Query 008533
Match_columns 562
No_of_seqs 211 out of 1800
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 4E-59 1.4E-63 510.2 53.4 519 5-558 3-521 (852)
2 1wa5_C Importin alpha RE-expor 100.0 9.3E-47 3.2E-51 416.1 42.4 509 13-560 3-592 (960)
3 2bpt_A Importin beta-1 subunit 100.0 4.6E-45 1.6E-49 401.3 51.9 491 15-559 4-538 (861)
4 1qgr_A Protein (importin beta 100.0 3.1E-43 1.1E-47 387.5 46.0 483 16-554 2-542 (876)
5 1ibr_B P95, importin beta-1 su 100.0 4E-43 1.4E-47 357.9 35.1 419 16-489 2-461 (462)
6 3m1i_C Exportin-1; heat repeat 100.0 8.3E-42 2.8E-46 379.7 42.1 514 11-559 12-629 (1049)
7 2x19_B Importin-13; nuclear tr 100.0 3.9E-40 1.3E-44 365.4 41.9 502 12-560 21-610 (963)
8 2x1g_F Cadmus; transport prote 100.0 1.4E-40 4.7E-45 368.7 36.1 500 13-560 5-626 (971)
9 4hat_C Exportin-1; heat repeat 100.0 5.2E-38 1.8E-42 340.9 41.2 509 12-555 13-624 (1023)
10 3ibv_A Exportin-T; karyopherin 100.0 4.1E-37 1.4E-41 334.0 35.7 494 12-552 3-631 (980)
11 3gjx_A Exportin-1; transport, 100.0 3E-34 1E-38 309.3 36.6 511 13-558 26-653 (1073)
12 1u6g_C TIP120 protein, CAND1; 100.0 9.6E-34 3.3E-38 321.5 40.7 504 15-560 6-608 (1230)
13 3a6p_A Exportin-5; exportin-5, 100.0 3.6E-33 1.2E-37 311.1 37.8 511 10-554 6-662 (1204)
14 4fdd_A Transportin-1; heat rep 100.0 1.1E-27 3.7E-32 261.8 49.0 489 16-554 215-789 (852)
15 1b3u_A Protein (protein phosph 100.0 2.9E-28 9.8E-33 256.0 38.8 419 86-547 157-585 (588)
16 1b3u_A Protein (protein phosph 100.0 5.1E-28 1.7E-32 254.1 36.2 498 13-556 46-555 (588)
17 2bpt_A Importin beta-1 subunit 100.0 2.8E-26 9.5E-31 252.0 49.7 493 17-560 225-776 (861)
18 1qgr_A Protein (importin beta 100.0 4.7E-25 1.6E-29 242.7 48.6 492 17-560 218-794 (876)
19 1u6g_C TIP120 protein, CAND1; 100.0 3.3E-26 1.1E-30 259.7 34.5 453 55-560 10-517 (1230)
20 1ibr_B P95, importin beta-1 su 99.9 8E-22 2.7E-26 200.4 36.5 402 55-530 5-461 (462)
21 2jdq_A Importin alpha-1 subuni 99.9 1.1E-19 3.7E-24 183.9 36.1 390 96-548 23-442 (450)
22 1wa5_B Importin alpha subunit; 99.9 1.5E-19 5.3E-24 186.5 30.7 393 96-549 90-510 (530)
23 2jdq_A Importin alpha-1 subuni 99.8 6E-19 2E-23 178.5 30.1 365 126-553 12-394 (450)
24 2vgl_B AP-2 complex subunit be 99.8 1.4E-18 4.9E-23 180.7 33.6 434 23-547 57-530 (591)
25 4b8j_A Importin subunit alpha- 99.8 6.8E-18 2.3E-22 174.2 32.6 391 96-550 77-497 (528)
26 1wa5_B Importin alpha subunit; 99.8 3.2E-18 1.1E-22 176.6 28.7 401 48-509 87-511 (530)
27 2vgl_B AP-2 complex subunit be 99.8 5.5E-17 1.9E-21 168.8 36.4 465 18-552 16-496 (591)
28 4b8j_A Importin subunit alpha- 99.8 1.8E-17 6.3E-22 171.0 28.3 361 132-553 75-447 (528)
29 1wa5_C Importin alpha RE-expor 99.8 8.1E-16 2.8E-20 169.7 40.6 482 11-554 34-633 (960)
30 1w63_A Adapter-related protein 99.8 3.7E-15 1.2E-19 155.6 39.6 449 10-548 68-576 (618)
31 3now_A UNC-45 protein, SD10334 99.8 3.1E-15 1.1E-19 156.4 38.6 458 32-549 220-737 (810)
32 3now_A UNC-45 protein, SD10334 99.8 2.7E-15 9.2E-20 156.8 38.0 461 17-549 248-782 (810)
33 2z6g_A B-catenin; FULL-length, 99.7 1.2E-15 4.2E-20 163.4 32.3 460 15-549 153-663 (780)
34 1jdh_A Beta-catenin; beta-cate 99.7 1.6E-15 5.6E-20 156.6 31.8 451 26-547 28-528 (529)
35 2z6h_A Catenin beta-1, beta-ca 99.7 2.8E-15 9.5E-20 158.1 31.8 455 14-549 16-527 (644)
36 3tpo_A Importin subunit alpha- 99.7 8.6E-15 2.9E-19 150.4 31.2 361 131-552 76-452 (529)
37 2z6g_A B-catenin; FULL-length, 99.7 3.7E-15 1.3E-19 159.6 29.3 456 17-548 117-621 (780)
38 3ul1_B Importin subunit alpha- 99.7 5.2E-15 1.8E-19 151.1 29.0 365 125-552 53-433 (510)
39 3ul1_B Importin subunit alpha- 99.7 1.4E-14 4.8E-19 147.9 30.5 386 17-508 59-478 (510)
40 1w63_A Adapter-related protein 99.7 1.6E-13 5.4E-18 143.2 37.6 394 62-552 81-493 (618)
41 2qk2_A LP04448P; mini spindles 99.7 1.9E-15 6.6E-20 138.5 20.2 185 363-561 27-217 (242)
42 3tpo_A Importin subunit alpha- 99.7 3.3E-14 1.1E-18 146.1 30.3 386 16-508 77-497 (529)
43 2qk1_A Protein STU2; STU2P, XM 99.7 1.5E-15 5.3E-20 138.5 16.3 192 362-560 27-231 (249)
44 2vgl_A Adaptor protein complex 99.7 3.2E-12 1.1E-16 132.9 42.7 442 18-547 77-587 (621)
45 2x19_B Importin-13; nuclear tr 99.6 1.3E-12 4.3E-17 144.9 41.0 470 15-553 103-653 (963)
46 2z6h_A Catenin beta-1, beta-ca 99.6 9.8E-13 3.4E-17 138.7 36.6 426 14-510 58-529 (644)
47 2x1g_F Cadmus; transport prote 99.6 2.4E-12 8.1E-17 142.6 40.9 380 108-553 204-670 (971)
48 1jdh_A Beta-catenin; beta-cate 99.6 6.2E-13 2.1E-17 137.2 32.3 420 13-506 60-528 (529)
49 2vgl_A Adaptor protein complex 99.6 1.5E-12 5E-17 135.4 31.1 353 97-523 78-448 (621)
50 3m1i_C Exportin-1; heat repeat 99.5 2.9E-11 9.8E-16 134.6 38.0 464 26-559 60-685 (1049)
51 4hat_C Exportin-1; heat repeat 99.5 6.4E-10 2.2E-14 121.3 41.4 461 32-560 116-686 (1023)
52 2qk2_A LP04448P; mini spindles 99.5 6.3E-12 2.2E-16 115.0 21.1 196 96-306 18-219 (242)
53 4hxt_A De novo protein OR329; 99.5 2E-11 7E-16 112.5 24.3 243 181-516 3-249 (252)
54 2qk1_A Protein STU2; STU2P, XM 99.4 4.4E-12 1.5E-16 115.6 18.8 201 97-305 20-233 (249)
55 3l6x_A Catenin delta-1; cateni 99.4 3E-10 1E-14 114.9 32.4 366 126-548 42-475 (584)
56 1xm9_A Plakophilin 1; armadill 99.4 4.9E-11 1.7E-15 119.7 26.2 378 133-548 4-448 (457)
57 1oyz_A Hypothetical protein YI 99.4 3.5E-11 1.2E-15 112.8 23.1 61 390-461 160-220 (280)
58 4hxt_A De novo protein OR329; 99.4 1.8E-10 6.2E-15 106.1 24.7 239 132-465 3-244 (252)
59 4db8_A Armadillo-repeat protei 99.3 1.1E-10 3.7E-15 107.6 20.3 233 179-462 11-251 (252)
60 1xm9_A Plakophilin 1; armadill 99.3 3.5E-10 1.2E-14 113.5 25.0 379 96-508 5-449 (457)
61 4db8_A Armadillo-repeat protei 99.3 8E-11 2.8E-15 108.5 17.6 234 48-291 12-251 (252)
62 3l6x_A Catenin delta-1; cateni 99.3 3.5E-09 1.2E-13 107.1 29.3 352 96-508 51-476 (584)
63 1oyz_A Hypothetical protein YI 99.3 6.8E-10 2.3E-14 104.0 22.7 252 96-459 26-279 (280)
64 3opb_A SWI5-dependent HO expre 99.3 7.4E-08 2.5E-12 99.1 37.9 397 86-533 285-760 (778)
65 3nmz_A APC variant protein; pr 99.2 2.8E-09 9.6E-14 105.3 26.0 312 145-512 96-454 (458)
66 3opb_A SWI5-dependent HO expre 99.2 7.2E-08 2.5E-12 99.2 36.4 358 130-549 295-728 (778)
67 3ibv_A Exportin-T; karyopherin 99.2 1.7E-08 5.7E-13 110.1 32.1 398 109-553 414-874 (980)
68 2iw3_A Elongation factor 3A; a 99.2 7.9E-08 2.7E-12 102.3 36.0 341 97-508 18-379 (986)
69 3nmz_A APC variant protein; pr 99.2 2.6E-09 9E-14 105.5 20.9 351 132-550 33-451 (458)
70 3ltj_A Alpharep-4; protein eng 99.1 2.2E-09 7.7E-14 94.9 17.7 184 220-506 13-196 (201)
71 3ltm_A Alpha-REP4; protein eng 99.1 1.7E-09 5.9E-14 96.4 16.8 185 223-510 21-205 (211)
72 4db6_A Armadillo repeat protei 99.1 2.9E-09 9.8E-14 95.0 17.5 191 94-291 13-209 (210)
73 2iw3_A Elongation factor 3A; a 99.1 1.1E-08 3.8E-13 108.8 24.5 263 238-553 31-328 (986)
74 3ltm_A Alpha-REP4; protein eng 99.1 2.6E-09 8.9E-14 95.3 16.4 191 9-253 16-206 (211)
75 3gjx_A Exportin-1; transport, 99.1 2.5E-06 8.5E-11 92.9 42.3 194 364-559 492-711 (1073)
76 4db6_A Armadillo repeat protei 99.1 5.4E-09 1.8E-13 93.1 18.1 193 223-508 14-209 (210)
77 2db0_A 253AA long hypothetical 99.1 1.7E-07 5.7E-12 76.5 24.4 214 179-507 31-245 (253)
78 3ltj_A Alpharep-4; protein eng 99.1 8.6E-09 2.9E-13 91.1 17.7 183 15-248 14-196 (201)
79 1xqr_A HSPBP1 protein; armadil 98.9 1.9E-08 6.7E-13 93.5 15.9 175 368-550 57-239 (296)
80 2db0_A 253AA long hypothetical 98.9 1.4E-06 4.6E-11 71.3 22.8 159 130-310 31-190 (253)
81 3a6p_A Exportin-5; exportin-5, 98.9 1E-05 3.4E-10 90.8 38.6 471 16-531 93-682 (1204)
82 3nmw_A APC variant protein; AR 98.9 1.1E-07 3.7E-12 91.1 19.3 225 234-512 97-338 (354)
83 3tjz_B Coatomer subunit gamma; 98.9 1.1E-07 3.8E-12 89.8 18.2 317 91-503 24-348 (355)
84 4ady_A RPN2, 26S proteasome re 98.9 3.8E-06 1.3E-10 88.5 31.0 311 131-547 392-717 (963)
85 4ady_A RPN2, 26S proteasome re 98.9 1.2E-05 4.2E-10 84.7 34.6 308 96-507 395-718 (963)
86 1xqr_A HSPBP1 protein; armadil 98.8 5.2E-07 1.8E-11 83.9 21.5 156 366-530 97-266 (296)
87 3nmw_A APC variant protein; AR 98.7 2.5E-06 8.4E-11 81.7 22.6 248 32-292 48-335 (354)
88 2of3_A ZYG-9; multifunctional 98.7 8.9E-07 3E-11 79.6 17.4 178 232-466 57-240 (266)
89 3tjz_B Coatomer subunit gamma; 98.6 2.8E-06 9.4E-11 80.3 19.5 291 84-458 59-349 (355)
90 4ffb_C Protein STU2; tubulin f 98.6 8.4E-07 2.9E-11 82.5 15.7 181 362-555 20-218 (278)
91 1vsy_5 Proteasome activator BL 98.5 3.6E-06 1.2E-10 91.0 19.3 450 46-549 461-966 (997)
92 2of3_A ZYG-9; multifunctional 98.5 3.3E-05 1.1E-09 69.4 21.9 192 9-216 31-243 (266)
93 3b2a_A TON_1937, putative unch 98.5 1.5E-05 5E-10 68.4 17.6 187 46-251 31-219 (265)
94 3oc3_A Helicase MOT1, MOT1; re 98.5 2.4E-06 8.2E-11 82.6 14.2 251 127-458 169-432 (800)
95 3b2a_A TON_1937, putative unch 98.4 0.00021 7.2E-09 61.4 24.1 221 179-457 32-256 (265)
96 1te4_A Conserved protein MTH18 98.4 4.1E-08 1.4E-12 79.8 1.3 121 387-546 10-130 (131)
97 4ffb_C Protein STU2; tubulin f 98.4 5.1E-06 1.7E-10 77.2 14.9 186 100-292 16-213 (278)
98 3oc3_A Helicase MOT1, MOT1; re 98.3 3.2E-05 1.1E-09 75.0 16.8 204 61-290 184-403 (800)
99 1te4_A Conserved protein MTH18 98.2 1.9E-06 6.6E-11 69.8 6.3 104 366-505 27-130 (131)
100 3grl_A General vesicular trans 98.1 0.0025 8.7E-08 64.1 27.8 319 96-462 24-394 (651)
101 3u0r_A Apoptosis inhibitor 5; 98.1 0.0064 2.2E-07 58.4 28.2 126 62-210 39-164 (507)
102 3grl_A General vesicular trans 98.0 0.0056 1.9E-07 61.7 28.4 155 127-292 17-196 (651)
103 1vsy_5 Proteasome activator BL 97.7 0.0027 9.1E-08 68.9 20.3 377 62-509 519-967 (997)
104 3l9t_A Putative uncharacterize 97.6 0.0033 1.1E-07 54.6 16.6 157 32-216 56-214 (240)
105 3tt9_A Plakophilin-2; cell adh 97.6 0.00027 9.1E-09 62.7 9.4 112 389-509 8-125 (233)
106 3l9t_A Putative uncharacterize 97.5 0.002 6.9E-08 55.9 13.6 146 93-260 71-217 (240)
107 4gmo_A Putative uncharacterize 97.4 0.2 6.7E-06 52.6 30.0 140 62-213 45-218 (684)
108 3tt9_A Plakophilin-2; cell adh 97.3 0.0085 2.9E-07 53.0 15.9 175 132-315 9-204 (233)
109 3u0r_A Apoptosis inhibitor 5; 97.3 0.14 4.7E-06 49.4 31.0 133 133-291 31-163 (507)
110 3gs3_A Symplekin, LD45768P; he 97.1 0.15 5.2E-06 45.5 22.9 188 66-258 30-251 (257)
111 1upk_A MO25 protein; transfera 97.0 0.2 7E-06 46.0 24.0 187 97-295 82-287 (341)
112 1vsy_4 Proteasome activator BL 97.0 0.37 1.3E-05 50.9 26.5 317 176-509 335-688 (799)
113 4gmo_A Putative uncharacterize 96.9 0.0052 1.8E-07 64.6 12.3 152 389-549 35-214 (684)
114 1lrv_A LRV, leucine-rich repea 96.7 0.0015 5.1E-08 58.3 5.0 186 100-458 57-242 (244)
115 4atg_A TAF6; transcription, TF 96.5 0.11 3.8E-06 43.9 14.9 143 374-522 28-177 (196)
116 3fga_B Serine/threonine-protei 96.0 1.1 3.8E-05 42.6 20.3 235 17-261 131-377 (403)
117 3gs3_A Symplekin, LD45768P; he 95.8 0.94 3.2E-05 40.4 18.1 146 93-251 12-174 (257)
118 3o2t_A Symplekin; heat repeat, 95.5 1.8 6.2E-05 41.0 25.6 192 68-264 42-270 (386)
119 1lrv_A LRV, leucine-rich repea 95.5 0.0085 2.9E-07 53.4 3.5 133 62-285 61-193 (244)
120 1vsy_4 Proteasome activator BL 95.4 3.3 0.00011 43.7 33.9 122 85-212 327-458 (799)
121 4atg_A TAF6; transcription, TF 95.2 1.2 4.3E-05 37.5 16.0 74 472-546 80-156 (196)
122 1w9c_A CRM1 protein, exportin 94.8 1.5 5.2E-05 40.2 16.2 182 367-552 45-248 (321)
123 2npp_B PP2A, B subunit, serine 94.6 3.5 0.00012 39.9 22.1 166 85-258 238-407 (449)
124 1upk_A MO25 protein; transfera 93.7 4.2 0.00014 37.4 18.0 181 61-252 88-285 (341)
125 3ldz_A STAM-1, signal transduc 93.6 0.93 3.2E-05 36.2 11.0 79 476-554 39-119 (140)
126 3s4w_B Protein FACD2, fanconi 92.6 7 0.00024 43.4 19.3 118 426-552 393-510 (1323)
127 1lsh_A Lipovitellin (LV-1N, LV 91.7 6.3 0.00022 43.4 18.0 174 48-252 391-578 (1056)
128 1lsh_A Lipovitellin (LV-1N, LV 91.0 22 0.00074 39.2 24.6 157 105-292 407-577 (1056)
129 1juq_A ADP-ribosylation factor 90.8 3.1 0.00011 34.4 11.2 77 432-512 49-132 (171)
130 3o2t_A Symplekin; heat repeat, 90.6 12 0.0004 35.5 27.0 243 13-270 23-319 (386)
131 3g2s_A C-terminal fragment of 90.4 2.9 9.9E-05 33.6 10.3 78 476-553 45-130 (149)
132 1x5b_A Signal transducing adap 90.2 1.8 6.3E-05 35.5 9.3 78 476-553 49-129 (163)
133 3ldz_A STAM-1, signal transduc 90.1 5 0.00017 31.9 11.5 86 388-484 41-132 (140)
134 3dad_A FH1/FH2 domain-containi 89.3 13 0.00045 34.2 17.6 149 97-253 122-289 (339)
135 3dad_A FH1/FH2 domain-containi 89.1 14 0.00047 34.1 17.8 149 136-292 123-287 (339)
136 1mhq_A ADP-ribosylation factor 89.0 3.1 0.00011 33.4 9.5 77 476-552 35-119 (148)
137 1juq_A ADP-ribosylation factor 88.4 4.4 0.00015 33.5 10.3 77 477-553 48-132 (171)
138 1mhq_A ADP-ribosylation factor 88.1 1.8 6.2E-05 34.8 7.6 77 130-212 37-119 (148)
139 1x5b_A Signal transducing adap 87.0 7.4 0.00025 31.8 10.8 77 432-512 51-129 (163)
140 3g2s_A C-terminal fragment of 86.3 11 0.00039 30.1 12.2 75 388-465 47-129 (149)
141 1ho8_A Vacuolar ATP synthase s 83.6 34 0.0012 33.3 28.7 116 44-164 73-201 (480)
142 4flb_A Regulation of nuclear P 83.4 14 0.00049 28.8 11.4 68 430-511 5-72 (132)
143 3jxy_A Alkylpurine DNA glycosy 83.2 23 0.00077 30.9 14.8 132 62-218 72-204 (232)
144 3zyq_A Hepatocyte growth facto 83.2 7.9 0.00027 33.7 9.8 78 477-554 43-123 (226)
145 3qml_C Protein SLS1, nucleotid 82.7 5.6 0.00019 35.9 8.7 148 131-290 22-188 (315)
146 3ebb_A Phospholipase A2-activa 80.7 34 0.0012 31.2 14.6 100 406-509 162-264 (304)
147 1w9c_A CRM1 protein, exportin 80.5 35 0.0012 31.3 21.8 116 394-509 124-249 (321)
148 4fu3_A Regulation of nuclear P 80.0 14 0.00048 29.0 9.5 65 433-511 7-71 (135)
149 3ebb_A Phospholipase A2-activa 79.8 14 0.00049 33.8 10.6 114 433-549 147-263 (304)
150 1dvp_A HRS, hepatocyte growth 79.0 13 0.00043 32.3 9.7 78 476-553 39-119 (220)
151 1elk_A Target of MYB1; superhe 79.0 19 0.00065 29.1 10.1 78 476-553 50-134 (157)
152 2npp_B PP2A, B subunit, serine 75.7 60 0.0021 31.4 23.2 95 407-510 299-401 (449)
153 1vdy_A Hypothetical protein (R 74.0 9.4 0.00032 30.1 6.6 40 127-166 45-84 (140)
154 3zyq_A Hepatocyte growth facto 73.5 24 0.00081 30.7 9.9 90 432-525 44-136 (226)
155 3s4w_B Protein FACD2, fanconi 73.5 1.2E+02 0.0041 33.9 24.4 113 126-250 395-507 (1323)
156 3fga_B Serine/threonine-protei 73.2 65 0.0022 30.6 28.5 112 406-522 265-380 (403)
157 2b6c_A Hypothetical protein EF 72.9 15 0.00052 31.8 8.5 89 364-465 103-191 (220)
158 1t06_A Hypothetical protein; s 72.3 17 0.00059 31.8 8.8 74 388-464 107-182 (235)
159 2fv2_A RCD1 required for cell 70.2 57 0.0019 28.7 14.1 185 15-209 3-224 (268)
160 2b6c_A Hypothetical protein EF 69.8 53 0.0018 28.2 14.1 129 62-216 66-195 (220)
161 1dvp_A HRS, hepatocyte growth 69.1 36 0.0012 29.3 10.1 90 432-525 41-133 (220)
162 3d9j_A RNA-binding protein 16; 68.5 37 0.0013 27.0 9.2 57 474-530 37-97 (145)
163 1vdy_A Hypothetical protein (R 67.3 44 0.0015 26.3 9.3 85 374-461 31-129 (140)
164 1sz9_A PCF11 protein; RNA poly 65.0 50 0.0017 26.1 11.6 74 474-547 38-112 (144)
165 1t06_A Hypothetical protein; s 63.1 6.5 0.00022 34.5 4.1 120 435-562 110-235 (235)
166 1elk_A Target of MYB1; superhe 62.6 59 0.002 26.2 12.3 91 388-485 52-149 (157)
167 1sz9_A PCF11 protein; RNA poly 59.0 65 0.0022 25.5 11.7 78 126-210 38-115 (144)
168 2jak_A Serine/threonine-protei 57.8 1.3E+02 0.0044 28.5 16.5 120 78-205 243-363 (392)
169 3jxy_A Alkylpurine DNA glycosy 56.8 97 0.0033 26.8 13.3 153 101-287 69-223 (232)
170 1ho8_A Vacuolar ATP synthase s 55.7 1.5E+02 0.0053 28.8 30.4 58 445-508 417-476 (480)
171 2nsz_A Programmed cell death p 55.2 70 0.0024 24.7 9.1 107 9-123 2-115 (129)
172 2fv2_A RCD1 required for cell 53.0 1.2E+02 0.0041 26.7 11.0 115 179-293 99-226 (268)
173 4f52_E Glomulin; cullin-ring E 44.5 2.6E+02 0.009 28.2 14.1 135 129-270 315-458 (596)
174 2ion_A PDCD4, programmed cell 44.1 1.2E+02 0.0041 24.2 9.1 107 9-123 4-117 (152)
175 3rru_A TOM1L1 protein; structu 43.8 1.1E+02 0.0039 24.3 8.1 106 371-485 37-149 (152)
176 2km4_A Regulator of TY1 transp 43.7 1.2E+02 0.004 23.9 10.7 65 433-511 6-72 (142)
177 3ut4_A CTHE_2751, putative unc 43.6 1.1E+02 0.0039 23.7 11.7 101 85-207 23-128 (134)
178 3rru_A TOM1L1 protein; structu 43.2 42 0.0014 26.9 5.4 101 101-212 28-133 (152)
179 2rg8_A Programmed cell death p 40.5 1.5E+02 0.005 24.1 8.9 102 14-124 10-117 (165)
180 3l3f_X Protein DOA1, DOA1/UFD3 38.5 2.5E+02 0.0085 26.2 12.4 142 389-549 165-326 (362)
181 4flb_A Regulation of nuclear P 37.3 1.4E+02 0.0048 22.9 11.0 101 97-209 12-112 (132)
182 3d9j_A RNA-binding protein 16; 37.2 1.5E+02 0.0052 23.3 11.4 89 370-462 24-119 (145)
183 3l3f_X Protein DOA1, DOA1/UFD3 36.3 1.3E+02 0.0045 28.1 8.3 133 364-508 176-326 (362)
184 3pst_A Protein DOA1; protein d 34.8 1.7E+02 0.0059 27.9 9.0 133 364-508 239-389 (425)
185 3qml_C Protein SLS1, nucleotid 33.8 1.6E+02 0.0056 26.6 8.1 138 406-548 42-188 (315)
186 3gae_A Protein DOA1; UFD3, CDC 30.5 2.8E+02 0.0095 24.3 12.0 138 364-509 67-218 (253)
187 2zu6_B Programmed cell death p 28.9 2.8E+02 0.0095 25.2 9.2 109 9-123 161-274 (307)
188 2rg8_A Programmed cell death p 27.0 2.5E+02 0.0085 22.7 8.2 102 388-508 11-115 (165)
189 3gae_A Protein DOA1; UFD3, CDC 26.3 2E+02 0.0069 25.2 7.5 100 62-161 101-218 (253)
190 3eg5_B Protein diaphanous homo 23.0 4.2E+02 0.014 24.9 9.6 100 193-292 133-247 (383)
191 1zoq_C CREB-binding protein, i 22.2 1.4E+02 0.0046 17.9 3.6 31 17-50 3-33 (47)
192 3eiq_C Programmed cell death p 20.6 4.4E+02 0.015 24.5 9.0 109 9-123 212-325 (358)
193 4fu3_A Regulation of nuclear P 20.5 2.9E+02 0.0099 21.1 7.4 82 15-102 7-89 (135)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4e-59 Score=510.18 Aligned_cols=519 Identities=46% Similarity=0.817 Sum_probs=465.5
Q ss_pred CCCCCCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 5 VAWQPQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 5 ~~~~~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
|+|+|+++.+++|.++|.+++|||++ +|++|+++|++++++|+|..+|..++.+..+.++.+|++|++.|||.+.++|.
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~-~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTT-IQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHH-HHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCChhhHHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999 99999999999999999999999999853378999999999999999999999
Q ss_pred cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
.++++.+..||+.+++.+.++++.||+.++.+++.|++.++++.||++++.|.+.++++++.+|++++.+|+.+++..+.
T Consensus 82 ~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999887
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHH
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (562)
.+.+.. ....+..++|.+++++++++..||..|++++..++...+..+...++.+++.++..++++++++|..++++
T Consensus 162 ~~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDV---LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCS---SSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred Hhchhh---hcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 654321 12357889999999999999999999999999888776666777788889999998889999999999999
Q ss_pred HHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhh
Q 008533 245 FNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLV 324 (562)
Q Consensus 245 L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~ 324 (562)
|..+++.+++.+.+|++.+++.++..+++.++++|..|+++|..+++.+...+.+++++..++|.++..|.++++|.+++
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999999999999999999999999999999999999999998755566688999999999999999998888776
Q ss_pred hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCC
Q 008533 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDE 404 (562)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~ 404 (562)
+.|+++ | +++||....|++|.+|..+++.++...|+.+++.+++.+.+.+++++
T Consensus 319 ~~d~~e---------------------d---~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~-- 372 (852)
T 4fdd_A 319 KGDVEG---------------------G---SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE-- 372 (852)
T ss_dssp HC------------------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSS--
T ss_pred cCCccc---------------------c---cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC--
Confidence 543211 1 11122225799999999999999999999999999999999999888
Q ss_pred CchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 405 AWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 405 ~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
|+.|++|+.++|.+++++.+.+.++++.++|.+++.+.|+++.||.+|+|++|+++.+++.. ....++..+++.+
T Consensus 373 -~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~~ll~~L 447 (852)
T 4fdd_A 373 -WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ----PPDTYLKPLMTEL 447 (852)
T ss_dssp -HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS----CTTTTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999988642 3578899999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcc
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQV 558 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 558 (562)
+..+.|+++.||..|+++|+++++.+++.+.||++.+++.|+..+...+.+....++++++.++.++|+.+.+|
T Consensus 448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~ 521 (852)
T 4fdd_A 448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP 521 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccH
Confidence 99999999999999999999999999888999999999999999998888888899999999999999876543
No 2
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=9.3e-47 Score=416.10 Aligned_cols=509 Identities=14% Similarity=0.189 Sum_probs=398.4
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc------cC
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK------SM 86 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~------~l 86 (562)
+.+++.++|.+++|||++ .| |+++|++++++|+|+..|++++.+. +.+..+|++|++.|||.+.++|. .+
T Consensus 3 d~~~l~~~L~~~~spd~~-~r--Ae~~L~~~~~~p~~~~~L~~il~~~-~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTA-KT--SERNLRQLETQDGFGLTLLHVIAST-NLPLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHHHTTSGGGH-HH--HHHHHHHHHTSTTHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred cHHHHHHHHHHhcCCCHH-HH--HHHHHHHhhcCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCCCcccCCCC
Confidence 457899999999999999 88 9999999999999999999999853 67899999999999999999998 78
Q ss_pred ChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcc
Q 008533 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~ 166 (562)
+++.+..||+.+++.+.+++..||+.++.+|+.|+..++++.||++++.|.+.++++++..+.+++.++..+++.+...+
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998777999999999999999999889999999999999999888999999999999999775432
Q ss_pred ccc-CCCCCcchhHhhHHHHHH-------hhcCCCH---------HHHHHHHHHHHHHHh-hchhhHHhchHHHHHHHhh
Q 008533 167 DSD-VPGLAECPINIFLPRLLQ-------FFQSPHT---------SLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFL 228 (562)
Q Consensus 167 ~~~-~~~~~~~~~~~il~~l~~-------~l~~~~~---------~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~ 228 (562)
.+. ...-+...+..+++.+++ +++++.. +++..+++++..+.. ..|+.+.+++..+++.+.+
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~ 238 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK 238 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 210 000000123334443333 2444321 334457777766543 3466666667777665554
Q ss_pred hccC------C--C-------HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcC-----CCChhHHHHHhhhHHH
Q 008533 229 LSND------P--S-------AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNK-----DTDDDVALEACEFWHS 288 (562)
Q Consensus 229 ~~~~------~--~-------~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~-----~~~~~v~~~a~~~l~~ 288 (562)
.+.. . + ..+++.++++|..+++.+++.+.+|++.+++.++..+. ..++.++..+++||.+
T Consensus 239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 3311 1 1 35789999999999999999999999999998887643 4567899999999999
Q ss_pred hhccccchhhHH--hhhhHHH-HHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchh
Q 008533 289 YFEAQLPHENLK--EFLPRLV-PVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVW 365 (562)
Q Consensus 289 ~~~~~~~~~~~~--~~l~~l~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~ 365 (562)
+++.+.....++ +++..++ +.+++.|+.+++|.+.|++||++ |++ ++.| .++.|
T Consensus 319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e-------~i~-----------~d~e-----~~d~~ 375 (960)
T 1wa5_C 319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE-------YIR-----------RDLE-----GSDTD 375 (960)
T ss_dssp HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHH-------HHH-----------HHHH-----C----
T ss_pred HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHH-------HHH-----------hccC-----ccccc
Confidence 988744455555 8899999 68889999999998888776654 332 1111 11246
Q ss_pred cHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc------CCCCCCchhHHHHHHHHHHHhhcc---hhhhhh-----hH
Q 008533 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS------ASGDEAWKDREAAVLALGAIAEGC---IKGLYP-----HL 431 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~------~~~~~~~~~r~aal~~l~~i~~~~---~~~~~~-----~l 431 (562)
++|.+|..+++.++..+++.+++.+++++.+.++ +++ |+.|++|++++|+++++. ...... .+
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~---w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKN---WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----C---HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchh---HHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 8999999999999999998889999999988887 556 999999999999998753 211221 23
Q ss_pred HH-HHHHHhhhcCCC---ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 432 SE-IVAFLIPLLDDK---FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 432 ~~-~~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
.. +...+++.+.|+ +|.||.+|+|++|++++++ ..+++.++++.+++.|.|++++||.+||.||.+|+
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--------~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--------TKAQLIELMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--------CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--------CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 33 234566667776 9999999999999999975 25689999999999999989999999999999999
Q ss_pred HH-----------ccccccccHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 508 EE-----------AAEELAPRLEIILQHLMMAFGKY-----QRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 508 ~~-----------~~~~~~~~l~~il~~L~~~l~~~-----~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+. .++.+.||++.+++.|+.+++.. +......++++|+.++.+.++++ .||+
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~-~p~~ 592 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-QPLF 592 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-GGGH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh-hhHH
Confidence 84 24678999999999999999985 12245689999999999998655 7875
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.6e-45 Score=401.29 Aligned_cols=491 Identities=19% Similarity=0.313 Sum_probs=418.4
Q ss_pred HHHHHHHHHh-cCCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-----------
Q 008533 15 NEICRLLEQQ-ISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR----------- 80 (562)
Q Consensus 15 ~~l~~~l~~~-~s~d~~~~r~~A~~~L~~~~~~--~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~----------- 80 (562)
+++.++|.++ .|||++ +|++|+++|++++++ |+|+..|++++.+. +.++.+|++|+++|||.+.
T Consensus 4 ~~l~~~L~~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~-~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~ 81 (861)
T 2bpt_A 4 AEFAQLLENSILSPDQN-IRLTSETQLKKLSNDNFLQFAGLSSQVLIDE-NTKLEGRILAALTLKNELVSKDSVKTQQFA 81 (861)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHTTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcccCcCHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHhhccCcChHHHHHHH
Confidence 5789999999 999999 999999999998864 89999999999862 4689999999999999974
Q ss_pred Hhhcc-CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccC-ChhHHhHHHHHHHH
Q 008533 81 TAYKS-MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN-DINHMEGAMDALSK 157 (562)
Q Consensus 81 ~~w~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~ 157 (562)
+.|.. ++++.+..||+.+++.+.++++.+|+.++.+++.|+..+++ +.||++++.|.+.++++ ++..|++++.+++.
T Consensus 82 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~ 161 (861)
T 2bpt_A 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161 (861)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHH
T ss_pred HhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34786 99999999999999999999999999999999999999866 69999999999999998 99999999999999
Q ss_pred HhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchhhHHh--chHHHHHHHhhhccCC
Q 008533 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFV--SMDQYLQGLFLLSNDP 233 (562)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~ 233 (562)
+++.++.... .+......+++.+.+++.++ +..||..|++++..++.+....+.. ....+++.+...+.+.
T Consensus 162 l~~~~~~~~~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 162 MCESADPQSQ-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHTSSTTSS-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred HHHcCChhhh-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCC
Confidence 9997664321 12346788999999999987 8899999999999988766543321 1234677777777788
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc---------------chh
Q 008533 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL---------------PHE 297 (562)
Q Consensus 234 ~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~---------------~~~ 297 (562)
++++|..++++|..+++.+++.+.+|+. .+++.++..+.+.++++|..++++|..+++... ..+
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHH
Confidence 8999999999999999999999999999 999999999999999999999999999987521 112
Q ss_pred hHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHH
Q 008533 298 NLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDV 377 (562)
Q Consensus 298 ~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~ 377 (562)
.+++++..++|.++..|...++ + ++ ++.|++|.++..+++.
T Consensus 317 ~~~~~~~~il~~ll~~l~~~~~-----------------------------------d-~~---d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 317 FALSSIKDVVPNLLNLLTRQNE-----------------------------------D-PE---DDDWNVSMSAGACLQL 357 (861)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-----------------------------------C--C---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----------------------------------c-cc---cccCcHHHHHHHHHHH
Confidence 3566778888888877753211 0 11 1247899999999999
Q ss_pred HHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHH
Q 008533 378 LSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWT 456 (562)
Q Consensus 378 l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~ 456 (562)
++..+|+.+++.+++.+.+.+++++ |+.|++|+.+++.+++++. +.+.++++.+++.+++.+.|+++.||.+++|+
T Consensus 358 l~~~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~ 434 (861)
T 2bpt_A 358 FAQNCGNHILEPVLEFVEQNITADN---WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWC 434 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHccHhHHHHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999889999999999999888 9999999999999999885 77789999999999999999999999999999
Q ss_pred HHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc----ccccccHHHHHHHHHHHHhhh
Q 008533 457 LSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA----EELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 457 l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~----~~~~~~l~~il~~L~~~l~~~ 532 (562)
+|+++..++..+ ...++++.+++.++..++|+ ++||..|++++..+++.++ ..+.||++.+++.|+..+...
T Consensus 435 l~~l~~~~~~~~---~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~ 510 (861)
T 2bpt_A 435 IGRIADSVAESI---DPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI 510 (861)
T ss_dssp HHHHHHHHGGGS---CTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred HHHHHHHhhhhc---CCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence 999999886421 13678999999999999986 9999999999999999875 678899999999999999854
Q ss_pred h--hhHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 533 Q--RRNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 533 ~--~~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
+ ...+..++++++.++...|.+. .||
T Consensus 511 d~~~~vr~~a~~al~~l~~~~~~~~-~~~ 538 (861)
T 2bpt_A 511 DNEFNARASAFSALTTMVEYATDTV-AET 538 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHCCGGG-HHH
T ss_pred CcchHHHHHHHHHHHHHHHHcchhh-HHH
Confidence 3 4566689999999999988653 444
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=3.1e-43 Score=387.51 Aligned_cols=483 Identities=23% Similarity=0.371 Sum_probs=409.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC--CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-----------HHh
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQF--PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNL-----------RTA 82 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~--~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i-----------~~~ 82 (562)
+|.++|..+.|||++ +|++|+++|+++..+ |+|+..|+.++.+. +.++.+|++|+++||+.+ .++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~-~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLANP-GNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhcChhhHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 578999999999999 999999999998865 88999999999862 468999999999999987 467
Q ss_pred hccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHh
Q 008533 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (562)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~ 159 (562)
|..++++.+..||+.+++.+.++++.+ +.++.+++.|+..+++ +.||++++.+.+.++++ ++.+|.+++.+++.++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888 9999999999998755 89999999999999998 8999999999999999
Q ss_pred hcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchhhHHhc--hHHHHHHHhhhccCCCH
Q 008533 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (562)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 235 (562)
+.+.... +......+++.+.+++.++ +..+|..|++++..++.+.+..+... ...+++.+...+.+.++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCHHH-------HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCHhh-------HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 8763211 1246788999999999887 68999999999999988765443211 12367777777778889
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccc-------------------cc
Q 008533 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (562)
Q Consensus 236 ~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-------------------~~ 295 (562)
++|..++++|..++..+++.+.+|+. .+++.++....+.++++|..++++|..+++.. ..
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 99999999999999999999999999 99999999888889999999999999988641 11
Q ss_pred hhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHH
Q 008533 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (562)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (562)
....++++..+++.++..+...++ + ++ +..|++|.++..++
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~-----------------------------------d-~~---~~~~~~r~~a~~~l 352 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-DD---DDDWNPCKAAGVCL 352 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-CC---TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccc-----------------------------------c-cc---ccccHHHHHHHHHH
Confidence 234455667777777766642110 0 11 12589999999999
Q ss_pred HHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHH
Q 008533 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (562)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~ 454 (562)
..++..+|+.+++.+++.+.+.+++++ |++|++|+.+++.+++++. +.+.++++.++|.+++.+.|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~l~~l~~~l~~~~---~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHCcHhhHHHHHHHHHHHccCCC---hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999998889999999999999888 9999999999999999886 667789999999999999999999999999
Q ss_pred HHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc--------------ccccccHHH
Q 008533 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--------------EELAPRLEI 520 (562)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~--------------~~~~~~l~~ 520 (562)
+++++++..++... ...++++.+++.++..+.++ ++||..|+++|+.+++.++ +.+.||++.
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (876)
T 1qgr_A 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505 (876)
T ss_dssp HHHHHHHHHCGGGT---SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHH
T ss_pred HHHHHHHHhCchhc---ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHH
Confidence 99999999876421 14688999999999999985 9999999999999998865 458899999
Q ss_pred HHHHHHHHHhhhh--hhHH-HHHHHHHHHHHHHHhhh
Q 008533 521 ILQHLMMAFGKYQ--RRNL-RIVYDAIGTLADAVGFE 554 (562)
Q Consensus 521 il~~L~~~l~~~~--~~~~-~~~~~~l~~l~~~~~~~ 554 (562)
+++.|+..+...+ ...+ ..++++++.++..+|.+
T Consensus 506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 542 (876)
T 1qgr_A 506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD 542 (876)
T ss_dssp HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST
T ss_pred HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh
Confidence 9999999998753 2334 48999999999988864
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=4e-43 Score=357.89 Aligned_cols=419 Identities=23% Similarity=0.365 Sum_probs=354.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-----------
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ--FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA----------- 82 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~--~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~----------- 82 (562)
+|.++|.+++|||++ +|++|+++|++++. .|+|+..|++++.+ .+.++.+|++|+++||+.+.++
T Consensus 2 ~l~~~L~~~~s~d~~-~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 2 ELITILEKTVSPDRL-ELEAAQKFLERAAVENLPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp CHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhChHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 578999999999999 99999999999886 58999999999986 2568999999999999998544
Q ss_pred hccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccC--ChhHHhHHHHHHHHHh
Q 008533 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSN--DINHMEGAMDALSKIC 159 (562)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~--~~~~~~~al~~l~~i~ 159 (562)
|..++++.+..||+.+++.+.++++.+ +.++.+++.|+..+++ +.||+++|.|.+.++++ ++.+|.+++.+|+.++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999999888888 9999999999999855 69999999999999998 8999999999999999
Q ss_pred hcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchhhHHhc--hHHHHHHHhhhccCCCH
Q 008533 160 EDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVS--MDQYLQGLFLLSNDPSA 235 (562)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~ 235 (562)
+...... +......+++.+.++++++ +..||..|++++..++.+..+.+... ...+++.+.....+.++
T Consensus 159 ~~~~~~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 159 QDIDPEQ-------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHSCGGG-------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhCCchh-------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9763221 1246788999999999998 78999999999999877654333211 12346666667778889
Q ss_pred HHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccc-------------------cc
Q 008533 236 EVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-------------------LP 295 (562)
Q Consensus 236 ~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-------------------~~ 295 (562)
++|..++++|..+++.+++.+.+|+. .+++.++..+++.++++|..++++|..+++.. ..
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 99999999999999999999999999 99999998888999999999999999998752 22
Q ss_pred hhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHH
Q 008533 296 HENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAAL 375 (562)
Q Consensus 296 ~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l 375 (562)
...+++++..++|.++..+...++ + + ++..|++|.+|..++
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~-----------------------------------d-~---~~~~~~~r~~a~~~L 352 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDE-----------------------------------N-D---DDDDWNPCKAAGVCL 352 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCS-----------------------------------S-C---CTTCCSHHHHHHHHH
T ss_pred HHHHHHHhhhccHHHHHHHHhccc-----------------------------------c-c---ccccchHHHHHHHHH
Confidence 345566778888888776642110 0 1 112589999999999
Q ss_pred HHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHH
Q 008533 376 DVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISC 454 (562)
Q Consensus 376 ~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~ 454 (562)
+.++..+|+.+++.+++.+.+.+++++ |+.|++|+.++|.+++++. +.+.++++.++|.+++.++|+++.||.+|+
T Consensus 353 ~~l~~~~~~~~~~~~~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~ 429 (462)
T 1ibr_B 353 MLLATCCEDDIVPHVLPFIKEHIKNPD---WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA 429 (462)
T ss_dssp HHHHHHTTTTHHHHHHHHHHHHTTCSS---HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999998889999999999999888 9999999999999999886 566788899999999999999999999999
Q ss_pred HHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc
Q 008533 455 WTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL 489 (562)
Q Consensus 455 ~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 489 (562)
|++|+++..+++.+ ...+|++++++.++.+|+
T Consensus 430 ~~l~~~~~~~~~~~---~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 430 WTVGRICELLPEAA---INDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHGGGGC---CSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHhccccc---ccHHHHHHHHHHHHHHhc
Confidence 99999999986421 135799999999987664
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=8.3e-42 Score=379.71 Aligned_cols=514 Identities=15% Similarity=0.238 Sum_probs=391.0
Q ss_pred HhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhh
Q 008533 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (562)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~ 90 (562)
|..++++.+++..+++|+++ .|++|+++|++++++|+++..+..++.+ +.++.+|++|++.||+.+.++|..++++.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~-~r~~Ae~~L~~~~~~p~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHSTTGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cccHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 46789999999999999999 9999999999999999999999999986 77999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCC---------chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhc
Q 008533 91 QQYIKSELLPCLGAA---------DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (562)
Q Consensus 91 ~~~i~~~ll~~l~~~---------~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 161 (562)
+..||+.+++.+.+. +..||++++.+++.|++.++++.||++++.+.+.++ +++..+..++.+|..++++
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 999999999988642 378999999999999999988999999999999997 5667788999999999887
Q ss_pred chhcccccCC--------CCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhhHH--h-------------
Q 008533 162 IPQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSALF--V------------- 217 (562)
Q Consensus 162 ~~~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~~~--~------------- 217 (562)
....-..... ..+......+++.+.+++++ ++..++..+++|+..++.+.+.... +
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 6532100000 00112344455555666644 3567888888888888777652110 0
Q ss_pred ----------------------------ch----HHHHHHHhh--------------hccCCCHHHHHHHHHHHHHHHhh
Q 008533 218 ----------------------------SM----DQYLQGLFL--------------LSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 218 ----------------------------~~----~~~l~~l~~--------------~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
.+ +.++..+.. ...+.+.+....+++.+..+.+.
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 00 001111100 01122344445556655555443
Q ss_pred Cccc------hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhc----cccchhhHHhhhhHHHHHHHhhcccChhhH
Q 008533 252 RPSF------LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE----AQLPHENLKEFLPRLVPVLLSNMIYADDDE 321 (562)
Q Consensus 252 ~~~~------~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~----~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~ 321 (562)
+.+. +.+++..++++++......+++++..+++||..+++ .+......++++..+++.++..|...+ |.
T Consensus 328 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~e-d~ 406 (1049)
T 3m1i_C 328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPE-EV 406 (1049)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCT-TC
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCc-ce
Confidence 2222 356677788888888777888999999999999988 444567788999999999999998754 33
Q ss_pred hhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCC
Q 008533 322 SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSAS 401 (562)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~ 401 (562)
++.++++. +++| + +.+| .+.|+.|+++.++|..++...+..+++.+.+.+.+.++++
T Consensus 407 ~~~~dd~~-------e~~r-----------~--~~~d---~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 407 LVVENDEG-------EIVR-----------E--FVKE---SDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp CEEECTTS-------CEEE-----------C--SSCC---HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS
T ss_pred eeeeCCCC-------cchH-----------h--hhcc---chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC
Confidence 33222211 1222 0 0111 2357889999999999998888888899999999888642
Q ss_pred CCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchh
Q 008533 402 GDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (562)
Q Consensus 402 ~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (562)
..+|+.|+++++++|++++++.+.. ..+++++++.+..... |++|.||..++|++|++++++.. +.+
T Consensus 464 -~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~------~~~ 536 (1049)
T 3m1i_C 464 -EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HWN 536 (1049)
T ss_dssp -SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH------CHH
T ss_pred -CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh------HHH
Confidence 1239999999999999998876543 3557888887776432 46788888999999999999864 468
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccc--------ccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELA--------PRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~--------~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l 547 (562)
+++.+++.++..+.+++++|+.+||.+|.++++.++..+. ||++.+++.+..++...+......++++++.+
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~i 616 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876664 99999999999999987777778999999999
Q ss_pred HHHHhh-hhhccc
Q 008533 548 ADAVGF-ELNQVL 559 (562)
Q Consensus 548 ~~~~~~-~~~~~~ 559 (562)
+.+.++ +...||
T Consensus 617 i~~~~~~~~~~~~ 629 (1049)
T 3m1i_C 617 ISEERSVAERNRL 629 (1049)
T ss_dssp HHTCCSHHHHHHH
T ss_pred HHcCCCHHHHHHH
Confidence 998883 444444
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.9e-40 Score=365.41 Aligned_cols=502 Identities=15% Similarity=0.184 Sum_probs=381.7
Q ss_pred hhHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhh
Q 008533 12 QGFNEICRLLEQ-QISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (562)
Q Consensus 12 ~~~~~l~~~l~~-~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~ 90 (562)
.+++++.+++.. ..++|++ .|++|+++|++++++|++|..+..++.+ +.++.+|++|++.||+.|+++|..++++.
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~-~r~~A~~~L~~~~~~p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 97 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIE-NKNLAQKWLMQAQVSPQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQ 97 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGG
T ss_pred hhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHhcCHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHH
Confidence 356788888888 4568988 9999999999999999999999999975 78999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc-----CChhHHhHHHHHHHHHhhcc
Q 008533 91 QQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-----NDINHMEGAMDALSKICEDI 162 (562)
Q Consensus 91 ~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~-----~~~~~~~~al~~l~~i~~~~ 162 (562)
+..||+.+++.+.+ .++.||++++.+++.|++.++++.||++++.+.+.+++ +++..+..++.+|..++++.
T Consensus 98 ~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~ 177 (963)
T 2x19_B 98 YESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF 177 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHH
Confidence 99999999998865 36899999999999999999888899999999999976 36678899999999998754
Q ss_pred hhc-cc----ccCCCCCcchhHhhHHHHHHhhcCCC--HHHHHHHHHHHHHHHh--------------------------
Q 008533 163 PQV-LD----SDVPGLAECPINIFLPRLLQFFQSPH--TSLRKLSLGSVNQFIM-------------------------- 209 (562)
Q Consensus 163 ~~~-~~----~~~~~~~~~~~~~il~~l~~~l~~~~--~~vr~~al~~l~~~~~-------------------------- 209 (562)
... .. ......+......+++.+.+.+++.. ..++..+++|+..++.
T Consensus 178 ~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~ 257 (963)
T 2x19_B 178 QTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFD 257 (963)
T ss_dssp TTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHH
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHH
Confidence 221 10 01111222345566666666665532 2366666666655443
Q ss_pred -----------hc-hhhHHhchHHHHHHHhhh-------ccCCCHHHHHHHHHHHHHHHhhCccchh------hhHHHHH
Q 008533 210 -----------LM-PSALFVSMDQYLQGLFLL-------SNDPSAEVRKLVCAAFNLLIEVRPSFLE------PHLRNLF 264 (562)
Q Consensus 210 -----------~~-~~~~~~~~~~~l~~l~~~-------~~~~~~~~~~~~~~~L~~l~~~~~~~~~------~~l~~i~ 264 (562)
.. ++...+.+..+++.++.. ....|.+....+++.+..+++.++..+. +++..++
T Consensus 258 ~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l 337 (963)
T 2x19_B 258 SSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALV 337 (963)
T ss_dssp HHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHH
Confidence 10 000111122223322221 1234556677788888888776665543 5667788
Q ss_pred HHHHhhcCC-----CChhHHHHHhhhHHHhhcc---------ccchhhHHhhhhHHHHHHHhhcccChhhH-hhhhhhhc
Q 008533 265 EYMLQVNKD-----TDDDVALEACEFWHSYFEA---------QLPHENLKEFLPRLVPVLLSNMIYADDDE-SLVEAEED 329 (562)
Q Consensus 265 ~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~---------~~~~~~~~~~l~~l~~~l~~~l~~~~~~~-~~~~~~~~ 329 (562)
++++..... .+++++..+++||..+++. +.....+++++..+++.++..|...+++. +.|++
T Consensus 338 ~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~--- 414 (963)
T 2x19_B 338 NMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS--- 414 (963)
T ss_dssp HHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH---
T ss_pred HHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh---
Confidence 888876654 4677899999999998873 12345567889999999988886543321 11110
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHH----cCCCCCC
Q 008533 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKL----SASGDEA 405 (562)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l----~~~~~~~ 405 (562)
| +.+.....|+.+.+++..++...|+.+++.+++.+.+.+ .+.+
T Consensus 415 ---------------------------d--e~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~--- 462 (963)
T 2x19_B 415 ---------------------------D--EKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYS--- 462 (963)
T ss_dssp ---------------------------H--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCC---
T ss_pred ---------------------------h--HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCc---
Confidence 0 111112568889999999999999888899999998888 4555
Q ss_pred chhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
|+.|+++++++|.+++++.+...++++.+++.+ ..+.+++|.||.+++|++|++++++.. ..++++.+++.++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~------~~~~l~~vl~~l~ 535 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLAD------HPVMINSVLPLVL 535 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHH------CHHHHTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHH
Confidence 999999999999999998766667888888854 455667999999999999999999864 3578999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 486 KRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 486 ~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
..|++ +.|+..||.+|.++++.++..+.||++.+++.|..++... +...+..++++++.++.+++.+.+.||+
T Consensus 536 ~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~ 610 (963)
T 2x19_B 536 HALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL 610 (963)
T ss_dssp HHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99975 8999999999999999999999999999999999999863 3456679999999999888745556664
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-40 Score=368.72 Aligned_cols=500 Identities=12% Similarity=0.163 Sum_probs=362.3
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~ 92 (562)
.++++.+++..+.+||++ .|++|+++|++++++|++|..+..+|.. +.++.+|++|++.||+.++++|..++++.+.
T Consensus 5 d~~~l~~~l~~~~~~d~~-~r~~A~~~L~~~~~~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 5 DIARLEEAVVSFYRSNSQ-NQAITHEWLTDAEASPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp ------CTHHHHHTSTTT-C----CHHHHHTTTSTHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred hHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 356788888888899999 9999999999999999999999999976 7899999999999999999999999999999
Q ss_pred HHHHHHhhhhhC---CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccC------ChhHHhHHHHHHHHHhhcch
Q 008533 93 YIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSN------DINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 93 ~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~------~~~~~~~al~~l~~i~~~~~ 163 (562)
.||+.+++.+.+ .+..||++++.+++.|++.+++ .||++++.+.+.++++ ++..+..++.+|..++++..
T Consensus 82 ~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 82 ELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999998864 3689999999999999999987 9999999999999875 56789999999999997643
Q ss_pred hcccccCC----CCCcchhHhhHHHHHHhhcCC-C-------HHHHHHHHHHHHHHHh--hchhh----H----H-----
Q 008533 164 QVLDSDVP----GLAECPINIFLPRLLQFFQSP-H-------TSLRKLSLGSVNQFIM--LMPSA----L----F----- 216 (562)
Q Consensus 164 ~~~~~~~~----~~~~~~~~~il~~l~~~l~~~-~-------~~vr~~al~~l~~~~~--~~~~~----~----~----- 216 (562)
..-....+ ..+...+..+++.+.+.+++. + ..++..+++|+..++. ++|.. + .
T Consensus 161 ~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~L~~~ 240 (971)
T 2x1g_F 161 VIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHK 240 (971)
T ss_dssp HCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHhhhhh
Confidence 21100000 001123445555555555431 1 2789999999988776 33311 0 0
Q ss_pred -----------------------------------------hchHHHHHHHhh-------hccCCC---HHHHHHHHHHH
Q 008533 217 -----------------------------------------VSMDQYLQGLFL-------LSNDPS---AEVRKLVCAAF 245 (562)
Q Consensus 217 -----------------------------------------~~~~~~l~~l~~-------~~~~~~---~~~~~~~~~~L 245 (562)
+.+..+++.+.. ...+.| ++....+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 001111222221 113334 36777788888
Q ss_pred HHHHhhCccchh-----------hhHHHHHHHHHhhcC-----CCChhHHHHHhhhHHHhhcc----------ccchhhH
Q 008533 246 NLLIEVRPSFLE-----------PHLRNLFEYMLQVNK-----DTDDDVALEACEFWHSYFEA----------QLPHENL 299 (562)
Q Consensus 246 ~~l~~~~~~~~~-----------~~l~~i~~~~~~~~~-----~~~~~v~~~a~~~l~~~~~~----------~~~~~~~ 299 (562)
..+++.+...+. +++..+++.++..+. ..+++++..+++||..+++. +.....+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 888876665543 566677787777553 35788999999999998762 1123556
Q ss_pred HhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHH
Q 008533 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (562)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (562)
++++..+++.++..+...+++ + ++ +++.+|.+...+.|+++.+++..++
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~-~-~~-----------------------------~~d~~e~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEK-S-LA-----------------------------KWSSDDLECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTT-T-TS-----------------------------CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcc-c-cc-----------------------------ccCHhHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998877543321 1 10 0011112233478999999999999
Q ss_pred hhhccchhhhhHHHHHHHHcC-----CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC--CCChhHHHH
Q 008533 380 NVFGDEILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD--DKFPLIRSI 452 (562)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~--d~~~~vr~~ 452 (562)
..+|+.+++.+++.+.+.+++ .+ |+.|++++++++++++++.+...++++.+++ ++..+. |++|.||.+
T Consensus 450 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~---w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 450 DVLNDYILEILAAMLDEAIADLQRHPTH---WTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGT 525 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHCTTC---CHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHH
Confidence 999988889999999888765 45 9999999999999999998766788888888 555555 569999999
Q ss_pred HHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh
Q 008533 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY 532 (562)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~ 532 (562)
++|++|++++++.. ..+|++.+++.++..+ + ++|+.+|+.++.++++.++..+.||++.+++.|...+...
T Consensus 526 a~~~l~~~~~~l~~------~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 526 ALETMGSYCNWLME------NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHTHHHHC----------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhc------CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 99999999999863 3579999999999999 4 7899999999999999999999999999999999999984
Q ss_pred --hhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 533 --QRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 533 --~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+...+..++++++.++.+++.+.+.||+
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~ 626 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPEEIPKYL 626 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566779999999999987644445543
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=5.2e-38 Score=340.89 Aligned_cols=509 Identities=15% Similarity=0.250 Sum_probs=373.3
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhH
Q 008533 12 QGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQ 91 (562)
Q Consensus 12 ~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~ 91 (562)
-++++|.+++..+++|+++ .|++|+++|++++++|++|..+..+|.+ +.++.+|++|+..||+.|+++|..++++.+
T Consensus 13 ~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~ 89 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred CCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 4578889999999999999 9999999999999999999999999976 778999999999999999999999999999
Q ss_pred HHHHHHHhhhhhC----C-----chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcc
Q 008533 92 QYIKSELLPCLGA----A-----DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDI 162 (562)
Q Consensus 92 ~~i~~~ll~~l~~----~-----~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~ 162 (562)
..||+.+++.+.. + ++.+|++++.+++.|++.++++.||++++.+.+.++++ +..+..++.+|..+.++.
T Consensus 90 ~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV 168 (1023)
T 4hat_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEV 168 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 9999999998743 1 46788999999999999999999999999999999654 567888899998888875
Q ss_pred hhcccccCC--------CCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhh-------------------
Q 008533 163 PQVLDSDVP--------GLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA------------------- 214 (562)
Q Consensus 163 ~~~~~~~~~--------~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~------------------- 214 (562)
...-..+.. ..+....+.+++.+.+.+++ .++++...+++|+..++.|+|-.
T Consensus 169 ~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~ 248 (1023)
T 4hat_C 169 FDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSP 248 (1023)
T ss_dssp HTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCH
Confidence 431000000 00011223333333333332 34455555666666655554411
Q ss_pred ------------------------HHh----chHHHHHHH--------------hhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 215 ------------------------LFV----SMDQYLQGL--------------FLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 215 ------------------------~~~----~~~~~l~~l--------------~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
+.+ .+..+++.+ +....+.|.+.....+..+..+.+.+
T Consensus 249 ~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~ 328 (1023)
T 4hat_C 249 DTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1023)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 110 011111111 00011223555566677777777665
Q ss_pred ccchh--hhHHHH----HHHHHhhcCCCChhHHHHHhhhHHHhhcc----ccchhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 253 PSFLE--PHLRNL----FEYMLQVNKDTDDDVALEACEFWHSYFEA----QLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 253 ~~~~~--~~l~~i----~~~~~~~~~~~~~~v~~~a~~~l~~~~~~----~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
...+. +....+ +.+++.+....+.++...+++||..+++. +......++++.++++.++..|...++..
T Consensus 329 ~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~- 407 (1023)
T 4hat_C 329 RALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL- 407 (1023)
T ss_dssp GGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-
T ss_pred HHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-
Confidence 55443 232333 44666776777888989999999999874 11345678999999999999998876432
Q ss_pred hhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCC
Q 008533 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG 402 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 402 (562)
.++++.+ .++| +...|.|+...|. ...++|..++...++++++.+++.+.+.+.++
T Consensus 408 ive~d~~-------~~~~-------------e~~~d~d~~~~f~---~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~- 463 (1023)
T 4hat_C 408 VVENDEG-------EIVR-------------EFVKESDTIQLYK---SEREVLVYLTHLNVIDTEEIMISKLARQIDGS- 463 (1023)
T ss_dssp EEECTTS-------CEEE-------------CSSCCGGGHHHHH---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHSST-
T ss_pred cCCCCCc-------cHHH-------------HhccchHHHHHHH---HHHHHHHHHhccCHHHHHHHHHHHHHHHhcCC-
Confidence 1111100 0111 0001112222231 12278888888878888888999998887652
Q ss_pred CCCchhHHHHHHHHHHHhhcchhh-hhhhHHHHHHHHhhhcC-----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKG-LYPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ 476 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~-~~~~l~~~~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 476 (562)
..+|+.|+|+++++|+|++++.+. ..++++++++.++..+. |+.+.||.+++|++|++++++.. +.++
T Consensus 464 ~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~~~ 537 (1023)
T 4hat_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HWNF 537 (1023)
T ss_dssp TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc------cHHH
Confidence 133999999999999999998654 57899999999998875 46678899999999999999964 5789
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccc--------cccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--------~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (562)
++++++.++..+.+++++|+..||++|.++++.|+..+ .||++.+++.+.......+...+..+++++|+++
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999999998899999999999999999997655 5899999999999998877788889999999999
Q ss_pred HHHhhhh
Q 008533 549 DAVGFEL 555 (562)
Q Consensus 549 ~~~~~~~ 555 (562)
++++.+.
T Consensus 618 ~~~~~~~ 624 (1023)
T 4hat_C 618 SEERSVA 624 (1023)
T ss_dssp TTCCSHH
T ss_pred HhCCCHh
Confidence 9988654
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=4.1e-37 Score=333.99 Aligned_cols=494 Identities=15% Similarity=0.191 Sum_probs=360.4
Q ss_pred hhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChh
Q 008533 12 QGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPS 89 (562)
Q Consensus 12 ~~~~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~ 89 (562)
=+.+++.+++..+++| |++ .|++|+++|+++++.|++|..+..+|.+....++.+|++|+.+|++.|+ .++++
T Consensus 3 m~~~~v~~Al~~~~~p~sd~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e 77 (980)
T 3ibv_A 3 MSAQDVENAVEAALDPSVGPI-IKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNE 77 (980)
T ss_dssp CHHHHHHHHHHHHHCTTSCHH-HHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTT
T ss_pred CCHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChh
Confidence 3568899999888888 567 9999999999999999999999999986212389999999999999999 58888
Q ss_pred ----hHHHHHHHHhhhhhC-----CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCCh-hHHhHHHHHHHHHh
Q 008533 90 ----NQQYIKSELLPCLGA-----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI-NHMEGAMDALSKIC 159 (562)
Q Consensus 90 ----~~~~i~~~ll~~l~~-----~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~-~~~~~al~~l~~i~ 159 (562)
.+..||+.++..+.. .+..||++++.+++.++..+++..||++++.+.+.++++++ ......+.+|..+.
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~ 157 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIG 157 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence 999999999998863 46789999999999999999999999999999999987554 34445566666666
Q ss_pred hcchhcccccC----------CCCC-cchhHhhHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHH
Q 008533 160 EDIPQVLDSDV----------PGLA-ECPINIFLPRLLQFF----QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQ 224 (562)
Q Consensus 160 ~~~~~~~~~~~----------~~~~-~~~~~~il~~l~~~l----~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~ 224 (562)
+++.....+.. ...+ +..+..+.+.+++.+ ++.++.++..+++|+.+++.|+|..+..+ ..+++
T Consensus 158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ll~ 236 (980)
T 3ibv_A 158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EPCMN 236 (980)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HHHHH
T ss_pred HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-chHHH
Confidence 66543210000 0000 011223344444444 34688899999999999999987543322 34444
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHHhhC----------------------------------------------------
Q 008533 225 GLFLLSNDPSAEVRKLVCAAFNLLIEVR---------------------------------------------------- 252 (562)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~~~L~~l~~~~---------------------------------------------------- 252 (562)
.+++.+.+ +++|..+++||..++...
T Consensus 237 ~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~ 314 (980)
T 3ibv_A 237 LLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSD 314 (980)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44444432 344444444443332211
Q ss_pred cc--------chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc----cc---chhhHHhhhhHHHHHHHhhcccC
Q 008533 253 PS--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA----QL---PHENLKEFLPRLVPVLLSNMIYA 317 (562)
Q Consensus 253 ~~--------~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~----~~---~~~~~~~~l~~l~~~l~~~l~~~ 317 (562)
+. ...+++..++++++..+.++++++...+++||..+.+. +. .....++++..+++.++..|++.
T Consensus 315 ~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp 394 (980)
T 3ibv_A 315 PSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYD 394 (980)
T ss_dssp CC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCC
Confidence 10 11155667888888888899999999999999987754 11 24567789999999999999986
Q ss_pred hhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh----hhHHH
Q 008533 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP----TLMPV 393 (562)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~----~l~~~ 393 (562)
+++ .|+ + ++|+||+...-..|+.....++.++...++.++. .+.+.
T Consensus 395 ~d~--~~~---------------------------~-~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~ 444 (980)
T 3ibv_A 395 ESQ--EWD---------------------------D-DPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSS 444 (980)
T ss_dssp TTC--CCC---------------------------C-CSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred Ccc--ccc---------------------------c-ccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 543 121 1 1111222233357777775555554444456666 56666
Q ss_pred HHHHHc---CCCCCCchhHHHHHHHHHHHhhcchhhh------hhhHHHHHHHHhhhcC-----CCChhHHHHHHHHHHH
Q 008533 394 IQAKLS---ASGDEAWKDREAAVLALGAIAEGCIKGL------YPHLSEIVAFLIPLLD-----DKFPLIRSISCWTLSR 459 (562)
Q Consensus 394 l~~~l~---~~~~~~~~~r~aal~~l~~i~~~~~~~~------~~~l~~~~~~l~~~l~-----d~~~~vr~~a~~~l~~ 459 (562)
+.+.+. +.+ |+.+++++++++.+++++.... .++++.+++.+...+. ++||.||.++++++|+
T Consensus 445 l~~~l~~~~~~~---W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 445 LSTAATLSPENS---WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHTTSCHHHH---HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 666663 345 9999999999999999986321 2445566666666544 8899999999999999
Q ss_pred hHHHHhhhcCCCcchhhHHHHHHHHHH--HhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh----h
Q 008533 460 FSKFIVQDIGHQNGREQFEKVLMGLLK--RILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----Q 533 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~il~~l~~--~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~----~ 533 (562)
+++++.. +.++++.+++.++. .+.+++++||.+|++++.+|++.|+..+.||++.+++.+..++... +
T Consensus 522 ys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~ 595 (980)
T 3ibv_A 522 YASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVT 595 (980)
T ss_dssp TGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCC
T ss_pred HHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCC
Confidence 9999963 46899999999999 9999999999999999999999999999999999999998888731 0
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHh
Q 008533 534 -----------------RRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 534 -----------------~~~~~~~~~~l~~l~~~~~ 552 (562)
...+..++|++|.++++.+
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 596 DMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp C--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred cccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 1246689999999999876
No 11
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3e-34 Score=309.34 Aligned_cols=511 Identities=14% Similarity=0.211 Sum_probs=365.6
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHH
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ 92 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~ 92 (562)
+++.|.+++.++++|+++ .|++|+++|++++++|++|..+..+|.+ +.++.+|++|+..|++.|++.|..++++.+.
T Consensus 26 Dv~~Le~lv~~ly~p~~~-~r~qA~~~L~q~q~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~ 102 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGA-QQRMAQEVLTHLKEHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCE 102 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHH-HHHHHHHHHHTSSCCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHcCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence 578999999999999999 9999999999999999999999999976 7899999999999999999999999999999
Q ss_pred HHHHHHhhhhhC---------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 93 YIKSELLPCLGA---------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 93 ~i~~~ll~~l~~---------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
.||+.+++.+.. .++.++++++.+++.|++.++++.||++++.+.+.+++ ++..+..++.+|..+.++..
T Consensus 103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999998742 24778899999999999999999999999999998865 45778889999999998854
Q ss_pred hcccc----c----CCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhh--------------------
Q 008533 164 QVLDS----D----VPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA-------------------- 214 (562)
Q Consensus 164 ~~~~~----~----~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~-------------------- 214 (562)
..-.. . ....+......+++.+...+++ .++.+...+++++..++.|++-.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~~~ 261 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPM 261 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSSHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCChH
Confidence 31000 0 0000011223333333333322 34455555555555555554311
Q ss_pred -------------------HHhc----hHHHHHHHhhh-------------ccCCCHHHHHHHHHHHHHHHhhCccc---
Q 008533 215 -------------------LFVS----MDQYLQGLFLL-------------SNDPSAEVRKLVCAAFNLLIEVRPSF--- 255 (562)
Q Consensus 215 -------------------~~~~----~~~~l~~l~~~-------------~~~~~~~~~~~~~~~L~~l~~~~~~~--- 255 (562)
+.+. +..++..+... ..+.|.+.-...+..++.+.+.+...
T Consensus 262 ~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~ 341 (1073)
T 3gjx_A 262 FRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEK 341 (1073)
T ss_dssp HHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011 11111111110 11223455555666666555543322
Q ss_pred ---hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc---cc--------------------chhhHHhhhhHHHHH
Q 008533 256 ---LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA---QL--------------------PHENLKEFLPRLVPV 309 (562)
Q Consensus 256 ---~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~---~~--------------------~~~~~~~~l~~l~~~ 309 (562)
+.+.+...+.+++.+...++.++...++++|..+.+. +. .....++++..+...
T Consensus 342 ~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~v 421 (1073)
T 3gjx_A 342 RLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLL 421 (1073)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 2345556667778877888999999999999987654 10 012256778888888
Q ss_pred HHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhh
Q 008533 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT 389 (562)
Q Consensus 310 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 389 (562)
++..|...+|... .+ +++ .+.+|-+. .| .+.-+.++...+++..++...++++...
T Consensus 422 lI~~m~~P~ev~i-~e-~e~------ge~~re~~-------------~d---~~~~~ly~~mrd~L~~lt~l~~~~~~~i 477 (1073)
T 3gjx_A 422 MVSRMAKPEEVLV-VE-NDQ------GEVVREFM-------------KD---TDSINLYKNMRETLVYLTHLDYVDTEII 477 (1073)
T ss_dssp HHHTCCCSCCEEE-EE-CSS------SCEEEEEC-------------SS---CHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHhcCCCccccc-cC-ccc------chHHHHHH-------------hh---cchHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888876553211 01 000 00111000 01 1112355566778877775556677788
Q ss_pred hHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcCCC-----ChhHHHHHHHHHHHhHHH
Q 008533 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDK-----FPLIRSISCWTLSRFSKF 463 (562)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~ 463 (562)
+++.+.+.+..+ .++|..++++++++|+++..+.+.. .++++++++.++.....+ .+.++...+|++|++.+|
T Consensus 478 ~~~~l~~~~~~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 478 MTKKLQNQVNGT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHTSC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 888888777543 3459999999999999996655433 588999999998877543 467888899999999999
Q ss_pred HhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccc--------cccHHHHHHHHHHHHhhhhhh
Q 008533 464 IVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--------APRLEIILQHLMMAFGKYQRR 535 (562)
Q Consensus 464 ~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--------~~~l~~il~~L~~~l~~~~~~ 535 (562)
+.. +.++++.++..++..+.++++.|+.+||.|+..+++.|+..+ .||++++++.+.....+.+.+
T Consensus 557 l~~------h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~ 630 (1073)
T 3gjx_A 557 LRA------HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQ 630 (1073)
T ss_dssp HHH------CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHH
T ss_pred HHh------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHH
Confidence 974 588999999999999999999999999999999999997655 579999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 008533 536 NLRIVYDAIGTLADAVGFELNQV 558 (562)
Q Consensus 536 ~~~~~~~~l~~l~~~~~~~~~~~ 558 (562)
....+++++|+++++.|.+..+|
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~ 653 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQE 653 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcchHH
Confidence 89999999999999999765433
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=9.6e-34 Score=321.50 Aligned_cols=504 Identities=14% Similarity=0.156 Sum_probs=381.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC------C----hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFP------D----FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~------~----~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
.++.++|..+.|||++ +|++|+..|.+..+.+ . ++..++..+. +.++.+|..|+..+.+...
T Consensus 6 ~~l~~lL~~l~s~d~~-~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~---- 77 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKD-FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE---DKNGEVQNLAVKCLGPLVS---- 77 (1230)
T ss_dssp HHHHHHHHHTTCSSHH-HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHhcCCCCHh-HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHH----
Confidence 4577888889999999 9999999998854322 2 3344555443 6789999999998887654
Q ss_pred cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC---------chHHHHHHHHHHhc-cCChhHHhHHHHH
Q 008533 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA---------GWLELLQALVTCLD-SNDINHMEGAMDA 154 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~---------~w~~ll~~l~~~l~-~~~~~~~~~al~~ 154 (562)
.+++.....+++.+++.+.++++.+|..++.+++.++...++. .|++++|.|.+.+. ++++.+|.+++.+
T Consensus 78 ~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp TSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 3566788899999999999999999999999999999876544 69999999999998 4789999999999
Q ss_pred HHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc-hHHHHHHHhhhccCC
Q 008533 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLSNDP 233 (562)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~ 233 (562)
+..+++..+..+. ++...+++.++..+.+++..||..|+++++.++...++.+.+. ++.+++.+... .
T Consensus 158 l~~~~~~~~~~l~--------~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~---~ 226 (1230)
T 1u6g_C 158 MADMLSRQGGLLV--------NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN---D 226 (1230)
T ss_dssp HHHHHHHTCSSCT--------TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT---C
T ss_pred HHHHHHHhHhHHH--------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---C
Confidence 9999987765443 3578899999999999999999999999999998876544322 44444444332 2
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhh
Q 008533 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSN 313 (562)
Q Consensus 234 ~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 313 (562)
+..+|..+++++..++...++.+.+|++.+++.++..+.+.++++|..+++++..+++. ..+.+.++++.+++.++..
T Consensus 227 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~--~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 227 SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR--CPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--ChHHHHHhHHHHHHHHHHH
Confidence 34678889999999999999899999999999999999998999999999999998886 4455678999999999988
Q ss_pred cccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC----CCCccccchhcHhhhHHHHHHHHHhhhcc-----
Q 008533 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE----DDDDDIVNVWNLRKCSAAALDVLSNVFGD----- 384 (562)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----- 384 (562)
+...++. ..++++++ .+..+. . .+.++++ +..++++..|.+|.+|..++..++...|+
T Consensus 305 l~~d~~~--~~~~d~~~--~~~~~~-------~--~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~ 371 (1230)
T 1u6g_C 305 LTYDPNY--NYDDEDED--ENAMDA-------D--GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF 371 (1230)
T ss_dssp CCCC-------------------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred hCCCCCC--CCcccccc--cccccc-------c--ccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8754321 00000000 000000 0 0000000 00112234688888888888877764432
Q ss_pred ----------------------------------------------------------chhhhhHHHHHHHHcCCCCCCc
Q 008533 385 ----------------------------------------------------------EILPTLMPVIQAKLSASGDEAW 406 (562)
Q Consensus 385 ----------------------------------------------------------~~~~~l~~~l~~~l~~~~~~~~ 406 (562)
..++.+++.+.+.+++++ |
T Consensus 372 ~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~---~ 448 (1230)
T 1u6g_C 372 YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS---V 448 (1230)
T ss_dssp HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC---H
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC---H
Confidence 123344555555677777 9
Q ss_pred hhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCCh--hHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFP--LIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l 484 (562)
++|.+++.+++.++..+++.+.++++.+++.++..+.|+++ .+|..++..++.+.+..+ +....+|++.+++.+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~----~~~~~~~l~~llp~L 524 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS----PQVFHPHVQALVPPV 524 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC----GGGGHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC----HHHHHhHHHHHHHHH
Confidence 99999999999999988877889999999999999999875 888888888888776442 233577999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHccc-------cccccHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 485 LKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEIILQHLMMAFG--KYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 485 ~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~l~~il~~L~~~l~--~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
+..++|.+.+|+..|+.+++.+++.+++ .+.||++.+++.++..+. +.+...+..++.++|.++...|+.+
T Consensus 525 ~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 525 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999988765 788999999999999994 4445566699999999999999765
Q ss_pred hcccc
Q 008533 556 NQVLL 560 (562)
Q Consensus 556 ~~~~~ 560 (562)
.+|+
T Consensus 605 -~~~~ 608 (1230)
T 1u6g_C 605 -GSDL 608 (1230)
T ss_dssp -CTHH
T ss_pred -hhhH
Confidence 5554
No 13
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=311.09 Aligned_cols=511 Identities=14% Similarity=0.173 Sum_probs=365.0
Q ss_pred CHhhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 008533 10 QEQGFNEICRLLEQQISP--SSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (562)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~--d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~ 87 (562)
.++..+++.+++..+++| |++ .|++|+++|++++++|+++..+..+|. +.+.++.+|++|+..||+.+.++|..++
T Consensus 6 ~~~~~~~l~~~l~~~~~p~~~~~-~r~~Ae~~L~~~~~~p~~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 6 VNALCEQLVKAVTVMMDPNSTQR-YRLEALKFCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHH-HHHHHHHHHHHHHHHCTTHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHHhCchHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 367889999999999998 556 899999999999999988888888787 2378999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhC-------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhh
Q 008533 88 PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICE 160 (562)
Q Consensus 88 ~~~~~~i~~~ll~~l~~-------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~ 160 (562)
++.+..||+.+++.+.+ .+..||++++.+++.|++.++++.||++++.+.+.+++ ++..++.++.+|..+++
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999998752 46899999999999999999889999999999999876 56779999999999998
Q ss_pred cchhccc--ccC----CCCCcchhHhhHHHHHHhhcC-------------------CCHHHHHHHHHHHHHHHhhchhhH
Q 008533 161 DIPQVLD--SDV----PGLAECPINIFLPRLLQFFQS-------------------PHTSLRKLSLGSVNQFIMLMPSAL 215 (562)
Q Consensus 161 ~~~~~~~--~~~----~~~~~~~~~~il~~l~~~l~~-------------------~~~~vr~~al~~l~~~~~~~~~~~ 215 (562)
+....-. ... ...+...+..+++.+.+.+++ ++..++..+++|+..++.|.|..+
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 7443200 000 000111233555555555533 124577888888888777765322
Q ss_pred H-hchHHHHHHHhhhcc-----------------------------------------------------CCCHHHHHHH
Q 008533 216 F-VSMDQYLQGLFLLSN-----------------------------------------------------DPSAEVRKLV 241 (562)
Q Consensus 216 ~-~~~~~~l~~l~~~~~-----------------------------------------------------~~~~~~~~~~ 241 (562)
. ..-..+++.++..+. +.+.++.+..
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 1 100012222222211 1123444444
Q ss_pred HHHHHHHHhhCcc--------chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc--chhhHHhhhhHHHHHH-
Q 008533 242 CAAFNLLIEVRPS--------FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVL- 310 (562)
Q Consensus 242 ~~~L~~l~~~~~~--------~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~--~~~~~~~~l~~l~~~l- 310 (562)
++.+..+...... ...+++..++++++..+.+++.++...+++||..+.+... ....+.+++..+++.+
T Consensus 323 ~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~ 402 (1204)
T 3a6p_A 323 CQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASM 402 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 4444444322111 1224456777777777788888899999999998877621 2345778999999998
Q ss_pred --HhhcccChhhH---hhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc
Q 008533 311 --LSNMIYADDDE---SLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (562)
Q Consensus 311 --~~~l~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (562)
+..|.+.+++. ..|..++ +++++|++...|+.|+...+.+..++...+..
T Consensus 403 ~~l~k~~yp~~~~~~~~~~~~~D-------------------------~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 403 TNLVKMGFPSKTDSPSCEYSRFD-------------------------FDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp HHHSCCCCSSCCSSTHHHHHHHH-------------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcCccccCCcchhhhhcc-------------------------cCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 77777655332 1222111 11112223457899999999999999998887
Q ss_pred hhhhhHHHHHHHHcCC----------------------CCCCchhHHHHHHHHHHHhhcchhhh-hhhHH-HHHHHHhhh
Q 008533 386 ILPTLMPVIQAKLSAS----------------------GDEAWKDREAAVLALGAIAEGCIKGL-YPHLS-EIVAFLIPL 441 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~----------------------~~~~~~~r~aal~~l~~i~~~~~~~~-~~~l~-~~~~~l~~~ 441 (562)
.++.+.+.+.+.+.+. .+..|...++....+.++++++.+.. .++++ .+++.+++.
T Consensus 458 ~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ 537 (1204)
T 3a6p_A 458 SFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM 537 (1204)
T ss_dssp HHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 7777777776655431 12237788888888998888774322 12222 234444443
Q ss_pred c---CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhcc------------CCHHHHHHHHHHHHHH
Q 008533 442 L---DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD------------TNKRVQEAACSAFATL 506 (562)
Q Consensus 442 l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d------------~~~~vr~~a~~al~~l 506 (562)
+ ...+|.+|..++.++|++..++.. +.++++.+++.++..+.+ .+..||.+||.++.++
T Consensus 538 ll~~~~~~p~l~~~~i~~l~~l~~~~~~------~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L 611 (1204)
T 3a6p_A 538 VLNFDTKDPLILSCVLTNVSALFPFVTY------RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKM 611 (1204)
T ss_dssp HHHCCCSCHHHHHHHHHHHHHHGGGGGT------CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHHHHHHHHhc------CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 2 346899999999999999998753 468999999999998876 2458999999999999
Q ss_pred HHHccccccccHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHhhh
Q 008533 507 EEEAAEELAPRLEIILQHLMMAFGKYQ---RRNLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 507 ~~~~~~~~~~~l~~il~~L~~~l~~~~---~~~~~~~~~~l~~l~~~~~~~ 554 (562)
+..+++.+.||++.+.+.+..++...+ ...+..++++++.++..++++
T Consensus 612 ~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~ 662 (1204)
T 3a6p_A 612 CRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNY 662 (1204)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCH
Confidence 999999999999999999999888555 566778999999986554443
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.97 E-value=1.1e-27 Score=261.80 Aligned_cols=489 Identities=13% Similarity=0.145 Sum_probs=362.1
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHhhc-CCC--------hHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH--hh
Q 008533 16 EICRLLEQ-QISPSSTADKSQIWQQLQQYSQ-FPD--------FNNYLAFILARAEGKSVEIRQAAGLLLKNNLRT--AY 83 (562)
Q Consensus 16 ~l~~~l~~-~~s~d~~~~r~~A~~~L~~~~~-~~~--------~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~--~w 83 (562)
.+.+.+-. ..++|.. +|+.|...|.++.. .|+ ++..++..+. +.++.+|..|...+.+.... .|
T Consensus 215 ~~l~~l~~~~~d~~~~-vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~vr~~a~e~l~~l~~~~~~~ 290 (852)
T 4fdd_A 215 SFIENLFALAGDEEPE-VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ---DQDENVALEACEFWLTLAEQPICK 290 (852)
T ss_dssp HHHHHHHHHHTCCCHH-HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHhcchhHH
Confidence 33343333 3456777 99999999998653 332 2333444433 56889999998877765432 22
Q ss_pred ccCChhhHHHHHHHHhhhh-----------hC-----------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 84 KSMSPSNQQYIKSELLPCL-----------GA-----------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l-----------~~-----------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
..+. .....+.+.+++.+ .+ .++.+|+.++.+++.++...+....+.+++.+.+.++
T Consensus 291 ~~~~-~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 291 DVLV-RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 369 (852)
T ss_dssp HHHT-TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 2222 23334556666665 23 3457899999999999988766677899999999999
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchh-hHHhchH
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS-ALFVSMD 220 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~-~~~~~~~ 220 (562)
++++..|.+|+.+++.+++..+..+. ..+..++|.++..++|+++.||..|+.+++.+....++ ....++.
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~--------~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~ 441 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMI--------PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK 441 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHG--------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHH--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999999999998876543 35788999999999999999999999999999887653 2345677
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc--cc----
Q 008533 221 QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA--QL---- 294 (562)
Q Consensus 221 ~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~--~~---- 294 (562)
.+++.++..+.+.++.+|..++.+|..+++..+..+.+|++.+++.+...++.........+++++..++.. +.
T Consensus 442 ~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~ 521 (852)
T 4fdd_A 442 PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP 521 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccH
Confidence 888888888888899999999999999998888778899999988887766544433333344444444322 00
Q ss_pred -------------------------------------chhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 295 -------------------------------------PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 295 -------------------------------------~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
....+.++++.+++.++..+...-........++
T Consensus 522 ~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~--------- 592 (852)
T 4fdd_A 522 EYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP--------- 592 (852)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------
Confidence 1112223333333333222211000000000000
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchh-----hhhHHHHHHHHcCCCCCCchhHHHH
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEIL-----PTLMPVIQAKLSASGDEAWKDREAA 412 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~l~~~l~~~l~~~~~~~~~~r~aa 412 (562)
+..+++| ..++..+.++++.++..+|+.+. +.+++.+.+++++++ +.+|..+
T Consensus 593 --------------~~~~~~d------~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~---~~vr~~a 649 (852)
T 4fdd_A 593 --------------DQYEAPD------KDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKM---PEVRQSS 649 (852)
T ss_dssp --------------TTSCCCC------THHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSS---HHHHHHH
T ss_pred --------------cccCCCc------chHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCC---hhHHHHH
Confidence 0011111 13688889999999999987544 467899999998877 9999999
Q ss_pred HHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC-
Q 008533 413 VLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT- 491 (562)
Q Consensus 413 l~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~- 491 (562)
+.+++.++..++..+.+|++.++|.+...+.+.++.+|.+|+|++|.++..++.. ..+|++.+++.+++.++++
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~-----~~p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE-----MQPYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG-----GGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHh-----HHHHHHHHHHHHHHHhCCCC
Confidence 9999999999998999999999999999998889999999999999999988643 6899999999999999876
Q ss_pred -CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHhhh
Q 008533 492 -NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR-RNLRIVYDAIGTLADAVGFE 554 (562)
Q Consensus 492 -~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~-~~~~~~~~~l~~l~~~~~~~ 554 (562)
+..++..|+.+++++...+++.+.|+++.+++.+++.+....+ +....++.++..++..-+..
T Consensus 725 ~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred CCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh
Confidence 4689999999999999999888999999999999999987444 45669999999999887654
No 15
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=2.9e-28 Score=255.99 Aligned_cols=419 Identities=14% Similarity=0.096 Sum_probs=278.4
Q ss_pred CChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 86 MSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI-AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
+++..+..+.+.+.+.+.++++.||..++.+++.++...+. ..++.++|.+...++++++.+|..++.+++.++...+.
T Consensus 157 ~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 157 VSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred cCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 44455667777777777889999999999999999987644 34588999999999999999999999999999887664
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHH
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAA 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 244 (562)
. .....++|.+.+.++++++.+|..++++++.+....++.. ....+++.+...++++++.+|..++.+
T Consensus 237 ~----------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 237 E----------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHK 304 (588)
T ss_dssp H----------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc--chhHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 2 1346788999999999999999999999999987654321 223457777777888899999999999
Q ss_pred HHHHHhhCccchh--hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 245 FNLLIEVRPSFLE--PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 245 L~~l~~~~~~~~~--~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
|..++...+.... .+++.+++.+....++.++.+|..++..+..++.. ... ....+.++|.+...+...+.++.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~--~~~--~~~~~~l~p~l~~~l~d~~~~Vr 380 (588)
T 1b3u_A 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI--LGK--DNTIEHLLPLFLAQLKDECPEVR 380 (588)
T ss_dssp HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH--HCH--HHHHHHTHHHHHHHHTCSCHHHH
T ss_pred HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--hhH--hHHHHHHHHHHHHHhCCCchHHH
Confidence 9999988765433 56778888888888999999999999999988764 111 11234566666555543222221
Q ss_pred hh--hh----hhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc-hhhhhHHHHH
Q 008533 323 LV--EA----EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE-ILPTLMPVIQ 395 (562)
Q Consensus 323 ~~--~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~l~~~l~ 395 (562)
.- .. ......+...+.+.|.+.... .+..|.+|..+..++..++..+|.. ..+.++|.+.
T Consensus 381 ~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~-------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 381 LNIISNLDCVNEVIGIRQLSQSLLPAIVELA-------------EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HHHHTTCHHHHHHSCHHHHHHHHHHHHHHHH-------------TCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh-------------cCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 10 00 000000000000111111000 0124667777777777777666653 3346666666
Q ss_pred HHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchh
Q 008533 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGRE 475 (562)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 475 (562)
+.+++++ |.+|.+|+.+++.++...+.. .+.+.++|.+...+.|+++.+|.+++++++.++..++. ..
T Consensus 448 ~~l~d~~---~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-------~~ 515 (588)
T 1b3u_A 448 AWLVDHV---YAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-------DI 515 (588)
T ss_dssp HGGGCSS---HHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHhcCCc---HHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-------HH
Confidence 6666666 777777777777776655432 34566666666666666777777777777777766542 45
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l 547 (562)
+.+.+++.+++.++|+++.||..++.+|+.++...+.. .+.+.+++.|..++.+.+..++..+.++++.+
T Consensus 516 ~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh--hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 66677777777777766777777777777766655431 12245555565555555555555677766654
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=5.1e-28 Score=254.09 Aligned_cols=498 Identities=15% Similarity=0.092 Sum_probs=297.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~~~~~~l~~il~~~-~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
...++...|....+++.+ +|+.+...|..+.. .+.+...++.++... .+.++.+|..|+..+.+.... +++
T Consensus 46 ~~~~l~~~L~~~~d~~~~-vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~----~~~ 120 (588)
T 1b3u_A 46 TRSELLPFLTDTIYDEDE-VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE----HSP 120 (588)
T ss_dssp HHHTHHHHHHHTCCCCHH-HHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT----SCH
T ss_pred HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH----CCH
Confidence 344566666666666666 77777777776442 222333333332111 155777888887777766543 222
Q ss_pred h-hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 89 S-NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 89 ~-~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
+ .+..+.+.+.....+++..+|..++.+++.++...+...++.+++.+.+.++++++.+|..++.+++.+++..+..
T Consensus 121 ~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~-- 198 (588)
T 1b3u_A 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD-- 198 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--
Confidence 2 2233334444444566788899999999988876655678899999999999999999999999999999877642
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 247 (562)
.....++|.+...++++++.+|..|++++..+....++. ...+.+++.+.....++++.+|..++++|+.
T Consensus 199 --------~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~ 268 (588)
T 1b3u_A 199 --------NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268 (588)
T ss_dssp --------HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHH
T ss_pred --------hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 235778999999999999999999999999988876542 1223445666666778889999999999999
Q ss_pred HHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhh----
Q 008533 248 LIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL---- 323 (562)
Q Consensus 248 l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~---- 323 (562)
++...+.. .+.+.+++.+...++|.++++|..+...+..+++.-........+++.++|.+...+...+..+..
T Consensus 269 l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~ 346 (588)
T 1b3u_A 269 LQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALAS 346 (588)
T ss_dssp HHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHT
T ss_pred HHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 98765432 234567888888889999999999999999988751111111245566666665443321111000
Q ss_pred -hhh-hhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcC
Q 008533 324 -VEA-EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSA 400 (562)
Q Consensus 324 -~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~ 400 (562)
+.. .+.-..+....++.|.+.... .+..+.+|..+..++..++..++. ...+.++|.+.+.+.+
T Consensus 347 ~l~~l~~~~~~~~~~~~l~p~l~~~l-------------~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 347 VIMGLSPILGKDNTIEHLLPLFLAQL-------------KDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp TGGGGHHHHCHHHHHHHTHHHHHHHH-------------TCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHh-------------CCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 000 000000000000111111000 012345555555555555555544 2334555555555555
Q ss_pred CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHH
Q 008533 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKV 480 (562)
Q Consensus 401 ~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~i 480 (562)
++ |++|.+++.+++.++...+.. .+.+.++|.+...+.|+++.||.+|+.+++.++..++ ...+.+.+
T Consensus 414 ~~---~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------~~~~~~~l 481 (588)
T 1b3u_A 414 AK---WRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG-------KEWAHATI 481 (588)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHT
T ss_pred CC---chHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-------chhHHHHH
Confidence 55 666666666666555544332 2344555666666666666666666666666655542 13344555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 008533 481 LMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELN 556 (562)
Q Consensus 481 l~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~ 556 (562)
++.+...+.+++..+|..++.+++.++..++. ..+.+.+++.|...+.+....++..++.+++.++..+|.++.
T Consensus 482 lp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 555 (588)
T 1b3u_A 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh
Confidence 55555555555566666666666666555432 245555666666655555555555666666666666655543
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.97 E-value=2.8e-26 Score=251.97 Aligned_cols=493 Identities=13% Similarity=0.107 Sum_probs=373.8
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHhhc-CCC-h---HH-HHHHHHh-hccCCCHHHHHHHHHHHHHHHHHh------
Q 008533 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-FPD-F---NN-YLAFILA-RAEGKSVEIRQAAGLLLKNNLRTA------ 82 (562)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~A~~~L~~~~~-~~~-~---~~-~l~~il~-~~~~~~~~~R~~a~~~lk~~i~~~------ 82 (562)
+.+.|.... +++.. +|+.|.+.|..+.. .|. + +. .++.++. ...+.++.+|..|...+.......
T Consensus 225 ll~~l~~~~~~~~~~-~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 225 LMQVVCEATQAEDIE-VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHTCSCHH-HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444443 46667 99999999988653 222 1 11 2222221 112668899999998888766542
Q ss_pred ------hccCC----hhhHHHHHHHHhhhhhC-------CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCCh
Q 008533 83 ------YKSMS----PSNQQYIKSELLPCLGA-------ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (562)
Q Consensus 83 ------w~~l~----~~~~~~i~~~ll~~l~~-------~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~ 145 (562)
|+... ......+.+.++..+.+ .++.+|..++.+++.++...+....+.+++.+.+.++++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSH
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCCh
Confidence 11111 11224556667776753 24689999999999999876666789999999999999999
Q ss_pred hHHhHHHHHHHHHhhcch-hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH--HhchHHH
Q 008533 146 NHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL--FVSMDQY 222 (562)
Q Consensus 146 ~~~~~al~~l~~i~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~--~~~~~~~ 222 (562)
..|++++.+++.+++... ..+. ..+..++|.++..+.++++.||..++.+++.++...++.+ ..+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~--------~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 455 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRT--------YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHH--------HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Confidence 999999999999997764 3332 3567899999999999999999999999999998765443 3456777
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHhhCc----cchhhhHHHHHHHHHhhcCC--CChhHHHHHhhhHHHhhccccch
Q 008533 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP----SFLEPHLRNLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPH 296 (562)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~----~~~~~~l~~i~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~ 296 (562)
++.++..+++. +.+|..++.+|..+++..+ ..+.+|++.+++.++..+.+ .++.+|..+++.++.+++. ..
T Consensus 456 l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~--~~ 532 (861)
T 2bpt_A 456 VQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY--AT 532 (861)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH--cc
Confidence 88888877765 8999999999999988754 66789999999999988764 4478999999999998876 33
Q ss_pred hhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHH
Q 008533 297 ENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALD 376 (562)
Q Consensus 297 ~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~ 376 (562)
....+++..++|.++..+...- . ++. .+ . .+++......++..+..++.
T Consensus 533 ~~~~~~~~~l~~~l~~~l~~~~---~-~~~-----------~i--------------~--~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 533 DTVAETSASISTFVMDKLGQTM---S-VDE-----------NQ--------------L--TLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHT---T-SCG-----------GG--------------C--CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH---h-hhc-----------cc--------------C--ChhhHHHHHHHHHHHHHHHH
Confidence 3456677777777765443100 0 000 00 0 00000112346788899999
Q ss_pred HHHhhhccc---hhhhhHHHHHHHHcCCCCCCc-hhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHH
Q 008533 377 VLSNVFGDE---ILPTLMPVIQAKLSASGDEAW-KDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSI 452 (562)
Q Consensus 377 ~l~~~~~~~---~~~~l~~~l~~~l~~~~~~~~-~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~ 452 (562)
.++...|.. ..+.+++.+.+.+++.+ + .+|+.++.+++.++...++.+.+|++.++|.+...++++++.+|..
T Consensus 582 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~ 658 (861)
T 2bpt_A 582 AVIRKSPSSVEPVADMLMGLFFRLLEKKD---SAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSIT 658 (861)
T ss_dssp HHHHHCGGGTGGGHHHHHHHHHHHHHSTT---GGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHccCC---CCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 999988873 45678888888888877 7 8999999999999998888889999999999999999899999999
Q ss_pred HHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHh
Q 008533 453 SCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 453 a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~ 530 (562)
|+.+++.++..++. ...+|++.+++.++..+.+++ +.+|..++.+++.++..+++.+.||++.+++.++..+.
T Consensus 659 a~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 659 AVGFIADISNSLEE-----DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHTGG-----GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhch-----hccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 99999999988764 357899999999999998764 88999999999999999999999999999999999887
Q ss_pred hhh-----------hhHHHHHHHHHHHHHHHHh--hhhhcccc
Q 008533 531 KYQ-----------RRNLRIVYDAIGTLADAVG--FELNQVLL 560 (562)
Q Consensus 531 ~~~-----------~~~~~~~~~~l~~l~~~~~--~~~~~~~~ 560 (562)
... ...+..++++++.++..+| ++.+.||+
T Consensus 734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~ 776 (861)
T 2bpt_A 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV 776 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 421 2334589999999999988 35667775
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.96 E-value=4.7e-25 Score=242.68 Aligned_cols=492 Identities=15% Similarity=0.127 Sum_probs=365.3
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHhhc-CC---------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhh--
Q 008533 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-FP---------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY-- 83 (562)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~A~~~L~~~~~-~~---------~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w-- 83 (562)
+.+.+.... ++|.+ +|..|.+.|..+.. .| .++..++..+. +.++.+|..|...+.+......
T Consensus 218 il~~l~~~~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~v~~~al~~l~~l~~~~~~~ 293 (876)
T 1qgr_A 218 IMQVVCEATQCPDTR-VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK---SDIDEVALQGIEFWSNVCDEEMDL 293 (876)
T ss_dssp HHHHHHHHTTCSSHH-HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHhH
Confidence 444444433 45666 99999999988543 22 34444444332 5678999999877776654321
Q ss_pred -------------c-c-CC---hhhHHHHHHHHhhhhh-------CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHH
Q 008533 84 -------------K-S-MS---PSNQQYIKSELLPCLG-------AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT 138 (562)
Q Consensus 84 -------------~-~-l~---~~~~~~i~~~ll~~l~-------~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~ 138 (562)
+ . .. ......+...+++.+. +.++.+|+.++.+++.++...+....+.+++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~ 373 (876)
T 1qgr_A 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (876)
T ss_dssp HHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred hhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHH
Confidence 0 0 00 0112344555666664 24678999999999999988666678899999999
Q ss_pred HhccCChhHHhHHHHHHHHHhhcch-hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhH--
Q 008533 139 CLDSNDINHMEGAMDALSKICEDIP-QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSAL-- 215 (562)
Q Consensus 139 ~l~~~~~~~~~~al~~l~~i~~~~~-~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~-- 215 (562)
.++++++.+|.+++.+++.+++..+ ..+. ..+..++|.++..++++++.||..|+.+++.++...++..
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~--------~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 445 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLK--------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN 445 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHH--------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhccc
Confidence 9999999999999999999998765 3222 3567899999999999999999999999999998876542
Q ss_pred HhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc--------------cchhhhHHHHHHHHHhhcCCC---ChhH
Q 008533 216 FVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP--------------SFLEPHLRNLFEYMLQVNKDT---DDDV 278 (562)
Q Consensus 216 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~--------------~~~~~~l~~i~~~~~~~~~~~---~~~v 278 (562)
.++++.+++.++..+.+. +.++..++.+|..++...+ +.+.+|++.+++.++..+.+. +..+
T Consensus 446 ~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 446 DVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp TTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 356778888888888764 8899999999999987654 357899999999999887654 3578
Q ss_pred HHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCC
Q 008533 279 ALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (562)
Q Consensus 279 ~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 358 (562)
|..+++.+..++.. ......+++..+++.++..+...- . ++ .... .+
T Consensus 525 r~~~~~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~---~-~~--------------------------~~~~-~~ 571 (876)
T 1qgr_A 525 RSSAYESLMEIVKN--SAKDCYPAVQKTTLVIMERLQQVL---Q-ME--------------------------SHIQ-ST 571 (876)
T ss_dssp HHHHHHHHHHHHHT--CCSTTHHHHHHHHHHHHHHHHHHH---T-TT--------------------------TSCC-ST
T ss_pred HHHHHHHHHHHHHH--CchhhHHHHHHHHHHHHHHHHHHH---H-HH--------------------------hccC-Ch
Confidence 88899999998876 223455677777777765442100 0 00 0000 00
Q ss_pred ccccchhcHhhhHHHHHHHHHhhhc-c---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH
Q 008533 359 DDIVNVWNLRKCSAAALDVLSNVFG-D---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (562)
Q Consensus 359 ~d~~~~~~~r~~a~~~l~~l~~~~~-~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~ 434 (562)
+|......++..+..++..++..+| + ..++.+++.+.+.+++.. +.+.+|..++.+++.++...+..+.+|++.+
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA-GSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc-CCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111112467778899999998888 4 445677888888887652 1157899999999999998888889999999
Q ss_pred HHHHhhhcCCC-ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHcc
Q 008533 435 VAFLIPLLDDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 435 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~~vr~~a~~al~~l~~~~~ 511 (562)
+|.+...+.+. ++.||..|+++++.++..++. ...++++.+++.++..+.+ .+..+|..++.+++.++..++
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-----NIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-----GGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 99999999886 899999999999999998764 3578899999999999987 357899999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHhh---------hhhcccc
Q 008533 512 EELAPRLEIILQHLMMAFGKYQ-----------RRNLRIVYDAIGTLADAVGF---------ELNQVLL 560 (562)
Q Consensus 512 ~~~~~~l~~il~~L~~~l~~~~-----------~~~~~~~~~~l~~l~~~~~~---------~~~~~~~ 560 (562)
..+.+|++.+++.+...+.... ...+..++++++.++...|. +.+.||+
T Consensus 726 ~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 794 (876)
T 1qgr_A 726 GEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRV 794 (876)
T ss_dssp GGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGH
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHH
Confidence 8899999999999998886431 13344789999999998875 4567764
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.95 E-value=3.3e-26 Score=259.75 Aligned_cols=453 Identities=12% Similarity=0.115 Sum_probs=350.2
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHH
Q 008533 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQ 134 (562)
Q Consensus 55 ~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~ 134 (562)
.+|....+.++.+|..|..-|.+.+++....+++.....+...+++.+.++++.+|+.++.+++.++...++..++.+++
T Consensus 10 ~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~ 89 (1230)
T 1u6g_C 10 NLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33433337899999999998888876655556666677888889999999999999999999999998766678899999
Q ss_pred HHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhchh
Q 008533 135 ALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPS 213 (562)
Q Consensus 135 ~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~ 213 (562)
.+...+.++++.+|.++..+++.++..++..... .+........++|.++..+. ++++.+|..|+.++..++...++
T Consensus 90 ~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~--~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~ 167 (1230)
T 1u6g_C 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG--SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG 167 (1230)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc--cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh
Confidence 9999999998899999999999999877653100 00012357889999999998 48899999999999999987666
Q ss_pred hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccch-hhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 214 ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFL-EPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 214 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.+.++++.+++.++..+.++++.+|..++.++..++...++.+ ...++.+++.+... .+..+|..++++|+.+++.
T Consensus 168 ~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~---~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 168 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN---DSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT---CSSCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---CchhHHHHHHHHHHHHHHH
Confidence 6667788899999999988889999999999999998766533 22344444443332 2245788889999998876
Q ss_pred ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHH
Q 008533 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (562)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~ 372 (562)
....+.++++.+++.++..+... + ..+|..+.
T Consensus 245 --~~~~~~~~l~~l~~~ll~~l~d~----------------------------------------~------~~vR~~a~ 276 (1230)
T 1u6g_C 245 --AGHRIGEYLEKIIPLVVKFCNVD----------------------------------------D------DELREYCI 276 (1230)
T ss_dssp --SSGGGTTSCTTHHHHHHHHHSSC----------------------------------------C------TTTHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHhcCC----------------------------------------C------HHHHHHHH
Confidence 33467788899999987765410 0 13788899
Q ss_pred HHHHHHHhhhccc---hhhhhHHHHHHHHcC----------------------------------CCCCCchhHHHHHHH
Q 008533 373 AALDVLSNVFGDE---ILPTLMPVIQAKLSA----------------------------------SGDEAWKDREAAVLA 415 (562)
Q Consensus 373 ~~l~~l~~~~~~~---~~~~l~~~l~~~l~~----------------------------------~~~~~~~~r~aal~~ 415 (562)
.++..++..++.. .++.++|.+.+.+.. .+...|++|.+|+.+
T Consensus 277 ~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~ 356 (1230)
T 1u6g_C 277 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC 356 (1230)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred HHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHH
Confidence 9999999888764 455566665444321 012259999999999
Q ss_pred HHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhc----C----------CCcchhhHHHHH
Q 008533 416 LGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI----G----------HQNGREQFEKVL 481 (562)
Q Consensus 416 l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~----------~~~~~~~~~~il 481 (562)
++.++...++.+.++++.++|.+...+.|+++.||.+++.+++.+........ + ......+++.++
T Consensus 357 l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 357 LDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 99999876666789999999999999999999999999999999887653100 0 001245677888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQR--RNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 482 ~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
+.+.+.++++++++|..++.+++.++..++..+.+|++.+++.++..+.+... ..+..++.+++.+.+..|++.+.||
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 516 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH 516 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhH
Confidence 88888899999999999999999999998888899999999999999998653 5566888888888888888877777
Q ss_pred c
Q 008533 560 L 560 (562)
Q Consensus 560 ~ 560 (562)
+
T Consensus 517 l 517 (1230)
T 1u6g_C 517 V 517 (1230)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=8e-22 Score=200.41 Aligned_cols=402 Identities=14% Similarity=0.154 Sum_probs=291.5
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCC--chHHHHHHHHHHHHHHHhcC-------
Q 008533 55 FILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG------- 125 (562)
Q Consensus 55 ~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~--~~~vr~~~~~~i~~i~~~~~------- 125 (562)
.+|....+.+..+|..|-..|++.-.. ........|++.+.+. +..+|..++..+..+....+
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 344433366889999999888874322 1222334566666553 78999999999999875431
Q ss_pred cCch--------HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC--CHH
Q 008533 126 IAGW--------LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP--HTS 195 (562)
Q Consensus 126 ~~~w--------~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~ 195 (562)
...| ..+-..+++.+.++++.+ ..+..+++.++...... .....++|.+++.++++ ++.
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~----------~~w~~ll~~L~~~l~~~~~~~~ 145 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV----------NQWPELIPQLVANVTNPNSTEH 145 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG----------TCCTTHHHHHHHHHHCTTCCHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc----------cccHHHHHHHHHHhccCCCCHH
Confidence 0123 335566777888877777 78888898888764321 12467899999999998 899
Q ss_pred HHHHHHHHHHHHHhhc-hhhHHhchHHHHHHHhhhccCC--CHHHHHHHHHHHHHHHhhCccchhhh--HHHHHHHHHhh
Q 008533 196 LRKLSLGSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEPH--LRNLFEYMLQV 270 (562)
Q Consensus 196 vr~~al~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~--l~~i~~~~~~~ 270 (562)
+|..++.++..++... +..+..+++.+++.+...+++. ++.+|..+++++..++......+... .+.+++.+...
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 9999999999998855 5555667778888888888877 68999999999998765433222111 12245555566
Q ss_pred cCCCChhHHHHHhhhHHHhhccccchhhHHhhhh-HHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCC
Q 008533 271 NKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (562)
Q Consensus 271 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (562)
..+.++++|..+++++..+++. ....+.+++. .+++.++..+...++
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------------ 273 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKSDID------------------------------ 273 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHCSSH------------------------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCch------------------------------
Confidence 7788899999999999999876 4455667777 788876654432111
Q ss_pred CCCCCCCCCccccchhcHhhhHHHHHHHHHhhh-------------------cc-----chhhhhHHHHHHHHcCC----
Q 008533 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-------------------GD-----EILPTLMPVIQAKLSAS---- 401 (562)
Q Consensus 350 ~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-------------------~~-----~~~~~l~~~l~~~l~~~---- 401 (562)
.+|..+.+.+..++... .. ..++.++|.+.+.+.+.
T Consensus 274 ----------------~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~ 337 (462)
T 1ibr_B 274 ----------------EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 337 (462)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhccccc
Confidence 35666666666665542 00 12356677777766532
Q ss_pred CCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHH
Q 008533 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (562)
Q Consensus 402 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il 481 (562)
+...|..|.+|..+|+.++...++ ..++.++|.+...+.++++.+|.+|+.++|.+++... +....++++.++
T Consensus 338 ~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----~~~~~~~l~~~~ 410 (462)
T 1ibr_B 338 DDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE----PSQLKPLVIQAM 410 (462)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC----TTTTCTTTTTHH
T ss_pred ccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHH
Confidence 123499999999999999998774 4567889999999999999999999999999998542 123456788999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHccccc--cccHHHHHHHHHHHHh
Q 008533 482 MGLLKRILDTNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAFG 530 (562)
Q Consensus 482 ~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~--~~~l~~il~~L~~~l~ 530 (562)
+.++..++|+++.||.+|+++|+++++..++.+ .+|++++++.|+..++
T Consensus 411 ~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987654 5899999999887653
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.88 E-value=1.1e-19 Score=183.94 Aligned_cols=390 Identities=10% Similarity=0.069 Sum_probs=281.9
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCch------HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW------LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDS 168 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w------~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~ 168 (562)
+.+++.+.++++.+|..++..+..++.......+ +.+++.|.+.++++ ++.++..++.+|..++...+.....
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 102 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRI 102 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4567778888999999999999998864322221 16789999999988 8999999999999998754432110
Q ss_pred cCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccC-CCHHHHHHHHHHHH
Q 008533 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSND-PSAEVRKLVCAAFN 246 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~~~~~~L~ 246 (562)
-.-...+|.+++.++++++.+|..|+.++..+....+..-...+ ..+++.+...+.+ .+..++..++.+|.
T Consensus 103 -------~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 103 -------VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp -------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred -------HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 01246899999999999999999999999999875542111111 1345666666664 67899999999999
Q ss_pred HHHhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhh-hhHHHHHHHhhcccChhhHhhh
Q 008533 247 LLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESLV 324 (562)
Q Consensus 247 ~l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~~~~~~ 324 (562)
.++... +..-......+++.++..+.+.+++++..++..+..++... ....... -..+++.++..+...
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~------- 246 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHN------- 246 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCS-------
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCC-------
Confidence 999764 33222334567777777888888999999999999998752 1111111 123556665554310
Q ss_pred hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---chh-hhhHHHHHHHHcC
Q 008533 325 EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA 400 (562)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~ 400 (562)
.+.++..+..++..++...+. .++ ..+++.+.+.+++
T Consensus 247 ---------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 247 ---------------------------------------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred ---------------------------------------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 135788888899888765432 111 2578888899988
Q ss_pred CCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHH-hhhcCCCcchhhH-
Q 008533 401 SGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI-VQDIGHQNGREQF- 477 (562)
Q Consensus 401 ~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~~- 477 (562)
++ +.+|..|+.+|+.++.+..+.....+ ..++|.++..+.++++.||..|+|++++++... ++. ....+
T Consensus 288 ~~---~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~l~~ 359 (450)
T 2jdq_A 288 PK---ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ-----IKYLVE 359 (450)
T ss_dssp SS---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHH-----HHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH-----HHHHHH
Confidence 87 99999999999999987765554444 368889999999999999999999999998752 111 12122
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc-------cccccHHHH-----HHHHHHHHhhhhhhHHHHHHHHHH
Q 008533 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIG 545 (562)
Q Consensus 478 ~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~l~~i-----l~~L~~~l~~~~~~~~~~~~~~l~ 545 (562)
..+++.++..++++++.||..|+++|.+++..... .+.+|...+ ++.|..+..+.+...++.++.+|.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 439 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIE 439 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35889999999998999999999999999986532 245677766 566777666666666667777776
Q ss_pred HHH
Q 008533 546 TLA 548 (562)
Q Consensus 546 ~l~ 548 (562)
.+-
T Consensus 440 ~~~ 442 (450)
T 2jdq_A 440 HYF 442 (450)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=1.5e-19 Score=186.47 Aligned_cols=393 Identities=12% Similarity=0.108 Sum_probs=282.0
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCch-----HHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhccccc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSD 169 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w-----~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~ 169 (562)
..+++.|.++++.+|..++..+..++.......+ ..++|.|.++++++ ++.++..++.+|+.++...+.....
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~- 168 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV- 168 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH-
Confidence 4566778888899999999999999876432333 24688999999987 8999999999999998864432110
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
-.-...+|.|+..+.++++.+|..|+.++..++...+..-...+ ...++.+..++.+.++.++..++.+|..+
T Consensus 169 ------~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 169 ------VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp ------HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred ------HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 01246789999999999999999999999999875432111111 13466777777778899999999999999
Q ss_pred HhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhh-HHHHHHHhhcccChhhHhhhhh
Q 008533 249 IEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLP-RLVPVLLSNMIYADDDESLVEA 326 (562)
Q Consensus 249 ~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~-~l~~~l~~~l~~~~~~~~~~~~ 326 (562)
+... +..-......+++.++..+.+.+++++..++..+..++.. ........+. .+++.++..+...
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~--------- 311 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHE--------- 311 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCS---------
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCC---------
Confidence 9765 3322234456778888888888899999999999999875 2222222222 4566666554310
Q ss_pred hhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---c-hhhhhHHHHHHHHcCCC
Q 008533 327 EEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASG 402 (562)
Q Consensus 327 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~l~~~l~~~l~~~~ 402 (562)
.+.++..+..++..++...+. . +-..+++.+...+.+++
T Consensus 312 -------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 354 (530)
T 1wa5_B 312 -------------------------------------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354 (530)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred -------------------------------------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC
Confidence 135788888888888754322 1 12367888889999888
Q ss_pred CCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HH
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EK 479 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~ 479 (562)
|.+|..|+++|+.++.+..+.....+ ..++|.++..+.++++.||..|+|+|++++...... +....++ ..
T Consensus 355 ---~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~~~l~~~~ 428 (530)
T 1wa5_B 355 ---ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR---PDIIRYLVSQG 428 (530)
T ss_dssp ---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC---THHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHCC
Confidence 99999999999999987765544444 357888888888899999999999999999863210 0112222 24
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc-------cccccHHHH-----HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 008533 480 VLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIGTL 547 (562)
Q Consensus 480 il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~l~~i-----l~~L~~~l~~~~~~~~~~~~~~l~~l 547 (562)
+++.++..+.++++.|+..|+.+|.+++..... ...+|...+ ++.|..+..+.+...++.+..+|..+
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 888999999999999999999999999987632 234555444 55666666655566666777777665
Q ss_pred HH
Q 008533 548 AD 549 (562)
Q Consensus 548 ~~ 549 (562)
..
T Consensus 509 ~~ 510 (530)
T 1wa5_B 509 FG 510 (530)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.85 E-value=6e-19 Score=178.53 Aligned_cols=365 Identities=14% Similarity=0.083 Sum_probs=259.1
Q ss_pred cCchHHH---HHHHHHHhccCChhHHhHHHHHHHHHhhcc-hhcccccCCCCCcchh-H-hhHHHHHHhhcCC-CHHHHH
Q 008533 126 IAGWLEL---LQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDVPGLAECPI-N-IFLPRLLQFFQSP-HTSLRK 198 (562)
Q Consensus 126 ~~~w~~l---l~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~~~~~~~~~~~~-~-~il~~l~~~l~~~-~~~vr~ 198 (562)
...|++. ++.+++.++++++.+|..|+.+|+.++... ..... ..+ . .++|.+++.++++ ++.+|.
T Consensus 12 ~~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~--------~~~~~~~~i~~L~~~L~~~~~~~v~~ 83 (450)
T 2jdq_A 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID--------EVISTPGVVARFVEFLKRKENCTLQF 83 (450)
T ss_dssp ----------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHH--------HHHTSTTHHHHHHHHHTCTTCHHHHH
T ss_pred HHhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHH--------HHHHcCCcHHHHHHHHCCCCCHHHHH
Confidence 4689887 899999999999999999999999986522 11111 112 2 6899999999998 899999
Q ss_pred HHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCC-CC
Q 008533 199 LSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD-TD 275 (562)
Q Consensus 199 ~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~-~~ 275 (562)
.|++++..+....++.....+ ...++.+...+.++++.+|..++.+|..++...+..-...+. .+++.++..+.+ .+
T Consensus 84 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~ 163 (450)
T 2jdq_A 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR 163 (450)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC
Confidence 999999999875443222211 246778888888889999999999999999875443221221 456777777774 67
Q ss_pred hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC
Q 008533 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (562)
Q Consensus 276 ~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (562)
.++|..++..+..++..... ..-......+++.++..+...+
T Consensus 164 ~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~l~~~~------------------------------------- 205 (450)
T 2jdq_A 164 LTMTRNAVWALSNLCRGKSP-PPEFAKVSPCLNVLSWLLFVSD------------------------------------- 205 (450)
T ss_dssp HHHHHHHHHHHHHHHCCSSS-CCCGGGTGGGHHHHHHHTTCCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHccCC-------------------------------------
Confidence 89999999999999865211 1111223556666665553110
Q ss_pred CCCccccchhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH
Q 008533 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (562)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l 431 (562)
..++..+..++..++...++ .....+++.+.+.+.+++ |.+|..++.+|+.++.+..+.....+
T Consensus 206 ---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 206 ---------TDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND---YKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp ---------HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCc---hhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 13677788888888764322 112357788888888888 99999999999999987654332222
Q ss_pred H-HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 432 S-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 432 ~-~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
. .+++.+...+.++++.+|..|++++++++...... ....+ ..+++.++..+.++++.||..|+++|++++..
T Consensus 274 ~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-----IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-----HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 2 48899999999999999999999999998643221 12222 36788888999898999999999999999986
Q ss_pred c-cccccccH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 510 A-AEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 510 ~-~~~~~~~l-~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
. .+.....+ ..+++.|+.++...+.+.+..++.+|+.++...+.
T Consensus 349 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 349 GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 4 23333333 35788888888887777888999999999886553
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.85 E-value=1.4e-18 Score=180.71 Aligned_cols=434 Identities=15% Similarity=0.156 Sum_probs=293.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhh
Q 008533 23 QQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP 100 (562)
Q Consensus 23 ~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~il~~-~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~ 100 (562)
.+.++|.. +|+.+.-++..+.+ +|+.....+..+.. ..+.++.+|..|...+.+. ..++....+.+.+.+
T Consensus 57 l~~s~~~~-~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i-------~~~~~~~~l~~~l~~ 128 (591)
T 2vgl_B 57 CMQTDNLE-LKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI-------RVDKITEYLCEPLRK 128 (591)
T ss_dssp TTSSSCHH-HHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC-------CSGGGHHHHHHHHHH
T ss_pred HhCCCCHH-HHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHH
Confidence 34456666 77777777776544 45543333333322 2356677777665544433 245566677778888
Q ss_pred hhhCCchHHHHHHHHHHHHHHHhcCcCchH--HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc---------cc--
Q 008533 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV---------LD-- 167 (562)
Q Consensus 101 ~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~--~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~---------~~-- 167 (562)
++.++++.||+.|+.+++.++... ++.++ ++++.+.++++++++.++.+|+.+|+.++...+.. +.
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~L 207 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKL 207 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHH
Confidence 999999999999999999999865 45665 68999999999999999999999999998865421 00
Q ss_pred -c---cCCC------------C---CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc---hhhHHhchHHHHHH
Q 008533 168 -S---DVPG------------L---AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM---PSALFVSMDQYLQG 225 (562)
Q Consensus 168 -~---~~~~------------~---~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~---~~~~~~~~~~~l~~ 225 (562)
. +... + -......+++.+...+++.++.|+..|++++..+...+ ++.+......+.+.
T Consensus 208 l~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 287 (591)
T 2vgl_B 208 LTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPP 287 (591)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHH
T ss_pred HHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 0 0000 0 00123456777777788888999999999998876533 22233223344444
Q ss_pred HhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhH
Q 008533 226 LFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (562)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~ 305 (562)
+..+. ++++++|..++..|..++...++.+.+++..+ + +..+.+..+|..+++.+..++.... + ..
T Consensus 288 L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~n----v----~~ 353 (591)
T 2vgl_B 288 LVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLASQAN----I----AQ 353 (591)
T ss_dssp HHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSST----H----HH
T ss_pred HHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCChhh----H----HH
Confidence 44444 47899999999999999999998887776533 1 3334448899999999999886521 2 23
Q ss_pred HHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccc
Q 008533 306 LVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDE 385 (562)
Q Consensus 306 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~ 385 (562)
+++.+..++... .+.+|..+..+++.++..++.
T Consensus 354 iv~~L~~~l~~~----------------------------------------------d~~~r~~~v~aI~~la~~~~~- 386 (591)
T 2vgl_B 354 VLAELKEYATEV----------------------------------------------DVDFVRKAVRAIGRCAIKVEQ- 386 (591)
T ss_dssp HHHHHHHHTTSS----------------------------------------------CHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHhcC----------------------------------------------CHHHHHHHHHHHHHHHHhChh-
Confidence 444444333210 124788899999999987753
Q ss_pred hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHH
Q 008533 386 ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 386 ~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 464 (562)
....+++.+.+.+.+.. ..++..++.++..+....++.. ..+++.+...+. +.+|.+|.+++|++|+++...
T Consensus 387 ~~~~~v~~Ll~ll~~~~---~~v~~e~i~~l~~ii~~~p~~~----~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 387 SAERCVSTLLDLIQTKV---NYVVQEAIVVIRDIFRKYPNKY----ESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHSCSSC----CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHCcchH----HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 23567788888888776 7778888888998887654321 224555666676 467999999999999998765
Q ss_pred hhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-hh-hhhhHHHHHHH
Q 008533 465 VQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAF-GK-YQRRNLRIVYD 542 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l-~~-~~~~~~~~~~~ 542 (562)
. ..+.++..+++.+.+.++.||..++.++..+....++.. ...++.++... .+ .+.+.+..+++
T Consensus 460 ~----------~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~ 525 (591)
T 2vgl_B 460 D----------NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYI 525 (591)
T ss_dssp T----------THHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred c----------CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 3 134666777777777789999999999999987665433 23444444443 33 23355557777
Q ss_pred HHHHH
Q 008533 543 AIGTL 547 (562)
Q Consensus 543 ~l~~l 547 (562)
.++.+
T Consensus 526 y~~ll 530 (591)
T 2vgl_B 526 YWRLL 530 (591)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 66554
No 25
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.83 E-value=6.8e-18 Score=174.19 Aligned_cols=391 Identities=10% Similarity=0.089 Sum_probs=279.2
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCch-----HHHHHHHHHHhccCC-hhHHhHHHHHHHHHhhcchhccccc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSND-INHMEGAMDALSKICEDIPQVLDSD 169 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w-----~~ll~~l~~~l~~~~-~~~~~~al~~l~~i~~~~~~~~~~~ 169 (562)
+.+++.|.++++.+|..++..+..++........ ...+|.|++++++++ +.++..|+.+|+.++...+.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~- 155 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV- 155 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH-
Confidence 4667778888999999999999999876532222 246888999998876 899999999999999864432110
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhc-cCCCHHHHHHHHHHHH
Q 008533 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLS-NDPSAEVRKLVCAAFN 246 (562)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~-~~~~~~~~~~~~~~L~ 246 (562)
..-...+|.|+..+.+++..+|..|+.+++.++...+.. ...+. ..++.++..+ .+.++.++..++.+|.
T Consensus 156 ------~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 156 ------VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp ------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred ------HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 012358999999999999999999999999998654321 11111 2466677766 5678899999999999
Q ss_pred HHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhh-hHHHHHHHhhcccChhhHhhhh
Q 008533 247 LLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVE 325 (562)
Q Consensus 247 ~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~~~~~~~ 325 (562)
.++...+..-......+++.+...+.+.+++++..++..+..++... .......+ ..+++.++..+...
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~v~~Lv~lL~~~-------- 298 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--NDKIQAVIEAGVCPRLVELLLHP-------- 298 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC--HHHHHHHHHTTCHHHHHHHTTCS--------
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCHHHHHHHHHcCC--------
Confidence 99987654433445677888888888899999999999999998752 22222211 23556665555321
Q ss_pred hhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---ch-hhhhHHHHHHHHcCC
Q 008533 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLSAS 401 (562)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~~~ 401 (562)
.+.++..|..+|..++...+. .+ -..+++.+.+.+.++
T Consensus 299 --------------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~ 340 (528)
T 4b8j_A 299 --------------------------------------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN 340 (528)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred --------------------------------------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence 124778888888888764322 11 135678888888887
Q ss_pred -CCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--
Q 008533 402 -GDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-- 477 (562)
Q Consensus 402 -~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-- 477 (562)
+ +.+|..|+++|+.++.+..+.....+. .++|.++..+.+.++.+|..|+++|++++..... ....++
T Consensus 341 ~~---~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~-----~~~~~l~~ 412 (528)
T 4b8j_A 341 LK---KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH-----DQIKYLVS 412 (528)
T ss_dssp CC---HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH-----HHHHHHHH
T ss_pred Cc---HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHHH
Confidence 7 999999999999999876544433332 5788888888888999999999999999976211 123333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc-------cccccHHHH-----HHHHHHHHhhhhhhHHHHHHHHHH
Q 008533 478 EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE-------ELAPRLEII-----LQHLMMAFGKYQRRNLRIVYDAIG 545 (562)
Q Consensus 478 ~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~-------~~~~~l~~i-----l~~L~~~l~~~~~~~~~~~~~~l~ 545 (562)
..+++.++..|.++++.++..++.+|.+++..... ...+|...+ ++.+..+..+.+......+...+.
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36788999999999999999999999999976532 233444333 445555555555566667777776
Q ss_pred HHHHH
Q 008533 546 TLADA 550 (562)
Q Consensus 546 ~l~~~ 550 (562)
.+...
T Consensus 493 ~~~~~ 497 (528)
T 4b8j_A 493 AYWMD 497 (528)
T ss_dssp HHCC-
T ss_pred HHCCC
Confidence 65443
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.82 E-value=3.2e-18 Score=176.63 Aligned_cols=401 Identities=13% Similarity=0.100 Sum_probs=282.3
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh-hccCChhhHHHHHHHHhhhhhCC-chHHHHHHHHHHHHHHHhcC
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-YKSMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGG 125 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~-w~~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~ 125 (562)
+.+..++..|. +.++.+|..|+..|++.+... -..+..-....+.+.|+++|.++ ++.+|..++.+++.++....
T Consensus 87 ~~i~~lv~~L~---s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 87 QELPQMTQQLN---SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp CCHHHHHHHHS---CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 45677777776 457899999999999887542 01111111234556777888876 89999999999999987531
Q ss_pred --cCch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHH
Q 008533 126 --IAGW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSL 201 (562)
Q Consensus 126 --~~~w--~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al 201 (562)
...+ .+.++.|+++++++++.+|..++.+|+.++...+..-.. .....+++.++..+.+.+..++..|+
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~-------~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY-------VLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH-------HHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 1112 356888999999999999999999999999764332110 01245789999999999999999999
Q ss_pred HHHHHHHhhc-hhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHH
Q 008533 202 GSVNQFIMLM-PSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVA 279 (562)
Q Consensus 202 ~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~ 279 (562)
.++..++... +..-......+++.+..++.+.++.++..++.+|..++...++.....+. .+++.++..+.+.++.++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 9999998654 21111122345677777778888999999999999999766554444333 567777788888889999
Q ss_pred HHHhhhHHHhhccccchhhHHhhh-hHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCC
Q 008533 280 LEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDD 358 (562)
Q Consensus 280 ~~a~~~l~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 358 (562)
..|+..+..++... .......+ ..+++.++..+...
T Consensus 317 ~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~----------------------------------------- 353 (530)
T 1wa5_B 317 TPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP----------------------------------------- 353 (530)
T ss_dssp HHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-----------------------------------------
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC-----------------------------------------
Confidence 99999999998651 11122112 24566665555311
Q ss_pred ccccchhcHhhhHHHHHHHHHhhhccc---h-hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh--hhhhhHH
Q 008533 359 DDIVNVWNLRKCSAAALDVLSNVFGDE---I-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK--GLYPHLS 432 (562)
Q Consensus 359 ~d~~~~~~~r~~a~~~l~~l~~~~~~~---~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~--~~~~~l~ 432 (562)
.+.+|..|..+|..++...+.. + -..+++.+.+.+.+++ +.+|..|+.+|+.++.+... ....++.
T Consensus 354 -----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 354 -----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE---YKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp -----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 1468888999999988633221 1 1356778888888777 99999999999999986432 2222332
Q ss_pred --HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcC--CCcchhhHHH-----HHHHHHHHhccCCHHHHHHHHHHH
Q 008533 433 --EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG--HQNGREQFEK-----VLMGLLKRILDTNKRVQEAACSAF 503 (562)
Q Consensus 433 --~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~-----il~~l~~~l~d~~~~vr~~a~~al 503 (562)
.+++.+...+.++++.||..|+++++++....+.... .....++... .++.+...+.++++.|+..|..+|
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il 505 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3788999999999999999999999999987543100 0001223332 366777777888999999999999
Q ss_pred HHHHHH
Q 008533 504 ATLEEE 509 (562)
Q Consensus 504 ~~l~~~ 509 (562)
.+++..
T Consensus 506 ~~~~~~ 511 (530)
T 1wa5_B 506 ETYFGE 511 (530)
T ss_dssp HHHSSS
T ss_pred HHHCCc
Confidence 887754
No 27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.82 E-value=5.5e-17 Score=168.82 Aligned_cols=465 Identities=12% Similarity=0.115 Sum_probs=315.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhc---C-CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ---F-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~-~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
.++-..+.++|.. .|+.|...+--+.. + +.....++..+. +.+..+|+++...+.+.... .++....
T Consensus 16 ~~i~~~L~~~~~~-~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~---s~~~~~Krl~yl~l~~~~~~-----~~e~~~l 86 (591)
T 2vgl_B 16 FELKAELNNEKKE-KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQ---TDNLELKKLVYLYLMNYAKS-----QPDMAIM 86 (591)
T ss_dssp HHHHHHTTSSCHH-HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTS---SSCHHHHHHHHHHHHHHHHH-----SHHHHHT
T ss_pred HHHHHHHcCCCHH-HHHHHHHHHHHHHHCCCChHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccc-----CchHHHH
Confidence 3333444478877 88888887765332 1 223334444332 78899999999988887553 2444444
Q ss_pred HHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCC
Q 008533 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (562)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~ 173 (562)
+.+.+.+-|.++++.+|..+..+++.+. .++-++.+++.+.+++.++++.+|..|..++..++...++.+.
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~------ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE------ 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc------
Confidence 5567777888999999988877776664 4668899999999999999999999999999999986544221
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhh-HHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA-LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
-..+++.+.+.+.|+++.|+..|+.++..+....|+. .....+..+..+++.+.+.++..+..+++.+..+....
T Consensus 158 ----~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ----DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ----HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred ----cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 1368899999999999999999999999988765532 22223344555555555566777777777665443221
Q ss_pred ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccc-cchhhHHhhhhHHHHHHHhhcccChhhHhh--------
Q 008533 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ-LPHENLKEFLPRLVPVLLSNMIYADDDESL-------- 323 (562)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~-------- 323 (562)
.+....+++.+...+++.++.|+..|+.++..+...- ...+.++.....+.+.++..+. .+.++.-
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 2344678888888889999999999999999986420 1123344444555555543332 2222110
Q ss_pred h-hhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCC
Q 008533 324 V-EAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASG 402 (562)
Q Consensus 324 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~ 402 (562)
. ...|+. . ..+++.++.. .+ | .+++|..+.+.+..++ .+.-+..+++.+..++.+.+
T Consensus 309 i~~~~p~~-~---~~~~~~~~~~-----------~~-d---~~~Ir~~al~~L~~l~---~~~nv~~iv~~L~~~l~~~d 366 (591)
T 2vgl_B 309 IVQKRPEI-L---KQEIKVFFVK-----------YN-D---PIYVKLEKLDIMIRLA---SQANIAQVLAELKEYATEVD 366 (591)
T ss_dssp HHHHCCST-T---TTCTTTTSCC-----------TT-S---CHHHHHHHHHHHHHTC---CSSTHHHHHHHHHHHTTSSC
T ss_pred HHHhChHH-H---HHHHHhheec-----------cC-C---hHHHHHHHHHHHHHHC---ChhhHHHHHHHHHHHHhcCC
Confidence 0 111110 0 0112111100 01 1 1468887766665544 33445678888888888888
Q ss_pred CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHH
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 482 (562)
+..|..++.+++.++.... +....+++.++..+.+....|+..++.+++.+....+ ...+.++.
T Consensus 367 ---~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p---------~~~~~~v~ 430 (591)
T 2vgl_B 367 ---VDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP---------NKYESIIA 430 (591)
T ss_dssp ---HHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC---------SSCCTTHH
T ss_pred ---HHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc---------chHHHHHH
Confidence 9999999999999998754 4467799999999999999999999888888876532 22456788
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 483 GLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 483 ~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.+...+.+ ..+.++..++|++|.+.....+ .+.+++.+.+.+......++..++.+++.+....+
T Consensus 431 ~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p 496 (591)
T 2vgl_B 431 TLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKP 496 (591)
T ss_dssp HHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 88888864 4688999999999988665533 45666666655544445666688899888876543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.80 E-value=1.8e-17 Score=170.96 Aligned_cols=361 Identities=15% Similarity=0.083 Sum_probs=258.9
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhh
Q 008533 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIML 210 (562)
Q Consensus 132 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~ 210 (562)
-+|.+++.+.++++..+..|+.+|..++......... ...-..++|.|++.+.+++ +.+|..|+.++..+...
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~------~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIE------EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHH------HHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHH------HHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 4788888899999999999999999987654311000 0123468999999999886 99999999999999875
Q ss_pred chhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhc-CCCChhHHHHHhhhHH
Q 008533 211 MPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVN-KDTDDDVALEACEFWH 287 (562)
Q Consensus 211 ~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~-~~~~~~v~~~a~~~l~ 287 (562)
.++.....+. ..++.+..++.++++.++..++.+|..++...+..-..... ..++.++..+ .+.+..++..++.++.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4432222111 35777888888889999999999999998765442211111 3566667776 5678899999999999
Q ss_pred HhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcH
Q 008533 288 SYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (562)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (562)
.++...... .......+++.++..+... .+.+
T Consensus 229 ~L~~~~~~~--~~~~~~~~l~~L~~lL~~~----------------------------------------------~~~v 260 (528)
T 4b8j_A 229 NFCRGKPQP--SFEQTRPALPALARLIHSN----------------------------------------------DEEV 260 (528)
T ss_dssp HHHCSSSCC--CHHHHTTHHHHHHHHTTCC----------------------------------------------CHHH
T ss_pred HHHcCCCCC--cHHHHHHHHHHHHHHHCCC----------------------------------------------CHHH
Confidence 998763111 1123455666666555311 1246
Q ss_pred hhhHHHHHHHHHhhhccc----hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhc
Q 008533 368 RKCSAAALDVLSNVFGDE----ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLL 442 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~~----~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l 442 (562)
+..+..+|..++...+.. +-..+++.+.+.+.+++ +.+|..|+.+|+.++.+........+ ..++|.+...+
T Consensus 261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL 337 (528)
T 4b8j_A 261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS---PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL 337 (528)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC---hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH
Confidence 777888888887543321 12357888889999888 99999999999999987654433333 34788888888
Q ss_pred CCC-ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--H
Q 008533 443 DDK-FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--E 519 (562)
Q Consensus 443 ~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~ 519 (562)
.++ ++.+|..|+|+|++++...+.. ...-.-..+++.|+..|.+.++.+|..|+++|++++.........++ .
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~----~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~ 413 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQ----IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSE 413 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHH----HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 888 9999999999999998632211 01111236778888888888999999999999999987533333333 3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 520 ~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
.+++.|+.++...+.+.+..++++|+.+....+.
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888887778888999999999876654
No 29
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.79 E-value=8.1e-16 Score=169.67 Aligned_cols=482 Identities=10% Similarity=0.097 Sum_probs=299.5
Q ss_pred HhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-c--C--------C-C----hHHHHHHHHhhccCCCHHHHHHHHHH
Q 008533 11 EQGFNEICRLLEQQISPSSTADKSQIWQQLQQYS-Q--F--------P-D----FNNYLAFILARAEGKSVEIRQAAGLL 74 (562)
Q Consensus 11 ~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~-~--~--------~-~----~~~~l~~il~~~~~~~~~~R~~a~~~ 74 (562)
|+....|.+++.. .+.+.+ +|..|...|++.- + . | + .-..++..+.+ . +..+|..++..
T Consensus 34 p~~~~~L~~il~~-~~~~~~-vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~--~-~~~ir~~l~~~ 108 (960)
T 1wa5_C 34 DGFGLTLLHVIAS-TNLPLS-TRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMIS--L-PNNLQVQIGEA 108 (960)
T ss_dssp TTHHHHHHHHHHC-TTSCHH-HHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CCCCHH-HHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHh--C-CHHHHHHHHHH
Confidence 3444455555542 123456 9999999998732 1 1 1 1 12355666664 3 48999999988
Q ss_pred HHHHHHH----hhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC---c--CchHH-------HHHHH--
Q 008533 75 LKNNLRT----AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG---I--AGWLE-------LLQAL-- 136 (562)
Q Consensus 75 lk~~i~~----~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~---~--~~w~~-------ll~~l-- 136 (562)
+...... .|+. +.+.|++.+.+++...+..+..++..+++... . +.+++ +++.+
T Consensus 109 ia~ia~~d~p~~Wp~--------ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~ 180 (960)
T 1wa5_C 109 ISSIADSDFPDRWPT--------LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLN 180 (960)
T ss_dssp HHHHHHHHSTTTCTT--------HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccchhH--------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Confidence 8887765 4543 55677777877777788888889999887531 1 11221 12222
Q ss_pred -----HHHhccCChh---HHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC------C---------
Q 008533 137 -----VTCLDSNDIN---HMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------H--------- 193 (562)
Q Consensus 137 -----~~~l~~~~~~---~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~------~--------- 193 (562)
.+.++++... .+ .++.++..+++.+......+.+..+...+...++.+.+.+... +
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~ 259 (960)
T 1wa5_C 181 LLKTVDEQITANENNKASLN-ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVL 259 (960)
T ss_dssp HHHHHHHHTTCCC--CHHHH-HHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHH
T ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHH
Confidence 2234443221 22 2222222222222110000000001123455566666655321 1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhcc-----CCCHHHHHHHHHHHHHHHhhC--ccchh--hhHHHHH
Q 008533 194 TSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSN-----DPSAEVRKLVCAAFNLLIEVR--PSFLE--PHLRNLF 264 (562)
Q Consensus 194 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~~~~~~~~~~L~~l~~~~--~~~~~--~~l~~i~ 264 (562)
..+|+.+++++..++...++.+.++++.+++.+++.+. ..++.++..+++.+..+++.. ...+. +++..++
T Consensus 260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li 339 (960)
T 1wa5_C 260 IKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence 35789999999999887777777777777776665442 345788999999998887643 23444 7777777
Q ss_pred -HHHHhhcC---------CCC--------------hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhh
Q 008533 265 -EYMLQVNK---------DTD--------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDD 320 (562)
Q Consensus 265 -~~~~~~~~---------~~~--------------~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~ 320 (562)
+.++..+. +.+ ...|..|.+++..++.. ..+ ..++.+++.+...+.....
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~--~~~---~v~~~~l~~i~~~l~~~~~- 413 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEK--NEV---LVTNIFLAHMKGFVDQYMS- 413 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH--CHH---HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHH--cch---hHHHHHHHHHHHHHHHhcc-
Confidence 45444321 111 24577777888888775 222 2223333333222210000
Q ss_pred HhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh-----cc-------chhh
Q 008533 321 ESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GD-------EILP 388 (562)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-----~~-------~~~~ 388 (562)
+ ....|..|.+|.-+++.++... |. .+.+
T Consensus 414 -------------------------------~--------~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 414 -------------------------------D--------PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred -------------------------------C--------cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 0 0124889999999999998642 11 2223
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHh---
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV--- 465 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--- 465 (562)
.+...+...+++++...+.+|.+|++++|.+++... ..++..+++.++..+.|+++.||.+|++++.++++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccc
Confidence 333445555666611128999999999999998763 35788999999999999999999999999999987421
Q ss_pred ---hhcCCCcchhhHHHHHHHHHHHhccCC---HH--HHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh----h
Q 008533 466 ---QDIGHQNGREQFEKVLMGLLKRILDTN---KR--VQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY----Q 533 (562)
Q Consensus 466 ---~~~~~~~~~~~~~~il~~l~~~l~d~~---~~--vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~----~ 533 (562)
....+....+|++++++.++..++... .. ....+..+|+.++...++.+.||++.+++.|...+... +
T Consensus 532 ~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~ 611 (960)
T 1wa5_C 532 SPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPS 611 (960)
T ss_dssp SCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCC
T ss_pred cccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 000112467999999999999987641 11 44688999999999999999999999999999988764 2
Q ss_pred hhHHH-HHHHHHHHHHHHHhhh
Q 008533 534 RRNLR-IVYDAIGTLADAVGFE 554 (562)
Q Consensus 534 ~~~~~-~~~~~l~~l~~~~~~~ 554 (562)
+...+ .++++|+.++.+.+++
T Consensus 612 ~~~~~~~~~e~l~~l~~~~~~~ 633 (960)
T 1wa5_C 612 NPRFTHYTFESIGAILNYTQRQ 633 (960)
T ss_dssp CHHHHHHHHHHHHHHHHTSCGG
T ss_pred CcHHHHHHHHHHHHHHhcCCcc
Confidence 33344 6999999999985543
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.77 E-value=3.7e-15 Score=155.56 Aligned_cols=449 Identities=12% Similarity=0.092 Sum_probs=271.6
Q ss_pred CHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHH-hhccCCCHHHHHHHHHHHHHHHHHhhccCC
Q 008533 10 QEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFIL-ARAEGKSVEIRQAAGLLLKNNLRTAYKSMS 87 (562)
Q Consensus 10 ~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~il-~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~ 87 (562)
.+....++.+++. |+|-+ .|+-+.-++..+.. +|+........+ .+..+.++.+|-.|...+.+.. .
T Consensus 68 ~~~~~~~vik~~~---s~~~~-~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~ 136 (618)
T 1w63_A 68 AHFGQLECLKLIA---SQKFT-DKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------S 136 (618)
T ss_dssp CGGGHHHHHHHHH---SSSHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------C
T ss_pred CcchHHHHHHHHc---CCchH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------C
Confidence 3334444444443 67777 88888887777654 555433222222 2223677888888877776653 3
Q ss_pred hhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 88 PSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 88 ~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
++....+.+.+.+++.++++.||+.|+.+++.++...+ +..+.+++.+..++.++++.++.+|+.+|..++..-+...
T Consensus 137 ~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~- 214 (618)
T 1w63_A 137 SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML- 214 (618)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH-
Confidence 44556667778888889999999999999999998753 3445677788888888899999999999999887543210
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcC---------------CCHHHHHHHHHHHHHHHhhchhh---HHhc-----------
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQS---------------PHTSLRKLSLGSVNQFIMLMPSA---LFVS----------- 218 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~---------------~~~~vr~~al~~l~~~~~~~~~~---~~~~----------- 218 (562)
.....++|.+++.+.+ .++..+...++++..+....|+. +.+.
T Consensus 215 --------~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 215 --------AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp --------HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 0123344444443331 35666666777776665432210 0000
Q ss_pred ------------------------hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCC
Q 008533 219 ------------------------MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDT 274 (562)
Q Consensus 219 ------------------------~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~ 274 (562)
....++.+..++.+.++++|..++.+|..++...+..+.+|...++. +..+.
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~d~ 362 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLKDL 362 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----GGGSS
T ss_pred cchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH----HccCC
Confidence 01123444555666788899999999999998888877777665554 66788
Q ss_pred ChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCC
Q 008533 275 DDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (562)
Q Consensus 275 ~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 354 (562)
+..+|..|++.+..++.... +. .++..++.++...
T Consensus 363 d~~Ir~~alelL~~l~~~~n----v~----~iv~eL~~~l~~~------------------------------------- 397 (618)
T 1w63_A 363 DVSIKRRAMELSFALVNGNN----IR----GMMKELLYFLDSC------------------------------------- 397 (618)
T ss_dssp CHHHHHHHHHHHHHHCCSSS----TH----HHHHHHHHHHHHC-------------------------------------
T ss_pred ChhHHHHHHHHHHHHccccc----HH----HHHHHHHHHHHhC-------------------------------------
Confidence 89999999999999987532 22 2333333322210
Q ss_pred CCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH
Q 008533 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (562)
Q Consensus 355 ~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~ 434 (562)
+ ..+|..+..++..++..+++. ....++.+.+.+.+.. -.++..++..+..+....++.....+..+
T Consensus 398 ---d------~e~r~~~v~~I~~la~k~~~~-~~~~v~~ll~lL~~~~---~~v~~~~~~~l~~ii~~~p~l~~~~v~~L 464 (618)
T 1w63_A 398 ---E------PEFKADCASGIFLAAEKYAPS-KRWHIDTIMRVLTTAG---SYVRDDAVPNLIQLITNSVEMHAYTVQRL 464 (618)
T ss_dssp ---C------HHHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHHHTG---GGSCSSHHHHHHHHHHHSCSTHHHHHHHH
T ss_pred ---C------HHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 0 137888999999999887542 2345566666666554 44555566666776654433222233334
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh-c-C--C-CcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD-I-G--H-QNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~-~--~-~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
+..+.... .+..+...++|++|+++..+... . + | ......+..++..+++.. ..++.||..+..++..+...
T Consensus 465 ~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 465 YKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHh
Confidence 44333221 23344457899999999877420 0 0 0 001122233333333322 45799999999999988876
Q ss_pred ccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 008533 510 AAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 510 ~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~ 548 (562)
.++. .+.+..+ |-....+.+.+.+..+++.+..+.
T Consensus 542 ~~~~-~~~l~~~---L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 542 FTCT-VNRIKKV---VSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp CSSC-HHHHHHH---HHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred Ccch-HHHHHHH---HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 6432 2223333 222333444566667777766654
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.77 E-value=3.1e-15 Score=156.36 Aligned_cols=458 Identities=10% Similarity=-0.008 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHhhcCC-------ChHHHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHhhccCChhh-HHHHHHHHhhhh
Q 008533 32 DKSQIWQQLQQYSQFP-------DFNNYLAFILARA-EGKSVEIRQAAGLLLKNNLRTAYKSMSPSN-QQYIKSELLPCL 102 (562)
Q Consensus 32 ~r~~A~~~L~~~~~~~-------~~~~~l~~il~~~-~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~-~~~i~~~ll~~l 102 (562)
.|..|.-.|.+++..- .|-..+-+.+... ...+.+-+.-|+..+.+.+...|..-..-. .+...+.++.++
T Consensus 220 ~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll 299 (810)
T 3now_A 220 SSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMA 299 (810)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHh
Confidence 8999999999977521 2433333333221 144555556677777777765544311111 224556778888
Q ss_pred hCCchHHHHHHHHHHHHHHHhcC-cCch-HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCC-cchhH
Q 008533 103 GAADRHIRSTVGTIVSVVVQLGG-IAGW-LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA-ECPIN 179 (562)
Q Consensus 103 ~~~~~~vr~~~~~~i~~i~~~~~-~~~w-~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~-~~~~~ 179 (562)
.++++.++..+..+++.++.... .... ..-+|.|..+++++++..|..|+.+|..+.......-. . ..+ +..+.
T Consensus 300 ~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~--~-~~~~~g~i~ 376 (810)
T 3now_A 300 TTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA--I-RPFGDGAAL 376 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS--C-CSSTTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc--c-cchhhccHH
Confidence 89999999999999999776521 1111 22248899999888888899999999888754321100 0 111 23467
Q ss_pred hhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchh--hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc-
Q 008533 180 IFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPS--ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS- 254 (562)
Q Consensus 180 ~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~- 254 (562)
.+++.+.+++.++ +.+++..|++++..+....+. .+.. -..+++.++.++++.+..+...+..+|..++....+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q 455 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhh
Confidence 8899999999988 889999999999998764321 1111 135678888888778889999999999999874310
Q ss_pred ---------------------------chh----hhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhh
Q 008533 255 ---------------------------FLE----PHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (562)
Q Consensus 255 ---------------------------~~~----~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 302 (562)
... ..+. ..+|.+...+.+.++.++..|...+..++..+.....+-.
T Consensus 456 ~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~- 534 (810)
T 3now_A 456 EMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ- 534 (810)
T ss_dssp CCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-
T ss_pred hhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 000 0011 3567777888889999999999999999865222111111
Q ss_pred hhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh
Q 008533 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (562)
Q Consensus 303 l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~ 382 (562)
...+|.++..+.... ...+..|..+|..++...
T Consensus 535 -~Gaip~Lv~LL~s~~----------------------------------------------~~~k~~Aa~AL~nL~~~~ 567 (810)
T 3now_A 535 -EGGVKALLRMALEGT----------------------------------------------EKGKRHATQALARIGITI 567 (810)
T ss_dssp -TTHHHHHHHHHHSSC----------------------------------------------HHHHHHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHccCC----------------------------------------------HHHHHHHHHHHHHHhcCC
Confidence 234555555443110 135777889999888653
Q ss_pred cc-ch-----hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChhHHHHHHH
Q 008533 383 GD-EI-----LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCW 455 (562)
Q Consensus 383 ~~-~~-----~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~d~~~~vr~~a~~ 455 (562)
.. .. ....+|.+.+++.++. +...+..|+.+|+.++.+..+.....+. ..+|.+...+.+.++.||.+|++
T Consensus 568 ~p~~~~~~~~~~~aIppLv~LL~~~~--~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~ 645 (810)
T 3now_A 568 NPEVSFSGQRSLDVIRPLLNLLQQDC--TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ 645 (810)
T ss_dssp CHHHHTTTHHHHHTHHHHHHTTSTTS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred ChhhhhcchhhhcHHHHHHHHhCCCC--cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence 22 11 1236677778887542 1455678999999999875432222222 36888888888999999999999
Q ss_pred HHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh
Q 008533 456 TLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK 531 (562)
Q Consensus 456 ~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~ 531 (562)
++++++..-. ....+. ...++.|+..+..++..+|..|+++|++++..........+ ...++.|+.++..
T Consensus 646 ~L~NLa~~~~------~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 646 CLCNLVMSED------VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp HHHHHTTSHH------HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred HHHHHhCChH------HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 9999986422 123333 25788899999888899999999999999974322222222 3567788888888
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 008533 532 YQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 532 ~~~~~~~~~~~~l~~l~~ 549 (562)
.+.+.++.+..+|+.+..
T Consensus 720 ~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 720 PSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 888888899999988876
No 32
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.77 E-value=2.7e-15 Score=156.81 Aligned_cols=461 Identities=13% Similarity=0.031 Sum_probs=309.0
Q ss_pred HHHHHHHhc-CCCCHHHHHHHHHHHHHhhc-----------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--
Q 008533 17 ICRLLEQQI-SPSSTADKSQIWQQLQQYSQ-----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA-- 82 (562)
Q Consensus 17 l~~~l~~~~-s~d~~~~r~~A~~~L~~~~~-----------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~-- 82 (562)
+.+.+..-+ .++.+ .+-.|...+..+.. ..++++.++.++. +.+..++..|...+.+.-.+.
T Consensus 248 ~~~~~~~~~~~~~~~-~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~---s~~~~~q~~A~~al~~aa~~~~~ 323 (810)
T 3now_A 248 IDEYIKDKLLAPDME-SKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMAT---TDDELQQRVACECLIAASSKKDK 323 (810)
T ss_dssp HHHHHHHHHSSCCHH-HHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHH---SSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHhccCChH-hHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCcHH
Confidence 333343333 34555 55566666666431 4578888888887 457888888888777743221
Q ss_pred hccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHh---cCc------CchHHHHHHHHHHhccC--ChhHHhHH
Q 008533 83 YKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL---GGI------AGWLELLQALVTCLDSN--DINHMEGA 151 (562)
Q Consensus 83 w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~---~~~------~~w~~ll~~l~~~l~~~--~~~~~~~a 151 (562)
...+. ...+ +.|..++.+++..+|..++.++..+... +++ +....+++.+.+++.++ ++..+..+
T Consensus 324 R~~I~---~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~A 399 (810)
T 3now_A 324 AKALC---EQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399 (810)
T ss_dssp HHTTH---HHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHH
T ss_pred HHHHH---HcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 11111 1233 5666677777889999999999999853 211 23578899999999987 88999999
Q ss_pred HHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch-h-----------------
Q 008533 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP-S----------------- 213 (562)
Q Consensus 152 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~-~----------------- 213 (562)
+++|.+++........- ..-..++|.|+.++++++..++..|++++.++....+ .
T Consensus 400 veaLayLS~~~~vk~~l-------v~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v 472 (810)
T 3now_A 400 ADGLAYLTLDAECKEKL-------IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHI 472 (810)
T ss_dssp HHHHHHHTTSHHHHHHH-------HHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSC
T ss_pred HHHHHHHhCCcHHHHHH-------HHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccC
Confidence 99999998765442110 0114689999999999999999999999999987321 0
Q ss_pred ----------hHHhchH-----HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhcCCCCh
Q 008533 214 ----------ALFVSMD-----QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNKDTDD 276 (562)
Q Consensus 214 ----------~~~~~~~-----~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~--~i~~~~~~~~~~~~~ 276 (562)
....... ..++.+..++.++++.++..+.++|..++.. ++. +..+- ..++.++..+.+.++
T Consensus 473 ~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~-r~~Vv~~Gaip~Lv~LL~s~~~ 550 (810)
T 3now_A 473 PEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KEL-RGKVVQEGGVKALLRMALEGTE 550 (810)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHHHHSSCH
T ss_pred ccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH-HHHHHHCCCHHHHHHHHccCCH
Confidence 0110011 3467777888888999999999999999854 332 23222 367777777778888
Q ss_pred hHHHHHhhhHHHhhccccchhhHH-hhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC
Q 008533 277 DVALEACEFWHSYFEAQLPHENLK-EFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (562)
Q Consensus 277 ~v~~~a~~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (562)
..+..|...+..++........+. ......+|.++..+.. +.+
T Consensus 551 ~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~-~~~----------------------------------- 594 (810)
T 3now_A 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ-DCT----------------------------------- 594 (810)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST-TSC-----------------------------------
T ss_pred HHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC-CCc-----------------------------------
Confidence 899999999998876421111110 1122356666655431 100
Q ss_pred CCCccccchhcHhhhHHHHHHHHHhhhcc---chh-hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH
Q 008533 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (562)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l 431 (562)
--.+..|..+|..|+..-++ .++ ...++.+.+++.+++ ..+|.+|+.+++.++.+.. ....++
T Consensus 595 ---------~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~---~~Vq~~A~~~L~NLa~~~~-~~~~~v 661 (810)
T 3now_A 595 ---------ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH---LYLTRAAAQCLCNLVMSED-VIKMFE 661 (810)
T ss_dssp ---------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC---TTHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChH-HHHHHH
Confidence 01223466677777654211 122 246788888888887 8999999999999997543 333444
Q ss_pred H--HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 008533 432 S--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLE 507 (562)
Q Consensus 432 ~--~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~ 507 (562)
. ..++.++..+..++..+|..|+|+|++++...+.. ....+ ...++.|+..+.+++..+|..|++++.+++
T Consensus 662 ~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~-----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 662 GNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKC-----CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp SSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHH-----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHH-----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 2 47899999999999999999999999999843221 12223 367888999999999999999999999998
Q ss_pred HHccccccccH--HHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHH
Q 008533 508 EEAAEELAPRL--EIILQHLMMAFGKY---QRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 508 ~~~~~~~~~~l--~~il~~L~~~l~~~---~~~~~~~~~~~l~~l~~ 549 (562)
....+. ..++ ..+++.|..++... +.+....+.++|..+.+
T Consensus 737 ~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 737 NAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred hCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 743211 1111 25666777777554 34556678888877654
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.75 E-value=1.2e-15 Score=163.37 Aligned_cols=460 Identities=15% Similarity=0.086 Sum_probs=299.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~----------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
..|.++|. ++|.. +|..|...|..+.. .++.+..|+..|.+ +.++.+|..|+..|++..... .
T Consensus 153 p~Lv~lL~---~~d~~-vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~-~ 225 (780)
T 2z6g_A 153 PELTKLLN---DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHR-E 225 (780)
T ss_dssp HHHHHHHH---CSCHH-HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSH-H
T ss_pred HHHHHHHC---CCCHH-HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCc-h
Confidence 34444444 67777 99999999998764 34678888888886 568999999999999843221 1
Q ss_pred cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC--ch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhh
Q 008533 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICE 160 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~ 160 (562)
....-......+.|+.+|.++++.+|..++.++..++...... .. ...++.|++.+.++++.++..++.+|..++.
T Consensus 226 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 226 GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 0000111234557788888889999999999999999864221 11 3578899999999888889999889988775
Q ss_pred cchhcccccCCCCCcchhHhhHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHH
Q 008533 161 DIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHT-SLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVR 238 (562)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ 238 (562)
.....-. . ..-...++.++..+.+.+. ..+..++.++..+... +......+ ...++.+..++.+.++.++
T Consensus 306 ~~~e~~~-~------i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~ 377 (780)
T 2z6g_A 306 GNQESKL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLV 377 (780)
T ss_dssp TCHHHHH-H------HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHH
T ss_pred CChHHHH-H------HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHH
Confidence 3322110 0 0112457788888887655 4556777888877652 22111111 1357788888888888999
Q ss_pred HHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhh-hHHHHHHHhhcccC
Q 008533 239 KLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFL-PRLVPVLLSNMIYA 317 (562)
Q Consensus 239 ~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l-~~l~~~l~~~l~~~ 317 (562)
..++.+|..++...+.. .....+++.++..+.+.+++++..|...+..++.... ....... ...++.++..+...
T Consensus 378 ~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~~ 453 (780)
T 2z6g_A 378 QNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGIEALVRTVLRA 453 (780)
T ss_dssp HHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHHcc
Confidence 99999999998776543 2235688888888888999999999999999987521 1111111 12444444443210
Q ss_pred hhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc------ch-hhhh
Q 008533 318 DDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EI-LPTL 390 (562)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~------~~-~~~l 390 (562)
.+ .-.++..|..+|..|+...++ .+ ....
T Consensus 454 ~~--------------------------------------------~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~ 489 (780)
T 2z6g_A 454 GD--------------------------------------------REDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489 (780)
T ss_dssp TT--------------------------------------------CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTC
T ss_pred CC--------------------------------------------HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCC
Confidence 00 003677788888887643222 11 1245
Q ss_pred HHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCC----------------------h
Q 008533 391 MPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKF----------------------P 447 (562)
Q Consensus 391 ~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~----------------------~ 447 (562)
++.+.+.+.+++. |.+|.+++.+|+.++.+.... .... ..+++.++..+.+.+ .
T Consensus 490 l~~L~~lL~~~~~--~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~ 566 (780)
T 2z6g_A 490 LPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 566 (780)
T ss_dssp HHHHHHTTSTTCC--HHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHH
T ss_pred HHHHHHHhcCCCh--HHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChH
Confidence 7778888876542 799999999999999654321 1111 135565655554433 3
Q ss_pred hHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHH--HHH
Q 008533 448 LIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEI--ILQ 523 (562)
Q Consensus 448 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~--il~ 523 (562)
.++..++.+|++++..-. ....+ ...++.|+..|.+.++.|+..|+.+|.++... +.....+.. .++
T Consensus 567 ~v~~~a~~aL~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~ 637 (780)
T 2z6g_A 567 EIVEACTGALHILARDIH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATA 637 (780)
T ss_dssp HHHHHHHHHHHHHTTSHH-------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcChh-------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHH
Confidence 456666666666653211 11111 34678889999999999999999999998732 111222222 456
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 524 HLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 524 ~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
.|..++.+.+...++.+..+|..++.
T Consensus 638 ~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 638 PLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67777777777778888899888876
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.75 E-value=1.6e-15 Score=156.62 Aligned_cols=451 Identities=13% Similarity=0.055 Sum_probs=290.3
Q ss_pred CCCCHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHH---
Q 008533 26 SPSSTADKSQIWQQLQQYSQ----------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ--- 92 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~~~~----------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~--- 92 (562)
++|.. +|..|...|.++.. .++.+..|...|.+ +.++.+|..|+..|++.... ++.+.
T Consensus 28 ~~~~~-v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~--~~~~~~~~~a~~~L~~ls~~------~~~~~~i~ 98 (529)
T 1jdh_A 28 DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH------REGLLAIF 98 (529)
T ss_dssp CSCHH-HHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTS------HHHHHHHH
T ss_pred CCCHH-HHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc--CCCHHHHHHHHHHHHHHHcC------chhHHHHH
Confidence 56777 99999999998753 23567778888875 56889999999999885332 12222
Q ss_pred --HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--Cc--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcc
Q 008533 93 --YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 93 --~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~--w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~ 166 (562)
...+.|++.+.++++.++..++.++..++..... .. -.+.+|.|.+.++++++..+..+..+|..++...+..-
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~ 178 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 2345677888888999999999999999987422 11 15678999999999999999988889988876432211
Q ss_pred cccCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhchhhHHhch--HHHHHHHhhhccCCCHHHHHHHHH
Q 008533 167 DSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSNDPSAEVRKLVCA 243 (562)
Q Consensus 167 ~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~ 243 (562)
. . -.-...++.++..+.+.+ ...+..+..++..+... +. ....+ ...++.+...+.+.++.++..++.
T Consensus 179 ~-~------i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 179 L-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp H-H------HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred H-H------HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 0 0 011245777888887654 45667778888877642 22 11111 145778888888888999999999
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc-chhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 244 ~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
+|..++...+.. .....+++.+...+.+.+++++..+...+..++.... ....+.. ...++.++..+...+
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~v~~L~~ll~~~~---- 321 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--VGGIEALVRTVLRAG---- 321 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHH--TTHHHHHHHHHHHHT----
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHHHHHHccC----
Confidence 999998775443 2345778888888888999999999999999977521 1111111 123444444332100
Q ss_pred hhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc------ch-hhhhHHHHH
Q 008533 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------EI-LPTLMPVIQ 395 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~------~~-~~~l~~~l~ 395 (562)
..+.++..+..+|..++..-+. .+ ....++.+.
T Consensus 322 ----------------------------------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~ 361 (529)
T 1jdh_A 322 ----------------------------------------DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361 (529)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence 0124677788888888653222 11 124577888
Q ss_pred HHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHH--hH-----------
Q 008533 396 AKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSR--FS----------- 461 (562)
Q Consensus 396 ~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~--l~----------- 461 (562)
+.+.+++. |..|..++.+++.++.+.... .... ..++|.++..+.+.++.+|..|+|++++ +.
T Consensus 362 ~lL~~~~~--~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~ 438 (529)
T 1jdh_A 362 KLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG 438 (529)
T ss_dssp HTTSTTCC--HHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHH
T ss_pred HHhccccc--hHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHH
Confidence 88886541 799999999999999764322 2222 2478888888888888999988888876 11
Q ss_pred --HHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhhhh
Q 008533 462 --KFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRR 535 (562)
Q Consensus 462 --~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~~~ 535 (562)
..+............+ ..+++.++..+.++++.|+..|+.+|.++...- .....+ ...++.|..++.+.+..
T Consensus 439 ~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--~~~~~i~~~~~~~~L~~l~~~~~~~ 516 (529)
T 1jdh_A 439 CTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--EAAEAIEAEGATAPLTELLHSRNEG 516 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--HHHHHHHHcCChHHHHHHhcCCCHH
Confidence 1111000000000011 245678888899999999999999999887321 111111 13446667777777777
Q ss_pred HHHHHHHHHHHH
Q 008533 536 NLRIVYDAIGTL 547 (562)
Q Consensus 536 ~~~~~~~~l~~l 547 (562)
.+..+..++..+
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777888887654
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.73 E-value=2.8e-15 Score=158.15 Aligned_cols=455 Identities=14% Similarity=0.069 Sum_probs=300.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhh
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQFP----------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~----------~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w 83 (562)
+..|.++|. ++|.. +|..|...|.++...+ +.+..|...|.+ +.++.+|..|+..|++....
T Consensus 16 i~~Lv~lL~---~~~~~-vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~--~~~~~~~~~A~~~L~~Ls~~-- 87 (644)
T 2z6h_A 16 IPELTKLLN---DEDQV-VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN--TNDVETARCTAGTLHNLSHH-- 87 (644)
T ss_dssp HHHHHHHHT---CSCHH-HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHc---CCCHH-HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc--CCCHHHHHHHHHHHHHHhcC--
Confidence 344444444 57777 9999999999977532 346677777875 56889999999888864332
Q ss_pred ccCChhhHH-----HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC--ch--HHHHHHHHHHhccCChhHHhHHHHH
Q 008533 84 KSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDA 154 (562)
Q Consensus 84 ~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~~~~~~al~~ 154 (562)
++.+. ...+.|+++|.++++.+|..++.++..++...... .. ...++.|++.++++++..+..++.+
T Consensus 88 ----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 88 ----REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp ----HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred ----hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 11222 24456778888889999999999999999874221 11 4578999999999988888888889
Q ss_pred HHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhchhhHHhch--HHHHHHHhhhcc
Q 008533 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH-TSLRKLSLGSVNQFIMLMPSALFVSM--DQYLQGLFLLSN 231 (562)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vr~~al~~l~~~~~~~~~~~~~~~--~~~l~~l~~~~~ 231 (562)
|..++...+..-. . -.-...++.+++.+.+.+ ..++..++.++..+... +. ....+ ...++.+...+.
T Consensus 164 L~~La~~~~~~~~-~------i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~-~~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 164 LQILAYGNQESKL-I------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SS-NKPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp HHHHHTTCHHHHH-H------HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TT-HHHHHHHTTHHHHHHTTTT
T ss_pred HHHHHhcCcHHHH-H------HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cc-cHHHHHHCCCHHHHHHHHh
Confidence 9888864332110 0 011346788888888764 56788889998888752 22 11111 135778888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc-chhhHHhhhhHHHHHH
Q 008533 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVL 310 (562)
Q Consensus 232 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~~l~~l~~~l 310 (562)
+.+..++..++.+|..++...+.. .....+++.++..+.+.+++++..|...+..++.... ....+.. ...++.+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~--~g~v~~L 310 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ--VGGIEAL 310 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHH
Confidence 888999999999999998775443 3345788888888888899999999999999887521 1111111 1244555
Q ss_pred HhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc------
Q 008533 311 LSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD------ 384 (562)
Q Consensus 311 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~------ 384 (562)
+..+...++ .+.++..+..+|..|+...++
T Consensus 311 v~lL~~~~~--------------------------------------------~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 311 VRTVLRAGD--------------------------------------------REDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp HHHHHHHTT--------------------------------------------CHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred HHHHHccCC--------------------------------------------cHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 444321000 024677888888888653331
Q ss_pred ch-hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHH-----------
Q 008533 385 EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRS----------- 451 (562)
Q Consensus 385 ~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~----------- 451 (562)
.+ ....++.+.+.+.+++. +.+|.+++.+++.++.+.... .... ..++|.++..+.+.++.+|.
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~--~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~ 423 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSH--WPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 423 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCC--HHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHHHccChHHHHHHhCccCc--hHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchh
Confidence 01 12467888888886531 799999999999999764322 1111 23566666666654444444
Q ss_pred -----------HHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH
Q 008533 452 -----------ISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL 518 (562)
Q Consensus 452 -----------~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l 518 (562)
.++.+++.++..-. ....+ ...++.++..+.+.++.++..|+.+|.++...- .....+
T Consensus 424 ~~~~~~~~v~~~a~~aL~~La~~~~-------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~i 494 (644)
T 2z6h_A 424 VEGVRMEEIVEGCTGALHILARDVH-------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--EAAEAI 494 (644)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTTSHH-------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--HHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhcCHH-------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--HHHHHH
Confidence 44455554443211 11122 356888999999999999999999999987431 111111
Q ss_pred --HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 519 --EIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 519 --~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
...++.|..++.+.+...+..+..+|+.++.
T Consensus 495 ~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 495 EAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1235567777777777777788888888765
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.71 E-value=8.6e-15 Score=150.43 Aligned_cols=361 Identities=16% Similarity=0.159 Sum_probs=244.9
Q ss_pred HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc-ccccCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHH
Q 008533 131 ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV-LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 131 ~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~ 208 (562)
..++.+++.+.++++..+..++..++.+...-... .. .-.-..++|.|++++.. .++.++..|+.++..++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~-------~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia 148 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-------NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 148 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHH-------HHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHH-------HHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 35778888999999999999999998876432210 00 01235689999999975 56899999999999998
Q ss_pred hhchhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCC-----hhHHHH
Q 008533 209 MLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD-----DDVALE 281 (562)
Q Consensus 209 ~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~-----~~v~~~ 281 (562)
...+......+. ..++.+..++.+++++++..++.+|..++...++.-...+. ..++.++..+...+ ..+...
T Consensus 149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 765432221111 35777888888899999999999999998765443111111 23455555554433 234556
Q ss_pred HhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccc
Q 008533 282 ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDI 361 (562)
Q Consensus 282 a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~ 361 (562)
+...+..++..+..... ......++|.++..+...+.
T Consensus 229 a~~~L~nl~~~~~~~~~-~~~~~~~lp~L~~LL~~~~~------------------------------------------ 265 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-LDAVEQILPTLVRLLHHNDP------------------------------------------ 265 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-HHHHHHHHHHHHHHTTSSCH------------------------------------------
T ss_pred HHHHHHHHHhcccchhh-HHHHhhHHHHHHHHhcCCcH------------------------------------------
Confidence 66777777765321111 12234566666655432111
Q ss_pred cchhcHhhhHHHHHHHHHhhhcc--c--hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHH
Q 008533 362 VNVWNLRKCSAAALDVLSNVFGD--E--ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVA 436 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~--~--~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~ 436 (562)
.++..+..+|..++....+ . +...+++.+.+++.+++ +.++..++.+++.++.+........+ ..+++
T Consensus 266 ----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~---~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 266 ----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp ----HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred ----HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCC---hhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 2566678888888764322 1 12357788889999888 99999999999999977643322222 23677
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccc
Q 008533 437 FLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAP 516 (562)
Q Consensus 437 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~ 516 (562)
.+...+.++++.+|..|+|+|++++..-... ...-.-..+++.++..+.+.+..+|..|+++|++++......-..
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHHHHHTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcccHHH----HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7888889999999999999999998643221 011112357888999999999999999999999999765322111
Q ss_pred cH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 517 RL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 517 ~l--~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
++ ..+++.|++++...+.+.+..++++|..+....+
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 21 2457778888888888888889999988876543
No 37
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.71 E-value=3.7e-15 Score=159.65 Aligned_cols=456 Identities=10% Similarity=0.020 Sum_probs=284.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc--cCChhhH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK--SMSPSNQ 91 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~--~l~~~~~ 91 (562)
+..++..+.+|+.+ +|+.+.+.+..... ..+.+..|..+|. +.++.+|..|+..|.+.....-. .+. ..
T Consensus 117 i~~lv~~L~~~~~~-~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~--~~ 190 (780)
T 2z6g_A 117 HPTNVQRLAEPSQM-LKHAVVNLINYQDDAELATRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIM--RS 190 (780)
T ss_dssp ---------CCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHT--TC
T ss_pred HHHHHHHhcCccHH-HHHHHHHHHHhhhHHHHHhCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHH--hc
Confidence 45566666688888 88888777764321 1356777888776 56889999999988886543100 000 01
Q ss_pred HHHHHHHhhhhhC-CchHHHHHHHHHHHHHHHhcCc-Cc--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 92 QYIKSELLPCLGA-ADRHIRSTVGTIVSVVVQLGGI-AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 92 ~~i~~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~-~~--w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
..+...|++.|.+ ++..+|..++.++..++..... .. -...++.|+++++++++.++..++.+|..++...+....
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 2345667777764 4899999999999998764311 00 124788999999999999999999999999986543211
Q ss_pred ccCCCCCcch-hHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCC-HHHHHHHHHH
Q 008533 168 SDVPGLAECP-INIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPS-AEVRKLVCAA 244 (562)
Q Consensus 168 ~~~~~~~~~~-~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~-~~~~~~~~~~ 244 (562)
.. -...++.++..+.+++..++..++.++..+....++.-.... ...++.+..++.+.+ +..+..++.+
T Consensus 271 --------~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~a 342 (780)
T 2z6g_A 271 --------AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342 (780)
T ss_dssp --------HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred --------HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01 146889999999999999999999999877753322111100 022445555555444 4455667777
Q ss_pred HHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhh
Q 008533 245 FNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (562)
Q Consensus 245 L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 323 (562)
|..++.. +......+. ..++.++..+.+.+.+++..++.++..++....... ....+++.++..+...
T Consensus 343 L~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~----~~~~~i~~Lv~lL~~~------ 411 (780)
T 2z6g_A 343 LKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQLLGSD------ 411 (780)
T ss_dssp HHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS----CCHHHHHHHHHHTTCS------
T ss_pred HHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh----hhhhHHHHHHHHHcCC------
Confidence 7777743 222211112 356778888888888899999999999887632111 1234566665544310
Q ss_pred hhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---ch-hhhhHHHHHHHHc
Q 008533 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI-LPTLMPVIQAKLS 399 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~-~~~l~~~l~~~l~ 399 (562)
.+.+|..|..+|..|+..-+. .+ -...++.+.+.+.
T Consensus 412 ----------------------------------------d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 412 ----------------------------------------DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred ----------------------------------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 135788888999888764321 11 1245666666666
Q ss_pred C-CCCCCc-hhHHHHHHHHHHHhhcchhh--hhhh--HHHHHHHHhhhcCCCC-hhHHHHHHHHHHHhHHHHhhhcCCCc
Q 008533 400 A-SGDEAW-KDREAAVLALGAIAEGCIKG--LYPH--LSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFIVQDIGHQN 472 (562)
Q Consensus 400 ~-~~~~~~-~~r~aal~~l~~i~~~~~~~--~~~~--l~~~~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ 472 (562)
+ .+ + .+|..|+.+|+.++....+. .... -...+|.+...|.+++ +.||..|+|+|++++..-..
T Consensus 452 ~~~~---~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~------ 522 (780)
T 2z6g_A 452 RAGD---REDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN------ 522 (780)
T ss_dssp HHTT---CHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH------
T ss_pred ccCC---HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH------
Confidence 4 33 4 89999999999998654321 1111 1235788888998766 49999999999999863221
Q ss_pred chhhH-HHHHHHHHHHhccCC----------------------HHHHHHHHHHHHHHHHHc--cccccccHHHHHHHHHH
Q 008533 473 GREQF-EKVLMGLLKRILDTN----------------------KRVQEAACSAFATLEEEA--AEELAPRLEIILQHLMM 527 (562)
Q Consensus 473 ~~~~~-~~il~~l~~~l~d~~----------------------~~vr~~a~~al~~l~~~~--~~~~~~~l~~il~~L~~ 527 (562)
..... ..+++.|+..|.+.+ ..++..++.+|++++... ...+. -...++.|+.
T Consensus 523 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~~~i~~Lv~ 600 (780)
T 2z6g_A 523 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR--GLNTIPLFVQ 600 (780)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHH--HTCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHH--HCCcHHHHHH
Confidence 11111 245666666665433 345566677777665211 11110 0234566677
Q ss_pred HHhhhhhhHHHHHHHHHHHHH
Q 008533 528 AFGKYQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 528 ~l~~~~~~~~~~~~~~l~~l~ 548 (562)
++.......++.+..+|+.++
T Consensus 601 lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 601 LLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp GGGCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHh
Confidence 777777777778888887765
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.71 E-value=5.2e-15 Score=151.14 Aligned_cols=365 Identities=16% Similarity=0.176 Sum_probs=244.7
Q ss_pred CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc-ccccCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHH
Q 008533 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV-LDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLG 202 (562)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~ 202 (562)
....|. ++.+++.++++++..+..|...++.+...-... .. .-.-..++|.|+++|++ .++.++..|.+
T Consensus 53 ~~~~~~--i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~-------~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~ 123 (510)
T 3ul1_B 53 GTVNWS--VEDIVKGINSNNLESQLQATQAARKLLSREKQPPID-------NIIRAGLIPKFVSFLGKTDCSPIQFESAW 123 (510)
T ss_dssp CCSSCC--HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHH-------HHHHTTHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred chhhhh--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHH-------HHHHCCCHHHHHHHHCCCCCHHHHHHHHH
Confidence 334553 678889999999999999999999887542210 00 01124579999999975 46899999999
Q ss_pred HHHHHHhhchhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCC-----
Q 008533 203 SVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTD----- 275 (562)
Q Consensus 203 ~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~----- 275 (562)
+|.+++...++.-...++ ..++.+..++.+++++++..++.+|..++...+..-..... ..++.++..+...+
T Consensus 124 aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~ 203 (510)
T 3ul1_B 124 ALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203 (510)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSC
T ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhh
Confidence 999998755433222222 35777888888899999999999999998765443111111 23444555544433
Q ss_pred hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC
Q 008533 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (562)
Q Consensus 276 ~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (562)
..+...+...+..++..+.....+ .....++|.++..+...+
T Consensus 204 ~~~~~~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~------------------------------------- 245 (510)
T 3ul1_B 204 CGYLRNLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHND------------------------------------- 245 (510)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSC-------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcccchhHH-HHHHhHHHHHHHHHhcCC-------------------------------------
Confidence 234556667777777653211111 223456666665543211
Q ss_pred CCCccccchhcHhhhHHHHHHHHHhhhcc--c--hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH
Q 008533 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD--E--ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL 431 (562)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~--~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l 431 (562)
..++..+..+|..|+..-.+ . .-..+++.+.+++.+++ +.++..++.+++.++.+........+
T Consensus 246 ---------~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 246 ---------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE---LPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp ---------HHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCC---hhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 13566788888888754322 1 12357788889999888 99999999999999877643322222
Q ss_pred -HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 432 -SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 432 -~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
..+++.+...+.++++.+|..|+|++++++..-... ...-.-..+++.++..+.+.+..+|..|+++|.+++...
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~----~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~ 389 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ----IQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHH----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHH----HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccC
Confidence 235677788888999999999999999998643221 011112367889999999999999999999999999865
Q ss_pred cccccccH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 511 AEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 511 ~~~~~~~l--~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
...-..++ ..+++.|++++...+.+.+..++++|..+....+
T Consensus 390 ~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 390 TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 32211111 3556777888888777888888899888876544
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.70 E-value=1.4e-14 Score=147.95 Aligned_cols=386 Identities=13% Similarity=0.094 Sum_probs=257.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhcc
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKS 85 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~--------~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~ 85 (562)
+.+++..+.|.|.+ .+.+|.+.+.++.. +| +.++.|..+|.+ +.++.++..|+-.|.|....
T Consensus 59 i~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~--~~~~~lq~~Aa~aL~nias~---- 131 (510)
T 3ul1_B 59 VEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASG---- 131 (510)
T ss_dssp HHHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHhcC----
Confidence 56677777799999 99999999998542 34 456778888875 67789999999999987543
Q ss_pred CChhhHHH-----HHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--Cc--hHHHHHHHHHHhccCCh-----hHHhHH
Q 008533 86 MSPSNQQY-----IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AG--WLELLQALVTCLDSNDI-----NHMEGA 151 (562)
Q Consensus 86 l~~~~~~~-----i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~--w~~ll~~l~~~l~~~~~-----~~~~~a 151 (562)
+++.+.. ..+.|+++|.+++..+|..++.+++.|+...+. .. -...++.|..++.+++. .....+
T Consensus 132 -~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 132 -TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 2333322 345678888999999999999999999964311 00 02346778888876543 345667
Q ss_pred HHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc-hHHHHHHHhhhc
Q 008533 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLLS 230 (562)
Q Consensus 152 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~~ 230 (562)
..++..++..-..... -.....++|.+.+++.+++.+++..|+.++..+....+...... -..+++.+..++
T Consensus 211 ~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHCCCSSCCC-------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhhcccchhH-------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh
Confidence 7888888765332111 02356789999999999999999999999999886543221111 113466677777
Q ss_pred cCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHH
Q 008533 231 NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPV 309 (562)
Q Consensus 231 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~ 309 (562)
.+.+..++..++.+|..++..........+. ..++.+...+.+.+++++..|...+..++.. .....
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~--~~~~~---------- 351 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG--RQDQI---------- 351 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS--CHHHH----------
T ss_pred cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC--cHHHH----------
Confidence 8888999999999999887654332211111 2333444445566666666666666665542 00000
Q ss_pred HHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhh
Q 008533 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPT 389 (562)
Q Consensus 310 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 389 (562)
..+ .-..
T Consensus 352 ------------------------------------------------------------------~~v-------~~~g 358 (510)
T 3ul1_B 352 ------------------------------------------------------------------QQV-------VNHG 358 (510)
T ss_dssp ------------------------------------------------------------------HHH-------HHTT
T ss_pred ------------------------------------------------------------------HHH-------HhcC
Confidence 000 0014
Q ss_pred hHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
++|.+...+.+.+ +.+|..|+++|+.++.+.......++ ..+++.+...|.++++.++..++++|.++.......
T Consensus 359 ~i~~Lv~lL~~~~---~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~ 435 (510)
T 3ul1_B 359 LVPFLVGVLSKAD---FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435 (510)
T ss_dssp HHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCC---HHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc
Confidence 5677777888888 99999999999999876543222222 236888899999999999999999999998765431
Q ss_pred cCCCcchhh---HH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 468 IGHQNGREQ---FE--KVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 468 ~~~~~~~~~---~~--~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+ ....+ ++ ..+..+.....+++..|+..|...|.+++.
T Consensus 436 -~--~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 436 -G--ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp -T--CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred -c--chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1 11122 11 123444444456789999999998887763
No 40
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.69 E-value=1.6e-13 Score=143.19 Aligned_cols=394 Identities=11% Similarity=0.049 Sum_probs=265.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
+.+...|+++-..+.+.... .++....+-+.+.+-|.++++.+|..+..+++.|.. ++-.+.+++.+.++++
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~-----~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDE-----RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLK 152 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHc
Confidence 56777787777765555332 355555667778888899999999999999999874 2345778999999999
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchh---hHHhc
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPS---ALFVS 218 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~---~~~~~ 218 (562)
++++.+|..|+.+++.+....++. +..+++.+...+.|.++.|+..|+.++..+....|+ .+...
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~~------------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~ 220 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPEL------------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKL 220 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGGG------------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHChHH------------HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 999999999999999999876642 346777888899999999999999999998875543 23333
Q ss_pred hHHHHHHHhhhc-----------cCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh---cCCCChhHHHHHhh
Q 008533 219 MDQYLQGLFLLS-----------NDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV---NKDTDDDVALEACE 284 (562)
Q Consensus 219 ~~~~l~~l~~~~-----------~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~---~~~~~~~v~~~a~~ 284 (562)
++.++..+.... +..++-.+..++++|..++...++.- +.+..++.-++.. .++....+...|..
T Consensus 221 v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~ 299 (618)
T 1w63_A 221 VPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-EAMNDILAQVATNTETSKNVGNAILYETVL 299 (618)
T ss_dssp HHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHHHTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 444444443321 12467788888899988876654432 2222233333322 22334567777777
Q ss_pred hHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccch
Q 008533 285 FWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNV 364 (562)
Q Consensus 285 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~ 364 (562)
++..+... .. + ....++.+...+... .
T Consensus 300 ~i~~l~~~---~~-l---~~~a~~~L~~~L~~~----------------------------------------------d 326 (618)
T 1w63_A 300 TIMDIKSE---SG-L---RVLAINILGRFLLNN----------------------------------------------D 326 (618)
T ss_dssp HHHHSCCC---HH-H---HHHHHHHHHHHHTCS----------------------------------------------S
T ss_pred HHHhcCCC---HH-H---HHHHHHHHHHHHhCC----------------------------------------------C
Confidence 77665332 11 1 112233333222110 0
Q ss_pred hcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC
Q 008533 365 WNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD 444 (562)
Q Consensus 365 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d 444 (562)
.++|..|..++..++...+. .+....+.+..++.+++ ..+|..|+.++..++.... +..+++.+...+.+
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~-~~~~~~~~i~~~l~d~d---~~Ir~~alelL~~l~~~~n------v~~iv~eL~~~l~~ 396 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHN-AVQRHRSTIVDCLKDLD---VSIKRRAMELSFALVNGNN------IRGMMKELLYFLDS 396 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHH-HHGGGHHHHHHGGGSSC---HHHHHHHHHHHHHHCCSSS------THHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhCHH-HHHHHHHHHHHHccCCC---hhHHHHHHHHHHHHccccc------HHHHHHHHHHHHHh
Confidence 14788899999999876554 33445567778888888 9999999999999987432 34456666666777
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHH
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQH 524 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~ 524 (562)
.++.+|..++.+||+++..++ +.....++.+++.+.+....++..++.++..++...++ .-..++..
T Consensus 397 ~d~e~r~~~v~~I~~la~k~~---------~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~----l~~~~v~~ 463 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAEKYA---------PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE----MHAYTVQR 463 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHSSC---------CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS----THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh----HHHHHHHH
Confidence 889999999999999998653 22345556666666665556777788888888876543 22345556
Q ss_pred HHHHHhhh--hhhHHHHHHHHHHHHHHHHh
Q 008533 525 LMMAFGKY--QRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 525 L~~~l~~~--~~~~~~~~~~~l~~l~~~~~ 552 (562)
|...+... .+...+.++.+||..+..+.
T Consensus 464 L~~~l~~~~~~~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 464 LYKAILGDYSQQPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp HHHHHHHCCSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccHHHHHHHHHHHhhhHHHhc
Confidence 66666652 23445578888888876653
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=1.9e-15 Score=138.50 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=164.0
Q ss_pred chhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHH
Q 008533 363 NVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (562)
Q Consensus 363 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l 438 (562)
..|..|..|...+..+....++ ..+..+++.+...+. +.+ ..+|.+|+.+++.++.+.+..+.+|++.++|.+
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~---~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN---VVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4699999999999999887432 234678889999995 888 999999999999999999888899999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-c-cccc
Q 008533 439 IPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA-E-ELAP 516 (562)
Q Consensus 439 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~-~-~~~~ 516 (562)
+..+.|+++.||.+|..++..++... .++.+++.+...+++.++.+|..++.+|+.++.... . .+.+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~-----------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST-----------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS-----------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 99999999999999999999987642 256888999999999999999999999999888763 3 5778
Q ss_pred cHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhccccC
Q 008533 517 RLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQVLLS 561 (562)
Q Consensus 517 ~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 561 (562)
+++.+++.|...+.+...+++..++++++.++..+|++.+.||+.
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999998888888899999999999999998899874
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.68 E-value=3.3e-14 Score=146.11 Aligned_cols=386 Identities=13% Similarity=0.101 Sum_probs=256.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CC--------ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 16 EICRLLEQQISPSSTADKSQIWQQLQQYSQ---FP--------DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 16 ~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~--------~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
.+.+++..+.|+|.+ .+.+|.+.+.++.. +| +.++.|..+|.. +.++.++..|+-.|.|.....
T Consensus 77 ~l~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~--~~~~~~q~~Aa~aL~nia~~~-- 151 (529)
T 3tpo_A 77 SVEDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK--TDCSPIQFESAWALTNIASGT-- 151 (529)
T ss_dssp CHHHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTC--TTCHHHHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHHcCC--
Confidence 356677788899998 99999999988532 33 456678888875 678999999999999876431
Q ss_pred cCChhhH-----HHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--Cch--HHHHHHHHHHhccCCh-----hHHhH
Q 008533 85 SMSPSNQ-----QYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSNDI-----NHMEG 150 (562)
Q Consensus 85 ~l~~~~~-----~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~w--~~ll~~l~~~l~~~~~-----~~~~~ 150 (562)
++.. ....+.|+.+|.+++..+|..++.+++.|+...+. ... ...++.|..++.+++. .....
T Consensus 152 ---~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~ 228 (529)
T 3tpo_A 152 ---SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 228 (529)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHH
T ss_pred ---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHH
Confidence 2222 23446677888899999999999999999964311 000 1235677777776542 34566
Q ss_pred HHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc-hHHHHHHHhhh
Q 008533 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS-MDQYLQGLFLL 229 (562)
Q Consensus 151 al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~-~~~~l~~l~~~ 229 (562)
+..++..++..-..... -.....++|.|..++.+++++++..|+.++..+....+...... -..+++.+..+
T Consensus 229 a~~~L~nl~~~~~~~~~-------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 229 LTWTLSNLCRNKNPAPP-------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHHCCCTTCCC-------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcccchhh-------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH
Confidence 77888888775433211 12457789999999999999999999999999887543221111 11346667777
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHH
Q 008533 230 SNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVP 308 (562)
Q Consensus 230 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~ 308 (562)
+.+++..++..++.+|..++..........+. ..++.+...+.+.+++++..|+..+..++... ....
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~--~~~~--------- 370 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR--QDQI--------- 370 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC--HHHH---------
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc--HHHH---------
Confidence 78888999999999999887654332211111 23344444555666666666666666555420 0000
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (562)
..+ .-.
T Consensus 371 -------------------------------------------------------------------~~v-------~~~ 376 (529)
T 3tpo_A 371 -------------------------------------------------------------------QQV-------VNH 376 (529)
T ss_dssp -------------------------------------------------------------------HHH-------HHT
T ss_pred -------------------------------------------------------------------HHH-------Hhc
Confidence 000 001
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH--HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~--~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
.++|.+...+.+++ +.+|..|+++|+.++.+.......++- .+++.+...|..+++.++..++++|.++......
T Consensus 377 g~i~~Lv~lL~~~~---~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~ 453 (529)
T 3tpo_A 377 GLVPFLVGVLSKAD---FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 453 (529)
T ss_dssp THHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHhcCCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh
Confidence 45677777788888 999999999999998765332222222 3688899999999999999999999999876542
Q ss_pred hcCCCcchhhHHHH------HHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 467 DIGHQNGREQFEKV------LMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 467 ~~~~~~~~~~~~~i------l~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
. + ..+.+... +..+.....+++..|+..|...|.+++.
T Consensus 454 ~-~---~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 454 L-G---ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp T-T---CHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred c-c---ChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 1 0 11112222 3344444456789999999999887764
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.5e-15 Score=138.53 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=166.3
Q ss_pred cchhcHhhhHHHHHHH-HHhhhcc-----chhhhhHHHHHHHH-cCCCCCCchhHHHHHHHHHHHhhcch-hhhh-hhHH
Q 008533 362 VNVWNLRKCSAAALDV-LSNVFGD-----EILPTLMPVIQAKL-SASGDEAWKDREAAVLALGAIAEGCI-KGLY-PHLS 432 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~-l~~~~~~-----~~~~~l~~~l~~~l-~~~~~~~~~~r~aal~~l~~i~~~~~-~~~~-~~l~ 432 (562)
+..|.-|..|...+.. +....++ .-+..++..+.+.+ ++.+ ..+|.+|+.+++.++++.+ ..+. +|..
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n---~~v~~~A~~al~~la~~l~~~~f~~~y~~ 103 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN---IQAVALAAQSVELICDKLKTPGFSKDYVS 103 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHHHHCTTTSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 4579999999888888 7654322 12346788888888 6777 9999999999999999998 8898 9999
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~- 511 (562)
.++|.++..+.|+.+.||.++..++..+++.+.+. ....|++.+++.++..+++.++.+|..++.+|++++...+
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~----~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL----ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT----CTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc----ccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999876321 1223589999999999999999999999999999999986
Q ss_pred --ccccccH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 512 --EELAPRL-EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 512 --~~~~~~l-~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
..+.+|+ +.+++.|...+.+.+..++..++++++.+...+|+..+.||+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l 231 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL 231 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4688999 999999999999988888889999999999999999889886
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.66 E-value=3.2e-12 Score=132.85 Aligned_cols=442 Identities=11% Similarity=0.071 Sum_probs=256.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCChHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHH
Q 008533 18 CRLLEQQISPSSTADKSQIWQQLQQYSQ-FPDFNNYLAFILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIK 95 (562)
Q Consensus 18 ~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~~~~~l~~il~~-~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~ 95 (562)
.+++..+.|+|-. .|+-+.-++..+.. +|+.....+..+.. -.+.++.+|-+|...+.+. ..++..+.+.
T Consensus 77 ~~vvkl~~s~~~~-~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i-------~~~e~~~~l~ 148 (621)
T 2vgl_A 77 MEAVNLLSSNRYT-EKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANV-------GSREMAEAFA 148 (621)
T ss_dssp HHHHHGGGCSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH-------CCHHHHHHHT
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcc-------CCHHHHHHHH
Confidence 4455555678888 88888888888654 56654333333322 2367888888888777765 2355666777
Q ss_pred HHHhhhh--hCCchHHHHHHHHHHHHHHHhcCcCchH--HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 96 SELLPCL--GAADRHIRSTVGTIVSVVVQLGGIAGWL--ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 96 ~~ll~~l--~~~~~~vr~~~~~~i~~i~~~~~~~~w~--~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
..+.+++ .+.++.||+.|+.++.++...++. ..+ ++++.+.+++.++++.++.+|+.++..++..-+..+.
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~---- 223 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK---- 223 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT----
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH----
Confidence 7888888 889999999999999999997632 222 5566777778899999999999999999887654332
Q ss_pred CCCcchhHhhHHHHHHhhcCC-------------CHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccC------
Q 008533 172 GLAECPINIFLPRLLQFFQSP-------------HTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND------ 232 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~-------------~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~------ 232 (562)
..++.++..+.+.+... ++-.+...++.+..+.....+.....+..++..+++...+
T Consensus 224 ----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 224 ----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 299 (621)
T ss_dssp ----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSS
T ss_pred ----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccc
Confidence 13444445444444321 5678888888887765422223333333444444432211
Q ss_pred ---CC--HHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHH
Q 008533 233 ---PS--AEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLV 307 (562)
Q Consensus 233 ---~~--~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~ 307 (562)
.+ ..+.-.+.+++..+ .+ ..++....+..+...+.+.++.+|..++..+..++........+.++...++
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l---~~--~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~ 374 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHH---DS--EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVI 374 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhc---CC--cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 11 13434444444433 22 2234455566666666777888999999888888765211233334433333
Q ss_pred HHHHhhcc-cChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccch
Q 008533 308 PVLLSNMI-YADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEI 386 (562)
Q Consensus 308 ~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~ 386 (562)
..+ . ..+ .++|..+.+.+..++ .+.-
T Consensus 375 ~~L----~~d~d----------------------------------------------~~Ir~~aL~lL~~l~---~~~N 401 (621)
T 2vgl_A 375 NAL----KTERD----------------------------------------------VSVRQRAVDLLYAMC---DRSN 401 (621)
T ss_dssp HHH----TTCCC----------------------------------------------HHHHHHHHHHHHHHC---CHHH
T ss_pred HHh----ccCCC----------------------------------------------HhHHHHHHHHHHHHc---Chhh
Confidence 322 1 000 134444444443333 2222
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH---------------------------------HH
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL---------------------------------SE 433 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l---------------------------------~~ 433 (562)
+..++..+..++.+.+ ...|..++.+++.++........-++ ..
T Consensus 402 v~~Iv~eL~~yl~~~d---~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~ 478 (621)
T 2vgl_A 402 AQQIVAEMLSYLETAD---YSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY 478 (621)
T ss_dssp HHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHH
Confidence 3445555555555444 55555555555555543211111111 11
Q ss_pred HHHHHhhhcCCCC--hhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 434 IVAFLIPLLDDKF--PLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 434 ~~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
.+..+...+.++. ..+...++|++|+++..+... + .. .-..++..+...+.+.++.||..+..++..+....+
T Consensus 479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~--~-~~--~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p 553 (621)
T 2vgl_A 479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD--P-RS--SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP 553 (621)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS--T-TS--CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc--C-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh
Confidence 2333445555543 356677789999999887631 0 00 012556667777777789999999999999877653
Q ss_pred ccccccHHHHHHHHHHH-Hh--hhhhhHHHHHHHHHHHH
Q 008533 512 EELAPRLEIILQHLMMA-FG--KYQRRNLRIVYDAIGTL 547 (562)
Q Consensus 512 ~~~~~~l~~il~~L~~~-l~--~~~~~~~~~~~~~l~~l 547 (562)
+ ..+.+..++.. .. +.+.+.+..+.+....+
T Consensus 554 ~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 554 E-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp G-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 2 22223333322 22 34445566777776655
No 45
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.65 E-value=1.3e-12 Score=144.92 Aligned_cols=470 Identities=13% Similarity=0.098 Sum_probs=292.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc------CCChHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHhhc-c
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQ------FPDFNNYLAFILARAE--GKSVEIRQAAGLLLKNNLRTAYK-S 85 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~------~~~~~~~l~~il~~~~--~~~~~~R~~a~~~lk~~i~~~w~-~ 85 (562)
+.+.+.+....+.... +|++....+..+.. =|+++..+...+.+.. ..++..+..+..+|+........ .
T Consensus 103 ~~ll~~l~~~~~~~~~-ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~ 181 (963)
T 2x19_B 103 AQLFTQITRFASGSKI-VLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR 181 (963)
T ss_dssp HHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhccc
Confidence 4466666553322345 89998888887543 2556666666554200 02555676777776665432100 0
Q ss_pred CC-----------hhhHHHHHHHHhhhhhCC--chHHHHHHHHHHHHHHHhcC-cCchHHHHHHHHHHhccCChhHHhHH
Q 008533 86 MS-----------PSNQQYIKSELLPCLGAA--DRHIRSTVGTIVSVVVQLGG-IAGWLELLQALVTCLDSNDINHMEGA 151 (562)
Q Consensus 86 l~-----------~~~~~~i~~~ll~~l~~~--~~~vr~~~~~~i~~i~~~~~-~~~w~~ll~~l~~~l~~~~~~~~~~a 151 (562)
.+ ......+.+.+.+.+.+. +..++..+..++...+.... ...++.+++.+.+.+. ++..+..+
T Consensus 182 ~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a 259 (963)
T 2x19_B 182 LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSS 259 (963)
T ss_dssp C---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHH
Confidence 10 122334444455555443 22477777777776665322 2356889999998884 56789999
Q ss_pred HHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHH-------hhcCCCHHHHHHHHHHHHHHHhhchhhHH------hc
Q 008533 152 MDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-------FFQSPHTSLRKLSLGSVNQFIMLMPSALF------VS 218 (562)
Q Consensus 152 l~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~-------~l~~~~~~vr~~al~~l~~~~~~~~~~~~------~~ 218 (562)
+.++..++........ ...+..+++.++. .+.+.+.+.....++.+..+....+..+. +.
T Consensus 260 ~~~l~~i~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 332 (963)
T 2x19_B 260 VEAIVNAISQPDAQRY-------VNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS 332 (963)
T ss_dssp HHHHHHHHTCTTGGGC-------HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHcccccccC-------HHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHH
Confidence 9999999875422100 1233444444433 23344556666677777777664443333 34
Q ss_pred hHHHHHHHhhhccC-----CCHHHHHHHHHHHHHHHhhC-----------ccchhhhHHHHHHHHHhhcCCCCh------
Q 008533 219 MDQYLQGLFLLSND-----PSAEVRKLVCAAFNLLIEVR-----------PSFLEPHLRNLFEYMLQVNKDTDD------ 276 (562)
Q Consensus 219 ~~~~l~~l~~~~~~-----~~~~~~~~~~~~L~~l~~~~-----------~~~~~~~l~~i~~~~~~~~~~~~~------ 276 (562)
+..+++.++....+ .++++...++..+..+++.. ...+.+++..+++.++..+..+++
T Consensus 333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~ 412 (963)
T 2x19_B 333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 55666766665543 35667777888887777621 234567777777777665432211
Q ss_pred ---------hHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCccccccc
Q 008533 277 ---------DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSR 347 (562)
Q Consensus 277 ---------~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 347 (562)
+.|..+.+++..++.. ... ..++.+++.+...+..
T Consensus 413 ~~de~~~~~~~r~~~~~~L~~~~~~--~~~---~~l~~~~~~l~~~l~~------------------------------- 456 (963)
T 2x19_B 413 SSDEKEQFRIYRVDISDTLMYVYEM--LGA---ELLSNLYDKLGRLLTS------------------------------- 456 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--HTH---HHHHHHHHHHHHHHHT-------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH--ccH---HHHHHHHHHHHHHHHh-------------------------------
Confidence 1244455555555432 111 1122222222111110
Q ss_pred CCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch
Q 008533 348 LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI 424 (562)
Q Consensus 348 ~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~ 424 (562)
.. ....|..+.++..+++.++..+.+ ..++.+++.+.+ +.+++ +.+|.+++.++|++++...
T Consensus 457 ------~~-----~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~---~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 457 ------SE-----EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISN---VQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp ------CC-----CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCS---HHHHHHHHHHHHHTHHHHH
T ss_pred ------cC-----CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 00 012488899999999999987754 344555554332 23344 8899999999999997654
Q ss_pred hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhcc--CCHHHHHHHHHH
Q 008533 425 KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILD--TNKRVQEAACSA 502 (562)
Q Consensus 425 ~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d--~~~~vr~~a~~a 502 (562)
+. .++++.+++.++..+.+ +.|+..|++++.++++.+.. ...+|++.+++.+...+.. -....+..+..+
T Consensus 522 ~~-~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~ea 593 (963)
T 2x19_B 522 DH-PVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQA 593 (963)
T ss_dssp HC-HHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33 36788899999999976 89999999999999987654 3578999999999988875 257889999999
Q ss_pred HHHHHHHcc-ccccccHHHHHHHHHHHHhhh-----hhh---HHHHHHHHHHHHHHHHhh
Q 008533 503 FATLEEEAA-EELAPRLEIILQHLMMAFGKY-----QRR---NLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 503 l~~l~~~~~-~~~~~~l~~il~~L~~~l~~~-----~~~---~~~~~~~~l~~l~~~~~~ 553 (562)
++.++...+ +...+|++.+++.+...+... +.. ....++++++.++++++.
T Consensus 594 i~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 594 LGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999998775 678889998888888777541 111 233789999999998874
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.64 E-value=9.8e-13 Score=138.69 Aligned_cols=426 Identities=13% Similarity=0.028 Sum_probs=274.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
+..|.+.|.. +++.+ +|..|...|..+.. ..+.+..|..++. +.++.+|..|+..|.+.....-.
T Consensus 58 i~~Lv~~L~~--~~~~~-~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 58 VSAIVRTMQN--TNDVE-TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHS--CCCHH-HHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhc--CCCHH-HHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHhCcch
Confidence 4444444442 23667 99999999988653 3456777888776 45799999999999998765311
Q ss_pred cCChhh-HHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--Cch--HHHHHHHHHHhccCC-hhHHhHHHHHHHHH
Q 008533 85 SMSPSN-QQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--AGW--LELLQALVTCLDSND-INHMEGAMDALSKI 158 (562)
Q Consensus 85 ~l~~~~-~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~~w--~~ll~~l~~~l~~~~-~~~~~~al~~l~~i 158 (562)
. .... .....+.|++.|.+++..++..++.++..++..... ... .+.++.|.+++++.+ ...+..++.+|..+
T Consensus 132 ~-~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nL 210 (644)
T 2z6h_A 132 A-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 210 (644)
T ss_dssp H-HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 0 0011 134456778888888888999899999999863211 001 235778888887654 56677888888888
Q ss_pred hhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHH
Q 008533 159 CEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVR 238 (562)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 238 (562)
+...... .. -.-...++.++..+.+.+..++..++.++..+....+.. .....+++.+..++.+.+++++
T Consensus 211 s~~~~~~--~~------l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~ 280 (644)
T 2z6h_A 211 SVCSSNK--PA------IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVV 280 (644)
T ss_dssp TTCTTHH--HH------HHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHH
T ss_pred hcCcccH--HH------HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHH
Confidence 7532211 00 011347889999999999999999999999998754331 2344678888888888899999
Q ss_pred HHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCC-C-ChhHHHHHhhhHHHhhccccchhhHHh--hhhHHHHHHHhh
Q 008533 239 KLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD-T-DDDVALEACEFWHSYFEAQLPHENLKE--FLPRLVPVLLSN 313 (562)
Q Consensus 239 ~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~-~-~~~v~~~a~~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~~ 313 (562)
..++.+|..++...++......+ ..++.++..+.+ . .++++..|+..+..++.........+. .-...++.++..
T Consensus 281 ~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 281 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH
Confidence 99999999998764432211111 245555555443 2 268999999999998764111111111 112345666555
Q ss_pred cccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--ch-hhhh
Q 008533 314 MIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EI-LPTL 390 (562)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~l 390 (562)
+.... .+.++..+..++..++..-.. .+ -..+
T Consensus 361 L~~~~---------------------------------------------~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~ 395 (644)
T 2z6h_A 361 LHPPS---------------------------------------------HWPLIKATVGLIRNLALCPANHAPLREQGA 395 (644)
T ss_dssp TSTTC---------------------------------------------CHHHHHHHHHHHHHHTTSGGGHHHHHHTTH
T ss_pred hCccC---------------------------------------------chHHHHHHHHHHHHHccCHHHHHHHHHcCC
Confidence 43110 135777888888887753211 11 1234
Q ss_pred HHHHHHHHcCCC-------------------CCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCCCChhH
Q 008533 391 MPVIQAKLSASG-------------------DEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFPLI 449 (562)
Q Consensus 391 ~~~l~~~l~~~~-------------------~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~v 449 (562)
++.+.+.+.+.+ ......+.+++.+|+.++.... ....+ ...++.+...+.+.++.|
T Consensus 396 i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~v 473 (644)
T 2z6h_A 396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--NRIVIRGLNTIPLFVQLLYSPIENI 473 (644)
T ss_dssp HHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTTCHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH--HHHHHHhCCcHHHHHHHHcCCCHHH
Confidence 555555554422 0013455667777777775431 11222 236888999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 450 RSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+..|++++++++.. ++ ....+ ...++.+...++++++.||..|+.+|.++....
T Consensus 474 ~~~a~~aL~~l~~~-~~------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 474 QRVAAGVLCELAQD-KE------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHHHHHTS-HH------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHcC-HH------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999998753 11 12222 234677888889999999999999999987654
No 47
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.63 E-value=2.4e-12 Score=142.64 Aligned_cols=380 Identities=10% Similarity=0.102 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHh--cCcCchHHHHHHHHHHhc----------------cCChhHHhHHHHHHHHHhhcchhccccc
Q 008533 108 HIRSTVGTIVSVVVQL--GGIAGWLELLQALVTCLD----------------SNDINHMEGAMDALSKICEDIPQVLDSD 169 (562)
Q Consensus 108 ~vr~~~~~~i~~i~~~--~~~~~w~~ll~~l~~~l~----------------~~~~~~~~~al~~l~~i~~~~~~~~~~~ 169 (562)
.++..+..++...+.. .+....+.+++.+.+ +. ++++..+..++.++..++...... +
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~---~ 279 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCH---N 279 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGG---G
T ss_pred hHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccc---c
Confidence 4566666666665552 222344567776666 41 134677888888888888753210 0
Q ss_pred CCCCCcchhHhhHHHHHH-------hhcCCCH---HHHHHHHHHHHHHHhhchhhHH-----------hchHHHHHHHhh
Q 008533 170 VPGLAECPINIFLPRLLQ-------FFQSPHT---SLRKLSLGSVNQFIMLMPSALF-----------VSMDQYLQGLFL 228 (562)
Q Consensus 170 ~~~~~~~~~~~il~~l~~-------~l~~~~~---~vr~~al~~l~~~~~~~~~~~~-----------~~~~~~l~~l~~ 228 (562)
. ...+..++|.++. ...+.+. +.....++.+..+....+..+. +.+..+++.++.
T Consensus 280 ~----~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~ 355 (971)
T 2x1g_F 280 Y----PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILH 355 (971)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred c----HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHH
Confidence 0 1234445555443 2244443 6777778888777754333322 345566777666
Q ss_pred hcc-----CCCHHHHHHHHHHHHHHHhhC------------ccchhhhHHHHHHHHHhhcCCC--------C-------h
Q 008533 229 LSN-----DPSAEVRKLVCAAFNLLIEVR------------PSFLEPHLRNLFEYMLQVNKDT--------D-------D 276 (562)
Q Consensus 229 ~~~-----~~~~~~~~~~~~~L~~l~~~~------------~~~~~~~l~~i~~~~~~~~~~~--------~-------~ 276 (562)
... ..++++...+++.+..+++.. ...+.+++..+++.++..+.-+ + .
T Consensus 356 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~ 435 (971)
T 2x1g_F 356 CTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFR 435 (971)
T ss_dssp HHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHH
T ss_pred HHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHH
Confidence 543 246788999999988877622 1334677777777777654211 1 1
Q ss_pred hHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCC
Q 008533 277 DVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPED 356 (562)
Q Consensus 277 ~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 356 (562)
..|..+.+++..++.. ... ..++.+++.+...+.. +.. +
T Consensus 436 ~~R~~~~~~l~~~~~~--~~~---~~l~~~~~~l~~~l~~-------~~~-------------------------~---- 474 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDV--LND---YILEILAAMLDEAIAD-------LQR-------------------------H---- 474 (971)
T ss_dssp HHHHHHHHHHHHHHTT--CTT---HHHHHHHHHHHHHHHH-------HHH-------------------------C----
T ss_pred HHHHHHHHHHHHHHHH--HhH---HHHHHHHHHHHHHHHh-------ccC-------------------------C----
Confidence 3566677777776654 221 2222333332222110 000 0
Q ss_pred CCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHc-CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH
Q 008533 357 DDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLS-ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS 432 (562)
Q Consensus 357 ~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~ 432 (562)
...|..+.++.-+++.++..+.. ..++.+++.+.+... +++ ..+|.+++.++|.+++-..+. ..+++
T Consensus 475 -----~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~---~~vr~~a~~~l~~~~~~l~~~-~~~l~ 545 (971)
T 2x1g_F 475 -----PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN---VKLLGTALETMGSYCNWLMEN-PAYIP 545 (971)
T ss_dssp -----TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHTHHHHC-----CHH
T ss_pred -----CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC---HHHHHHHHHHHHHHHHHHhcC-HHHHH
Confidence 02478899999999999887754 445666664433322 235 899999999999999765533 36889
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHc
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~ 510 (562)
.+++.++..+ | +.|+..|++++.++++.+... ..+|++.++..+...+..+ ....+..+..+++.++...
T Consensus 546 ~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~-----l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQ-----LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 9999999988 4 899999999999999887653 5799999999999999873 5788999999999999876
Q ss_pred c-ccccccHHHHHHHHHHHHhh----h--hh---hHHHHHHHHHHHHHHHHhh
Q 008533 511 A-EELAPRLEIILQHLMMAFGK----Y--QR---RNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 511 ~-~~~~~~l~~il~~L~~~l~~----~--~~---~~~~~~~~~l~~l~~~~~~ 553 (562)
+ +...+|+..+++.++..+.. . ++ ......++.|+.+...++.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~ 670 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNT 670 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCC
Confidence 4 56667777766666665543 2 11 1222466666666666653
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.62 E-value=6.2e-13 Score=137.23 Aligned_cols=420 Identities=12% Similarity=0.035 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC---------CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhh
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQYSQF---------PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAY 83 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~---------~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w 83 (562)
.+..|.+.|.. ++|.+ +|..|...|.++... .+.++.|..++. +.++.+|..|+..|.+.....=
T Consensus 60 ~i~~Lv~~L~~--~~~~~-~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~ 133 (529)
T 1jdh_A 60 MVSAIVRTMQN--TNDVE-TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHHH--CCCHH-HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHhc--CCCHH-HHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc---CCCHHHHHHHHHHHHHHhcCCc
Confidence 34445555542 34677 999999999987642 356677777776 4578999999999998765421
Q ss_pred ccCChh-hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc--C--chHHHHHHHHHHhccCC-hhHHhHHHHHHHH
Q 008533 84 KSMSPS-NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI--A--GWLELLQALVTCLDSND-INHMEGAMDALSK 157 (562)
Q Consensus 84 ~~l~~~-~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~--~--~w~~ll~~l~~~l~~~~-~~~~~~al~~l~~ 157 (562)
.. ... ......+.|++.+.+++..+|..++.++..++..... . .-.+.++.+.+.+++++ ...+..+..+|..
T Consensus 134 ~~-~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 212 (529)
T 1jdh_A 134 GA-KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212 (529)
T ss_dssp TH-HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ch-HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 10 000 1234456778888888999999999999988863211 0 01234677777777654 4556667778877
Q ss_pred HhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHH
Q 008533 158 ICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEV 237 (562)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (562)
++..... ... -.-...++.+...+.+++..++..++.++..+....+.. .....+++.+..++.+.++++
T Consensus 213 l~~~~~~--~~~------~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v 282 (529)
T 1jdh_A 213 LSVCSSN--KPA------IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINV 282 (529)
T ss_dssp HTTSTTH--HHH------HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHH
T ss_pred HhcCccc--HHH------HHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHH
Confidence 7753211 100 012357889999999999999999999999998764431 223466788888888889999
Q ss_pred HHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCC--CChhHHHHHhhhHHHhhccccchhhHHhh--hhHHHHHHHh
Q 008533 238 RKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKD--TDDDVALEACEFWHSYFEAQLPHENLKEF--LPRLVPVLLS 312 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~--l~~l~~~l~~ 312 (562)
+..++.+|..++...++......+ ..++.++..+.+ .+++++..|+..+..++......+..+.. -...++.++.
T Consensus 283 ~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~ 362 (529)
T 1jdh_A 283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362 (529)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHH
Confidence 999999999997754433222211 234555554433 33689999999999987641111111111 1123555555
Q ss_pred hcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc--chh-hh
Q 008533 313 NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD--EIL-PT 389 (562)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~ 389 (562)
.+.... .+.++..+..++..++..-.. .+. ..
T Consensus 363 lL~~~~---------------------------------------------~~~v~~~a~~~l~nl~~~~~~~~~~~~~~ 397 (529)
T 1jdh_A 363 LLHPPS---------------------------------------------HWPLIKATVGLIRNLALCPANHAPLREQG 397 (529)
T ss_dssp TTSTTC---------------------------------------------CHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred Hhcccc---------------------------------------------chHHHHHHHHHHHHHhcChhhhHHHHHcC
Confidence 443110 135777888888888753221 111 24
Q ss_pred hHHHHHHHHcCCCCCCchhHHHHHHHHHH----------------------HhhcchhhhhhhH--HHHHHHHhhhcCCC
Q 008533 390 LMPVIQAKLSASGDEAWKDREAAVLALGA----------------------IAEGCIKGLYPHL--SEIVAFLIPLLDDK 445 (562)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~----------------------i~~~~~~~~~~~l--~~~~~~l~~~l~d~ 445 (562)
++|.+.+.+.+.+ +.+|..|.++++. ++... +. ...+ ..+++.+...+.++
T Consensus 398 ~i~~L~~ll~~~~---~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~-~~-~~~l~~~~~v~~l~~ll~~~ 472 (529)
T 1jdh_A 398 AIPRLVQLLVRAH---QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HN-RIVIRGLNTIPLFVQLLYSP 472 (529)
T ss_dssp HHHHHHHHHHHHH---HHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH-HH-HHHHHHTTCHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHh---HHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc-hH-HHHHhccCCccHHHHHHcCC
Confidence 5677777777665 6666655554443 33211 10 1111 13568888999999
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
++.|+..|++++++++.. ++ ....+ ...++.+...+.++++.|+..|.++|.++
T Consensus 473 ~~~v~~~a~~~l~~l~~~-~~------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 473 IENIQRVAAGVLCELAQD-KE------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS-HH------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcC-HH------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999998743 11 11112 24567778888899999999999999876
No 49
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.59 E-value=1.5e-12 Score=135.40 Aligned_cols=353 Identities=11% Similarity=0.075 Sum_probs=241.1
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcc
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~ 176 (562)
.+++.+.+++...|+.+-..+..++... ++..--.++.+.+-++++++..|-.|+.+++.+.. + .
T Consensus 78 ~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~------------e 142 (621)
T 2vgl_A 78 EAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--R------------E 142 (621)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--H------------H
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--H------------H
Confidence 4556778888999988777777666432 11222245677788889999999999999998854 1 1
Q ss_pred hhHhhHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc
Q 008533 177 PINIFLPRLLQFF--QSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 177 ~~~~il~~l~~~l--~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
..+.+.|.+.+++ .+.++.||+.|+-|+..+....|+.+.. +.+++.+..++.+.++.++..++.++..++...+.
T Consensus 143 ~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 143 MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 4577889999999 8999999999999999999876654431 24466777777889999999999999999998887
Q ss_pred chhhhHHHHHHHHHhhcCC-------------CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChh--
Q 008533 255 FLEPHLRNLFEYMLQVNKD-------------TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADD-- 319 (562)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~-------------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~-- 319 (562)
.+.++++.++..+.+.... .++-.+...++++..++..+ . ......+..++..++..+.....
T Consensus 221 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~-d-~~~~~~l~~~L~~il~~~~~~~ks~ 298 (621)
T 2vgl_A 221 EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE-D-PAVRGRLTECLETILNKAQEPPKSK 298 (621)
T ss_dssp HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS-S-HHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC-C-HHHHHHHHHHHHHHHHhhccCcccc
Confidence 7777777766655543211 14557778888888877531 1 12222222333333322110000
Q ss_pred hHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHc
Q 008533 320 DESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLS 399 (562)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~ 399 (562)
... ......++-..+..++-.+. -.........+.+...+.
T Consensus 299 ~l~-------------------------------------~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~ 339 (621)
T 2vgl_A 299 KVQ-------------------------------------HSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQ 339 (621)
T ss_dssp SHH-------------------------------------HHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSS
T ss_pred ccc-------------------------------------ccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhc
Confidence 000 00001134344444444432 112455567777888888
Q ss_pred CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHH
Q 008533 400 ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFE 478 (562)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 478 (562)
+++ ...|+.|+.++..++...+. ...+....+.++.++. |+++.||..|+.++..++. ...++
T Consensus 340 ~~~---~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-----------~~Nv~ 403 (621)
T 2vgl_A 340 HRE---TNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD-----------RSNAQ 403 (621)
T ss_dssp CSC---HHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-----------HHHHH
T ss_pred CCC---cchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-----------hhhHH
Confidence 777 89999999999999876531 1234445566777788 9999999999999887764 45678
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHH
Q 008533 479 KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQ 523 (562)
Q Consensus 479 ~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~ 523 (562)
.++..+...+.+.+...|..++.+++.++....+....|++.+++
T Consensus 404 ~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ 448 (621)
T 2vgl_A 404 QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILN 448 (621)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 899999999988889999999999999987765555555554443
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.54 E-value=2.9e-11 Score=134.62 Aligned_cols=464 Identities=11% Similarity=0.098 Sum_probs=269.3
Q ss_pred CCCCHHHHHHHHHHHHHh-hc----CC-C----hHHHHHHHHhhccC-C-----CHHHHHHHHHHHHHHHHHhhccCChh
Q 008533 26 SPSSTADKSQIWQQLQQY-SQ----FP-D----FNNYLAFILARAEG-K-----SVEIRQAAGLLLKNNLRTAYKSMSPS 89 (562)
Q Consensus 26 s~d~~~~r~~A~~~L~~~-~~----~~-~----~~~~l~~il~~~~~-~-----~~~~R~~a~~~lk~~i~~~w~~l~~~ 89 (562)
+.+.. +|..|...|++. .. -| + .-..++..+.+... . +..+|...+..+-..++..|+.-=++
T Consensus 60 s~~~~-vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ 138 (1049)
T 3m1i_C 60 STNPQ-SKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE 138 (1049)
T ss_dssp CSCHH-HHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT
T ss_pred CCCHH-HHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH
Confidence 45666 999999999873 21 12 1 23455665554211 1 36788888877777777655422122
Q ss_pred hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc--C-----------------cCchHHHHHHHHHHhcc-CChhHHh
Q 008533 90 NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--G-----------------IAGWLELLQALVTCLDS-NDINHME 149 (562)
Q Consensus 90 ~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~--~-----------------~~~w~~ll~~l~~~l~~-~~~~~~~ 149 (562)
+.+.+++.+. .++..+..+..++..+.... . ....+.+++.+.+++++ +++..+.
T Consensus 139 ----ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~ 213 (1049)
T 3m1i_C 139 ----FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIV 213 (1049)
T ss_dssp ----HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ----HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 2233444443 33444544555555554321 0 11245566666666654 3567788
Q ss_pred HHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-------------------
Q 008533 150 GAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML------------------- 210 (562)
Q Consensus 150 ~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~------------------- 210 (562)
.++.++...+.-.+.... ....+++.+++.+. .++++|..|++|+..++..
T Consensus 214 ~aL~~l~~~l~wi~~~~~---------~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~ 283 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYI---------YETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQN 283 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHH---------HSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHH---------hhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Confidence 888888776654432110 00123333331111 1344444444444433321
Q ss_pred --------------------------------------------chh------hHHhchHHHHHHHhhhccCCCHHHHHH
Q 008533 211 --------------------------------------------MPS------ALFVSMDQYLQGLFLLSNDPSAEVRKL 240 (562)
Q Consensus 211 --------------------------------------------~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~ 240 (562)
... .+.+.+..+++.++.....++.++...
T Consensus 284 ~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~ 363 (1049)
T 3m1i_C 284 TLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKT 363 (1049)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 000 012223334555555555667888999
Q ss_pred HHHHHHHHHhh------CccchhhhHHHHHHHHHhhcCCCC-------------------h---hHHHHHhhhHHHhhcc
Q 008533 241 VCAAFNLLIEV------RPSFLEPHLRNLFEYMLQVNKDTD-------------------D---DVALEACEFWHSYFEA 292 (562)
Q Consensus 241 ~~~~L~~l~~~------~~~~~~~~l~~i~~~~~~~~~~~~-------------------~---~v~~~a~~~l~~~~~~ 292 (562)
+++.+..+++. ....+.+++..+++.++..+.-++ . ..+..+.+++..++..
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~ 443 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL 443 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc
Confidence 99999888772 345567888888888776542111 0 1233444555555432
Q ss_pred ccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHH
Q 008533 293 QLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSA 372 (562)
Q Consensus 293 ~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~ 372 (562)
... ..++.+.+.+-..+.. ....|..+.++.
T Consensus 444 --~~~---~~l~~v~~~l~~~l~~--------------------------------------------~~~~W~~~eaal 474 (1049)
T 3m1i_C 444 --NVI---DTEEIMISKLARQIDG--------------------------------------------SEWSWHNINTLS 474 (1049)
T ss_dssp --CHH---HHHHHHHHHHHHHHTS--------------------------------------------SSCCHHHHHHHH
T ss_pred --CHH---HHHHHHHHHHHHHhCC--------------------------------------------CCCCHHHHHHHH
Confidence 111 1112222222111110 012488899999
Q ss_pred HHHHHHHhhhcc----chhhhhHHHHHHHHcC-----CCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 008533 373 AALDVLSNVFGD----EILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (562)
Q Consensus 373 ~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~ 443 (562)
.+++.++...++ ..++.+++.+...... ++ ..+|..++.++|++++-.... ..+++.+++.++..+.
T Consensus 475 ~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~---~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~ 550 (1049)
T 3m1i_C 475 WAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK---AVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMH 550 (1049)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH---HHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhc
Confidence 999988876543 2356666666654321 23 555656888999887654432 4688999999999999
Q ss_pred CCChhHHHHHHHHHHHhHHHHhhhc---CCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc--ccccccH
Q 008533 444 DKFPLIRSISCWTLSRFSKFIVQDI---GHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA--EELAPRL 518 (562)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~--~~~~~~l 518 (562)
|+++.|+.+|++++.++++.++..+ .+....+|++.++..+...+.+....-......+++.++...+ +...+|+
T Consensus 551 ~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~ 630 (1049)
T 3m1i_C 551 ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLL 630 (1049)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999876431 1112248999999999988887666666788899999998775 3466777
Q ss_pred HHHHHHHHHHHh----hh--------hh---hHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 519 EIILQHLMMAFG----KY--------QR---RNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 519 ~~il~~L~~~l~----~~--------~~---~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
..+++.+...+. .. +. ..+..++++++.++.++|+.| .|+
T Consensus 631 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f-~p~ 685 (1049)
T 3m1i_C 631 SDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF-YPQ 685 (1049)
T ss_dssp HHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGG-HHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHH-HHH
Confidence 776665544333 21 11 122356788899999999776 354
No 51
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.47 E-value=6.4e-10 Score=121.33 Aligned_cols=461 Identities=11% Similarity=0.080 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHhhc------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--h--ccCChhhHHHHHHH----
Q 008533 32 DKSQIWQQLQQYSQ------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--Y--KSMSPSNQQYIKSE---- 97 (562)
Q Consensus 32 ~r~~A~~~L~~~~~------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~--w--~~l~~~~~~~i~~~---- 97 (562)
+|++....+..+.. =|+++..+...+.+ ++..+.....+|+.....- + ..+...-+..+++.
T Consensus 116 i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~----~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~ 191 (1023)
T 4hat_C 116 LINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS----SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE 191 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT----CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 55556666655332 24566555555542 4455666666666654432 2 22444434444332
Q ss_pred -------Hhhhhh-CCchHHHHHHHHHHHHHHHhcCcCch--HHHHHHHH-HHhccCChhHHhHHHHHHHHHhhc-c-hh
Q 008533 98 -------LLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGW--LELLQALV-TCLDSNDINHMEGAMDALSKICED-I-PQ 164 (562)
Q Consensus 98 -------ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~w--~~ll~~l~-~~l~~~~~~~~~~al~~l~~i~~~-~-~~ 164 (562)
+.+.+. ..++.+...+.++++.....-+.+.. +++++.+. ..+. ++..|..|+.||..++.. . ++
T Consensus 192 ~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~ 269 (1023)
T 4hat_C 192 FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQD 269 (1023)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCc
Confidence 223333 24566666777777776654221111 35778777 7664 467899999999999872 2 11
Q ss_pred --cccccCCCCCcchhHhhHHHHHHhh------------------cCCCHHHHHHHHHHHHHHHhhchhhH------Hhc
Q 008533 165 --VLDSDVPGLAECPINIFLPRLLQFF------------------QSPHTSLRKLSLGSVNQFIMLMPSAL------FVS 218 (562)
Q Consensus 165 --~~~~~~~~~~~~~~~~il~~l~~~l------------------~~~~~~vr~~al~~l~~~~~~~~~~~------~~~ 218 (562)
.+. ..+..+++.++..+ .+.+.+....-+..+..+.......+ .+.
T Consensus 270 ~~~~~--------~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 270 NDLIK--------RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp CHHHH--------HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred hHHHH--------HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Confidence 111 11222222222211 11234455555555555554322211 222
Q ss_pred hHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc------cchhhhHHHHHHHHHhhcCCCCh----------------
Q 008533 219 MDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP------SFLEPHLRNLFEYMLQVNKDTDD---------------- 276 (562)
Q Consensus 219 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~------~~~~~~l~~i~~~~~~~~~~~~~---------------- 276 (562)
+...+..++.....++.++...+++.+..+.+..+ ..+.+++..+++.++..+.-+++
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhc
Confidence 22234456666666788898899999888876432 34677888888888776443221
Q ss_pred ----hH-HHHHh-hhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCC
Q 008533 277 ----DV-ALEAC-EFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHG 350 (562)
Q Consensus 277 ----~v-~~~a~-~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 350 (562)
+. .-..+ +++..++.. .. +.+++.+++.+.. ..
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l--~~-------~~~~~~~~~~l~~------~l-------------------------- 460 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHL--NV-------IDTEEIMISKLAR------QI-------------------------- 460 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHH--CH-------HHHHHHHHHHHHH------HH--------------------------
T ss_pred cchHHHHHHHHHHHHHHHHhcc--CH-------HHHHHHHHHHHHH------Hh--------------------------
Confidence 00 00000 222222211 00 0111222111110 00
Q ss_pred CCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcC-----CCCCCchhHHHHHHHHHHHhh
Q 008533 351 SENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSA-----SGDEAWKDREAAVLALGAIAE 421 (562)
Q Consensus 351 ~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~-----~~~~~~~~r~aal~~l~~i~~ 421 (562)
+. ....|..+.++.-+++.++....+ ..++.+++.+.+.+.+ +. .++|.++++++|+.++
T Consensus 461 -~~-------~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k---~~v~~t~~~~lGry~~ 529 (1023)
T 4hat_C 461 -DG-------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK---AVVASDIMYVVGQYPR 529 (1023)
T ss_dssp -SS-------TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH---HHHHHHHHHHHHTCHH
T ss_pred -cC-------CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch---HHHHHHHHHHHHHHHH
Confidence 00 012499999999999999987643 5678888888887763 33 5677788899998887
Q ss_pred cchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhc---CCCcchhhHHHHHHHHHHHhccCCHHHHHH
Q 008533 422 GCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI---GHQNGREQFEKVLMGLLKRILDTNKRVQEA 498 (562)
Q Consensus 422 ~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~~~~il~~l~~~l~d~~~~vr~~ 498 (562)
-.... ..+++.++..++..+.+++|+|..+||+++.++++.+...+ .+....+|+++++..+...+.+-.+.-+..
T Consensus 530 wl~~~-~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 530 FLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHhcc-HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 65432 46799999999999999999999999999999999876532 112235799999999998887666777789
Q ss_pred HHHHHHHHHHHcccc--ccccHHHHHHHHHHHHhhhh---------------hhHHHHHHHHHHHHHHHHhhhhhcccc
Q 008533 499 ACSAFATLEEEAAEE--LAPRLEIILQHLMMAFGKYQ---------------RRNLRIVYDAIGTLADAVGFELNQVLL 560 (562)
Q Consensus 499 a~~al~~l~~~~~~~--~~~~l~~il~~L~~~l~~~~---------------~~~~~~~~~~l~~l~~~~~~~~~~~~~ 560 (562)
+..+++.++...+.. ...+++.++..+...++.-. .+.+-.++++++.++.++|..| .||.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f-~~~~ 686 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF-YPQL 686 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGG-HHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHH-HHHH
Confidence 999999999987532 23344444444333333210 1234478999999999999765 4653
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=6.3e-12 Score=114.98 Aligned_cols=196 Identities=10% Similarity=0.135 Sum_probs=163.4
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhc---CcCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
+.+++.+.+.++..|+.+...+..++... ......++++.|...+. +++..+|..|+.+++.++...+..+.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~---- 93 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS---- 93 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH----
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH----
Confidence 34666778899999999999999999862 23567899999999995 89999999999999999988876553
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 008533 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
.++..++|.++..+.+.+..||..|..++..++...+ +..+++.+...+++.++.+|..++..|..++..
T Consensus 94 ----~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 94 ----NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp ----HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999987543 456778888888888999999999999998877
Q ss_pred C-cc-chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHH
Q 008533 252 R-PS-FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRL 306 (562)
Q Consensus 252 ~-~~-~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l 306 (562)
. ++ .+.+|++.+++.+...+.|...++|..|.++++.++..- ..+.+.++++.+
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v-g~~~~~~~l~~L 219 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM-GDKAVTPLLADV 219 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH-CHHHHGGGGTTS
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc-CHHHHHHHHHhc
Confidence 6 34 567899999999999999999999999999999988751 122344555443
No 53
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.46 E-value=2e-11 Score=112.48 Aligned_cols=243 Identities=17% Similarity=0.123 Sum_probs=174.3
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 008533 181 FLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (562)
Q Consensus 181 il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 259 (562)
.+|.+++.++++++++|..|++++..+....++.....+. ..++.+...+.++++.++..++.+|..++...++.-...
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4788999999999999999999999998765532222221 457788888888889999999999999987644432222
Q ss_pred HH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCC
Q 008533 260 LR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQD 338 (562)
Q Consensus 260 l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (562)
.. ..++.++..+++.+++++..|+..+..++... .. .
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~--~~-~--------------------------------------- 120 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DE-A--------------------------------------- 120 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--HH-H---------------------------------------
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HH-H---------------------------------------
Confidence 22 46677777777788888888888888877430 00 0
Q ss_pred CCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHH
Q 008533 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGA 418 (562)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~ 418 (562)
+. .+.. ...++.+.+.+.+++ +..|..++.+|+.
T Consensus 121 -----------------------------~~-------~~~~-------~~~i~~L~~~l~~~~---~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 121 -----------------------------IK-------AIVD-------AGGVEVLVKLLTSTD---SEVQKEAARALAN 154 (252)
T ss_dssp -----------------------------HH-------HHHH-------TTHHHHHHHHTTCSC---HHHHHHHHHHHHH
T ss_pred -----------------------------HH-------HHHH-------CCCHHHHHHHHcCCC---HHHHHHHHHHHHH
Confidence 00 0000 134566667777777 9999999999999
Q ss_pred HhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhccCCHHHH
Q 008533 419 IAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTNKRVQ 496 (562)
Q Consensus 419 i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~~~~vr 496 (562)
++.+..+...... ..+++.+...+.++++.+|..|++++++++..-+.. .... -..+++.++..++++++.+|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA-----IKAIVDAGGVEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH-----HHHHHHTTHHHHHHHGGGCSCHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-----HHHHHHCCCHHHHHHHHCCCcHHHH
Confidence 9986543322222 347889999999999999999999999998642221 1111 13578889999999999999
Q ss_pred HHHHHHHHHHHHHccccccc
Q 008533 497 EAACSAFATLEEEAAEELAP 516 (562)
Q Consensus 497 ~~a~~al~~l~~~~~~~~~~ 516 (562)
..|+++|+++.........+
T Consensus 230 ~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 230 KEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp HHHHHHHHHHHHTCBCCC--
T ss_pred HHHHHHHHHHHcCCCccccc
Confidence 99999999999876544433
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.4e-12 Score=115.61 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=165.7
Q ss_pred HHhhhhhCCchHHHHHHHHHHHH-HHHhc---C--cCchHHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhcch-hcccc
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSV-VVQLG---G--IAGWLELLQALVTCL-DSNDINHMEGAMDALSKICEDIP-QVLDS 168 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~-i~~~~---~--~~~w~~ll~~l~~~l-~~~~~~~~~~al~~l~~i~~~~~-~~~~~ 168 (562)
.+.+.+.++++.-|+.+...++. ++... . ...+.+++..|.+.+ ++.+..++..|+.+++.+++.++ ..+..
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556788999999999999999 87542 2 356789999999999 68899999999999999998876 55430
Q ss_pred cCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH-hchHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 008533 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF-VSMDQYLQGLFLLSNDPSAEVRKLVCAAFNL 247 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~ 247 (562)
++...++|.++..+.+....|+.++..++..++..+++... .+++.+++.++..+++.++.+|..++.+|..
T Consensus 100 -------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 100 -------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp -------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 36788999999999999999999999999999987644222 2277889999998888899999999999999
Q ss_pred HHhhCc---cchhhhH-HHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhH
Q 008533 248 LIEVRP---SFLEPHL-RNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPR 305 (562)
Q Consensus 248 l~~~~~---~~~~~~l-~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~ 305 (562)
++...+ ..+.+|+ +.++|.+...+.|.+.++|..|.++++.++..- ..+.+.++++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v-G~~~~~p~l~~ 233 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF-GMNTFVKTLEH 233 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-CSGGGHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 998877 5578899 999999999999999999999999999988751 12335555554
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.43 E-value=3e-10 Score=114.94 Aligned_cols=366 Identities=13% Similarity=0.098 Sum_probs=225.2
Q ss_pred cCchH-HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 008533 126 IAGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (562)
Q Consensus 126 ~~~w~-~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (562)
+..|. .-++.++++++++++..+..|..+|..++......-.. -.-...+|.|+++|.+++..++..|+.+|
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~-------V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTD-------VRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH-------HHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHH-------HHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 34563 34788999999999999999999999998644332100 01234689999999999999999999999
Q ss_pred HHHHhhchhhHHhch--HHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhCcc---chhhhHHHHHHHHHh---h-----
Q 008533 205 NQFIMLMPSALFVSM--DQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPS---FLEPHLRNLFEYMLQ---V----- 270 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~--~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~~~---~~~~~l~~i~~~~~~---~----- 270 (562)
..+.....+.....+ ...++.+..++.. .+.+++..+..+|..+...... .....++.++..+.. .
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccc
Confidence 999863211111111 1235566666553 5678899999898888763211 112223333333211 0
Q ss_pred ------cCCCChhHHHHHhhhHHHhhcccc-chhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCccc
Q 008533 271 ------NKDTDDDVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRF 343 (562)
Q Consensus 271 ------~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 343 (562)
....+++++..|..+|..++.... ....+.. ...+++.|+..+...-.+
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~----------------------- 250 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQ----------------------- 250 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHT-----------------------
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcc-----------------------
Confidence 012357899999999999987521 1222221 123344444333210000
Q ss_pred ccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh--------------------------cc-ch--hhhhHHHH
Q 008533 344 HSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF--------------------------GD-EI--LPTLMPVI 394 (562)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~--------------------------~~-~~--~~~l~~~l 394 (562)
. . .+ + .....|..+|..|+... ++ +. -+.+++.+
T Consensus 251 --------~-~--~~-~-----~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~L 313 (584)
T 3l6x_A 251 --------K-D--SD-S-----KLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313 (584)
T ss_dssp --------T-C--CS-C-----HHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHH
T ss_pred --------c-C--cc-H-----HHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHH
Confidence 0 0 00 0 11222333333333221 11 11 13445666
Q ss_pred HHHHc-CCCCCCchhHHHHHHHHHHHhhcch---hhhhhhH--HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhc
Q 008533 395 QAKLS-ASGDEAWKDREAAVLALGAIAEGCI---KGLYPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (562)
Q Consensus 395 ~~~l~-~~~~~~~~~r~aal~~l~~i~~~~~---~~~~~~l--~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (562)
...+. +.+ +..++.|+.+|..++.+.. ..+...+ ...+|.+...|.++++.|+..|+|+|++++..-
T Consensus 314 l~LL~~s~~---~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~---- 386 (584)
T 3l6x_A 314 ISLLKESKT---PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA---- 386 (584)
T ss_dssp HHHHHHCCC---HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHccCCC---HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----
Confidence 77775 345 8999999999999987642 2222233 457999999999999999999999999999752
Q ss_pred CCCcchhhHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHcccccccc-HHHHHHHHHHHHhhh--hhhHH
Q 008533 469 GHQNGREQFEKVLMGLLKRILDT--------NKRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY--QRRNL 537 (562)
Q Consensus 469 ~~~~~~~~~~~il~~l~~~l~d~--------~~~vr~~a~~al~~l~~~~~~~~~~~-l~~il~~L~~~l~~~--~~~~~ 537 (562)
......-...++.|+..|.+. +..++..||.+|++++....+.-... -...++.|+.++... ..+..
T Consensus 387 --~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 387 --RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp --SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred --hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 123333467889999988765 35788899999999985432211111 135667777777764 56677
Q ss_pred HHHHHHHHHHH
Q 008533 538 RIVYDAIGTLA 548 (562)
Q Consensus 538 ~~~~~~l~~l~ 548 (562)
+.+..++..+.
T Consensus 465 k~Aa~vL~nl~ 475 (584)
T 3l6x_A 465 RAAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888888876
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.42 E-value=4.9e-11 Score=119.74 Aligned_cols=378 Identities=13% Similarity=0.108 Sum_probs=220.5
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
+|.++++++++++..+..|..+|..++..-+..-. . -.-...+|.|++++.++++.++..|+.++..+....+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~-~------i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQ-Q------VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHH-H------HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHH-H------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 57788889999999999999999999854332100 0 1224578999999999999999999999999987433
Q ss_pred hhHHhch--HHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhCccchhh-hHHHHHHHHHhhc--------CC-------
Q 008533 213 SALFVSM--DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEP-HLRNLFEYMLQVN--------KD------- 273 (562)
Q Consensus 213 ~~~~~~~--~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~-~l~~i~~~~~~~~--------~~------- 273 (562)
+. ...+ ...++.+..++. +++++++..++.+|..++.. ++ .+. .....++.++..+ .+
T Consensus 77 ~~-k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 77 TN-KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HH-HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred HH-HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHHhccccccccCccchhcc
Confidence 21 1111 123566666666 67889999999999999976 22 222 2224556555555 21
Q ss_pred -CChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccC------hhh-Hh-------hhhhhhccCCCCCCCC
Q 008533 274 -TDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYA------DDD-ES-------LVEAEEDESLPDRDQD 338 (562)
Q Consensus 274 -~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~------~~~-~~-------~~~~~~~~~~~~~~~~ 338 (562)
.+.++...|...+..++..+.....+.. ....++.++..+... ++. .+ +.....+...+.....
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~ 232 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred cccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhh
Confidence 2456777899999999875221122211 013455554444310 000 00 0000000000000000
Q ss_pred CCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh-------h----------ccc--hhhhhHHHHHHHHc
Q 008533 339 LKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV-------F----------GDE--ILPTLMPVIQAKLS 399 (562)
Q Consensus 339 i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~-------~----------~~~--~~~~l~~~l~~~l~ 399 (562)
+.+... .... ......++...... . +-+ .-+.+++.+...+.
T Consensus 233 ~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~ 293 (457)
T 1xm9_A 233 LEYNAR-------NAYT------------EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293 (457)
T ss_dssp HHHTC-----------------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH
T ss_pred cccccc-------cccc------------cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHh
Confidence 000000 0000 00000011111000 0 001 11345566666666
Q ss_pred CCCCCCchhHHHHHHHHHHHhhcchh---hh-hhhH--HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcc
Q 008533 400 ASGDEAWKDREAAVLALGAIAEGCIK---GL-YPHL--SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNG 473 (562)
Q Consensus 400 ~~~~~~~~~r~aal~~l~~i~~~~~~---~~-~~~l--~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 473 (562)
+.+. ...+++|+++|+.++.+..+ .+ ...+ ...+|.++..|.+.+..|+..|+|+|++++..-. ..
T Consensus 294 ~~~~--~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~------~~ 365 (457)
T 1xm9_A 294 KSKK--DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL------LH 365 (457)
T ss_dssp HCCC--HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG------GH
T ss_pred hcCC--HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH------HH
Confidence 4321 78999999999999976532 22 2223 2468999999999999999999999999987421 22
Q ss_pred hhhHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHcccccccc-HHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDTN------KRVQEAACSAFATLEEEAAEELAPR-LEIILQHLMMAFGKY-QRRNLRIVYDAIG 545 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~------~~vr~~a~~al~~l~~~~~~~~~~~-l~~il~~L~~~l~~~-~~~~~~~~~~~l~ 545 (562)
...-...++.|+..|...+ ..+...++.+|++++....+..... =...++.|..++... +++..+.+...|.
T Consensus 366 ~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~ 445 (457)
T 1xm9_A 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445 (457)
T ss_dssp HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3334578899999888753 3578889999999886543211111 136777888888877 6777888888876
Q ss_pred HHH
Q 008533 546 TLA 548 (562)
Q Consensus 546 ~l~ 548 (562)
.+.
T Consensus 446 ~~~ 448 (457)
T 1xm9_A 446 DMW 448 (457)
T ss_dssp TTS
T ss_pred HHH
Confidence 543
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.42 E-value=3.5e-11 Score=112.79 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=32.2
Q ss_pred hHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 390 LMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 390 l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.++.+.+.+.+++ +.+|..++.+|+.+.... +.+++.+...+.|+++.||..|+++++++.
T Consensus 160 ~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 160 TIPLLINLLKDPN---GDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CHHHHHHHHTCSS---HHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3344444555555 566666666665553211 123455555555666666666666665553
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.38 E-value=1.8e-10 Score=106.05 Aligned_cols=239 Identities=16% Similarity=0.108 Sum_probs=172.3
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc
Q 008533 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM 211 (562)
Q Consensus 132 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~ 211 (562)
-++.|.+.++++++..+..++.+|..++...+..... -.-...++.+++.+++++..++..|+.++..+....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-------IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 3678888999888999999999999998876532110 012357899999999999999999999999998754
Q ss_pred hhhHHhchH-HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHh
Q 008533 212 PSALFVSMD-QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSY 289 (562)
Q Consensus 212 ~~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~ 289 (562)
++.-..... ..++.+...+.++++.++..++.+|..++...++....... ..++.++..+.+.+++++..++..+..+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 332111111 35677777788888999999999999998655443222222 4567777777777888888888888777
Q ss_pred hccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhh
Q 008533 290 FEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRK 369 (562)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~ 369 (562)
+... ... +
T Consensus 156 ~~~~--~~~---------------------------------------------------------------------~- 163 (252)
T 4hxt_A 156 ASGP--DEA---------------------------------------------------------------------I- 163 (252)
T ss_dssp TTSC--HHH---------------------------------------------------------------------H-
T ss_pred HcCC--HHH---------------------------------------------------------------------H-
Confidence 6530 000 0
Q ss_pred hHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChh
Q 008533 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPL 448 (562)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 448 (562)
..+. -...++.+.+.+.+++ +..|..++.+|+.++.+..+...... ..+++.+...+.++++.
T Consensus 164 ------~~~~-------~~~~i~~L~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 164 ------KAIV-------DAGGVEVLVKLLTSTD---SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp ------HHHH-------HTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred ------HHHH-------HCcCHHHHHHHHCCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 0000 0134566777777777 89999999999999986544332222 34788999999999999
Q ss_pred HHHHHHHHHHHhHHHHh
Q 008533 449 IRSISCWTLSRFSKFIV 465 (562)
Q Consensus 449 vr~~a~~~l~~l~~~~~ 465 (562)
+|..|++++++++...+
T Consensus 228 v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 228 VQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999998643
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.33 E-value=1.1e-10 Score=107.61 Aligned_cols=233 Identities=13% Similarity=0.075 Sum_probs=169.5
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
...++.+...+++++++++..|++++..+....++.....+ ...++.+...+.++++.++..++.+|..++...++.-.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 44578899999999999999999999876664222211111 14577888888888899999999999999876554433
Q ss_pred hhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhh-hhHHHHHHHhhcccChhhHhhhhhhhccCCCCC
Q 008533 258 PHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESLVEAEEDESLPDR 335 (562)
Q Consensus 258 ~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 335 (562)
.... ..++.++..+++.+++++..|+..+..++..... ..... -...++.++..+...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~i~~L~~lL~~~------------------ 150 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSSP------------------ 150 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH--HHHHHHHTTHHHHHHHGGGCS------------------
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch--HHHHHHHCCCHHHHHHHHhCC------------------
Confidence 3332 3778888888888999999999999999876221 11111 123566666555311
Q ss_pred CCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---c-hhhhhHHHHHHHHcCCCCCCchhHHH
Q 008533 336 DQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E-ILPTLMPVIQAKLSASGDEAWKDREA 411 (562)
Q Consensus 336 ~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~-~~~~l~~~l~~~l~~~~~~~~~~r~a 411 (562)
.+.++..+..+|..++...++ . .-..+++.+.+.+.+++ ..+|..
T Consensus 151 ----------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~v~~~ 199 (252)
T 4db8_A 151 ----------------------------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN---EQILQE 199 (252)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSS---HHHHHH
T ss_pred ----------------------------CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCC---HHHHHH
Confidence 124788888999988864322 1 12467888889999887 999999
Q ss_pred HHHHHHHHhhcchhhhhhhHH-HHHHHHhhhcCCCChhHHHHHHHHHHHhHH
Q 008533 412 AVLALGAIAEGCIKGLYPHLS-EIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 412 al~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (562)
|+.+|+.++.+..+....... .+++.+...+.+.++.+|..|+++|++++.
T Consensus 200 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 200 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999766544333333 378999999999999999999999999864
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.32 E-value=3.5e-10 Score=113.53 Aligned_cols=379 Identities=13% Similarity=0.035 Sum_probs=219.1
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCch-----HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccC
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGW-----LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDV 170 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w-----~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~ 170 (562)
+.++..|.++++.++..++.++..++... +..+ ...+|.|+++++++++..+..|..+|..++..-+..-. .
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~-~- 81 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL-E- 81 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-H-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-H-
Confidence 45677888889999999999999998543 2223 34589999999999999999999999999875232110 0
Q ss_pred CCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhc--------cC--------C
Q 008533 171 PGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS--------ND--------P 233 (562)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--------~~--------~ 233 (562)
-.-...+|.|++++. +++.+++..|..++..+... ++.-...+...++.+..++ ++ .
T Consensus 82 -----i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 -----TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp -----HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred -----HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 012457899999999 78999999999999999875 3211111124455555554 21 2
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhhHH--HHHHHHHhhcC------CCChhHHHHHhhhHHHhhcc-----ccchhhHH
Q 008533 234 SAEVRKLVCAAFNLLIEVRPSFLEPHLR--NLFEYMLQVNK------DTDDDVALEACEFWHSYFEA-----QLPHENLK 300 (562)
Q Consensus 234 ~~~~~~~~~~~L~~l~~~~~~~~~~~l~--~i~~~~~~~~~------~~~~~v~~~a~~~l~~~~~~-----~~~~~~~~ 300 (562)
++++.+.++.+|..++.. ++......+ ..++.++..+. +.+..+...++..+..++.. +.....+.
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 466777999999998875 432211111 23333333322 23445666666666665421 00000000
Q ss_pred hhhhHHHH--HHHhhcccChhhH--hhhhhhh--ccC-CCCCCCC------CCcccccccCCCCCCCCCCCccccchhcH
Q 008533 301 EFLPRLVP--VLLSNMIYADDDE--SLVEAEE--DES-LPDRDQD------LKPRFHSSRLHGSENPEDDDDDIVNVWNL 367 (562)
Q Consensus 301 ~~l~~l~~--~l~~~l~~~~~~~--~~~~~~~--~~~-~~~~~~~------i~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 367 (562)
+....... ....++....... ..++ .+ ++. .++..+. ++++..... . .....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~----~---------~~~~~~ 300 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYD-CPLPEEETNPKGSGWLYHSDAIRTYLNLMG----K---------SKKDAT 300 (457)
T ss_dssp HTC-----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHH----H---------CCCHHH
T ss_pred cccccccccccccchhhccchhhhhcccc-CCccccccCchHHHHHhCcchHHHHHHHHh----h---------cCCHHH
Confidence 00000000 0000000000000 0000 00 000 0000000 000000000 0 001136
Q ss_pred hhhHHHHHHHHHhhhcc---c----hh--hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHH
Q 008533 368 RKCSAAALDVLSNVFGD---E----IL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~---~----~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l 438 (562)
+..|..+|..++..-+. . ++ ...+|.+.+.+.+++ ..++..|+++|+.++.... .....-...+|.+
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~---~~v~~~A~~aL~nls~~~~-~~~~i~~~~i~~L 376 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN---SDVVRSGASLLSNMSRHPL-LHRVMGNQVFPEV 376 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC---HHHHHHHHHHHHHHHTSGG-GHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC---HhHHHHHHHHHHHHhcCHH-HHHHHHHhhhHHH
Confidence 67778888888753221 1 12 356789999999988 9999999999999987542 1112224578888
Q ss_pred hhhcCCCC------hhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Q 008533 439 IPLLDDKF------PLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDT-NKRVQEAACSAFATLEE 508 (562)
Q Consensus 439 ~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~-~~~vr~~a~~al~~l~~ 508 (562)
+..|...+ +.+..+++++++++...-++ ....+ ...++.+...+.+. +..++..|++.|.+++.
T Consensus 377 v~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 88888654 36888999999998754221 12222 37788888888888 89999999999987763
No 61
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.30 E-value=8e-11 Score=108.48 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=170.4
Q ss_pred ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc-
Q 008533 48 DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI- 126 (562)
Q Consensus 48 ~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~- 126 (562)
..+..+...|. +.++.+|..|+..|++.+...-.....-......+.|++.|.++++.+|..++.+++.++.....
T Consensus 12 ~~~~~~~~~L~---s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 12 SELPQMTQQLN---SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp CSHHHHHHHHH---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred chHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 44566777776 45777888888888877765211111111223456788888888899999999999999974311
Q ss_pred -Cc--hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHH
Q 008533 127 -AG--WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (562)
Q Consensus 127 -~~--w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~ 203 (562)
.. -...++.|.+.++++++.++..++.+|+.++......... -.-...+|.+++.+.++++.++..|+.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~-------~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA-------VIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH-------HHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHH-------HHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 1247899999999999999999999999998875543110 1224588999999999999999999999
Q ss_pred HHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHH
Q 008533 204 VNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALE 281 (562)
Q Consensus 204 l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~ 281 (562)
+..+....+....... ...++.+...+.++++.++..++.+|..++...++....... ..++.+...+.+.+++++..
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHH
Confidence 9999875443222111 235677777888889999999999999998665554333333 47788888888889999999
Q ss_pred HhhhHHHhhc
Q 008533 282 ACEFWHSYFE 291 (562)
Q Consensus 282 a~~~l~~~~~ 291 (562)
|...+..+++
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999888764
No 62
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.28 E-value=3.5e-09 Score=107.13 Aligned_cols=352 Identities=14% Similarity=0.045 Sum_probs=222.2
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCc--h--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcc-hhcccccC
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAG--W--LELLQALVTCLDSNDINHMEGAMDALSKICEDI-PQVLDSDV 170 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~--w--~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~-~~~~~~~~ 170 (562)
+.+++.|.++++.++..++.++..++....... . ...+|.|+++++++++.+++.|..+|..++..- ... ...
T Consensus 51 ~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n-k~~- 128 (584)
T 3l6x_A 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN-KIA- 128 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH-HHH-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH-HHH-
Confidence 356778888899999999999999986432111 1 235799999999999999999999999998741 211 100
Q ss_pred CCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchh---hHHhchHHHHHHHhh---h-----------ccC
Q 008533 171 PGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPS---ALFVSMDQYLQGLFL---L-----------SND 232 (562)
Q Consensus 171 ~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~---~~~~~~~~~l~~l~~---~-----------~~~ 232 (562)
-.-...+|.|+.+|.+ .+.+++..|..++..+...-.. ....-++.+++.+.. . ...
T Consensus 129 -----I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 129 -----IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp -----HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred -----HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 0124578999999987 5788999999999988763211 111223333433311 0 012
Q ss_pred CCHHHHHHHHHHHHHHHhhCcc---chhh---hHHHHHHHHHhhc--CCCChhHHHHHhhhHHHhhcc-----ccchhhH
Q 008533 233 PSAEVRKLVCAAFNLLIEVRPS---FLEP---HLRNLFEYMLQVN--KDTDDDVALEACEFWHSYFEA-----QLPHENL 299 (562)
Q Consensus 233 ~~~~~~~~~~~~L~~l~~~~~~---~~~~---~l~~i~~~~~~~~--~~~~~~v~~~a~~~l~~~~~~-----~~~~~~~ 299 (562)
.+++++..+..+|..++...++ .+.. .++.++.++-... .+.+......|+..+..++.. +...+..
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3578999999999998765432 1211 1233444443321 234556777787777766543 0000000
Q ss_pred Hh-------------------hhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCcc
Q 008533 300 KE-------------------FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDD 360 (562)
Q Consensus 300 ~~-------------------~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d 360 (562)
.. +-...++.++..+..+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s------------------------------------------- 320 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES------------------------------------------- 320 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHC-------------------------------------------
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccC-------------------------------------------
Confidence 00 0001112221111100
Q ss_pred ccchhcHhhhHHHHHHHHHhhhcc------chh--hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH
Q 008533 361 IVNVWNLRKCSAAALDVLSNVFGD------EIL--PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS 432 (562)
Q Consensus 361 ~~~~~~~r~~a~~~l~~l~~~~~~------~~~--~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~ 432 (562)
....++..|..+|..|+..-+. ..+ ...+|.+..++.+++ ..++..|+.+|+.++.+.... ...-.
T Consensus 321 --~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~---~~v~~~A~~aL~nLs~~~~~~-~~I~~ 394 (584)
T 3l6x_A 321 --KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH---ERVVKAASGALRNLAVDARNK-ELIGK 394 (584)
T ss_dssp --CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC---HHHHHHHHHHHHHHHTTCSCH-HHHHH
T ss_pred --CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChhHH-HHHHh
Confidence 0124677888999888753211 112 355889999999888 899999999999999865311 12234
Q ss_pred HHHHHHhhhcCCC--------ChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhccC--CHHHHHHHHH
Q 008533 433 EIVAFLIPLLDDK--------FPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILDT--NKRVQEAACS 501 (562)
Q Consensus 433 ~~~~~l~~~l~d~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~--~~~vr~~a~~ 501 (562)
..+|.++..|.+. +..++..||+++++++..-+.. .... -...++.|+..+.+. ++.++..|++
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-----~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-----AKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-----HHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 6789999988764 3578999999999998542221 1111 246788899888875 7899999999
Q ss_pred HHHHHHH
Q 008533 502 AFATLEE 508 (562)
Q Consensus 502 al~~l~~ 508 (562)
+|.+++.
T Consensus 470 vL~nl~~ 476 (584)
T 3l6x_A 470 VLQTIWG 476 (584)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999973
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.28 E-value=6.8e-10 Score=103.99 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=176.4
Q ss_pred HHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc
Q 008533 96 SELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE 175 (562)
Q Consensus 96 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~ 175 (562)
+.|++.|.++++.+|..++.+++.+.. ++.++.|.+.+.++++.+|..++.+|+.+....
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~------------- 85 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK------------- 85 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-------------
Confidence 467778889999999999999998752 678888999999999999999999998764211
Q ss_pred chhHhhHHHHH-HhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCcc
Q 008533 176 CPINIFLPRLL-QFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 176 ~~~~~il~~l~-~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
..+..+++.+. ..++++++.||..++.+++.+....+. ..+.+++.+...+.++++.+|..++.+|..+...
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~--- 158 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--- 158 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---
Confidence 12345666665 356889999999999999988754321 1234567777778889999999999999875431
Q ss_pred chhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCC
Q 008533 255 FLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPD 334 (562)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 334 (562)
..++.+...+.+.++.+|..+...++.+... . +..++.+...+..
T Consensus 159 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~--------~~~~~~L~~~l~d------------------ 203 (280)
T 1oyz_A 159 -------ATIPLLINLLKDPNGDVRNWAAFAININKYD--N--------SDIRDCFVEMLQD------------------ 203 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--C--------HHHHHHHHHHTTC------------------
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--c--------HHHHHHHHHHhcC------------------
Confidence 2445555667888999999999988877432 1 1233333333210
Q ss_pred CCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHH
Q 008533 335 RDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVL 414 (562)
Q Consensus 335 ~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~ 414 (562)
..+.+|..+..+|..++ . +..++.+...++++ .+|..++.
T Consensus 204 ----------------------------~~~~vR~~A~~aL~~~~---~----~~~~~~L~~~l~d~-----~vr~~a~~ 243 (280)
T 1oyz_A 204 ----------------------------KNEEVRIEAIIGLSYRK---D----KRVLSVLCDELKKN-----TVYDDIIE 243 (280)
T ss_dssp ----------------------------SCHHHHHHHHHHHHHTT---C----GGGHHHHHHHHTSS-----SCCHHHHH
T ss_pred ----------------------------CCHHHHHHHHHHHHHhC---C----HhhHHHHHHHhcCc-----cHHHHHHH
Confidence 01357888888887764 2 34566666677653 37888899
Q ss_pred HHHHHhhcchhhhhhhHHHHHHHHhhhcCC-CChhHHHHHHHHHHH
Q 008533 415 ALGAIAEGCIKGLYPHLSEIVAFLIPLLDD-KFPLIRSISCWTLSR 459 (562)
Q Consensus 415 ~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~vr~~a~~~l~~ 459 (562)
+|+.+... .++|.+...+.+ +++.++..++.++.+
T Consensus 244 aL~~i~~~----------~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 244 AAGELGDK----------TLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHCCG----------GGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhcCch----------hhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 99988641 346667777754 567788877776654
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.26 E-value=7.4e-08 Score=99.14 Aligned_cols=397 Identities=11% Similarity=0.103 Sum_probs=252.3
Q ss_pred CChhhHHHHHHHHhhhhhC--CchHHHHHHHHHHHHHHHhcC--cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhc
Q 008533 86 MSPSNQQYIKSELLPCLGA--ADRHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICED 161 (562)
Q Consensus 86 l~~~~~~~i~~~ll~~l~~--~~~~vr~~~~~~i~~i~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~ 161 (562)
++...|+.|.+..++.|.+ .+..+|..++.++.++..... .....++.+.+.+++.+++...++-|++.|.++...
T Consensus 285 i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4455666666666665543 346889999999999987652 345678999999999987766799999999999765
Q ss_pred chh--cccccCCCCCcchhHhhHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhchhh------------------------
Q 008533 162 IPQ--VLDSDVPGLAECPINIFLPRLLQFFQS-PHTSLRKLSLGSVNQFIMLMPSA------------------------ 214 (562)
Q Consensus 162 ~~~--~~~~~~~~~~~~~~~~il~~l~~~l~~-~~~~vr~~al~~l~~~~~~~~~~------------------------ 214 (562)
..- .+.. -..+++.+++.+++ .+..+...++.++.++..+.+..
T Consensus 365 ~~VKe~L~~---------d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~ 435 (778)
T 3opb_A 365 ASVKIMIRS---------NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKV 435 (778)
T ss_dssp SHHHHHHHH---------CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------C
T ss_pred HHHHHHHHh---------CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcc
Confidence 432 2221 25567888888885 66678888888888888754310
Q ss_pred ---HH------h-ch-----HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCCh--
Q 008533 215 ---LF------V-SM-----DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDD-- 276 (562)
Q Consensus 215 ---~~------~-~~-----~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~-- 276 (562)
.. . .. ..+++.+...++..++.+|..+.++|..++.. .+.-....+ ..++.++..+.+..+
T Consensus 436 d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~ 514 (778)
T 3opb_A 436 GAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIG 514 (778)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---C
T ss_pred cccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcc
Confidence 00 0 00 02356666677778899999999999999865 222112222 345555555444332
Q ss_pred -hHHHHHhhhHHHhhccccchhhHHhh-hhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCC
Q 008533 277 -DVALEACEFWHSYFEAQLPHENLKEF-LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENP 354 (562)
Q Consensus 277 -~v~~~a~~~l~~~~~~~~~~~~~~~~-l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 354 (562)
..+..|...+..+.........+..+ ....++.++..+....+. . . .+ .
T Consensus 515 ~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~-~------------~-~~---------------l 565 (778)
T 3opb_A 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPV-D------------D-NP---------------L 565 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSC-S------------S-CC----------------
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCc-c------------c-cc---------------c
Confidence 37888988888876431111111110 114566666655421100 0 0 00 0
Q ss_pred CCCCccccchhcHhhhHHHHHHHHHhhhc-------cchhh--hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh
Q 008533 355 EDDDDDIVNVWNLRKCSAAALDVLSNVFG-------DEILP--TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK 425 (562)
Q Consensus 355 ~~~~~d~~~~~~~r~~a~~~l~~l~~~~~-------~~~~~--~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~ 425 (562)
.+++. . .--.+..|..+|..|+..-+ ..++. ..++.+.+++.+++ ..+|.+|+.+++.++....
T Consensus 566 ~~~~~--~-~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n---~~VrrAA~elI~NL~~~~e- 638 (778)
T 3opb_A 566 HNDEQ--I-KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN---VPLQRSTLELISNMMSHPL- 638 (778)
T ss_dssp --CCC--C-CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSS---HHHHHHHHHHHHHHHTSGG-
T ss_pred ccccc--c-cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCC---HHHHHHHHHHHHHHhCCcH-
Confidence 00000 0 00124457788888887641 13444 47899999998887 8999999999999997442
Q ss_pred hh-hhhH----H---HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhcc--CCH
Q 008533 426 GL-YPHL----S---EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILD--TNK 493 (562)
Q Consensus 426 ~~-~~~l----~---~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d--~~~ 493 (562)
.+ ..+. + +-++.++..++..+..+|.+|+++++++....+.. ....+ ...++.++..+.+ ++.
T Consensus 639 ~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----a~~ll~~~~gi~~Ll~lL~~~~~~~ 713 (778)
T 3opb_A 639 TIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----AKELLTKKELIENAIQVFADQIDDI 713 (778)
T ss_dssp GTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----HHHHTTCHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----HHHHHHccccHHHHHHHHhccCCCH
Confidence 21 1221 1 13778888898899999999999999997543321 11111 3566777777777 789
Q ss_pred HHHHHHHHHHHHHHHHc-----cccccccH--HHHHHHHHHHHhhhh
Q 008533 494 RVQEAACSAFATLEEEA-----AEELAPRL--EIILQHLMMAFGKYQ 533 (562)
Q Consensus 494 ~vr~~a~~al~~l~~~~-----~~~~~~~l--~~il~~L~~~l~~~~ 533 (562)
.+|.+++.++.++++.. ++.+..+. +.+.+.|.+.+...+
T Consensus 714 ~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 714 ELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 99999999999999733 23444444 567777788777653
No 65
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.25 E-value=2.8e-09 Score=105.33 Aligned_cols=312 Identities=14% Similarity=0.059 Sum_probs=189.4
Q ss_pred hhHHhHHHHHHHHHhhcchhcccccCC-CCC--cchhHhhHHHHHHhhcCCC--HH-----HHH-------HHHHHHHHH
Q 008533 145 INHMEGAMDALSKICEDIPQVLDSDVP-GLA--ECPINIFLPRLLQFFQSPH--TS-----LRK-------LSLGSVNQF 207 (562)
Q Consensus 145 ~~~~~~al~~l~~i~~~~~~~~~~~~~-~~~--~~~~~~il~~l~~~l~~~~--~~-----vr~-------~al~~l~~~ 207 (562)
+..+..|.++|..|+..-++....... +++ -+.+....+.+++.+.+.. .+ ++. .|++++.++
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nl 175 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL 175 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHh
Confidence 566777777777777665543221000 000 0011222344555555431 11 554 889999888
Q ss_pred HhhchhhHHhchH--HHHHHHhhhcc-----------CCCHHHHHHHHHHHHHHHhhCccchhhh---HHHHHHHHHhhc
Q 008533 208 IMLMPSALFVSMD--QYLQGLFLLSN-----------DPSAEVRKLVCAAFNLLIEVRPSFLEPH---LRNLFEYMLQVN 271 (562)
Q Consensus 208 ~~~~~~~~~~~~~--~~l~~l~~~~~-----------~~~~~~~~~~~~~L~~l~~~~~~~~~~~---l~~i~~~~~~~~ 271 (562)
... ++ ..+.+. ..++.+..++. ..++.++..+..+|..++...... +.. ....+|.++..+
T Consensus 176 s~~-~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 176 SFD-EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-KATLCSMKGCMRALVAQL 252 (458)
T ss_dssp TTS-HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHCHHHHHHHHHGG
T ss_pred cCC-HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-HHHHHHcCCcHHHHHHHH
Confidence 543 22 222111 22333333331 123678899999999998765422 122 235688888888
Q ss_pred CCCChhHHHHHhhhHHHhhcccc--chhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCC
Q 008533 272 KDTDDDVALEACEFWHSYFEAQL--PHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLH 349 (562)
Q Consensus 272 ~~~~~~v~~~a~~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 349 (562)
.+.+++++..|...+..++.... ....+.. ...++.++..+..+.
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~~LV~lLl~s~------------------------------- 299 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVK------------------------------- 299 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHHHHHHHHTTCC-------------------------------
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHHHHHHHHhcCC-------------------------------
Confidence 88899999999999999876311 1111111 134555555432110
Q ss_pred CCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---ch--hhhhHHHHHHHHcCCCCC-CchhHHHHHHHHHHHhh--
Q 008533 350 GSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EI--LPTLMPVIQAKLSASGDE-AWKDREAAVLALGAIAE-- 421 (562)
Q Consensus 350 ~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~--~~~l~~~l~~~l~~~~~~-~~~~r~aal~~l~~i~~-- 421 (562)
...++..+..++..|+....+ .+ ....+|.+.+.+.+.+.. +...++.|+.+|..++.
T Consensus 300 --------------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 300 --------------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 013566677888888873311 23 246788888888865421 12578888999998886
Q ss_pred -cchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHH
Q 008533 422 -GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQE 497 (562)
Q Consensus 422 -~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~ 497 (562)
+..+...... ...+|.++..|.+.+..++..|+|+|++++..-++ ....+ ...++.|+..|.+.++.++.
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~------~~~~i~~~G~I~~Lv~LL~s~~~~v~~ 439 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK------DQEALWDMGAVSMLKNLIHSKHKMIAM 439 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH------HHHHHHHHTHHHHHHTTTTCSSHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH------HHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 4443332222 24788999999999999999999999999853221 12222 46789999999888999999
Q ss_pred HHHHHHHHHHHHccc
Q 008533 498 AACSAFATLEEEAAE 512 (562)
Q Consensus 498 ~a~~al~~l~~~~~~ 512 (562)
.|+++|.+++..-+.
T Consensus 440 ~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 440 GSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHcCCHh
Confidence 999999999876543
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.24 E-value=7.2e-08 Score=99.24 Aligned_cols=358 Identities=11% Similarity=0.056 Sum_probs=222.7
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
..+++.|.+.+++ ...|..|+.+|..+....... +..+..+.+.+.+.+.+++.+.+..|++.|..+..
T Consensus 295 ~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~---------~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl 363 (778)
T 3opb_A 295 ENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLT---------CINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL 363 (778)
T ss_dssp HHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCT---------TCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCC---------cCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 4456667776654 467777888887776643321 12457788899999998777779999999887754
Q ss_pred hch--hhHHhchHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhCccchh---------h-------------------
Q 008533 210 LMP--SALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVRPSFLE---------P------------------- 258 (562)
Q Consensus 210 ~~~--~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~~~~~~---------~------------------- 258 (562)
... +.+... ..+++.++..++. .+..+...++.+|..+....+.... +
T Consensus 364 ~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 364 KASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp SSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHH
T ss_pred CHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccch
Confidence 221 122222 3556777776663 5567777777777777654332100 0
Q ss_pred -hHH----------HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhh
Q 008533 259 -HLR----------NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (562)
Q Consensus 259 -~l~----------~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~ 327 (562)
++. .+++.+....++.++.++..+...+..++..+.....+.. ...++.++..+....+
T Consensus 443 ~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq--qGal~~LL~lL~s~~~-------- 512 (778)
T 3opb_A 443 EDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ--QGAVKIILEYLANKQD-------- 512 (778)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH--TTHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhcCCC--------
Confidence 000 2344455556677788888888888888766333322221 1334445444431110
Q ss_pred hccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhc------cchhhhhHHHHHHHHcC-
Q 008533 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFG------DEILPTLMPVIQAKLSA- 400 (562)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~------~~~~~~l~~~l~~~l~~- 400 (562)
. . + ..|..|..+|..+..... +.-....++.+.+.+..
T Consensus 513 --------------------------~--~--~-----~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~ 557 (778)
T 3opb_A 513 --------------------------I--G--E-----PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS 557 (778)
T ss_dssp -----------------------------C--C-----HHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCS
T ss_pred --------------------------c--c--h-----HHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCC
Confidence 0 0 0 257778888888874332 21112566777777762
Q ss_pred CCCCC----------chhHHHHHHHHHHHhhcch---hhh-hhhHH--HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHH
Q 008533 401 SGDEA----------WKDREAAVLALGAIAEGCI---KGL-YPHLS--EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 401 ~~~~~----------~~~r~aal~~l~~i~~~~~---~~~-~~~l~--~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
+...+ -..+..|+.+|+.++.... +.+ ...+. ..+|.+...+.+.++.||.+|++++++++..-
T Consensus 558 ~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 558 TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp SSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred CCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 22111 1348899999999998752 233 22343 47899999999999999999999999999742
Q ss_pred hhhcCCCcchhhH----H---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh--hh
Q 008533 465 VQDIGHQNGREQF----E---KVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK--YQ 533 (562)
Q Consensus 465 ~~~~~~~~~~~~~----~---~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~--~~ 533 (562)
.. ....++ + +=++.++..+...+..+|.+|+++|+++....+......+ +..++.++.++.. .+
T Consensus 638 e~-----i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~ 712 (778)
T 3opb_A 638 LT-----IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD 712 (778)
T ss_dssp GG-----TGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred HH-----HHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCC
Confidence 21 001121 1 2377888888888999999999999999754322111111 3677777778877 55
Q ss_pred hhHHHHHHHHHHHHHH
Q 008533 534 RRNLRIVYDAIGTLAD 549 (562)
Q Consensus 534 ~~~~~~~~~~l~~l~~ 549 (562)
.+.+..+.-++..|++
T Consensus 713 ~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 713 IELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666678888888776
No 67
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.21 E-value=1.7e-08 Score=110.14 Aligned_cols=398 Identities=11% Similarity=0.059 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHhcCcCchH----HHHHHHHHHhc---cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhh
Q 008533 109 IRSTVGTIVSVVVQLGGIAGWL----ELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIF 181 (562)
Q Consensus 109 vr~~~~~~i~~i~~~~~~~~w~----~ll~~l~~~l~---~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~i 181 (562)
.|+..+..+..++...+....+ -+.+.+.+.+. +.+|..+++++.+++.+.+.+....... .+ .......+
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~-~~~~lp~l 491 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NE-VDKSPTVL 491 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CS-SSCCBCHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-Cc-ccchhHHH
Confidence 6666665555554443322333 23333444442 3468999999999999999876532110 00 01234556
Q ss_pred HHHHHHhhc-----CCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhh--hccCCCHHHHHHHHHHHHHHHhhCcc
Q 008533 182 LPRLLQFFQ-----SPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFL--LSNDPSAEVRKLVCAAFNLLIEVRPS 254 (562)
Q Consensus 182 l~~l~~~l~-----~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~L~~l~~~~~~ 254 (562)
++.+...++ ++++.||..++.+++.+..+...+ ...++.+++.++. .+.++++.++..++.+|..+++....
T Consensus 492 ~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 492 SQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 666666655 678999999999999999987532 1457788888888 77778889999999999999999998
Q ss_pred chhhhHHHHHHHHHhhcCC-----CCh----------------hHHHHHhhhHHHhhcccc-chhhHHhhhhHHHHHHHh
Q 008533 255 FLEPHLRNLFEYMLQVNKD-----TDD----------------DVALEACEFWHSYFEAQL-PHENLKEFLPRLVPVLLS 312 (562)
Q Consensus 255 ~~~~~l~~i~~~~~~~~~~-----~~~----------------~v~~~a~~~l~~~~~~~~-~~~~~~~~l~~l~~~l~~ 312 (562)
.+.+|++.++..+...+.- .++ +-+...++.++.+..... ..+....++..+++.++.
T Consensus 571 ~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~ 650 (980)
T 3ibv_A 571 QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIG 650 (980)
T ss_dssp TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999988877554321 111 135566777777765411 123334566666655543
Q ss_pred hcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---c----
Q 008533 313 NMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---E---- 385 (562)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~---- 385 (562)
.+... .... .. .+++ .. .+ .....+++.++..+.+ .
T Consensus 651 ~l~~~---l~~~---------------------------~~---~~~~--~~-~i-~~~i~al~~lakgf~~~~~~~~p~ 693 (980)
T 3ibv_A 651 KANAA---LSSD---------------------------LS---ALEN--II-SV-YCSLMAIGNFAKGFPARGSEEVAW 693 (980)
T ss_dssp HHHHH---HTTS---------------------------CC-----CH--HH-HH-HHHHHHHHHHHHTSCSCC-CCCSH
T ss_pred HHHHH---Hhhc---------------------------cc---CccH--HH-HH-HHHHHHHHHHhccCCcccCCCCcH
Confidence 32100 0000 00 0000 00 11 1235567788877643 1
Q ss_pred --hhhhhHHHHHHHHc--CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 386 --ILPTLMPVIQAKLS--ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 386 --~~~~l~~~l~~~l~--~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
.+..+++.+...+. ..+ ..+|+++..++..+....+..+.++++.++..++..+. +.--...++.+|.+.
T Consensus 694 ~~~f~~~~~~il~~l~~~~~~---~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~---~~e~~~fL~l~~qli 767 (980)
T 3ibv_A 694 LASFNKASDEIFLILDRMGFN---EDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSID---MNELVDVLSFISQLI 767 (980)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS---HHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCC---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH
Confidence 22344555555555 344 89999999999999999999999999999998885443 223455778889988
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHc-cccc-----cccHHHHHHHHH
Q 008533 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTN---------KRVQEAACSAFATLEEEA-AEEL-----APRLEIILQHLM 526 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~---------~~vr~~a~~al~~l~~~~-~~~~-----~~~l~~il~~L~ 526 (562)
..++..+. +.....+.+++..++..|..+. ..++++-...+..++.+- ...+ .++++.++..++
T Consensus 768 ~~f~~~~~-~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~ 846 (980)
T 3ibv_A 768 HIYKDNMM-EITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSIL 846 (980)
T ss_dssp HHTTTTSH-HHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHH
Confidence 87754210 0123334445555555565421 225555555666666643 3433 357888888888
Q ss_pred HHHhh-hhhhHHHHHHHHHHHHHHHHhh
Q 008533 527 MAFGK-YQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 527 ~~l~~-~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
..... ++...++.++..+..++...|.
T Consensus 847 ~~a~~~~d~~~~K~a~~~l~~~v~~~~~ 874 (980)
T 3ibv_A 847 HFANLVGEPATQKSSIALVSKMVSLWGG 874 (980)
T ss_dssp HHC-----CHHHHHHHHHHHHHHHC---
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHCC
Confidence 76554 3456788999999998888753
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.20 E-value=7.9e-08 Score=102.32 Aligned_cols=341 Identities=13% Similarity=0.139 Sum_probs=232.6
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhc---CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCC
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLG---GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGL 173 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~---~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~ 173 (562)
.+++.+...+..-|+.++..++.+.... ..-.| .++..+.+.+.+.... ++|+.++..+++..+..- -
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~------~ 88 (986)
T 2iw3_A 18 ELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP------S 88 (986)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT------T
T ss_pred HHHhhccccchhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC------C
Confidence 3555555433444567777888877653 12345 7888898888775433 999999999998775421 1
Q ss_pred CcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHhhC
Q 008533 174 AECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSND-PSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 174 ~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~~l~~~~ 252 (562)
.++++-.++|.++..+.|....||.+|-.+...++..+++.-. ..+++.++..+.. ..+..+..++.++..+++..
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~ 165 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI---KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA 165 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 1356667899999999999999999999999999987765322 3445555555432 35899999999999999999
Q ss_pred ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCC
Q 008533 253 PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESL 332 (562)
Q Consensus 253 ~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 332 (562)
++.+...+++++|.+..++.|..++|...|...+..+|.. .....+.++++.|+..+ ...+
T Consensus 166 ~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~~~~~~~~~~~~----~~p~-------------- 226 (986)
T 2iw3_A 166 KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDIERFIPSLIQCI----ADPT-------------- 226 (986)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTTGGGHHHHHHHH----HCTT--------------
T ss_pred HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcchhhhHHHHHHHh----cChh--------------
Confidence 9999999999999999999999999999999999998876 12234556665555554 2111
Q ss_pred CCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh-----ccchhhhhHHHHHHHHcCCCCCCch
Q 008533 333 PDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-----GDEILPTLMPVIQAKLSASGDEAWK 407 (562)
Q Consensus 333 ~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-----~~~~~~~l~~~l~~~l~~~~~~~~~ 407 (562)
...+|+..|+... ....+..+.|.+.+.++... ..
T Consensus 227 -------------------------------------~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~---~~ 266 (986)
T 2iw3_A 227 -------------------------------------EVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE---TG 266 (986)
T ss_dssp -------------------------------------HHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS---HH
T ss_pred -------------------------------------hhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc---ch
Confidence 0334566666533 23567788899999998765 34
Q ss_pred hHHHHHHHHHHHhhcc--hhhhhhhHHHHHHHHhhhcC-CCChhHHHHHHHHHHHhHHHHhh-hcC---CCcchhhHHHH
Q 008533 408 DREAAVLALGAIAEGC--IKGLYPHLSEIVAFLIPLLD-DKFPLIRSISCWTLSRFSKFIVQ-DIG---HQNGREQFEKV 480 (562)
Q Consensus 408 ~r~aal~~l~~i~~~~--~~~~~~~l~~~~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~-~~~---~~~~~~~~~~i 480 (562)
.+.-+...+.+++.-. +....+|++.++|.+.+... -++|.+|..|-.++..+-..... .-+ +.........+
T Consensus 267 ~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (986)
T 2iw3_A 267 IKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTT 346 (986)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHH
T ss_pred hheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhccccccccccccccchHHHH
Confidence 4444444566666544 34568999999999988776 47899999998888888765432 100 00112334555
Q ss_pred HHHHHHHhccCC-----HHHHHHHHHHHHHHHH
Q 008533 481 LMGLLKRILDTN-----KRVQEAACSAFATLEE 508 (562)
Q Consensus 481 l~~l~~~l~d~~-----~~vr~~a~~al~~l~~ 508 (562)
+..+...+.... ..+..+++...+.++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 379 (986)
T 2iw3_A 347 LQVVNELLKDETVAPRFKIVVEYIAAIGADLID 379 (986)
T ss_dssp HHHHHHHTTTSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHHHHhh
Confidence 555655555422 3344455555455544
No 69
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.16 E-value=2.6e-09 Score=105.53 Aligned_cols=351 Identities=12% Similarity=0.089 Sum_probs=202.7
Q ss_pred HHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCC------------CHHHHHH
Q 008533 132 LLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSP------------HTSLRKL 199 (562)
Q Consensus 132 ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~------------~~~vr~~ 199 (562)
.++.+.+.+.+.++.. ....|..+....+.-.. ..-...+|.|+++++.. +++++..
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~--------~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCIS--------MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSSTTHHHH--------HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHH--------HHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 3455666666665543 44455555554443110 12366899999999863 2699999
Q ss_pred HHHHHHHHHhhchhhHHh--------ch---HHHHHHHhhhccCC----C---HHHHH-------HHHHHHHHHHhhCcc
Q 008533 200 SLGSVNQFIMLMPSALFV--------SM---DQYLQGLFLLSNDP----S---AEVRK-------LVCAAFNLLIEVRPS 254 (562)
Q Consensus 200 al~~l~~~~~~~~~~~~~--------~~---~~~l~~l~~~~~~~----~---~~~~~-------~~~~~L~~l~~~~~~ 254 (562)
|.+++.+++..-|+.... .+ ......+++.+... + ..++. +++.+|..+... ++
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 999999999876643221 11 11112222222211 1 01333 677777777433 22
Q ss_pred chhhhHH--HHHHHHHhhcC-----------CCChhHHHHHhhhHHHhhccccchhhHHhh---hhHHHHHHHhhcccCh
Q 008533 255 FLEPHLR--NLFEYMLQVNK-----------DTDDDVALEACEFWHSYFEAQLPHENLKEF---LPRLVPVLLSNMIYAD 318 (562)
Q Consensus 255 ~~~~~l~--~i~~~~~~~~~-----------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~---l~~l~~~l~~~l~~~~ 318 (562)
.+..+- ..++.++..+. .....++..|...+..++..+. ..+.. ....+|.++..+...+
T Consensus 181 -~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~---~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 181 -HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV---ANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCc---ccHHHHHHcCCcHHHHHHHHhCCC
Confidence 222221 12333333221 1235688899999999987522 12221 2345777776664211
Q ss_pred hhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc----chh-hhhHHH
Q 008533 319 DDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD----EIL-PTLMPV 393 (562)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~----~~~-~~l~~~ 393 (562)
+ .++..|..+|..|+..-.+ .+. ...+|.
T Consensus 257 ~----------------------------------------------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 257 E----------------------------------------------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp H----------------------------------------------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred H----------------------------------------------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 1 2566788888888753111 121 245677
Q ss_pred HHHHH-cCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHHHhhhcCCCCh----hHHHHHHHHHHHhHHHHhh
Q 008533 394 IQAKL-SASGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAFLIPLLDDKFP----LIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 394 l~~~l-~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~~~ 466 (562)
+.+.+ .+.+ ...++.++.+|+.++..+.+.-.... ...+|.+...+.+.++ .++..|+++|.+++.++..
T Consensus 291 LV~lLl~s~~---~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 291 LMECALEVKK---ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHTTCCS---HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCC---HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 77764 4455 88999999999999985533222222 3578888888876544 4999999999999874211
Q ss_pred hcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH-HHHHHHHHHHHhhhhhhHHHHHHHH
Q 008533 467 DIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-EIILQHLMMAFGKYQRRNLRIVYDA 543 (562)
Q Consensus 467 ~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l-~~il~~L~~~l~~~~~~~~~~~~~~ 543 (562)
.......+ ...++.++..|.+.+..++..|+++|.+++....+...... ...++.|+.++...+.+.++.+..+
T Consensus 368 ---~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 368 ---NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ---CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 00111221 35688899999988999999999999999843222111111 3567778888877777778899999
Q ss_pred HHHHHHH
Q 008533 544 IGTLADA 550 (562)
Q Consensus 544 l~~l~~~ 550 (562)
|..++..
T Consensus 445 L~nL~~~ 451 (458)
T 3nmz_A 445 LRNLMAN 451 (458)
T ss_dssp HHHHHTC
T ss_pred HHHHHcC
Confidence 9888753
No 70
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.14 E-value=2.2e-09 Score=94.89 Aligned_cols=184 Identities=21% Similarity=0.180 Sum_probs=134.8
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhH
Q 008533 220 DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENL 299 (562)
Q Consensus 220 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 299 (562)
+...+.+++.+.++++.+|..++..|..+... ..++.++..+.+.++.+|..++..++.+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 34566777788899999999999999875431 2344455566788999999999988877542
Q ss_pred HhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHH
Q 008533 300 KEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLS 379 (562)
Q Consensus 300 ~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~ 379 (562)
..++.++..+.. ..+.+|..+..+|..+.
T Consensus 76 -----~~~~~L~~~l~d----------------------------------------------~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 76 -----RAVEPLIKALKD----------------------------------------------EDGWVRQSAAVALGQIG 104 (201)
T ss_dssp -----GGHHHHHHHTTC----------------------------------------------SSHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHcC----------------------------------------------CCHHHHHHHHHHHHHhC
Confidence 122333322210 01357888888887653
Q ss_pred hhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 008533 380 NVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSR 459 (562)
Q Consensus 380 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~ 459 (562)
. +..++.+.+.+.+++ |.+|..++.+|+.+.. +..++.+...+.|+++.||..|++++++
T Consensus 105 ~-------~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 105 D-------ERAVEPLIKALKDED---WFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp C-------GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred c-------HHHHHHHHHHHcCCC---HHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 246677778888888 9999999999999864 1246777888899999999999999998
Q ss_pred hHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
+.. +..++.+...++|+++.||..|..+|+++
T Consensus 165 ~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 165 IGG---------------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred hCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 842 23556666777888999999999999875
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.13 E-value=1.7e-09 Score=96.44 Aligned_cols=185 Identities=21% Similarity=0.179 Sum_probs=133.0
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhh
Q 008533 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEF 302 (562)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 302 (562)
++.+...+.++++.+|..++..|..+.. +..++.+...+.+.++.+|..++..++.+...
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---------- 80 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---------- 80 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----------
Confidence 5566666778899999999999987643 13445555667788999999999988887542
Q ss_pred hhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh
Q 008533 303 LPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF 382 (562)
Q Consensus 303 l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~ 382 (562)
..++.++..+.. ..+.+|..+..++..+..
T Consensus 81 --~~~~~L~~~l~~----------------------------------------------~~~~vr~~a~~aL~~~~~-- 110 (211)
T 3ltm_A 81 --RAVEPLIKALKD----------------------------------------------EDGWVRQSAAVALGQIGD-- 110 (211)
T ss_dssp --GGHHHHHHHTTC----------------------------------------------SSHHHHHHHHHHHHHHCC--
T ss_pred --HHHHHHHHHHcC----------------------------------------------CCHHHHHHHHHHHHHhCc--
Confidence 122333332210 012578888888876632
Q ss_pred ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHH
Q 008533 383 GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 383 ~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 462 (562)
+..++.+.+.+.+++ |.+|..++.+|+.+... ..++.+...+.|+++.||..|+++++++..
T Consensus 111 -----~~~~~~L~~~l~d~~---~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 111 -----ERAVEPLIKALKDED---WFVRIAAAFALGEIGDE----------RAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp -----GGGHHHHHHHTTCSS---HHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred -----HHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 345677888888888 99999999999998531 246777788899999999999999998742
Q ss_pred HHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Q 008533 463 FIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 463 ~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~ 510 (562)
+..++.+...++|+++.||..|..+|..+....
T Consensus 173 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 ---------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 345666777778889999999999999877654
No 72
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.12 E-value=2.9e-09 Score=94.96 Aligned_cols=191 Identities=17% Similarity=0.134 Sum_probs=144.8
Q ss_pred HHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcC--ch--HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccccc
Q 008533 94 IKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIA--GW--LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSD 169 (562)
Q Consensus 94 i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~--~w--~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~ 169 (562)
....|..+|.++++.+|..++.+++.++...... .. ...++.|.++++++++.++..++.+|+.++...+.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~- 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA- 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH-
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-
Confidence 3456777888999999999999999998653211 11 246889999999999999999999999998654432110
Q ss_pred CCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhch-HHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 170 VPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSM-DQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 170 ~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
-.-...+|.++..+.++++.+|..|+.++..+....+......+ ...++.+...+.++++.++..++.+|..+
T Consensus 92 ------i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 92 ------VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp ------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ------HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 01245789999999999999999999999999875443322222 24577888888888899999999999999
Q ss_pred HhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 249 IEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 249 ~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
+...++....... ..++.+...+.+.+++++..|..++..+++
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9865544322222 467778888888999999999999988875
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.11 E-value=1.1e-08 Score=108.81 Aligned_cols=263 Identities=12% Similarity=0.183 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhhC-ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhccc
Q 008533 238 RKLVCAAFNLLIEVR-PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIY 316 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~-~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~ 316 (562)
+..+...+..+.... .....+ ..++..+.....+.... ..|+..+..+++.........||+-.++|.++.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d 106 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN 106 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence 455566666665533 222222 25666666666654333 7788888888876333334567777777777654321
Q ss_pred ChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHH
Q 008533 317 ADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA 396 (562)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~ 396 (562)
....+|.+|..+...+...++...+..++|.+..
T Consensus 107 ----------------------------------------------k~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~ 140 (986)
T 2iw3_A 107 ----------------------------------------------KDKEIQSVASETLISIVNAVNPVAIKALLPHLTN 140 (986)
T ss_dssp ----------------------------------------------SSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred ----------------------------------------------CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0125899999999999999988777899999988
Q ss_pred HHcCC-CCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh--------
Q 008533 397 KLSAS-GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD-------- 467 (562)
Q Consensus 397 ~l~~~-~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-------- 467 (562)
.+.+. . |+.+.+|+.+++.+++..++.+...++.++|.+...+.|..+.|+.+|..++..+|..+.+.
T Consensus 141 ~~~~~~k---w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~ 217 (986)
T 2iw3_A 141 AIVETNK---WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPS 217 (986)
T ss_dssp HHHHCCC---HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHH
T ss_pred Hhccccc---hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHH
Confidence 88754 6 99999999999999998888889999999999999999999999999999999988754421
Q ss_pred ----c-CCC-----------------cchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc--cccccccHHHHHH
Q 008533 468 ----I-GHQ-----------------NGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA--AEELAPRLEIILQ 523 (562)
Q Consensus 468 ----~-~~~-----------------~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~--~~~~~~~l~~il~ 523 (562)
+ +|. ...+.+.-+.|.|.+.|++....+++.++-.+.++++-. +....||+|.+++
T Consensus 218 ~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p 297 (986)
T 2iw3_A 218 LIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLP 297 (986)
T ss_dssp HHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHH
T ss_pred HHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhh
Confidence 0 111 124445666788888999888999999999999999877 5578899999999
Q ss_pred HHHHHHhhhh-hhHHHHHHHHHHHHHHHHhh
Q 008533 524 HLMMAFGKYQ-RRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 524 ~L~~~l~~~~-~~~~~~~~~~l~~l~~~~~~ 553 (562)
.|.+...... .+.+..+-.|+.++.+..+.
T Consensus 298 ~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 298 GLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999888754 45566888888888776553
No 74
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.10 E-value=2.6e-09 Score=95.30 Aligned_cols=191 Identities=13% Similarity=0.085 Sum_probs=144.0
Q ss_pred CCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
-+++.+..|.+.|. ++|.. +|..|...|.++.. ++.+..|...+. +.++.+|..|+..|.+.- .+
T Consensus 16 ~~~~~~~~L~~~L~---~~~~~-vR~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~-------~~ 80 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQ---DDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DE 80 (211)
T ss_dssp CCGGGHHHHHHHTT---CSSHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSCHHHHHHHHHHHHHHC-------CG
T ss_pred cCHhHHHHHHHHHc---CCCHH-HHHHHHHHHHHhCC-ccHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CH
Confidence 34566666666654 78888 99999999998765 567788888776 568999999998877652 12
Q ss_pred hhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccc
Q 008533 89 SNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 168 (562)
+ ..+.|.+.|.++++.||..++.+++.+.. ++.++.|.+.+.++++.+|..++.+|+.+..
T Consensus 81 ~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 141 (211)
T 3ltm_A 81 R----AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 141 (211)
T ss_dssp G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred H----HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 2 23466677889999999999999998753 3466788888899999999999999988732
Q ss_pred cCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
...++.+...++++++.||..|+.++..+.. +..++.+...++++++.+|..+.++|..+
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3367788899999999999999999998743 23344555556678899999999999887
Q ss_pred HhhCc
Q 008533 249 IEVRP 253 (562)
Q Consensus 249 ~~~~~ 253 (562)
....+
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 66543
No 75
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.10 E-value=2.5e-06 Score=92.92 Aligned_cols=194 Identities=11% Similarity=0.107 Sum_probs=134.6
Q ss_pred hhcHhhhHHHHHHHHHhhhcc----chhhhhHHHHHHHHcCCCCCCch--hHHHHHHHHHHHhhcchhhhhhhHHHHHHH
Q 008533 364 VWNLRKCSAAALDVLSNVFGD----EILPTLMPVIQAKLSASGDEAWK--DREAAVLALGAIAEGCIKGLYPHLSEIVAF 437 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~--~r~aal~~l~~i~~~~~~~~~~~l~~~~~~ 437 (562)
.|..+.++..+++.++....+ .++|.+++.+.+...++.+..-+ .+...++.+|+..+-.... ..+++.++..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~~ 570 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVNK 570 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHHH
Confidence 488899999999999876642 67888888888777644210023 3333446777766654433 4688999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHhHHHHhhhcC---CCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccc
Q 008533 438 LIPLLDDKFPLIRSISCWTLSRFSKFIVQDIG---HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL 514 (562)
Q Consensus 438 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~ 514 (562)
++..+.++++.|+.+||.++..++..+...+- +....+|+++++..+.....+=.+.-...-..+++.++...+...
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~ 650 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQT 650 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999998876421 123457899999988887766556666778889999998875432
Q ss_pred --cccHHHH----HHHHHHHHhhh--------hh---hHHHHHHHHHHHHHHHHhhhhhccc
Q 008533 515 --APRLEII----LQHLMMAFGKY--------QR---RNLRIVYDAIGTLADAVGFELNQVL 559 (562)
Q Consensus 515 --~~~l~~i----l~~L~~~l~~~--------~~---~~~~~~~~~l~~l~~~~~~~~~~~~ 559 (562)
..++..+ .+.+-.+++.. +. +.+..++++...++.++|..+ .|+
T Consensus 651 ~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f-~~~ 711 (1073)
T 3gjx_A 651 VQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPF-VIQ 711 (1073)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhH-HHH
Confidence 3344444 44444444321 11 234478899999999999754 443
No 76
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.09 E-value=5.4e-09 Score=93.14 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=139.9
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHh
Q 008533 223 LQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKE 301 (562)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 301 (562)
.+.+..++.+++++++..++.+|..++...++....... ..++.++..+.+.+++++..|+..+..++... .. .
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~-~-- 88 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NE-Q-- 88 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HH-H--
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--cH-H--
Confidence 445556677888999999999999998665544333332 46777888888888889998888888887530 00 0
Q ss_pred hhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh
Q 008533 302 FLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV 381 (562)
Q Consensus 302 ~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~ 381 (562)
+. .+..
T Consensus 89 ------------------------------------------------------------------~~-------~i~~- 94 (210)
T 4db6_A 89 ------------------------------------------------------------------IQ-------AVID- 94 (210)
T ss_dssp ------------------------------------------------------------------HH-------HHHH-
T ss_pred ------------------------------------------------------------------HH-------HHHH-
Confidence 00 0000
Q ss_pred hccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHh
Q 008533 382 FGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRF 460 (562)
Q Consensus 382 ~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l 460 (562)
...++.+.+.+++++ +..|..|+.+|+.++.+..+.....+ ..+++.++..+.++++.+|..|+++++++
T Consensus 95 ------~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 95 ------AGALPALVQLLSSPN---EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp ------TTCHHHHHHHTTCSC---HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHcCCc---HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 134566777778887 99999999999999986654433333 34789999999999999999999999999
Q ss_pred HHHHhhhcCCCcchhh-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 461 SKFIVQDIGHQNGREQ-FEKVLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
+..-+.. .... -...++.++..+.++++.+|..|+.+|.+++.
T Consensus 166 ~~~~~~~-----~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQ-----KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHH-----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHH-----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9753221 1111 23678889999999999999999999998753
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.09 E-value=1.7e-07 Score=76.53 Aligned_cols=214 Identities=15% Similarity=0.229 Sum_probs=137.5
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
..++..++..+.|.-+.|++.|+..+..+....|+...+ ++..++.++ ++..-.....+.+.++.++...|+.+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 456666777777777777777777777777666543332 233333332 233334445566666666666665543
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
.++|.+.....-.++.++....-.+..++.
T Consensus 107 ----~vVp~lfanyrigd~kikIn~~yaLeeIar---------------------------------------------- 136 (253)
T 2db0_A 107 ----SMIPVLFANYRIGDEKTKINVSYALEEIAK---------------------------------------------- 136 (253)
T ss_dssp ----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred ----hhHHHHHHHHhcCCccceecHHHHHHHHHH----------------------------------------------
Confidence 344444443333455555443333333332
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHH
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALG 417 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~ 417 (562)
..| ..++.+..-+...+.|++ -..|.+|+.+++
T Consensus 137 -------------------------------------------anP-~l~~~v~rdi~smltskd---~~Dkl~aLnFi~ 169 (253)
T 2db0_A 137 -------------------------------------------ANP-MLMASIVRDFMSMLSSKN---REDKLTALNFIE 169 (253)
T ss_dssp -------------------------------------------HCH-HHHHHHHHHHHHHTSCSS---HHHHHHHHHHHH
T ss_pred -------------------------------------------hCh-HHHHHHHHHHHHHhcCCC---hHHHHHHHHHHH
Confidence 221 222344444555566777 788999999999
Q ss_pred HHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHH
Q 008533 418 AIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQE 497 (562)
Q Consensus 418 ~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~ 497 (562)
.+.+...+.+.|| +|.++..|.|.+..||..|..+++.++..- +-+..++..-+.-++|++..|+.
T Consensus 170 alGen~~~yv~Pf----LprL~aLL~D~deiVRaSaVEtL~~lA~~n----------pklRkii~~kl~e~~D~S~lv~~ 235 (253)
T 2db0_A 170 AMGENSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHLATLN----------DKLRKVVIKRLEELNDTSSLVNK 235 (253)
T ss_dssp TCCTTTHHHHGGG----HHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----------HHHHHHHHHHHHHCCCSCHHHHH
T ss_pred HHhccCccccCcc----hHHHHHHHcCcchhhhHHHHHHHHHHHHcC----------HHHHHHHHHHHHHhcCcHHHHHH
Confidence 8888766655554 566778889999999999999999999852 33677788888889999999999
Q ss_pred HHHHHHHHHH
Q 008533 498 AACSAFATLE 507 (562)
Q Consensus 498 ~a~~al~~l~ 507 (562)
....+|+.+.
T Consensus 236 ~V~egL~rl~ 245 (253)
T 2db0_A 236 TVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 78
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.05 E-value=8.6e-09 Score=91.08 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYI 94 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i 94 (562)
...-.++..+.++|.. +|..|...|.++.. ++.+..|...+. +.++.+|..|+..|.+.- +++ .
T Consensus 14 ~~~~~~i~~L~~~~~~-vr~~A~~~L~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~-------~~~----~ 77 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYY-VRRAAAYALGKIGD-ERAVEPLIKALK---DEDAWVRRAAADALGQIG-------DER----A 77 (201)
T ss_dssp HHHHHHHHHTTCSCHH-HHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC-------CGG----G
T ss_pred cchHHHHHHhcCCCHH-HHHHHHHHHHhcCC-hhHHHHHHHHHc---CCCHHHHHHHHHHHHhhC-------CHH----H
Confidence 3344455555589999 99999999998764 456777888775 568999999988776641 122 2
Q ss_pred HHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCC
Q 008533 95 KSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLA 174 (562)
Q Consensus 95 ~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~ 174 (562)
.+.|...|.++++.+|..++.+++.+.. ++.++.|.+.++++++.+|..++.+|+.+..
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------- 136 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------------- 136 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------
Confidence 3466678889999999999999998753 3466778888899999999999999988732
Q ss_pred cchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 008533 175 ECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLL 248 (562)
Q Consensus 175 ~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l 248 (562)
...++.+...+.++++.||..|+.+++.+.. +..++.+...+.++++.+|..+.+.|..+
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3467788999999999999999999998732 22344555555677899999999988764
No 79
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.94 E-value=1.9e-08 Score=93.55 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=126.6
Q ss_pred hhhHHHHHHHHHhhhcc--chh-hhhHHHHHH-HHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHhhhc
Q 008533 368 RKCSAAALDVLSNVFGD--EIL-PTLMPVIQA-KLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLIPLL 442 (562)
Q Consensus 368 r~~a~~~l~~l~~~~~~--~~~-~~l~~~l~~-~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~~~l 442 (562)
+..|...|..++..... .+. ...+|.+.. ++++++ ..+|..|+++||.++.+....-...+. ..+|.++..|
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~---~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGA---AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666654322 221 245677777 888888 999999999999999865432222222 4778888888
Q ss_pred C-CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH-H
Q 008533 443 D-DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL-E 519 (562)
Q Consensus 443 ~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l-~ 519 (562)
. ++++.+|..|+|+|++++...++. ...+. ...++.|+..|+++++.+|..|+++|++++....+...... .
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~-----~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~ 208 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAG-----LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 208 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHH-----HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHH-----HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc
Confidence 7 568999999999999998754321 12222 36788899999999999999999999999987433222222 3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 008533 520 IILQHLMMAFGKYQRRNLRIVYDAIGTLADA 550 (562)
Q Consensus 520 ~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~ 550 (562)
.+++.|+.++...+...+..++.+|+.++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 5778888888888778888999999988865
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.90 E-value=1.4e-06 Score=71.29 Aligned_cols=159 Identities=17% Similarity=0.266 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ-SPHTSLRKLSLGSVNQFI 208 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~-~~~~~vr~~al~~l~~~~ 208 (562)
.+++..++..+.++-|.++.+|+.++..+.+..++. ...++..++..+. +..........++|+.+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el------------~epl~~kL~vm~~ksEaIpltqeIa~a~G~la 98 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL------------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMA 98 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG------------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH------------HHHHHHHHHHHHhhcccCchHHHHHHHHhHHH
Confidence 578899999999999999999999999999988864 3445666666654 455667778888999988
Q ss_pred hhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHH
Q 008533 209 MLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS 288 (562)
Q Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~ 288 (562)
..-|+.+ ..+++.++....-.++++|.....+|..++..+|..+.....++.. .+.+++..-+..|+.|+..
T Consensus 99 ~i~Pe~v----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~s----mltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 99 KEKPELV----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMS----MLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp HHCHHHH----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH----HTSCSSHHHHHHHHHHHHT
T ss_pred HhCHHHH----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHH----HhcCCChHHHHHHHHHHHH
Confidence 8766544 4456677776666689999999999999999999987665555554 4567777779999999999
Q ss_pred hhccccchhhHHhhhhHHHHHH
Q 008533 289 YFEAQLPHENLKEFLPRLVPVL 310 (562)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~~~l 310 (562)
+.+. ..+++.|+++.++..+
T Consensus 171 lGen--~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 171 MGEN--SFKYVNPFLPRIINLL 190 (253)
T ss_dssp CCTT--THHHHGGGHHHHHGGG
T ss_pred Hhcc--CccccCcchHHHHHHH
Confidence 9887 6677888888765553
No 81
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.90 E-value=1e-05 Score=90.79 Aligned_cols=471 Identities=11% Similarity=0.054 Sum_probs=240.3
Q ss_pred HHHHHHHHhcC----CCCHHHHHHHHHHHHHhhc------CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh--h
Q 008533 16 EICRLLEQQIS----PSSTADKSQIWQQLQQYSQ------FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTA--Y 83 (562)
Q Consensus 16 ~l~~~l~~~~s----~d~~~~r~~A~~~L~~~~~------~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~--w 83 (562)
.+.+.+....+ +... +|++....+..+.. =|+++..+...+.+ ++..+..+..+|+...... .
T Consensus 93 ~ll~~l~~~~~~~~~~~~~-vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~----~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 93 SVMELIANGTLNILEEENH-IKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ----GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHSSCCTTSSCHH-HHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhccccccccHH-HHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHccc
Confidence 34555544322 2344 88888888877432 25666667666643 4566777777777765431 1
Q ss_pred ccCChhhHHHHHH-----------HHhhhhhC-------------------CchHHHHHHHHHHHHHHHhcCcCch----
Q 008533 84 KSMSPSNQQYIKS-----------ELLPCLGA-------------------ADRHIRSTVGTIVSVVVQLGGIAGW---- 129 (562)
Q Consensus 84 ~~l~~~~~~~i~~-----------~ll~~l~~-------------------~~~~vr~~~~~~i~~i~~~~~~~~w---- 129 (562)
..+...-+..+++ .+.+.+.+ ++..++..+..++.......+.+..
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~ 247 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAEN 247 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhcc
Confidence 2233322222222 22222221 1122333333333322221111111
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc--------CCCHHHHHHHH
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ--------SPHTSLRKLSL 201 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~--------~~~~~vr~~al 201 (562)
+.+++.+...+. ++..|..|+.||..++...... . +...++.......+..+++... +.+.++++...
T Consensus 248 ~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~-~-~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 248 CKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKL-E-DRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp SHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCH-H-HHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCCh-h-hHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 236777776655 4678999999999999754310 0 0000111011111223444331 12356666766
Q ss_pred HHHHHHHhhchhh--------HHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC----ccchhhhHHHHHHHH--
Q 008533 202 GSVNQFIMLMPSA--------LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR----PSFLEPHLRNLFEYM-- 267 (562)
Q Consensus 202 ~~l~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~----~~~~~~~l~~i~~~~-- 267 (562)
+.+..+....... ....+..+++.++..+++++..+...++..+..+.+.. .+.+.+++..+++.+
T Consensus 324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~ 403 (1204)
T 3a6p_A 324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMT 403 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 6666665432211 12346678888888888888888888888888777653 244667888888887
Q ss_pred -HhhcCCCC------------------------hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 268 -LQVNKDTD------------------------DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 268 -~~~~~~~~------------------------~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
+..+.-++ .+.|....+++..++.. ..... +..+.+.+...+...-+...
T Consensus 404 ~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v--~p~~~---l~~v~~~l~~~l~~~l~~~~ 478 (1204)
T 3a6p_A 404 NLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRL--DPKTS---FQMAGEWLKYQLSTFLDAGS 478 (1204)
T ss_dssp HHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHH---HHHHHHHHHHHHTCC-----
T ss_pred HHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhc--CHHHH---HHHHHHHHHHHHhhhhcccc
Confidence 43322111 01233333334333332 11111 11111222111111000000
Q ss_pred hhhhhhccCCCCCCCCCCcccccccCCCCCC-CCCCCccccchhcHhhhHHHHHHHHHhhh---c--cchhhhhHHHHHH
Q 008533 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSEN-PEDDDDDIVNVWNLRKCSAAALDVLSNVF---G--DEILPTLMPVIQA 396 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~d~~~~~~~r~~a~~~l~~l~~~~---~--~~~~~~l~~~l~~ 396 (562)
.|. .+.... + +. .- ...+..|....+....++.+...+ . +.....+.+.+.+
T Consensus 479 ~~~----------------~~~~~~--~-~~~~~---~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 479 VNS----------------CSAVGT--G-EGSLC---SVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp -------------------------------CCS---CSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred ccc----------------cccccc--c-ccccc---CcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 000 000000 0 00 00 001124555555555666665544 1 1111123333333
Q ss_pred H-Hc--CCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCC------------CChhHHHHHHHHHHHhH
Q 008533 397 K-LS--ASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDD------------KFPLIRSISCWTLSRFS 461 (562)
Q Consensus 397 ~-l~--~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d------------~~~~vr~~a~~~l~~l~ 461 (562)
. ++ ..+ +..|...+.+++.+..-... -..+++.++..++..+.+ .+..||.+|+.++.+++
T Consensus 537 ~ll~~~~~~---p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~ 612 (1204)
T 3a6p_A 537 MVLNFDTKD---PLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMC 612 (1204)
T ss_dssp HHHHCCCSC---HHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCC---hHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 3 32 235 88999999999988876542 246788888888877655 23489999999999999
Q ss_pred HHHhhhcCCCcchhhHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHccc--cccccHHHHHHHHHHHHhh
Q 008533 462 KFIVQDIGHQNGREQFEKVLMGLLKRILDTN---KRVQEAACSAFATLEEEAAE--ELAPRLEIILQHLMMAFGK 531 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~---~~vr~~a~~al~~l~~~~~~--~~~~~l~~il~~L~~~l~~ 531 (562)
..++.. ..+|++++...+...+.... ..-+..-..++..+....++ .-..|+..+++.++..+..
T Consensus 613 ~~~~~~-----L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 613 RDYPQL-----VLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHCHHH-----HGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhHH-----HHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 988764 57899999998887775332 44455666777666444322 2233455555555555543
No 82
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.89 E-value=1.1e-07 Score=91.09 Aligned_cols=225 Identities=15% Similarity=0.076 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHHHHhhCccchhhh---HHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccc--cchhhHHhhhhHHHH
Q 008533 234 SAEVRKLVCAAFNLLIEVRPSFLEPH---LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ--LPHENLKEFLPRLVP 308 (562)
Q Consensus 234 ~~~~~~~~~~~L~~l~~~~~~~~~~~---l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~--~~~~~~~~~l~~l~~ 308 (562)
++.++..+..+|..++...... +.. ....+|.++..+.+.+++++..|...+..++..+ .....+.. ...+|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~-k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~Ip 173 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVAN-KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVK 173 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHH-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCHH
Confidence 3678999999999998654322 122 2356888888888889999999999999987631 11111211 13455
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhh-cc--c
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVF-GD--E 385 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~-~~--~ 385 (562)
.++..+..+.+ ..++..+..+|..|+... +. .
T Consensus 174 ~Lv~lL~~~~~---------------------------------------------~~~~~~A~~aL~nLs~~~~~nk~~ 208 (354)
T 3nmw_A 174 ALMECALEVKK---------------------------------------------ESTLKSVLSALWNLSAHCTENKAD 208 (354)
T ss_dssp HHHHHHHHCCC---------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCC---------------------------------------------HHHHHHHHHHHHHHHccChhhhHH
Confidence 55543321100 135666778888888633 21 2
Q ss_pred h--hhhhHHHHHHHHcCCCCC-CchhHHHHHHHHHHHhh---cchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHH
Q 008533 386 I--LPTLMPVIQAKLSASGDE-AWKDREAAVLALGAIAE---GCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLS 458 (562)
Q Consensus 386 ~--~~~l~~~l~~~l~~~~~~-~~~~r~aal~~l~~i~~---~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~ 458 (562)
+ ....+|.+.+.+.+.+.. +...++.|..+|..++. +..+...... ...+|.++..|.+.+..++..|+++|+
T Consensus 209 i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 288 (354)
T 3nmw_A 209 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288 (354)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3 246788888888865421 12578888889998886 4433322222 236889999999999999999999999
Q ss_pred HhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc
Q 008533 459 RFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE 512 (562)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~ 512 (562)
+++..-++ ....+ ...++.|+..+.+.++.+|..|+++|.+++..-+.
T Consensus 289 nLa~~~~~------~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 289 NLSARNPK------DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTSSCHH------HHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHhCCCHH------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99853221 12222 36689999999888999999999999999987543
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.87 E-value=1.1e-07 Score=89.82 Aligned_cols=317 Identities=13% Similarity=0.068 Sum_probs=175.5
Q ss_pred HHHHHHHHhhhhhCC--c-hHHHHHHHHHHHHHHHhcC--cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhc
Q 008533 91 QQYIKSELLPCLGAA--D-RHIRSTVGTIVSVVVQLGG--IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQV 165 (562)
Q Consensus 91 ~~~i~~~ll~~l~~~--~-~~vr~~~~~~i~~i~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~ 165 (562)
+..+.+. ...+.++ + .+.|.....++..+...+. ......++..+.+++++++...|+.....+..+.+. ++
T Consensus 24 k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~- 100 (355)
T 3tjz_B 24 KSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AE- 100 (355)
T ss_dssp HHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SS-
T ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HH-
Confidence 3333333 4677764 3 4556678888888877642 234678899999999999998888887777666665 11
Q ss_pred ccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHH
Q 008533 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAF 245 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L 245 (562)
..+ -+...|.+-++++++-+|-.|+++++.+.. + ..++.+.+.+.+.+.+.++-+|+.|+-+.
T Consensus 101 ----------e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~----~m~~~l~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 101 ----------DVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--S----TMLQAIERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp ----------CGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--T----TTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ----------HHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--H----HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 122 567778999999999999999999999865 1 12445566677778899999999999999
Q ss_pred HHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhh
Q 008533 246 NLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVE 325 (562)
Q Consensus 246 ~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~ 325 (562)
..+....|+.+..++. -+.....+.++.|...|+..+..+.+. . +..+.++++.+...-
T Consensus 164 ~kL~~~~pe~v~~~~~----~l~~ll~d~n~~V~~~Al~lL~ei~~~--d----~~a~~kLv~~l~~~~----------- 222 (355)
T 3tjz_B 164 LHLLKCSFDVVKRWVN----EAQEAASSDNIMVQYHALGLLYHVRKN--D----RLAVSKMISKFTRHG----------- 222 (355)
T ss_dssp HHHTTTCHHHHHTTHH----HHHHHTTCSSHHHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHSSC-----------
T ss_pred HHHhccCHHHHHHHHH----HHHHHhcCCCccHHHHHHHHHHHHHhh--c----hHHHHHHHHHHhcCC-----------
Confidence 9998888887655443 344456788888988999888888764 1 113334444432110
Q ss_pred hhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc---chhhhhHHHHHHHHcCCC
Q 008533 326 AEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD---EILPTLMPVIQAKLSASG 402 (562)
Q Consensus 326 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~~l~~~l~~~~ 402 (562)
+ ...|.. ...+..+.....+ .....+++.+.+.+++.+
T Consensus 223 -------------l----------------------~~~~~q----~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~ 263 (355)
T 3tjz_B 223 -------------L----------------------KSPFAY----CMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKH 263 (355)
T ss_dssp -------------C----------------------SCHHHH----HHHHHHHTCC-----------------CCCCCSS
T ss_pred -------------C----------------------cChHHH----HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCC
Confidence 0 001221 1233333222211 223567777877888776
Q ss_pred CCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHH
Q 008533 403 DEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 403 ~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~ 482 (562)
..+...|+.++..+...... .+...++.+...+.++++.+|..|+..|..+....| ..+...-.
T Consensus 264 ---~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P---------~~v~~~n~ 327 (355)
T 3tjz_B 264 ---EMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP---------SAVTACNL 327 (355)
T ss_dssp ---HHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------
T ss_pred ---hHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc---------HHHHHHHH
Confidence 88899988888776542211 122234445555678899999999999999888644 33445556
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 008533 483 GLLKRILDTNKRVQEAACSAF 503 (562)
Q Consensus 483 ~l~~~l~d~~~~vr~~a~~al 503 (562)
.+..+++|+|..++..|..+|
T Consensus 328 ~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 328 DLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ---------------------
T ss_pred HHHHHccCCcHhHHHHHHHHh
Confidence 677788888777766555544
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.86 E-value=3.8e-06 Score=88.50 Aligned_cols=311 Identities=15% Similarity=0.084 Sum_probs=188.6
Q ss_pred HHHHHHHHHhc---cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCC--------HHHHHH
Q 008533 131 ELLQALVTCLD---SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPH--------TSLRKL 199 (562)
Q Consensus 131 ~ll~~l~~~l~---~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--------~~vr~~ 199 (562)
+-+..|...+. ++++.++.+|+..|+-+...... ..+..|...+.+.+ +.+|..
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------------~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------------DTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------------HHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------------HHHHHHHHHHcCccccccccccHHHHHH
Confidence 44666666665 56778899999999988765442 23455555555433 568888
Q ss_pred HHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHH
Q 008533 200 SLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVA 279 (562)
Q Consensus 200 al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~ 279 (562)
|+-.++-...... -+.+++.|...+.+.+..++..+.-+|+.+.-.... ...+..++..+. .+.++++|
T Consensus 457 AaLGLGla~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn--~~ai~~LL~~~~---e~~~e~vr 525 (963)
T 4ady_A 457 ASLGIGLAAMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK--PEAIHDMFTYSQ---ETQHGNIT 525 (963)
T ss_dssp HHHHHHHHSTTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHH---HCSCHHHH
T ss_pred HHHHHHHHhcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC--HHHHHHHHHHHh---ccCcHHHH
Confidence 8777776432211 022344444444444555665666666654221111 133445555444 34566788
Q ss_pred HHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCc
Q 008533 280 LEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDD 359 (562)
Q Consensus 280 ~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 359 (562)
..+...++-+.-. ..+ ..+.++..+.. +
T Consensus 526 R~aalgLGll~~g--~~e----~~~~li~~L~~---------------------------------------~------- 553 (963)
T 4ady_A 526 RGLAVGLALINYG--RQE----LADDLITKMLA---------------------------------------S------- 553 (963)
T ss_dssp HHHHHHHHHHTTT--CGG----GGHHHHHHHHH---------------------------------------C-------
T ss_pred HHHHHHHHhhhCC--ChH----HHHHHHHHHHh---------------------------------------C-------
Confidence 8777767655332 111 12233333210 0
Q ss_pred cccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHH
Q 008533 360 DIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFL 438 (562)
Q Consensus 360 d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l 438 (562)
..+.+|..+.-+++.-....|+ ..+.. .+..+.++.+ ..+|.+|+.+||.+.-+-.+ .++.+
T Consensus 554 ---~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~~d~~---d~VRraAViaLGlI~~g~~e--------~v~rl 616 (963)
T 4ady_A 554 ---DESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAVSDSN---DDVRRAAVIALGFVLLRDYT--------TVPRI 616 (963)
T ss_dssp ---SCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHHHCSC---HHHHHHHHHHHHHHTSSSCS--------SHHHH
T ss_pred ---CCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhccCCc---HHHHHHHHHHHHhhccCCHH--------HHHHH
Confidence 0135677666666544444454 22222 3334445666 78999999999998766432 24445
Q ss_pred hhhc-CCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc
Q 008533 439 IPLL-DDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR 517 (562)
Q Consensus 439 ~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~ 517 (562)
+..+ ++.+|.||.+|++++|.++..-+ ...++..|....+|++..||..|+.+|+.+.....+...|.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~-----------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKG-----------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSC-----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCC-----------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 5544 46789999999999998875321 15677777788899999999999999998887777777889
Q ss_pred HHHHHHHHHHHHhhhh-h-hHHHHHHHHHHHH
Q 008533 518 LEIILQHLMMAFGKYQ-R-RNLRIVYDAIGTL 547 (562)
Q Consensus 518 l~~il~~L~~~l~~~~-~-~~~~~~~~~l~~l 547 (562)
+..+++.|.+...+.. + ..+-.+.-+.|.+
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 9999999999887532 2 2233444444443
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.85 E-value=1.2e-05 Score=84.67 Aligned_cols=308 Identities=15% Similarity=0.112 Sum_probs=194.3
Q ss_pred HHHhhhhh---CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCC--------hhHHhHHHHHHHHHhhcchh
Q 008533 96 SELLPCLG---AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSND--------INHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 96 ~~ll~~l~---~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~--------~~~~~~al~~l~~i~~~~~~ 164 (562)
..|-+.|. +.++.+|..++.++|.+..... .+.+..|...+.+++ +.+|.+|...|+.+.-....
T Consensus 395 ~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ 470 (963)
T 4ady_A 395 KVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN 470 (963)
T ss_dssp HHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC
Confidence 34445554 4678999999999998876432 246677777776554 67888998888876543221
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh-hchhhHHhchHHHHHHHhhhccCCCHHHHHHHHH
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM-LMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (562)
.++++.|...+.+.+..++..|.-+++.+.. ... .+.+..++..+. .+.++.+|+.+..
T Consensus 471 --------------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn---~~ai~~LL~~~~---e~~~e~vrR~aal 530 (963)
T 4ady_A 471 --------------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK---PEAIHDMFTYSQ---ETQHGNITRGLAV 530 (963)
T ss_dssp --------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHH---HCSCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC---HHHHHHHHHHHh---ccCcHHHHHHHHH
Confidence 4567778888887777778777777776533 221 112233344333 2446789998888
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHH-hhccccchhhHHhhhhHHHHHHHhhcccChhhHh
Q 008533 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHS-YFEAQLPHENLKEFLPRLVPVLLSNMIYADDDES 322 (562)
Q Consensus 244 ~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~-~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~ 322 (562)
.|+.+.-..++.. +.++..+. .+.++.+|..+.-.++- ++.. .... .++.++..+..
T Consensus 531 gLGll~~g~~e~~----~~li~~L~---~~~dp~vRygaa~alglAyaGT-Gn~~----aIq~LL~~~~~---------- 588 (963)
T 4ady_A 531 GLALINYGRQELA----DDLITKML---ASDESLLRYGGAFTIALAYAGT-GNNS----AVKRLLHVAVS---------- 588 (963)
T ss_dssp HHHHHTTTCGGGG----HHHHHHHH---HCSCHHHHHHHHHHHHHHTTTS-CCHH----HHHHHHHHHHH----------
T ss_pred HHHhhhCCChHHH----HHHHHHHH---hCCCHHHHHHHHHHHHHHhcCC-CCHH----HHHHHHHHhcc----------
Confidence 8887755554443 34444332 34667778777655543 3332 1112 22333333321
Q ss_pred hhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHH-HHcCC
Q 008533 323 LVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQA-KLSAS 401 (562)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~-~l~~~ 401 (562)
| .+ + .+|+.|..+|+.+...-+ + ..+.+.. ...+.
T Consensus 589 -----------------------------d----~~-d-----~VRraAViaLGlI~~g~~-e----~v~rlv~~L~~~~ 624 (963)
T 4ady_A 589 -----------------------------D----SN-D-----DVRRAAVIALGFVLLRDY-T----TVPRIVQLLSKSH 624 (963)
T ss_dssp -----------------------------C----SC-H-----HHHHHHHHHHHHHTSSSC-S----SHHHHTTTGGGCS
T ss_pred -----------------------------C----Cc-H-----HHHHHHHHHHHhhccCCH-H----HHHHHHHHHHhcC
Confidence 0 00 0 378888777776643222 2 2233333 34456
Q ss_pred CCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHH
Q 008533 402 GDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVL 481 (562)
Q Consensus 402 ~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il 481 (562)
+ |.+|.++..++|.+..+.+. ..++..+.+...|++..||.+|+.++|.+...-.+ ...+.+.+++
T Consensus 625 d---~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-----a~~~rva~~l 690 (963)
T 4ady_A 625 N---AHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-----KLNPQVADIN 690 (963)
T ss_dssp C---HHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-----TTCTTHHHHH
T ss_pred C---HHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-----ccchHHHHHH
Confidence 6 99999999999999876542 33566677778999999999999999998864321 2245678888
Q ss_pred HHHHHHhcc--CCHHHHHHHHHHHHHHH
Q 008533 482 MGLLKRILD--TNKRVQEAACSAFATLE 507 (562)
Q Consensus 482 ~~l~~~l~d--~~~~vr~~a~~al~~l~ 507 (562)
..+.+...| .++..+..+..|.|-+.
T Consensus 691 ~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 691 KNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 888888875 35778888888877553
No 86
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.83 E-value=5.2e-07 Score=83.92 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=115.1
Q ss_pred cHhhhHHHHHHHHHhhhcc---chh-hhhHHHHHHHHcC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHh
Q 008533 366 NLRKCSAAALDVLSNVFGD---EIL-PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHLS-EIVAFLI 439 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~---~~~-~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~-~~~~~l~ 439 (562)
.+|..|..+++.++..-+. .++ ...+|.+.+++++ ++ ...|..|+++|+.++.+.......+.. ..+|.+.
T Consensus 97 ~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~---~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~ 173 (296)
T 1xqr_A 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC---DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLM 173 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCC---HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHH
Confidence 4788899999999875432 222 2567777788875 35 789999999999999887654444443 5788999
Q ss_pred hhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccc-----
Q 008533 440 PLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF--EKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAE----- 512 (562)
Q Consensus 440 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~----- 512 (562)
..|.++++.++..|+|+|++++..-++ ....+ ..+++.|+..|.++++.|+..|+.+|++++.....
T Consensus 174 ~lL~~~d~~v~~~A~~aLs~L~~~~~~------~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~ 247 (296)
T 1xqr_A 174 RAMQQQVQKLKVKSAFLLQNLLVGHPE------HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247 (296)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCChH------HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH
Confidence 999999999999999999999976322 22232 36889999999999999999999999999876421
Q ss_pred -cccccHHHHHHHHHHHHh
Q 008533 513 -ELAPRLEIILQHLMMAFG 530 (562)
Q Consensus 513 -~~~~~l~~il~~L~~~l~ 530 (562)
...+.+..+++.-...++
T Consensus 248 ~~~~~~l~~lL~~~~~~lq 266 (296)
T 1xqr_A 248 REPELGLEELLRHRCQLLQ 266 (296)
T ss_dssp HCGGGCHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHcc
Confidence 122345555655555555
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.72 E-value=2.5e-06 Score=81.65 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhhcC---------CChHHHHHHHHhhc--------cCCCHHHHHHHHHHHHHHHHHhhccCChhhHH--
Q 008533 32 DKSQIWQQLQQYSQF---------PDFNNYLAFILARA--------EGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-- 92 (562)
Q Consensus 32 ~r~~A~~~L~~~~~~---------~~~~~~l~~il~~~--------~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~-- 92 (562)
...+|...|.++..+ -+.++.|+.+|... ...++.+|..|+..|.|.-.. +++.+.
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~-----~~~~k~~i 122 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG-----DVANKATL 122 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSS-----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHH
Confidence 556777777776533 35677788888531 012467899999999887532 122232
Q ss_pred ----HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc---Cch--HHHHHHHHHHh-ccCChhHHhHHHHHHHHHhhcc
Q 008533 93 ----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---AGW--LELLQALVTCL-DSNDINHMEGAMDALSKICEDI 162 (562)
Q Consensus 93 ----~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~---~~w--~~ll~~l~~~l-~~~~~~~~~~al~~l~~i~~~~ 162 (562)
...+.|++.|.++++.++..++.++..++..+.. ... ...+|.|++.+ +++++..++.++.+|..++...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 2345777888889999999999999999874211 111 23578888864 5677889999999999988744
Q ss_pred hhcccccCCCCCcch-hHhhHHHHHHhhcCCCH----HHHHHHHHHHHHHHhh---chhhHHhch--HHHHHHHhhhccC
Q 008533 163 PQVLDSDVPGLAECP-INIFLPRLLQFFQSPHT----SLRKLSLGSVNQFIML---MPSALFVSM--DQYLQGLFLLSND 232 (562)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~il~~l~~~l~~~~~----~vr~~al~~l~~~~~~---~~~~~~~~~--~~~l~~l~~~~~~ 232 (562)
... ... -. ....+|.|.+.+.+.+. ++++.|+.++..+... .++. ...+ ...++.+..++.+
T Consensus 203 ~~n-k~~------i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~-~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 203 TEN-KAD------ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH-RQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp HHH-HHH------HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHTTTHHHHHHHHTTC
T ss_pred hhh-hHH------HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH-HHHHHHcCCHHHHHHHHcC
Confidence 321 000 01 25688999999987654 5899999999888752 2321 1111 1346777788888
Q ss_pred CCHHHHHHHHHHHHHHHhhCccchhhhHH-HHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 233 PSAEVRKLVCAAFNLLIEVRPSFLEPHLR-NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 233 ~~~~~~~~~~~~L~~l~~~~~~~~~~~l~-~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.+..+++.++.+|..++...++......+ ..++.+...+.+.++.++..|...+..++..
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 88999999999999998544433222222 4678888888888999999999999998876
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.69 E-value=8.9e-07 Score=79.59 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc--ccchhhHHhh-hhHHHH
Q 008533 232 DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA--QLPHENLKEF-LPRLVP 308 (562)
Q Consensus 232 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~--~~~~~~~~~~-l~~l~~ 308 (562)
+.|..-+.++++.|...++..++.+...++-++..+.-.+.+.+..+...+++++..+... ...+. +.++ ...++|
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~-~~~~ea~~~lP 135 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP-MSQEEVSAFVP 135 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC-CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 3467788888999988887777666677777777765555677888999999998887553 10111 2222 356677
Q ss_pred HHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhh
Q 008533 309 VLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILP 388 (562)
Q Consensus 309 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 388 (562)
.++..+-.+. -.+|..+...+..+...++. .
T Consensus 136 ~LveKlGd~k----------------------------------------------~~vR~~~r~il~~l~~v~~~---~ 166 (266)
T 2of3_A 136 YLLLKTGEAK----------------------------------------------DNMRTSVRDIVNVLSDVVGP---L 166 (266)
T ss_dssp HHHHGGGCSS----------------------------------------------HHHHHHHHHHHHHHHHHHCH---H
T ss_pred HHHHHhCCCh----------------------------------------------HHHHHHHHHHHHHHHHHCCH---H
Confidence 7765543111 15889999999888887763 2
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHH---HHHhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIV---AFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
.+++++.+.+.+.+ |+.|.+++..++.+.+..+-. + ...+ |.+.+.+.|++..||.+|+.++..+-...+
T Consensus 167 ~v~~~l~~g~ksKN---~R~R~e~l~~l~~li~~~G~~--~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 167 KMTPMLLDALKSKN---ARQRSECLLVIEYYITNAGIS--P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHHHHHHGGGCSC---HHHHHHHHHHHHHHHHHHCSG--G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCC---HHHHHHHHHHHHHHHHhcCCC--c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 57788888898888 999999999999998755422 1 2346 899999999999999999999998887765
Q ss_pred h
Q 008533 466 Q 466 (562)
Q Consensus 466 ~ 466 (562)
+
T Consensus 240 d 240 (266)
T 2of3_A 240 D 240 (266)
T ss_dssp T
T ss_pred H
Confidence 3
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.63 E-value=2.8e-06 Score=80.32 Aligned_cols=291 Identities=12% Similarity=-0.002 Sum_probs=153.7
Q ss_pred ccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 84 KSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 84 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
..++..+-..+.-.+++.+.+++..+|+..-..+-.+++. +.+ .--..+.+.+-++++++..|-.|+.+++.|...
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-- 134 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS-- 134 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--
Confidence 4466666667777888899999999999887777766655 222 224578888899999999999999999988552
Q ss_pred hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHH
Q 008533 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCA 243 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 243 (562)
..++.+.+.+.+++.|.++.||+.|+-|...++...|+... .+++.+..++.+.++.+...++.
T Consensus 135 ------------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~ 198 (355)
T 3tjz_B 135 ------------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASSDNIMVQYHALG 198 (355)
T ss_dssp ------------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcCCCccHHHHHHH
Confidence 24678899999999999999999999999998887766443 35667777778889999888888
Q ss_pred HHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhh
Q 008533 244 AFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESL 323 (562)
Q Consensus 244 ~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~ 323 (562)
.|..+.+.... .+..+++.+... ...++-....-+.++..++.. .. ...-..+++.+.+++..
T Consensus 199 lL~ei~~~d~~----a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~--d~---~~~~~~~~~~l~~~L~~------- 261 (355)
T 3tjz_B 199 LLYHVRKNDRL----AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLED--ED---GSRDSPLFDFIESCLRN------- 261 (355)
T ss_dssp HHHHHHTTCHH----HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC----------------------CCCCC-------
T ss_pred HHHHHHhhchH----HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhccc--cc---hhhHHHHHHHHHHHHcC-------
Confidence 88888765422 223333332221 011121111122222222211 00 00001122222111110
Q ss_pred hhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCC
Q 008533 324 VEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGD 403 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~ 403 (562)
.+..+-..|..++-.+.. .+...+....+.++..+.+++
T Consensus 262 ---------------------------------------~~~aVvyEa~k~I~~l~~-~~~~~~~~a~~~L~~fLss~d- 300 (355)
T 3tjz_B 262 ---------------------------------------KHEMVVYEAASAIVNLPG-CSAKELAPAVSVLQLFCSSPK- 300 (355)
T ss_dssp ---------------------------------------SSHHHHHHHHHHHTC------------CCCTHHHHHHSSS-
T ss_pred ---------------------------------------CChHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHcCCC-
Confidence 112455555666655544 223334445566777888888
Q ss_pred CCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 008533 404 EAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (562)
Q Consensus 404 ~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~ 458 (562)
...|.+|+..|..++...++.+.. .-.-+.+.+.|++..++.-|+.++-
T Consensus 301 --~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 301 --AALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp --SSSHHHHHHCC------------------------------------------
T ss_pred --chHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHHHHHhh
Confidence 899999999999998876654332 3445667788998888887766543
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.62 E-value=8.4e-07 Score=82.51 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=137.9
Q ss_pred cchhcHhhhHHHHHHHHHhhhcc-----c---hhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch------hhh
Q 008533 362 VNVWNLRKCSAAALDVLSNVFGD-----E---ILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI------KGL 427 (562)
Q Consensus 362 ~~~~~~r~~a~~~l~~l~~~~~~-----~---~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~------~~~ 427 (562)
+..|..|..|.+.+..+....+. . .+..+.+.+...+.+.+ ..+...++.++..++..+. ...
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN---~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN---VVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS---HHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 46899999998888777654322 1 13345677788888888 9999999999999987653 223
Q ss_pred hhhHHHHHHHHhhh-cCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Q 008533 428 YPHLSEIVAFLIPL-LDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATL 506 (562)
Q Consensus 428 ~~~l~~~~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l 506 (562)
..+...++|.++.- +.|..+.+|..|..++..++... .....+++.+...+++.+|.++..++.+|.++
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~----------~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD----------TSITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS----------SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc----------CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 45667788887764 88999999999998887777542 12345667777888889999999999999999
Q ss_pred HHHcccc---ccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 008533 507 EEEAAEE---LAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGFEL 555 (562)
Q Consensus 507 ~~~~~~~---~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ 555 (562)
+...+.. ..+.++.+++.+...+.+.+..++..+.++++.+...+|+..
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 9887432 345788899999999999999999999999999999998653
No 91
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.52 E-value=3.6e-06 Score=91.00 Aligned_cols=450 Identities=10% Similarity=-0.003 Sum_probs=218.9
Q ss_pred CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH---HhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHH
Q 008533 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLR---TAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQ 122 (562)
Q Consensus 46 ~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~---~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~ 122 (562)
+++++.-++..+..+...+..-+..-+.++|..+. +++.. .....+++.+-.++.+.+..-.+.+|++++-+..
T Consensus 461 ~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn~~~---~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~ 537 (997)
T 1vsy_5 461 TREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCE---LNMSDLFELCESYYNKDDKASMIMSVEIVAGLVC 537 (997)
T ss_dssp CHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTTTCC---CCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcccch---hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 37787777766654322222324445556666653 33333 2334455555556677788888899999999987
Q ss_pred hc--C-----cCchHHHHHHHHHHhc-cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHh----h-
Q 008533 123 LG--G-----IAGWLELLQALVTCLD-SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQF----F- 189 (562)
Q Consensus 123 ~~--~-----~~~w~~ll~~l~~~l~-~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----l- 189 (562)
.. . ...|.-+.|.|.+.+. +-+++....=..++..++...... ....++..++.. .
T Consensus 538 gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dpr-----------R~~~L~e~l~~~~~~l~~ 606 (997)
T 1vsy_5 538 GSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLR-----------RSKTFFCHFINADGMFDR 606 (997)
T ss_dssp CCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGG-----------GCHHHHHHHTCCCCCCCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChh-----------hhHHHHHHHHHhhcccCC
Confidence 63 1 1367788999999998 445554443334444444432211 123344433221 0
Q ss_pred cCCCH---HHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHH
Q 008533 190 QSPHT---SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEY 266 (562)
Q Consensus 190 ~~~~~---~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~ 266 (562)
++.+. .-|..-++.+..-..+- +. ....++..++ +.++...+|..+...|..+.......--+..+.++..
T Consensus 607 ~~~ssf~~~~rl~ll~~~l~~~~wr---~~-~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~~~~~l~~ 680 (997)
T 1vsy_5 607 ESDAATHQTSKIYMLRSILMSMEFR---AP-DVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEA 680 (997)
T ss_dssp CSSCCCCCCSSHHHHHHHHHHHTTS---SC-CCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCBSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhccc---cc-cHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHh
Confidence 11111 12233333222222221 11 1345565555 6677789999999998887766521101222233322
Q ss_pred HHhh-----c--CCCChhHHHHHhhhHHHhh---c---cccch----hhHHhhhhHHHHHHHhhcccChhhHhhhhhhhc
Q 008533 267 MLQV-----N--KDTDDDVALEACEFWHSYF---E---AQLPH----ENLKEFLPRLVPVLLSNMIYADDDESLVEAEED 329 (562)
Q Consensus 267 ~~~~-----~--~~~~~~v~~~a~~~l~~~~---~---~~~~~----~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~ 329 (562)
.... . ....+.+.....+.+..+. . ..... +........++.-+...+..... ......
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~-~~l~~~--- 756 (997)
T 1vsy_5 681 ERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNK-VLLVPY--- 756 (997)
T ss_dssp HHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGH-HHHHHH---
T ss_pred hccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCc-cchhhh---
Confidence 1110 0 0001111111111111111 0 00000 00000111111111111111000 000000
Q ss_pred cCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh-HHHHHHHHHhhh-ccchhhhhHHHHHHHHc-CCCCCCc
Q 008533 330 ESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-SAAALDVLSNVF-GDEILPTLMPVIQAKLS-ASGDEAW 406 (562)
Q Consensus 330 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~-a~~~l~~l~~~~-~~~~~~~l~~~l~~~l~-~~~~~~~ 406 (562)
-..++.|.+... .+. .|++ ..... +..++..++... +...++.++..+.+..+ +++ |
T Consensus 757 -----~~~~llP~ll~l-----~~~--~d~~-----eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s---W 816 (997)
T 1vsy_5 757 -----LVDYVLPFLIGL-----VKH--KDVC-----ALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS---N 816 (997)
T ss_dssp -----HTTTTTTTTCTT-----SSC--SHHH-----HHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS---S
T ss_pred -----hHHHHHHHHHHH-----hhc--CcHH-----HHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc---H
Confidence 000122222111 000 1110 12333 455677776543 33445555555544444 334 9
Q ss_pred hhHHHHHHHHHHHhhcchhhh-hhhHHHHHHHHhhhcCCCC-hhHHHHHHHHHHHhHHHH-hhhcCCCcchhhHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCIKGL-YPHLSEIVAFLIPLLDDKF-PLIRSISCWTLSRFSKFI-VQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~~~~-~~~l~~~~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~-~~~~~~~~~~~~~~~il~~ 483 (562)
.|.+++..+..+.-...=.+ ......+...+...|.|+. ..||..|..+|+.+.... + ......++..
T Consensus 817 -~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~--------~~~~~~li~~ 887 (997)
T 1vsy_5 817 -QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKE--------EQPLLSLIER 887 (997)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCS--------HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc--------hhhHHHHHHH
Confidence 99999887765543111001 1223568889999999999 999999999999987653 2 1112233333
Q ss_pred HHHHhcc------------CCHHHHHHHHHHHHHHHHHccccc--cccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 008533 484 LLKRILD------------TNKRVQEAACSAFATLEEEAAEEL--APRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 484 l~~~l~d------------~~~~vr~~a~~al~~l~~~~~~~~--~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~ 549 (562)
+.+.+.. .....|-.|.-.|+.++.+.+..+ -+++|+++..|.....+++ .....+=++++..-+
T Consensus 888 f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkr 966 (997)
T 1vsy_5 888 FAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKK 966 (997)
T ss_dssp HTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHH
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHh
Confidence 3332211 011456788889999999988776 6799999988887777643 244455555555433
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.50 E-value=3.3e-05 Score=69.43 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=139.7
Q ss_pred CCHhhHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHH-hhcCCChHH----HHHHHHhh-ccCCCHHHHHHHHH
Q 008533 9 PQEQGFNEICRLLEQQ---------ISPSSTADKSQIWQQLQQ-YSQFPDFNN----YLAFILAR-AEGKSVEIRQAAGL 73 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~---------~s~d~~~~r~~A~~~L~~-~~~~~~~~~----~l~~il~~-~~~~~~~~R~~a~~ 73 (562)
|.++..++|...+... .+.|-. .|.+|.+.|.+ +.+.|.-+. .++.++.- -.+.++.+-..+..
T Consensus 31 p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k-~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~ 109 (266)
T 2of3_A 31 PTDEHISQLQTLLGNQAKVSLMSQLFHKDFK-QHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLE 109 (266)
T ss_dssp CCHHHHHHHHHHHHTTBCHHHHHHHTCSCHH-HHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhcCCCHH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4445556666555544 555666 78889999887 444554322 23444330 11567888877877
Q ss_pred HHHHHHHH---hhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhH
Q 008533 74 LLKNNLRT---AYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEG 150 (562)
Q Consensus 74 ~lk~~i~~---~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~ 150 (562)
++...+.. .-..+.+.+...+.+.|+.-++++.+.||..+-.++..+....++ ..+++.+.+.+++.++.+|..
T Consensus 110 ~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e 186 (266)
T 2of3_A 110 LCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSE 186 (266)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHH
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHH
Confidence 77776643 223467777778889999999999999999999998888776432 346777888999999999999
Q ss_pred HHHHHHHHhhcchhcccccCCCCCcchhHhhH---HHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH
Q 008533 151 AMDALSKICEDIPQVLDSDVPGLAECPINIFL---PRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (562)
Q Consensus 151 al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il---~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (562)
++..++.+...++... ...+ |.+.+.+.|.+..||.+|+.|+..+....++.+.
T Consensus 187 ~l~~l~~li~~~G~~~------------~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 187 CLLVIEYYITNAGISP------------LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp HHHHHHHHHHHHCSGG------------GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhcCCCc------------cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999877541 2356 8999999999999999999999988776655443
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.47 E-value=1.5e-05 Score=68.39 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=146.5
Q ss_pred CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcC
Q 008533 46 FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGG 125 (562)
Q Consensus 46 ~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~ 125 (562)
.++.+..|.++|. +.++.++.-+...+.+.++..-..+.....+.+.+.++..+.+++..|.-.+..|+..+....+
T Consensus 31 ~e~~l~~L~~LL~---dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 31 DKRALFLILELAG---EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp CHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 4456677888775 7899999999999999998744445555667777888888889999999999999999998863
Q ss_pred --cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHH
Q 008533 126 --IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGS 203 (562)
Q Consensus 126 --~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~ 203 (562)
++.+..+...+...+.++++-.+.-+...++.+ . .. .....+...+..++.+.+..++.+++.+
T Consensus 108 L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-v~------------~~~~~V~~~l~sLl~Skd~~vK~agl~~ 173 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-PL------------EDSKLVRTYINELVVSPDLYTKVAGFCL 173 (265)
T ss_dssp BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-BS------------CCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-cc------------cchHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 478888999999999999998888888888877 1 11 1246678888888899999999999999
Q ss_pred HHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 008533 204 VNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
+..+..+..+ ...+..++..+-.++++.|+.++..++..+..+...
T Consensus 174 L~eia~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 174 FLNMLNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHHHGGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHhhcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 9998875431 112333444555566777999999999999887765
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.46 E-value=2.4e-06 Score=82.63 Aligned_cols=251 Identities=13% Similarity=0.116 Sum_probs=164.8
Q ss_pred CchH-HHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHH-----hhcC-----CCHH
Q 008533 127 AGWL-ELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQ-----FFQS-----PHTS 195 (562)
Q Consensus 127 ~~w~-~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~-----~l~~-----~~~~ 195 (562)
..|| ++...|..-+-+++|.+|++|...|+.+++..+...... ..... ++.-.++- -+.| ...-
T Consensus 169 ~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--~~~N~---DLAvRLLCVLALDRFGDYVSDqVVAP 243 (800)
T 3oc3_A 169 IENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--IRVDS---KLFSKIYEILVTDKFNDFVDDRTVAP 243 (800)
T ss_dssp CCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--CCCCT---THHHHHHHHHHHBCCBBCSSSSCBCH
T ss_pred CCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--ccccH---HHHHHHHHHHHhccccccccCeeeee
Confidence 3453 388888888999999999999999999999876432211 00011 23222222 2222 2346
Q ss_pred HHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCC
Q 008533 196 LRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTD 275 (562)
Q Consensus 196 vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~ 275 (562)
||+.|.++++.+ ..+|+. ..++..+......+..++|...+-.|.-+ .+.+.. ++.+++.++.++.|.+
T Consensus 244 VRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLVSLLSSPD 312 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHHhhcCCcc
Confidence 999999999999 777765 12345555555677899999988877766 333333 7889999999999999
Q ss_pred hhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCC
Q 008533 276 DDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPE 355 (562)
Q Consensus 276 ~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 355 (562)
++||..|.+.|.-++.. ..++.++..++.++... +| .
T Consensus 313 DDVRAVAAetLiPIA~p--------~~l~~LL~iLWd~L~~L-DD---------------------------------L- 349 (800)
T 3oc3_A 313 EDIKLLSAELLCHFPIT--------DSLDLVLEKCWKNIESE-EL---------------------------------I- 349 (800)
T ss_dssp HHHHHHHHHHHTTSCCS--------STHHHHHHHHHHHHHTC-CS---------------------------------C-
T ss_pred cHHHHHHHHHhhhhcch--------hhHHHHHHHHHHHhhhh-cc---------------------------------c-
Confidence 99999999999888821 23455666665544321 00 0
Q ss_pred CCCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHH
Q 008533 356 DDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEI 434 (562)
Q Consensus 356 ~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~ 434 (562)
..-....++.|..|+..-.. ...|.++|.+-..+.++- ..+|.+++.++..+. ...+
T Consensus 350 ---------SASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtI---TSVR~AVL~TL~tfL----------~~~~ 407 (800)
T 3oc3_A 350 ---------SVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPV---PEVRTSILNMVKNLS----------EESI 407 (800)
T ss_dssp ---------CTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSS---HHHHHHHHHHTTTCC----------CHHH
T ss_pred ---------chhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCc---HHHHHHHHHHHHHHH----------hhhH
Confidence 01123355666666654322 233466677777778887 899999999887776 2234
Q ss_pred HHHHhhh-cCCCChhHHHHHHHHHH
Q 008533 435 VAFLIPL-LDDKFPLIRSISCWTLS 458 (562)
Q Consensus 435 ~~~l~~~-l~d~~~~vr~~a~~~l~ 458 (562)
+..+++. +-+++..|+..+..+..
T Consensus 408 LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 408 DFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5544443 45788889988877764
No 95
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.45 E-value=0.00021 Score=61.36 Aligned_cols=221 Identities=12% Similarity=0.060 Sum_probs=162.1
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHh-chHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFV-SMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLE 257 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 257 (562)
+..+..+..++.+.++.++..++.++..++..+|+.+.. .+..+++.+...+.+.|+.+.-.+++||..+.+..|-. .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~-~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG-S 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC-H
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC-H
Confidence 446778899999999999999999999999987765543 45677888888889999999999999999999886644 2
Q ss_pred hhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCC
Q 008533 258 PHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQ 337 (562)
Q Consensus 258 ~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 337 (562)
+.+..+...+....+++++-.+.++.+.++.+ +...... .++..+...+. +.
T Consensus 111 ~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~-------~V~~~l~sLl~-Sk------------------- 162 (265)
T 3b2a_A 111 KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSK-------LVRTYINELVV-SP------------------- 162 (265)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCH-------HHHHHHHHHHT-CS-------------------
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchH-------HHHHHHHHHHh-CC-------------------
Confidence 34456777777778888888999999999988 2211122 22233322221 10
Q ss_pred CCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHH
Q 008533 338 DLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLAL 416 (562)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l 416 (562)
.-.+..+|..++..++..-++ .++..++.-+...+++.| ...++-|+.++
T Consensus 163 --------------------------d~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD---~~l~e~aLd~L 213 (265)
T 3b2a_A 163 --------------------------DLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDN---EFIVELALDVL 213 (265)
T ss_dssp --------------------------SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSC---HHHHHHHHHHH
T ss_pred --------------------------ChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHH
Confidence 013667788888888887766 777888888999999998 99999999999
Q ss_pred HHHhhcc-hhhhhhhHHHHHHHHhhhc-CCCChhHHHHHHHHH
Q 008533 417 GAIAEGC-IKGLYPHLSEIVAFLIPLL-DDKFPLIRSISCWTL 457 (562)
Q Consensus 417 ~~i~~~~-~~~~~~~l~~~~~~l~~~l-~d~~~~vr~~a~~~l 457 (562)
-.+.... .+.+.+.+..+...+-+.. ....|.+|..|-.+.
T Consensus 214 e~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~ 256 (265)
T 3b2a_A 214 EKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVS 256 (265)
T ss_dssp HHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred HHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence 9888653 3444445555555555554 466788888875443
No 96
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.43 E-value=4.1e-08 Score=79.80 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=83.0
Q ss_pred hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 387 LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 387 ~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
.+...+.+...+++++ |.+|..|+.+|+.+... . ++.+...+.|+++.||..|++++|++..
T Consensus 10 ~~~~~~~l~~~L~~~~---~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADEN---KWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp -----------CCSSC---CCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred ccccHHHHHHHhcCCC---HHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 3456677788888888 99999998888765421 1 3677788889999999999999998753
Q ss_pred hcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 008533 467 DIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (562)
Q Consensus 467 ~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~ 546 (562)
+..++.+...++|+++.||..|+++|+.+-. +..++.|...+.+.+..++..+..+|+.
T Consensus 72 -----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1345666777788899999999999997742 4556677777776666666677777753
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.41 E-value=5.1e-06 Score=77.18 Aligned_cols=186 Identities=11% Similarity=0.068 Sum_probs=138.1
Q ss_pred hhhhCCchHHHHHHHHHHHHHHHhcCc--------CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 100 PCLGAADRHIRSTVGTIVSVVVQLGGI--------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 100 ~~l~~~~~~vr~~~~~~i~~i~~~~~~--------~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
+-|.+.++..|..+...+..++..... ..|..+.+.+.+.+.+.+..+...++.++..++...+......
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~-- 93 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN-- 93 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH--
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc--
Confidence 467889999999999988888765321 1244566778888899999999999999999998765432110
Q ss_pred CCCcchhHhhHHHHHH-hhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 008533 172 GLAECPINIFLPRLLQ-FFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~-~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~ 250 (562)
..+......++|.++. ++.+....+|..|+.++..++.... ....+++.+...+++.++.++..++..|..++.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 0001345667887775 5889999999999999988876431 123446777777888899999999999999888
Q ss_pred hCccc---hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 251 VRPSF---LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 251 ~~~~~---~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.++.. ..+.++.+++.+...+.+.+++||..|.+++..+...
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 75432 2345667777777888999999999999999887654
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.27 E-value=3.2e-05 Score=75.05 Aligned_cols=204 Identities=11% Similarity=0.088 Sum_probs=124.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhc------cCChhhHHHHHHHHhh-----hhhC-----CchHHHHHHHHHHHHHHHhc
Q 008533 61 EGKSVEIRQAAGLLLKNNLRTAYK------SMSPSNQQYIKSELLP-----CLGA-----ADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 61 ~~~~~~~R~~a~~~lk~~i~~~w~------~l~~~~~~~i~~~ll~-----~l~~-----~~~~vr~~~~~~i~~i~~~~ 124 (562)
-+...++|+-||..|+..++.+-. ..+. .+--+++- -++| .-..||..+|+++|.+ ...
T Consensus 184 Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hL 258 (800)
T 3oc3_A 184 LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPL 258 (800)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTT
T ss_pred cCcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhC
Confidence 378999999999999999977521 1222 22222222 2222 2467999999999999 655
Q ss_pred CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHH
Q 008533 125 GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSV 204 (562)
Q Consensus 125 ~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l 204 (562)
+.+ -.++..++..+..+.|.+|++||..|.++ .+.+. .+..+++.++.+|+|.+.+||..|..++
T Consensus 259 p~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~---------~Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 259 IGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVE---------DKDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp SCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCC---------CHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred Chh--HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHH---------HHHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 444 24444444555778899999999999988 21111 1688999999999999999999999998
Q ss_pred HHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhh
Q 008533 205 NQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACE 284 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~ 284 (562)
..++ .|+.+...+..++..+... .| -......++..|..++......- ..+.++|-++..+.+.-.+||..++.
T Consensus 324 iPIA--~p~~l~~LL~iLWd~L~~L-DD-LSASTgSVMdLLAkL~s~p~~a~--~dp~LVPRL~PFLRHtITSVR~AVL~ 397 (800)
T 3oc3_A 324 CHFP--ITDSLDLVLEKCWKNIESE-EL-ISVSKTSNLSLLTKIYRENPELS--IPPERLKDIFPCFTSPVPEVRTSILN 397 (800)
T ss_dssp TTSC--CSSTHHHHHHHHHHHHHTC-CS-CCTTHHHHHHHHHHHHHHCTTCC--CCSGGGGGTGGGGTCSSHHHHHHHHH
T ss_pred hhhc--chhhHHHHHHHHHHHhhhh-cc-cchhhHHHHHHHHHHHcCCcccc--cChHHHHHHHhhhcCCcHHHHHHHHH
Confidence 8776 3333333333334444333 11 12223445555555555432210 01144444444555555666666665
Q ss_pred hHHHhh
Q 008533 285 FWHSYF 290 (562)
Q Consensus 285 ~l~~~~ 290 (562)
.+.++.
T Consensus 398 TL~tfL 403 (800)
T 3oc3_A 398 MVKNLS 403 (800)
T ss_dssp HTTTCC
T ss_pred HHHHHH
Confidence 555543
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.21 E-value=1.9e-06 Score=69.78 Aligned_cols=104 Identities=26% Similarity=0.347 Sum_probs=78.6
Q ss_pred cHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC
Q 008533 366 NLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK 445 (562)
Q Consensus 366 ~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~ 445 (562)
.+|..|..+|..+ ++. . ++.+.+.+++++ |.+|..|+.+|+.+.. +..++.+...+.|+
T Consensus 27 ~vR~~A~~~L~~~----~~~---~-~~~L~~~L~d~~---~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~ 85 (131)
T 1te4_A 27 WVRRDVSTALSRM----GDE---A-FEPLLESLSNED---WRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDD 85 (131)
T ss_dssp CSSSSCCSSTTSC----SST---T-HHHHHHGGGCSC---HHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh----Cch---H-HHHHHHHHcCCC---HHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCC
Confidence 4566655555432 332 2 377788888888 9999999999998763 23467777778899
Q ss_pred ChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 008533 446 FPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (562)
Q Consensus 446 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~ 505 (562)
++.||..|+++++++.. +..++.|...++|+++.||..|+.+|+.
T Consensus 86 ~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 86 SGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999998752 2346677778889999999999999864
No 100
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.13 E-value=0.0025 Score=64.15 Aligned_cols=319 Identities=13% Similarity=0.131 Sum_probs=182.2
Q ss_pred HHHhhhhhC-CchHHHHHHHHHHHHHHHhcCcCch-HHHHHHHHHHhcc--CChhHHhHHHHHHHHHhhcchhccc----
Q 008533 96 SELLPCLGA-ADRHIRSTVGTIVSVVVQLGGIAGW-LELLQALVTCLDS--NDINHMEGAMDALSKICEDIPQVLD---- 167 (562)
Q Consensus 96 ~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~~~w-~~ll~~l~~~l~~--~~~~~~~~al~~l~~i~~~~~~~~~---- 167 (562)
+.|...+.+ .-..-|+.|...+..+++.. +... ..=++.|+..++. .|.+....++.+|..++..-+..-.
T Consensus 24 ~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~ 102 (651)
T 3grl_A 24 QKLCDRVASSTLLDDRRNAVRALKSLSKKY-RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENS 102 (651)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHh-HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccc
Confidence 445554543 45667888888888887543 2222 2236777777765 3677888888888776654332100
Q ss_pred ccCCC-C---C-cc--hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchH---HHHHHHhhhccCCCHHH
Q 008533 168 SDVPG-L---A-EC--PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMD---QYLQGLFLLSNDPSAEV 237 (562)
Q Consensus 168 ~~~~~-~---~-~~--~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~~ 237 (562)
+.... + + +. .-.+-++.++.++++.+..+|..+++++..++..-|+...+.+- .-++.+...+.+..+.+
T Consensus 103 ~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~i 182 (651)
T 3grl_A 103 TRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVI 182 (651)
T ss_dssp -----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHH
T ss_pred cccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHH
Confidence 00000 0 0 00 01345788899999999999999999999999877765444322 34778888888888999
Q ss_pred HHHHHHHHHHHHhhCccc-----hhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcccc-chhhHHh--hhhHHHHH
Q 008533 238 RKLVCAAFNLLIEVRPSF-----LEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQL-PHENLKE--FLPRLVPV 309 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~~~-----~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~--~l~~l~~~ 309 (562)
|..++-.|..++...++. |..-++.++.++-.--......+..-++.++..+.+... ....+++ +++.+.
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~-- 260 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMK-- 260 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGG--
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHH--
Confidence 999999999999876553 122234444443322112234567778888888877521 1222221 222221
Q ss_pred HHhhcccChhhHhhhhhhhccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhh-----HHHHHHHHHhhhcc
Q 008533 310 LLSNMIYADDDESLVEAEEDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKC-----SAAALDVLSNVFGD 384 (562)
Q Consensus 310 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~-----a~~~l~~l~~~~~~ 384 (562)
+.+...+ +...|+-.+. +..++..+...-+.
T Consensus 261 --~LL~~~~------------------------------------------~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~ 296 (651)
T 3grl_A 261 --PWFEVGD------------------------------------------ENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296 (651)
T ss_dssp --GGGCCCS------------------------------------------CSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred --HHhCCCc------------------------------------------cccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 1111100 0123543322 12223333221110
Q ss_pred ---------ch-hhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh---hhhhh-------HHHHHHHHhhhcCC
Q 008533 385 ---------EI-LPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK---GLYPH-------LSEIVAFLIPLLDD 444 (562)
Q Consensus 385 ---------~~-~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~---~~~~~-------l~~~~~~l~~~l~d 444 (562)
.+ -..+++.+.+.+.++. ..-..|..|+.+++.++.+... .+... .+.++..++..+++
T Consensus 297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~-~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~ 375 (651)
T 3grl_A 297 PGATSSCQKAMFQCGLLQQLCTILMATG-VPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNE 375 (651)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHccCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence 00 1234555666655542 2267889999999999988753 22111 12345555566665
Q ss_pred C-ChhHHHHHHHHHHHhHH
Q 008533 445 K-FPLIRSISCWTLSRFSK 462 (562)
Q Consensus 445 ~-~~~vr~~a~~~l~~l~~ 462 (562)
. ...+|.+|+.++..+..
T Consensus 376 ~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 376 RQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp TSCHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 4 47789999999998874
No 101
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.09 E-value=0.0064 Score=58.44 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
..+...+++|+..+-+++++ . |+..+.-.+.++.++.+.+..||..+...+..+++. +..+.+...|.++++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~----F-P~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLq 110 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKH----F-PELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQ 110 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGG----C-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhh----C-hhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHh
Confidence 44677888888755555443 2 233444445677777778888888887777777754 345777778888888
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIML 210 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~ 210 (562)
.+++..+...=.+|..+.+.-+. ..+..++.-+..++..+|..+++.+..-+..
T Consensus 111 tdd~~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 111 TDDSAEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred ccchHHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 77766555555555555554332 1222222222223567777777766554443
No 102
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.04 E-value=0.0056 Score=61.69 Aligned_cols=155 Identities=12% Similarity=0.074 Sum_probs=116.0
Q ss_pred CchHHHHHHHHHHhccC-ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC--CCHHHHHHHHHH
Q 008533 127 AGWLELLQALVTCLDSN-DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHTSLRKLSLGS 203 (562)
Q Consensus 127 ~~w~~ll~~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~vr~~al~~ 203 (562)
..-.+.++.|...+++. -..-|+.|+..|..+.+.++..+ ...-++.++..|++ .+.++-+.++++
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~V-----------g~~~l~~li~~L~~d~~D~e~v~~~Let 85 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEV-----------GIQAMEHLIHVLQTDRSDSEIIGYALDT 85 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHH-----------HHHTHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHh-----------hhhhHHHHHHHHhcccccHHHHHHHHHH
Confidence 45567888888888764 57889999999999988776543 34558888888876 477888889999
Q ss_pred HHHHHhhchh------------hHHh-ch------HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHH---
Q 008533 204 VNQFIMLMPS------------ALFV-SM------DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLR--- 261 (562)
Q Consensus 204 l~~~~~~~~~------------~~~~-~~------~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~--- 261 (562)
+..+....++ .+.. +. +.-+..++.+++..+..+|..++++|..++...++.....+-
T Consensus 86 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p 165 (651)
T 3grl_A 86 LYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP 165 (651)
T ss_dssp HHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST
T ss_pred HHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc
Confidence 9877653221 0100 11 123566777888889999999999999999998886655543
Q ss_pred HHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 262 NLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 262 ~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
.=++.++..+.|..+.+|-.++-++..+++.
T Consensus 166 ~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 166 MGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp THHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 3567777888998899999999999999886
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.67 E-value=0.0027 Score=68.86 Aligned_cols=377 Identities=12% Similarity=0.084 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHHHHHHHHH--HhhccCC-hhhHHHHHHHHhhhhh-CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLR--TAYKSMS-PSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALV 137 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~--~~w~~l~-~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~ 137 (562)
+.+..-..+||.++--.+. ++|+.-. ...-+.+.+.|-+++. +-++.....-..++..+...--+...+.++..|.
T Consensus 519 ~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~ 598 (997)
T 1vsy_5 519 KDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFI 598 (997)
T ss_dssp SSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHH
Confidence 4455555567776666663 5775422 1233466666777777 4566666667888888887644555556777663
Q ss_pred HH----h-ccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc-
Q 008533 138 TC----L-DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM- 211 (562)
Q Consensus 138 ~~----l-~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~- 211 (562)
.. . ++++.-.....+..|..+....+..+. ....++..++ +.++...||...-+.+..+....
T Consensus 599 ~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~---------~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~ 667 (997)
T 1vsy_5 599 NADGMFDRESDAATHQTSKIYMLRSILMSMEFRAP---------DVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQS 667 (997)
T ss_dssp CCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSC---------CCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccc---------cHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhc
Confidence 31 1 122222223345566666665555432 1345555555 78888999999998888776643
Q ss_pred -hh---------------------------hHHhchHHHHHHHhhhcc---C--CCH---HHHHHHHHHHHH-HHhhCcc
Q 008533 212 -PS---------------------------ALFVSMDQYLQGLFLLSN---D--PSA---EVRKLVCAAFNL-LIEVRPS 254 (562)
Q Consensus 212 -~~---------------------------~~~~~~~~~l~~l~~~~~---~--~~~---~~~~~~~~~L~~-l~~~~~~ 254 (562)
|. .+...+..+++.+-.... . +.+ .-....++.+.. +......
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~ 747 (997)
T 1vsy_5 668 NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARG 747 (997)
T ss_dssp CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSG
T ss_pred ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcC
Confidence 10 000011111122211111 0 000 111112222222 2222111
Q ss_pred ----chhhhHHH-HHHHHHhhcCCCCh-hHHHH-HhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhh
Q 008533 255 ----FLEPHLRN-LFEYMLQVNKDTDD-DVALE-ACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAE 327 (562)
Q Consensus 255 ----~~~~~l~~-i~~~~~~~~~~~~~-~v~~~-a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~ 327 (562)
.+.+++.. ++|.++......++ ++... |..++..++...-. .++++.++..+...+
T Consensus 748 ~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~----~~~~~~~l~~l~~~~------------- 810 (997)
T 1vsy_5 748 PNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR----KNHVAAIVDYVCSSN------------- 810 (997)
T ss_dssp GGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC----HHHHHHHHHHSSCTT-------------
T ss_pred CCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHH-------------
Confidence 13344444 55555555444433 33333 33334444332111 112222222211000
Q ss_pred hccCCCCCCCCCCcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhh----hccchhhhhHHHHHHHHcCCCC
Q 008533 328 EDESLPDRDQDLKPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNV----FGDEILPTLMPVIQAKLSASGD 403 (562)
Q Consensus 328 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~----~~~~~~~~l~~~l~~~l~~~~~ 403 (562)
..+..| .|.++...+..+... +.......+...+..++.++.-
T Consensus 811 --------------------------------~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~ 857 (997)
T 1vsy_5 811 --------------------------------VALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQF 857 (997)
T ss_dssp --------------------------------TTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSC
T ss_pred --------------------------------hcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCcc
Confidence 012368 888888877666542 1333335677777777765431
Q ss_pred CCchhHHHHHHHHHHHhhcc-h-hhhhhhHHHHHHHHhhhcCC------------CChhHHHHHHHHHHHhHHHHhhhcC
Q 008533 404 EAWKDREAAVLALGAIAEGC-I-KGLYPHLSEIVAFLIPLLDD------------KFPLIRSISCWTLSRFSKFIVQDIG 469 (562)
Q Consensus 404 ~~~~~r~aal~~l~~i~~~~-~-~~~~~~l~~~~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~~ 469 (562)
..+|+.|..+|+.+..+. . .. ...++..+...+.. .....|.+|+..||.+...+|..+.
T Consensus 858 --~EVRe~Aa~tLsgll~c~~~~~~----~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP 931 (997)
T 1vsy_5 858 --VEVRVRAASILSDIVHNWKEEQP----LLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFP 931 (997)
T ss_dssp --HHHHHHHHHHHHHHHHSCCSHHH----HHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSS
T ss_pred --HHHHHHHHHHHHHHHHcCCchhh----HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 569999999999998765 3 22 22334444444321 1126788999999999988764310
Q ss_pred CCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 470 HQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 470 ~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
..+++++++..|.....++ ..|+..+-.+|+.|-+.
T Consensus 932 ---~P~w~P~~l~~La~~~~~~-~~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 932 ---LPPWIPKNLSNLSSWARTS-GMTGNAAKNTISEFKKV 967 (997)
T ss_dssp ---CCTHHHHHHHHHHTTSSSC-SSHHHHTHHHHHHHHHH
T ss_pred ---CCcccHHHHHHHHHHhCCC-CchHHHHHHHHHHHHhc
Confidence 2679999999888888885 45999999999998754
No 104
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.65 E-value=0.0033 Score=54.60 Aligned_cols=157 Identities=11% Similarity=0.123 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhh-hhhCCchHHH
Q 008533 32 DKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLP-CLGAADRHIR 110 (562)
Q Consensus 32 ~r~~A~~~L~~~~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~-~l~~~~~~vr 110 (562)
+-+.|...+..+. .+.+..+..-|.+ +...++|..|+-++... . . .+ .+.+.+.. .-.+++..||
T Consensus 56 ~~~~a~~~~~~~~--~~~~~~la~~L~~--~~~deVR~~Av~lLg~~-~----~-~~----~~L~~ir~~va~D~~WrVr 121 (240)
T 3l9t_A 56 EEQRALTDYKSND--GEYIKKLAFLAYQ--SDVYQVRMYAVFLFGYL-S----K-DK----EILIFMRDEVSKDNNWRVQ 121 (240)
T ss_dssp HHHHHHHHHHHSC--HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHT-T----T-SH----HHHHHHHHTGGGCSCHHHH
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHh--CcchHHHHHHHHHHHhc-c----C-cH----HHHHHHHHHhCCCCCccHH
Confidence 4455554444442 2344456666665 66689999998866655 1 1 12 23334444 3457899999
Q ss_pred HHHHHHHHHHHH-hcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhh
Q 008533 111 STVGTIVSVVVQ-LGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFF 189 (562)
Q Consensus 111 ~~~~~~i~~i~~-~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l 189 (562)
..++.+++.++. .++.. .++.+..+++++++.+|..++..+.-.+.. +. + ...-..++|.+....
T Consensus 122 e~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-~--------k~dp~~ll~iL~~L~ 187 (240)
T 3l9t_A 122 EVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-F--------KENPNEAIRRIADLK 187 (240)
T ss_dssp HHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-T--------TTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-h--------hcCHHHHHHHHHHhc
Confidence 999999999997 44332 667888999999999999998887543332 11 1 123567888888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhhchhhHH
Q 008533 190 QSPHTSLRKLSLGSVNQFIMLMPSALF 216 (562)
Q Consensus 190 ~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (562)
.|++.-||++.-..|..+....|+-+.
T Consensus 188 ~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 188 EDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 999999999999999999887765433
No 105
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.59 E-value=0.00027 Score=62.67 Aligned_cols=112 Identities=11% Similarity=-0.023 Sum_probs=82.4
Q ss_pred hhHHHHHHHHcCCCCCCc--hhHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHh
Q 008533 389 TLMPVIQAKLSASGDEAW--KDREAAVLALGAIAEGCIKGLYPHL-SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~--~~r~aal~~l~~i~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
..+|.+.+.+++++ . ..+..|..++..++.+..+...... ...+|.++..|.++++.++..|+|+|.+++..-.
T Consensus 8 ~~i~~lV~lL~s~~---~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 8 MTLERAVSMLEADH---MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCHHHHHHTCCSSC---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHhCCCC---chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 45677788888887 6 7777888888888865533222222 2367999999999999999999999999986322
Q ss_pred hhcCCCcchhhH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Q 008533 466 QDIGHQNGREQF--EKVLMGLLKRILD-TNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 466 ~~~~~~~~~~~~--~~il~~l~~~l~d-~~~~vr~~a~~al~~l~~~ 509 (562)
+ ....+ ...++.|++.|.+ .+..++..|+.+|.++...
T Consensus 85 ~------nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 85 D------NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp H------HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred H------HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 1 12222 3578888888874 6789999999999988743
No 106
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.52 E-value=0.002 Score=55.94 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=108.6
Q ss_pred HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHH-HhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 93 YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVT-CLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 93 ~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~-~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
.+......+..++...+|-.++..++.. . .-++.++.+.. ...++++.+|+.+-.+++.++.....
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p------- 137 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY------- 137 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH-------
Confidence 3443444455677889999999987776 2 23788999988 55678899999999999988862221
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 008533 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEV 251 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~ 251 (562)
+..++.+.....|++..||..|+.....+... + .+......+++.+-.+..|++.-+|+.+-..|..+.+.
T Consensus 138 -------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 -------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 23567788999999999999999887654432 2 23344455677777778888899999999999999999
Q ss_pred CccchhhhH
Q 008533 252 RPSFLEPHL 260 (562)
Q Consensus 252 ~~~~~~~~l 260 (562)
.|+.+..++
T Consensus 209 ~Pd~V~~~~ 217 (240)
T 3l9t_A 209 FPDLVKIEL 217 (240)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 888765544
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.37 E-value=0.2 Score=52.60 Aligned_cols=140 Identities=11% Similarity=0.071 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHH-----HHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCc---------C
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-----YIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------A 127 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~-----~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~---------~ 127 (562)
+.++..|..|+..+.+.+... ...+. .+...+-.+|.+++..||..++.++..++...+. +
T Consensus 45 S~~~~~r~~A~~al~~l~~~~-----~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQDA-----KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTTSH-----HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCc-----HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence 678899999999999987431 11112 2223334567889999999999999999876432 3
Q ss_pred chHHHHHHHHHHhc---cCC-------h-------hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhc
Q 008533 128 GWLELLQALVTCLD---SND-------I-------NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQ 190 (562)
Q Consensus 128 ~w~~ll~~l~~~l~---~~~-------~-------~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~ 190 (562)
.|+.++..+.+... ... . ......+.+|..+++.-...+.. -.-...++.++..+.
T Consensus 120 il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~-------v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 120 VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEA-------VATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-------HHhcccHHHHHHHHH
Confidence 45555544433221 110 0 12234556666676654443211 011345666666664
Q ss_pred C---CCHHHHHHHHHHHHHHHhhchh
Q 008533 191 S---PHTSLRKLSLGSVNQFIMLMPS 213 (562)
Q Consensus 191 ~---~~~~vr~~al~~l~~~~~~~~~ 213 (562)
+ ...+++..|+.|+..+....++
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHH
Confidence 3 3468999999999999876543
No 108
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.35 E-value=0.0085 Score=52.99 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=108.6
Q ss_pred HHHHHHHHhccCCh--hHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 132 LLQALVTCLDSNDI--NHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 132 ll~~l~~~l~~~~~--~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
.+|.+++.++++++ ..+..+..++..++..-+..-.. -.-...+|.|+++|.+++.+++..|+.++..+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-------I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-------VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-------HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 36788889998877 77778888888888654332100 0123468999999999999999999999999986
Q ss_pred hchhhHHhch-HHHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc-------C--------
Q 008533 210 LMPSALFVSM-DQYLQGLFLLSN-DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN-------K-------- 272 (562)
Q Consensus 210 ~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~-------~-------- 272 (562)
..++.-.... ...++.+..++. ..+.++++.+..+|..+.....-. ......-++.+...+ .
T Consensus 82 ~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred CCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCccccccccc
Confidence 4332111000 123556666665 467889999998888886542211 111222334333321 1
Q ss_pred -CCChhHHHHHhhhHHHhhcc-ccchhhHHhhhhHHHHHHHhhcc
Q 008533 273 -DTDDDVALEACEFWHSYFEA-QLPHENLKEFLPRLVPVLLSNMI 315 (562)
Q Consensus 273 -~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~l~ 315 (562)
..+.+++..|..++..++.. +...+.++. ...+++.++..+.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVR 204 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHH
Confidence 13668999999999999764 223333432 2345666655443
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.30 E-value=0.14 Score=49.42 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=96.8
Q ss_pred HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 133 LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 133 l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
...++...+. ++..++.|...+..+...++.. .+.-+..++.++.|.+..||..|++.+..++..
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l------------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-- 95 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFKHFPEL------------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-- 95 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGG------------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh------------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--
Confidence 3344444443 5788888889999998888863 366778899999999999999999999988764
Q ss_pred hhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhc
Q 008533 213 SALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFE 291 (562)
Q Consensus 213 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 291 (562)
.++..+...|.++++..++.-...+-++|..+....+.. -+..++..+.. .++.+|..++.|+..-..
T Consensus 96 ----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~---tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 96 ----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG---TLGGLFSQILQ----GEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp ----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHH----SCHHHHHHHHHHHHHHGG
T ss_pred ----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH---HHHHHHHHHcc----cchHHHHHHHHHHHHHHh
Confidence 345666677777777777777777888888888777653 22333333333 367899999999876443
No 110
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.06 E-value=0.15 Score=45.48 Aligned_cols=188 Identities=13% Similarity=0.153 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCCh
Q 008533 66 EIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDI 145 (562)
Q Consensus 66 ~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~ 145 (562)
..|......++..+.+. ++.....+.+.++.+..+++..+|+..+..+...+... +...+..++.|..+++++++
T Consensus 30 ~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCH
Confidence 45555555566654442 34566667777777667788999999999999998664 56778999999999999999
Q ss_pred hHHhHHHHHHHHHhhcchhcccccCCC--CCc---chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc--h------
Q 008533 146 NHMEGAMDALSKICEDIPQVLDSDVPG--LAE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM--P------ 212 (562)
Q Consensus 146 ~~~~~al~~l~~i~~~~~~~~~~~~~~--~~~---~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~--~------ 212 (562)
.+...++.+...+....-...-..... ..+ ..+..+-..++..+.+.+..+|..++|.+..++..- +
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~ 184 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLK 184 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCC
Confidence 998888888777665543332211000 000 123444555777778889999999999998877421 1
Q ss_pred -------------------hhHHhchHHHHHHHhhhccCC--CHHHHHHHHHHHHHHHhhCccchhh
Q 008533 213 -------------------SALFVSMDQYLQGLFLLSNDP--SAEVRKLVCAAFNLLIEVRPSFLEP 258 (562)
Q Consensus 213 -------------------~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~L~~l~~~~~~~~~~ 258 (562)
..+...-..++..++....++ +.....+++.+|..+++..|.+...
T Consensus 185 ~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~r 251 (257)
T 3gs3_A 185 RDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGA 251 (257)
T ss_dssp CTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 011122234566666654443 3445678889999999998887544
No 111
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.01 E-value=0.2 Score=45.97 Aligned_cols=187 Identities=11% Similarity=0.128 Sum_probs=122.9
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCc---------CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh--c
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGI---------AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ--V 165 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~---------~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~--~ 165 (562)
.|+..|..=+-.-|+.++.+++.+.+.... ...|+++..|+.+-.+++....-|. .|+..++.-.- .
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e~la~~ 159 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHEPLAKI 159 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSHHHHHH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhHHHHHH
Confidence 333344444555566666666666654311 1358888888888877664332222 23333332110 0
Q ss_pred ccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc----hhhHHhchHHHHHHHhhhccCCCHHHHHHH
Q 008533 166 LDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM----PSALFVSMDQYLQGLFLLSNDPSAEVRKLV 241 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 241 (562)
+. -...+-.+++.++.++-++-.-|+..+..+.... .+.+..+.+.+....-+++.+++--.|++.
T Consensus 160 iL----------~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 160 IL----------WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HH----------HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hh----------ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 00 0122335778889999999999999998876542 245566777777777778888888999999
Q ss_pred HHHHHHHHhh--CccchhhhHH--HHHHHHHhhcCCCChhHHHHHhhhHHHhhccccc
Q 008533 242 CAAFNLLIEV--RPSFLEPHLR--NLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLP 295 (562)
Q Consensus 242 ~~~L~~l~~~--~~~~~~~~l~--~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~ 295 (562)
++.|+.+.-. ....+..|+. +-+.++...++|....++..|+.++.-++..+.-
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 9999998765 3444555654 4566667788999999999999998888776443
No 112
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=96.99 E-value=0.37 Score=50.90 Aligned_cols=317 Identities=11% Similarity=0.055 Sum_probs=170.1
Q ss_pred chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch---hhHHhchHHHHHHHhhhccC---CCHHHHHHHHHHHHHHH
Q 008533 176 CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP---SALFVSMDQYLQGLFLLSND---PSAEVRKLVCAAFNLLI 249 (562)
Q Consensus 176 ~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~---~~~~~~~~~~l~~l~~~~~~---~~~~~~~~~~~~L~~l~ 249 (562)
..++.+.|.+..++.+.+..+...+..++..++...| +.+ ++.+++.+...+.. .++.....++++|..++
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999998777 544 45557777766654 45666677788887766
Q ss_pred hhC--ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc-ccc--h---hh--HHhhhhHHHHHHHhhcccChh
Q 008533 250 EVR--PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA-QLP--H---EN--LKEFLPRLVPVLLSNMIYADD 319 (562)
Q Consensus 250 ~~~--~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~-~~~--~---~~--~~~~l~~l~~~l~~~l~~~~~ 319 (562)
... ...++.|+..++..++.++.-+|..--..++.++..++.. +.. . +. +.....+.+..-+..+...++
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 532 3356789999999999999999988888899999888765 110 0 10 111111112221212211110
Q ss_pred hHhhhhhhhcc-------CCCCCCCCCCccccccc-CCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhH
Q 008533 320 DESLVEAEEDE-------SLPDRDQDLKPRFHSSR-LHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLM 391 (562)
Q Consensus 320 ~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~ 391 (562)
+ ..++.+.++ ....-.+++..++.+.- +. ++. .|+ .+-..-..++..+...+.++++..++
T Consensus 492 ~-~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~ll--en~--~Ee------~l~~~l~~~~~~l~~~lS~~if~~~l 560 (799)
T 1vsy_4 492 S-KTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLV--DVD--LED------SLVTKINQTTMILQESMDDKIFNYFA 560 (799)
T ss_dssp S-SSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHT--TSC--CCT------HHHHHHHHHHHHHHHTBCHHHHHHHH
T ss_pred c-ccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hcC--chH------HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 0 000000000 00000001111111100 00 000 000 12233455677777777777777777
Q ss_pred HHHHHHHcCCCCCCchhHHHHHH---HHHHHhhcchhhhhhhHHHHHHHHhhhcCCC------C---hhHHHHHHHHHHH
Q 008533 392 PVIQAKLSASGDEAWKDREAAVL---ALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK------F---PLIRSISCWTLSR 459 (562)
Q Consensus 392 ~~l~~~l~~~~~~~~~~r~aal~---~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~------~---~~vr~~a~~~l~~ 459 (562)
..+.+.+.+..-.+ ..+..+.. -+++++...++.+..+++.++..+.....+. . ...=.+..|-++-
T Consensus 561 ~k~~~fv~~n~~~~-a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~i 639 (799)
T 1vsy_4 561 SLLNRNFWSNDSFK-EKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTA 639 (799)
T ss_dssp HHHHHHHHSCSCCC-SSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHH
Confidence 77777666543111 11222111 1455555554444555555555444333211 1 1112344455555
Q ss_pred hHHHHhhhcCCCcchhhHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 008533 460 FSKFIVQDIGHQNGREQFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 460 l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~ 509 (562)
++..+... +...-+|-++++..+-.++. ..+..+-..++..+.+++..
T Consensus 640 L~~~v~~~--g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 640 LNDVLRNC--HESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALAT 688 (799)
T ss_dssp HHHHHTTT--GGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcC--cHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 55544321 22345777777777666653 34566557788888888865
No 113
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=96.95 E-value=0.0052 Score=64.56 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=87.5
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhH-HHHH-HHHhhhcCCCChhHHHHHHHHHHHhHHHHhh
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHL-SEIV-AFLIPLLDDKFPLIRSISCWTLSRFSKFIVQ 466 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l-~~~~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 466 (562)
.+.|.+. .+++++ +..|..|+.+|+.+++..... .-.+ ..++ +.+.+.|.|++..||.+|++++++++..-+.
T Consensus 35 ~i~Pll~-~L~S~~---~~~r~~A~~al~~l~~~~~~~-~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 35 KILPVLK-DLKSPD---AKSRTTAAGAIANIVQDAKCR-KLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp TTHHHHH-HHSSSC---CSHHHHHHHHHHHHTTSHHHH-HHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hHHHHHH-HcCCCC---HHHHHHHHHHHHHHHcCcHHH-HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 5667665 478888 999999999999999754321 1122 2344 5567789999999999999999999865321
Q ss_pred hcCCCcchh-hHHHHHHHHHHHhccC--------------C-------HHHHHHHHHHHHHHHHHccccccccH-HHHHH
Q 008533 467 DIGHQNGRE-QFEKVLMGLLKRILDT--------------N-------KRVQEAACSAFATLEEEAAEELAPRL-EIILQ 523 (562)
Q Consensus 467 ~~~~~~~~~-~~~~il~~l~~~l~d~--------------~-------~~vr~~a~~al~~l~~~~~~~~~~~l-~~il~ 523 (562)
. .... +-..+++.+...++.. . ..+...++.+|..+++...+.+.... ...+.
T Consensus 110 d----~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~ 185 (684)
T 4gmo_A 110 D----FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL 185 (684)
T ss_dssp H----HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred h----HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence 1 0011 1122444444333210 0 12344566777777765433222111 23344
Q ss_pred HHHHHHhhhh---hhHHHHHHHHHHHHHH
Q 008533 524 HLMMAFGKYQ---RRNLRIVYDAIGTLAD 549 (562)
Q Consensus 524 ~L~~~l~~~~---~~~~~~~~~~l~~l~~ 549 (562)
.|+..+...+ ......+.+||..+.+
T Consensus 186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 186 RLLFRLISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 4444443332 2345577777776644
No 114
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.71 E-value=0.0015 Score=58.35 Aligned_cols=186 Identities=20% Similarity=0.182 Sum_probs=119.3
Q ss_pred hhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH
Q 008533 100 PCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (562)
Q Consensus 100 ~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~ 179 (562)
.++.++++.||..++..+ + ...+..+++++++.+|..+...+ +.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~-------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------------- 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P-------VEALTPLIRDSDEVVRRAVAYRL-------PR--------------- 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C-------GGGGGGGTTCSSHHHHHHHHTTS-------CS---------------
T ss_pred HHhcCCCHHHHHHHHHhC-------C-------HHHHHHHccCcCHHHHHHHHHHC-------CH---------------
Confidence 355789999999888743 1 12356667889999998886431 10
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhh
Q 008533 180 IFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPH 259 (562)
Q Consensus 180 ~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 259 (562)
+.+...++|+++.||..+...+ +. ..+..+.+++++.+|..+...+ +.
T Consensus 101 ---~~L~~ll~D~d~~VR~~aA~~l-------~~----------~~L~~L~~D~d~~VR~~aA~~l-------~~----- 148 (244)
T 1lrv_A 101 ---EQLSALMFDEDREVRITVADRL-------PL----------EQLEQMAADRDYLVRAYVVQRI-------PP----- 148 (244)
T ss_dssp ---GGGGGTTTCSCHHHHHHHHHHS-------CT----------GGGGGGTTCSSHHHHHHHHHHS-------CG-----
T ss_pred ---HHHHHHHcCCCHHHHHHHHHhC-------CH----------HHHHHHHcCCCHHHHHHHHHhc-------CH-----
Confidence 1356678999999999987742 21 1234456788999999887631 11
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccccchhhHHhhhhHHHHHHHhhcccChhhHhhhhhhhccCCCCCCCCC
Q 008533 260 LRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQLPHENLKEFLPRLVPVLLSNMIYADDDESLVEAEEDESLPDRDQDL 339 (562)
Q Consensus 260 l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 339 (562)
+.+....+|.++.||..+..- +.. . ++..+.
T Consensus 149 -----~~l~~l~~D~d~~VR~~aa~~---l~~-----~------------ll~~ll------------------------ 179 (244)
T 1lrv_A 149 -----GRLFRFMRDEDRQVRKLVAKR---LPE-----E------------SLGLMT------------------------ 179 (244)
T ss_dssp -----GGGGGTTTCSCHHHHHHHHHH---SCG-----G------------GGGGST------------------------
T ss_pred -----HHHHHHHcCCCHHHHHHHHHc---CCH-----H------------HHHHHH------------------------
Confidence 123345788899999987753 110 0 000000
Q ss_pred CcccccccCCCCCCCCCCCccccchhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHH
Q 008533 340 KPRFHSSRLHGSENPEDDDDDIVNVWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAI 419 (562)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i 419 (562)
. +..|.+|..+...+ +. +.+...+.+++ |.+|.++...++
T Consensus 180 ------------~---------D~d~~VR~aaa~~l-------~~-------~~L~~Ll~D~d---~~VR~~aa~~l~-- 219 (244)
T 1lrv_A 180 ------------Q---------DPEPEVRRIVASRL-------RG-------DDLLELLHDPD---WTVRLAAVEHAS-- 219 (244)
T ss_dssp ------------T---------CSSHHHHHHHHHHC-------CG-------GGGGGGGGCSS---HHHHHHHHHHSC--
T ss_pred ------------c---------CCCHHHHHHHHHhC-------CH-------HHHHHHHcCCC---HHHHHHHHHcCC--
Confidence 0 01367888877642 21 34555678888 999999988754
Q ss_pred hhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 008533 420 AEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLS 458 (562)
Q Consensus 420 ~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~ 458 (562)
.+.+... .|+++.||.+|...+|
T Consensus 220 ---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 ---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1334344 9999999999976554
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=96.53 E-value=0.11 Score=43.94 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=93.4
Q ss_pred HHHHHHhhhcc-chhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCC--C-hhH
Q 008533 374 ALDVLSNVFGD-EILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDK--F-PLI 449 (562)
Q Consensus 374 ~l~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~--~-~~v 449 (562)
++..+...-|= ..+|.+..++.+.+...- .++..-...+....++..+..=.+.+|+.+++|.++.++-.+ . ..+
T Consensus 28 aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl-~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 28 AIECLEKESGLQQLVPYFIQHISELILKSF-KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHCSSCTTTHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 56666655442 455555555555444321 126666666777777777666567899999999998887321 1 279
Q ss_pred HHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHc-cccccccHHHHH
Q 008533 450 RSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTN--KRVQEAACSAFATLEEEA-AEELAPRLEIIL 522 (562)
Q Consensus 450 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~--~~vr~~a~~al~~l~~~~-~~~~~~~l~~il 522 (562)
|.-|+..++.++..+... ....-++++..+.+.+.|++ ....--|...|..+-... +..+.|.++.+.
T Consensus 107 Rd~AA~lL~~I~~~~~~~-----y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~ 177 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSRS-----YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYK 177 (196)
T ss_dssp HHHHHHHHHHHHHHHTTT-----STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-----CchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHH
Confidence 999999999999988642 34456889999999998864 445555666655554433 334445555444
No 116
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=96.00 E-value=1.1 Score=42.57 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=136.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhc-CCC---hH-HHHHHHHhh---ccCCCHHHHHHHHHHHHHHHHHhhccCCh
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQ-FPD---FN-NYLAFILAR---AEGKSVEIRQAAGLLLKNNLRTAYKSMSP 88 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~-~~~---~~-~~l~~il~~---~~~~~~~~R~~a~~~lk~~i~~~w~~l~~ 88 (562)
+.+++.-+.|+|.. .|......|-+++. -.+ |+ ...-.++.+ ....-.++- -...++...+...=..+-+
T Consensus 131 i~~Ll~lfdSeDpr-ER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIa-eLLeilgsIinGfa~PLke 208 (403)
T 3fga_B 131 VLQLLELFDSEDPR-ERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGFALPLKE 208 (403)
T ss_dssp HHHHHHGGGCSCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHH-HHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHcCCCChH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHH-HHHHHHHHHHcccCCCchH
Confidence 55666666678877 88777777776442 111 11 111111111 001111111 1122333444443344667
Q ss_pred hhHHHHHHHHhhhhhCC-chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhccc
Q 008533 89 SNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLD 167 (562)
Q Consensus 89 ~~~~~i~~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~ 167 (562)
+.+..+...|+.+.+.+ -..--..++.|+...+..++ .--..++..+.+.-=-+++.-...-+.-+..+++..+..-
T Consensus 209 ehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~- 286 (403)
T 3fga_B 209 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSE- 286 (403)
T ss_dssp HHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHH-
T ss_pred HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCc-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHH-
Confidence 77777777888777654 23334578888888888763 2333445555444434555555566777777777665421
Q ss_pred ccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH--HHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHHHHHHH
Q 008533 168 SDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAA 244 (562)
Q Consensus 168 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~ 244 (562)
+......++..+..++.+++..|-+.|+..+.+ ++..+.+.-...++.+++.+.... .+-+..++..++.+
T Consensus 287 ------f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~v 360 (403)
T 3fga_B 287 ------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 360 (403)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 123556677778888999999999998876632 222222212223444556665543 46788999999999
Q ss_pred HHHHHhhCccchhhhHH
Q 008533 245 FNLLIEVRPSFLEPHLR 261 (562)
Q Consensus 245 L~~l~~~~~~~~~~~l~ 261 (562)
+..+.+..+..|.....
T Consensus 361 lk~l~e~d~~lF~~~~~ 377 (403)
T 3fga_B 361 LKLFMEMNQKLFDDCTQ 377 (403)
T ss_dssp HHHHHTTSCCCCCTTHH
T ss_pred HHHHHHhCHHHHHHHHH
Confidence 99999988888765443
No 117
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.82 E-value=0.94 Score=40.39 Aligned_cols=146 Identities=5% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHhhhhhC----CchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccc
Q 008533 93 YIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDS 168 (562)
Q Consensus 93 ~i~~~ll~~l~~----~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~ 168 (562)
.-+..+..+|++ ++ ..+-..-.-+..++-...+..+|++++.+.....+++..+|.-....+...+..-.
T Consensus 12 ~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----- 85 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----- 85 (257)
T ss_dssp HHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG-----
T ss_pred cHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH-----
Confidence 344455555532 22 23333333333433333356889999999998778888899888888888885432
Q ss_pred cCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhc-------h------hhHHhchHHHHHHHhhhccCCCH
Q 008533 169 DVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLM-------P------SALFVSMDQYLQGLFLLSNDPSA 235 (562)
Q Consensus 169 ~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~-------~------~~~~~~~~~~l~~l~~~~~~~~~ 235 (562)
.....+++.+..++++.++.|.+.++.|..++.... + +.....+..+=..++......+.
T Consensus 86 -------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~ 158 (257)
T 3gs3_A 86 -------ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNEND 158 (257)
T ss_dssp -------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCH
T ss_pred -------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCc
Confidence 256788899999999999999999998887765421 1 11222333334455555666677
Q ss_pred HHHHHHHHHHHHHHhh
Q 008533 236 EVRKLVCAAFNLLIEV 251 (562)
Q Consensus 236 ~~~~~~~~~L~~l~~~ 251 (562)
.+|..+++.+..++-.
T Consensus 159 gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 159 GIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh
Confidence 8888777777666543
No 118
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.46 E-value=1.8 Score=41.03 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhH
Q 008533 68 RQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINH 147 (562)
Q Consensus 68 R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~ 147 (562)
|......++..+.+. ++.....+...++++-.+++..||+.++..|+..+... .+..+..++.|..++.++++.+
T Consensus 42 Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V 116 (386)
T 3o2t_A 42 KITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNV 116 (386)
T ss_dssp HHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHH
Confidence 444444455544432 23334445556666667889999999999999999764 4567899999999999999998
Q ss_pred HhHHHHHHHHHhhcchhcccccCC-C-CCc---chhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch------h---
Q 008533 148 MEGAMDALSKICEDIPQVLDSDVP-G-LAE---CPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP------S--- 213 (562)
Q Consensus 148 ~~~al~~l~~i~~~~~~~~~~~~~-~-~~~---~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~------~--- 213 (562)
...++.+...+....-...-.... . ..+ ..+..+-..++..+.+.+..||..++|.+..++..-. .
T Consensus 117 ~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~ 196 (386)
T 3o2t_A 117 VKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPR 196 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 888888877766433222111100 0 000 1234455557777788899999999999988774210 0
Q ss_pred ---------------------hHHhchHHHHHHHhhhccC--CCHHHHHHHHHHHHHHHhhCccchhhhHHHHH
Q 008533 214 ---------------------ALFVSMDQYLQGLFLLSND--PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLF 264 (562)
Q Consensus 214 ---------------------~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~ 264 (562)
.+...-..++..++..+.. .++.....++.+|..++...|.+....++.+.
T Consensus 197 ~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~ 270 (386)
T 3o2t_A 197 RQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYE 270 (386)
T ss_dssp GGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHH
T ss_pred ccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 0111123456677766654 23445667899999999999988765555444
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.46 E-value=0.0085 Score=53.44 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD 141 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~ 141 (562)
+.++.+|..++..+ ++. .+..++.++++.||..++..+. . +.+..+++
T Consensus 61 d~~~~VR~~AA~~l-----------~~~-------~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~ll~ 108 (244)
T 1lrv_A 61 DPFWERRAIAVRYS-----------PVE-------ALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSALMF 108 (244)
T ss_dssp CSSHHHHHHHHTTS-----------CGG-------GGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGGTTT
T ss_pred CCCHHHHHHHHHhC-----------CHH-------HHHHHccCcCHHHHHHHHHHCC-------H-------HHHHHHHc
Confidence 77899999888632 221 3555678999999999886421 1 34667788
Q ss_pred cCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHH
Q 008533 142 SNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQ 221 (562)
Q Consensus 142 ~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~ 221 (562)
++++.+|..+...+ +. . .+..+++|+++.||..+...+ +.
T Consensus 109 D~d~~VR~~aA~~l-------~~--------------~----~L~~L~~D~d~~VR~~aA~~l-------~~-------- 148 (244)
T 1lrv_A 109 DEDREVRITVADRL-------PL--------------E----QLEQMAADRDYLVRAYVVQRI-------PP-------- 148 (244)
T ss_dssp CSCHHHHHHHHHHS-------CT--------------G----GGGGGTTCSSHHHHHHHHHHS-------CG--------
T ss_pred CCCHHHHHHHHHhC-------CH--------------H----HHHHHHcCCCHHHHHHHHHhc-------CH--------
Confidence 99999998876632 11 1 144568999999999998731 21
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhh
Q 008533 222 YLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEF 285 (562)
Q Consensus 222 ~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~ 285 (562)
+.+..+.+++++.+|..+...+ +. +.+....+|.++.||..++..
T Consensus 149 --~~l~~l~~D~d~~VR~~aa~~l-------~~----------~ll~~ll~D~d~~VR~aaa~~ 193 (244)
T 1lrv_A 149 --GRLFRFMRDEDRQVRKLVAKRL-------PE----------ESLGLMTQDPEPEVRRIVASR 193 (244)
T ss_dssp --GGGGGTTTCSCHHHHHHHHHHS-------CG----------GGGGGSTTCSSHHHHHHHHHH
T ss_pred --HHHHHHHcCCCHHHHHHHHHcC-------CH----------HHHHHHHcCCCHHHHHHHHHh
Confidence 1233456789999999887751 11 233456789999999988864
No 120
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.39 E-value=3.3 Score=43.71 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=90.0
Q ss_pred cCChhhHHHHHHHHh----hhhhCCchHHHHHHHHHHHHHHHhcC---cCchHHHHHHHHHHhcc---CChhHHhHHHHH
Q 008533 85 SMSPSNQQYIKSELL----PCLGAADRHIRSTVGTIVSVVVQLGG---IAGWLELLQALVTCLDS---NDINHMEGAMDA 154 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll----~~l~~~~~~vr~~~~~~i~~i~~~~~---~~~w~~ll~~l~~~l~~---~~~~~~~~al~~ 154 (562)
.++++.+..+.+.++ .++-+.+..+...+..++..++...| .--.|.++..+...+.+ .++....+++.+
T Consensus 327 ~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~ 406 (799)
T 1vsy_4 327 CLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQ 406 (799)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 366676665555444 44557899999999999999999887 66778888888888877 566666677888
Q ss_pred HHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhch
Q 008533 155 LSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 155 l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~ 212 (562)
+..++..+... ..+...+..++..++.++.-+|+.--..+++.+..++..+|
T Consensus 407 l~~~~r~lv~~------~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ip 458 (799)
T 1vsy_4 407 FTRVIRFIVMD------KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIP 458 (799)
T ss_dssp HHTTHHHHTTS------TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcC------cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhcc
Confidence 87776654431 01123566777777888888888888889999999988766
No 121
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.18 E-value=1.2 Score=37.53 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=57.4
Q ss_pred cchhhHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 008533 472 NGREQFEKVLMGLLKRILDT---NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGT 546 (562)
Q Consensus 472 ~~~~~~~~il~~l~~~l~d~---~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~ 546 (562)
...+|++++++.++.++-.. ...+|..|+..++.+++..++.....-+.+++.+.+.+.++. +.....+.|+..
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~-~~l~t~YGAi~G 156 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN-RSEDSQYGALYC 156 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT-SCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC-CChHHHHHHHHH
Confidence 46999999999999997443 237999999999999999987777777889999998887764 334444444444
No 122
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.77 E-value=1.5 Score=40.18 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=115.9
Q ss_pred HhhhHHHHHHHHHhhhcc------chhhhhHHHHHHHHcCCCCCCchhHHHH-HHHHHHHhhcchhhhhhhHHHHHHHHh
Q 008533 367 LRKCSAAALDVLSNVFGD------EILPTLMPVIQAKLSASGDEAWKDREAA-VLALGAIAEGCIKGLYPHLSEIVAFLI 439 (562)
Q Consensus 367 ~r~~a~~~l~~l~~~~~~------~~~~~l~~~l~~~l~~~~~~~~~~r~aa-l~~l~~i~~~~~~~~~~~l~~~~~~l~ 439 (562)
+++.....+........+ .++|.++..+..-.++.. +..|++- +.+++.++...++.+.+.++.++..++
T Consensus 45 vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~v---p~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNV---PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSC---GGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCC---cccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444444444443322 334445443333233344 6667654 556677788777777787877777655
Q ss_pred h----hcC---CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc-
Q 008533 440 P----LLD---DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA- 511 (562)
Q Consensus 440 ~----~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~- 511 (562)
. +++ ++.|..|..-...+..+...+.+.+- ....+.+..++..++=+++++...|...+...+..+++++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~-~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFL-AIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHH-HSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHH-cCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 4 444 36799999999999998876433210 02356678888888888999999999999999999887762
Q ss_pred ------ccccccHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHh
Q 008533 512 ------EELAPRLEIILQHLMMAFGKYQRRN-LRIVYDAIGTLADAVG 552 (562)
Q Consensus 512 ------~~~~~~l~~il~~L~~~l~~~~~~~-~~~~~~~l~~l~~~~~ 552 (562)
.....|+-.+++.++..+-+..++. .+.=...+..+...+.
T Consensus 201 ~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve 248 (321)
T 1w9c_A 201 EEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVE 248 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHH
Confidence 2344577888888888888876542 3333344444444333
No 123
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=94.62 E-value=3.5 Score=39.92 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=102.6
Q ss_pred cCChhhHHHHHHHHhhhhhCC-chHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcch
Q 008533 85 SMSPSNQQYIKSELLPCLGAA-DRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIP 163 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~ 163 (562)
.+.++.+..+...|+.+.+.. -..--..++.|+..++..++ .--..++..|++.-=-+++.-...-+.-+..+++..+
T Consensus 238 PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~ 316 (449)
T 2npp_B 238 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIE 316 (449)
T ss_dssp SCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc-HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCC
Confidence 456777777777777777654 23334468888888887763 2223444555444333455555556677777777665
Q ss_pred hcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHH--HHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHHH
Q 008533 164 QVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQ--FIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKL 240 (562)
Q Consensus 164 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~--~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~ 240 (562)
..- +......++..+..++++++..|-+.|+..+.+ ++..+.+.-...++.+++.+.... .+.+..++..
T Consensus 317 ~~e-------f~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~l 389 (449)
T 2npp_B 317 PSE-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGL 389 (449)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHH
Confidence 421 123556677778889999999999999876642 222221111122334455554433 4567889999
Q ss_pred HHHHHHHHHhhCccchhh
Q 008533 241 VCAAFNLLIEVRPSFLEP 258 (562)
Q Consensus 241 ~~~~L~~l~~~~~~~~~~ 258 (562)
+..++..+.+..+..+..
T Consensus 390 a~~vlk~l~e~d~~lf~~ 407 (449)
T 2npp_B 390 IYNALKLFMEMNQKLFDD 407 (449)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHH
Confidence 999999888887776643
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.73 E-value=4.2 Score=37.44 Aligned_cols=181 Identities=13% Similarity=0.165 Sum_probs=108.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhccCChh-----hHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhc--------CcC
Q 008533 61 EGKSVEIRQAAGLLLKNNLRTAYKSMSPS-----NQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLG--------GIA 127 (562)
Q Consensus 61 ~~~~~~~R~~a~~~lk~~i~~~w~~l~~~-----~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~--------~~~ 127 (562)
..-+.+.|.-++.++.+.+...-..=.+. .+..|...|+.+..+ +.+--..+..+..+++++ .+.
T Consensus 88 ~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mLRecir~e~la~~iL~~~~ 165 (341)
T 1upk_A 88 QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIMLRECIRHEPLAKIILWSEQ 165 (341)
T ss_dssp GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHHHHHHTSHHHHHHHHHSGG
T ss_pred ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHHHHHHHhHHHHHHHhccHH
Confidence 35677788888777777765432211110 112333344444433 333333444444444432 123
Q ss_pred chHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 008533 128 GWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQF 207 (562)
Q Consensus 128 ~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~ 207 (562)
.| .+.+.++.++-.+-.-|+.++..+.......... .+....+.++..+-+++++++.-+|..+++.++.+
T Consensus 166 f~-----~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvae----fL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 166 FY-----DFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAE----FLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp GG-----HHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHH----HHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHH----HHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 33 3446777777777777888888887765442210 11123456777788899999999999999999998
Q ss_pred Hhhch--hhHHhch--HHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC
Q 008533 208 IMLMP--SALFVSM--DQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 208 ~~~~~--~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
+..-+ ..+..++ +.-+..+..++.+....++-.++-++--++.+.
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 86422 1122221 233566677788888999999998888777653
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.57 E-value=0.93 Score=36.17 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~~ 553 (562)
.-...+..+.+.|++.++.++..|...|..++++|+..|...+ ..+++.+.+++...+..++..+++.+..-+.+.+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3467788888899999999999999999999999987666443 56666667777666667777888888888887765
Q ss_pred h
Q 008533 554 E 554 (562)
Q Consensus 554 ~ 554 (562)
+
T Consensus 119 ~ 119 (140)
T 3ldz_A 119 D 119 (140)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=92.64 E-value=7 Score=43.35 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=84.5
Q ss_pred hhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 008533 426 GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFAT 505 (562)
Q Consensus 426 ~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~ 505 (562)
.+..+++.++...-..+.+.++.|+.-+......+.+.+. .-+-+.++..++..+.+.+..--..|...|..
T Consensus 393 vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd--------~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~ 464 (1323)
T 3s4w_B 393 VLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFD--------TYCQQEVVGALVTHVCSGTEAEVDTALDVLLE 464 (1323)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSC--------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Confidence 3456777788877778889999999999888777777642 22346778888776655543333458888888
Q ss_pred HHHHccccccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Q 008533 506 LEEEAAEELAPRLEIILQHLMMAFGKYQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 506 l~~~~~~~~~~~l~~il~~L~~~l~~~~~~~~~~~~~~l~~l~~~~~ 552 (562)
++...+..+.||.. ++.++++.+.+-.....|.+++.+++++-.-+
T Consensus 465 L~~~~~~~l~~~a~-~l~giLD~l~~l~~~QiRklf~iL~~laf~~~ 510 (1323)
T 3s4w_B 465 LIVLNASAMRLNAA-FVKGILDYLENMSPQQIRKIFCILSTLAFSQQ 510 (1323)
T ss_dssp HHHHCHHHHHHTHH-HHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHhHHHH-HHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 88877777777655 56677777777777778888888888775443
No 127
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.67 E-value=6.3 Score=43.43 Aligned_cols=174 Identities=16% Similarity=0.065 Sum_probs=111.1
Q ss_pred ChHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHhhc---cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHh
Q 008533 48 DFNNYLAFILARAE-GKSVEIRQAAGLLLKNNLRTAYK---SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 48 ~~~~~l~~il~~~~-~~~~~~R~~a~~~lk~~i~~~w~---~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~ 123 (562)
+.+..+..++.+.. ..++.+|..+...+...+.+.-. ..+++....+.+.+.+.+...+..-+..+..+||.+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 35666666665421 35678888888888888865432 24556667778788888877777777778888888874
Q ss_pred cCcCchHHHHHHHHHHhcc-----C--ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC--CCH
Q 008533 124 GGIAGWLELLQALVTCLDS-----N--DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS--PHT 194 (562)
Q Consensus 124 ~~~~~w~~ll~~l~~~l~~-----~--~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~--~~~ 194 (562)
|..++.|..++.. . ...+|..|+.+|..+....+ ..+-+.+++.+.+ .+.
T Consensus 470 ------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---------------~~v~~il~~i~~n~~e~~ 528 (1056)
T 1lsh_A 470 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---------------RKVQEIVLPIFLNVAIKS 528 (1056)
T ss_dssp ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---------------HHHHHHHHHHHHCTTSCH
T ss_pred ------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---------------HHHHHHHHHHhcCCCCCh
Confidence 2345555555532 1 24677889999887765433 2344556777743 578
Q ss_pred HHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhc-cCCCHHHHHHHHHHHHHHHhhC
Q 008533 195 SLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLS-NDPSAEVRKLVCAAFNLLIEVR 252 (562)
Q Consensus 195 ~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~L~~l~~~~ 252 (562)
++|.+|+..+.. ..|+ ..++..+...+ .+++.+++.-+...|..+++..
T Consensus 529 EvRiaA~~~Lm~---t~P~------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 529 ELRIRSCIVFFE---SKPS------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHH---TCCC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---HCcC------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 999999887753 2232 11233333333 3466778777777777777654
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=91.01 E-value=22 Score=39.24 Aligned_cols=157 Identities=14% Similarity=0.056 Sum_probs=101.5
Q ss_pred CchHHHHHHHHHHHHHHHhc-------CcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcch
Q 008533 105 ADRHIRSTVGTIVSVVVQLG-------GIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECP 177 (562)
Q Consensus 105 ~~~~vr~~~~~~i~~i~~~~-------~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~ 177 (562)
.++.+|..+..++|.++... +.+..+.+...+.+.+...+...+..+|.+|+.+-.
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------------- 469 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------------- 469 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------------
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------------
Confidence 46789998999999988753 123356777777788877777888889999988743
Q ss_pred hHhhHHHHHHhhcC-------CCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 008533 178 INIFLPRLLQFFQS-------PHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 178 ~~~il~~l~~~l~~-------~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~ 250 (562)
...++.+.+++.. ....+|.+|+.+|..+....|....+. +++.+.+ ...++++|.+++..|..
T Consensus 470 -p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~i---l~~i~~n--~~e~~EvRiaA~~~Lm~--- 540 (1056)
T 1lsh_A 470 -PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI---VLPIFLN--VAIKSELRIRSCIVFFE--- 540 (1056)
T ss_dssp -GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH---HHHHHHC--TTSCHHHHHHHHHHHHH---
T ss_pred -hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHH---HHHHhcC--CCCChHHHHHHHHHHHH---
Confidence 1234455555431 235788999999988876554333221 2233322 24568999988877743
Q ss_pred hCccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhcc
Q 008533 251 VRPSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 251 ~~~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 292 (562)
..|.. ..+..+... ...+.+.+|+......+..+++.
T Consensus 541 t~P~~--~~l~~ia~~---l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 541 SKPSV--ALVSMVAVR---LRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCCCH--HHHHHHHHH---HTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HCcCH--HHHHHHHHH---HhhCchHHHHHHHHHHHHHHHhc
Confidence 33332 223333332 23556788988888888888876
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.84 E-value=3.1 Score=34.43 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=58.4
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhcc------CCHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRILD------TNKRVQEAACSAFA 504 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~d------~~~~vr~~a~~al~ 504 (562)
...+..|.+.+.+.++.|+..|+.++..+.+.++..+ +.+. -..+++.+.+.+.. .+..||..+...|.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~F----h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 124 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRF----HNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLY 124 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH----HHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH----HHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 3467788889999999999999999999999876421 2111 14556667776652 36899999999999
Q ss_pred HHHHHccc
Q 008533 505 TLEEEAAE 512 (562)
Q Consensus 505 ~l~~~~~~ 512 (562)
.+....+.
T Consensus 125 ~W~~~f~~ 132 (171)
T 1juq_A 125 SWTMALPE 132 (171)
T ss_dssp HHHHHCTT
T ss_pred HHHHHcCC
Confidence 99988754
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.62 E-value=12 Score=35.52 Aligned_cols=243 Identities=16% Similarity=0.185 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh--hcCC----ChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccC
Q 008533 13 GFNEICRLLEQQISPSSTADKSQIWQQLQQY--SQFP----DFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (562)
Q Consensus 13 ~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~--~~~~----~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l 86 (562)
.-+.+..+|++.....++ .+-....+.+++ ..+| +|+..++..-. +.+..+|.+.+-++.....+.
T Consensus 23 ~~~~v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~---d~~~~vRk~~a~FieEa~~~~---- 94 (386)
T 3o2t_A 23 TSERVVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQA---DKSIEVRKFVIGFIEEACKRD---- 94 (386)
T ss_dssp HHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGG---CSCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc---CCcHHHHHHHHHHHHHHHHHH----
Confidence 347788888887664345 666667777773 2456 45554444333 668999999999988877653
Q ss_pred ChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHh-------cCc------CchHHH---HHHHHHHhccCChhHHhH
Q 008533 87 SPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQL-------GGI------AGWLEL---LQALVTCLDSNDINHMEG 150 (562)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~-------~~~------~~w~~l---l~~l~~~l~~~~~~~~~~ 150 (562)
.+....+...|..+|.++++.|.+.+..+.+.+... .+. ..|..+ -..+...+.+.+..+|..
T Consensus 95 -~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ 173 (386)
T 3o2t_A 95 -IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTH 173 (386)
T ss_dssp -GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHH
Confidence 334455666777777888888888777777777643 111 458654 456777777888889999
Q ss_pred HHHHHHHHhhcchhcc-cc--------c-----CC---CC-----CcchhHhhHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 008533 151 AMDALSKICEDIPQVL-DS--------D-----VP---GL-----AECPINIFLPRLLQFFQSP--HTSLRKLSLGSVNQ 206 (562)
Q Consensus 151 al~~l~~i~~~~~~~~-~~--------~-----~~---~~-----~~~~~~~il~~l~~~l~~~--~~~vr~~al~~l~~ 206 (562)
++..+..++-...... .+ + .+ .+ ++.....++..++..+..+ ++-.-..++.++..
T Consensus 174 aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~ 253 (386)
T 3o2t_A 174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLAN 253 (386)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHH
Confidence 9988887764332110 00 0 01 11 1245567788888888763 34455667888888
Q ss_pred HHhhchhhHHhchHHHHHHHhhhcc--------CCCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhh
Q 008533 207 FIMLMPSALFVSMDQYLQGLFLLSN--------DPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQV 270 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~ 270 (562)
++..-|.... .+++.+..... ..-..+++..=..|..+.++.+. .++-++|-+++...
T Consensus 254 Iak~RP~~~~----rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s--~~~~~~I~~~L~~L 319 (386)
T 3o2t_A 254 IARQRPMFMS----EVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPAS--LEFQAQITTLLVDL 319 (386)
T ss_dssp HHHHSGGGHH----HHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGG--GGGHHHHHHHHHHT
T ss_pred HHHhcHHHHH----HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHHH
Confidence 8876665433 23333332211 11123444444445555554333 26666666665553
No 131
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=90.35 E-value=2.9 Score=33.64 Aligned_cols=78 Identities=8% Similarity=-0.019 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHhh------hhhhHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~~~l~~------~~~~~~~~~~~~l~~l 547 (562)
.-...+..+.+.+++.++.++..|...|..++++|+..|... -..+++.|.+++.. ....++..+++.|..-
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 346778888899999999999999999999999998766443 35677777877753 2345666888888887
Q ss_pred HHHHhh
Q 008533 548 ADAVGF 553 (562)
Q Consensus 548 ~~~~~~ 553 (562)
+.+.+.
T Consensus 125 ~~~f~~ 130 (149)
T 3g2s_A 125 TVGLPE 130 (149)
T ss_dssp HHHCTT
T ss_pred HHHhCC
Confidence 776654
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.24 E-value=1.8 Score=35.46 Aligned_cols=78 Identities=6% Similarity=0.026 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHh
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK-YQRRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~-~~~~~~~~~~~~l~~l~~~~~ 552 (562)
.-...+..+.+.|++.++.|+..|...|..++++|+..|...+ ..+++.|.+++.. .+..++..+++.|..-+.+.+
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467788888889999999999999999999999987665433 4566666666664 334566688888877777666
Q ss_pred h
Q 008533 553 F 553 (562)
Q Consensus 553 ~ 553 (562)
.
T Consensus 129 ~ 129 (163)
T 1x5b_A 129 K 129 (163)
T ss_dssp T
T ss_pred C
Confidence 4
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=90.08 E-value=5 Score=31.88 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhh------hhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY------PHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFS 461 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~------~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~ 461 (562)
...+..+...+++.+ +.+..-|+..+-.++.+|+..+. .+++.+.. .+...++.|+..++..+..++
T Consensus 41 k~a~rai~Krl~~~n---~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~----l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKD---PHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN----VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH----HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH----HhccCCHHHHHHHHHHHHHHH
Confidence 466788888898887 88888899999999998875543 34444433 333468999999999999999
Q ss_pred HHHhhhcCCCcchhhHHHHHHHH
Q 008533 462 KFIVQDIGHQNGREQFEKVLMGL 484 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~il~~l 484 (562)
..++.. ..-.++..++..|
T Consensus 114 ~~f~~~----~~l~~i~~~Y~~L 132 (140)
T 3ldz_A 114 DEFKND----PQLSLISAMIKNL 132 (140)
T ss_dssp HHHTTC----GGGTHHHHHHHHH
T ss_pred HHhCCC----CCchHHHHHHHHH
Confidence 887532 1233455555544
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.32 E-value=13 Score=34.20 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=94.1
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHH-----HHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCC
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLEL-----LQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVP 171 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~l-----l~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~ 171 (562)
.++..|.+.+...++.+-.-+..+...| ...-.++ +..|++.+...+.+...-+|.+++.+.......-.
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g---- 196 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG---- 196 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH----
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc----
Confidence 3444555555555555666666655543 2233444 45677777777888888999999999886433211
Q ss_pred CCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH---hchH--------HHHHHHhhhcc---CCCHHH
Q 008533 172 GLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF---VSMD--------QYLQGLFLLSN---DPSAEV 237 (562)
Q Consensus 172 ~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~---~~~~--------~~l~~l~~~~~---~~~~~~ 237 (562)
++ ....++..+..++.+.+..|.+.|++.+..++.+.+.... ..+. ..+..+...++ ..|.++
T Consensus 197 -vv--s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 197 -VV--AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp -HH--HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred -hh--CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 00 0255778888888888899999999999999987653221 1111 01233333333 467788
Q ss_pred HHHHHHHHHHHHhhCc
Q 008533 238 RKLVCAAFNLLIEVRP 253 (562)
Q Consensus 238 ~~~~~~~L~~l~~~~~ 253 (562)
...++..+..+....+
T Consensus 274 q~~amtLIN~lL~~ap 289 (339)
T 3dad_A 274 LVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8888888877766655
No 135
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=89.08 E-value=14 Score=34.09 Aligned_cols=149 Identities=13% Similarity=0.171 Sum_probs=90.7
Q ss_pred HHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhh-
Q 008533 136 LVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSA- 214 (562)
Q Consensus 136 l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~- 214 (562)
+++.+.+++...+..++.-|..+...-..... +.+..+=+..|+......+.+...-++.+|..++.+....
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~-------EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVP-------EFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHH-------HHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHH-------HHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccccc
Confidence 33444455666677777777775432111100 0122333556777777788999999999999988763211
Q ss_pred -HHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhhhHHHH-----------HHHHHhhcC---CCChhHH
Q 008533 215 -LFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEPHLRNL-----------FEYMLQVNK---DTDDDVA 279 (562)
Q Consensus 215 -~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i-----------~~~~~~~~~---~~~~~v~ 279 (562)
+.. -+.+++.+..+....+..+.+.+++.|..++...+....-....+ .+.++..++ ..+.++.
T Consensus 196 gvvs-~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 196 GVVA-HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred chhC-CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 111 245677777777777788999999999999887654432111111 112233333 4677888
Q ss_pred HHHhhhHHHhhcc
Q 008533 280 LEACEFWHSYFEA 292 (562)
Q Consensus 280 ~~a~~~l~~~~~~ 292 (562)
.+|+..+..+...
T Consensus 275 ~~amtLIN~lL~~ 287 (339)
T 3dad_A 275 VYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888887765443
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.02 E-value=3.1 Score=33.44 Aligned_cols=77 Identities=9% Similarity=0.003 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh------hhhhHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTL 547 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~------~~~~~~~~~~~~l~~l 547 (562)
.-...+..+.+.|++.++.++..|...|..++++|+..|...+ ..+++.|.+++.. ....++..+++.|..-
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467788888899999999999999999999999987665443 6777777777763 2345666788888777
Q ss_pred HHHHh
Q 008533 548 ADAVG 552 (562)
Q Consensus 548 ~~~~~ 552 (562)
+.+.+
T Consensus 115 ~~~f~ 119 (148)
T 1mhq_A 115 TVWFP 119 (148)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 66654
No 137
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.35 E-value=4.4 Score=33.49 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhh------hhhhHHHHHHHHHHHHH
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGK------YQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~------~~~~~~~~~~~~l~~l~ 548 (562)
-...+..+.+.+++.++.|+..|...|..++++|+..|...+ ..+++.|.+++.. ....++..+++.|..-+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999999976655432 5667777777753 23456667888887777
Q ss_pred HHHhh
Q 008533 549 DAVGF 553 (562)
Q Consensus 549 ~~~~~ 553 (562)
.+.+.
T Consensus 128 ~~f~~ 132 (171)
T 1juq_A 128 MALPE 132 (171)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 66553
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.13 E-value=1.8 Score=34.82 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcC------CCHHHHHHHHHH
Q 008533 130 LELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQS------PHTSLRKLSLGS 203 (562)
Q Consensus 130 ~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~------~~~~vr~~al~~ 203 (562)
.+.+..|.+.+++.++.+...||.+|..+++.++..|..++ ....++..+.+.+.. .+..|+..++..
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev------as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~l 110 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV------AKFRFLNELIKVLSPKYLGSWATGKVKGRVIEI 110 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH------TSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------hhHHHHHHHHHHHccccCCCCCCHHHHHHHHHH
Confidence 45677888889999999999999999999999998764332 236678888887764 477999999999
Q ss_pred HHHHHhhch
Q 008533 204 VNQFIMLMP 212 (562)
Q Consensus 204 l~~~~~~~~ 212 (562)
+..+....+
T Consensus 111 i~~W~~~f~ 119 (148)
T 1mhq_A 111 LFSWTVWFP 119 (148)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHcC
Confidence 999887554
No 139
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.04 E-value=7.4 Score=31.83 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhH-HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQF-EKVLMGLLKRILD-TNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~-~~il~~l~~~l~d-~~~~vr~~a~~al~~l~~~ 509 (562)
...+..|.+.+.+.+|.++..|+.++..+.+.++.. .+.+.- ...++.+.+.+.. .++.||..+...|..+...
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 346777888889999999999999999999987542 121111 3455555555544 5789999999999999887
Q ss_pred ccc
Q 008533 510 AAE 512 (562)
Q Consensus 510 ~~~ 512 (562)
.+.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 754
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=86.35 E-value=11 Score=30.12 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhh------hhHHHHHHHHhhhc--CCCChhHHHHHHHHHHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLY------PHLSEIVAFLIPLL--DDKFPLIRSISCWTLSR 459 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~------~~l~~~~~~l~~~l--~d~~~~vr~~a~~~l~~ 459 (562)
...+..+...+++.+ +.+..-|+..|-.++.+|+..+. .|++.++..+.+.. ...++.||..++..+..
T Consensus 47 k~a~ral~krl~~~n---~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 123 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQ---EWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYS 123 (149)
T ss_dssp HHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHH
Confidence 466778888888888 99999999999999999976542 34444443333211 12578999999999999
Q ss_pred hHHHHh
Q 008533 460 FSKFIV 465 (562)
Q Consensus 460 l~~~~~ 465 (562)
++..++
T Consensus 124 W~~~f~ 129 (149)
T 3g2s_A 124 WTVGLP 129 (149)
T ss_dssp HHHHCT
T ss_pred HHHHhC
Confidence 998875
No 141
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=83.58 E-value=34 Score=33.28 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=66.2
Q ss_pred hcCCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHH-------HHHHHHhhh-hhCCchHHHHHHHH
Q 008533 44 SQFPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQ-------YIKSELLPC-LGAADRHIRSTVGT 115 (562)
Q Consensus 44 ~~~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~-------~i~~~ll~~-l~~~~~~vr~~~~~ 115 (562)
..++.....++.+|.. ...+.+.+....++-..+...- ..+.... ..+ .++.. +...++.....++.
T Consensus 73 ~~~~~~~~~~l~lL~~--~~~~d~vqYvL~Li~DlL~~~~--~~~~~~~~f~~~~~~~~-~l~~~~~~~dd~~~ll~a~~ 147 (480)
T 1ho8_A 73 KVNGKTLIPLIHLLST--SDNEDCKKSVQNLIAELLSSDK--YGDDTVKFFQEDPKQLE-QLFDVSLKGDFQTVLISGFN 147 (480)
T ss_dssp -CSSTTHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHCSS--SSHHHHHHHHHCTTHHH-HHHHHCSCSSHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHhh--cChHHHHHHHHHHHHHHHhcCc--chHHHHHHHhhCcccch-HHHHHHhcccchHHHHHHHH
Confidence 3456677788888886 7888888888887777775421 1111000 111 13332 23345556666777
Q ss_pred HHHHHHHhcCc--CchHHHHH--HHHHHhccC-ChhHHhHHHHHHHHHhhcchh
Q 008533 116 IVSVVVQLGGI--AGWLELLQ--ALVTCLDSN-DINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 116 ~i~~i~~~~~~--~~w~~ll~--~l~~~l~~~-~~~~~~~al~~l~~i~~~~~~ 164 (562)
+++.++...+. +..+.++. -++..+++. +.+.+..++.+|..++..-..
T Consensus 148 l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~ 201 (480)
T 1ho8_A 148 VVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY 201 (480)
T ss_dssp HHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH
Confidence 77777543322 23345555 455556553 345566788888888775443
No 142
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=83.43 E-value=14 Score=28.79 Aligned_cols=68 Identities=7% Similarity=0.145 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 008533 430 HLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 430 ~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~ 509 (562)
+++..+...+..|+.....++..+.|++.. ..+.+.++..+.+.+....+.-|....+.+..++.+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h--------------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~n 70 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIEN--------------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQN 70 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 455556666777887777788877777643 334566777777777777788899999999999998
Q ss_pred cc
Q 008533 510 AA 511 (562)
Q Consensus 510 ~~ 511 (562)
++
T Consensus 71 s~ 72 (132)
T 4flb_A 71 CK 72 (132)
T ss_dssp TT
T ss_pred hc
Confidence 83
No 143
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=83.22 E-value=23 Score=30.93 Aligned_cols=132 Identities=10% Similarity=0.021 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhhCCchHHHHHHH-HHHHHHHHhcCcCchHHHHHHHHHHh
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLGAADRHIRSTVG-TIVSVVVQLGGIAGWLELLQALVTCL 140 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~-~~i~~i~~~~~~~~w~~ll~~l~~~l 140 (562)
+..-+.|.+|..+++.. ...++++....+.. ++. .-.++.+-...| .+++.++...+.. +.+.+..++
T Consensus 72 ~~~~E~r~~ai~~l~~~----~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p~~----~~~~l~~W~ 140 (232)
T 3jxy_A 72 LPEREFQAAALDIMQKY----KKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHPEL----ISAYIPKWI 140 (232)
T ss_dssp SSBHHHHHHHHHHHHHT----GGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCGGG----GGGTHHHHH
T ss_pred CcHHHHHHHHHHHHHHH----HHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCHHH----HHHHHHHHh
Confidence 45567898888877643 23355555555542 222 235677766664 6778887764322 345677889
Q ss_pred ccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhc
Q 008533 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVS 218 (562)
Q Consensus 141 ~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~ 218 (562)
.|+++-.|..|+..+. +.... .....+++.+...+.+++.-|+++.-.+|..+....|+...++
T Consensus 141 ~s~~~w~rR~ai~~~l------~~~~~--------~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 141 ASDNIWLQRAAILFQL------KYKQK--------MDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp HSSCHHHHHHHHHTTT------TCGGG--------CCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCCchHHHHHHHHHHH------HHHhC--------CCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 9999988888876541 11111 1235567777788899999999999999999888766544443
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=83.18 E-value=7.9 Score=33.71 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccccccc--HHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHhh
Q 008533 477 FEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPR--LEIILQHLMMAFGKY-QRRNLRIVYDAIGTLADAVGF 553 (562)
Q Consensus 477 ~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~--l~~il~~L~~~l~~~-~~~~~~~~~~~l~~l~~~~~~ 553 (562)
-...+..|.+.|++.++.|+..|...|..++++|+..|... -..+++.|.+++... ...++..+++.|..-+.+.+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 46788889999999999999999999999999997654432 245555555555543 345666888888887777654
Q ss_pred h
Q 008533 554 E 554 (562)
Q Consensus 554 ~ 554 (562)
+
T Consensus 123 ~ 123 (226)
T 3zyq_A 123 E 123 (226)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=82.73 E-value=5.6 Score=35.95 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=79.5
Q ss_pred HHHHHHHHHhccC------ChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH---hhHHHHHHhhcCCCHHHHHHHH
Q 008533 131 ELLQALVTCLDSN------DINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN---IFLPRLLQFFQSPHTSLRKLSL 201 (562)
Q Consensus 131 ~ll~~l~~~l~~~------~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~---~il~~l~~~l~~~~~~vr~~al 201 (562)
.=+..+..+++++ +......+|..|..+..++...+. .+. .++..|+ +..+..+.+|..|.
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K---------I~~~ef~lL~nL~-~~~~~~~~~rE~aa 91 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK---------IITHEFALLANLS-LNENLPLTLRELST 91 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH---------HHHHHHHHHHHHH-HCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH---------HHhCcHHHHHHHH-hhccCChhHHHHHH
Confidence 3334444444443 445567778777777766654321 222 2233333 33445678999999
Q ss_pred HHHHHHHhhchhhHH---hchHHHHHHHhhhc----cC---CCHHHHHHHHHHHHHHHhhCccchhhhHHHHHHHHHhhc
Q 008533 202 GSVNQFIMLMPSALF---VSMDQYLQGLFLLS----ND---PSAEVRKLVCAAFNLLIEVRPSFLEPHLRNLFEYMLQVN 271 (562)
Q Consensus 202 ~~l~~~~~~~~~~~~---~~~~~~l~~l~~~~----~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~l~~i~~~~~~~~ 271 (562)
.++++....-|+.+. ...+.++..++..+ .. ....+.+..+.+|..++...+.+....+..+..+.- .
T Consensus 92 rII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~-~- 169 (315)
T 3qml_C 92 RVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYE-R- 169 (315)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHH-H-
T ss_pred HHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHc-c-
Confidence 999999998886543 22233444443322 11 223556666667766666653332222333333332 2
Q ss_pred CCCChhHHHHHhhhHHHhh
Q 008533 272 KDTDDDVALEACEFWHSYF 290 (562)
Q Consensus 272 ~~~~~~v~~~a~~~l~~~~ 290 (562)
...++.++..+++++..+-
T Consensus 170 ~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 170 NNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp TTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 2446777777777666554
No 146
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=80.66 E-value=34 Score=31.24 Aligned_cols=100 Identities=14% Similarity=0.018 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHHhhcch--hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCI--KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~--~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~ 483 (562)
...+..++.++..+..... +.+....+++++.+...+.+++..+|.++..++-+++...... + ..+...+++..
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~--~--~~~~~~~ll~~ 237 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD--H--NIEGKAQCLSL 237 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS--C--CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc--C--CchHHHHHHHH
Confidence 5567777777777766442 2334566778888888888889999999999999999876542 1 12233445555
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHHHHH
Q 008533 484 LLKRILD-TNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 484 l~~~l~d-~~~~vr~~a~~al~~l~~~ 509 (562)
+...+.. .++....++..||++++..
T Consensus 238 l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 238 ISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 5555543 4678888899999999853
No 147
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=80.47 E-value=35 Score=31.27 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=79.8
Q ss_pred HHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhh----hhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh--
Q 008533 394 IQAKLSASGDEAWKDREAAVLALGAIAEGCIKGL----YPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD-- 467 (562)
Q Consensus 394 l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~----~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-- 467 (562)
..+.++.+-..-+..|..-...|.++...|-..+ .+.+..++..++-.++++++.|-..++.++-.+...+...
T Consensus 124 TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~ 203 (321)
T 1w9c_A 124 TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEA 203 (321)
T ss_dssp HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChH
Confidence 3445554323348999999999999998886544 2456778889999999999999999999998888776420
Q ss_pred cCCCcchhhHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHH
Q 008533 468 IGHQNGREQFEKVLMGLLKRILDTN----KRVQEAACSAFATLEEE 509 (562)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~~----~~vr~~a~~al~~l~~~ 509 (562)
...+..+.|+-.++..++..+.|+. -..+.....-+-.+.+.
T Consensus 204 ~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ve~ 249 (321)
T 1w9c_A 204 AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEE 249 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHHHHc
Confidence 0112346778888888888888863 33344344444444443
No 148
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=79.95 E-value=14 Score=28.97 Aligned_cols=65 Identities=6% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcc
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAA 511 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~ 511 (562)
+.+...+..|+...+.+...+.|++.. ..+.+.++..+.+.+....+.-|....+.+..++.+++
T Consensus 7 ~~l~~~L~~L~~s~~sI~~~s~w~l~~--------------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 7 SALEKKLSELSNSQQSVQTLSLWLIHH--------------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHHHCCSSTTHHHHHHHHHHHT--------------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 344555667777778888888887643 33445666666666666666778899999999998874
No 149
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=79.76 E-value=14 Score=33.77 Aligned_cols=114 Identities=14% Similarity=0.034 Sum_probs=70.6
Q ss_pred HHHHHHhhhcCC-CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc-
Q 008533 433 EIVAFLIPLLDD-KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEA- 510 (562)
Q Consensus 433 ~~~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~- 510 (562)
.++..+...+.+ ..|..+..++.++.++...-.. ..........++..+...+.+++..+|.+++..+-++.-..
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g---~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~ 223 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG---QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH 223 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH---HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh---HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 455555566653 4577788888888888654221 01123345777877777777778999999999998887654
Q ss_pred cccccccHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHH
Q 008533 511 AEELAPRLEIILQHLMMAFGKY-QRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 511 ~~~~~~~l~~il~~L~~~l~~~-~~~~~~~~~~~l~~l~~ 549 (562)
+..-.+-...++..+..++... +.+.+-.++-|+|+++.
T Consensus 224 ~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 224 KDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred hcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 2111123344555555555443 33555577778887774
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.01 E-value=13 Score=32.26 Aligned_cols=78 Identities=6% Similarity=0.018 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHh
Q 008533 476 QFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQHLMMAFGKYQ-RRNLRIVYDAIGTLADAVG 552 (562)
Q Consensus 476 ~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~L~~~l~~~~-~~~~~~~~~~l~~l~~~~~ 552 (562)
.-...+..+.+.|++.++.++..|...|..++++|+..|...+ ..+++.|.+++.+.. ..++..+++.+..-+.+.+
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4457788888899999999999999999999999976554322 345555666655432 4555677777777776655
Q ss_pred h
Q 008533 553 F 553 (562)
Q Consensus 553 ~ 553 (562)
.
T Consensus 119 ~ 119 (220)
T 1dvp_A 119 S 119 (220)
T ss_dssp T
T ss_pred c
Confidence 3
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=79.00 E-value=19 Score=29.12 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHccccccccH--HHHHHH-HHHHHhh---hhhhHHHHHHHHHHHHH
Q 008533 476 QFEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEEAAEELAPRL--EIILQH-LMMAFGK---YQRRNLRIVYDAIGTLA 548 (562)
Q Consensus 476 ~~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~~~~~~~~~l--~~il~~-L~~~l~~---~~~~~~~~~~~~l~~l~ 548 (562)
.-...+..+.+.|+ ..++.++..|...|..++++|+..|...+ ..+++. |++++.. +...+++.+++.|..-+
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 44677888888997 47899999999999999999987665533 456666 5666642 22356667888887777
Q ss_pred HHHhh
Q 008533 549 DAVGF 553 (562)
Q Consensus 549 ~~~~~ 553 (562)
.+.+.
T Consensus 130 ~~f~~ 134 (157)
T 1elk_A 130 DAFRS 134 (157)
T ss_dssp HHHTT
T ss_pred HHcCC
Confidence 76653
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=75.73 E-value=60 Score=31.40 Aligned_cols=95 Identities=9% Similarity=0.031 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh--HHHHhhhcCCCcchhhHHHHHHH
Q 008533 407 KDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLMG 483 (562)
Q Consensus 407 ~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~il~~ 483 (562)
..-..-+.-+..+.+... ..+......++..+..++.++|..|-.+|+....+= ... ..++...+++.
T Consensus 299 ~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~l---------i~~n~~~IlPi 369 (449)
T 2npp_B 299 PKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSL---------ISDNAAKILPI 369 (449)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHH---------HHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHH---------HHhchhhhHHh
Confidence 333344456666776663 456677788889999999999999999998766542 222 23445566666
Q ss_pred HHHHhcc-----CCHHHHHHHHHHHHHHHHHc
Q 008533 484 LLKRILD-----TNKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 484 l~~~l~d-----~~~~vr~~a~~al~~l~~~~ 510 (562)
++..|.. -+..||..|..++..+.+.-
T Consensus 370 i~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d 401 (449)
T 2npp_B 370 MFPSLYRNSKTHWNKTIHGLIYNALKLFMEMN 401 (449)
T ss_dssp HHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHC
Confidence 6666532 26889999999998776654
No 153
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=73.98 E-value=9.4 Score=30.14 Aligned_cols=40 Identities=10% Similarity=0.005 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcc
Q 008533 127 AGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVL 166 (562)
Q Consensus 127 ~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~ 166 (562)
..++++++.|.+.+++.++.++.-+|.+|.+++..-+..+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f 84 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF 84 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH
Confidence 4579999999999999999999999999999998766554
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.50 E-value=24 Score=30.66 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~ 509 (562)
...+..|.+.+.+.+|.+...|+.++..+.+..+..+ +.+. -...++.|.+.++ .+++.|+..+...|..+...
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f----~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV----HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH----HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4467778888999999999999999999998876421 1111 1233333433333 35789999999999999988
Q ss_pred ccccc-cccHHHHHHHH
Q 008533 510 AAEEL-APRLEIILQHL 525 (562)
Q Consensus 510 ~~~~~-~~~l~~il~~L 525 (562)
.+... .+++..+.+.|
T Consensus 120 f~~~~~l~~i~~~Y~~L 136 (226)
T 3zyq_A 120 FRNEPKYKVVQDTYQIM 136 (226)
T ss_dssp TTTCGGGHHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHH
Confidence 74421 13344444443
No 155
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=73.48 E-value=1.2e+02 Score=33.88 Aligned_cols=113 Identities=12% Similarity=0.037 Sum_probs=76.9
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
...++.++.....++.+.++.++..|......++..+.... -.+++..++..+.+++..--..|+.++.
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~-----------qqeVl~~Lv~hi~sg~~~eVd~ALdvL~ 463 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC-----------QQEVVGALVTHVCSGTEAEVDTALDVLL 463 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH-----------HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh-----------HHHHHHHHHhhhcCCCcHHHHHHHHHHH
Confidence 46889999988899999999999999988888888775432 2455666655544455444555999999
Q ss_pred HHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 008533 206 QFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIE 250 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~ 250 (562)
.++...|..+.++ ..++..++..+.+-+..--+.++..|+.++-
T Consensus 464 ~L~~~~~~~l~~~-a~~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 464 ELIVLNASAMRLN-AAFVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHCHHHHHHT-HHHHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHhHH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 8887766655543 3456666665554444333445777777664
No 156
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=73.20 E-value=65 Score=30.61 Aligned_cols=112 Identities=9% Similarity=0.014 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHHhhcch-hhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHh--HHHHhhhcCCCcchhhHHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCI-KGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRF--SKFIVQDIGHQNGREQFEKVLM 482 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~-~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~il~ 482 (562)
...-..-+.-+..+.+... ..+......++..+..++.++|..|-.+|+....+= ...+.+ .....++-+++
T Consensus 265 s~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~-----n~~~IlPii~p 339 (403)
T 3fga_B 265 SPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD-----NAAKILPIMFP 339 (403)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT-----THHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH-----hHHHHHHHHHH
Confidence 3444444555667777663 556777788888999999999999999998766442 222211 12333444444
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHHHHHccccccccHHHHH
Q 008533 483 GLLKRILD-TNKRVQEAACSAFATLEEEAAEELAPRLEIIL 522 (562)
Q Consensus 483 ~l~~~l~d-~~~~vr~~a~~al~~l~~~~~~~~~~~l~~il 522 (562)
.+.+..+. -+..||..+..++..+.+.-+..+.......-
T Consensus 340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~ 380 (403)
T 3fga_B 340 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFK 380 (403)
T ss_dssp HHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 44443332 37999999999999888877777776665543
No 157
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=72.87 E-value=15 Score=31.75 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=55.8
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD 443 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~ 443 (562)
.|.+....+.+++.+....+ ..+.+.+.+...|++. |..|.+....+.. .+ ..+.+.+++.+-..+.
T Consensus 103 nWd~~D~~a~~~~~~~~~~~----~~~~~~i~~W~~s~~~--w~rR~ai~~~l~~-----~~--~~~~~~~~~i~~~~~~ 169 (220)
T 2b6c_A 103 WWDSVDAWRKFFGSWVALHL----TELPTIFALFYGAENF--WNRRVALNLQLML-----KE--KTNQDLLKKAIIYDRT 169 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHSG----GGHHHHHHHHTTCSSH--HHHHHHHHTTTTC-----GG--GCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHcCCCH--HHHHHHHHHHHHH-----HH--CCCHHHHHHHHHHhCC
Confidence 57654443333333332222 1355777888887763 6666665543321 11 2345666777777889
Q ss_pred CCChhHHHHHHHHHHHhHHHHh
Q 008533 444 DKFPLIRSISCWTLSRFSKFIV 465 (562)
Q Consensus 444 d~~~~vr~~a~~~l~~l~~~~~ 465 (562)
|++..|+.+..|+|..+++..+
T Consensus 170 d~~~yV~kavgW~Lr~~~k~~~ 191 (220)
T 2b6c_A 170 TEEFFIQKAIGWSLRQYSKTNP 191 (220)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCH
T ss_pred ChHHHHHHHHHHHHHHHHhhCH
Confidence 9999999999999999987543
No 158
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=72.31 E-value=17 Score=31.76 Aligned_cols=74 Identities=7% Similarity=-0.028 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHH-HHhhcchhh-hhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHH
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALG-AIAEGCIKG-LYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFI 464 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~-~i~~~~~~~-~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 464 (562)
+...+.+.+...|++. |..|. |+.+-+ .++....+. -..+++.++..+...+.|++..|+.+..|+|..++...
T Consensus 107 ~~~~~~~~~W~~s~~~--w~rR~-ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 107 NIAQDVADKWIASGDE--LKMSA-GWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp SSHHHHHHHHHHSCCH--HHHHH-HHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHcCcHH--HHHHH-HHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 3566777888888772 55554 444211 112212121 14567778888888999999999999999999998864
No 159
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=70.19 E-value=57 Score=28.70 Aligned_cols=185 Identities=15% Similarity=0.143 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-----------cCCChHHHHHHHHhhc------c--CCCHHHHHHHHHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYS-----------QFPDFNNYLAFILARA------E--GKSVEIRQAAGLLL 75 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~-----------~~~~~~~~l~~il~~~------~--~~~~~~R~~a~~~l 75 (562)
+++.+.+..+.+|+ .|..|...|-+-. ..++.+..|++-+.+- + +.....|--.+..|
T Consensus 3 ~~i~qli~~L~~p~---~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaL 79 (268)
T 2fv2_A 3 EKIYQWINELSSPE---TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALAL 79 (268)
T ss_dssp HHHHHHHHHTSSTT---THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch---hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHH
Confidence 56778888888888 7888988886633 3455555555544331 0 11234455555555
Q ss_pred HHHHHHhhccCChhhHH-HHHHHHh----hhhh--C---CchHHHHHHHHHHHHHHHhcCcC--c---hHHHHHHHHHHh
Q 008533 76 KNNLRTAYKSMSPSNQQ-YIKSELL----PCLG--A---ADRHIRSTVGTIVSVVVQLGGIA--G---WLELLQALVTCL 140 (562)
Q Consensus 76 k~~i~~~w~~l~~~~~~-~i~~~ll----~~l~--~---~~~~vr~~~~~~i~~i~~~~~~~--~---w~~ll~~l~~~l 140 (562)
=..+..| ++.+. .++..+. ..|. + +-+.+|-..-.+||.+++.+.++ . ..+++|.....+
T Consensus 80 lQcvAsh-----petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 80 LQCVASH-----PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHC-----TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHcC-----cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 5555543 33343 3443333 3333 2 24789999999999999876432 1 256788888888
Q ss_pred ccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc--chhHhhHHHH-HHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE--CPINIFLPRL-LQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 141 ~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~--~~~~~il~~l-~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
..++...+..|..++..|..+-..- .+.-.-.+ ..+..++... .+...++++.+.+..+.|...+..
T Consensus 155 e~GselSKtvAtfIlqKIL~dd~GL--~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLDDTGL--AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHSHHHH--HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHHHHhccchhH--HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 8888888888888888777543221 00000000 0122222222 233345666677777777766654
No 160
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=69.80 E-value=53 Score=28.22 Aligned_cols=129 Identities=12% Similarity=-0.030 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHhhhhh-CCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHh
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQYIKSELLPCLG-AADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCL 140 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~i~~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l 140 (562)
+..-+.|.+|+.++....+ .+.++.... +-..+. -.+..+-...|.+++.++...+. .+.+.+..++
T Consensus 66 s~~~E~r~la~~~l~~~~~----~~~~~~l~~----~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----~~~~~i~~W~ 133 (220)
T 2b6c_A 66 KTEREYQYVAIDLALQNVQ----RFSLEEVVA----FKAYVPQKAWWDSVDAWRKFFGSWVALHLT----ELPTIFALFY 133 (220)
T ss_dssp SSSHHHHHHHHHHHHHTGG----GCCHHHHHH----GGGGTTTTCSHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHh----hCCHHHHHH----HHHHhccCCcHHHHHHHHHHHHHHHHHChH----HHHHHHHHHH
Confidence 4568889999988775432 233332221 122333 35778888888778888765321 2456688899
Q ss_pred ccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHH
Q 008533 141 DSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALF 216 (562)
Q Consensus 141 ~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~ 216 (562)
.|++.-+|..|+..+. +. .. +.....+++.+...+.+++.-|+++.-.+|..+....|+...
T Consensus 134 ~s~~~w~rR~ai~~~l------~~-~~-------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 134 GAENFWNRRVALNLQL------ML-KE-------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp TCSSHHHHHHHHHTTT------TC-GG-------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cCCCHHHHHHHHHHHH------HH-HH-------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 9999988888876541 11 11 113466677777788999999999999999998877665443
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.05 E-value=36 Score=29.30 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhh-HHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Q 008533 432 SEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQ-FEKVLMGLLKRIL-DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 432 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~il~~l~~~l~-d~~~~vr~~a~~al~~l~~~ 509 (562)
...+..|.+.+.+.+|.+...|+.++..+.+..+..+ +.+. -...++.+.+.++ ..+..||..+...+......
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f----~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPV----HEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHH----HHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3466778888899999999999999999998875421 1110 1224444444443 34689999999999999888
Q ss_pred ccccc-cccHHHHHHHH
Q 008533 510 AAEEL-APRLEIILQHL 525 (562)
Q Consensus 510 ~~~~~-~~~l~~il~~L 525 (562)
.+... ..++...++.|
T Consensus 117 f~~~~~~~~i~~~y~~L 133 (220)
T 1dvp_A 117 FRSSDKYQAIKDTMTIL 133 (220)
T ss_dssp TTTCSSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHH
Confidence 75422 12344444433
No 162
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=68.51 E-value=37 Score=26.97 Aligned_cols=57 Identities=7% Similarity=0.080 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcccc----ccccHHHHHHHHHHHHh
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEE----LAPRLEIILQHLMMAFG 530 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~----~~~~l~~il~~L~~~l~ 530 (562)
..+...++..+.+.+....+.-|..+.+.+..++.+++.. ..+|.+.+...|..++.
T Consensus 37 ~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~ 97 (145)
T 3d9j_A 37 IKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQ 97 (145)
T ss_dssp GGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHH
Confidence 4566777777777777667888999999999999988542 23555555555555443
No 163
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=67.27 E-value=44 Score=26.30 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=53.9
Q ss_pred HHHHHHhhh---ccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcC-----CC
Q 008533 374 ALDVLSNVF---GDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLD-----DK 445 (562)
Q Consensus 374 ~l~~l~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~-----d~ 445 (562)
.+..|++.. ....+..++++|...+++.+ |.++.-||.+|-.++....+.+...+..=+..|..+.. |+
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~---~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp 107 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKS---PIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDP 107 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSS---HHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCT
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCC---cceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCc
Confidence 444455443 23556799999999999987 99999999999998866555544333332233322221 21
Q ss_pred ------ChhHHHHHHHHHHHhH
Q 008533 446 ------FPLIRSISCWTLSRFS 461 (562)
Q Consensus 446 ------~~~vr~~a~~~l~~l~ 461 (562)
...||..|-.++.-+.
T Consensus 108 ~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 108 LKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHh
Confidence 1578888876665443
No 164
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=65.02 E-value=50 Score=26.14 Aligned_cols=74 Identities=5% Similarity=-0.033 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccccccHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 008533 474 REQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEELAPRLE-IILQHLMMAFGKYQRRNLRIVYDAIGTL 547 (562)
Q Consensus 474 ~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~~~~l~-~il~~L~~~l~~~~~~~~~~~~~~l~~l 547 (562)
..+.+.++..+.+.+....+.-+..+.+.+..++++++..+..++. .+.+.+.......++..+..+.+.+.+=
T Consensus 38 ~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 38 ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777777777777778999999999999999999754443332 2333333444333444444555555443
No 165
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=63.09 E-value=6.5 Score=34.54 Aligned_cols=120 Identities=10% Similarity=0.023 Sum_probs=77.3
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHccccc
Q 008533 435 VAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDTNKRVQEAACSAFATLEEEAAEEL 514 (562)
Q Consensus 435 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~~vr~~a~~al~~l~~~~~~~~ 514 (562)
.+.+..-..|++..+|..|...-+.+...+. ........+..++..+...++|+...|+-++.++|..+...-++..
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~---~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~ 186 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRK---DNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH 186 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSC---GGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhcc---ccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH
Confidence 4455666778999999988873322211111 0112456788889988889999999999999999988877654333
Q ss_pred cccHHHHHHHHHHHHhhhh-h-----hHHHHHHHHHHHHHHHHhhhhhccccCC
Q 008533 515 APRLEIILQHLMMAFGKYQ-R-----RNLRIVYDAIGTLADAVGFELNQVLLSC 562 (562)
Q Consensus 515 ~~~l~~il~~L~~~l~~~~-~-----~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 562 (562)
..++ .. ...+.... . -....+.+-|....+.-+-++.+.|.+|
T Consensus 187 ~~al----~~-~~~l~~~~~~~~~~~~~~~~A~~~i~~~~~~~~~~~~~~~~~~ 235 (235)
T 1t06_A 187 EKAV----EI-AKEVGIVEVKRDNKKSSLLNASESIQKELDRGRLGFKRKYVRC 235 (235)
T ss_dssp HHHH----HH-HHHHCEEEEEETTEEEEEEEHHHHHHHHHHTTCTTCCCCCCCC
T ss_pred HHHH----HH-HHHhccccCCCCCCCCCCCChHHHHHHHHHhccccccccCCCC
Confidence 3333 22 22222211 1 1233677888887777777788888888
No 166
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=62.61 E-value=59 Score=26.16 Aligned_cols=91 Identities=7% Similarity=0.111 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHcC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHH-HhhhcC---CCChhHHHHHHHHHHHh
Q 008533 388 PTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAF-LIPLLD---DKFPLIRSISCWTLSRF 460 (562)
Q Consensus 388 ~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~-l~~~l~---d~~~~vr~~a~~~l~~l 460 (562)
...+..+...+++ .+ +.+..-|+..|-.++.+|+..+...+ ..++.. +...+. +++..||..++..+..+
T Consensus 52 k~a~ral~krl~~~~n---~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 52 KDALRAVKKRIVGNKN---FHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCC---HHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 4667778888874 56 88899999999999999876553222 123333 333332 45568999999999999
Q ss_pred HHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 461 SKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
+..+... ..-.++..++..|-
T Consensus 129 ~~~f~~~----p~l~~i~~~Y~~Lk 149 (157)
T 1elk_A 129 ADAFRSS----PDLTGVVTIYEDLR 149 (157)
T ss_dssp HHHHTTC----TTCHHHHHHHHHHH
T ss_pred HHHcCCC----cchHHHHHHHHHHH
Confidence 9887531 12344555555443
No 167
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=59.01 E-value=65 Score=25.47 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=59.3
Q ss_pred cCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 126 IAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 126 ~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
.+.-..++..+.+.+....|..+..+|.++..|++..+..+... ....+.+.+.......+..+|....+.+.
T Consensus 38 ~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~-------F~~~l~~~f~~~~~~~d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 38 ISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIY-------FSRNLFNLYKRTYLLVDNTTRTKLINMFK 110 (144)
T ss_dssp GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHH-------HHTTHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHH-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567888888888888889999999999999999887654321 23345555566666678899999999999
Q ss_pred HHHhh
Q 008533 206 QFIML 210 (562)
Q Consensus 206 ~~~~~ 210 (562)
.+-..
T Consensus 111 ~W~~~ 115 (144)
T 1sz9_A 111 LWLNP 115 (144)
T ss_dssp HHTSG
T ss_pred HHhCc
Confidence 88755
No 168
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.80 E-value=1.3e+02 Score=28.48 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=68.4
Q ss_pred HHHHhhccCChhhHHHHHHHHhhhhhCCc-hHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHH
Q 008533 78 NLRTAYKSMSPSNQQYIKSELLPCLGAAD-RHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALS 156 (562)
Q Consensus 78 ~i~~~w~~l~~~~~~~i~~~ll~~l~~~~-~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~ 156 (562)
.+...-..+.++.+..+...|+.+.+.+. ..--..++.|+......++ .--..++..+.+.-=-++..-...-+.-+.
T Consensus 243 IIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp-~L~~~vi~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 243 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS-TLTEPVVMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp HHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCG-GGHHHHHHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 33333234556667767777777665432 2233467777777777663 222334444444332233333344556666
Q ss_pred HHhhcchhcccccCCCCCcchhHhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 008533 157 KICEDIPQVLDSDVPGLAECPINIFLPRLLQFFQSPHTSLRKLSLGSVN 205 (562)
Q Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vr~~al~~l~ 205 (562)
.+++..+..- +.+....++..+.+++++++..|-+.|+..+.
T Consensus 322 eiLe~~~~~~-------f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 322 EILDVIEPSE-------FVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHTCCHHH-------HHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHhCCHHH-------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 6666654421 12355667777788888899889888876654
No 169
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=56.82 E-value=97 Score=26.79 Aligned_cols=153 Identities=9% Similarity=0.031 Sum_probs=86.1
Q ss_pred hhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhc-cCChhHHhHH-HHHHHHHhhcchhcccccCCCCCcchh
Q 008533 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLD-SNDINHMEGA-MDALSKICEDIPQVLDSDVPGLAECPI 178 (562)
Q Consensus 101 ~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~-~~~~~~~~~a-l~~l~~i~~~~~~~~~~~~~~~~~~~~ 178 (562)
+..++....|-.+...+....+... ++-++.+...+. -+++.+.... -.+++.++...+.
T Consensus 69 L~~~~~~E~r~~ai~~l~~~~k~~~----~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~-------------- 130 (232)
T 3jxy_A 69 LWDLPEREFQAAALDIMQKYKKHIN----ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE-------------- 130 (232)
T ss_dssp HHTSSBHHHHHHHHHHHHHTGGGCC----GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG--------------
T ss_pred HhcCcHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH--------------
Confidence 3344444466555554442222111 222333334443 3466665543 3455555554332
Q ss_pred HhhHHHHHHhhcCCCHHHHHHHHHHHHHHHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCccchhh
Q 008533 179 NIFLPRLLQFFQSPHTSLRKLSLGSVNQFIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRPSFLEP 258 (562)
Q Consensus 179 ~~il~~l~~~l~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 258 (562)
.+.+.+.....+++.-+|..|+.++..+. .......++..+.....+++.-+++++-..|..+....++.+.+
T Consensus 131 -~~~~~l~~W~~s~~~w~rR~ai~~~l~~~------~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~ 203 (232)
T 3jxy_A 131 -LISAYIPKWIASDNIWLQRAAILFQLKYK------QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWE 203 (232)
T ss_dssp -GGGGTHHHHHHSSCHHHHHHHHHTTTTCG------GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -HHHHHHHHHhcCCchHHHHHHHHHHHHHH------hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 13445777888999999998877653221 11223334444555667788889999999999998888887766
Q ss_pred hHHHHHHHHHhhcCCCChhHHHHHhhhHH
Q 008533 259 HLRNLFEYMLQVNKDTDDDVALEACEFWH 287 (562)
Q Consensus 259 ~l~~i~~~~~~~~~~~~~~v~~~a~~~l~ 287 (562)
++.. ..-++-+...|++-+.
T Consensus 204 fl~~---------~~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 204 YVQN---------NELAPLSKREAIKHIK 223 (232)
T ss_dssp HHHH---------SCCCHHHHHHHTTTTH
T ss_pred HHHH---------CCCCHHHHHHHHHhcc
Confidence 6653 1223445555665543
No 170
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=55.75 E-value=1.5e+02 Score=28.78 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=45.3
Q ss_pred CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 008533 445 KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEK--VLMGLLKRILDTNKRVQEAACSAFATLEE 508 (562)
Q Consensus 445 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--il~~l~~~l~d~~~~vr~~a~~al~~l~~ 508 (562)
.+|.+...||.=||.++.+.|. ....+++ .=..++..+.++++.||..|..|+..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~------gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPE------SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcc------hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999998764 2333332 34556677888999999999999998764
No 171
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.20 E-value=70 Score=24.67 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=61.4
Q ss_pred CCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHH----HHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLA----FILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~----~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
|..+....+..++...++.... ++|...++++.. |.|...+. ..... ..++..|...+.+|+......
T Consensus 2 p~eel~kki~~ll~EY~~~~D~---~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE--~~~~~~~e~~~~LL~~L~~~~-- 73 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEV-PHFHHELVYEAIVMVLE--STGESAFKMILDLLKSLWKSS-- 73 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHTC-GGGHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHhCC-CccHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHCC--
Confidence 5566666777777777665533 788888888753 44433222 22221 334577888888888876542
Q ss_pred cCChhhHHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHh
Q 008533 85 SMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~ 123 (562)
-++.++...=-..++..+.| .-|.....++..++.....
T Consensus 74 ~is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~ 115 (129)
T 2nsz_A 74 TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 115 (129)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHC
Confidence 35544433222344444443 3455666666666666554
No 172
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=52.99 E-value=1.2e+02 Score=26.69 Aligned_cols=115 Identities=11% Similarity=0.091 Sum_probs=63.3
Q ss_pred HhhHHHHHHhhcCC--CHHHHHHHHHHHHHHHhhchhhHHhchH--HHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC--
Q 008533 179 NIFLPRLLQFFQSP--HTSLRKLSLGSVNQFIMLMPSALFVSMD--QYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-- 252 (562)
Q Consensus 179 ~~il~~l~~~l~~~--~~~vr~~al~~l~~~~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-- 252 (562)
.-++-++++.-+.. .+.+|..++..++.++....+....++- .+++.++.....+++-.+.-+.-.+.++....
T Consensus 99 plyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~G 178 (268)
T 2fv2_A 99 PLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTG 178 (268)
T ss_dssp GGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHH
T ss_pred hHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchh
Confidence 33333444444433 3579999999999999865443333221 35566666555555555555555555544321
Q ss_pred -------ccchhhhHHHHHHHHHhhcCCCChhHHHHHhhhHHHhhccc
Q 008533 253 -------PSFLEPHLRNLFEYMLQVNKDTDDDVALEACEFWHSYFEAQ 293 (562)
Q Consensus 253 -------~~~~~~~l~~i~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 293 (562)
++.|.....-+-.++....++++..+....+.+...+++.+
T Consensus 179 L~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 179 LAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 22222222222233334456677777777888888887763
No 173
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=44.51 E-value=2.6e+02 Score=28.21 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCc-chhHhhHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 008533 129 WLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAE-CPINIFLPRLLQFF-QSPHTSLRKLSLGSVNQ 206 (562)
Q Consensus 129 w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~l-~~~~~~vr~~al~~l~~ 206 (562)
|+.-+..+..+++++.......|+..+..+.......-.+. ...+ .....+.+.+...+ ..++..+|..|+.++..
T Consensus 315 f~~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~--~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~ 392 (596)
T 4f52_E 315 LQFNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLY--QYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQL 392 (596)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCG--GGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCCh--hhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 45556678888888888888889999888888776532211 0000 12233344444433 35788999999999999
Q ss_pred HHhhchhhHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhC-------ccchhhhHHHHHHHHHhh
Q 008533 207 FIMLMPSALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVR-------PSFLEPHLRNLFEYMLQV 270 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-------~~~~~~~l~~i~~~~~~~ 270 (562)
++...|+.-. -.++..+++.. ..+.++..++..+-.-+... +.+.++++-.++..++..
T Consensus 393 ~I~~~~~e~R---~~iL~~LL~~~--~~~~v~~~lI~~~KdeI~~al~~~~~~~~F~~~~l~~ll~~vl~l 458 (596)
T 4f52_E 393 YINKLDSQGK---YTLFRCLLNTS--NHSGVEAFIIQNIKNQIDMSLKRTRNNKWFTGPQLISLLDLVLFL 458 (596)
T ss_dssp HHHHBCHHHH---HHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHTCCC----CTTTSHHHHHHHHHHSCC
T ss_pred HHHhCChHHH---HHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcC
Confidence 9987765321 13355554433 23556555555554432221 234455555555555443
No 174
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.11 E-value=1.2e+02 Score=24.16 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=59.1
Q ss_pred CCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHH----HHHhhccCCCHHHHHHHHHHHHHHHHHhhc
Q 008533 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLA----FILARAEGKSVEIRQAAGLLLKNNLRTAYK 84 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~----~il~~~~~~~~~~R~~a~~~lk~~i~~~w~ 84 (562)
|..+....+..+|...++.... ++|...++++.. |.|...+. ..... ..++..|...+.+|+......
T Consensus 4 ~~eel~kki~~lL~EY~~~~D~---~EA~~cl~EL~~-p~f~~e~V~~~i~~alE--~~~~~~re~~~~LL~~L~~~~-- 75 (152)
T 2ion_A 4 PVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEV-PHFHHELVYEAIVMVLE--STGESAFKMILDLLKSLWKSS-- 75 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHTC-GGGHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHhCC-CcchHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHCC--
Confidence 4455556677777777665533 778888888753 44433222 22221 334677888888888876542
Q ss_pred cCChhhHHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHh
Q 008533 85 SMSPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~ 123 (562)
-++.++...=-..++..+.| .-|.....++..++.....
T Consensus 76 ~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~~ai~~ 117 (152)
T 2ion_A 76 TITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 117 (152)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHHHHHHC
Confidence 34544433222334444433 2455555566665555543
No 175
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=43.81 E-value=1.1e+02 Score=24.31 Aligned_cols=106 Identities=12% Similarity=0.127 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhccchhhhhHHHHHHHHcC-CCCCCchhHHHHHHHHHHHhhcchhhhhhhH--HHHHHH-HhhhcCC--
Q 008533 371 SAAALDVLSNVFGDEILPTLMPVIQAKLSA-SGDEAWKDREAAVLALGAIAEGCIKGLYPHL--SEIVAF-LIPLLDD-- 444 (562)
Q Consensus 371 a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l--~~~~~~-l~~~l~d-- 444 (562)
..+..+.+...- ..-...+..+...+++ .+ ..+..-|+..|-.++.+|+..+...+ ..++.- +...+.+
T Consensus 37 ileicD~In~~~--~~pkeA~ral~KRl~~~~n---~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~ 111 (152)
T 3rru_A 37 FMHICDIINTTQ--DGPKDAVKALKKRISKNYN---HKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRY 111 (152)
T ss_dssp HHHHHHHHHHST--THHHHHHHHHHHHHTTCCB---HHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGG
T ss_pred HHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCC---hHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCC
Confidence 344444444322 2234667778888874 34 67667789999999999986553332 133432 4444443
Q ss_pred -CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHH
Q 008533 445 -KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLL 485 (562)
Q Consensus 445 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~ 485 (562)
.+..||..++..+..++..++.. ....++..++..|.
T Consensus 112 ~~~~~Vk~kil~li~~Wa~~F~~~----p~l~~i~~~Y~~Lk 149 (152)
T 3rru_A 112 NLPLDIQNRILNFIKTWSQGFPGG----VDVSEVKEVYLDLV 149 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCSSS----CCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHH
Confidence 23479999999999999877531 23455666665553
No 176
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=43.67 E-value=1.2e+02 Score=23.87 Aligned_cols=65 Identities=22% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHc
Q 008533 433 EIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRILDT--NKRVQEAACSAFATLEEEA 510 (562)
Q Consensus 433 ~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~--~~~vr~~a~~al~~l~~~~ 510 (562)
+.+...+..|++....|.....|++. +..+.+.++..+.+.+... .+.-|....+.+..++.++
T Consensus 6 ~~l~~kL~~L~~sq~sIq~~s~W~l~--------------h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqns 71 (142)
T 2km4_A 6 EQFTTKLNTLEDSQESISSASKWLLL--------------QYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQA 71 (142)
T ss_dssp HHHHHHHHTCCSCHHHHHHHHHHHHT--------------CGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHH
Confidence 34455667777777778887777763 2445677777788888765 5677888899999999887
Q ss_pred c
Q 008533 511 A 511 (562)
Q Consensus 511 ~ 511 (562)
+
T Consensus 72 k 72 (142)
T 2km4_A 72 K 72 (142)
T ss_dssp G
T ss_pred h
Confidence 3
No 177
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=43.57 E-value=1.1e+02 Score=23.69 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=70.8
Q ss_pred cCChhhHHHHHHHHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchh
Q 008533 85 SMSPSNQQYIKSELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQ 164 (562)
Q Consensus 85 ~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~ 164 (562)
.++.+....+...|+..|+|.+.-+...++..+..+- +.++|.+.+.++++|..= -..++..+...++.
T Consensus 23 ~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~--------~~l~p~I~~vl~s~D~~W---~ywil~~lv~~~~~ 91 (134)
T 3ut4_A 23 KLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ--------SIAMPHILTILQGNDIMW---KYWVIKLMIPYLIY 91 (134)
T ss_dssp TCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH--------HHHHHHHHHHHHSSCHHH---HHHHHHHHGGGCCH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc--------HhhHHHHHHHHHcCChHH---HHHHHHHHHHcCCH
Confidence 3566677778889999999999887776666665432 478888999888776422 24556666666554
Q ss_pred cccccCCCCCcchhHhhHHHHHHhhcCC-----CHHHHHHHHHHHHHH
Q 008533 165 VLDSDVPGLAECPINIFLPRLLQFFQSP-----HTSLRKLSLGSVNQF 207 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~vr~~al~~l~~~ 207 (562)
. ....+.+.+.+...++ ..++...|-+.+..+
T Consensus 92 ~-----------~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 P-----------NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp H-----------HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred H-----------HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3 3567888888888775 346777777777665
No 178
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=43.23 E-value=42 Score=26.90 Aligned_cols=101 Identities=10% Similarity=0.137 Sum_probs=64.8
Q ss_pred hhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhcc-CChhHHhHHHHHHHHHhhcchhcccccCCCCCcchhH
Q 008533 101 CLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDS-NDINHMEGAMDALSKICEDIPQVLDSDVPGLAECPIN 179 (562)
Q Consensus 101 ~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~-~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~~~~ 179 (562)
.+.++++..--.+|..|.. . +..-.+.+..|.+.++. .++.+...||.+|..+++.++..|..++. ..
T Consensus 28 ~l~~~Dw~~ileicD~In~----~-~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eia------sk 96 (152)
T 3rru_A 28 GVQTEDWGQFMHICDIINT----T-QDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIV------KK 96 (152)
T ss_dssp SCCSCCHHHHHHHHHHHHH----S-TTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHS------SH
T ss_pred CCCCccHHHHHHHHHHHhC----C-CccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHH------hh
Confidence 3344566544444444332 2 23345677888888874 57777788999999999999987643211 13
Q ss_pred hhHHH-HHHhhcC---CCHHHHHHHHHHHHHHHhhch
Q 008533 180 IFLPR-LLQFFQS---PHTSLRKLSLGSVNQFIMLMP 212 (562)
Q Consensus 180 ~il~~-l~~~l~~---~~~~vr~~al~~l~~~~~~~~ 212 (562)
.++.. +.+.+.. ....||..++..+..+....+
T Consensus 97 ~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 97 EFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 44443 4455543 345799999999999987543
No 179
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=40.50 E-value=1.5e+02 Score=24.07 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---CCChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhh
Q 008533 14 FNEICRLLEQQISPSSTADKSQIWQQLQQYSQ---FPDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSN 90 (562)
Q Consensus 14 ~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~---~~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~ 90 (562)
......++...++.... ++|...++++.. .|.|+..++.... +..+..|.+++.+|.... . .-+++++
T Consensus 10 ~kk~~~ii~EYf~~~D~---~Ea~~~l~eL~~p~~~~~~V~~~I~~al---drk~~ere~~s~LL~~L~-~--~~ls~~~ 80 (165)
T 2rg8_A 10 EKTLTPIIQEYFEHGDT---NEVAEMLRDLNLGEMKSGVPVLAVSLAL---EGKASHREMTSKLLSDLC-G--TVMSTTD 80 (165)
T ss_dssp HHHHHHHHHHHHHHCCH---HHHHHHHHHHTCSGGGGHHHHHHHHHHH---TSCHHHHHHHHHHHHHHB-T--TTBCHHH
T ss_pred HHHHHHHHHHHHcCCCH---HHHHHHHHHhCCcccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHH-H--CCCCHHH
Confidence 34455556665555433 677888887753 2334444444333 567888999999988862 2 4456554
Q ss_pred HHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHhc
Q 008533 91 QQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQLG 124 (562)
Q Consensus 91 ~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~~ 124 (562)
...=-..++..+.| .-|.+-..++..++..+..+
T Consensus 81 i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d~ 117 (165)
T 2rg8_A 81 VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDG 117 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhChhhcccccchHHHHHHHHHHHHHcC
Confidence 43323344444444 35666777777777777654
No 180
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=38.50 E-value=2.5e+02 Score=26.20 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=76.3
Q ss_pred hhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhc
Q 008533 389 TLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDI 468 (562)
Q Consensus 389 ~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 468 (562)
.+..++...+. . |..|..++-.+..++.... ...++..++... +.+..+..+..+++++.++...-.
T Consensus 165 ~l~~~~~~i~~--~---Wp~~FP~LDLLRl~v~~~~--~~~~l~~li~~~---~~~~~~~n~MltlR~laNlF~~~~--- 231 (362)
T 3l3f_X 165 LLLSFANTIRS--N---WEIKTPAYDIVRLIVKKLP--YSSDIKDYIEEG---LGNKNITLTMLTVRILVNCFNNEN--- 231 (362)
T ss_dssp HHHHHHHHHHH--H---CSCCHHHHHHHHHHGGGCS--CGGGGHHHHHHH---TTCSSHHHHHHHHHHHHHHTTCTT---
T ss_pred HHHHHHHHHHh--h---CCccchHHHHHHHHhcCCC--hHHHHHHHHHHh---cCCCChhHHHHHHHHHHHhccCcc---
Confidence 34444444443 3 7788888888887776543 123344444333 335578888888888877765311
Q ss_pred CCCcchhhH--HHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHHHHc-cccccccHHHHHHHHHHHHh-------
Q 008533 469 GHQNGREQF--EKVLMGLLKRIL--------DTNKRVQEAACSAFATLEEEA-AEELAPRLEIILQHLMMAFG------- 530 (562)
Q Consensus 469 ~~~~~~~~~--~~il~~l~~~l~--------d~~~~vr~~a~~al~~l~~~~-~~~~~~~l~~il~~L~~~l~------- 530 (562)
.....+ +.+...++..+. ..+..+|.+++..+-++.-.. +.... ..++..+...+.
T Consensus 232 ---~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E 305 (362)
T 3l3f_X 232 ---WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLE 305 (362)
T ss_dssp ---THHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSH
T ss_pred ---hHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccc
Confidence 001111 112233343331 124678888888887776543 22111 223334444444
Q ss_pred --hhhhhHHHHHHHHHHHHHH
Q 008533 531 --KYQRRNLRIVYDAIGTLAD 549 (562)
Q Consensus 531 --~~~~~~~~~~~~~l~~l~~ 549 (562)
..+.+..-.++-|+|+++.
T Consensus 306 ~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 306 EYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHTSHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHh
Confidence 1244556678888888874
No 181
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=37.33 E-value=1.4e+02 Score=22.93 Aligned_cols=101 Identities=7% Similarity=-0.004 Sum_probs=63.3
Q ss_pred HHhhhhhCCchHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHhccCChhHHhHHHHHHHHHhhcchhcccccCCCCCcc
Q 008533 97 ELLPCLGAADRHIRSTVGTIVSVVVQLGGIAGWLELLQALVTCLDSNDINHMEGAMDALSKICEDIPQVLDSDVPGLAEC 176 (562)
Q Consensus 97 ~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~w~~ll~~l~~~l~~~~~~~~~~al~~l~~i~~~~~~~~~~~~~~~~~~ 176 (562)
..++.|.++.+.|.....-++.+ ...-++++..+.+.+....+..|...+.++..++......... .+..
T Consensus 12 ~~L~~L~~s~~sI~~~s~w~l~h------~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~----~f~~ 81 (132)
T 4flb_A 12 RKFQSVTNTMESIQGLSSWCIEN------KKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAI----IFRE 81 (132)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHT------GGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCT----HHHH
T ss_pred HHHHHCcccHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChH----HHHH
Confidence 34455666667777666555543 2345677888888888888889999999999999876432111 1112
Q ss_pred hhHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 008533 177 PINIFLPRLLQFFQSPHTSLRKLSLGSVNQFIM 209 (562)
Q Consensus 177 ~~~~il~~l~~~l~~~~~~vr~~al~~l~~~~~ 209 (562)
.+...++.++.... +++.|....+++..+-.
T Consensus 82 ~f~~~l~~~~~~~~--~~~~~~kl~~ll~iW~~ 112 (132)
T 4flb_A 82 SFADVLPEAAALVK--DPSVSKSVERIFKIWED 112 (132)
T ss_dssp HHHTTHHHHHHTTC--STTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHhcc
Confidence 34455555555443 34567777777776654
No 182
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=37.18 E-value=1.5e+02 Score=23.32 Aligned_cols=89 Identities=8% Similarity=-0.013 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchh-------hhhhhHHHHHHHHhhhc
Q 008533 370 CSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIK-------GLYPHLSEIVAFLIPLL 442 (562)
Q Consensus 370 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~-------~~~~~l~~~~~~l~~~l 442 (562)
.....|..++..-- .....+...+.+.+.... +..|-.+++.+-.|+..... .+.+.+...++.++..+
T Consensus 24 ~~I~~LT~~a~~~~-~~~~~IV~~~~~~i~k~~---~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~ 99 (145)
T 3d9j_A 24 AKMTQITKAAIKAI-KFYKHVVQSVEKFIQKCK---PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL 99 (145)
T ss_dssp HHHHHHHHHHHHTG-GGHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC---ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHH
Confidence 34555555554322 234567777777776656 88999999999999987764 33444434444333333
Q ss_pred CCCChhHHHHHHHHHHHhHH
Q 008533 443 DDKFPLIRSISCWTLSRFSK 462 (562)
Q Consensus 443 ~d~~~~vr~~a~~~l~~l~~ 462 (562)
....+..|.....++.-+-+
T Consensus 100 ~~~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 100 YRCPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp TSSCGGGHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhcC
Confidence 34458888888777777764
No 183
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=36.30 E-value=1.3e+02 Score=28.09 Aligned_cols=133 Identities=9% Similarity=0.051 Sum_probs=78.3
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch--hhhhhh---HHHHHHHH
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYPH---LSEIVAFL 438 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~--~~~~~~---l~~~~~~l 438 (562)
.|..+-.+.+.++.+....+. -..+..++...+.+.. ...+.-++.++..+..... ..+... ...++..+
T Consensus 176 ~Wp~~FP~LDLLRl~v~~~~~--~~~l~~li~~~~~~~~---~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 250 (362)
T 3l3f_X 176 NWEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEGLGNKN---ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 250 (362)
T ss_dssp HCSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred hCCccchHHHHHHHHhcCCCh--HHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHH
Confidence 466566677777666654432 1234444544444333 7888888888888776432 222211 23445555
Q ss_pred hhhcC----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Q 008533 439 IPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL---------DTNKRVQEAACSAFAT 505 (562)
Q Consensus 439 ~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~---------d~~~~vr~~a~~al~~ 505 (562)
...+. ..+..+|.++..++=+++...... + ... .++..+..++. ..++...-+++-|||+
T Consensus 251 ~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~-~--~~~----el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGt 323 (362)
T 3l3f_X 251 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG-N--SDL----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGN 323 (362)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHT-C--SCT----THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc-c--chH----HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHH
Confidence 44442 236789999999999998876532 1 111 22333333333 2367888899999999
Q ss_pred HHH
Q 008533 506 LEE 508 (562)
Q Consensus 506 l~~ 508 (562)
++.
T Consensus 324 L~~ 326 (362)
T 3l3f_X 324 LAT 326 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 184
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=34.78 E-value=1.7e+02 Score=27.93 Aligned_cols=133 Identities=9% Similarity=0.047 Sum_probs=77.6
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch--hhhhh---hHHHHHHHH
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGLYP---HLSEIVAFL 438 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~--~~~~~---~l~~~~~~l 438 (562)
.|..+-.+.+.+..+....+. ...+..++...+.+.. ...+.-++.++..+..... ..+.. ....++..+
T Consensus 239 ~WP~~FPaLDLLRl~v~~p~~--~~~l~~li~~~l~~~~---~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 313 (425)
T 3pst_A 239 NWEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEGLGNKN---ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 313 (425)
T ss_dssp HCSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHS
T ss_pred hCCcccHHHHHHHHHHcCCch--HHHHHHHHHHhcCCCC---hhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHH
Confidence 455456666666666554432 1234445555544333 7888888888888776432 22221 133445544
Q ss_pred hhhcC----CCChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHH
Q 008533 439 IPLLD----DKFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL---------DTNKRVQEAACSAFAT 505 (562)
Q Consensus 439 ~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~---------d~~~~vr~~a~~al~~ 505 (562)
...+. ..+..+|.++..++=+++...... + ... .++..+..++. ..++...-+++-|||+
T Consensus 314 ~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~-~--~~~----el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGt 386 (425)
T 3pst_A 314 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG-N--SDL----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGN 386 (425)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS-C--SCT----THHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcc-c--chH----HHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHH
Confidence 44432 236789999999999998876532 1 111 22333333333 2367788889999999
Q ss_pred HHH
Q 008533 506 LEE 508 (562)
Q Consensus 506 l~~ 508 (562)
++.
T Consensus 387 Lv~ 389 (425)
T 3pst_A 387 LAT 389 (425)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 185
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=33.77 E-value=1.6e+02 Score=26.60 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=58.8
Q ss_pred chhHHHHHHHHHHHhhcchh--hhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhhcCC--CcchhhHHHHH
Q 008533 406 WKDREAAVLALGAIAEGCIK--GLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQDIGH--QNGREQFEKVL 481 (562)
Q Consensus 406 ~~~r~aal~~l~~i~~~~~~--~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~~~~~il 481 (562)
+..-+.|+-.|-.+++...- .+..+--.++..++ +.....+.+|..|..+||.-...-|+.+.. .....++..++
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 44445555555555554421 12221122333333 223345678888877777655433322100 01234555555
Q ss_pred HHHHHHhccC---CHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHH
Q 008533 482 MGLLKRILDT---NKRVQEAACSAFATLEEEAAEELAPRLEIILQHLMMAFGKY--QRRNLRIVYDAIGTLA 548 (562)
Q Consensus 482 ~~l~~~l~d~---~~~vr~~a~~al~~l~~~~~~~~~~~l~~il~~L~~~l~~~--~~~~~~~~~~~l~~l~ 548 (562)
+.+...+..+ ...++.+-..+|..++... ..|..+- +..|.+++... +...++.+++.|..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F~~~~---m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDLPIYS---TVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--CC---HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhhhhcc---HHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 5554433322 2233444444444444332 3344432 23333333333 4444555555554433
No 186
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.46 E-value=2.8e+02 Score=24.30 Aligned_cols=138 Identities=9% Similarity=0.038 Sum_probs=79.7
Q ss_pred hhcHhhhHHHHHHHHHhhhccchhhhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcch--hhh-hhh--HHHHHHHH
Q 008533 364 VWNLRKCSAAALDVLSNVFGDEILPTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCI--KGL-YPH--LSEIVAFL 438 (562)
Q Consensus 364 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~--~~~-~~~--l~~~~~~l 438 (562)
.|..+-.+.+.+..+....+. -..+..++...+.+.+ +..+.-++.+++.+..... ..+ ... ...++..+
T Consensus 67 ~WP~~fP~lDllRl~~~~~~~--~~~l~~~l~~~~~~~~---~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i 141 (253)
T 3gae_A 67 NWEIKTPAYDIVRLIVKKLPY--SSDIKDYIEEGLGNKN---ITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 141 (253)
T ss_dssp HCSCCHHHHHHHHHHGGGCSC--GGGGHHHHHHHTTCSS---HHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred hCCccchHHHHHHHHHcCCch--HHHHHHHHHHhcCCCc---hhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHH
Confidence 455455566666666554432 1233334444444333 7888889999988876442 222 222 34455555
Q ss_pred hhhcCC----CChhHHHHHHHHHHHhHHHHhhhcCCCcchhhHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHHHHH
Q 008533 439 IPLLDD----KFPLIRSISCWTLSRFSKFIVQDIGHQNGREQFEKVLMGLLKRIL-----DTNKRVQEAACSAFATLEEE 509 (562)
Q Consensus 439 ~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~-----d~~~~vr~~a~~al~~l~~~ 509 (562)
...+.+ ++..+|.++..++-+++...... ....+....++..+...+. ..++....++..|+|+++..
T Consensus 142 ~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~---~~~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 142 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---NSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTS---CSCTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCchhHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 555544 36789999999999999876532 1112233333333332111 12567778899999999864
No 187
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.85 E-value=2.8e+02 Score=25.18 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHHH-Hhhc-cCCCHHHHHHHHHHHHHHHHHhhccC
Q 008533 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAFI-LARA-EGKSVEIRQAAGLLLKNNLRTAYKSM 86 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~i-l~~~-~~~~~~~R~~a~~~lk~~i~~~w~~l 86 (562)
|..+....+..+|...++.... ++|...++++.. |.|...+... +... ...++..|...+.+|+...... -+
T Consensus 161 ~~eelkkki~~lL~EY~~~~D~---~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~--~l 234 (307)
T 2zu6_B 161 SVNHLVKEIDMLLKEYLLSGDI---SEAEHCLKELEV-PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSS--TI 234 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC--SS
T ss_pred CHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHcCC-CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC--CC
Confidence 3344445555666665554433 678888888764 3443322221 1111 1334677888888888887553 35
Q ss_pred ChhhHHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHh
Q 008533 87 SPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~ 123 (562)
+.++...=-..++..+.+ .-|.....++..++.....
T Consensus 235 s~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ai~~ 274 (307)
T 2zu6_B 235 TVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 274 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 554433222344444443 2466666666666666654
No 188
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.98 E-value=2.5e+02 Score=22.66 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHcCCCCCCchhHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhhcCCCChhHHHHHHHHHHHhHHHHhhh
Q 008533 388 PTLMPVIQAKLSASGDEAWKDREAAVLALGAIAEGCIKGLYPHLSEIVAFLIPLLDDKFPLIRSISCWTLSRFSKFIVQD 467 (562)
Q Consensus 388 ~~l~~~l~~~l~~~~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~~~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 467 (562)
..+.+.+.+++.+.| -..++.++..+.. + .+.+.++..++..--|.+..-|..+...+..+...+
T Consensus 11 kk~~~ii~EYf~~~D------~~Ea~~~l~eL~~--p----~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~~~--- 75 (165)
T 2rg8_A 11 KTLTPIIQEYFEHGD------TNEVAEMLRDLNL--G----EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTV--- 75 (165)
T ss_dssp HHHHHHHHHHHHHCC------HHHHHHHHHHHTC--S----GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBTTT---
T ss_pred HHHHHHHHHHHcCCC------HHHHHHHHHHhCC--c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHCC---
Confidence 345566777777666 3445555555432 1 234445555555545778888999988888874321
Q ss_pred cCCCcchhhHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHH
Q 008533 468 IGHQNGREQFEKVLMGLLKRILDT---NKRVQEAACSAFATLEE 508 (562)
Q Consensus 468 ~~~~~~~~~~~~il~~l~~~l~d~---~~~vr~~a~~al~~l~~ 508 (562)
.....+..-+..++..+.|- .|.+....+..+++.+.
T Consensus 76 ----ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiarav~ 115 (165)
T 2rg8_A 76 ----MSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVG 115 (165)
T ss_dssp ----BCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHHHHH
Confidence 23444444444555444442 46666656665555543
No 189
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.26 E-value=2e+02 Score=25.22 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh-cc---CChhhHHHHHHHHhhhhhC----CchHHHHHHHHHHHHHHHhcCc-CchHHH
Q 008533 62 GKSVEIRQAAGLLLKNNLRTAY-KS---MSPSNQQYIKSELLPCLGA----ADRHIRSTVGTIVSVVVQLGGI-AGWLEL 132 (562)
Q Consensus 62 ~~~~~~R~~a~~~lk~~i~~~w-~~---l~~~~~~~i~~~ll~~l~~----~~~~vr~~~~~~i~~i~~~~~~-~~w~~l 132 (562)
+.++..+.++...+-|.+.+.+ .. .+...+..+.+.+...+.+ ++..+|-.++..+-.++..... ..-.++
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 3478899999999999887654 32 2332233334444333332 3667888888888877765311 111334
Q ss_pred HHHHHHHhc---------cCChhHHhHHHHHHHHHhhc
Q 008533 133 LQALVTCLD---------SNDINHMEGAMDALSKICED 161 (562)
Q Consensus 133 l~~l~~~l~---------~~~~~~~~~al~~l~~i~~~ 161 (562)
...+.+.+. ..++.....++.++|.++..
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 444444443 13667888899999998863
No 190
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=23.04 E-value=4.2e+02 Score=24.88 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHhhchh-hHHhchHHHHHHHhhhccCCCHHHHHHHHHHHHHHHhhCc-cc-hhhhHHHH------
Q 008533 193 HTSLRKLSLGSVNQFIMLMPS-ALFVSMDQYLQGLFLLSNDPSAEVRKLVCAAFNLLIEVRP-SF-LEPHLRNL------ 263 (562)
Q Consensus 193 ~~~vr~~al~~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~l~~~~~-~~-~~~~l~~i------ 263 (562)
+......+++|+..++..-.. ...-.-+..+..+...+....+.++..+++.|..++.... +. ....++.+
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Q ss_pred -----HHHHHhhcCC-CChhHHHHHhhhHHHhhcc
Q 008533 264 -----FEYMLQVNKD-TDDDVALEACEFWHSYFEA 292 (562)
Q Consensus 264 -----~~~~~~~~~~-~~~~v~~~a~~~l~~~~~~ 292 (562)
+..++..+.. .+.+....++.++..+...
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
No 191
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=22.20 E-value=1.4e+02 Score=17.91 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChH
Q 008533 17 ICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFN 50 (562)
Q Consensus 17 l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~ 50 (562)
|.+++..+.||... .+-.+.|.-++.+|..+
T Consensus 3 LqqLl~tlksp~sp---~qqqqvl~ILksnPqLM 33 (47)
T 1zoq_C 3 LQDLLRTLKSPSSP---QQQQQVLNILKSNPQLM 33 (47)
T ss_dssp HHHHHHTCCSCCCH---HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcCCCCH---HHHHHHHHHHHcCHHHH
Confidence 45566666677665 23334445555555543
No 192
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.61 E-value=4.4e+02 Score=24.48 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCChHHHHHH-HHhh-ccCCCHHHHHHHHHHHHHHHHHhhccC
Q 008533 9 PQEQGFNEICRLLEQQISPSSTADKSQIWQQLQQYSQFPDFNNYLAF-ILAR-AEGKSVEIRQAAGLLLKNNLRTAYKSM 86 (562)
Q Consensus 9 ~~~~~~~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~~~~~~~l~~-il~~-~~~~~~~~R~~a~~~lk~~i~~~w~~l 86 (562)
|..+....+..+|...++... .++|.+.+.++.. |.|...+.. .+.. -...+...|...+.+|+...... -+
T Consensus 212 ~veelkkki~~lL~EY~~s~D---~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g--ll 285 (358)
T 3eiq_C 212 PVNHLVKEIDMLLKEYLLSGD---ISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS--TI 285 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT--CS
T ss_pred cHHHHHHHHHHHHHHhccCCC---HHHHHHHHHHccC-CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC--CC
Confidence 444455556666666665543 3778888888764 444332222 1111 01334566777777777776552 34
Q ss_pred ChhhHHHHHHHHhhhhhC---CchHHHHHHHHHHHHHHHh
Q 008533 87 SPSNQQYIKSELLPCLGA---ADRHIRSTVGTIVSVVVQL 123 (562)
Q Consensus 87 ~~~~~~~i~~~ll~~l~~---~~~~vr~~~~~~i~~i~~~ 123 (562)
+.++...=-..++..+.+ .-|.....++..++.....
T Consensus 286 s~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~ 325 (358)
T 3eiq_C 286 TIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQA 325 (358)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHC
Confidence 443332222233333333 2455555566666655543
No 193
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.49 E-value=2.9e+02 Score=21.10 Aligned_cols=82 Identities=15% Similarity=0.100 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcC-CChHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHhhccCChhhHHH
Q 008533 15 NEICRLLEQQISPSSTADKSQIWQQLQQYSQF-PDFNNYLAFILARAEGKSVEIRQAAGLLLKNNLRTAYKSMSPSNQQY 93 (562)
Q Consensus 15 ~~l~~~l~~~~s~d~~~~r~~A~~~L~~~~~~-~~~~~~l~~il~~~~~~~~~~R~~a~~~lk~~i~~~w~~l~~~~~~~ 93 (562)
+.|.+.|..+. +..+ ..+.+...+.+.... ++.+..+..-+.. . ++. +.++...|-+.|.++-..-.++....
T Consensus 7 ~~l~~~L~~L~-~s~~-sI~~~s~w~l~~~~~a~~iv~~i~~~l~~--~-~~~-~KL~~LYLindIl~ns~~~~~~y~~~ 80 (135)
T 4fu3_A 7 SALEKKLSELS-NSQQ-SVQTLSLWLIHHRKHAGPIVSVWHRELRK--A-KSN-RKLTFLYLANDVIQNSKRKGPEFTRE 80 (135)
T ss_dssp HHHHHHHHHCC-SSTT-HHHHHHHHHHHTGGGHHHHHHHHHHHHHH--S-CTT-THHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHHHcc-ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-ccc-hhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55677777654 4444 555555555554432 3345555555553 2 222 55777777777655444333444444
Q ss_pred HHHHHhhhh
Q 008533 94 IKSELLPCL 102 (562)
Q Consensus 94 i~~~ll~~l 102 (562)
+...|..++
T Consensus 81 f~~~l~~~~ 89 (135)
T 4fu3_A 81 FESVLVDAF 89 (135)
T ss_dssp HHTTHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
Done!