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQV-----LDSDVPGLAECPINIFLPRLLQ--- 187 (562)
Q Consensus 124 ~~~-------~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~-----~~~~~~~~~~~~~~~il~~l~~--- 187 (562)
.+. ....+.++.+.+...+ ..++.-..++..+......+.+. +.....+..+......+|.+..
T Consensus 1102 ~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~ 1181 (1514)
T KOG0929|consen 1102 LFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSK 1181 (1514)
T ss_pred hhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhH
Confidence 222 2233444444444432 22333333333333322222221 1100000001122333444332
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhc---c-CC-----CHHH---HHHHHHHHHHHHhhCcc
Q 008533 188 FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLS---N-DP-----SAEV---RKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 188 ~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~---~-~~-----~~~~---~~~~~~~L~~l~~~~~~ 254 (562)
...+...++|..+++.+..+....++.|...+ ..+...++... + +. ++-. -..++..++.+...+.+
T Consensus 1182 i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~ 1261 (1514)
T KOG0929|consen 1182 IINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFK 1261 (1514)
T ss_pred HhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33356789999999999988876655544321 22233333221 1 11 1122 23344555555556666
Q ss_pred chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.+...++.++..+..+...++..+......++..+...
T Consensus 1262 ~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~ 1299 (1514)
T KOG0929|consen 1262 QLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSS 1299 (1514)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHh
Confidence 66666777777777777777766666666666655443
No 358
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=53.17 E-value=1.3e+02 Score=24.75 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-ccc-
Q 008533 436 AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA-AEE- 513 (562)
Q Consensus 436 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~-~~~- 513 (562)
..++..|+-+...+..+|..++-. .+.-+.++..++..+.+++-..|....+.+..+++.+ ...
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--------------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~ 76 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--------------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKK 76 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccc
Confidence 345556666667777777666544 2233456666666677777888999999999999887 333
Q ss_pred -ccccHHHHHHHHHHHHhhh---h-h--hHHHHHHHHHHHH
Q 008533 514 -LAPRLEIILQHLMMAFGKY---Q-R--RNLRIVYDAIGTL 547 (562)
Q Consensus 514 -~~~~l~~il~~L~~~l~~~---~-~--~~~~~~~~~l~~l 547 (562)
-.+|...+-..|.+++... + . .++..+...|..+
T Consensus 77 ~~~~Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~ 117 (139)
T PF12243_consen 77 YNYPYVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNW 117 (139)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHH
Confidence 6778777766666666542 1 1 3455555555444
No 359
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=52.96 E-value=2.9e+02 Score=28.89 Aligned_cols=80 Identities=10% Similarity=0.106 Sum_probs=52.8
Q ss_pred ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcc-hhhhh-hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGC-IKGLY-PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~-~~~~~-~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
..+.+..++-.+...+.+... -..|-+.+..++.+++-. ++... +..+.+....--.|.|.++.++.-|+.+.|++
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp--~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPP--DHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCC--ccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 344555666666666654321 347888888888887644 23332 34444444444557899999999999999999
Q ss_pred HHHH
Q 008533 461 SKFI 464 (562)
Q Consensus 461 ~~~~ 464 (562)
++..
T Consensus 551 Ae~T 554 (559)
T PF14868_consen 551 AERT 554 (559)
T ss_pred hccC
Confidence 9864
No 360
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=51.92 E-value=23 Score=35.74 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhcch---hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHH
Q 008533 409 REAAVLALGAIAEGCI---KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGL 484 (562)
Q Consensus 409 r~aal~~l~~i~~~~~---~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l 484 (562)
-.|++.+|-++..... ..+.. ..+...++..|.+|+.+|...+.-.+.++..-+.+ -...++ ..++..+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d--~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-----L~~~fL~~~iIdvl 478 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLD--YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSN-----LGAGFLEKSIIDVL 478 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccc--cchHHHHHHHhcCccceeeccchhhhhheeeeccc-----hHHHHHHhhHHHHH
Confidence 3455555555554331 11111 12666778888888888887776555554433222 122333 4667777
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHc--cccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~ 546 (562)
++++...+..+|..+.|.+.++.-.| ...+.+....=+..+++..+++...++...+..+-.
T Consensus 479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrN 542 (743)
T COG5369 479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRN 542 (743)
T ss_pred HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHh
Confidence 77776667789999999999999888 346777777777777888877766655555554443
No 361
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=3.2e+02 Score=28.92 Aligned_cols=63 Identities=17% Similarity=0.101 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008533 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ 206 (562)
Q Consensus 132 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~ 206 (562)
-+..+-+.+-++++.++-+++..++..-..... .....+-.+...+++++..+|..|+--++-
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~n------------e~dpalALLsdyv~~~~s~~ri~aIlGLgl 478 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFN------------ECDPALALLSDYLQSSSSIHRIGAILGLGL 478 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccc------------ccCHHHHHHHHhccCCCceeehHHhhhhHH
Confidence 345555555555555555555444432222111 234456667777888888888888766654
No 362
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=51.19 E-value=24 Score=26.38 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
.-|.+++..|+.+...+|. ...+++++++..|.+..+| ...++..+-.+|+.|-+.
T Consensus 4 ~~rH~~VLGL~Alv~a~Py-----~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrt 59 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPY-----DVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRT 59 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S-------SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHh
Confidence 4577888889988888764 3577999999998888776 577899999999988764
No 363
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=50.55 E-value=48 Score=28.16 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCcCch-----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 113 VGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 113 ~~~~i~~i~~~~~~~~w-----~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
++.++..+.....++.| ..++|.+..++++........|+..+..+.+.+++.
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~ 103 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPV 103 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666633333445 789999999999999999999999999998877754
No 364
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=50.31 E-value=1.5e+02 Score=24.79 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC---CHHHHH-HHHHHHHHHHHHccccccccHHHHHHH
Q 008533 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT---NKRVQE-AACSAFATLEEEAAEELAPRLEIILQH 524 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~---~~~vr~-~a~~al~~l~~~~~~~~~~~l~~il~~ 524 (562)
|-..+..++-.+...+.+ ....|.+-+++..-...+.+. ...-|. .-...+..+.+..+..+.||+..+++.
T Consensus 37 vE~~v~~~~~~lV~KLnE----~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~ 112 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNE----ATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDN 112 (153)
T ss_pred HHHHHHHHHHHHHHHccc----chhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444322 134555555665555444332 122233 334555667788899999999999999
Q ss_pred HHHHHhhhh
Q 008533 525 LMMAFGKYQ 533 (562)
Q Consensus 525 L~~~l~~~~ 533 (562)
..++|....
T Consensus 113 ~~~~L~~~~ 121 (153)
T PF08146_consen 113 AVDLLKQFN 121 (153)
T ss_pred HHHHHHHhh
Confidence 999998754
No 365
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=49.53 E-value=2.9e+02 Score=29.74 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhhhccchhh--hhHHHHHHHHc---CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhc
Q 008533 368 RKCSAAALDVLSNVFGDEILP--TLMPVIQAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLL 442 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~~~~~--~l~~~l~~~l~---~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l 442 (562)
++.|..+|..|...+=..++| .+..+.++-+. +.. -+.+.-.++.+- ..+......++..+-..-
T Consensus 244 k~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~---~~~k~Ll~WyfE-------~~LK~ly~rfievLe~lS 313 (988)
T KOG2038|consen 244 KRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKR---LRDKILLMWYFE-------HELKILYFRFIEVLEELS 313 (988)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccc---cccceehHHHHH-------HHHHHHHHHHHHHHHHHc
Q ss_pred CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHH
Q 008533 443 DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (562)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il 522 (562)
.|+-+.|+..++.++-.+... ..+.-..++..++..|.|+...+...|.+.|..+...-+..=.-.+..|-
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~---------kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIe 384 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTN---------KPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIE 384 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHH
Q ss_pred HHHHH
Q 008533 523 QHLMM 527 (562)
Q Consensus 523 ~~L~~ 527 (562)
.-+++
T Consensus 385 r~~FR 389 (988)
T KOG2038|consen 385 RLAFR 389 (988)
T ss_pred HHHcc
No 366
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=49.12 E-value=2.2e+02 Score=26.38 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=74.6
Q ss_pred hhHHHHHHHHcCCCC--CCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHH-HhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 389 TLMPVIQAKLSASGD--EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAF-LIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~--~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
..+|.+...+.+++. ..... ......++.+++..+ .+.+..++.. .....++....++..+ ..+.+.+
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~-~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~v~----~~l~~~f- 181 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQEC-IEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQVV----SYLREAF- 181 (262)
T ss_pred HHHHHHHHHhcccccccccHHH-HHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHh-
Confidence 345666666654430 00222 333455666664322 2344445543 3333445445555433 2233332
Q ss_pred hhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 466 QDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 466 ~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
..++--+++..++..|.+.-+.+|..+...|..++....-. .|.-++++..+.++++..
T Consensus 182 -------~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 182 -------FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD 240 (262)
T ss_pred -------CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc
Confidence 24455677777888888777899999999999998876211 457788899999988764
No 367
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.59 E-value=2.8e+02 Score=27.16 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 238 RKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
++.+.+.+..+-.++|+.- +.-+..-+.+..|.|-.+|..|+.-+-.+|..
T Consensus 41 k~lasq~ip~~fk~fp~la----~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSLA----DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHhhCchhh----hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 3444445544444444432 23333334567788888999999999888875
No 368
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=44.97 E-value=1.2e+02 Score=23.82 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchh---hHHhchHHHHHHHhhhccCCC-HHHHHHHHHHHHHHHhhCccc
Q 008533 182 LPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFLLSNDPS-AEVRKLVCAAFNLLIEVRPSF 255 (562)
Q Consensus 182 l~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~l~~~~~~~ 255 (562)
+..++..|.+. +.+-.+.|+++...++..-+. .+..+...++..+..+-+.-+ ++.-..-.+++..++-..|..
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~P~~ 84 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAAPEK 84 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhhHH
Confidence 33455566533 567778999999999987665 566666677777766543211 233333445666666677776
Q ss_pred hhhhHH
Q 008533 256 LEPHLR 261 (562)
Q Consensus 256 ~~~~l~ 261 (562)
..+|+-
T Consensus 85 ~~~~L~ 90 (114)
T PF10193_consen 85 VAPYLT 90 (114)
T ss_dssp HHH-HH
T ss_pred HHHHHH
Confidence 666554
No 369
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.80 E-value=5.3e+02 Score=29.23 Aligned_cols=86 Identities=15% Similarity=0.304 Sum_probs=62.4
Q ss_pred chHHHHHHHhh-----hccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 218 SMDQYLQGLFL-----LSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 218 ~~~~~l~~l~~-----~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.+..+|+.++. ...|-++++|.-+++.|+..+..+|..|-. +..+.++--.+.|...+||..++..+..+.+.
T Consensus 279 ~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 279 EIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred HHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 34455665554 346788999999999999999999987643 34556666678899999999999999888876
Q ss_pred ccchhhHHhhhhH
Q 008533 293 QLPHENLKEFLPR 305 (562)
Q Consensus 293 ~~~~~~~~~~l~~ 305 (562)
......+.-+.+.
T Consensus 357 ~~~~~~L~lFtsR 369 (1048)
T KOG2011|consen 357 DEDKDKLELFTSR 369 (1048)
T ss_pred cccchHHHHHHHH
Confidence 4333444443333
No 370
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=43.36 E-value=2.6e+02 Score=25.94 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHHhhcc--hhhhhhhHH-HHHHHHhhhcCCC---ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHH
Q 008533 406 WKDREAAVLALGAIAEGC--IKGLYPHLS-EIVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK 479 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~--~~~~~~~l~-~~~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 479 (562)
...+.-++.+++.+.... ...+..+.. .++..+....... +..+|.+++.++-+++...... ....+.-.+
T Consensus 124 ~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~---~~~~~~~~~ 200 (268)
T PF08324_consen 124 PANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKN---RSDEEWQSE 200 (268)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHC---TS-CCHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhc---CCChHHHHH
Confidence 667777777777776543 233334444 5555555555444 7999999999999999887653 112333445
Q ss_pred HHHHHHHHhcc--CCHHHHHHHHHHHHHHH
Q 008533 480 VLMGLLKRILD--TNKRVQEAACSAFATLE 507 (562)
Q Consensus 480 il~~l~~~l~d--~~~~vr~~a~~al~~l~ 507 (562)
++..+...+.. .++.+..+++.|+|+++
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 66666664322 47888899999999999
No 371
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=42.39 E-value=41 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 132 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
-++.+..+.+|.-+..|..|+.+|+.|+....
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 37888888999999999999999999887543
No 372
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=42.17 E-value=2.5e+02 Score=24.95 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhcC-CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhC-CchHH
Q 008533 32 DKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGA-ADRHI 109 (562)
Q Consensus 32 ~r~~A~~~L~~~~~~-~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~v 109 (562)
.|+-|-..+...... .+....|.+-|-. +..-+.|.+|..++....+ ..+++....+.. .+.+ .+..+
T Consensus 28 ~R~lak~~~~~~~~~~~~~~~~l~~~Lw~--~~~~E~r~~al~~l~~~~~----~~~~~~~~~~~~----~l~~~~~Wd~ 97 (208)
T cd07064 28 RRALSKPFLKESKLPDKEELWELVLELWQ--QPEREYQYVAIDLLRKYKK----FLTPEDLPLLEE----LITTKSWWDT 97 (208)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH----HHcCCchHHH
Confidence 666666666655442 3455566665654 4445788888877776433 244554333322 3332 35555
Q ss_pred HHHHHH-HHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh
Q 008533 110 RSTVGT-IVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF 188 (562)
Q Consensus 110 r~~~~~-~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 188 (562)
-...|. +++.+... -+.+.+.+.++..+++.-.|..|+.+.....+.. ....+...+...
T Consensus 98 vD~~~~~i~g~~~~~-----~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~--------------~~~~l~~~~~~~ 158 (208)
T cd07064 98 VDSLAKVVGGILLAD-----YPEFEPVMDEWSTDENFWLRRTAILHQLKYKEKT--------------DTDLLFEIILAN 158 (208)
T ss_pred HHHHHHHHhHHHHhC-----ChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc--------------CHHHHHHHHHHh
Confidence 444433 33444332 2455778888999998888888876544433321 134556666677
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhchhhHHhch
Q 008533 189 FQSPHTSLRKLSLGSVNQFIMLMPSALFVSM 219 (562)
Q Consensus 189 l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~ 219 (562)
+.+++.-|+++.-.+|..+....|+.+..++
T Consensus 159 ~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 159 LGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred CCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7788788999999999998887765544443
No 373
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=42.12 E-value=3.2e+02 Score=26.17 Aligned_cols=150 Identities=12% Similarity=0.140 Sum_probs=63.4
Q ss_pred hHHHHHHHHhhccC--CCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCch-HHHHHHHHHHHHHHHhc-
Q 008533 49 FNNYLAFILARAEG--KSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADR-HIRSTVGTIVSVVVQLG- 124 (562)
Q Consensus 49 ~~~~l~~il~~~~~--~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~-~vr~~~~~~i~~i~~~~- 124 (562)
.+..|+.+.... . ....+|.+|...+|.++.++ ++.+..+.+.++..-.+.+. .... .++..+...+
T Consensus 35 vi~~LL~~~L~~-~~~~~f~lR~AA~~c~kay~~~N-----~~~q~~~l~~~i~~~~~~~~~~~~~---nl~~~Ll~~~~ 105 (312)
T PF04869_consen 35 VIDALLNLMLNE-NSVQPFDLRCAALYCFKAYFYNN-----EEGQTAFLSTLIPSYASGNSDDPIA---NLLTALLDYDS 105 (312)
T ss_dssp HHHHHHHHHT-T-T--S-HHHHHHHHHHHHHHHTT------HHHHHHHHHTTSSTT--SS--SSSS----HHHHHT----
T ss_pred HHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHhccCCCCcccchhh---HHHHHHHHhhc
Confidence 455677766542 3 57899999999999998764 34444444444433332221 0110 1333333211
Q ss_pred -----CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc-CCCHHHHH
Q 008533 125 -----GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRK 198 (562)
Q Consensus 125 -----~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~ 198 (562)
+-..|- -..+...+-.+++..++.++.+= .....-..+ . ...+..+...+...+. +.++.++.
T Consensus 106 ~~~~dpy~~wf--Aa~il~hll~dn~~~Ke~al~V~-----~~~~~~ge~---~-vtliq~v~~lL~~~l~~~~d~ri~i 174 (312)
T PF04869_consen 106 DLSLDPYRCWF--AAVILMHLLRDNPEAKEQALRVT-----EGDESSGEE---P-VTLIQTVSELLIASLRRNSDPRIQI 174 (312)
T ss_dssp --SS-HHHHHH--HHHHHHHHHTT-HHHHHHHTT-------EE--STTS------EEHHHHHHHHTTT----T--HHHHH
T ss_pred cccCCHHHHHH--HHHHHHHHHhcCHHHHHHHHccc-----CCCCCCCCC---c-ccHHHHHHHHHHhhhhcCCchhHHH
Confidence 112331 11111112223344444444430 000000000 0 0123333333444444 45778888
Q ss_pred HHHHHHHHHHhhchhhHHhc
Q 008533 199 LSLGSVNQFIMLMPSALFVS 218 (562)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~ 218 (562)
.-+..|..|....|..+.++
T Consensus 175 gyL~LL~~WL~e~p~AV~~F 194 (312)
T PF04869_consen 175 GYLMLLIVWLFECPDAVNDF 194 (312)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHH
Confidence 88889998888777655443
No 374
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=41.95 E-value=1.9e+02 Score=23.59 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 236 EVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 236 ~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
....+++..+.......|+.+..+-..+++++..++...++.++..|.+......+.
T Consensus 68 ~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 68 KLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 344555666665556777777777778889988888888888889888887777665
No 375
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=41.92 E-value=2.7e+02 Score=25.38 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc-----
Q 008533 182 LPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP----- 253 (562)
Q Consensus 182 l~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~----- 253 (562)
.|.+-....+ +..-+|..++..++.++....+.+..++- .+++.+++....+++..+.-+..++.++.....
T Consensus 126 YpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~Yi 205 (293)
T KOG3036|consen 126 YPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYI 205 (293)
T ss_pred HHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHH
Confidence 3433333333 45679999999999999877655443322 456666666555556666666666655543321
Q ss_pred ----cchhhhHHHHH-HHHHhhcCCCChhHHHHHhhhHHHhhccc
Q 008533 254 ----SFLEPHLRNLF-EYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (562)
Q Consensus 254 ----~~~~~~l~~i~-~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 293 (562)
+.|. ++..++ .++.+..+.++..+-..++.+...++..+
T Consensus 206 Cqt~eRF~-av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 206 CQTAERFS-AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 1111 111111 22233445566666677778777777763
No 376
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=41.68 E-value=3.5e+02 Score=26.56 Aligned_cols=136 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhc----chhhhhhhHHHHHHHHhhhcC--CCChhHHHHHHHHHHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEG----CIKGLYPHLSEIVAFLIPLLD--DKFPLIRSISCWTLSR 459 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~----~~~~~~~~l~~~~~~l~~~l~--d~~~~vr~~a~~~l~~ 459 (562)
++..+.....+.-.+.. ...-..++..+-.+.+. ..+.....+..+.|.+++++- ++.|.+|..|...+..
T Consensus 208 il~~i~~~fl~~~~~~p---~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~ 284 (373)
T PF14911_consen 208 ILQVIRSNFLEFKGSAP---PPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQY 284 (373)
T ss_pred HHHHHHHHHhcCCCCCC---CCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHH
Q ss_pred hHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Q 008533 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMA 528 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~ 528 (562)
+.+..... .....-+.+-..+-...++.-..--......+.+++.--++.+.+.++.+-+.+.+.
T Consensus 285 mv~~~~~~----~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~ 349 (373)
T PF14911_consen 285 MVESCQVG----SSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDS 349 (373)
T ss_pred HHHccccc----CcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
No 377
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=41.45 E-value=1.8e+02 Score=22.99 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=39.0
Q ss_pred HhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
.+..|..+...|+....|++.+.- +-..++..+.+.+....+.-|....+.+..++.+++
T Consensus 5 ~L~~L~~s~~~I~~lt~~~~~~~~--------------~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 5 KLESLNNSQESIQTLTKWAIEHAS--------------HAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHHhccccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHh
Confidence 344555556677777777665332 234566666666666556677788888888888874
No 378
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=40.32 E-value=1.8e+02 Score=22.71 Aligned_cols=70 Identities=6% Similarity=0.077 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHH-HHHHHHHHhhhhhhHHHHHHHHH
Q 008533 475 EQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEII-LQHLMMAFGKYQRRNLRIVYDAI 544 (562)
Q Consensus 475 ~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~i-l~~L~~~l~~~~~~~~~~~~~~l 544 (562)
.+...++..+.+.+....+.-|..+.+.+..++.+++.....++... .+.+.......++..+..+...+
T Consensus 33 ~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 33 KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34456666677777666678888999999999999855433333322 44444444444444444444433
No 379
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=39.61 E-value=4.8e+02 Score=27.52 Aligned_cols=56 Identities=20% Similarity=0.091 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF 529 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l 529 (562)
..+.+..+..|++.+.++ .+..|..|+.-|+.++..++..-..++..++..|..-+
T Consensus 341 ~~~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~ 398 (563)
T PF05327_consen 341 PELADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWL 398 (563)
T ss_dssp HHHHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344445555555555554 36778888888888887765433344444444444433
No 380
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=39.61 E-value=1.8e+02 Score=22.64 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=48.5
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH-HHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI-VAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~-~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.+.+...+.+.+.... +..|-.+++.+..++..++.....++... .+.+.......++.+|.....++.-+-
T Consensus 35 a~~iv~~i~~~i~~~~---~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 35 AKEIVEIIEKHIKKCP---PEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHHHhCC---cccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3567777777777666 78899999999999998865443333333 444445555667788877766665544
No 381
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=39.19 E-value=5.1e+02 Score=29.41 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred CChhHHhHHHHHHHHHhhcchhcccccCCCCC--cchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhch--hhHHh
Q 008533 143 NDINHMEGAMDALSKICEDIPQVLDSDVPGLA--ECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMP--SALFV 217 (562)
Q Consensus 143 ~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~--~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~--~~~~~ 217 (562)
++....+.++.+|..+....++.. ++| +..+-..++.++..+.. .++.+.+.|++.+.-+..+-+ ..+..
T Consensus 1737 Ps~~~v~m~LtAL~Nli~~nPdla-----svfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~ 1811 (2235)
T KOG1789|consen 1737 PTETKVLMTLTALANLVSANPDLA-----SVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT 1811 (2235)
T ss_pred ChHHHHHHHHHHHHHHHhhCcchh-----hhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh
Q ss_pred chHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccc
Q 008533 218 SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (562)
Q Consensus 218 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~--~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 295 (562)
.. .+..++.++.+. |..|..++..|..+... ++....-+. .++.++--......+..|..+.+.++.+...+..
T Consensus 1812 ~~--vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1812 CN--VLTTLLTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred hh--HHHHHHHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcccc
Q ss_pred hhhHHhhhhHHHHHH-HhhcccChh
Q 008533 296 HENLKEFLPRLVPVL-LSNMIYADD 319 (562)
Q Consensus 296 ~~~~~~~l~~l~~~l-~~~l~~~~~ 319 (562)
...+.-.+-+.+|.. +..|..+++
T Consensus 1888 GPrV~ITL~kFLP~~f~d~~RD~PE 1912 (2235)
T KOG1789|consen 1888 GPRVTITLIKFLPEIFADSLRDSPE 1912 (2235)
T ss_pred CCceeeehHHhchHHHHHHHhcCHH
No 382
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.34 E-value=7.2e+02 Score=29.18 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=62.0
Q ss_pred CchHHHHHHHHHHHHHHHhcCc---CchHHHHHHHHHHhccC---ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchh
Q 008533 105 ADRHIRSTVGTIVSVVVQLGGI---AGWLELLQALVTCLDSN---DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPI 178 (562)
Q Consensus 105 ~~~~vr~~~~~~i~~i~~~~~~---~~w~~ll~~l~~~l~~~---~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~ 178 (562)
+...+|..--.++-.|.+..+. ..|+.+++.|-.....+ ..+..+-+..+|.-++.++=..+.. ..+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~-------sci 926 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPT-------SCI 926 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCCh-------HHH
Confidence 4445565555777777776532 45999999888666554 4566777888888888776544321 245
Q ss_pred HhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhh
Q 008533 179 NIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 179 ~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~ 210 (562)
..++..+..+.. ..+.++--.|+..|..+..+
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsDf 959 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDF 959 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHH
Confidence 556666655543 34556666666666555443
No 383
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=38.16 E-value=57 Score=27.90 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.1
Q ss_pred ChhHHHHHHHHHHHhH
Q 008533 446 FPLIRSISCWTLSRFS 461 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~ 461 (562)
++.||.-|+..+..+.
T Consensus 84 d~~VR~yAV~~L~~~s 99 (171)
T cd00872 84 DEHVREFAVRCLEKLS 99 (171)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 3555555555544433
No 384
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=37.93 E-value=1.6e+02 Score=25.43 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=39.5
Q ss_pred ChhHHhHHHHHHHHHhhcchhc--ccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 144 DINHMEGAMDALSKICEDIPQV--LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 144 ~~~~~~~al~~l~~i~~~~~~~--~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
+......++.|+..++..-... +.. ....+..+..++.+++..+|..+++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~---------~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLS---------HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHC---------SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHc---------CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456677888888888754321 111 2456788999999999999999999998775
No 385
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=37.58 E-value=2.5e+02 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHccc
Q 008533 449 IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI-LDTNKRVQEAACSAFATLEEEAAE 512 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l-~d~~~~vr~~a~~al~~l~~~~~~ 512 (562)
+......-+..++..+.. ......+...+=..++..| .|..|.|+.++.+.++-+++..+.
T Consensus 49 Ik~~Y~~nfn~ic~~i~~---ndi~~~nI~~IK~~iie~L~~D~rPSVKLA~iSLlSiIiek~~~ 110 (180)
T PHA02855 49 IKKNYKTNFNEICNFIKV---NDVTEENINDIKSQIIESLNNDNRPSVKLAIISLISMIAEKKGY 110 (180)
T ss_pred HHHHHhccHHHHHHHHHH---cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 344444444455554432 1223556667777777776 678899999999999999987643
No 386
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=37.44 E-value=3.4e+02 Score=25.09 Aligned_cols=107 Identities=10% Similarity=0.027 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC---------ccchhhhHH
Q 008533 193 HTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR---------PSFLEPHLR 261 (562)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~---------~~~~~~~l~ 261 (562)
.+.+|..++..++.++....+....++- .+++..+.....+++-.+.-+.-.+.++.... ++.|.....
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~ 188 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM 188 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH
Confidence 3579999999999999865443333221 34555555444444545555555555544321 222222222
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhH
Q 008533 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (562)
Q Consensus 262 ~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 299 (562)
-+-.++.....+.++.+-...+.+...+++.+...+.+
T Consensus 189 vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL 226 (262)
T PF04078_consen 189 VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREAL 226 (262)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHH
Confidence 22222233455666666677788888888774333333
No 387
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=36.89 E-value=2.5e+02 Score=23.46 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCC-----chHHHHHHHHHHHHHHHhcCcCchHHHH-----H
Q 008533 65 VEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA-----DRHIRSTVGTIVSVVVQLGGIAGWLELL-----Q 134 (562)
Q Consensus 65 ~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~-----~~~vr~~~~~~i~~i~~~~~~~~w~~ll-----~ 134 (562)
+..++.........+-..|+....+.++.+....++-+.+. ...+-...-.++..+.+.-.....++++ |
T Consensus 43 ~~~~~~~le~y~ei~~~aWk~a~~~~~~~~e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~P 122 (152)
T PF12422_consen 43 PQVSKSVLELYGEILFRAWKKASKDKLEEIEEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEP 122 (152)
T ss_pred ccccHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 44444445555566677788876777777777666654332 2222233334555555443223344433 6
Q ss_pred HHHHHhccCChhHHhHHHHHHHHH
Q 008533 135 ALVTCLDSNDINHMEGAMDALSKI 158 (562)
Q Consensus 135 ~l~~~l~~~~~~~~~~al~~l~~i 158 (562)
.|...++..++.+|..|..++...
T Consensus 123 iL~r~L~~~n~~Vr~na~~l~~~a 146 (152)
T PF12422_consen 123 ILWRALQAANAKVRSNAAALFLDA 146 (152)
T ss_pred HHHHHHcCCCcchhccHHHHHHHH
Confidence 788889999999999888777554
No 388
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=36.74 E-value=2.6e+02 Score=23.60 Aligned_cols=96 Identities=15% Similarity=0.340 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhc--CcCchHH----HHHHHHHHhccC--ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhH
Q 008533 111 STVGTIVSVVVQLG--GIAGWLE----LLQALVTCLDSN--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFL 182 (562)
Q Consensus 111 ~~~~~~i~~i~~~~--~~~~w~~----ll~~l~~~l~~~--~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il 182 (562)
+.++.++..+.... +.-.|+. ++..+...++.+ ++.+.+.++..|..++...+.....- .-+--+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V-------~~evt~ 104 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLV-------EQEVTL 104 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHH-------hccCCH
Confidence 44555555554432 2346744 555666666643 57888999999999988765532100 012346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhchh
Q 008533 183 PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS 213 (562)
Q Consensus 183 ~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~ 213 (562)
+.++..+++++++++..|+-.+..+....++
T Consensus 105 ~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 105 ESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 7788889999999999999888887765543
No 389
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=35.04 E-value=2.8e+02 Score=23.42 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC
Q 008533 112 TVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS 191 (562)
Q Consensus 112 ~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~ 191 (562)
.+..++..+++.- ...-++++..+.+.+-+.+.....-.+.+|..++...+..+... ..-+..++..+..
T Consensus 37 LG~~IL~~~fk~h-~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~---------~~~l~~~ld~l~~ 106 (158)
T PF14676_consen 37 LGIQILLELFKVH-EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLEC---------SSKLKELLDYLSF 106 (158)
T ss_dssp HHHHHHHHHHHH--GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S----------HHHHGGGGGTTT
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHH---------HHHHHHHHHHHHh
Confidence 4555666666542 23345666666666654332212234788999998888765432 1223334555555
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHH
Q 008533 192 PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFN 246 (562)
Q Consensus 192 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~ 246 (562)
-..++...-++++.-++...+ .+. +.++-.+-+..-..+.+.|..++..+.
T Consensus 107 lp~~~a~~ll~Al~PLi~~s~-~lr---d~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 107 LPGDVAIGLLRALLPLIKFSP-SLR---DSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp S-HHHHHHHHHHHHHHHTT-H-HHH---HHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCH-HHH---HHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 566677777777777766432 223 233555555555566777877776553
No 390
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=34.62 E-value=3.3e+02 Score=24.17 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=51.5
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhH
Q 008533 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHL 260 (562)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l 260 (562)
..+.+.....+++.-+|..|+-+...+.... ..+.+...+...+++++.-+++++-..|..+....++.+..++
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~------~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEKT------DTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc------CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3566788888999888988886654443321 2233344444456676677888889999999988887766666
Q ss_pred H
Q 008533 261 R 261 (562)
Q Consensus 261 ~ 261 (562)
.
T Consensus 190 ~ 190 (208)
T cd07064 190 A 190 (208)
T ss_pred H
Confidence 4
No 391
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.55 E-value=4.3e+02 Score=25.50 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH-------HH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-------LQ 134 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l-------l~ 134 (562)
+.+...+..+..+.|..+.++. +.+...|......+...+-..+..|+...+...-.++ ++
T Consensus 37 s~~~~~~~~g~~l~~~iL~~~~------------k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~ 104 (330)
T PF11707_consen 37 SSDLSFQSYGLELIRSILQNHL------------KLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLK 104 (330)
T ss_pred ccchhHHHHHHHHHHHHHHHHH------------HHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchh
Confidence 3444577777777777766642 2445566666666666677777777764322111111 12
Q ss_pred HHHHHhcc-----CC--------hhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHH
Q 008533 135 ALVTCLDS-----ND--------INHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (562)
Q Consensus 135 ~l~~~l~~-----~~--------~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al 201 (562)
.+.+++.- .+ +.+|...+..+..++...+.....+ ++ ....++..+++.+.....++-...+
T Consensus 105 ~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~---lL--~~~~~~~~l~k~l~~D~~~~v~~iL 179 (330)
T PF11707_consen 105 SLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRD---LL--SQKKLMSALFKGLRKDPPETVILIL 179 (330)
T ss_pred hHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHH---HH--HcCchHHHHHhcccCCCHHHHHHHH
Confidence 22233321 01 2788888888888888765543321 11 1133477889999988888999999
Q ss_pred HHHHHHHhhch---hhHHh-ch-HHHHHHHhhhccCCCH----HHHHHHHHHHHHHHh
Q 008533 202 GSVNQFIMLMP---SALFV-SM-DQYLQGLFLLSNDPSA----EVRKLVCAAFNLLIE 250 (562)
Q Consensus 202 ~~l~~~~~~~~---~~~~~-~~-~~~l~~l~~~~~~~~~----~~~~~~~~~L~~l~~ 250 (562)
+++...+-..+ ....- .+ +..+..+..+....++ .++..+.+.|..++.
T Consensus 180 ~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 180 ETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 99987664322 11110 11 2345555555444444 788888888888774
No 392
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=34.51 E-value=7.8e+02 Score=28.50 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=47.3
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
++..++..+...++.|-.....++..+..... ...-.+..++...+-.+.|++..||..|...|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~------~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSERE------YPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC------CCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 56666666666677776666555554443211 1123456899999989999999999999998887653
No 393
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.04 E-value=4.2e+02 Score=25.26 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=48.8
Q ss_pred HHHHHhhhcCCCChh-HHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 434 IVAFLIPLLDDKFPL-IRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
++..++..++..+|. ....||.-|+.+....|+.. ..... -+.=+.++..+++++++||-.|..|+..++.
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~--~vl~K--yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN--AVLSK--YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH--HHHHH--hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 677777888776666 55668888888888776520 01111 2334455667788899999999999987764
No 394
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.89 E-value=3.7e+02 Score=24.57 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHh-hcCCChH----------HHHHHHHhhc--------cCCCHHHHHHHHHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQY-SQFPDFN----------NYLAFILARA--------EGKSVEIRQAAGLLL 75 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~-~~~~~~~----------~~l~~il~~~--------~~~~~~~R~~a~~~l 75 (562)
+.+.+......+|. .|..|..+|-+- +..|+.. ..|++-..+. .+....-|---+..|
T Consensus 26 dk~~~~i~~l~~~p---~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~L 102 (293)
T KOG3036|consen 26 DKAYQLILSLVSPP---TREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALAL 102 (293)
T ss_pred cchhhHHHHhhCCc---hHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHH
Confidence 44666666655665 667777777653 3334322 2222211110 123344555555555
Q ss_pred HHHHHHhhccCChhhH-HHHHHH----Hhhhhh-----CCchHHHHHHHHHHHHHHHhcCc-----CchHHHHHHHHHHh
Q 008533 76 KNNLRTAYKSMSPSNQ-QYIKSE----LLPCLG-----AADRHIRSTVGTIVSVVVQLGGI-----AGWLELLQALVTCL 140 (562)
Q Consensus 76 k~~i~~~w~~l~~~~~-~~i~~~----ll~~l~-----~~~~~vr~~~~~~i~~i~~~~~~-----~~w~~ll~~l~~~l 140 (562)
-..+..+ ++.+ .+++.. +...|. .+.+..|-.+-.+||.+++.+.. -.|.+++|...+..
T Consensus 103 lQcvASH-----pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 103 LQCVASH-----PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHhcC-----cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 5555543 2222 333333 233342 25788999999999999998633 25788999999999
Q ss_pred ccCChhHHhHHHHHHHHHhhc
Q 008533 141 DSNDINHMEGAMDALSKICED 161 (562)
Q Consensus 141 ~~~~~~~~~~al~~l~~i~~~ 161 (562)
..++...+..|..++..|..+
T Consensus 178 e~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKILLD 198 (293)
T ss_pred hcccHHHHHHHHHHHHHHhhc
Confidence 988888888888888877654
No 395
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=33.66 E-value=2.1e+02 Score=30.40 Aligned_cols=169 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc--------------CChhHHhHHH
Q 008533 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS--------------NDINHMEGAM 152 (562)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~--------------~~~~~~~~al 152 (562)
+...++.+.+.+...+.+.+..+|-.++..++.+++..+...-..++..+.-...+ .++.+..+++
T Consensus 240 sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i 319 (993)
T COG5234 240 SHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAI 319 (993)
T ss_pred hhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHH
Q ss_pred HHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC--------CHHHHHHHHHHHHHHHhhchhhHHhchH-HHH
Q 008533 153 DALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--------HTSLRKLSLGSVNQFIMLMPSALFVSMD-QYL 223 (562)
Q Consensus 153 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--------~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l 223 (562)
..++ ++...+..+.. .-+.+.+.++++=+ ...+|.+++-.+.++...-+..+.+.++ .+.
T Consensus 320 ~~~a-la~~~~id~~d----------~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~ 388 (993)
T COG5234 320 LFFA-LAGAGLIDYSD----------CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLI 388 (993)
T ss_pred HHHH-Hhhccccchhh----------hhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHH
Q ss_pred HHHhh-hccCCCHHHHHHHHHHHHHHHhh-CccchhhhHHHHHHH
Q 008533 224 QGLFL-LSNDPSAEVRKLVCAAFNLLIEV-RPSFLEPHLRNLFEY 266 (562)
Q Consensus 224 ~~l~~-~~~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~l~~i~~~ 266 (562)
..+++ .+-|++-.+|.++..+|-+.+.. .+...+..+-.++.+
T Consensus 389 hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslIN~ 433 (993)
T COG5234 389 HLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLINY 433 (993)
T ss_pred HHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhccc
No 396
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=33.52 E-value=4.4e+02 Score=25.27 Aligned_cols=117 Identities=15% Similarity=0.021 Sum_probs=56.0
Q ss_pred ccchhhhhHHHHHHHHcCCCCCCchhHHHHHH-HHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVL-ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~-~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
|+.-+..++..+...+.... +..-+.-+. .+..++....+.....--+++..+++....++| +|......+-.++
T Consensus 59 ~ekdle~vlnsi~sLi~~~~---~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~-aR~~Vy~~lv~la 134 (378)
T KOG2753|consen 59 PEKDLECVLNSIVSLIKNAP---PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTP-ARYQVYMSLVTLA 134 (378)
T ss_pred CcchHHHHHHHHHHHHHhCC---HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCch-HHHHHHHHHHHHH
Confidence 44335666666666665443 333333222 223344333222222333456666666666666 8888777776666
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHc
Q 008533 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRV--QEAACSAFATLEEEA 510 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~v--r~~a~~al~~l~~~~ 510 (562)
.... ...|+..=+..+-+-+++-+..+ +..-..++...+..+
T Consensus 135 ~~~~-------~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~ 178 (378)
T KOG2753|consen 135 ASCK-------LIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDN 178 (378)
T ss_pred hhcc-------eeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 6543 23333333444444444433222 333444444444443
No 397
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=33.12 E-value=6.1e+02 Score=26.78 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC
Q 008533 106 DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN 143 (562)
Q Consensus 106 ~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~ 143 (562)
++.++......++.++..- +..|+..+..|++.+..+
T Consensus 87 ~~~~v~~y~~Fl~~Lvsa~-~~yl~~vl~~LV~~f~p~ 123 (563)
T PF05327_consen 87 DEDFVEAYIQFLINLVSAQ-PKYLSPVLSMLVKNFIPP 123 (563)
T ss_dssp -HHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHGGGS-
T ss_pred CHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhccCC
Confidence 4455555666666665543 456677777777766544
No 398
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=32.46 E-value=4e+02 Score=24.50 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHhcc-----------CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHH
Q 008533 128 GWLELLQALVTCLDS-----------NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSL 196 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~-----------~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~v 196 (562)
.|.++.|.|...+.+ ++.....-|+..|+.+-+ ...+|.++++++.++.
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re------------------~~A~~~li~l~~~~~~-- 87 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFRE------------------ERALPPLIRLFSQDDD-- 87 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhh------------------hhhHHHHHHHHcCCcc--
Q ss_pred HHHHHHHHHH-HHhhchhhHHhchHHHHHHHhhhccCCC--HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCC
Q 008533 197 RKLSLGSVNQ-FIMLMPSALFVSMDQYLQGLFLLSNDPS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKD 273 (562)
Q Consensus 197 r~~al~~l~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~ 273 (562)
.--..++. +.+.++..+....+.=++.+...+.+++ .=+|.+++++|..++...+..=...+.-+-.++-.....
T Consensus 88 --~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~ 165 (249)
T PF06685_consen 88 --FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLER 165 (249)
T ss_pred --hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Q ss_pred CChhHHHHHhhhHHHhhcc--ccchhhHHhhhhHHHH
Q 008533 274 TDDDVALEACEFWHSYFEA--QLPHENLKEFLPRLVP 308 (562)
Q Consensus 274 ~~~~v~~~a~~~l~~~~~~--~~~~~~~~~~l~~l~~ 308 (562)
.+.. +|+.++.. .-....+.+.+.+++.
T Consensus 166 ~~~~-------~~~~Lv~~~~dL~~~EL~~~I~~~f~ 195 (249)
T PF06685_consen 166 NPSF-------LWGSLVADICDLYPEELLPEIRKAFE 195 (249)
T ss_pred CchH-------HHHHHHHHHHhcCHHHhHHHHHHHHH
No 399
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=32.41 E-value=2.8e+02 Score=22.76 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=58.2
Q ss_pred hhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH
Q 008533 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (562)
Q Consensus 100 ~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~ 179 (562)
+.|..+...+.+.+..++-. .+.-.++++.+.+.+.+++-+.|...+..+..+++.....-... ...-..+.
T Consensus 15 ~~L~aS~qSi~kaa~fAlk~------~~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~--~~Yv~~l~ 86 (139)
T PF12243_consen 15 RRLNASQQSIQKAAQFALKN------RDMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYN--YPYVSMLQ 86 (139)
T ss_pred HHcchhHHHHHHHHHHHHHc------cccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccccc--chhHHHHH
Confidence 34444455666666555554 23446777888888888888999999999988888765432000 00001223
Q ss_pred hhHHHHHHhhcC-CCH--HHHHHHHHHHHHHHh
Q 008533 180 IFLPRLLQFFQS-PHT--SLRKLSLGSVNQFIM 209 (562)
Q Consensus 180 ~il~~l~~~l~~-~~~--~vr~~al~~l~~~~~ 209 (562)
.-+|.++...-- .+. .-+..+.++|..+-.
T Consensus 87 ~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 87 RDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 334444433322 222 456667777776654
No 400
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=32.16 E-value=3e+02 Score=23.00 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=47.2
Q ss_pred HhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcC----CCCCCchhHHHHH-HHHHHHhhcchhhhhhhHHHHHHHHhhh
Q 008533 367 LRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSA----SGDEAWKDREAAV-LALGAIAEGCIKGLYPHLSEIVAFLIPL 441 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~r~aal-~~l~~i~~~~~~~~~~~l~~~~~~l~~~ 441 (562)
+-..+.+++-.+.-.+.+..+.+++-.+.+.-.. .+......|..++ ..+..+++.++.-+.+|...+++.....
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777777777775555544444443322 1112245555554 5556777777777788888888877776
Q ss_pred cC
Q 008533 442 LD 443 (562)
Q Consensus 442 l~ 443 (562)
|+
T Consensus 117 L~ 118 (153)
T PF08146_consen 117 LK 118 (153)
T ss_pred HH
Confidence 65
No 401
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.85 E-value=2.1e+02 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.108 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhh--HHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPH--LSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~--l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
...-..++.|+-.+.+.-. ++... -+..+..|...+..+++.+|..|+..++.+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4566778889988887442 12111 2446788888999999999999999998776
No 402
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=31.46 E-value=1.8e+02 Score=34.32 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=65.2
Q ss_pred chhHHHHHHHHHHHhhcc-hhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGC-IKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~-~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~ 483 (562)
...|.-.+.-++-+.-+. .+....|++.+...+...++ ++.|.||.+..-++-.+.-.+. |+....+++-++..
T Consensus 1501 ~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~S----p~hL~~LWPImv~E 1576 (1749)
T KOG3613|consen 1501 LEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRIS----PDHLTSLWPIMVYE 1576 (1749)
T ss_pred HHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcC----HhhcccchHHHHHH
Confidence 344444444444333322 36678899999999999999 8899999988887777777663 44566666666666
Q ss_pred HHHHhccCC----------------H----HHHHHHHHHHHHHHH
Q 008533 484 LLKRILDTN----------------K----RVQEAACSAFATLEE 508 (562)
Q Consensus 484 l~~~l~d~~----------------~----~vr~~a~~al~~l~~ 508 (562)
++..+..-. + .+...||+.|..++-
T Consensus 1577 Lv~vf~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~~ 1621 (1749)
T KOG3613|consen 1577 LVQVFLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLLL 1621 (1749)
T ss_pred HHHHHHHHHhhhccccccccccccCchHHHHHHHHHHHHHHHHHh
Confidence 555433211 1 346789999887763
No 403
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=31.34 E-value=2.4e+02 Score=24.92 Aligned_cols=41 Identities=7% Similarity=0.025 Sum_probs=31.8
Q ss_pred CCCCCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008533 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ 45 (562)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~ 45 (562)
|..+|+++....|.+++.....-|.+..|+.|.+.......
T Consensus 62 m~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~ 102 (206)
T PLN03060 62 MDGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASS 102 (206)
T ss_pred HcCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 55677778889999999999998888677777776665553
No 404
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=31.21 E-value=5.4e+02 Score=29.55 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---------HHc-c-c
Q 008533 444 DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE---------EEA-A-E 512 (562)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~---------~~~-~-~ 512 (562)
-++..||..|+.-|++++... ..+|+++++++|---+-..++-||.---.++..+- +.. . .
T Consensus 901 fPDqeVR~~AVqwi~~ls~De--------L~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~ 972 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIARLSNDE--------LLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDS 972 (1639)
T ss_pred CCcHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccc
Confidence 467899999999888887642 46777777777654444445666654444444331 111 1 2
Q ss_pred cccccHHHHHHHHHHHHhhhh-hhH--HHHHHHHHHHHHHHHhh
Q 008533 513 ELAPRLEIILQHLMMAFGKYQ-RRN--LRIVYDAIGTLADAVGF 553 (562)
Q Consensus 513 ~~~~~l~~il~~L~~~l~~~~-~~~--~~~~~~~l~~l~~~~~~ 553 (562)
.+.-.++.++..|+..-...- ++- +..++..++.+++.+.+
T Consensus 973 qfs~rYq~ll~aLl~~~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~ 1016 (1639)
T KOG0905|consen 973 QFSLRYQNLLAALLDCCGKNLREEFKKQHKLVNELGSIAEDVRS 1016 (1639)
T ss_pred eeehHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444777777776664431 222 22678888888877764
No 405
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=31.03 E-value=1.1e+02 Score=26.16 Aligned_cols=77 Identities=18% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccc
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE 513 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~ 513 (562)
.+|.++.+..=.++.-...+...+..+.. ......++.|-.... ++.||..|+..|..+- .+.
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~~------------i~~~~aLeLL~~~f~--~~~VR~yAV~~L~~~s---d~e 109 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWAK------------IDIEDALELLSPYFT--NPVVRKYAVSRLKLAS---DEE 109 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCCC------------CCHHHHHHHcCccCC--CHHHHHHHHHHHHhCC---HHH
Confidence 45555555543445444444444444321 123344444444333 5788888888776532 356
Q ss_pred ccccHHHHHHHHHH
Q 008533 514 LAPRLEIILQHLMM 527 (562)
Q Consensus 514 ~~~~l~~il~~L~~ 527 (562)
+..|++++++.|.-
T Consensus 110 L~~yL~QLVQaLKy 123 (166)
T cd00870 110 LLLYLLQLVQALKY 123 (166)
T ss_pred HHHHHHHHHHHHHh
Confidence 77788888776543
No 406
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.70 E-value=5e+02 Score=28.15 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhccccCC
Q 008533 533 QRRNLRIVYDAIGTLADAVGFELNQVLLSC 562 (562)
Q Consensus 533 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 562 (562)
....+..++++|.+++++-..+.|.|.+.|
T Consensus 266 ee~~~ekvl~aiT~~ae~~~veRF~piv~g 295 (1102)
T KOG1924|consen 266 EENGLEKVLEAITTIAEAKPVERFRPIVEG 295 (1102)
T ss_pred hhhHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 344455777777777777666666665443
No 407
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=30.36 E-value=1.2e+02 Score=26.42 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=12.6
Q ss_pred CChhHHHHHHHHHHHhHH
Q 008533 445 KFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~ 462 (562)
+++.||.-|+..+..+..
T Consensus 88 ~~~~Vr~yAV~~L~~~~d 105 (184)
T smart00145 88 PDPFVRAYAVERLESASD 105 (184)
T ss_pred CCHHHHHHHHHHHHhCCH
Confidence 467888888777766554
No 408
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=30.07 E-value=1.5e+02 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=27.2
Q ss_pred HhhccCChhhHHHHHHHHhhhhhCCchH-HHHHHHHHHH
Q 008533 81 TAYKSMSPSNQQYIKSELLPCLGAADRH-IRSTVGTIVS 118 (562)
Q Consensus 81 ~~w~~l~~~~~~~i~~~ll~~l~~~~~~-vr~~~~~~i~ 118 (562)
..|..++++.++.+..++...|..-... |+......++
T Consensus 15 ~ly~~l~~~er~~lv~nia~~l~~v~~~~i~~r~l~~f~ 53 (68)
T PF06628_consen 15 DLYRVLSDEERERLVENIAGHLSGVSDEEIQERVLAYFY 53 (68)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHccCChhhHHHHHHHHHH
Confidence 3577788999999999998888765544 7765544443
No 409
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.81 E-value=96 Score=24.45 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHH
Q 008533 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 430 ~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 463 (562)
+-...++.++..|.|+++.|+..|..++-+.+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 3455788899999999999999999998888764
No 410
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=29.20 E-value=3.4e+02 Score=22.67 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=66.2
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhc------CcCchHHHHHHHHHHhccCC--------h---h------HHhHHHH
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG------GIAGWLELLQALVTCLDSND--------I---N------HMEGAMD 153 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~------~~~~w~~ll~~l~~~l~~~~--------~---~------~~~~al~ 153 (562)
.++..|.+..-.-|+.+..-+..+.... +...|..++..|+.++..+. . . ....+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 3566777777888999999999888653 34689999999988775321 1 1 1223445
Q ss_pred HHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHH----HHHHHHHHHHHHHh
Q 008533 154 ALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTS----LRKLSLGSVNQFIM 209 (562)
Q Consensus 154 ~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~----vr~~al~~l~~~~~ 209 (562)
+|..+++.....+.. ..+..++..+.+.+.+++.. +...-.++|..++.
T Consensus 88 ~lR~~ve~~~~~~k~-------kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~ 140 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKR-------KTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILS 140 (155)
T ss_pred HHHHHHHHHHhhccc-------chHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHC
Confidence 555555554443322 35677888888888877622 33334444544443
No 411
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=28.81 E-value=39 Score=29.32 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=9.4
Q ss_pred ChhHHHHHHHHHHHhH
Q 008533 446 FPLIRSISCWTLSRFS 461 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~ 461 (562)
++.||.-|+..+..+.
T Consensus 90 ~~~VR~yAv~~L~~~~ 105 (184)
T PF00613_consen 90 DPFVRQYAVRRLESLS 105 (184)
T ss_dssp -HHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4777777766665544
No 412
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=27.92 E-value=7.8e+02 Score=26.43 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHh-hcCCC--hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccC
Q 008533 12 QGFNEICRLLEQQ--ISPSSTADKSQIWQQLQQY-SQFPD--FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (562)
Q Consensus 12 ~~~~~l~~~l~~~--~s~d~~~~r~~A~~~L~~~-~~~~~--~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l 86 (562)
..+..+.+.|... .+|+.. .|+.+...+..+ ...|+ -...+..+|.+ ..-+.+|-.+...+|..+...|..-
T Consensus 437 ~~~~~~~q~L~~i~~~~p~~~-lR~~~~~ll~~iL~~~p~~~rf~~i~dlLe~--c~~~~~k~~~I~~lKd~i~~a~~~~ 513 (633)
T PF08568_consen 437 EVFMQFLQALLLISVYCPSPE-LRKIAFTLLTRILHLFPEETRFKFIRDLLEN--CPFESLKASAIGWLKDEILKALQSS 513 (633)
T ss_pred HHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHCCcHhHHHHHHHHHhc--CCCHhHHHHHHHHHHHHHHHHhccC
Confidence 4556666666655 468888 999999999984 44443 23456677775 7889999999999999987776653
No 413
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=27.84 E-value=2.4e+02 Score=24.14 Aligned_cols=45 Identities=24% Similarity=0.116 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSIS 453 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a 453 (562)
..+|.-|+..|..+. .+.+..|+++++..+.-...+.++.++.-.
T Consensus 85 ~~VR~yAV~~L~~~s---d~eL~~yL~QLVQaLKyE~~~ds~La~FLl 129 (171)
T cd00872 85 EHVREFAVRCLEKLS---DDELLQYLLQLVQVLKYEPYHDSDLVRFLL 129 (171)
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHcccccCCHHHHHHH
Confidence 677887777666543 345666777776665554444445544433
No 414
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.59 E-value=1.5e+02 Score=24.87 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHHHHccccccccHHHHHHHH
Q 008533 492 NKRVQEAACSAFATLEEEAAEELAPRLEIILQHL 525 (562)
Q Consensus 492 ~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L 525 (562)
++.||..|+..|..+- .+.+..|++++++.|
T Consensus 84 ~~~vr~yAv~~L~~~~---~~~l~~ylpQLVQaL 114 (152)
T cd00864 84 DPVVRQYAVRVLESAS---DDELLLYLPQLVQAL 114 (152)
T ss_pred CHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 4778887777665422 245667777777765
No 415
>PHA02836 putative transmembrane protein; Provisional
Probab=27.41 E-value=2e+02 Score=23.01 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCC
Q 008533 407 KDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDK 445 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~ 445 (562)
..-..-+..+|.+++.++ .....|++.++|.++..+.|.
T Consensus 102 ~~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 102 VSALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred chHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 444455667788888885 456789999999999999874
No 416
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=26.99 E-value=1.4e+02 Score=23.49 Aligned_cols=56 Identities=23% Similarity=0.217 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc---ccccccHHHHHHHHHHHHhhhh
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA---EELAPRLEIILQHLMMAFGKYQ 533 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~---~~~~~~l~~il~~L~~~l~~~~ 533 (562)
|+.+++..+... +.++.-...|..+.-.++..-+ ..+..+..+++..|+.+=++.+
T Consensus 4 YlrDll~~L~~~--~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~ 62 (114)
T PF10193_consen 4 YLRDLLEYLRSD--DEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFD 62 (114)
T ss_dssp -HHHHHHHHT--------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT-
T ss_pred hHHHHHHHHhcC--cCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCC
Confidence 555555544421 1145566678888888887654 4888899999999888777654
No 417
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.96 E-value=3.2e+02 Score=23.53 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHh
Q 008533 78 NLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 78 ~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~ 123 (562)
.+...|+...+. ..+++.+.--...||.-+|.+++.-.+.
T Consensus 112 ~Fq~FW~~~~~N------~~mle~itGFedsvr~yachvv~iTyQk 151 (217)
T KOG3252|consen 112 RFQQFWQEADEN------RDMLEGITGFEDSVRKYACHVVGITYQK 151 (217)
T ss_pred hHHHHhhhhccc------hHHhcCCCcHHHHHHHHHHHheechHhh
Confidence 445678765543 2344444444678999999988876654
No 418
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=25.53 E-value=3.2e+02 Score=26.15 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHH--HHHHHhhhc---CCCChhHHHHHHHHHHHhHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSE--IVAFLIPLL---DDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~--~~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
.+.+.+-++.|....-++.+.+..++.. .++.++... .+.++.|+.-++..||-..++.
T Consensus 170 ~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 170 PRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 8899999999999998888887777653 566666643 3578999999999999888865
No 419
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=25.36 E-value=2.3e+02 Score=26.23 Aligned_cols=105 Identities=17% Similarity=0.124 Sum_probs=60.7
Q ss_pred hcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH-HHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHc-ccc-c
Q 008533 441 LLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE-KVLMGLLKRILDT---NKRVQEAACSAFATLEEEA-AEE-L 514 (562)
Q Consensus 441 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~l~d~---~~~vr~~a~~al~~l~~~~-~~~-~ 514 (562)
...+..+..+..+++++.++...-. +......+.. .++..+....... +..+|.+++..+-++.-.. ... -
T Consensus 118 ~~~~~~~~~~ml~lR~l~NlF~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~ 194 (268)
T PF08324_consen 118 GSSSSPPANQMLALRLLANLFSHPP---GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSD 194 (268)
T ss_dssp CTTTSSHHHHHHHHHHHHHHTTSCC---CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred ccCCCcHHHHHHHHHHHHHhhCCCc---cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3345678888888888888765311 0001122223 3444443333332 6889999999888887554 222 2
Q ss_pred cccHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHH
Q 008533 515 APRLEIILQHLMMAFGK--YQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 515 ~~~l~~il~~L~~~l~~--~~~~~~~~~~~~l~~l~ 548 (562)
...-..++..+...+.. .+.+..-.++-|+|+++
T Consensus 195 ~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 195 EEWQSELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 33444566666664433 24455667888888887
No 420
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.12 E-value=3.4e+02 Score=22.33 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHH
Q 008533 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL 263 (562)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i 263 (562)
-+.+..++.++++++++.+++|+...-. ..+.+|-+.+
T Consensus 19 ~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l~pY~d~L 56 (141)
T PF07539_consen 19 YDALLRLLSSRDPEVQKLALDCLLTWKD---PYLTPYKDNL 56 (141)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHhHHHHH
Confidence 3445566778899999999999976422 2445554443
No 421
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.87 E-value=1.7e+02 Score=23.05 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
+-.-.++.++..|.|+++.|...|...|...+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4456788889999999999999999888877754
No 422
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=24.72 E-value=4.9e+02 Score=22.95 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc
Q 008533 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP 253 (562)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~ 253 (562)
...-..++.++..++..+.....+.+..++..+-++-.+.+...+..+=.+++..++..+
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 334455555555555544333334455555556555555556667777777777665543
No 423
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=23.96 E-value=8.6e+02 Score=25.58 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhcC----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHH
Q 008533 431 LSEIVAFLIPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFAT 505 (562)
Q Consensus 431 l~~~~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~vr~~a~~al~~ 505 (562)
+-.++..+...++ .+.+.+.......++-++..... .....+.+++..+...++ ++...+|.+++..++.
T Consensus 432 i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~-----l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~ 506 (559)
T PF14868_consen 432 IVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQL-----LDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSS 506 (559)
T ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHh-----cChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHH
Confidence 3344455555542 24466666655555544444332 234556777777777764 3455689999999988
Q ss_pred HHHHc-ccccc-ccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 506 LEEEA-AEELA-PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 506 l~~~~-~~~~~-~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
+.+.. ++..+ +-.+.+..-.-.++.+...-....+++|.+.+|+...
T Consensus 507 lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 507 LGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred hccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 88765 44444 4455555555555566666667799999999988654
No 424
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=23.83 E-value=5.3e+02 Score=23.09 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=54.4
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
...||++++......++.+.-.+.+++.+...-+..-. ....+++.+-..++|...-|+++.=.+|.
T Consensus 113 ~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~-------------~~~~if~i~E~~l~d~e~fV~KAigWaLr 179 (222)
T COG4912 113 IPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTL-------------DLLEIFEIIELLLGDKEFFVQKAIGWALR 179 (222)
T ss_pred cccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCcc-------------chhHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 46899999999777777777777776655544443322 22458888888899988899999999999
Q ss_pred HHHhhchh
Q 008533 206 QFIMLMPS 213 (562)
Q Consensus 206 ~~~~~~~~ 213 (562)
.+....++
T Consensus 180 q~~k~~~e 187 (222)
T COG4912 180 QIGKHSNE 187 (222)
T ss_pred HHHhhchH
Confidence 88774443
No 425
>PF14961 BROMI: Broad-minded protein
Probab=23.25 E-value=1.2e+03 Score=27.05 Aligned_cols=134 Identities=17% Similarity=0.099 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhccCCh-hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 008533 130 LELLQALVTCLDSNDI-NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~ 208 (562)
++=++.+.+.+..+.| .+|..|+..|.. ..+..+.+ ......+...+..+|.|+++.+...+++......
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~---~p~SDVls------~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~f 230 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCS---APPSDVLS------CESWSVLRENLTDALSDPDPEISDASLRFHAKMF 230 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhc---CChhhccc------cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 3344566666665554 678788776643 33332221 1356777778889999999999999999999998
Q ss_pred hhchhhHHhc-hHHHHHHH---h-----------hhccCCCH--HHHHHHHHHHHHHHhhCcc----chhhhHHHHHHHH
Q 008533 209 MLMPSALFVS-MDQYLQGL---F-----------LLSNDPSA--EVRKLVCAAFNLLIEVRPS----FLEPHLRNLFEYM 267 (562)
Q Consensus 209 ~~~~~~~~~~-~~~~l~~l---~-----------~~~~~~~~--~~~~~~~~~L~~l~~~~~~----~~~~~l~~i~~~~ 267 (562)
...|-.+... ...+++.+ + ..+.-.++ ...-..++.|..+-...+. +-.+|++++++-.
T Consensus 231 ssSpl~~trEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsT 310 (1296)
T PF14961_consen 231 SSSPLNMTREIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVEST 310 (1296)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHH
Confidence 8766443221 11222222 1 11111112 2223345566666555554 3456778888777
Q ss_pred HhhcC
Q 008533 268 LQVNK 272 (562)
Q Consensus 268 ~~~~~ 272 (562)
+..+.
T Consensus 311 LsLLs 315 (1296)
T PF14961_consen 311 LSLLS 315 (1296)
T ss_pred HHHhc
Confidence 66543
No 426
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=23.07 E-value=4.6e+02 Score=22.10 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC---cCchHHHHHHHHHHhccCChh
Q 008533 70 AAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDSNDIN 146 (562)
Q Consensus 70 ~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~---~~~w~~ll~~l~~~l~~~~~~ 146 (562)
++..+|.+.++.+ +..+..|.+.+++.+.............+++.|++..+ .+.|..+-. +...+..=.++
T Consensus 37 LG~~IL~~~fk~h-----~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~-~ld~l~~lp~~ 110 (158)
T PF14676_consen 37 LGIQILLELFKVH-----EMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKE-LLDYLSFLPGD 110 (158)
T ss_dssp HHHHHHHHHHHH------GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHG-GGGGTTTS-HH
T ss_pred HHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHH-HHHHHHhCCHH
Confidence 6777777777665 34566666666665532211112345678888887652 234443332 22222222234
Q ss_pred HHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 008533 147 HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (562)
Q Consensus 147 ~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (562)
+..+-+.++.=+++.-.. .-+.++-.+-+.+-+.+.+.|..|..-|
T Consensus 111 ~a~~ll~Al~PLi~~s~~------------lrd~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 111 VAIGLLRALLPLIKFSPS------------LRDSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHHHHTT-HH------------HHHHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH------------HHHHHHHHHHHHHccccHHHHHHHHHHh
Confidence 433444444444332221 2345566677777777778888877654
No 427
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.73 E-value=1.4e+03 Score=27.46 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (562)
+.++...++....+.+...|-.|...+..+.+..++...+.++++++-|-.++++.++.+-..+-..+-.+-+..|+.+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l- 1617 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPL- 1617 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhh-
Confidence 7777777777777888999999999999999999999999999999999999999888877777778888888888754
Q ss_pred ccc
Q 008533 557 QVL 559 (562)
Q Consensus 557 ~~~ 559 (562)
+-|
T Consensus 1618 ~~y 1620 (1621)
T KOG1837|consen 1618 QSY 1620 (1621)
T ss_pred hhc
Confidence 444
No 428
>PF06812 ImpA-rel_N: ImpA-related N-terminal; InterPro: IPR010657 This entry represents a conserved region located towards the N-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=22.25 E-value=2.6e+02 Score=18.96 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 32 ~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
+++.|.+.|.+-.++=....+++..+.. .....-=..+..++...+.++|..+-|
T Consensus 5 v~~~~~~lL~~~sKDlrv~~~l~~a~~~--~~g~~gl~~gl~ll~~ll~~~W~~l~P 59 (62)
T PF06812_consen 5 VEELALELLSEQSKDLRVAVWLTEALLR--LEGLAGLAEGLELLADLLENYWDSLHP 59 (62)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHH--ccChhHHHHHHHHHHHHHHHCCcccCC
Confidence 5666666665544433445556665554 333333335667788888999987654
No 429
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.94 E-value=1.7e+02 Score=22.49 Aligned_cols=55 Identities=16% Similarity=0.016 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcchhhHH--HHHHHHHHH--hccCCHHHHHHHHHHHHHHHHHc
Q 008533 450 RSISCWTLSRFSKFIVQDIGHQNGREQFE--KVLMGLLKR--ILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~il~~l~~~--l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
|...+.+||+++-..+. .++.+. .-++.++.+ +.+.+|-+|..|..|+.++++..
T Consensus 3 K~~lvrlianl~~~~~~------~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE------VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred HHHHHHHHHHHHhCCHH------HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 45556667776643221 122221 225555554 34558999999999999999875
No 430
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=21.68 E-value=4.6e+02 Score=21.92 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=24.7
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 434 IVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 434 ~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
.+..+.+... ++.||.-|+..+..+... ....|++++++.+
T Consensus 74 aL~LL~~~~~--~~~vr~yAv~~L~~~~~~--------~l~~ylpQLVQaL 114 (152)
T cd00864 74 ALELLSPKYP--DPVVRQYAVRVLESASDD--------ELLLYLPQLVQAL 114 (152)
T ss_pred HHHHcCCcCC--CHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHH
Confidence 3444444443 499999999888776543 1345555555544
No 431
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=21.08 E-value=2.1e+02 Score=18.79 Aligned_cols=44 Identities=16% Similarity=0.001 Sum_probs=28.6
Q ss_pred HHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 417 GAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 417 ~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
+.++...++....|-++++..+...-..=+|.+|...+.++--+
T Consensus 3 a~va~cYp~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 3 AHVAHCYPKETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred cccccccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 34455556665666666666666665556789998887766543
No 432
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=20.87 E-value=3.5e+02 Score=21.49 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHh
Q 008533 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRI---LDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l---~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~ 530 (562)
..+..++... .....+..++..+.+.| ...+.++...|...|..++.+..+.+...+..-...+..+..
T Consensus 22 ~~l~eIa~~t-------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~ 93 (125)
T PF01417_consen 22 KLLAEIAQLT-------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQD 93 (125)
T ss_dssp HHHHHHHHHT-------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG
T ss_pred HHHHHHHHHH-------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcce
No 433
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.61 E-value=7.2e+02 Score=26.70 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHHH-HHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHh
Q 008533 62 GKSVEIRQAAGLLLKNNL-RTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL 140 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i-~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l 140 (562)
..+..+-.+...+.|-.+ .+.|. +..||..+-...+-.+..|+.-+..++...+.....+....++|.|..++
T Consensus 650 ~Hde~lstlqSRl~kLqiVR~~We------r~DiK~sI~s~~kl~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LL 723 (825)
T KOG0267|consen 650 THNEFLSTLQSRLTKLQIVRHFWE------RSDIKGSIGSLRKLADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALL 723 (825)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh------hhhhhHHHHHHHHhhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHh
Confidence 345555556666666544 56675 44566666555555666777777777777776655667788999999999
Q ss_pred ccCChhHHhHHHHHHHHHhhcchhc
Q 008533 141 DSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 141 ~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
.+.-...+...+..|..++..++..
T Consensus 724 gS~~e~~v~vsld~Llklv~~fgt~ 748 (825)
T KOG0267|consen 724 GSKTERPVNVSLDMLLKLVAVFGTV 748 (825)
T ss_pred cccchhhhhhHHHHHHHHHHHhhhh
Confidence 9887777777888888777766653
No 434
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=20.54 E-value=7.5e+02 Score=23.62 Aligned_cols=204 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCch---------HHHHHHHHHHhcc-CChhHHhHHHHHHHHHh
Q 008533 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW---------LELLQALVTCLDS-NDINHMEGAMDALSKIC 159 (562)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w---------~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~ 159 (562)
.++.+...+++.+.+-+-.-|+-++.+.+.+....-.... |+++..++..-.+ ++.....+.+.-=..=.
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhh
Q ss_pred hcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh----hchhhHHhchHHHHHH-HhhhccCCC
Q 008533 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM----LMPSALFVSMDQYLQG-LFLLSNDPS 234 (562)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~----~~~~~~~~~~~~~l~~-l~~~~~~~~ 234 (562)
+.+...+.. +.-+..++..++.++-++-..|+.++..++. .+.+.+..+.+.+... .-.++.+.+
T Consensus 156 e~LakiiL~----------s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~N 225 (342)
T KOG1566|consen 156 EFLAKIILE----------STNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSEN 225 (342)
T ss_pred HHHHHHHHc----------chhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccc
Q ss_pred HHHHHHHHHHHHHHHhhCc--cchhhhHH--HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhh
Q 008533 235 AEVRKLVCAAFNLLIEVRP--SFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL 303 (562)
Q Consensus 235 ~~~~~~~~~~L~~l~~~~~--~~~~~~l~--~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l 303 (562)
--.+.+..+.|+.+.-..+ ..+..|+. .=+.++...++++...+...|+.....++..+.-.+.+...+
T Consensus 226 yvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL 298 (342)
T KOG1566|consen 226 YVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDIL 298 (342)
T ss_pred eehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHH
No 435
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=20.41 E-value=5.9e+02 Score=23.79 Aligned_cols=41 Identities=5% Similarity=0.037 Sum_probs=31.7
Q ss_pred CCCCCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Q 008533 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ 45 (562)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~ 45 (562)
|..+|+++....|.+.+.....-|.+..|+.|+......+.
T Consensus 115 m~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~~A~~ 155 (283)
T PLN00047 115 MEGYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARS 155 (283)
T ss_pred HccCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 55677788889999999999998988677777766655553
Done!