Query 008534
Match_columns 562
No_of_seqs 495 out of 3319
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 13:22:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 1.4E-67 3E-72 590.6 38.7 381 147-559 23-406 (613)
2 PLN03211 ABC transporter G-25; 100.0 7.2E-66 1.6E-70 581.8 48.4 387 147-555 37-451 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-62 3.8E-67 552.5 41.2 365 168-556 36-406 (617)
4 PLN03140 ABC transporter G fam 100.0 4.4E-61 9.6E-66 578.8 43.3 382 145-555 863-1260(1470)
5 KOG0065 Pleiotropic drug resis 100.0 1.1E-62 2.4E-67 563.4 27.1 373 150-556 788-1169(1391)
6 KOG0058 Peptide exporter, ABC 100.0 1.7E-64 3.6E-69 552.4 9.8 363 8-385 313-691 (716)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-60 3.6E-65 574.8 45.2 375 149-555 759-1142(1394)
8 TIGR00956 3a01205 Pleiotropic 100.0 1E-60 2.2E-65 576.6 39.5 371 169-554 73-465 (1394)
9 PLN03140 ABC transporter G fam 100.0 3.4E-58 7.4E-63 553.8 37.6 367 169-553 177-581 (1470)
10 COG1126 GlnQ ABC-type polar am 100.0 5.5E-56 1.2E-60 425.9 25.0 218 149-384 2-224 (240)
11 KOG0055 Multidrug/pheromone ex 100.0 9.6E-55 2.1E-59 498.8 16.5 364 8-385 196-576 (1228)
12 COG1125 OpuBA ABC-type proline 100.0 1.4E-52 2.9E-57 410.0 22.6 220 149-385 1-225 (309)
13 COG1135 AbcC ABC-type metal io 100.0 3.1E-52 6.7E-57 418.2 22.9 222 149-384 1-230 (339)
14 KOG0055 Multidrug/pheromone ex 100.0 2.4E-53 5.3E-58 487.2 12.1 359 9-385 834-1213(1228)
15 COG2274 SunT ABC-type bacterio 100.0 3.3E-53 7.2E-58 477.8 12.9 362 10-386 320-697 (709)
16 KOG0065 Pleiotropic drug resis 100.0 1E-51 2.2E-56 473.4 24.4 366 169-553 127-503 (1391)
17 COG1127 Ttg2A ABC-type transpo 100.0 2E-50 4.3E-55 392.9 23.2 221 148-385 7-235 (263)
18 COG3839 MalK ABC-type sugar tr 100.0 2.2E-50 4.9E-55 417.2 24.6 218 149-385 3-223 (338)
19 COG1131 CcmA ABC-type multidru 100.0 4.7E-50 1E-54 413.1 26.9 222 149-389 4-230 (293)
20 COG3842 PotA ABC-type spermidi 100.0 1.2E-50 2.7E-55 421.2 22.6 233 148-406 4-239 (352)
21 COG1116 TauB ABC-type nitrate/ 100.0 3.3E-50 7.2E-55 395.7 22.9 204 149-372 3-207 (248)
22 COG1120 FepC ABC-type cobalami 100.0 2.5E-50 5.4E-55 402.8 21.9 220 149-384 2-227 (258)
23 COG1136 SalX ABC-type antimicr 100.0 3.2E-49 6.9E-54 387.8 25.6 210 150-374 2-220 (226)
24 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-49 6.7E-54 393.2 24.2 219 148-385 3-227 (254)
25 COG1132 MdlB ABC-type multidru 100.0 9.5E-51 2.1E-55 453.6 13.1 356 8-385 177-552 (567)
26 COG3638 ABC-type phosphate/pho 100.0 3E-49 6.4E-54 383.8 20.2 223 149-386 3-238 (258)
27 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.7E-50 5.8E-55 459.4 14.8 351 10-385 302-673 (686)
28 TIGR00958 3a01208 Conjugate Tr 100.0 1.2E-50 2.7E-55 463.5 11.5 354 9-385 327-702 (711)
29 PRK11174 cysteine/glutathione 100.0 5E-50 1.1E-54 449.5 15.9 215 149-385 349-572 (588)
30 COG1118 CysA ABC-type sulfate/ 100.0 7.3E-49 1.6E-53 393.1 20.8 220 149-385 2-227 (345)
31 PRK13537 nodulation ABC transp 100.0 6.9E-48 1.5E-52 399.5 28.5 220 148-386 6-228 (306)
32 PTZ00265 multidrug resistance 100.0 4.5E-50 9.8E-55 485.1 13.0 354 15-385 1015-1452(1466)
33 COG4555 NatA ABC-type Na+ tran 100.0 6.6E-49 1.4E-53 372.5 17.7 220 149-386 1-223 (245)
34 TIGR02314 ABC_MetN D-methionin 100.0 9.9E-48 2.1E-52 403.3 28.4 221 149-384 1-229 (343)
35 COG2884 FtsE Predicted ATPase 100.0 1.6E-48 3.5E-53 367.0 19.8 213 149-379 1-220 (223)
36 COG1117 PstB ABC-type phosphat 100.0 1.6E-48 3.4E-53 373.1 19.0 232 148-404 6-248 (253)
37 TIGR03375 type_I_sec_LssB type 100.0 1.2E-49 2.7E-54 454.5 12.8 358 9-386 311-689 (694)
38 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.4E-49 3.1E-54 455.0 13.3 354 10-385 320-700 (710)
39 TIGR03265 PhnT2 putative 2-ami 100.0 1.9E-47 4.2E-52 403.1 28.1 218 149-385 4-224 (353)
40 PRK11650 ugpC glycerol-3-phosp 100.0 2.2E-47 4.8E-52 403.1 28.2 218 149-384 3-223 (356)
41 TIGR01193 bacteriocin_ABC ABC- 100.0 1.8E-49 3.8E-54 454.1 12.7 356 9-385 321-697 (708)
42 PRK11176 lipid transporter ATP 100.0 2.7E-49 5.8E-54 443.0 13.9 358 9-385 191-567 (582)
43 PRK11432 fbpC ferric transport 100.0 2.8E-47 6.1E-52 401.4 28.1 217 149-384 6-225 (351)
44 cd03261 ABC_Org_Solvent_Resist 100.0 3.1E-47 6.8E-52 379.5 26.7 217 150-384 1-225 (235)
45 TIGR03258 PhnT 2-aminoethylpho 100.0 5.9E-47 1.3E-51 400.3 28.0 218 149-385 5-228 (362)
46 PRK13536 nodulation factor exp 100.0 1E-46 2.2E-51 395.7 28.6 220 148-386 40-262 (340)
47 COG1122 CbiO ABC-type cobalt t 100.0 4.6E-47 1E-51 377.7 24.3 218 149-385 3-228 (235)
48 KOG0057 Mitochondrial Fe/S clu 100.0 5.1E-49 1.1E-53 418.3 10.1 222 147-385 349-574 (591)
49 PRK09452 potA putrescine/sperm 100.0 1.4E-46 3E-51 399.0 28.5 218 148-384 13-233 (375)
50 PRK10851 sulfate/thiosulfate t 100.0 1.5E-46 3.3E-51 396.3 28.4 220 149-384 2-225 (353)
51 PRK11160 cysteine/glutathione 100.0 8E-49 1.7E-53 438.7 11.8 354 9-385 187-562 (574)
52 COG1124 DppF ABC-type dipeptid 100.0 5E-47 1.1E-51 370.5 22.1 221 149-385 3-231 (252)
53 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-46 4E-51 370.3 26.1 215 150-383 1-219 (220)
54 TIGR01288 nodI ATP-binding ABC 100.0 2.4E-46 5.3E-51 387.4 28.2 218 149-385 4-224 (303)
55 PRK11607 potG putrescine trans 100.0 3E-46 6.5E-51 396.9 29.4 219 148-385 18-239 (377)
56 TIGR01842 type_I_sec_PrtD type 100.0 2.7E-48 5.9E-53 431.9 13.6 355 11-385 169-542 (544)
57 TIGR00960 3a0501s02 Type II (G 100.0 1.7E-46 3.8E-51 369.3 24.8 209 149-374 1-216 (216)
58 PRK11153 metN DL-methionine tr 100.0 3E-46 6.5E-51 393.1 28.2 221 149-384 1-229 (343)
59 cd03259 ABC_Carb_Solutes_like 100.0 2.1E-46 4.7E-51 367.9 25.0 210 150-378 1-213 (213)
60 cd03219 ABC_Mj1267_LivG_branch 100.0 3E-46 6.4E-51 372.3 26.2 219 150-384 1-231 (236)
61 TIGR01846 type_I_sec_HlyB type 100.0 4.5E-48 9.7E-53 441.6 14.1 356 10-385 305-680 (694)
62 PRK11000 maltose/maltodextrin 100.0 4.3E-46 9.4E-51 395.3 28.2 217 149-384 3-222 (369)
63 PRK13643 cbiO cobalt transport 100.0 7.5E-46 1.6E-50 381.2 29.1 234 149-397 1-248 (288)
64 cd03296 ABC_CysA_sulfate_impor 100.0 5.2E-46 1.1E-50 371.8 27.0 220 149-384 2-225 (239)
65 cd03258 ABC_MetN_methionine_tr 100.0 5.2E-46 1.1E-50 370.1 26.2 220 150-384 2-229 (233)
66 cd03218 ABC_YhbG The ABC trans 100.0 5.4E-46 1.2E-50 369.5 26.2 216 150-384 1-221 (232)
67 PRK13637 cbiO cobalt transport 100.0 1.2E-45 2.7E-50 379.4 29.2 222 149-385 2-234 (287)
68 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.6E-46 1.4E-50 366.4 26.1 216 150-381 1-219 (220)
69 cd03269 ABC_putative_ATPase Th 100.0 4.8E-46 1E-50 364.6 24.8 210 150-378 1-210 (210)
70 PRK10790 putative multidrug tr 100.0 8.5E-48 1.8E-52 431.9 13.9 350 10-385 192-563 (592)
71 cd03263 ABC_subfamily_A The AB 100.0 6.2E-46 1.3E-50 366.2 25.3 216 150-383 1-219 (220)
72 PRK10789 putative multidrug tr 100.0 9.1E-48 2E-52 429.8 13.6 354 10-385 164-538 (569)
73 cd03266 ABC_NatA_sodium_export 100.0 7.6E-46 1.6E-50 365.0 25.4 214 150-378 2-218 (218)
74 cd03260 ABC_PstB_phosphate_tra 100.0 5.2E-46 1.1E-50 368.6 24.1 217 150-382 1-226 (227)
75 TIGR02203 MsbA_lipidA lipid A 100.0 1.2E-47 2.5E-52 428.6 13.6 354 11-385 182-556 (571)
76 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-45 2.9E-50 381.6 27.7 218 149-386 2-222 (301)
77 cd03301 ABC_MalK_N The N-termi 100.0 1.1E-45 2.3E-50 362.8 25.4 210 150-378 1-213 (213)
78 COG3840 ThiQ ABC-type thiamine 100.0 2.2E-46 4.7E-51 350.2 19.3 214 150-384 2-218 (231)
79 cd03256 ABC_PhnC_transporter A 100.0 8.9E-46 1.9E-50 369.7 25.0 220 150-384 1-233 (241)
80 PRK11264 putative amino-acid A 100.0 1.7E-45 3.8E-50 370.0 27.0 218 149-384 3-232 (250)
81 TIGR01188 drrA daunorubicin re 100.0 8.5E-46 1.8E-50 383.2 25.5 207 169-386 5-214 (302)
82 PRK13634 cbiO cobalt transport 100.0 2.2E-45 4.7E-50 378.1 28.2 232 149-395 2-248 (290)
83 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.7E-45 3.6E-50 368.8 26.5 216 150-384 1-224 (242)
84 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-45 4.6E-50 367.5 27.1 218 149-384 1-224 (240)
85 cd03224 ABC_TM1139_LivF_branch 100.0 1.2E-45 2.5E-50 364.5 24.7 214 150-384 1-220 (222)
86 TIGR02315 ABC_phnC phosphonate 100.0 9.6E-46 2.1E-50 370.2 24.4 220 149-383 1-233 (243)
87 PRK13657 cyclic beta-1,2-gluca 100.0 2.7E-47 5.9E-52 427.5 14.6 355 10-385 183-558 (588)
88 PRK13647 cbiO cobalt transport 100.0 4.2E-45 9.2E-50 373.0 29.0 217 149-383 4-225 (274)
89 PRK11831 putative ABC transpor 100.0 3.2E-45 6.9E-50 372.8 27.6 218 149-384 7-232 (269)
90 PRK13631 cbiO cobalt transport 100.0 6.2E-45 1.3E-49 379.5 30.0 233 148-395 20-278 (320)
91 PRK13650 cbiO cobalt transport 100.0 3.6E-45 7.9E-50 374.5 27.8 219 149-384 4-228 (279)
92 PRK09536 btuD corrinoid ABC tr 100.0 2.3E-45 4.9E-50 392.3 27.0 220 149-384 3-227 (402)
93 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-45 4.1E-50 362.2 23.8 209 150-374 1-218 (218)
94 cd03268 ABC_BcrA_bacitracin_re 100.0 2.4E-45 5.3E-50 359.2 23.9 206 150-378 1-208 (208)
95 PRK13651 cobalt transporter AT 100.0 6.9E-45 1.5E-49 376.8 28.4 221 149-384 2-253 (305)
96 TIGR01186 proV glycine betaine 100.0 3.4E-45 7.3E-50 386.5 26.5 206 169-385 5-219 (363)
97 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.4E-45 2E-49 362.1 28.1 217 149-385 1-221 (236)
98 TIGR00972 3a0107s01c2 phosphat 100.0 7.3E-45 1.6E-49 365.2 27.4 216 149-384 1-231 (247)
99 TIGR02673 FtsE cell division A 100.0 4.4E-45 9.6E-50 358.6 25.0 207 149-373 1-214 (214)
100 PRK13636 cbiO cobalt transport 100.0 9.6E-45 2.1E-49 372.1 28.1 218 149-385 5-231 (283)
101 PRK10619 histidine/lysine/argi 100.0 1E-44 2.3E-49 366.3 27.8 218 149-384 5-240 (257)
102 PRK10895 lipopolysaccharide AB 100.0 6.4E-45 1.4E-49 364.2 25.9 218 149-384 3-225 (241)
103 PRK11629 lolD lipoprotein tran 100.0 1.1E-44 2.3E-49 361.0 27.3 216 149-380 5-229 (233)
104 PRK15079 oligopeptide ABC tran 100.0 1E-44 2.2E-49 379.5 28.3 228 148-384 7-250 (331)
105 PRK13646 cbiO cobalt transport 100.0 8.9E-45 1.9E-49 372.9 27.3 222 149-385 2-235 (286)
106 COG1137 YhbG ABC-type (unclass 100.0 1.7E-46 3.7E-51 355.7 13.4 219 149-384 4-227 (243)
107 PRK11614 livF leucine/isoleuci 100.0 6.5E-45 1.4E-49 363.3 25.4 215 149-384 5-225 (237)
108 cd03264 ABC_drug_resistance_li 100.0 5.1E-45 1.1E-49 357.7 23.8 208 150-378 1-211 (211)
109 cd03292 ABC_FtsE_transporter F 100.0 7E-45 1.5E-49 357.0 24.5 207 150-374 1-214 (214)
110 PRK11124 artP arginine transpo 100.0 1.4E-44 3E-49 361.9 27.2 216 149-383 2-228 (242)
111 PRK14247 phosphate ABC transpo 100.0 1.8E-44 3.9E-49 362.9 28.0 224 149-384 3-233 (250)
112 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-44 2.7E-49 364.6 26.8 217 150-384 1-235 (252)
113 PRK14268 phosphate ABC transpo 100.0 1.7E-44 3.7E-49 365.1 27.7 222 148-384 11-241 (258)
114 cd03234 ABCG_White The White s 100.0 1.4E-44 3.1E-49 358.5 26.7 221 149-378 3-226 (226)
115 TIGR01978 sufC FeS assembly AT 100.0 1.3E-44 2.8E-49 361.8 26.5 220 150-383 1-232 (243)
116 TIGR02868 CydC thiol reductant 100.0 8.7E-47 1.9E-51 418.3 11.9 323 12-355 183-529 (529)
117 PRK13641 cbiO cobalt transport 100.0 1.5E-44 3.3E-49 371.3 27.7 221 149-384 2-233 (287)
118 PRK14242 phosphate transporter 100.0 1.9E-44 4E-49 363.4 27.7 224 147-384 4-236 (253)
119 KOG0056 Heavy metal exporter H 100.0 2E-47 4.3E-52 398.7 6.3 344 18-385 394-761 (790)
120 PRK13638 cbiO cobalt transport 100.0 2E-44 4.3E-49 367.3 27.9 217 149-384 1-224 (271)
121 PRK13635 cbiO cobalt transport 100.0 2E-44 4.3E-49 369.0 28.0 219 149-385 5-229 (279)
122 TIGR01192 chvA glucan exporter 100.0 1.5E-46 3.3E-51 421.2 13.5 354 11-385 184-558 (585)
123 PRK14273 phosphate ABC transpo 100.0 2.1E-44 4.6E-49 363.4 27.7 219 148-384 6-237 (254)
124 COG0411 LivG ABC-type branched 100.0 2.6E-45 5.7E-50 358.6 20.0 220 149-384 4-238 (250)
125 PRK14267 phosphate ABC transpo 100.0 2.9E-44 6.4E-49 361.9 28.1 224 149-384 4-236 (253)
126 TIGR03411 urea_trans_UrtD urea 100.0 2.2E-44 4.7E-49 360.4 27.0 219 149-384 2-230 (242)
127 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-46 3.2E-51 420.3 12.3 353 9-385 184-563 (576)
128 PRK09473 oppD oligopeptide tra 100.0 3.5E-44 7.5E-49 375.4 29.2 227 148-384 11-250 (330)
129 PRK11022 dppD dipeptide transp 100.0 3.1E-44 6.7E-49 375.2 28.8 227 149-384 3-242 (326)
130 cd03257 ABC_NikE_OppD_transpor 100.0 2E-44 4.4E-49 356.8 25.7 215 150-378 2-228 (228)
131 PRK11248 tauB taurine transpor 100.0 2.5E-44 5.5E-49 363.7 26.9 213 149-381 1-216 (255)
132 PRK10908 cell division protein 100.0 2.3E-44 5.1E-49 355.8 25.9 209 150-376 2-217 (222)
133 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-44 2.4E-49 368.9 24.2 215 151-384 26-249 (269)
134 cd03262 ABC_HisP_GlnQ_permease 100.0 1.5E-44 3.2E-49 354.4 24.2 207 150-374 1-213 (213)
135 PRK13644 cbiO cobalt transport 100.0 2.5E-44 5.4E-49 367.4 26.7 217 149-384 1-223 (274)
136 PRK13548 hmuV hemin importer A 100.0 2.7E-44 5.7E-49 364.0 26.6 217 149-384 2-229 (258)
137 PRK10070 glycine betaine trans 100.0 2.9E-44 6.2E-49 383.6 28.1 203 171-384 42-253 (400)
138 PRK11300 livG leucine/isoleuci 100.0 3.2E-44 7E-49 361.9 26.8 220 149-384 5-242 (255)
139 TIGR02211 LolD_lipo_ex lipopro 100.0 2.4E-44 5.2E-49 355.1 25.4 210 150-375 2-220 (221)
140 PRK13639 cbiO cobalt transport 100.0 5.2E-44 1.1E-48 365.1 28.6 217 149-384 1-225 (275)
141 cd03226 ABC_cobalt_CbiO_domain 100.0 1.1E-44 2.4E-49 353.9 22.6 202 151-375 1-205 (205)
142 PRK13649 cbiO cobalt transport 100.0 5.6E-44 1.2E-48 365.5 28.7 221 149-384 2-233 (280)
143 PRK11308 dppF dipeptide transp 100.0 5.3E-44 1.1E-48 373.6 29.0 227 149-385 5-244 (327)
144 PRK14245 phosphate ABC transpo 100.0 5.6E-44 1.2E-48 359.5 27.7 222 149-384 3-233 (250)
145 COG4988 CydD ABC-type transpor 100.0 5.6E-45 1.2E-49 392.5 21.8 216 147-385 318-543 (559)
146 PRK13652 cbiO cobalt transport 100.0 5.1E-44 1.1E-48 365.6 27.8 218 149-385 3-227 (277)
147 PRK11247 ssuB aliphatic sulfon 100.0 2.9E-44 6.3E-49 363.7 25.6 208 148-381 11-219 (257)
148 PRK13648 cbiO cobalt transport 100.0 8.3E-44 1.8E-48 362.3 29.1 218 149-384 7-230 (269)
149 PRK13633 cobalt transporter AT 100.0 6.4E-44 1.4E-48 365.4 28.3 223 148-385 3-233 (280)
150 PRK10744 pstB phosphate transp 100.0 6.2E-44 1.4E-48 361.4 27.8 224 147-384 11-243 (260)
151 PRK09984 phosphonate/organopho 100.0 4.3E-44 9.2E-49 362.9 26.5 221 148-383 3-240 (262)
152 PRK15093 antimicrobial peptide 100.0 6E-44 1.3E-48 373.8 28.4 229 149-384 3-247 (330)
153 PRK14269 phosphate ABC transpo 100.0 5.5E-44 1.2E-48 358.9 26.9 223 149-384 2-229 (246)
154 cd03225 ABC_cobalt_CbiO_domain 100.0 2.2E-44 4.7E-49 353.0 23.3 206 151-373 1-211 (211)
155 PRK11231 fecE iron-dicitrate t 100.0 3.4E-44 7.5E-49 362.2 25.3 220 149-384 2-226 (255)
156 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-44 5.1E-49 357.5 23.6 212 150-383 1-219 (230)
157 TIGR02769 nickel_nikE nickel i 100.0 5.3E-44 1.1E-48 363.0 26.7 226 149-384 2-239 (265)
158 PRK13632 cbiO cobalt transport 100.0 5.6E-44 1.2E-48 364.1 26.9 219 148-384 6-230 (271)
159 COG4152 ABC-type uncharacteriz 100.0 6.7E-45 1.5E-49 353.9 18.9 220 149-387 2-221 (300)
160 cd03235 ABC_Metallic_Cations A 100.0 1.5E-44 3.2E-49 354.9 21.6 210 151-378 1-213 (213)
161 COG0410 LivF ABC-type branched 100.0 2.2E-44 4.7E-49 349.7 22.4 216 149-384 3-225 (237)
162 PRK13640 cbiO cobalt transport 100.0 1E-43 2.2E-48 364.3 28.6 220 149-385 5-232 (282)
163 PRK14256 phosphate ABC transpo 100.0 1E-43 2.2E-48 357.9 28.1 223 149-384 4-235 (252)
164 PRK10575 iron-hydroxamate tran 100.0 5.2E-44 1.1E-48 363.1 25.7 221 148-384 10-236 (265)
165 PRK14235 phosphate transporter 100.0 9.6E-44 2.1E-48 361.6 27.7 223 149-384 19-250 (267)
166 PRK14239 phosphate transporter 100.0 1.2E-43 2.7E-48 357.0 27.6 222 149-384 5-235 (252)
167 PRK14274 phosphate ABC transpo 100.0 1.2E-43 2.7E-48 358.9 27.6 222 149-384 12-242 (259)
168 PRK14241 phosphate transporter 100.0 1.3E-43 2.8E-48 358.6 27.5 223 149-384 4-241 (258)
169 TIGR03740 galliderm_ABC gallid 100.0 8.5E-44 1.8E-48 352.1 25.6 210 150-382 1-210 (223)
170 TIGR03873 F420-0_ABC_ATP propo 100.0 7.4E-44 1.6E-48 359.9 25.8 219 150-384 2-225 (256)
171 PRK10253 iron-enterobactin tra 100.0 6.8E-44 1.5E-48 362.2 25.5 220 149-384 7-232 (265)
172 PRK14237 phosphate transporter 100.0 1.7E-43 3.7E-48 359.8 28.4 224 147-384 18-250 (267)
173 TIGR00968 3a0106s01 sulfate AB 100.0 1E-43 2.3E-48 355.1 26.3 216 150-384 1-219 (237)
174 COG4175 ProV ABC-type proline/ 100.0 9.9E-45 2.1E-49 363.8 18.8 203 171-384 42-253 (386)
175 PRK10584 putative ABC transpor 100.0 1.2E-43 2.7E-48 351.9 26.4 214 148-377 5-227 (228)
176 cd03298 ABC_ThiQ_thiamine_tran 100.0 6.4E-44 1.4E-48 349.9 24.0 208 150-378 1-211 (211)
177 PRK14250 phosphate ABC transpo 100.0 1E-43 2.2E-48 356.0 25.5 212 149-384 3-220 (241)
178 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-43 3.4E-48 352.5 26.7 216 150-384 1-219 (232)
179 PRK13642 cbiO cobalt transport 100.0 2.1E-43 4.6E-48 361.0 28.2 219 149-384 4-228 (277)
180 PRK14240 phosphate transporter 100.0 2.2E-43 4.8E-48 354.9 27.7 222 149-384 3-233 (250)
181 PRK13645 cbiO cobalt transport 100.0 1.6E-43 3.5E-48 363.9 27.2 221 149-384 6-239 (289)
182 PRK11144 modC molybdate transp 100.0 1.2E-43 2.6E-48 374.6 26.7 207 150-384 2-217 (352)
183 PRK14270 phosphate ABC transpo 100.0 2.3E-43 5.1E-48 355.1 27.6 223 148-384 3-234 (251)
184 PRK14257 phosphate ABC transpo 100.0 2.7E-43 5.9E-48 368.4 28.9 224 148-384 79-312 (329)
185 COG4987 CydC ABC-type transpor 100.0 8E-45 1.7E-49 386.1 17.3 215 149-385 336-561 (573)
186 PTZ00265 multidrug resistance 100.0 1.7E-45 3.8E-50 445.3 13.9 347 10-372 224-655 (1466)
187 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-43 3E-48 376.1 26.7 205 169-384 36-253 (382)
188 PRK10771 thiQ thiamine transpo 100.0 1.8E-43 4E-48 351.9 25.9 215 149-384 1-218 (232)
189 cd03299 ABC_ModC_like Archeal 100.0 2.9E-43 6.3E-48 351.4 26.9 215 150-384 1-218 (235)
190 TIGR02142 modC_ABC molybdenum 100.0 1.6E-43 3.5E-48 373.9 26.4 209 154-385 4-221 (354)
191 TIGR02857 CydD thiol reductant 100.0 1.5E-45 3.3E-50 408.4 11.4 332 10-369 171-529 (529)
192 PRK14244 phosphate ABC transpo 100.0 2.5E-43 5.5E-48 354.9 26.6 223 149-384 5-236 (251)
193 PRK14272 phosphate ABC transpo 100.0 4E-43 8.6E-48 353.3 27.8 223 149-384 4-235 (252)
194 PRK14262 phosphate ABC transpo 100.0 3.5E-43 7.6E-48 353.5 27.4 222 149-384 3-233 (250)
195 PRK14259 phosphate ABC transpo 100.0 2.7E-43 5.8E-48 358.8 26.7 221 148-384 12-252 (269)
196 PRK15112 antimicrobial peptide 100.0 2.5E-43 5.5E-48 358.5 26.5 226 149-384 4-238 (267)
197 PLN03130 ABC transporter C fam 100.0 3.9E-45 8.5E-50 445.9 15.7 217 148-385 1236-1461(1622)
198 TIGR01277 thiQ thiamine ABC tr 100.0 2.3E-43 5E-48 346.8 25.2 209 150-379 1-212 (213)
199 COG4618 ArpD ABC-type protease 100.0 2.8E-45 6.1E-50 386.5 11.9 360 15-389 191-564 (580)
200 PRK13549 xylose transporter AT 100.0 1.4E-43 3.1E-48 390.9 26.0 220 149-383 5-230 (506)
201 COG0444 DppD ABC-type dipeptid 100.0 1.8E-43 4E-48 358.9 24.6 226 150-384 2-242 (316)
202 PRK14248 phosphate ABC transpo 100.0 7.5E-43 1.6E-47 355.0 27.9 222 149-384 21-251 (268)
203 PRK14251 phosphate ABC transpo 100.0 7E-43 1.5E-47 351.5 27.3 222 149-384 4-234 (251)
204 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-43 2.9E-48 353.6 21.9 214 150-385 1-225 (237)
205 PRK14249 phosphate ABC transpo 100.0 8.1E-43 1.8E-47 351.2 27.7 221 149-384 4-234 (251)
206 PRK14253 phosphate ABC transpo 100.0 6E-43 1.3E-47 351.6 26.7 221 149-383 3-231 (249)
207 PRK14236 phosphate transporter 100.0 9.2E-43 2E-47 355.3 28.3 222 149-384 25-255 (272)
208 cd03232 ABC_PDR_domain2 The pl 100.0 4.1E-43 8.9E-48 340.1 24.4 189 149-378 3-192 (192)
209 PRK14261 phosphate ABC transpo 100.0 9.1E-43 2E-47 351.3 27.4 222 149-384 6-236 (253)
210 PLN03232 ABC transporter C fam 100.0 9.9E-45 2.1E-49 441.5 15.7 215 148-385 1233-1458(1495)
211 PRK13547 hmuV hemin importer A 100.0 4E-43 8.7E-48 358.2 25.1 221 149-384 1-243 (272)
212 PRK11701 phnK phosphonate C-P 100.0 8.4E-43 1.8E-47 352.7 27.1 218 149-384 6-240 (258)
213 cd03233 ABC_PDR_domain1 The pl 100.0 6.3E-43 1.4E-47 341.5 24.9 195 149-378 3-202 (202)
214 PRK10762 D-ribose transporter 100.0 3.9E-43 8.5E-48 386.9 26.0 219 149-383 4-228 (501)
215 PRK14271 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 355.6 27.4 221 149-384 21-250 (276)
216 cd03297 ABC_ModC_molybdenum_tr 100.0 7.1E-43 1.5E-47 343.4 24.6 203 151-378 3-214 (214)
217 PRK14238 phosphate transporter 100.0 1.4E-42 3.1E-47 353.8 27.6 223 148-384 23-254 (271)
218 PRK14258 phosphate ABC transpo 100.0 1.6E-42 3.6E-47 351.3 27.7 222 149-384 7-244 (261)
219 PRK14255 phosphate ABC transpo 100.0 2E-42 4.4E-47 348.4 28.2 222 149-384 5-235 (252)
220 TIGR00957 MRP_assoc_pro multi 100.0 2E-44 4.3E-49 439.4 16.1 215 148-385 1283-1508(1522)
221 PRK09700 D-allose transporter 100.0 5.5E-43 1.2E-47 386.5 25.9 219 149-383 5-232 (510)
222 PRK10418 nikD nickel transport 100.0 1.3E-42 2.8E-47 350.6 26.4 219 148-384 3-229 (254)
223 PRK14260 phosphate ABC transpo 100.0 1.7E-42 3.6E-47 350.8 26.9 222 149-384 7-242 (259)
224 PRK14275 phosphate ABC transpo 100.0 1.8E-42 4E-47 355.8 27.4 223 148-384 38-269 (286)
225 cd03267 ABC_NatA_like Similar 100.0 9.8E-43 2.1E-47 347.9 24.3 199 169-378 33-236 (236)
226 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-42 2.7E-47 383.8 27.4 213 148-383 10-227 (510)
227 CHL00131 ycf16 sulfate ABC tra 100.0 3.3E-42 7.2E-47 346.6 28.2 221 149-383 7-239 (252)
228 PRK14266 phosphate ABC transpo 100.0 2.4E-42 5.2E-47 347.4 26.8 222 149-384 3-233 (250)
229 cd03251 ABCC_MsbA MsbA is an e 100.0 5.7E-43 1.2E-47 348.2 21.5 215 150-386 1-226 (234)
230 PRK14265 phosphate ABC transpo 100.0 4.1E-42 8.9E-47 351.0 28.3 222 147-384 18-257 (274)
231 TIGR03608 L_ocin_972_ABC putat 100.0 1.2E-42 2.7E-47 339.1 23.3 198 152-369 1-206 (206)
232 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-42 4.8E-47 341.4 25.1 210 150-374 2-219 (220)
233 PRK10419 nikE nickel transport 100.0 2.3E-42 5E-47 351.7 25.8 226 149-384 3-240 (268)
234 cd03213 ABCG_EPDR ABCG transpo 100.0 2.6E-42 5.7E-47 335.1 24.8 191 149-378 3-194 (194)
235 PRK14263 phosphate ABC transpo 100.0 4.1E-42 9E-47 348.6 27.3 221 147-384 6-244 (261)
236 COG1123 ATPase components of v 100.0 1.4E-42 3E-47 375.2 25.1 228 148-384 279-518 (539)
237 PRK14254 phosphate ABC transpo 100.0 4.6E-42 9.9E-47 352.6 27.3 221 148-384 38-268 (285)
238 TIGR01184 ntrCD nitrate transp 100.0 1.3E-42 2.8E-47 345.7 22.6 201 173-383 1-202 (230)
239 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8E-43 1.7E-47 348.2 20.9 218 150-386 1-227 (238)
240 PTZ00243 ABC transporter; Prov 100.0 1.2E-44 2.6E-49 440.9 9.3 215 148-385 1307-1533(1560)
241 PRK14243 phosphate transporter 100.0 3.4E-42 7.3E-47 349.7 25.7 220 149-384 10-247 (264)
242 TIGR02323 CP_lyasePhnK phospho 100.0 4.2E-42 9E-47 346.3 26.2 218 149-384 3-237 (253)
243 COG5265 ATM1 ABC-type transpor 100.0 2.5E-44 5.5E-49 372.0 10.2 224 147-386 260-487 (497)
244 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.6E-42 3.4E-47 354.1 23.4 213 149-385 2-225 (275)
245 PRK09580 sufC cysteine desulfu 100.0 7.3E-42 1.6E-46 343.1 27.3 227 149-389 1-238 (248)
246 PRK10247 putative ABC transpor 100.0 2.4E-42 5.3E-47 342.6 23.3 210 149-381 7-223 (225)
247 COG4598 HisP ABC-type histidin 100.0 1.9E-43 4.1E-48 329.6 14.3 218 149-384 6-240 (256)
248 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-42 3.1E-47 344.2 21.4 214 149-385 2-226 (229)
249 COG1123 ATPase components of v 100.0 3.7E-42 8E-47 371.9 26.3 228 149-386 5-245 (539)
250 TIGR02633 xylG D-xylose ABC tr 100.0 4.1E-42 8.9E-47 378.7 26.7 219 150-382 2-227 (500)
251 COG4559 ABC-type hemin transpo 100.0 1.4E-42 3.1E-47 331.7 19.9 218 149-384 1-229 (259)
252 PRK11288 araG L-arabinose tran 100.0 5.6E-42 1.2E-46 377.8 27.0 216 149-380 4-224 (501)
253 PRK10261 glutathione transport 100.0 6.5E-42 1.4E-46 386.2 28.0 227 148-384 312-552 (623)
254 PRK14264 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 352.7 27.6 225 148-384 44-288 (305)
255 cd03245 ABCC_bacteriocin_expor 100.0 2.7E-42 5.9E-47 340.2 21.6 209 149-378 2-220 (220)
256 COG4525 TauB ABC-type taurine 100.0 2.8E-42 6E-47 325.7 20.6 215 149-381 3-220 (259)
257 PRK15056 manganese/iron transp 100.0 7.2E-42 1.6E-46 348.8 25.3 219 149-383 6-228 (272)
258 TIGR02770 nickel_nikD nickel i 100.0 6.3E-42 1.4E-46 340.6 24.1 206 172-384 1-214 (230)
259 PRK10982 galactose/methyl gala 100.0 4.2E-42 9.1E-47 377.8 25.1 216 152-383 1-221 (491)
260 TIGR03269 met_CoM_red_A2 methy 100.0 8.4E-42 1.8E-46 378.0 27.3 221 150-387 1-260 (520)
261 PRK14252 phosphate ABC transpo 100.0 2.3E-41 5.1E-46 343.5 28.4 222 148-384 15-248 (265)
262 PRK14246 phosphate ABC transpo 100.0 1.9E-41 4.1E-46 343.1 26.7 221 149-384 10-240 (257)
263 cd03253 ABCC_ATM1_transporter 100.0 6.4E-42 1.4E-46 341.1 22.0 214 150-384 1-223 (236)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.2E-41 2.5E-46 331.9 23.3 190 150-388 1-196 (200)
265 PRK03695 vitamin B12-transport 100.0 1E-41 2.2E-46 343.2 23.3 200 172-384 11-221 (248)
266 PRK10261 glutathione transport 100.0 1.2E-41 2.6E-46 384.0 26.3 225 149-384 12-257 (623)
267 COG4181 Predicted ABC-type tra 100.0 2.8E-42 6E-47 319.7 17.2 212 149-376 6-226 (228)
268 PRK13538 cytochrome c biogenes 100.0 2.2E-41 4.8E-46 330.7 24.3 199 149-369 1-202 (204)
269 PRK15134 microcin C ABC transp 100.0 1.2E-41 2.6E-46 377.5 25.2 226 149-384 275-514 (529)
270 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-41 2.8E-46 324.2 21.8 170 150-374 1-173 (173)
271 PRK13549 xylose transporter AT 100.0 1.1E-41 2.5E-46 375.8 23.7 223 149-383 259-492 (506)
272 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-41 3.1E-46 335.3 21.9 208 149-379 2-220 (221)
273 PRK13543 cytochrome c biogenes 100.0 3.3E-41 7.2E-46 332.0 24.4 202 148-371 10-212 (214)
274 cd03231 ABC_CcmA_heme_exporter 100.0 2.7E-41 5.8E-46 329.6 23.3 195 150-369 1-198 (201)
275 PRK15134 microcin C ABC transp 100.0 4E-41 8.7E-46 373.3 27.5 224 149-384 5-245 (529)
276 TIGR03269 met_CoM_red_A2 methy 100.0 3.8E-41 8.2E-46 372.8 26.8 223 148-385 278-517 (520)
277 TIGR01257 rim_protein retinal- 100.0 3.7E-41 8.1E-46 409.6 28.6 224 148-388 1936-2162(2272)
278 TIGR01271 CFTR_protein cystic 100.0 2.3E-42 5E-47 420.3 18.0 214 148-385 1216-1440(1490)
279 PRK09544 znuC high-affinity zi 100.0 4.3E-41 9.3E-46 339.4 24.0 202 149-384 4-208 (251)
280 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.4E-41 1.4E-45 332.4 24.1 202 150-378 23-224 (224)
281 COG4161 ArtP ABC-type arginine 100.0 1.4E-41 3E-46 312.3 17.7 216 149-382 2-227 (242)
282 COG1129 MglA ABC-type sugar tr 100.0 5.7E-41 1.2E-45 360.5 25.0 216 148-379 7-228 (500)
283 cd03248 ABCC_TAP TAP, the Tran 100.0 1.4E-41 3.1E-46 336.6 18.8 211 148-374 10-226 (226)
284 cd03229 ABC_Class3 This class 100.0 3.2E-41 7E-46 322.9 20.6 171 150-373 1-178 (178)
285 PRK13546 teichoic acids export 100.0 3.1E-40 6.7E-45 335.5 28.9 219 148-386 3-233 (264)
286 TIGR01189 ccmA heme ABC export 100.0 9.2E-41 2E-45 324.7 23.3 194 150-368 1-197 (198)
287 cd03247 ABCC_cytochrome_bd The 100.0 5.4E-41 1.2E-45 321.2 20.9 175 150-378 1-178 (178)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 6.7E-41 1.5E-45 338.8 22.7 217 148-385 18-243 (257)
289 PRK13540 cytochrome c biogenes 100.0 9.7E-41 2.1E-45 325.2 22.6 194 149-367 1-197 (200)
290 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-40 3E-45 329.2 23.9 209 150-370 2-223 (224)
291 cd03246 ABCC_Protease_Secretio 100.0 6.5E-41 1.4E-45 319.3 20.5 169 150-374 1-173 (173)
292 PRK09700 D-allose transporter 100.0 6E-41 1.3E-45 370.3 23.4 215 148-380 264-493 (510)
293 TIGR01257 rim_protein retinal- 100.0 1.7E-40 3.7E-45 403.8 29.5 223 148-388 927-1152(2272)
294 cd03215 ABC_Carb_Monos_II This 100.0 9.6E-41 2.1E-45 320.7 21.3 171 149-374 4-182 (182)
295 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.5E-40 3.3E-45 325.2 23.1 198 149-380 6-207 (207)
296 TIGR02633 xylG D-xylose ABC tr 100.0 7.7E-41 1.7E-45 368.6 23.3 221 149-381 257-488 (500)
297 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.2E-42 6.9E-47 384.1 12.2 210 148-377 336-551 (555)
298 PRK10938 putative molybdenum t 100.0 8.4E-41 1.8E-45 367.4 23.1 209 149-384 3-223 (490)
299 PRK13539 cytochrome c biogenes 100.0 2.6E-40 5.7E-45 324.0 23.4 198 149-371 2-200 (207)
300 COG4172 ABC-type uncharacteriz 100.0 3E-40 6.4E-45 339.9 24.7 230 146-384 273-515 (534)
301 TIGR01166 cbiO cobalt transpor 100.0 4.6E-40 1E-44 317.6 21.7 177 169-356 4-188 (190)
302 PRK13545 tagH teichoic acids e 100.0 1.9E-39 4.1E-44 352.1 27.9 214 149-387 21-234 (549)
303 PRK10762 D-ribose transporter 100.0 4.6E-40 1E-44 362.6 23.4 214 149-383 257-482 (501)
304 COG4604 CeuD ABC-type enteroch 100.0 3.3E-41 7.1E-46 319.0 11.9 220 149-385 1-225 (252)
305 TIGR03771 anch_rpt_ABC anchore 100.0 7.3E-40 1.6E-44 324.5 21.6 197 178-384 1-200 (223)
306 PRK11288 araG L-arabinose tran 100.0 4.4E-40 9.6E-45 362.7 22.0 215 149-383 257-483 (501)
307 cd03214 ABC_Iron-Siderophores_ 100.0 4.1E-40 8.9E-45 315.8 18.7 175 151-378 1-180 (180)
308 cd03250 ABCC_MRP_domain1 Domai 100.0 8.4E-40 1.8E-44 319.3 20.6 194 150-373 1-204 (204)
309 PRK10522 multidrug transporter 100.0 1.2E-39 2.5E-44 363.0 23.4 203 149-378 322-531 (547)
310 PLN03232 ABC transporter C fam 100.0 4.3E-41 9.4E-46 409.7 12.9 340 13-385 470-828 (1495)
311 TIGR01187 potA spermidine/putr 100.0 2.1E-39 4.5E-44 338.8 22.7 187 188-385 1-190 (325)
312 cd03290 ABCC_SUR1_N The SUR do 100.0 2.8E-39 6.1E-44 318.7 22.2 200 151-373 2-218 (218)
313 PRK15439 autoinducer 2 ABC tra 100.0 1.6E-39 3.5E-44 358.9 22.7 214 149-383 268-490 (510)
314 COG4148 ModC ABC-type molybdat 100.0 2.3E-40 5E-45 327.5 14.2 195 174-385 15-218 (352)
315 cd03228 ABCC_MRP_Like The MRP 100.0 2.1E-39 4.6E-44 308.4 20.1 167 150-373 1-171 (171)
316 COG3845 ABC-type uncharacteriz 100.0 3.1E-39 6.8E-44 341.2 22.9 215 149-379 4-223 (501)
317 PRK13541 cytochrome c biogenes 100.0 5.4E-39 1.2E-43 311.7 22.7 192 150-367 2-193 (195)
318 cd03216 ABC_Carb_Monos_I This 100.0 5.2E-39 1.1E-43 303.7 21.6 157 150-376 1-162 (163)
319 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.1E-38 2.5E-43 326.8 25.5 204 146-385 36-247 (282)
320 PRK10535 macrolide transporter 100.0 1.3E-38 2.8E-43 360.7 27.8 220 149-384 4-231 (648)
321 PRK15064 ABC transporter ATP-b 100.0 8E-39 1.7E-43 355.0 25.2 211 149-384 1-241 (530)
322 PLN03130 ABC transporter C fam 100.0 2E-40 4.3E-45 404.7 12.5 206 149-385 614-828 (1622)
323 cd03223 ABCD_peroxisomal_ALDP 100.0 1.1E-38 2.3E-43 302.5 21.1 164 150-373 1-164 (166)
324 COG4619 ABC-type uncharacteriz 100.0 2.6E-40 5.6E-45 305.7 9.2 194 168-374 14-212 (223)
325 PRK11819 putative ABC transpor 100.0 1.6E-38 3.4E-43 354.5 25.3 210 148-383 5-248 (556)
326 COG0396 sufC Cysteine desulfur 100.0 7.5E-38 1.6E-42 303.2 25.1 231 149-394 3-242 (251)
327 PRK10982 galactose/methyl gala 100.0 2.1E-38 4.6E-43 348.5 22.6 216 148-381 249-476 (491)
328 PRK10938 putative molybdenum t 100.0 2.6E-38 5.6E-43 347.7 22.2 215 148-378 259-485 (490)
329 TIGR00954 3a01203 Peroxysomal 100.0 9.8E-40 2.1E-44 370.3 11.3 340 8-371 264-653 (659)
330 PRK15177 Vi polysaccharide exp 100.0 3.6E-38 7.7E-43 310.6 20.6 195 171-389 1-196 (213)
331 PRK15064 ABC transporter ATP-b 100.0 3.8E-38 8.2E-43 349.6 23.3 204 148-385 318-525 (530)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.6E-38 1E-42 350.5 24.0 210 149-384 4-247 (552)
333 COG1119 ModF ABC-type molybden 100.0 1.5E-38 3.4E-43 311.2 17.6 216 148-379 30-256 (257)
334 COG4172 ABC-type uncharacteriz 100.0 1E-37 2.2E-42 321.2 21.8 227 149-384 6-246 (534)
335 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.4E-37 3E-42 313.0 22.3 190 171-383 8-205 (246)
336 COG4608 AppF ABC-type oligopep 100.0 1.3E-37 2.9E-42 310.1 20.7 193 149-384 4-198 (268)
337 PRK11819 putative ABC transpor 100.0 4.1E-37 9E-42 343.1 24.6 205 148-383 323-531 (556)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.9E-37 1.7E-41 340.6 24.8 205 148-383 321-529 (552)
339 COG4674 Uncharacterized ABC-ty 100.0 3.1E-37 6.7E-42 291.6 15.9 220 148-384 4-234 (249)
340 COG4586 ABC-type uncharacteriz 100.0 2.4E-37 5.1E-42 305.5 15.6 208 170-388 37-249 (325)
341 PRK13409 putative ATPase RIL; 100.0 1.5E-36 3.1E-41 339.7 23.9 197 148-379 339-536 (590)
342 KOG0054 Multidrug resistance-a 100.0 1.1E-37 2.4E-42 365.6 14.4 334 26-385 1001-1362(1381)
343 PRK10636 putative ABC transpor 100.0 2.1E-36 4.5E-41 342.1 23.8 203 148-385 311-517 (638)
344 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-36 2.7E-41 307.7 18.7 199 154-378 5-220 (255)
345 COG1101 PhnK ABC-type uncharac 100.0 2.5E-36 5.4E-41 289.5 16.4 204 168-379 17-232 (263)
346 PRK11147 ABC transporter ATPas 100.0 8.4E-36 1.8E-40 337.3 23.4 205 148-383 318-526 (635)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.1E-36 1.7E-40 276.5 19.1 144 150-373 1-144 (144)
348 COG1134 TagH ABC-type polysacc 100.0 4.9E-35 1.1E-39 286.8 23.9 222 149-390 3-241 (249)
349 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-35 2.9E-40 362.2 24.6 209 149-385 636-850 (1522)
350 PRK10636 putative ABC transpor 100.0 1.6E-35 3.6E-40 334.8 23.3 208 149-383 1-234 (638)
351 PLN03073 ABC transporter F fam 100.0 3.4E-35 7.3E-40 334.6 25.8 207 148-386 507-715 (718)
352 COG4136 ABC-type uncharacteriz 100.0 1E-35 2.2E-40 270.8 15.4 192 149-357 2-197 (213)
353 cd03238 ABC_UvrA The excision 100.0 3.7E-35 8.1E-40 280.9 19.7 158 168-374 6-166 (176)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 4.6E-35 1E-39 280.5 18.9 153 153-381 4-159 (177)
355 TIGR01271 CFTR_protein cystic 100.0 8.5E-35 1.8E-39 354.3 25.3 197 170-385 439-636 (1490)
356 PRK11147 ABC transporter ATPas 100.0 9.6E-35 2.1E-39 328.7 23.9 207 149-383 3-241 (635)
357 COG4167 SapF ABC-type antimicr 100.0 1E-34 2.2E-39 271.9 17.2 226 149-384 4-238 (267)
358 KOG0059 Lipid exporter ABCA1 a 100.0 7.9E-35 1.7E-39 339.2 20.0 223 148-388 563-790 (885)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.7E-34 5.8E-39 269.1 19.8 152 152-373 2-157 (157)
360 KOG0054 Multidrug resistance-a 100.0 7.7E-34 1.7E-38 333.5 22.9 208 148-385 517-731 (1381)
361 PRK13409 putative ATPase RIL; 100.0 7.6E-34 1.6E-38 317.8 18.7 188 155-372 79-287 (590)
362 PTZ00243 ABC transporter; Prov 100.0 2.6E-33 5.7E-38 341.9 22.1 199 169-385 672-870 (1560)
363 COG0488 Uup ATPase components 100.0 5.9E-33 1.3E-37 304.7 20.9 207 149-382 3-237 (530)
364 PLN03073 ABC transporter F fam 100.0 3.1E-33 6.7E-38 318.5 17.8 218 147-382 175-428 (718)
365 COG4107 PhnK ABC-type phosphon 100.0 4.5E-33 9.7E-38 259.0 14.3 214 149-384 6-240 (258)
366 COG4133 CcmA ABC-type transpor 100.0 2E-32 4.4E-37 258.0 15.4 187 150-357 3-192 (209)
367 cd03270 ABC_UvrA_I The excisio 100.0 2.5E-31 5.4E-36 264.3 20.1 190 169-378 7-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 6.7E-32 1.4E-36 250.4 14.1 213 148-371 3-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 2E-31 4.3E-36 243.0 13.0 133 173-324 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.2E-30 2.6E-35 264.1 19.4 195 170-380 8-261 (261)
371 COG0488 Uup ATPase components 100.0 1.4E-29 3E-34 278.1 20.5 205 147-385 319-525 (530)
372 COG1129 MglA ABC-type sugar tr 100.0 5.4E-29 1.2E-33 268.1 21.9 213 147-379 261-484 (500)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 2.1E-29 4.6E-34 245.5 12.6 165 174-371 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 3.4E-29 7.3E-34 233.4 6.7 207 149-384 3-220 (248)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3.1E-29 6.6E-34 247.1 2.3 188 150-371 6-204 (212)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.6E-27 3.5E-32 238.5 14.5 185 169-370 14-234 (243)
377 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.9E-27 1.1E-31 231.3 15.1 192 149-373 5-210 (213)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-27 2.2E-32 241.9 9.9 183 183-370 25-242 (251)
379 PRK00635 excinuclease ABC subu 99.9 5.2E-26 1.1E-30 273.9 23.2 138 240-385 759-906 (1809)
380 cd03240 ABC_Rad50 The catalyti 99.9 1.1E-26 2.3E-31 227.7 12.4 165 175-371 15-197 (204)
381 COG4615 PvdE ABC-type sideroph 99.9 4.1E-27 8.8E-32 242.3 9.4 204 149-378 322-530 (546)
382 COG3845 ABC-type uncharacteriz 99.9 2.4E-25 5.2E-30 236.0 22.0 222 147-382 255-489 (501)
383 COG4178 ABC-type uncharacteriz 99.9 5.7E-26 1.2E-30 249.1 17.0 196 148-370 391-587 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 5.4E-25 1.2E-29 255.4 23.8 126 244-385 792-927 (943)
385 KOG0927 Predicted transporter 99.9 4E-25 8.7E-30 235.4 14.1 215 148-383 74-307 (614)
386 COG4170 SapD ABC-type antimicr 99.9 2.3E-25 5.1E-30 213.0 10.8 229 150-385 4-248 (330)
387 TIGR00630 uvra excinuclease AB 99.9 2.9E-24 6.4E-29 248.8 21.8 124 244-383 790-923 (924)
388 KOG0927 Predicted transporter 99.9 4.2E-25 9E-30 235.3 9.2 202 147-380 387-591 (614)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.1E-23 4.7E-28 203.4 14.7 168 172-373 11-192 (198)
390 KOG0060 Long-chain acyl-CoA tr 99.9 1.6E-22 3.4E-27 217.1 17.8 204 148-371 432-641 (659)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.6E-23 3.5E-28 210.9 9.5 179 181-371 21-233 (247)
392 COG1245 Predicted ATPase, RNas 99.9 1.1E-22 2.5E-27 212.9 16.0 174 172-370 356-530 (591)
393 KOG0062 ATPase component of AB 99.9 5.3E-23 1.1E-27 218.3 10.2 203 148-384 79-284 (582)
394 KOG2355 Predicted ABC-type tra 99.9 1.1E-21 2.5E-26 187.3 15.9 210 148-385 12-237 (291)
395 KOG0066 eIF2-interacting prote 99.9 1.7E-21 3.8E-26 202.4 13.9 192 147-372 584-777 (807)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.9 4.2E-21 9.2E-26 189.4 15.5 81 292-373 123-211 (213)
397 KOG0062 ATPase component of AB 99.8 6.8E-21 1.5E-25 202.4 14.5 201 146-376 359-559 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 8E-21 1.7E-25 185.3 12.2 154 172-378 16-172 (200)
399 cd03239 ABC_SMC_head The struc 99.8 7.9E-20 1.7E-24 175.5 14.5 74 296-371 95-172 (178)
400 COG1245 Predicted ATPase, RNas 99.8 4.2E-20 9.1E-25 193.8 10.9 170 179-371 96-288 (591)
401 cd03283 ABC_MutS-like MutS-lik 99.8 3.9E-20 8.5E-25 180.6 9.8 148 169-369 13-163 (199)
402 PRK00635 excinuclease ABC subu 99.8 5.7E-19 1.2E-23 213.6 20.2 199 172-385 1505-1796(1809)
403 KOG0064 Peroxisomal long-chain 99.8 1.3E-19 2.8E-24 192.6 11.4 184 149-356 481-670 (728)
404 COG0178 UvrA Excinuclease ATPa 99.8 2E-18 4.3E-23 191.7 20.9 110 270-385 801-919 (935)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.1E-19 2.3E-24 180.5 9.0 153 169-379 16-175 (222)
406 cd03241 ABC_RecN RecN ATPase i 99.8 1.1E-18 2.5E-23 178.5 16.7 76 295-373 170-249 (276)
407 COG2401 ABC-type ATPase fused 99.8 6.6E-19 1.4E-23 182.9 12.8 185 169-375 395-588 (593)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 1.2E-18 2.6E-23 164.5 12.0 75 295-371 77-155 (162)
409 PRK00349 uvrA excinuclease ABC 99.8 6.2E-18 1.3E-22 196.8 15.0 136 242-385 435-585 (943)
410 KOG0066 eIF2-interacting prote 99.8 3.1E-19 6.6E-24 185.9 3.5 214 148-380 263-494 (807)
411 TIGR00630 uvra excinuclease AB 99.7 1.6E-17 3.4E-22 193.1 15.8 134 243-384 434-582 (924)
412 cd03242 ABC_RecF RecF is a rec 99.7 4.5E-17 9.8E-22 166.3 17.3 77 293-374 181-269 (270)
413 cd03243 ABC_MutS_homologs The 99.7 2.2E-18 4.7E-23 168.4 5.1 157 175-384 21-178 (202)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 9.8E-17 2.1E-21 157.3 8.7 136 169-356 15-152 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.3E-16 7.2E-21 154.9 10.7 160 169-384 17-180 (216)
416 TIGR02858 spore_III_AA stage I 99.6 2.4E-15 5.3E-20 153.3 11.0 139 184-383 112-267 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.6 4.6E-15 9.9E-20 155.0 12.1 178 169-370 348-531 (592)
418 PRK00064 recF recombination pr 99.5 6.5E-13 1.4E-17 141.2 20.7 77 294-374 272-359 (361)
419 smart00534 MUTSac ATPase domai 99.5 1.1E-14 2.4E-19 140.5 4.3 78 294-376 60-141 (185)
420 cd00820 PEPCK_HprK Phosphoenol 99.5 6.1E-14 1.3E-18 123.3 6.6 73 170-253 2-78 (107)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 9.6E-13 2.1E-17 129.8 13.6 88 269-370 121-212 (220)
422 TIGR01069 mutS2 MutS2 family p 99.4 1.5E-13 3.2E-18 158.4 8.7 131 175-356 313-446 (771)
423 cd03281 ABC_MSH5_euk MutS5 hom 99.4 9.7E-13 2.1E-17 130.0 12.3 132 171-356 17-155 (213)
424 cd01128 rho_factor Transcripti 99.4 5.9E-13 1.3E-17 134.4 10.4 174 178-374 11-211 (249)
425 PTZ00132 GTP-binding nuclear p 99.4 8E-13 1.7E-17 129.9 7.5 48 296-343 151-205 (215)
426 PRK07721 fliI flagellum-specif 99.3 1.5E-11 3.3E-16 133.2 16.1 174 169-382 145-340 (438)
427 TIGR00634 recN DNA repair prot 99.3 2.2E-12 4.8E-17 144.7 9.1 77 294-373 439-519 (563)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.2E-11 2.5E-16 123.0 12.2 135 169-356 17-155 (222)
429 TIGR00618 sbcc exonuclease Sbc 99.3 6E-12 1.3E-16 150.6 10.8 81 291-372 946-1036(1042)
430 PRK10869 recombination and rep 99.3 7.5E-12 1.6E-16 139.8 9.9 77 294-373 429-509 (553)
431 PHA02562 46 endonuclease subun 99.3 4.3E-12 9.3E-17 142.1 7.9 78 293-374 466-555 (562)
432 KOG0063 RNAse L inhibitor, ABC 99.3 8.1E-12 1.8E-16 131.0 9.2 169 181-371 98-288 (592)
433 PRK00409 recombination and DNA 99.3 3.6E-12 7.7E-17 147.4 6.9 81 294-377 389-470 (782)
434 COG0178 UvrA Excinuclease ATPa 99.2 5.6E-11 1.2E-15 133.1 13.9 138 241-385 426-577 (935)
435 PF13304 AAA_21: AAA domain; P 99.2 3.2E-11 7E-16 117.3 7.3 64 293-356 234-300 (303)
436 cd01124 KaiC KaiC is a circadi 99.2 2.6E-10 5.7E-15 109.0 12.9 79 292-370 68-163 (187)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.2 5.3E-11 1.2E-15 118.0 7.9 137 169-356 16-154 (218)
438 PRK08533 flagellar accessory p 99.2 3.8E-10 8.3E-15 112.8 14.1 150 179-370 20-184 (230)
439 PRK03918 chromosome segregatio 99.2 6.2E-11 1.3E-15 139.6 9.4 78 292-371 785-868 (880)
440 PRK13695 putative NTPase; Prov 99.1 2.2E-11 4.8E-16 116.1 3.9 79 294-378 77-157 (174)
441 TIGR00606 rad50 rad50. This fa 99.1 1.1E-10 2.4E-15 142.6 9.7 110 241-363 1154-1277(1311)
442 PRK10246 exonuclease subunit S 99.1 1.9E-10 4.1E-15 137.5 10.8 80 291-371 945-1032(1047)
443 PRK13830 conjugal transfer pro 99.1 1.8E-09 3.9E-14 126.1 17.5 78 311-392 650-736 (818)
444 TIGR02788 VirB11 P-type DNA tr 99.1 4.3E-10 9.4E-15 117.2 9.7 143 176-384 137-280 (308)
445 PRK01156 chromosome segregatio 99.0 5.2E-10 1.1E-14 132.2 10.3 77 292-370 798-883 (895)
446 cd01120 RecA-like_NTPases RecA 99.0 1E-09 2.2E-14 101.2 9.6 62 296-357 68-139 (165)
447 COG3910 Predicted ATPase [Gene 99.0 4.8E-09 1E-13 100.1 14.1 83 289-374 123-206 (233)
448 TIGR02168 SMC_prok_B chromosom 99.0 5.3E-10 1.2E-14 134.7 7.3 76 292-370 1086-1165(1179)
449 PRK06793 fliI flagellum-specif 99.0 1.8E-09 3.9E-14 116.5 10.6 170 149-380 130-306 (432)
450 cd01131 PilT Pilus retraction 98.9 3.9E-09 8.5E-14 103.1 10.5 57 305-370 66-122 (198)
451 PRK06067 flagellar accessory p 98.9 1.4E-08 3.1E-13 101.3 12.4 163 171-370 12-186 (234)
452 PRK02224 chromosome segregatio 98.9 4.2E-09 9.1E-14 124.3 9.2 78 293-372 779-869 (880)
453 TIGR02169 SMC_prok_A chromosom 98.9 3.3E-09 7.2E-14 128.1 8.2 77 292-371 1071-1151(1164)
454 PRK06995 flhF flagellar biosyn 98.8 1E-08 2.2E-13 112.2 9.9 151 171-354 244-401 (484)
455 cd01125 repA Hexameric Replica 98.8 3E-08 6.4E-13 99.5 11.6 136 183-356 1-160 (239)
456 TIGR03238 dnd_assoc_3 dnd syst 98.8 4.3E-09 9.3E-14 113.8 5.2 52 170-224 19-70 (504)
457 smart00382 AAA ATPases associa 98.8 2.3E-07 5E-12 82.0 15.0 59 295-353 60-124 (148)
458 TIGR01420 pilT_fam pilus retra 98.6 1E-07 2.3E-12 100.8 10.2 56 305-369 187-242 (343)
459 PRK13891 conjugal transfer pro 98.6 3.4E-07 7.4E-12 107.6 14.3 69 306-375 680-751 (852)
460 TIGR00611 recf recF protein. A 98.6 7.8E-08 1.7E-12 102.6 7.2 59 295-356 275-342 (365)
461 TIGR01026 fliI_yscN ATPase Fli 98.6 2.3E-07 4.9E-12 101.0 10.6 176 169-383 150-346 (440)
462 TIGR03881 KaiC_arch_4 KaiC dom 98.6 2.1E-08 4.6E-13 99.5 2.0 50 171-221 7-57 (229)
463 PRK07196 fliI flagellum-specif 98.6 6.9E-08 1.5E-12 104.4 6.0 86 169-256 142-239 (434)
464 cd01130 VirB11-like_ATPase Typ 98.6 1.9E-07 4E-12 90.2 8.2 84 172-257 14-100 (186)
465 TIGR02655 circ_KaiC circadian 98.6 5.4E-09 1.2E-13 115.4 -2.9 167 171-370 8-190 (484)
466 COG0419 SbcC ATPase involved i 98.5 2.5E-07 5.4E-12 109.8 10.4 79 292-372 812-898 (908)
467 PRK14079 recF recombination pr 98.5 1.7E-07 3.6E-12 99.5 8.0 75 295-377 263-346 (349)
468 cd02023 UMPK Uridine monophosp 98.5 1.9E-07 4.1E-12 90.8 5.5 112 185-328 1-113 (198)
469 PRK06002 fliI flagellum-specif 98.4 6.8E-07 1.5E-11 97.0 8.9 83 147-239 137-230 (450)
470 PRK05399 DNA mismatch repair p 98.4 6.5E-07 1.4E-11 105.2 8.7 139 169-365 594-738 (854)
471 TIGR02680 conserved hypothetic 98.4 5.1E-07 1.1E-11 110.7 7.4 60 293-355 1245-1316(1353)
472 PLN03210 Resistant to P. syrin 98.3 1.6E-06 3.4E-11 105.5 10.2 164 174-392 198-365 (1153)
473 PRK09825 idnK D-gluconate kina 98.3 4.1E-07 8.9E-12 87.3 3.7 66 182-253 2-70 (176)
474 PRK13873 conjugal transfer ATP 98.2 3.2E-05 6.8E-10 90.9 18.4 46 311-356 633-679 (811)
475 PRK13898 type IV secretion sys 98.2 6.4E-05 1.4E-09 88.2 20.1 48 310-357 639-687 (800)
476 cd01122 GP4d_helicase GP4d_hel 98.2 5.3E-05 1.2E-09 77.0 15.9 37 169-205 16-52 (271)
477 PRK06315 type III secretion sy 98.1 5.9E-06 1.3E-10 89.8 8.4 110 169-281 151-277 (442)
478 TIGR00767 rho transcription te 98.1 5.1E-06 1.1E-10 88.8 7.4 53 148-207 129-192 (415)
479 cd00009 AAA The AAA+ (ATPases 98.1 2.6E-05 5.7E-10 69.5 10.8 54 301-355 72-130 (151)
480 PF09818 ABC_ATPase: Predicted 98.1 9.2E-05 2E-09 79.6 16.1 159 179-374 241-416 (448)
481 PF13555 AAA_29: P-loop contai 98.1 4.6E-06 1E-10 66.2 4.4 36 173-208 12-48 (62)
482 PRK09270 nucleoside triphospha 98.1 4.5E-06 9.7E-11 83.3 5.5 71 181-254 31-105 (229)
483 TIGR00416 sms DNA repair prote 98.1 1.4E-05 3.1E-10 87.6 9.7 62 312-373 169-247 (454)
484 PRK01889 GTPase RsgA; Reviewed 98.1 9.1E-06 2E-10 86.6 7.8 78 172-252 184-262 (356)
485 PRK03846 adenylylsulfate kinas 98.1 2.7E-06 5.9E-11 82.9 3.5 56 181-237 22-77 (198)
486 PF13558 SbcCD_C: Putative exo 98.0 1.1E-05 2.4E-10 68.9 6.2 48 293-340 30-90 (90)
487 TIGR00235 udk uridine kinase. 98.0 2.3E-06 5.1E-11 83.9 2.2 27 181-207 4-30 (207)
488 cd01876 YihA_EngB The YihA (En 98.0 7.2E-06 1.6E-10 75.3 5.3 64 270-341 101-169 (170)
489 PRK10078 ribose 1,5-bisphospho 98.0 6.9E-06 1.5E-10 79.2 5.2 37 183-224 2-38 (186)
490 TIGR00554 panK_bact pantothena 98.0 6.1E-06 1.3E-10 85.3 4.6 73 183-256 62-137 (290)
491 PRK00454 engB GTP-binding prot 98.0 7.9E-05 1.7E-09 71.4 12.1 67 270-344 126-195 (196)
492 PRK10416 signal recognition pa 98.0 5.9E-06 1.3E-10 86.6 4.4 71 181-253 112-192 (318)
493 TIGR00152 dephospho-CoA kinase 98.0 9.5E-06 2.1E-10 78.3 5.3 73 298-372 60-133 (188)
494 TIGR02903 spore_lon_C ATP-depe 97.9 2.9E-05 6.3E-10 88.4 9.4 111 183-340 175-291 (615)
495 PRK08149 ATP synthase SpaL; Va 97.9 1.6E-05 3.4E-10 86.2 6.8 68 169-238 138-215 (428)
496 cd01121 Sms Sms (bacterial rad 97.9 5.7E-05 1.2E-09 80.9 10.2 36 172-207 70-106 (372)
497 TIGR02524 dot_icm_DotB Dot/Icm 97.9 7.9E-05 1.7E-09 79.4 10.9 43 181-223 132-175 (358)
498 PRK13764 ATPase; Provisional 97.9 0.00011 2.3E-09 82.9 12.3 64 310-381 321-401 (602)
499 TIGR02322 phosphon_PhnN phosph 97.9 4E-05 8.8E-10 73.0 7.6 25 183-207 1-25 (179)
500 PLN02318 phosphoribulokinase/u 97.8 1.5E-05 3.3E-10 88.7 4.8 63 184-252 66-128 (656)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-67 Score=590.59 Aligned_cols=381 Identities=44% Similarity=0.726 Sum_probs=313.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCC-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~- 224 (562)
+..+.|+|+++..+.+. ...+.+|+|||++++|||++||||||||||||||++|+|+.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999864221 13578999999999999999999999999999999999988653 57899999997654
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|...++++++++++++++++||.+++||++|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999888999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||.+|+.||+||||||||||||+.++.++++.|++++++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHHhhhh
Q 008534 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (562)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (562)
+||+++|++||.+.||+||++++++.+ .. ........+..... ..... +. ...+... ++ ....
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~-~~--------~~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLI-NKFSQ-TD--NLKKTLE-AL--------EKSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHh-hhccc-cc--hhhhhHH-HH--------hhhc
Confidence 999999999999999999999998754 00 00000000000000 00000 00 0000000 00 0000
Q ss_pred cCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHH
Q 008534 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQV 543 (562)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~ 543 (562)
.... .......++||.|+++|++|.+++ +|++.+.+.|+++++++|+++|++||+++. +.+++++|.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000111689999999999999998 677888899999999999999999999964 678888999
Q ss_pred HHHHHHHHHhhhhhhh
Q 008534 544 HNLFCWSIQLPSPIVF 559 (562)
Q Consensus 544 g~lFf~~~~~~~~~~~ 559 (562)
|++||++.++.+..++
T Consensus 391 g~~~~~~~~~~f~~~~ 406 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMF 406 (613)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887665554
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.2e-66 Score=581.81 Aligned_cols=387 Identities=50% Similarity=0.841 Sum_probs=304.2
Q ss_pred ceeEEEEeEEEEEeeccc-C--------------------CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 147 PIYLKFTDVTYKVILKGM-T--------------------SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~-~--------------------~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+..++|.|++|+....+. . ..+++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 568999999998743220 0 1124679999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccc
Q 008534 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285 (562)
Q Consensus 206 ~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 285 (562)
+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++.|
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 76421248999999999866666789999999999999999999999887765544556666778999999999999999
Q ss_pred ccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 286 t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
|.+|+..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++++.||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999889999999999999999999999999999999999999999999999999888999999999998778899999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHH
Q 008534 366 LILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445 (562)
Q Consensus 366 i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (562)
|++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+...-.... . . .+ ...
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~---------~-~------~~---~~~ 337 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE---------R-E------KP---NVK 337 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc---------c-c------cc---hHH
Confidence 999999999999999999999999999999999999999999865421100000 0 0 00 011
Q ss_pred HHHHHHHHHHHhHHHhhhh--c-CCCCCcHHh---hhh-cCCCCCCccCcHHHHHHHHHHHhHHHhhcchhHHHHHHHHH
Q 008534 446 EYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAK-VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 518 (562)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~-~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 518 (562)
+.+.+.|.+.......... . ......... ... ....+..+..+||+|+++|++|+++++|++.+.+.|+++.+
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 338 QSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1122222211100000000 0 000000000 000 00112235679999999999999999999988889999999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHhhh
Q 008534 519 ATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQLPS 555 (562)
Q Consensus 519 ~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~~~ 555 (562)
++|+++|++||+++ ..++++|.|++||++++++.
T Consensus 418 ~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 418 AAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999984 47899999999999776543
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-62 Score=552.55 Aligned_cols=365 Identities=35% Similarity=0.581 Sum_probs=294.1
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCC-hhccCcEEEEccCCCCCCCCC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lT 245 (562)
.++++|+|||+++++||+++|+|||||||||||++|+|+.... ..+|+|.+||.++. ..+++.+|||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3678999999999999999999999999999999999976421 14799999999986 356778999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc-cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
|+|||.|++.++.+...++++++++++++++.+||.++.||.+|+.. .++|||||||||+|||||+.+|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666777788889999999999999999999753 67899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~npad~~ 404 (562)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|++++.|+++++.+||+++|+.||.+.||+||+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999888999999999998788999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHH-hhhhcCCCCCcHHh-hhhcCCCC
Q 008534 405 LDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE-KKKLMAPIPLDEEI-KAKVSSPK 482 (562)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 482 (562)
+++++.+..... . .....+.+.+.|.......+ .............. +.......
T Consensus 276 ~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (617)
T TIGR00955 276 VQVLAVIPGSEN---E--------------------SRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332 (617)
T ss_pred HHHhhcCccccc---c--------------------hHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccc
Confidence 998764321100 0 00011111222211100000 00000000000000 00001122
Q ss_pred CCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHhhhh
Q 008534 483 RNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQLPSP 556 (562)
Q Consensus 483 ~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~~~~ 556 (562)
..+..+|+.|+++|++|.+++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|++||+++++.+.
T Consensus 333 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~~~g~lf~~~~~~~f~ 406 (617)
T TIGR00955 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQ 406 (617)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999987 688888889999999999999999999975 6789999999999998765443
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.4e-61 Score=578.75 Aligned_cols=382 Identities=29% Similarity=0.508 Sum_probs=303.0
Q ss_pred CCceeEEEEeEEEEEeecccC-----CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC
Q 008534 145 TLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (562)
Q Consensus 145 ~~~~~l~~~nvs~~y~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~ 219 (562)
..+..+.|+||+|.++.+.-. ..+.+.+|+|||++++||+++||+|||||||||||++|+|+....+.+|+|.+|
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred CCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 345579999999998532100 012457999999999999999999999999999999999976433468999999
Q ss_pred CEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 220 DHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 220 G~~~~~-~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
|.+... ..++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+|+..+++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 998753 4567799999999999999999999999877766555666667789999999999999999999877789999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~ 377 (562)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778899999999996 899999
Q ss_pred cCh----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHH
Q 008534 378 GKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEA 451 (562)
Q Consensus 378 G~~----~el~~~f~~~-g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 451 (562)
|++ +++++||+++ |+ .||.+.|||||++++++..... . ...+..+.+..+ +.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~--~~~d~~~~~~~s-----------~~ 1160 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------K--LGIDFAEHYKSS-----------SL 1160 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------c--ccchHHHHHhcc-----------HH
Confidence 996 6899999998 56 4999999999999987532110 0 000000001111 01
Q ss_pred HHHHHhHHHhhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhC
Q 008534 452 YETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQ 530 (562)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~ 530 (562)
|++..... ..+..+.+.. .......+|..+||.|+++|++|++++ ||++.+.+.|+++.+++|+++|++||+
T Consensus 1161 ~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1161 YQRNKALV--KELSTPPPGA-----SDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHH--HHhccCCCCc-----cccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 11110000 0111111100 011123467899999999999999986 899999999999999999999999999
Q ss_pred CCCCC--hhhHHhHHHHHHHHHHHhhh
Q 008534 531 SDSKS--PKGLEDQVHNLFCWSIQLPS 555 (562)
Q Consensus 531 ~~~~~--~~~~~~r~g~lFf~~~~~~~ 555 (562)
++++. ..+++++.|++|++++|.+.
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~ 1260 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGI 1260 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 97542 36788999999999888665
No 5
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-62 Score=563.39 Aligned_cols=373 Identities=31% Similarity=0.543 Sum_probs=311.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhcc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~ 228 (562)
..|+|+.|..+.+ ++.+.+|+||++.++||.++||||+|||||||||++|+||...+..+|+|++||.|.. +.++
T Consensus 788 ~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCcccccc----ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 3444444444322 2567899999999999999999999999999999999999766667899999999998 6788
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|.+|||.|+|.|.+.+||+|.|.|++.+|+|..++.+++.+.++++++.++|+++.|.+||..+ .+||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEecCh----HH
Q 008534 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SE 382 (562)
Q Consensus 309 aLl~~P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~G~~----~e 382 (562)
+|+.+| .||||||||||||+.++..|++.++++++.|+||||++|||+.++++.||++++|++ |+.||.|+. +.
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 999999999999999999999999999999999999999999999999999999986 699999986 45
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHHh
Q 008534 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (562)
Q Consensus 383 l~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 461 (562)
+++||+++| .+||...|||||++|++...... . ...++++.|..++..+...+. -
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------~--~~~D~a~~w~~S~e~k~~~e~-------------v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------S--LSVDFAEIWKNSEEYKRNKEL-------------V 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc---------c--cCccHHHHHhccHHHHHHHHH-------------H
Confidence 778999997 78998889999999998643211 0 011122222222111111110 1
Q ss_pred hhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHH
Q 008534 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (562)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~ 540 (562)
.++.++.+. +......+.+|..|+|.|++.+++|++.. ||+|.+.+.|++..++.||++|+.||+.+ .+..++|
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 112222222 11222345678999999999999999985 89999999999999999999999999998 4789999
Q ss_pred hHHHHHHHHHHHhhhh
Q 008534 541 DQVHNLFCWSIQLPSP 556 (562)
Q Consensus 541 ~r~g~lFf~~~~~~~~ 556 (562)
|.+|++|+.+++.+..
T Consensus 1154 n~m~a~yma~v~~~~~ 1169 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPN 1169 (1391)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999887654
No 6
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-64 Score=552.43 Aligned_cols=363 Identities=24% Similarity=0.373 Sum_probs=299.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccc-cccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKL-ELDEVS 86 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (562)
.++.++.||+.|.++.+|+|.+++++|||+|+++..|.++|.++++..+.++.+++.+++.+ +.++..-.++ .+.-++
T Consensus 313 rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~ 391 (716)
T KOG0058|consen 313 RKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILF 391 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999 5555555554 455688
Q ss_pred chhhhhhhhhhhhhhhcccccCCCCccccccCCCCCCCCCccccccccCC----------CCCCCCCC-CCceeEEEEeE
Q 008534 87 SGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRE----------RPKFQTEP-TLPIYLKFTDV 155 (562)
Q Consensus 87 ~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~l~~~nv 155 (562)
+|+.++..|.++.|.+.+|..|.+...........-+.++...+.+..+. .+.....| .....|+|+||
T Consensus 392 ~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~V 471 (716)
T KOG0058|consen 392 YGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDV 471 (716)
T ss_pred hccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEe
Confidence 99999999999999999999998876654333222222222223332221 01111112 23457999999
Q ss_pred EEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcE
Q 008534 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKI 231 (562)
Q Consensus 156 s~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~i 231 (562)
+|.|+ .+++.+||+|+||+|+|||++|||||||+||||+.++|. ++|+|. +|+|++||+|+++ .+|++|
T Consensus 472 sFaYP-----~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 472 SFAYP-----TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eeecC-----CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHHHHHHHe
Confidence 99984 345788999999999999999999999999999999999 688765 8999999999863 578999
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 232 gyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
|+|.|+|.||.. ||+|||.|+......+.+....+.+.+++++.. +++.+||.||.+. .+||||||||++|||||+
T Consensus 545 g~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG-~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 545 GLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG-SQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc-ccccchHHHHHHHHHHHh
Confidence 999999999975 999999998642111122233344556777764 5899999999754 469999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+||+||||||+||+||.+++..|.+.|.++.+ ++|||+|.|++++ .+.+|+|+|+++|++++.|+|+|+++
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999998875 6999999999986 58899999999999999999999985
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.6e-60 Score=574.79 Aligned_cols=375 Identities=32% Similarity=0.571 Sum_probs=299.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~ 227 (562)
.++++||+|.|.. ++..+.+|+|||+++++||++||+|||||||||||++|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKI----KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecC----CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 5899999999832 123568999999999999999999999999999999999976421 45799999999987667
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.+|||+|++.+++.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88899999999999999999999999887766555666777889999999999999999987543 37999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC-eEEEecCh----H
Q 008534 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (562)
Q Consensus 308 raLl~~P~-iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (562)
+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||+|++|++| ++++.|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999987677889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHHHHhHHH
Q 008534 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (562)
Q Consensus 382 el~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (562)
++++||+++|+ +||.+.|||||++|+++....... ..+..+.+..++..+...+ .+.
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~-----------~~~~~~~~~~s~~~~~~~~--------~~~--- 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA-----------NQDYHEVWRNSSEYQAVKN--------ELD--- 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch-----------hccHHHHHhcCHHHHHHHH--------HHH---
Confidence 78999999996 999999999999998764321100 0000011111110000000 000
Q ss_pred hhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhH
Q 008534 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (562)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~ 539 (562)
....+........ ......++..|||+|+++|++|++++ ||++.+.+.|+++.+++|+++|++||++++ +..++
T Consensus 1052 --~~~~~~~~~~~~~--~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAEDDN--DPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcccc--ccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 0000000000000 01122457899999999999999997 788888999999999999999999999975 67899
Q ss_pred HhHHHHHHHHHHHhhh
Q 008534 540 EDQVHNLFCWSIQLPS 555 (562)
Q Consensus 540 ~~r~g~lFf~~~~~~~ 555 (562)
++|.|++||++++++.
T Consensus 1127 ~~~~g~~f~~~~~~~~ 1142 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNP 1142 (1394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876544
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1e-60 Score=576.56 Aligned_cols=371 Identities=28% Similarity=0.425 Sum_probs=289.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hccCcEEEEccCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~--~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~~ 243 (562)
.+.+|+|||+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 3468999999998742 345679999999999999
Q ss_pred CCHHHHHHHHHhhCCCC----CccHHHHHHH-HHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEE
Q 008534 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLl 318 (562)
+||+|||.|++.++.+. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998776542 2334443333 466899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCC
Q 008534 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (562)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~ 397 (562)
|||||+|||+.++.++++.|++++++ |+|||+++||++.+++++||+|++|++|+++++|+++++.+||+++|+.||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 89999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHH--HHHHHHhHHHhhh-hcCCCCCcH--
Q 008534 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE--AYETRVAENEKKK-LMAPIPLDE-- 472 (562)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~-~~~~~~~~~-- 472 (562)
.||+||++++++.+.+.+. ...+... .....+..+.+.+ .|++...+.+... ........+
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~------------~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKV------------PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccC------------CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 9999999999865432211 0000000 0011122221111 0111100000000 000000000
Q ss_pred -----HhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHH
Q 008534 473 -----EIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNL 546 (562)
Q Consensus 473 -----~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~l 546 (562)
..+.+.......|..|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|.|+|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r~g~l 457 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSRGGAL 457 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHH
Confidence 0000111233468899999999999999987 788888889999999999999999999975 568999999999
Q ss_pred HHHHHHhh
Q 008534 547 FCWSIQLP 554 (562)
Q Consensus 547 Ff~~~~~~ 554 (562)
||++++..
T Consensus 458 f~~~~~~~ 465 (1394)
T TIGR00956 458 FFAILFNA 465 (1394)
T ss_pred HHHHHHHH
Confidence 99988654
No 9
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-58 Score=553.76 Aligned_cols=367 Identities=26% Similarity=0.422 Sum_probs=281.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~-~~~~igyV~Q~~~l~~~lTV 246 (562)
.+.+|+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999976421 1389999999987542 36779999999999999999
Q ss_pred HHHHHHHHhhCCCC-------CccHHHH------------------------HHHHHHHHHHcCCCccccccccCcccCC
Q 008534 247 KETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 247 ~enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+|||.|++.++.+. ...++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1111111 1135678999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||..+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999976 4899999999998889999999999999999
Q ss_pred EEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHHHHHH
Q 008534 375 LYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYET 454 (562)
Q Consensus 375 v~~G~~~el~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 454 (562)
+|+|+.+++.+||+++|+.||++.|||||++++++...... ... .... ....... +.+.++|++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-------~~~---~~~~--p~~~~~~----~~~~~~~~~ 480 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-------YWA---DRNK--PYRYISV----SEFAERFKS 480 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-------hhh---ccCC--ccccCCH----HHHHHHHHh
Confidence 99999999999999999999999999999999986422100 000 0000 0000111 223333332
Q ss_pred HHhHH-HhhhhcCCCCCcHHhhhhcCCCCCCccCcHHHHHHHHHHHhHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCC
Q 008534 455 RVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSD 532 (562)
Q Consensus 455 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~ 532 (562)
..... ...++..+ .............+.|..++|.|++.|++|.++. +||+.+++.|+++.+++|+++|++||+++
T Consensus 481 s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~ 558 (1470)
T PLN03140 481 FHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTE 558 (1470)
T ss_pred cHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 21100 00000000 0000001111123468899999999999999987 67777788999999999999999999996
Q ss_pred CC--ChhhHHhHHHHHHHHHHHh
Q 008534 533 SK--SPKGLEDQVHNLFCWSIQL 553 (562)
Q Consensus 533 ~~--~~~~~~~r~g~lFf~~~~~ 553 (562)
.+ +....+.+.|++||++++.
T Consensus 559 ~~~~~~~~~~~~~g~lff~~l~~ 581 (1470)
T PLN03140 559 MHTRNEEDGALYIGALLFSMIIN 581 (1470)
T ss_pred CCCCcchhHHHHHHHHHHHHHHH
Confidence 42 1234567788888876653
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-56 Score=425.90 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=197.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| ++..||+|||++|++||+++|+|||||||||||+||.+ +. ++++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999998 46789999999999999999999999999999999997 43 456899999998763
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..+|+++|+|||+.+|||++||.||+.++...- ...++++.++++.++|+.+||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999986432 245788888899999999999988876 568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. ..+.+|||++|++|+|++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999875 5678999999999999999999886
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 3
No 11
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.6e-55 Score=498.76 Aligned_cols=364 Identities=25% Similarity=0.335 Sum_probs=270.3
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
++++++.++..+++.++|||++++.+||.+|+++..+.++|++-+......|.+++...|...-....+-...--..+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999988877766655555443111111111222335678
Q ss_pred hhhhhhhhhhhhhhhcccccCCC----------CccccccCCCCCCCCCccccccccCCCCCC---CCCCCCceeEEEEe
Q 008534 88 GAALSRASSASLGLSFSFTGFTM----------PPDEIADSKPFSDDDIPEDIEAGTRERPKF---QTEPTLPIYLKFTD 154 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~n 154 (562)
|+.+...+....|..+......+ |.......-..+...+-+.++..+...+.. .........++|+|
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~n 355 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRN 355 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEE
Confidence 87777766555555544433221 111111111111111112222222111111 01122345799999
Q ss_pred EEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 008534 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (562)
Q Consensus 155 vs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~ 230 (562)
|+|+|+ .+++.+||+|+||.|++|+.+||||||||||||++++|. |+++|. +|+|++||.++. +++|.+
T Consensus 356 V~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 356 VCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred EEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHHHhh
Confidence 999984 345778999999999999999999999999999999999 578765 899999999986 467999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 231 igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
||.|.|+|.||. .||+|||.|+........+.+..+.+.+++++.. |++.++|.+|...+. |||||||||+|||||
T Consensus 429 iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 429 IGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIARAL 504 (1228)
T ss_pred cCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHHHHH
Confidence 999999999996 6999999998422111112223333345566654 588999999987654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+++|+|||||||||+||++++..+.++|.++. .|+|.|+|+|++++ .+.+|+|++|++|+||+.|+|+|+++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998876 59999999999986 46799999999999999999999985
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=410.01 Aligned_cols=220 Identities=30% Similarity=0.566 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+|+|||+.| .++.+++|+||+|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++..
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 48999999998 36789999999999999999999999999999999995 5554 58999999999864
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+|++||||-|.-.|||++||.|||.+-..+. +.+++..+++++++++.+||++. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 58999999999999999999999999876553 45678888999999999999752 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||+. +.++++|||++|++|+++.+++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 999999999976 57899999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 74
No 13
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-52 Score=418.19 Aligned_cols=222 Identities=28% Similarity=0.464 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|++++|++.|..+ ......+|+||||+|++||+++|+|.||||||||+|||.+ +.. |++|+|.+||.++.
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 48999999988421 1234579999999999999999999999999999999996 444 56899999998875
Q ss_pred ---hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 ---~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+..|++||++||+++|+...||+||++|+..+. +.++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 246889999999999999999999999998765 46789999999999999999987775 5689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+|||+|||||+|||.+...|++.|+++.++ |.||++|||+++ .+.++||||.||++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999754 999999999975 57889999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8864
No 14
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-53 Score=487.20 Aligned_cols=359 Identities=24% Similarity=0.338 Sum_probs=276.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+-+++.++...++...|-|..++.+||++|+.+.--...|.+.+.....-+.++++-.|.---.+.+...-..-..+++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678889999999999999999999999998888888887777665555555444331112222222223334444
Q ss_pred hh-----------------hhhhhhhhhhhhcccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 89 AA-----------------LSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 89 ~~-----------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
+. +..+++.+.+...++++ +......++...|...|-.+.++... +.....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~---~~~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDS---TSGGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCC---CCCCccccceeEEE
Confidence 44 44555667777777766 55555555555555554443333221 11111233456799
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~ 227 (562)
|+||+|.|+ .+++.+||+|+|++|++|+.+||||||||||||++.+|. |+|+|. +|.|.+||.+++ +.+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999984 456889999999999999999999999999999999999 788765 899999999986 368
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
|+++|.|.|+|.||. .|++|||.||...-....+.++.+.+.+++++. +|++++||.+|++. .+||||||||++||
T Consensus 1063 R~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG-~QLSGGQKQRIAIA 1138 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERG-VQLSGGQKQRIAIA 1138 (1228)
T ss_pred HHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHh--cCcCcccCccCccc-CcCCchHHHHHHHH
Confidence 999999999999997 599999999921100011223334445666664 67999999999765 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||++||+||||||.||+||+++++.+.++|.+.. .|+|.|+|+|++++ .+.||.|+|+++|+|++.|+|+++++
T Consensus 1139 RAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1139 RAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999999999999999999999999876 59999999999986 68999999999999999999999986
No 15
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.3e-53 Score=477.79 Aligned_cols=362 Identities=24% Similarity=0.320 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++..+.-++..+.-.|.+...+|+++.+.++....++.++.......+.+..-.......-....|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667888999999999999999999999998888877666542222222222234444555666789999
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCC-C-CCCCCCCceeEEEEeEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERP-K-FQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~nvs~ 157 (562)
.++..+..+.|.+++|..+.-........... +..++...+..+..... . ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 99999999999999997754333222111100 11111111222211111 1 123444566899999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igy 233 (562)
+|. ..+.++|+|+|++|+|||.+||+|+||||||||+|+|+|+ +.| .+|+|++||.|+. ..+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~p-~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YKP-QQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CCC-CCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2344799999999999999999999999999999999985 544 5899999999986 368999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
|+||+.+|.. ||+||+.++......+.+..+...+.+++.+.. ++..++|.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~--lP~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIEN--LPMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh--cccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999975 999999987432111112223333445666654 588899999865 467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
|+|||||||||+||+.+++.|.+.|.++.. |+|+|+++|+++. .+.||+|+||++|+|+++|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999874 7999999999874 689999999999999999999999864
No 16
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-51 Score=473.45 Aligned_cols=366 Identities=32% Similarity=0.538 Sum_probs=291.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc-cCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~-~~~igyV~Q~~~l~~~lTV 246 (562)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|.+|+|.++|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23579999999987533 5779999999999999999
Q ss_pred HHHHHHHHhhCCCC----CccHHHHHH-HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeC
Q 008534 247 KETLTYAALLRLPN----TLTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (562)
Q Consensus 247 ~enl~~~~~~~~~~----~~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDE 321 (562)
+|+|.|+++++.+. +.++.++.+ ..+.+++.+||++|+||+||+...+++||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998762 233333333 5667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCCh
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~~~~~~~np 400 (562)
+|.|||+.++.++++.|+++++. +.|++++.|||+.+++++||+|++|.+|+++|+|+.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999865 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCchhhhhhccccccccccCCCCChhhHHHHHHH--HHHHHHhHHHhhhhcCCCCCcHHhhhhc
Q 008534 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE--AYETRVAENEKKKLMAPIPLDEEIKAKV 478 (562)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (562)
|||+.++++..... . ....... ......+.+..+++.+ .|.+... ++..+ .+.....+.
T Consensus 367 ADfLt~vts~k~~~-~----------~~~~~~~-~~~~~~~~ef~~~~~~s~~~~~l~~-----~l~~~--~~~~k~~~~ 427 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQE-Q----------YWNKRSK-PYPYTSVSEFAEYFLNSEDYAKLKK-----ELSKP--YDKSKKHKA 427 (1391)
T ss_pred HHHHHHhhcCcccc-c----------cccccCC-CcccCCHHHHHHHHhcchhhHHHHH-----Hhcch--hhhhhccch
Confidence 99999998721110 0 0000000 0011112333333321 1221111 11111 111111122
Q ss_pred CCCCCCccCcHHHHHHHHHHHhHHHh-hcchhHHHHHHHHHHHHHHHHHHhhCCCCCChhhHHhHHHHHHHHHHHh
Q 008534 479 SSPKRNWGASWIQQYTILFRRGIKEH-RHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQVHNLFCWSIQL 553 (562)
Q Consensus 479 ~~~~~~~~~s~~~Q~~~L~~R~~~~~-r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~r~g~lFf~~~~~ 553 (562)
....+.|..++|.|++.|+.|.|... ||..++..++++.+++|+|+|++||+++-++..+.+.|.|+|||.+++.
T Consensus 428 al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~ 503 (1391)
T KOG0065|consen 428 ALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFN 503 (1391)
T ss_pred hhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHH
Confidence 34456789999999999999999875 5555666899999999999999999996346678999999999998753
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-50 Score=392.95 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|++++|+++| +++.|++||||+|++||+++||||||||||||||+|.|.+. |.+|+|.++|.++..
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 57889999999999999999999999999999999999664 568999999998752
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++++|++||+-.||..+||+||+.|..+-. ...+++..++.+..-|+.+||+.. +.+.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46789999999999999999999999976533 246777888888888999999865 1234678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
+||++|||||+.+|+|||+||||+||||.++..+.++++++.+. |.|+|+||||+.+ ++..||||++|.+|+|++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 9999999999875 789999999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
No 18
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-50 Score=417.23 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=198.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| ++..+|+|||++|+.||+++|+||||||||||||+|+|+. .+++|+|.++|.+++. .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCh
Confidence 58999999998 1222999999999999999999999999999999999953 3568999999999874 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.+|.||+|||+..|||+|||+|||.|+...+ ..++++.++++.++.+.++|.+..|+. +++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 5688999999999999999999999998765 457888899999999999999988764 67999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||+||++|+|...|+|.++.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999765 899999999964 5788999999999999999999999854
No 19
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-50 Score=413.05 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=198.4
Q ss_pred eEEEEeEEEEEeecccCCcc-ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~-~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.++++||+++| + .+.+|+||||+|++|+++||+||||||||||+|+|+|.+. +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 3 4789999999999999999999999999999999999664 468999999998764
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..+++||||+|++.+++.+||+|||.|.+.++... ....+++++++++.++|.+..++ .+++||+||||||
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56788999999999999999999999998887432 24556789999999999874444 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+||+||+.+|+||||||||+||||.++.++++.|++++++| +|||++||.+. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 47888999999999999999999998
Q ss_pred HHHHHh
Q 008534 384 MAYFSS 389 (562)
Q Consensus 384 ~~~f~~ 389 (562)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776543
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-50 Score=421.20 Aligned_cols=233 Identities=27% Similarity=0.474 Sum_probs=205.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||++.| ++..+|+|||++|++||+++|+|||||||||||++|+|. .. +++|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-e~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-EQ-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCceEEECCEECCCCC
Confidence 369999999998 367899999999999999999999999999999999994 33 568999999999874
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..+|.||+|||+..|||+|||+||+.|+...+ ....+++.++++.++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 45789999999999999999999999998733 234567788899999999999986665 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +.+.++|||+||++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999754 999999999965 577999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHH
Q 008534 385 AYFSSIGCSPQIAMNPAEFLLD 406 (562)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~ 406 (562)
..|.+.-.|+|+-+
T Consensus 226 --------~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 --------ERPATRFVADFIGE 239 (352)
T ss_pred --------hCcchHHHHHHhCc
Confidence 33555555666643
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=395.72 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+++++|++.| ....+|+||||+|.+||+++|+||||||||||||+|+|... +++|+|.++|.++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 24789999999999999999999999999999999999543 5689999999998 4456
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..++||||++.|||.+||+||+.++..... .++++.++++.++|+.+||.+..+. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 779999999999999999999999986642 4566677799999999999987765 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
||+.+|+||+||||+++||+.++..+.+.|.++.+ .++||++||||..+ ...++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999999999999999999999875 48999999999865 56799999999984
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.5e-50 Score=402.78 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=193.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++|++|.| +++++|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 58999999999 36789999999999999999999999999999999998654 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
+++.+++|||||.+.....+||+|-+.++..-+.. .....+++++.+.++|+.+|+.+.+++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 35678899999998777789999999998543211 11223445567899999999999888754 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|.|||||+++|+||||||||+.||...+.++++.++++++ +|+|||+++||++- ..++||++++|++|++++.|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999984 59999999999875 679999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-49 Score=387.80 Aligned_cols=210 Identities=35% Similarity=0.573 Sum_probs=180.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|... .....+|++|||+|++||+++|+|||||||||||++|.|.. .| ++|.|.++|.++..
T Consensus 2 i~~~~v~k~y~~~----~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLG----GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KP-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccC----CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CC-CCceEEECCEEcCcCCHH
Confidence 6789999988422 12367999999999999999999999999999999999854 34 68999999988752
Q ss_pred ---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+ +++||||||+.+|+|++||+||+.+++.+.. ........++.++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 4679999999999999999999998775542 2232556678889999999866552 24689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+|||.||||.+||+.+...|++.|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999994
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-49 Score=393.22 Aligned_cols=219 Identities=31% Similarity=0.551 Sum_probs=189.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++|+++.|. ..++|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.+..+..
T Consensus 3 ~~i~v~nl~v~y~--------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG--------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC--------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 3699999999992 2269999999999999999999999999999999999664 56899999999876532
Q ss_pred -cCcEEEEccC---CCCCCCCCHHHHHHHHHhhCCC--CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 228 -~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+.+||||||. +.-|| +||+|.+..+...+.. ... .+.+.+.+.++|+.+|+.+..|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4679999995 45577 7999999987543321 112 23346789999999999999988765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||.|||||+.+|++|+|||||+|+|+.++..|++.|++++++|+||++|+||+.. +.++||+|+.| ++++++.|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999875 78999999999 68899999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8753
No 25
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.5e-51 Score=453.62 Aligned_cols=356 Identities=24% Similarity=0.319 Sum_probs=256.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..+..++..++..+...|.....+++++|+.+..+.+++.+..........+.....+...........-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788899999999999999999999999999998888876655544321100111111000000000111223456
Q ss_pred hhhhhhhhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.+...+..+.|.+.+|..+.......... +.+...+.++.+.... . ........++
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~--~~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP----D--PLKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC----C--CCCCCCCeEE
Confidence 6666666667777766666544332221111 1111111111111110 0 0111223599
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~ 227 (562)
|+||+|.|+ +++++|+|+||+++|||.+||+||||||||||+++|+| +++| .+|+|.+||.+++ ..+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25689999999999999999999999999999999996 6655 5899999999986 367
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
|++|+||+|++.+|. .||+|||.++......+.+.++.+.+.+++.+..+ ++++||.+|+. ...||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHH
Confidence 999999999999998 69999999984321111122222333345556554 78899999944 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+||+||||||+||+.++..|.+.++++. +++|+|+|+|++++ + +.||+|+||++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999975 4 5599999999999999999999986
No 26
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-49 Score=383.80 Aligned_cols=223 Identities=28% Similarity=0.498 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+..|+ .++.+|+||||+|++||++||+||||||||||||+|.| +.+ +++|+|.+||.++.
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccC-CCcceEEecccchhccch
Confidence 699999999983 36789999999999999999999999999999999998 444 45899999998764
Q ss_pred ---hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 ---~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.+|++|||+||+++|.+.++|.+|+..+...+.+. +...++.+..+.+.|+++|+.+.+.++. .+|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 246889999999999999999999999886443321 1233455667889999999988777654 589
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||+|||+|||||+.+|+|+|.|||+++|||.++..+++.|+++++ .|.|||++.|+... +.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999975 59999999999865 67899999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
|.|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999887544
No 27
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.7e-50 Score=459.38 Aligned_cols=351 Identities=20% Similarity=0.234 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.++.-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999888888776665544432221111111101111122222333456788
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y 159 (562)
.++..+..+.|.++++..+............. +..++...++............+.....++|+||+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y 461 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY 461 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEc
Confidence 88888888888887776543222111110000 00001111111000000000011112369999999998
Q ss_pred eecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEc
Q 008534 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (562)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~ 235 (562)
+ ..++++|+|+||+|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.. .+|++||||+
T Consensus 462 ~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 462 R------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred C------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 3 2346799999999999999999999999999999999984 44 458999999999863 5789999999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|++.+|+. |++|||.++.. .+++ ++.++++.. .+++.+||.+|+. ...||||||||++|||
T Consensus 534 Q~~~lf~g-TI~eNi~~~~~------~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialAR 601 (686)
T TIGR03797 534 QNGRLMSG-SIFENIAGGAP------LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIAR 601 (686)
T ss_pred cCCccCcc-cHHHHHhcCCC------CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHH
Confidence 99999975 99999998632 2222 233333333 3466789998865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+|||||||||+||+.++..+.+.|+++ ++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999876 5799999999864 57799999999999999999999864
No 28
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.2e-50 Score=463.50 Aligned_cols=354 Identities=22% Similarity=0.334 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
++.++.++..++..+...|.+++.+|||.|+.+..+.++|.+.+........+....++.+.........-..+..+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999999999999888776554333222222221111122222334455688
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCCCC----------CCCccccccccCCCCCCCCCC-CCceeEEEEeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPFSD----------DDIPEDIEAGTRERPKFQTEP-TLPIYLKFTDVTY 157 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~nvs~ 157 (562)
+.++..+..+.|.++++..+.....+......... .++.+-++..+...+.....+ .....|+|+||+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf 486 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSF 486 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEE
Confidence 88888888899988887776543322211100000 000011111100000000011 1223699999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igy 233 (562)
+|+ ..+++++|+|+||+|+|||.+||+||||||||||+++|+|. ++ +.+|+|.+||+|+.+ .++++|+|
T Consensus 487 ~Y~-----~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 487 SYP-----NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred ECC-----CCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 983 12246799999999999999999999999999999999984 54 458999999999853 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHH
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
|+|++.+|+ .|++|||.++.. ..+++ ++.++++..+ +++..||.+|+. ...||||||||++|
T Consensus 560 v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlal 628 (711)
T TIGR00958 560 VGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAI 628 (711)
T ss_pred EecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHH
Confidence 999999997 599999998632 12222 2333333333 466789988865 46799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|+|||||||||+||+.++..+.+ .. ...++|+|+|||+++. ...||+|++|++|+|++.|+|+++++
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 2358999999999864 57799999999999999999999875
No 29
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5e-50 Score=449.50 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++|+||+|.|. +++++|+|+||+|++|+.+||+||||||||||+++|+| ++ |. +|+|.+||.++.
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g-~~-p~-~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FL-PY-QGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc-CC-CC-CcEEEECCEecccCCH
Confidence 599999998662 24579999999999999999999999999999999998 45 54 899999999885
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
+.+|++|+||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|++.+||.+|+. ...||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHH
Confidence 3578899999999999975 9999999873 1 223333222 2334444 3577889999876 4569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+++|+|||||||||+||+.++..|.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999886 48999999999864 57799999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
|+++++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
No 30
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-49 Score=393.07 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~~ 225 (562)
+|.++|+++.+ +...+++|||++|+.||++||+|||||||||||++|+|+.. +++|.|.+||. +.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 57888898877 35679999999999999999999999999999999999653 56899999999 5443
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
...++||||||+..+|++|||.+||+|+...+ ....++...+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23478999999999999999999999998765 223456778889999999999987655 4678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++||||+.+|++||||||+++||...+.++.+.|+++.++ |.|+|++|||+. +++++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999975 5889999999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.9e-48 Score=399.54 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=194.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 24679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..+++||||||++.+++.+||+||+.|.+..+ ..+..+...++.++++.++|.+..++.+ ++|||||||||
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 35678999999999999999999999866543 2234444567889999999988777754 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999976 577899999999999999999999986
Q ss_pred HH
Q 008534 385 AY 386 (562)
Q Consensus 385 ~~ 386 (562)
..
T Consensus 227 ~~ 228 (306)
T PRK13537 227 ES 228 (306)
T ss_pred hc
Confidence 43
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.5e-50 Score=485.12 Aligned_cols=354 Identities=20% Similarity=0.258 Sum_probs=253.9
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhhhhh
Q 008534 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (562)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (562)
++.+++.+..++|.+...+|||+|+.+....++|.+..........+.....+.....+.+.+.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655433222222222221112233333344556789999988
Q ss_pred hhhhhhhhcccccCCCCc----------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 95 SSASLGLSFSFTGFTMPP----------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 95 ~~~~~g~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+..+.|.++.+..+.+.. ...+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 888888766643211100 0111111111111111110000000000000112236999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--------------------------- 211 (562)
|+. +++++||+|+||+|++|+.+||+||||||||||+++|+| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 831 224579999999999999999999999999999999997 56652
Q ss_pred --------------------------CccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC
Q 008534 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (562)
Q Consensus 212 --------------------------~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (562)
.+|+|++||.++. +.+|++||||+|+|.||+ .||+|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367899999999999996 699999999732 1
Q ss_pred ccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
.++++.+ +.+++++. .|++.+||.+|.. ...||||||||++|||||+++|+|||||||||+||+.++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 23344554 4688999999964 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcC----CeEE-EecChHHHHH
Q 008534 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (562)
Q Consensus 337 ~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~el~~ 385 (562)
.|.++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-49 Score=372.48 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=199.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|++.+++++|. ....+++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 478899999882 13349999999999999999999999999999999999765 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..|++||.++.+.-+|..||++|||.|.+++. .+.+.+.++++.++.+.|+|.++.|+.+| ++|.||||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 47899999998888999999999999988775 46778888999999999999999999875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.+. ++..+||+|++|++|++|+.|+.+++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999988999999999975 5888999999999999999999988765
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
.
T Consensus 223 r 223 (245)
T COG4555 223 R 223 (245)
T ss_pred H
Confidence 3
No 34
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.9e-48 Score=403.33 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|.. ....+++|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|.++..
T Consensus 1 mI~~~~lsk~y~~----~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQ----GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECC----CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 4789999999831 1123579999999999999999999999999999999999543 568999999998752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++||||||++.+|+.+||+||+.|+.... ..++.+..+++.++++.+||.+..+.. +.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 24678999999999999999999999976532 234556667889999999998876654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||++||+.++..+++.|+++.++ |.|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999865 899999999975 46789999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-48 Score=366.96 Aligned_cols=213 Identities=29% Similarity=0.472 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+|+||++.|. . ++++|+||||+|++||++-|+||||||||||||+|.+... ++.|+|+++|.++.+
T Consensus 1 mI~f~~V~k~Y~------~-g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP------G-GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC------C-CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999982 2 4779999999999999999999999999999999998543 568999999999853
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+|++||+||||..|.++.||+||++|+.... +.++.+.++++.++|+.+||.+..+. .+.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47899999999999999999999999998664 45678888999999999999987775 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+||||++.+|++||.||||.+|||..+.+|++.+.++.+.|.|||+.||+.. .+..+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999989999999999954 4556778999999999987654
No 36
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=373.12 Aligned_cols=232 Identities=24% Similarity=0.457 Sum_probs=194.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEeC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~~ 223 (562)
..++++||++.| +++.+|+|||+.|++++++||||||||||||||+++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 4778999999999999999999999999999999999 44432 2569999999998
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
.. .+|++||+|||.|+.|| +|++||+.|+.++.. ...++.++.++..|+...|= +..|.+ +....+|
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~L 150 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL--HKSALGL 150 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCC
Confidence 53 57999999999999999 899999999987653 22356677788888776652 222322 2345679
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|++|+
T Consensus 151 SGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVE 228 (253)
T ss_pred ChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEE
Confidence 99999999999999999999999999999999999999999999984 789999999976 4678999999999999999
Q ss_pred ecChHHHHHHHHhcCCCCCCCCChHHHH
Q 008534 377 FGKASEAMAYFSSIGCSPQIAMNPAEFL 404 (562)
Q Consensus 377 ~G~~~el~~~f~~~g~~~~~~~npad~~ 404 (562)
+|+.+++. ..|...-..||+
T Consensus 229 ~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 229 FGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred EcCHHhhh--------cCccHHHHHHHh
Confidence 99998873 345555555554
No 37
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.2e-49 Score=454.47 Aligned_cols=358 Identities=23% Similarity=0.330 Sum_probs=252.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++..+..++..+...|.+.+.+|+|+|+.+....+++.+..........+.....+.........+.-..+..+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888889999999999999999988888887766554332221111111100001111111223345678
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccC-C-CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTR-E-RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.+++|..+............. +..++...++..+. . .......+.....|+|+||+
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEE
Confidence 888888888888888776654322211111000 00001111111100 0 00000011123469999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ...+++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+|+.|+
T Consensus 471 f~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 471 FAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhccE
Confidence 9993 2345799999999999999999999999999999999984 44 458999999999863 5789999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. |++|||.++.. ..++++..+ .+++.++ .+++.+||.+|+. ...||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~-G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVR--RHPDGLDMQIGER-GRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHH--hCcccccceecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 122322221 2233333 3577889999865 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++. .+.||+|++|++|++++.|+|+++++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999864 8999999999864 578999999999999999999998764
No 38
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.4e-49 Score=455.01 Aligned_cols=354 Identities=23% Similarity=0.272 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.+++-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677788889999999999999999988888876655544332211100000000011111112233456788
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCC-CC-CCCCCCCCceeEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRE-RP-KFQTEPTLPIYLK 151 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ 151 (562)
.++..+..+.|.++++..+.......... +.....+.+.+....... .. .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 88888888888888776654322211110 111111111110000000 00 0000011234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
++||+|+|+ ..++++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999983 2346799999999999999999999999999999999985 44 458999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|++.+|+ .|++|||.++. + ..++++..+ .+++.++ .+++..||.+|+. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccC-CCCCCHHHHH
Confidence 899999999999997 59999999752 1 122222221 1223333 3466789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+++|+|||||||||+||+.++..+.+.|++ .++|+|++||+++. ...||+|++|++|++++.|++++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 56799999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
No 39
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.9e-47 Score=403.07 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +.+.+|+|+||++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 59999999998 24569999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+..++++++++.++|.+..++ ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999986543 23456667789999999999887765 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5788999999999999999999998853
No 40
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=403.11 Aligned_cols=218 Identities=28% Similarity=0.472 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.+||.+..+.. +++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHH
Confidence 3578999999999999999999999986532 234555667889999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 478899999999999999999999874
No 41
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.8e-49 Score=454.11 Aligned_cols=356 Identities=21% Similarity=0.246 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
++.++.+++-++..+...|.+...+|+|+++.+....+++.+..........+.....+.....+...+.-..+.-++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777788888999999999999999998888887766554333221111111000001111112233345688
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCC--CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRE--RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.+++|..+............. +..++...+...... .......+.....|+|+||+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEE
Confidence 888888888999888877654322211111000 000011111100000 00000111122369999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~ig 232 (562)
|+|. .++++|+|+||+|++|+.+||+||||||||||+++|+|. ++ +.+|+|++||.++. ..+|++||
T Consensus 481 f~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 481 YSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence 9982 245799999999999999999999999999999999984 54 45899999999875 35788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. ||+|||.++.. + ..++++.. ..+++.++ .++..+||.+|+. ...||||||||++||
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~-G~~LSgGQrQRialA 623 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEE-GSSISGGQKQRIALA 623 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 1 12222221 12333333 3467789999864 467999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++ +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 47999999999864 57899999999999999999999875
No 42
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.7e-49 Score=443.01 Aligned_cols=358 Identities=20% Similarity=0.269 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...+.+...+++|+++.+....++|.+..........+...........+.....-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999988888888666554332221000000000001111111112223456
Q ss_pred hhhhhhhhhhhhhhcccccCCCC----ccccccCC------CCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMP----PDEIADSK------PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+..+..+..+.|.+..+..+... ...+.... ..+..++....+..+.........+..+..++++||+|+
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~ 350 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFT 350 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEe
Confidence 66666677777776544433221 11111000 000001111111000000000001111236999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ ..++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+++.|+||
T Consensus 351 y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 351 YP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-YD-IDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred cC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 83 2246799999999999999999999999999999999985 43 458999999999853 568889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
||++.+|+ .|++|||.++. ++..++++..+ .++++++ .|++..||.+|+. ...||||||||++||||
T Consensus 423 ~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 423 SQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred ccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 99999997 59999999863 11123332222 1223333 2577889999865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999998754 799999999985 467899999999999999999999874
No 43
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=401.44 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||.++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..+++.++++.++|.+..+. ++..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999987543 23456667789999999999876654 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 477899999999999999999999874
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-47 Score=379.51 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999988642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.|+||+|++.+|+.+||+||+.++..... .....+..+++.++++.++|.+..++. +.+|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346779999999999999999999998753211 123444456788899999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999864 899999999976 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 753
No 45
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.9e-47 Score=400.34 Aligned_cols=218 Identities=26% Similarity=0.466 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc--cEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~--G~I~i~G~~~~~- 225 (562)
.|+++||+++| +.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCC
Confidence 58999999998 24569999999999999999999999999999999999543 568 999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.||||+|++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 24578999999999999999999999987543 234556667899999999998877654 579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+|||||+.+|+||||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999975 4788999999999999999999998
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
No 46
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-46 Score=395.69 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=193.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.||||||++.+++.+||+||+.+....+ .....+..+++.++++.++|.+..++.+ ++|||||||||
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 35678999999999999999999999765443 1233444556788999999988777654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999877999999999976 577899999999999999999999986
Q ss_pred HH
Q 008534 385 AY 386 (562)
Q Consensus 385 ~~ 386 (562)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
No 47
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-47 Score=377.72 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++++|++|+|+ .. ..+|+|+|++|++|+.++|+||||||||||+++|+|.+. +.+|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999982 12 689999999999999999999999999999999999664 45899999999865
Q ss_pred -hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 -~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++++||||+|+| .+|. -||.|.++|+.... .++.++.++++.++++.+|+.+..+. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25688999999997 5664 59999999997543 45677788999999999999987665 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+||.+|+.+|++|||||||||||+..+.++++.++++.++ |+|||++|||+. .+..+||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877 699999999976 47888999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 87754
No 48
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-49 Score=418.28 Aligned_cols=222 Identities=32% Similarity=0.540 Sum_probs=188.3
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..|+|+||+|+|. ++++||++|||+|++||.+||+|+|||||||++|+|.+ +++ .+|+|++||+++.
T Consensus 349 ~~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEV 418 (591)
T ss_pred CCcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhh
Confidence 34699999999982 35569999999999999999999999999999999995 554 5899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+.+|+.|||||||..||++ ||.+||.|+......+.+.+..+....++.+.. +++.+.|.+|++. ..|||||||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG-~~LSGGekQ 494 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERG-LMLSGGEKQ 494 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhcc-cccccchHH
Confidence 3578999999999999975 999999998532211112222233334555543 5889999999765 459999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+||||++++|+|+++|||||+||.+++.++++.+.+.. .++|+|+|.|+++. ...||+|++|++|++.+.|+|+|
T Consensus 495 rvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~l--l~~~DkI~~l~nG~v~e~gth~e 571 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLDL--LKDFDKIIVLDNGTVKEYGTHSE 571 (591)
T ss_pred HHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecchh--HhcCCEEEEEECCeeEEeccHHH
Confidence 9999999999999999999999999999999999999944 58999999999764 67899999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 572 ll~ 574 (591)
T KOG0057|consen 572 LLA 574 (591)
T ss_pred Hhh
Confidence 986
No 49
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.4e-46 Score=399.03 Aligned_cols=218 Identities=25% Similarity=0.443 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 24579999999999999999999999999999999999543 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..+.. +.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHH
Confidence 34578999999999999999999999986532 234555566788999999998777654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999765 899999999975 477899999999999999999999875
No 50
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=396.31 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|+++|+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 48899999998 24579999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++.|+||+|++.+||++||+||+.|+...... ...+..+..+++.++++.++|++..++ ++.+|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 356799999999999999999999998643110 123445566788999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 899999999975 477899999999999999999999875
No 51
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8e-49 Score=438.72 Aligned_cols=354 Identities=23% Similarity=0.319 Sum_probs=244.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++..++.++...|.+...+|+|+|+.+..+.+++.+......+...+.....+...........-..+.-++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888889999999999999999999998888888766655443332111111110000000000111123455
Q ss_pred hhhhhhhhhhhhhhcccccCC-C----Ccccccc---C---CCCCCCCCccccccccC-CCCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFT-M----PPDEIAD---S---KPFSDDDIPEDIEAGTR-ERPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~-~----~~~~~~~---~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~nvs 156 (562)
+.+. .+..+.|.++++..+. + +...+.. . ...+..++.+.++..+. ..+.....+.....|+|+||+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~ 345 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVS 345 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEE
Confidence 5443 3555666655543321 1 1110000 0 00000111111111110 000000001122469999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ..++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++||.++.+ .+|+.|+
T Consensus 346 f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 346 FTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhhee
Confidence 9983 1235799999999999999999999999999999999984 44 458999999999763 5788999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC------CccccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
||+|++.+|+. |++|||.++.. ..++ +++.++++..++ ++++||.+|+. ...||||||||++|
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAAP-----NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCCC-----ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 99999999975 99999998631 1222 234555555554 56678988865 56799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+++|+||||||||++||+.++..+.+.|+++. +++|+|+++|+++. ...||+|++|++|++++.|+|+++++
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999986 48999999999864 46799999999999999999999874
No 52
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-47 Score=370.53 Aligned_cols=221 Identities=29% Similarity=0.436 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|..++ ...++|+||||+|.+||+++|+|+||||||||.++|+|.. .+++|+|.++|.++..
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~--~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE--KPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCCceEEECCcccCcccc
Confidence 689999999984211 1236999999999999999999999999999999999954 3568999999987754
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 --~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.|.+||||| .+-|..||++.|.-+... .+.++.+ +++.++++.+||++.. .++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSF----LDRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHH----HhcCchhcChhHH
Confidence 3577899999998 488899999999877543 1233333 3488999999998643 2357889999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++||||||||+||+..+.+|++.|.++.++ +.|.|+||||.. .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999764 889999999975 47889999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 98864
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=370.31 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999988 24579999999999999999999999999999999999643 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4567999999999999999999999875432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999976 46788999999999999999987763
No 54
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.4e-46 Score=387.44 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 68999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.+|||+|++.+++.+||+||+.+..... ..+.....+++.++++.++|.+..++. +++|||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 34678999999999999999999998754332 123334445677889999998777765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999877999999999976 4778999999999999999999998764
No 55
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=396.93 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 469999999998 24579999999999999999999999999999999999543 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+|||.|+...+ ..++.+..+++.++++.++|.+..+. ++.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986543 23455566788999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999865 4899999999975 578899999999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
No 56
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.7e-48 Score=431.91 Aligned_cols=355 Identities=25% Similarity=0.323 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.++.++..++..+...|.+...+|+|+|+.+....++|.+..........+.....+.....+.....-..+..+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677778888899999999999999988888866655433222111111111011111111122334557888
Q ss_pred hhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEe
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~ 160 (562)
++..+..+.|.++++..+............ .+..++...++..+...+. ...+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCCCCCCeEEEEEEEEEcC
Confidence 888888888888877665432211110000 0000111111111100000 01111123699999999983
Q ss_pred ecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEcc
Q 008534 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (562)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q 236 (562)
..++++|+|+||++++|+.++|+||||||||||+++|+|.+ + +.+|+|.+||.++.. .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 22457999999999999999999999999999999999854 3 458999999998753 46788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
++.+|+. |++||+.++.. ..++++. ...++++++.+ ++..||.+|.. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999985 99999986421 1222221 12234455544 56678887754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
++|++|||||||++||+.++..+.+.|+++..+|+|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998756899999999986 357899999999999999999998754
No 57
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.7e-46 Score=369.33 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcCh
Confidence 378999999982 112469999999999999999999999999999999999543 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.++|++|++.+|+.+||+||+.++.... .......++++.++++.+||.+..++. +.+||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24578999999999999899999999875432 122334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999777899999999975 46678999999999975
No 58
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=393.06 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|.. ....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 mi~i~~l~~~y~~----~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQ----GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCC----CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCH
Confidence 3789999999821 0124579999999999999999999999999999999999653 568999999998752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.||||+|++.+|+.+||+||+.++.... ..+..+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 23678999999999999999999999876432 233445556788999999998766654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999764 899999999975 46788999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8874
No 59
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-46 Score=367.90 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4689999998 23579999999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... ........+++.++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875432 122344456688899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999976 4899999999975 467889999999999998765
No 60
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3e-46 Score=372.28 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 23569999999999999999999999999999999999653 568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC-------ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
. .++.++||+|++.+|+.+||+||+.++........ .......+++.++++.+||.+..++. +++||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01233455788899999998766554 56899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877899999999976 46788999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
No 61
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.5e-48 Score=441.64 Aligned_cols=356 Identities=23% Similarity=0.327 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..+++-++..+...|.+.+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666677888889999999999999999999988887766554332211111010000000111112233456888
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCC-CCCCCCCCceeEEEEeEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERP-KFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~nvs~~ 158 (562)
.++..+..+.|.+.+|..+............ .+..++...++....... .....+.....|+++||+|+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~ 464 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFR 464 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEE
Confidence 8888888888888877665322211110000 000111111111100000 00011222346999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ ...+++|+|+||+|++|+.+||+|+||||||||+++|+|. ++ +.+|+|++||.++.+ .+|+.|+||
T Consensus 465 y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 465 YA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-YT-PQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred cC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 83 2245799999999999999999999999999999999985 44 458999999999863 578899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
+|++.+|+ .|++|||.++. + ..+.++.. ..+++.++. +++.+||.+|+. ..+||||||||++||||
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRIAIARA 607 (694)
T ss_pred ccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999998753 1 12222222 122333433 466789988765 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+||||||||++||+.++..+.+.|+++. .++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 58999999999864 46799999999999999999999874
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-46 Score=395.27 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|.+. +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.|+||+|++.+|+++||+||+.|+...+ .....+..+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986532 223445566789999999998766654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 477899999999999999999998875
No 63
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-46 Score=381.22 Aligned_cols=234 Identities=31% Similarity=0.448 Sum_probs=193.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+|.|... ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48899999998310 0012469999999999999999999999999999999999653 56899999999874
Q ss_pred ----hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..+++.||||+|++ .+|+ .||.||+.|+.... ..++.+.++++.++++.++|. +..++ .++.||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13467899999987 5675 69999999876432 234555667788999999995 34443 457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46688999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCCCC
Q 008534 378 GKASEAMA---YFSSIGCSPQIA 397 (562)
Q Consensus 378 G~~~el~~---~f~~~g~~~~~~ 397 (562)
|+++++.. .+...|+.+|..
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChH
Confidence 99998743 344566666543
No 64
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-46 Score=371.81 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||++.| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48899999998 23579999999999999999999999999999999999543 468999999998743 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++.++||+|++.+++.+||+||+.++...... .........+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 346799999999999889999999987533210 0012233445678899999997665554 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999765 899999999975 467889999999999999999988763
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-46 Score=370.06 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+|++||+.++...+ ..........+.++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23567999999999999899999999875432 123344456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 763
No 66
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=5.4e-46 Score=369.51 Aligned_cols=216 Identities=27% Similarity=0.512 Sum_probs=186.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++.+|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999998642
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
. .++.++|++|++.+|+.+||+||+.+....+ .........++.++++.+++.+..++. +..|||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 2456999999999999999999999865332 122334455778899999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 477899999999999999999988763
No 67
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=379.45 Aligned_cols=222 Identities=27% Similarity=0.470 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998310 0112579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCCh
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (562)
..+++||||||++ .+| .+||+||+.|+.... ...+.+..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 234555667788999999996 44444 4578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 46678999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++.+
T Consensus 227 g~~~~~~~ 234 (287)
T PRK13637 227 GTPREVFK 234 (287)
T ss_pred CCHHHHHh
Confidence 99988753
No 68
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-46 Score=366.39 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+++.|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .++
T Consensus 1 l~~~~l~~~~~~----~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~-~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGG----GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG-PGP 73 (220)
T ss_pred CeEEEEEEEcCC----CCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc-ccC
Confidence 468999998821 0011579999999999999999999999999999999999643 468999999998753 467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++||+|++.+|+.+||+||+.++...+ ........+++.++++.++|.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 7999999999999899999999875432 123334456788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc--CCeEEEecChH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (562)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+...||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-46 Score=364.64 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+++.| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4689999988 24579999999999999999999999999999999999543 5689999999987655667
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+||+||+.+....+ ........+++.++++.+++.+..++. +.+|||||||||+||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999899999999865432 123344456788899999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998765
No 70
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.5e-48 Score=431.89 Aligned_cols=350 Identities=18% Similarity=0.231 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCccccccccee-eeeecccccccccccccch
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (562)
..+..++...+......+.....+|+|+|+.+....+++.+................+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777777888888899999999987777777755443322211000000000 0000000110111111122
Q ss_pred hhhhhhhhhhhhhhcccccCCCCc----cccccC------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPP----DEIADS------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+. ...+..+.|.++++..+.... .++... ...+..++...++..... ......+.....++|+||+|.
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~-~~~~~~~~~~~~i~~~~v~f~ 349 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ-YGNDDRPLQSGRIDIDNVSFA 349 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CCCCccCCCCCeEEEEEEEEE
Confidence 22 345666777766665432211 111100 000000011111100000 000001111235999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ .++++|+|+||+|++||.+||+|+||||||||+++|+|. ++ |.+|+|.+||.++.. .++++|+||
T Consensus 350 y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 350 YR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred eC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 83 135699999999999999999999999999999999985 44 458999999998853 578999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+|++.+|++ |++|||.++. ..+++ ++.++++.+| |++.+||.+|.. ...||||||||++||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqrQRialA 488 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQKQLLALA 488 (592)
T ss_pred ccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999986 9999999863 11222 2344444444 466788988864 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~--l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLST--IVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999864 6999999999853 56799999999999999999999864
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=6.2e-46 Score=366.19 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||++.|. ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 47899999982 112579999999999999999999999999999999999543 568999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++||+|++.+++.+||+||+.+..... ........+++.++++.++|.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998899999999865432 123334455788899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. +.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE-AEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH-HHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 6999999999764 6678999999999999999998764
No 72
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.1e-48 Score=429.84 Aligned_cols=354 Identities=20% Similarity=0.235 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.++..++..+...|.+.+.+|+|+|+.+....++|.+..........+.....+...........-..+..+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888889999999999999999998888887655443322211111111000000111111233445778
Q ss_pred hhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y 159 (562)
.++..+..+.|.++++..+............ .+..++...++..+...+.....+.....++++|++|+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y 323 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTY 323 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEEC
Confidence 8888888888888777665432221110000 000001111111000000000011112369999999998
Q ss_pred eecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEc
Q 008534 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (562)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~ 235 (562)
+ ..++++|+|+||++++|++++|+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+++.|+||+
T Consensus 324 ~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 324 P------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-FD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred C------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 3 1245799999999999999999999999999999999985 43 458999999998753 5678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|++.+|+. |++|||.++.. ..++++. .++++.. .+++..||.+|+. ...||||||||++|||
T Consensus 396 q~~~lf~~-ti~~Ni~~~~~-----~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 396 QTPFLFSD-TVANNIALGRP-----DATQQEI----EHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIAR 464 (569)
T ss_pred cCCeeccc-cHHHHHhcCCC-----CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHH
Confidence 99999975 99999987631 1223222 2222222 4567788988765 5679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+||||||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999875 58999999999864 56799999999999999999999864
No 73
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=7.6e-46 Score=365.05 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||+++|..+ ....++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998210 011269999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999899999998865432 123444556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999777999999999975 467889999999999998764
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.2e-46 Score=368.61 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCCh-
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~~- 225 (562)
|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.++. ++.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4689999988 245799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.++|++|++.+| .+||+||+.++..... .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2456799999999888 6899999998754321 11122245667889999999866554320 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+..+||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999976 46778999999999999999987
Q ss_pred HH
Q 008534 381 SE 382 (562)
Q Consensus 381 ~e 382 (562)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 75
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.2e-47 Score=428.63 Aligned_cols=354 Identities=21% Similarity=0.266 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.+..++...+..+...+.....+|+|+++.+....+++.+................+.........+.-..+..+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677778888899999999999999888888866654433211100001111001111111123334567777
Q ss_pred hhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEe
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~ 160 (562)
++..+..+.|.++++..+............ .+..++.+.+...+.........+.....++++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 777888888887777654332221111000 0000111111111100000000111123699999999983
Q ss_pred ecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEcc
Q 008534 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (562)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q 236 (562)
..++++|+|+||+|++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.++. +.++++|+||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999954 3 45899999999875 356788999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
++.+|+. |++|||.++.. +..+++ ++.++++.+| |++..||.+|+. ...||||||||++||||
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~~----~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGRT----EQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCCC----CCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 99999997631 122222 2333444333 466788998865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||++. ....||+|++|++|++++.|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999885 4799999999975 468899999999999999999999863
No 76
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-45 Score=381.62 Aligned_cols=218 Identities=25% Similarity=0.454 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 48899999998 24579999999999999999999999999999999999643 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.+||+||++.+++.+||.||+.+.+..+ .....+..+++.++++.+||.+..++. ++.|||||||||+
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 223344456788999999998877765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999976 4788999999999999999999999765
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
.
T Consensus 222 ~ 222 (301)
T TIGR03522 222 A 222 (301)
T ss_pred h
Confidence 3
No 77
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.1e-45 Score=362.77 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4689999988 23579999999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... .....+..+++.++++.+|+.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 457999999999998899999999875432 123344456788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467789999999999999876
No 78
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-46 Score=350.20 Aligned_cols=214 Identities=26% Similarity=0.460 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|.+.+|.|.|. ..==.++++|++||++||+||||||||||||+|+|... |.+|+|++||++.+. ..
T Consensus 2 l~L~~V~~~y~----------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYG----------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeC----------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 56788999982 12246789999999999999999999999999999543 458999999999763 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
.+-++++||+.+||.++||.+|+.++..-.+ .. .++.+++++.++..+||..+.+.+ +.+|||||||||+||
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 6789999999999999999999999863221 12 345566789999999999887765 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|+++-+||+||||+|+|||.-+.+++..+.+++. ++.|++|+||+|++ +.+++|+++++++|+|.+.|+.++++
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999975 48999999999875 77899999999999999999988764
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-46 Score=369.74 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=183.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|. .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999872 12579999999999999999999999999999999999543 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-----CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.+++.++||+|++.+|+.+||+||+.++..... ..........+++.++++.++|.+..++ .+.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 245679999999999998999999987642110 0011112334567889999999765554 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +..+||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 8999999999764 677999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988753
No 80
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.7e-45 Score=370.05 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 23569999999999999999999999999999999999643 568999999988641
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ---------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
.+++.++||+|++.+++.+||+||+.++..... ........+++.++++.+||.+..++ .+.+|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 235679999999999988999999988643111 12334445668889999999866554 35789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||+|++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4678899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
No 81
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.5e-46 Score=383.20 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=182.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~~lT 245 (562)
++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++.. .+++.+|||+|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 568999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+||+.+.+..+ ........+++.++++.++|.+..++. ++.|||||||||+|||||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 223444556788999999998777665 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~ 386 (562)
||+.++..+++.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++...
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999988654
No 82
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=378.15 Aligned_cols=232 Identities=27% Similarity=0.451 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38899999998310 0012569999999999999999999999999999999999653 568999999998731
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.||||+|++ .+|+ .||+||+.|+.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 3456799999996 4664 69999999875432 234445556788999999996 44454 357899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+..+||||++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999976 4778899999999999999
Q ss_pred ecChHHHHH---HHHhcCCCCC
Q 008534 377 FGKASEAMA---YFSSIGCSPQ 395 (562)
Q Consensus 377 ~G~~~el~~---~f~~~g~~~~ 395 (562)
.|+++++.. .+...+..+|
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCC
Confidence 999988742 2334444433
No 83
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-45 Score=368.82 Aligned_cols=216 Identities=30% Similarity=0.541 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
++++||+++|. + +.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRYG--------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEeC--------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 46899999982 2 569999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc--cccccccCcccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+|+.+||+||+.++.... ........+++.++++.++|.+ ..++ .+.+|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34567999999999999899999999865432 1233444567889999999975 4444 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999764 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 84
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-45 Score=367.45 Aligned_cols=218 Identities=29% Similarity=0.501 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 70 (240)
T PRK09493 1 MIEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKV 70 (240)
T ss_pred CEEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCh
Confidence 37899999998 2457999999999999999999999999999999999954 3568999999998752
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+++.+||+||+.++..... ........+++.++++.+||++..+.. +..|||||||
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (240)
T PRK09493 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQ 143 (240)
T ss_pred hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHH
Confidence 345679999999999988999999988642111 123344556788999999997666654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQV 222 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999976 4667899999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 223 ~~ 224 (240)
T PRK09493 223 LI 224 (240)
T ss_pred Hh
Confidence 64
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.2e-45 Score=364.52 Aligned_cols=214 Identities=28% Similarity=0.500 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999987 23579999999999999999999999999999999999643 568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChhHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
. .++.++|++|++.+|+.+|++||+.++..... ......++.++++.+ ++.+..++. ++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122334566777777 466555543 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
++|||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||++||++. .+..+||+|++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999999999998775
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 3
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.6e-46 Score=370.17 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. .++++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR02315 1 MLEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRG 71 (243)
T ss_pred CeEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCH
Confidence 378999999871 14569999999999999999999999999999999999543 568999999998642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC--C---CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
.+++.++||+|++.+|+.+||+||+.++..... . .........+++.++++.++|.+..+.. +..|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 146 (243)
T TIGR02315 72 KKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQL 146 (243)
T ss_pred HHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccC
Confidence 246779999999999998999999987532100 0 0011223455788899999997665543 5689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +.++||++++|++|+++
T Consensus 147 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~-~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 147 SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL-AKKYADRIVGLKAGEIV 225 (243)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCeEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999754 8999999999764 66889999999999999
Q ss_pred EecChHHH
Q 008534 376 YFGKASEA 383 (562)
Q Consensus 376 ~~G~~~el 383 (562)
+.|+++++
T Consensus 226 ~~~~~~~~ 233 (243)
T TIGR02315 226 FDGAPSEL 233 (243)
T ss_pred ecCCHHHh
Confidence 99998775
No 87
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.7e-47 Score=427.52 Aligned_cols=355 Identities=22% Similarity=0.294 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..+++..+.++...+.+...+++|.|+.+..+.+++.+................+.....+.....-..+..+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999998887777776554443321110000111101111112222233345677
Q ss_pred hhhhhhhhhhhhhcccccCCCCccc----cccCCC------CCCCCCccccccccC--CCCCCCCCCCCceeEEEEeEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPPDE----IADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~nvs~ 157 (562)
.++..+..+.|.++.+..+...... +..... ....++....+..+. ..+.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 7777777777777766554322111 110000 000000000000000 0000000111123699999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igy 233 (562)
+|+ ..+++|+|+|++++||++++|+|+||||||||+++|+|. ++ +.+|+|.+||.++.+ .+++.|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-FD-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 983 134699999999999999999999999999999999985 44 458999999998863 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|+|++.+|+ .|++|||.++. + ..++++... .+++.++. +++..||.+|+. ...||||||||++|||
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCccccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 999999997 49999999863 1 122222221 12223332 466788888764 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||+++|+|||||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999975 467899999999999999999999864
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=373.04 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 689999999982 13469999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.||||+|++. .++.+||.||+.|+.... .......++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34567999999973 334579999999875322 233444556788999999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999976 46688999999999999999998654
No 89
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.2e-45 Score=372.84 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++||+|++.+|+.+||.||+.++..... ........+++.++++.++|.+..++. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 135679999999999998999999998643211 123334455678889999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999975 46788999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
No 90
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=379.51 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=191.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998311 0113469999999999999999999999999999999999643 568999999987632
Q ss_pred ------------------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccc
Q 008534 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (562)
Q Consensus 226 ------------------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (562)
.+++.|+||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999997 5776 59999999875322 234445556788999999996 344
Q ss_pred cccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
++ .+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ .+...||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45789999999999999999999999999999999999999999999999877999999999975 3668899
Q ss_pred EEEEEcCCeEEEecChHHHHH---HHHhcCCCCC
Q 008534 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (562)
Q Consensus 365 ~i~vL~~G~iv~~G~~~el~~---~f~~~g~~~~ 395 (562)
+|++|++|++++.|+++++.. .+...+..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999988742 2334455443
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-45 Score=374.45 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|.. ...+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999821 113469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++||+|++. +++.+||+|||.|+.... ....++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 666789999999875432 234555566788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 9999999999764 4 5799999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 227 ~~ 228 (279)
T PRK13650 227 LF 228 (279)
T ss_pred HH
Confidence 65
No 92
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.3e-45 Score=392.34 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 25679999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.++++||||+|++.+++.+||+||+.++....... ........+++.++++.+++.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988899999999864321100 001233456788999999998777664 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+++|+||||||||+|||+.++.++++.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877899999999976 47789999999999999999999985
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
No 93
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.9e-45 Score=362.23 Aligned_cols=209 Identities=32% Similarity=0.541 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~----~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGG----GGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecC----CCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 468999999821 0011579999999999999999999999999999999999643 568999999998742
Q ss_pred ---h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
. .++.++||+|++.+|+.+||+||+.++...+ ........+++.++++.+||.+..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 2467999999999999899999999876432 122333456788899999998766554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999977 58999999999764 54 8999999999974
No 94
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.4e-45 Score=359.15 Aligned_cols=206 Identities=32% Similarity=0.540 Sum_probs=178.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||+++| .++++|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4689999998 24579999999999999999999999999999999999653 568999999988742 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+++.+||+||+.++.... .. ..+++.++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 567999999999998999999999875432 11 134577889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+...||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999976 466789999999999998765
No 95
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-45 Score=376.84 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||++.|..+. .....+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 489999999983110 112469999999999999999999999999999999999653 45899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc
Q 008534 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (562)
Q Consensus 225 ------------------------~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (562)
..+++.||||+|++ .+| ..||+|||.|+.... ...+++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467799999986 455 479999999876432 234556667889999999
Q ss_pred CCC-ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
||. +..++ .+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999975
Q ss_pred HHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.++||+|++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
No 96
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.4e-45 Score=386.48 Aligned_cols=206 Identities=26% Similarity=0.463 Sum_probs=182.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc----cCcEEEEccCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDVL 240 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~----~~~igyV~Q~~~l 240 (562)
.+.+|+|+||+|++||+++|+||||||||||+++|+|... +++|+|.++|.++.. .+ ++.|+||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 5679999999999999999999999999999999998543 568999999998753 23 5789999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
||++||+||+.|+.... ...+++..+++.++++.+||.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 23455667788999999999876665 45789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||++||+.++..+.+.|.++.++ |+|||++||++. ++.++||+|++|++|++++.|++++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999999999999754 899999999976 4678999999999999999999998753
No 97
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.4e-45 Score=362.05 Aligned_cols=217 Identities=31% Similarity=0.541 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~ 70 (236)
T TIGR03864 1 ALEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPR 70 (236)
T ss_pred CEEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCCh
Confidence 37899999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 142 (236)
T TIGR03864 71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVE 142 (236)
T ss_pred hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHH
Confidence 23457999999999888899999998765432 123334455688899999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++++.|+++++.
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999975 58999999999865 44 59999999999999999988775
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 221 ~ 221 (236)
T TIGR03864 221 G 221 (236)
T ss_pred H
Confidence 3
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.3e-45 Score=365.23 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-----ccEEEECCEeC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPY 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~-----~G~I~i~G~~~ 223 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +. +|+|.++|.++
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 37899999998 23469999999999999999999999999999999999653 33 89999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccc
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFV 293 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~ 293 (562)
.. ..++.|+|++|++.+|+ +||+||+.+....+. .....+..+++.++++.+||. +..++ .+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 142 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SA 142 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Cc
Confidence 42 24567999999999998 899999998754321 122344456788899999997 44443 45
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|+
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999976 489999999976 4678899999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
No 99
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.4e-45 Score=358.62 Aligned_cols=207 Identities=32% Similarity=0.513 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++|. .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (214)
T TIGR02673 1 MIEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRG 71 (214)
T ss_pred CEEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCH
Confidence 378999999882 13579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.++|++|++.+|+.+||+||+.++.... .......++++.++++.++|.+..++. +..||||||
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 143 (214)
T TIGR02673 72 RQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQ 143 (214)
T ss_pred HHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24567999999999998899999999875432 122334456788999999998665554 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999777999999999975 4677899999999985
No 100
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-45 Score=372.07 Aligned_cols=218 Identities=29% Similarity=0.526 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||+++|. .++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 13569999999999999999999999999999999999543 56899999999873
Q ss_pred --hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..+++.||||+|++. ++ ..||+||+.++.... ..+..+..+++.++++.+||.+..++. ++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 135678999999973 44 479999999865432 234445556788999999998766654 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++. +..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~-~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 8999999999764 667899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1e-44 Score=366.35 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 568999999987631
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-cccccC
Q 008534 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (562)
Q Consensus 226 --------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (562)
.+++.++||+|++.+++.+||+||+.++..... ........+++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 345679999999999998999999987542111 123444566788999999997643 33
Q ss_pred cccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.+.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35789999999999999999999999999999999999999999999999877999999999976 4667899999999
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
No 102
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-45 Score=364.22 Aligned_cols=218 Identities=27% Similarity=0.526 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+++++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+++.+||+||+.+...... .....+...++.++++.+++.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 235679999999999998999999987643221 12233445678889999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+...||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 47789999999999999999998876
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
No 103
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=360.99 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.|.. ....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|+++..
T Consensus 5 ~l~~~~l~~~~~~----~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQE----GSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCC----CCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 6999999999821 0112579999999999999999999999999999999999643 568999999998742
Q ss_pred ----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.. ++.++|++|++.+|+.+||+||+.+..... .....+.++++.++++.+||.+..++. +.+|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999865432 123344456788999999998766553 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~-~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AK-RMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HH-hhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999764 44 468999999999998876
Q ss_pred h
Q 008534 380 A 380 (562)
Q Consensus 380 ~ 380 (562)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
No 104
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-44 Score=379.45 Aligned_cols=228 Identities=24% Similarity=0.424 Sum_probs=190.5
Q ss_pred eeEEEEeEEEEEeeccc-----CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
+.|+++||++.|...+. .......+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999842110 00113579999999999999999999999999999999999653 468999999998
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 223 ~~~-------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
+.. .+++.|+||+|++ .++|.+||.|||.+......+ ..++++..+++.++++.++|.+ ..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 588899999999987543211 2345556677889999999953 333 45
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+++|||||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.++ |.|+|+|||++. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999764 899999999976 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
No 105
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-45 Score=372.86 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48999999998310 0112469999999999999999999999999999999999543 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.||||||++ .+|+ .||.|||.|+.... ..+..+..+++.++++.+||. +..++ .+..||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 4676 59999999875432 234455566788999999996 45554 357899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.++||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999976 4668899999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+++++..
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988653
No 106
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-46 Score=355.67 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|..+|+.++| +.+.|+++|||+|++||+++|+|||||||||.+.++.|... +++|.|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58899999988 46789999999999999999999999999999999999654 568999999999874
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..|..|||+||++..|..|||+|||......+.. .....+.+.+++++|+.|++.+.++.. ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 3355699999999999999999999988766532 223345666788999999999988864 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|+..|..|+++-|+..+ ...+|||.+++++|++++.|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCHHHH
Confidence 999999999999999999999999999999999999999999999999999775 6789999999999999999999997
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 227 ~ 227 (243)
T COG1137 227 V 227 (243)
T ss_pred h
Confidence 5
No 107
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-45 Score=363.27 Aligned_cols=215 Identities=24% Similarity=0.433 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCH
Confidence 69999999998 2457999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-CCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+||.||+.++.... ........+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566677776 46544443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4778999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
No 108
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-45 Score=357.66 Aligned_cols=208 Identities=30% Similarity=0.575 Sum_probs=178.8
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++||++.| ..+++|+|+||+|++| +++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2347999999999999 999999999999999999999643 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+||+||+.+..... .....+..+++.++++.++|.+..++. +..|||||||||+|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999899999999865432 122333455678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++.. +.++||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~-~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED-VESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH-HHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 5899999999764 66789999999999998765
No 109
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7e-45 Score=356.97 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. ..+.+|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999882 12579999999999999999999999999999999999543 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++||+|++.+|+.+|++||+.++...+ ....+...+++.++++.+||.+..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24567999999999999899999999875432 123344456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
No 110
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=361.95 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||++.| ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 58899999998 24579999999999999999999999999999999999543 56899999999762
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
...++.|+|++|++.+|+.+||.||+.+.. ... .....+...++.++++.+|+.+..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 124567999999999999999999997532 211 122334456788899999998766654 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++|+|+|++||++. .+.++||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 46678999999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 111
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=362.88 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 58999999998 2356999999999999999999999999999999999965321 358999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.|+||+|++.+++.+||+||+.++...... .....+..+.+.++++.++|.+..... .+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3567899999999888889999999987532210 012334456688899999986422111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|+|++||++. .+.+.||+|++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 466789999999999999999998
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 864
No 112
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-44 Score=364.61 Aligned_cols=217 Identities=31% Similarity=0.499 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +.+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 23579999999999999999999999999999999999643 468999999987631
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008534 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (562)
Q Consensus 226 -------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (562)
.+++.++||+|++.+|+.+||.||+.++.... ...........+.++++.+|+.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM----- 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----
Confidence 24678999999999999899999999864211 1123344456788899999997665543
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999764 899999999976 46688999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 113
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=365.14 Aligned_cols=222 Identities=23% Similarity=0.389 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 379999999988 245699999999999999999999999999999999996531 136899999998863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+ +||+||+.++.... ........+++.++++.+++.+..... -+..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDR-LKSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhh-hcCChhhCCH
Confidence 2 24567999999999998 89999999875432 123334455678899999884221111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999865 799999999975 466889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998763
No 114
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-44 Score=358.49 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeCCh-h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~~~-~ 226 (562)
.+.|+||+|+|+.. +..+++|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 46799999998311 0146899999999999999999999999999999999996531 0458999999998753 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH-HHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+++.++|++|++.+|+.+||+||+.|+.....+..........++.+ .++.+++.+..++ .++.|||||||||+
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 56789999999999999999999998764332221122223334555 7888888765554 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|++||++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999754578899999999999999876
No 115
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.3e-44 Score=361.83 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+..++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccC-CCCh
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (562)
. .+..++||+|++.+++.+|++||+.+....... ......+..+++.++++.++|++ ..++. +. .|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999876432110 01122333457888999999973 44443 34 5999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~-~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL-LNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH-HHhhcCCeEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999998778999999999764 5566 899999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
No 116
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=8.7e-47 Score=418.31 Aligned_cols=323 Identities=22% Similarity=0.264 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhh
Q 008534 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (562)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (562)
++.++..++..+...|.+...+|+|+|+.+....+++.+......+...+.....+...........-..+..++.|+.+
T Consensus 183 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 262 (529)
T TIGR02868 183 VALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPA 262 (529)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677888899999999999999999999999988766555443222111111110000001111112234567777
Q ss_pred hhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeE
Q 008534 92 SRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (562)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nv 155 (562)
+..|..+.|.+.++..+........ ..+.....+.++...... .+.....+.....|+|+||
T Consensus 263 ~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 263 VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV--VPAAGALGLGKPTLELRDL 340 (529)
T ss_pred HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCcccCCCCceEEEEEE
Confidence 7777777777777665432211111 111111111111100000 0000001112236999999
Q ss_pred EEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEE
Q 008534 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIG 232 (562)
Q Consensus 156 s~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~ig 232 (562)
+|+|+ +++++|+|+||+|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++. +.+|++|+
T Consensus 341 sf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 341 SFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhheE
Confidence 99983 124699999999999999999999999999999999984 54 45899999999876 35678999
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|++.+||.+|+.. ..||||||||++||
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiaiA 482 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLALA 482 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHHH
Confidence 99999999975 9999999863 1 122222221 1223333 35778899998754 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
|||+++|+|||||||||+||+.++..|.+.|+++. +++|+|++||++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999864 479999999984
No 117
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=371.28 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|... ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 48899999998210 0012579999999999999999999999999999999999653 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.|+|++|++ .+| .+||.||+.|+.... ....++..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCC
Confidence 2456799999997 456 479999999875432 223445556788999999996 45554 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+...||+|++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 46789999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
No 118
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=363.38 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~ 223 (562)
|+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 4479999999998 23569999999999999999999999999999999999642 12 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+||+|++.+|+ .||+||+.++...+. ........+++.++++.+++.+...... +..+..||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999998 599999998754321 1123334566788899998854222111 23467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
No 119
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-47 Score=398.69 Aligned_cols=344 Identities=24% Similarity=0.297 Sum_probs=241.8
Q ss_pred HHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccccccccc----chhhhhh
Q 008534 18 LVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALSR 93 (562)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~ 93 (562)
--|+-+.+-.|.-+-|||+-|+++.-|-..|...+.+-...+.+. ++.=.+ ..-.|..+-..++. .++..+.
T Consensus 394 ~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks-~~sLnf---LN~~Qn~Ii~lgll~gsll~aY~Vt 469 (790)
T KOG0056|consen 394 WNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKS-LASLNF---LNIVQNGIIGLGLLAGSLLCAYRVT 469 (790)
T ss_pred hhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHhhhhhhhHHhhhhheeeeeee
Confidence 344555566777788999999999888887776554332211110 000000 01122211111221 3444555
Q ss_pred hhhhhhhhhcccccCCCCccccccC----------------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEE
Q 008534 94 ASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (562)
Q Consensus 94 ~~~~~~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~ 157 (562)
......|...-|..|.+.....-.. ..|...+-.+++... |...+.......++|+||+|
T Consensus 470 ~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~----P~a~pl~~~~G~i~fsnvtF 545 (790)
T KOG0056|consen 470 EQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL----PGAPPLKVTQGKIEFSNVTF 545 (790)
T ss_pred eccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC----CCCCCccccCCeEEEEEeEE
Confidence 6677777766665543322111000 001111101111111 11111112234799999999
Q ss_pred EEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEE
Q 008534 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGF 233 (562)
Q Consensus 158 ~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igy 233 (562)
.|. .++++|+||||++.||+.+|||||||+||||++++|- |+++. .+|.|.+||++++ ..+|+.||.
T Consensus 546 ~Y~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 546 AYD-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred ecC-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCc
Confidence 983 4789999999999999999999999999999999999 56654 4899999999986 368999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 234 V~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
||||..||++ |+..||.|+..-...+.+..+.+.+.+++- .+++++.++|.||.+..+ |||||||||+|||+++++
T Consensus 617 VPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 617 VPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKA 692 (790)
T ss_pred ccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcC
Confidence 9999999975 999999998432221222222233333433 367899999999987665 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 314 P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|.|++|||+||+||..+++.|...|.++++ ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 999999999999999999999999999986 8999999999986 35699999999999999999999975
No 120
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=367.26 Aligned_cols=217 Identities=22% Similarity=0.430 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 1 ml~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccC
Confidence 37899999998 24569999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCC-CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++.|+||+|++.+ +...|+.+|+.++.... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 1345679999999752 33468999998864332 123344455678899999997766553 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877899999999975 466889999999999999999998
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 764
No 121
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=369.03 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 599999999982 123569999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+|++|++. +++.+||.|||.++.... .....+..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34567999999973 566689999999875432 233445556788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 54 599999999999999999988
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
No 122
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.5e-46 Score=421.16 Aligned_cols=354 Identities=21% Similarity=0.249 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhh
Q 008534 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (562)
.+..++..++..+...|.+.+.+||++|+.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667778889999999999999999988888887765554432211100000000000000000111223456777
Q ss_pred hhhhhhhhhhhhcccccCCCCccc----cccCCC------CCCCCCccccccccC--CCCCCCCCCCCceeEEEEeEEEE
Q 008534 91 LSRASSASLGLSFSFTGFTMPPDE----IADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
++..+..+.|.++++..+...... +..... .+..++.+..+..+. ........+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 777777777777666543321111 110000 000000000100000 00000001111235999999999
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|+ +.+++|+|+||+|++||.++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-YD-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-CC-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 82 124689999999999999999999999999999999985 43 568999999998753 567889999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
+|++.+|+ .|++|||.++. + ..++++..+. +++.+. .+++..+|.+|.. ...||||||||++||||
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 1223322222 222222 3466678887754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999875 48999999999854 46799999999999999999999864
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-44 Score=363.36 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|.++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 379999999998 2356999999999999999999999999999999999965321 24899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCcccC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (562)
...++.|+||+|++.+|+ +||+||+.++..... .......++++.++++.+++. +..++ .+.
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134677999999998885 899999998754321 112333455678888888873 23343 457
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +.|||++||++. .+.++||+|++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 799999999976 46688999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 124
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-45 Score=358.64 Aligned_cols=220 Identities=26% Similarity=0.473 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++.++|+++| ++-.+++||||++++||+++|+||||||||||+|+|+|.+. |++|+|.++|++++.
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCH
Confidence 58899999988 46789999999999999999999999999999999999653 568999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC--------CC-CccHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
..+..|+--||...+|++|||.||+..+...+. +. .....+..+++.++|+.+||.+.+|+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~ 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----G 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----h
Confidence 235668899999999999999999999865321 11 1124555678899999999999999865 4
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.+. |.||++|.||+. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999874 799999999976 5899999999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999975
No 125
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=361.94 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~- 224 (562)
.|+++||++.| ..+++|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|+++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 68999999998 2356999999999999999999999999999999999965321 24899999999874
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.++|++|++.+|+.+||.||+.++...+.. .........++.++++.+++.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 13466899999999999989999999987543210 012333445678888988885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 699999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98864
No 126
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.2e-44 Score=360.36 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 58899999988 23579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC--C---CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..++.++|++|++.+|+.+||+||+.++...... . ....+....++.++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 011233456788999999998766654 468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999975 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
No 127
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-46 Score=420.25 Aligned_cols=353 Identities=24% Similarity=0.324 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+.++..++...+..+...+.....+|+|+++.+....+++.+..........+....................+..+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999998888888766544332211110000000000011111122334467
Q ss_pred hhhhhhhhhhhhhhcccccCCCCcccccc----------------CCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIAD----------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++.+..+......... .+.....+.++..+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 76666677777776665543321111000 01111111111000000 0000 00111236999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|+. ..++++|+|+||+++|||.++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-~~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-YD-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999831 1236799999999999999999999999999999999995 43 458999999998753 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (562)
+.|+||||++.+|+ .|++|||.++. + ..++ +++.++++..+ +++..||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFA-ASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 88999999999997 49999998853 1 1222 23334444443 345678888754 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+++|++||||||||+||+.++..+++.|+++. +++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999975 35789999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++++
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8754
No 128
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=3.5e-44 Score=375.39 Aligned_cols=227 Identities=25% Similarity=0.430 Sum_probs=190.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~ 225 (562)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|.++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 123579999999999999999999999999999999999653 32 38999999998742
Q ss_pred ----h---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 226 ----~---~~-~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
. +| +.|+||||++ .++|.+|+.+++.+...... .....+..+++.++++.++|++..+. .+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 1 23 4799999998 68899999999987654321 23455556678899999999754322 2356789
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+|||||+.+|+|||+||||+|||+.++..|++.|+++.++ |.|+|+||||+. .+..+||+|++|++|+|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999765 899999999976 46678999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999999875
No 129
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=375.25 Aligned_cols=227 Identities=26% Similarity=0.389 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~~- 225 (562)
.|+++||++.|..+ .....+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +++|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 58999999998321 12246999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h---c-cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ---S---L-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ---~---~-~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
. + ++.|+||||++ .++|.+||.+++........ .....+..+++.++++.+||.+..+ ..+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1 1 24699999998 47889999999876543321 1244556678899999999975221 123467899
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+|||+||||+|||+.++.++++.|+++.+ .|.|+|+|||++.. +.++||+|++|++|+|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~-~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL-VAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 48999999999764 66889999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999998875
No 130
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2e-44 Score=356.80 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=175.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||+++|..+ ....++|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchh
Confidence 7899999998210 01136999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-HHHHHHHcCCC-ccccccccCcccCCCCh
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++ .+++.+||+||+.+........ ........ +.++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3456899999998 5677899999998865432111 11122222 35788899985 34444 3568999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999865 899999999975 46678999999999999876
Q ss_pred c
Q 008534 378 G 378 (562)
Q Consensus 378 G 378 (562)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
No 131
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=363.66 Aligned_cols=213 Identities=31% Similarity=0.474 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~ 69 (255)
T PRK11248 1 MLQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PG 69 (255)
T ss_pred CEEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CC
Confidence 37899999998 23579999999999999999999999999999999999543 568999999998753 33
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..++|++|++.+++.+||+||+.++...+ .....+..+++.++++.+||.+..++. +..|||||||||+|||
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~lar 141 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIAR 141 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHH
Confidence 56999999999999899999998865332 123344456788999999997665543 5689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc--CCeEEEecChH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (562)
||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+..+||+|++|+ +|++++.++.+
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999854 5899999999976 4678899999998 59999988653
No 132
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.3e-44 Score=355.83 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=178.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. .++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChh
Confidence 78999999882 1357999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++|++|++.+++.+||+||+.+..... .....+...++.++++.+++.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHH
Confidence 14578999999999888899999999875432 123344445678899999998765553 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +...||+|++|++|+++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL-ISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999999999999997778999999999764 667899999999999853
No 133
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=368.93 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=183.4
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
.++||++.| +.+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 456777766 35679999999999999999999999999999999999653 568999999998742 1
Q ss_pred ----ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 227 ----~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.++.++|++|++.+|+.+||+||+.++.... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998899999999875432 122334456788899999998766664 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 467889999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 764
No 134
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.5e-44 Score=354.39 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=176.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||+++| +.+++|+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4689999998 23579999999999999999999999999999999999543 568999999998731
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+++.+|++||+.++..... .....+..+++.++++.+|+.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 122334456788899999997765654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. .+.++||+|++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999974
No 135
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=367.37 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCcccc
Confidence 378999999982 13469999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.|+||+|++. .+..+||.||+.++.... ........+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 34577999999975 355689999999875332 233445556788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998779999999999764 5 5699999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
No 136
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=363.95 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48899999998 24579999999999999999999999999999999999643 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.++|++|++.+++.+||+||+.++.... .........++.++++.++|.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233345678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+ .+|++|||||||+|||+.++..+.+.|++++ +.|+|||++||++. .+..+||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999997 56899999999975 46679999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
No 137
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=383.61 Aligned_cols=203 Identities=26% Similarity=0.454 Sum_probs=177.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h----ccCcEEEEccCCCCCC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLFP 242 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~----~~~~igyV~Q~~~l~~ 242 (562)
.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. . .++.++||+|++.+|+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 48999999999999999999999999999999999543 568999999998742 1 1357999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
++||+||+.|+...+ .....+..+++.++++.+||.+..++. +++|||||||||+|||||+.+|+|||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999976543 223445556788999999998766654 578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999975 4899999999975 467899999999999999999998874
No 138
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=361.87 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC----------CCc--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
. .+..++|++|++.+|+.+||+||+.++...... ... ...+...++.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234589999999999999999999986431100 000 1112335677889999997665554
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 5689999999999999999999999999999999999999999999999775 899999999975 4678899999999
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
No 139
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.4e-44 Score=355.11 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=175.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|.. ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 789999999821 1112579999999999999999999999999999999999643 568999999998742
Q ss_pred h---cc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ~---~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122333455678899999998666553 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~-~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL-A-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 8999999999763 4 558999999999985
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=365.11 Aligned_cols=217 Identities=30% Similarity=0.544 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (275)
T PRK13639 1 ILETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKK 71 (275)
T ss_pred CEEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccc
Confidence 378999999982 13469999999999999999999999999999999999653 568999999998731
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.|+|++|++ .+++ +||.||+.++.... .....+..+++.++++.++|.+..++. +.+|||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq 142 (275)
T PRK13639 72 SLLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQ 142 (275)
T ss_pred hHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHH
Confidence 2467899999997 3554 79999998864321 223444556788899999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 221 (275)
T PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTP 221 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999877999999999975 46678999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 222 ~~~~ 225 (275)
T PRK13639 222 KEVF 225 (275)
T ss_pred HHHh
Confidence 9875
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.1e-44 Score=353.93 Aligned_cols=202 Identities=29% Similarity=0.502 Sum_probs=171.5
Q ss_pred EEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc
Q 008534 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~~ 228 (562)
+++||+++|. + +.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~~--------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSYK--------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEeC--------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 3688999882 2 579999999999999999999999999999999999543 568999999998753 345
Q ss_pred CcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+.++|++|++. .+..+||+||+.++.... . ....++.++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1124678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +..+||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999997779999999999764 66789999999999975
No 142
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-44 Score=365.51 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|... ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 48899999998210 0012469999999999999999999999999999999999543 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..+++.++++.++|.+ ..+. .+.+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 2456799999997 4665 69999999865332 1233444556788999999963 3444 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
No 143
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-44 Score=373.55 Aligned_cols=227 Identities=26% Similarity=0.431 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeeccc--CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~--~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
.|+++||++.|..+.. .......+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999842110 00113579999999999999999999999999999999999653 468999999998742
Q ss_pred ------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCC
Q 008534 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (562)
.+++.|+||+|++ .++|.+||.+++.+...... ...+.+..+++.++++.+||.+ ..++ ++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCccC
Confidence 2467899999998 58899999999987654321 2345556678899999999963 3443 56899
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+|||+||||++||+.++.+|++.|+++.++ |.|||+|||++. .+.++||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999976 466789999999999999
Q ss_pred EecChHHHHH
Q 008534 376 YFGKASEAMA 385 (562)
Q Consensus 376 ~~G~~~el~~ 385 (562)
+.|+.+++..
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988753
No 144
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-44 Score=359.46 Aligned_cols=222 Identities=22% Similarity=0.401 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l--~~~-~~~G~I~i~G~~~~~ 225 (562)
+|+++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|.++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 2456999999999999999999999999999999999852 222 248999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.|+||+|++.+|+ .|++||+.++...+. .......++.+.++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34567999999999987 699999998754321 1112334456788899999864322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|||++||++.. +.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~-~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ-AARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHH-HHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 47999999999764 678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 98874
No 145
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-45 Score=392.48 Aligned_cols=216 Identities=32% Similarity=0.536 Sum_probs=184.1
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..++.+|++|.|+ +++++++|+||++++|+.+||+|+||||||||+++|+|... +++|+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23489999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC------CccccccccCcccCCC
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (562)
..+|++++||+|+|.+|+. |++|||.++.. ..++++ +.++++..+| ++..|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3689999999999999985 99999998742 123333 3334443333 56778888865 5679
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+|||++||||+.+++++||||||++||.++++.|++.|.++++ ++|+|++||++.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999986 5999999999864 57799999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
No 146
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-44 Score=365.56 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+++|. ..+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 589999999982 13469999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++. ++ ..||.||+.++.... ....+...+++.++++.++|.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 34677999999974 45 579999998865422 234444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 467899999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 147
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=363.73 Aligned_cols=208 Identities=25% Similarity=0.422 Sum_probs=180.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .+
T Consensus 11 ~~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EA 79 (257)
T ss_pred CcEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hh
Confidence 369999999998 24579999999999999999999999999999999999643 56899999998764 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+||+||+.++.. . ....++.++++.++|.+..+.. +..|||||||||+||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHH
Confidence 6789999999999998999999987521 0 1234677899999998765553 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+..+||+|++|++|++++.|+.+
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999865 4899999999976 466889999999999999988653
No 148
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.3e-44 Score=362.35 Aligned_cols=218 Identities=24% Similarity=0.433 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. ...+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++||+|++. +|+..|+.+|+.+..... ........+++.++++.+++.+..++. +..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 35678999999984 677789999998875332 123344455678899999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999864 54 499999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
No 149
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=365.38 Aligned_cols=223 Identities=23% Similarity=0.411 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++|.... +...+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccc
Confidence 3699999999983110 0013579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.+|||+|++. +++ .||.||+.|+.... .....+..+++.++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 149 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQ 149 (280)
T ss_pred cHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHH
Confidence 34678999999974 454 69999999875432 233445566788999999998776664 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. +. .||++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 150 KQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGT 227 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 9999999999875 44 499999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 228 ~~~~~~ 233 (280)
T PRK13633 228 PKEIFK 233 (280)
T ss_pred HHHHhc
Confidence 998753
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=361.41 Aligned_cols=224 Identities=25% Similarity=0.416 Sum_probs=185.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~ 223 (562)
...|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|.+.. | +.+|+|.++|.++
T Consensus 11 ~~~l~~~~l~~~~~--------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYYG--------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEeC--------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 45799999999982 34699999999999999999999999999999999996531 2 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+|++|++.+|+ +||+||+.++..... ..+.....+++.++++.+++.+...... +..+.+||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999987 799999998753221 1234444567888999998853211111 23457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+..+||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988764
No 151
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.3e-44 Score=362.88 Aligned_cols=221 Identities=27% Similarity=0.480 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~ 225 (562)
+.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... |. .+|+|.++|.++..
T Consensus 3 ~~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 3 TIIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQR 73 (262)
T ss_pred cEEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEeccc
Confidence 369999999998 24579999999999999999999999999999999999653 32 36999999987632
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 226 ---------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
.+++.++|++|++.+|+.+||+||+.++.....+. .......+.++.++++.+||.+..+..
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---- 149 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR---- 149 (262)
T ss_pred ccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC----
Confidence 23567999999999999899999998764211000 011223455788999999998666654
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +...||+|++|+
T Consensus 150 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~-~~~~~d~i~~l~ 227 (262)
T PRK09984 150 -VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALR 227 (262)
T ss_pred -ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999754 8999999999753 678899999999
Q ss_pred CCeEEEecChHHH
Q 008534 371 KGSLLYFGKASEA 383 (562)
Q Consensus 371 ~G~iv~~G~~~el 383 (562)
+|++++.|+++++
T Consensus 228 ~g~i~~~g~~~~~ 240 (262)
T PRK09984 228 QGHVFYDGSSQQF 240 (262)
T ss_pred CCEEEEeCCHHHh
Confidence 9999999998764
No 152
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-44 Score=373.79 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~~- 225 (562)
.|+++||+++|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998421 12457999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 226 ---~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
. .++.|+||||++. ++|.+||.+++.+......... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 011234567889999999975321 123456
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+|||++. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999874 899999999975 466889999999999
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998874
No 153
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=358.87 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~~~-- 225 (562)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+ .||+||+.++...+.. ........+++.++++.++|.+...... +..+..||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34677999999999997 6999999987533210 0012334456788999999954221111 23457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
No 154
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.2e-44 Score=352.98 Aligned_cols=206 Identities=30% Similarity=0.539 Sum_probs=172.5
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
+++||++.|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3688999872 112579999999999999999999999999999999999643 568999999998742 3
Q ss_pred ccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+++.|+|++|++. .++.+||+||+.++.... .........++.++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4677999999974 355689999998865332 122334455678899999997665553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 4667899999999985
No 155
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=362.17 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 58999999998 24579999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+++.+||.||+.++...... ..........++.++++.++|.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999986311000 0111123345678889999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999777899999999976 47789999999999999999998876
Q ss_pred H
Q 008534 384 M 384 (562)
Q Consensus 384 ~ 384 (562)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 3
No 156
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-44 Score=357.48 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=178.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4689999998 24579999999999999999999999999999999999543 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+.+|+.||+.++..... .. ..+.+.++++.++ +.+..++ .+..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999998999999998754321 11 1223456666665 4444444 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4667899999999999999999887
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 157
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.3e-44 Score=363.02 Aligned_cols=226 Identities=23% Similarity=0.424 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecc-cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~-~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||++.|...+ .....++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 488999999983100 000114579999999999999999999999999999999999543 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.|+||+|++ .+++.+||+||+.+...... .........++.++++.+||. ...+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 46778999999987643211 122334456788999999995 44454 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+..+||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998874
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-44 Score=364.08 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=186.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++|+++.|. ..++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999872 124579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++. .|+.+||+||+.++.... .....+...++.++++.++|.+..++. +..|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 35678999999974 566789999999865322 123444456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|++|||||+.+|+||||||||+|||+.++..+++.|++++++ ++|||++||++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 5999999999864 4 479999999999999999988
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
No 159
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-45 Score=353.92 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=204.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|++++|+++| +++.+++|+||.++||++.+++|||||||||++++|.|.+. +++|.|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 58999999988 47889999999999999999999999999999999999654 458999999999998888
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
.+|||+|.+.-||+.+||.|.|.|.+.++ ++++++....+..+|+++++....... +.+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 577888889999999999998765544 5799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+.|
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975 589999999999999999999999988755
No 160
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.5e-44 Score=354.91 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.0
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCc
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ 230 (562)
+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .+++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 367899988 23569999999999999999999999999999999999643 56899999998764 45678
Q ss_pred EEEEccCCCCC--CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 231 igyV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++||+|++.++ ..+||+||+.++...... .........+++.++++.+++.+..++. +..|||||||||+||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999986432110 0011223345688899999997665554 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999976 467889999999876 66654
No 161
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-44 Score=349.72 Aligned_cols=216 Identities=26% Similarity=0.462 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+..| +...+|++|||++++||+++|+|||||||||||++|+|... +.+|+|.++|++++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 68999999988 35689999999999999999999999999999999999653 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..+..|+||||...+||.|||+|||..++..+.. +.......+++.+.|. |.+..++. ...|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~-----aG~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQR-----AGTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCc-----ccCCChHHHH
Confidence 3567899999999999999999999998654321 1111222566666663 45555544 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++... ..+++||.+||.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999866 7899999998654 67899999999999999999999
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 985
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=364.30 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~i~G~~~~~- 225 (562)
+|+++|+++.|. ...+++|+||||+|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|.++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++||||+|++. +++.+||+|||.|..... ..+.++..+++.++++.++|.+..++. ++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHH
Confidence 34578999999984 566789999999864322 234555566788999999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999764 8999999999864 4 57999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88753
No 163
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=357.92 Aligned_cols=223 Identities=22% Similarity=0.395 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++|++++|. ++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. | +++|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~--------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHFG--------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEeC--------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 589999999982 35699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+.+||+||+.++..... .....+.+.++.++++.+++........ +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 346789999999999998999999987643221 1123334456788899999854221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
No 164
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-44 Score=363.09 Aligned_cols=221 Identities=25% Similarity=0.427 Sum_probs=185.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 10 ~~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 10 TTFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWS 79 (265)
T ss_pred ceEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCC
Confidence 369999999998 2457999999999999999999999999999999999954 3568999999998642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
.+++.++||+|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +.+|||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 154 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQ 154 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHH
Confidence 34567999999988888899999998753211000 011123345678899999997666654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 155 RAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999976 467899999999999999999987
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 234 ~~~ 236 (265)
T PRK10575 234 ELM 236 (265)
T ss_pred Hhc
Confidence 753
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-44 Score=361.60 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|+++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 79999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+. ||.||+.++...+.. ........+++.++++.++|.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346779999999999985 999999987543210 0123334556788999999964221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999976 4668899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88764
No 166
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=357.02 Aligned_cols=222 Identities=28% Similarity=0.438 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~~--~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 68999999998 24579999999999999999999999999999999999642 232 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ +||+||+.++..... .........++.++++.+++.+..... .+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34667999999999997 799999998753321 111233345677888888875321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98864
No 167
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=358.95 Aligned_cols=222 Identities=24% Similarity=0.410 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||++.| +.+++|+|+||+|++||+++|+||||||||||+++|+|.+.. |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996531 21 58999999998741
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. ||+||+.+...... ...+.+..+++.++++.+++.+..... -+..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-l~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDR-LHTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhh-hhCCcccCCHH
Confidence 346779999999999985 99999998653321 112334455677889988885421111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 789999999976 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
No 168
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=358.58 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~- 224 (562)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235799999999999999999999999999999999996542 1 25899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.++||+|++.+|+.+||+||+.++...+. .......++++.++++.++|.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346779999999999998999999998754321 1123344556788899998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCe
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~ 373 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 689999999975 4678899999996 799
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
No 169
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.5e-44 Score=352.07 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4689999988 24579999999999999999999999999999999999653 5689999999987543335
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+|++||+.+...... .. +.++.++++.+||.+..+.. +..||||||||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999987654321 11 23567889999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++.+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877899999999976 4678899999999999999998753
No 170
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.4e-44 Score=359.93 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 24579999999999999999999999999999999999543 568999999998743
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..|||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3356799999998877789999999885311000 0011123345678899999997665654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 467899999999999999999988763
No 171
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-44 Score=362.22 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCH
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+||+|++.+++.+||+||+.++.....+. .........++.++++.++|.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHH
Confidence 34567999999999998899999998753111000 00112334567889999999765555 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||+|++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999976 4778999999999999999999887
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
No 172
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=359.76 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=187.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~ 223 (562)
...|+++||+++| .++++|+||||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 4479999999998 246799999999999999999999999999999999996532 14689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. ..++.|+||+|++.+|+ .||+||+.++.... . ...+...+.++.++++.++|.+..+... +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24667999999999987 69999999875321 1 1123344566788899998854322222 34567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999976 46789999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998864
No 173
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1e-43 Score=355.06 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++|++++| ..+++|+|+||++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 24579999999999999999999999999999999999643 568999999998753 33
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|+.||+.+....+ ........+.+.++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122333446678899999997666654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998775 899999999975 467889999999999999999988874
No 174
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-45 Score=363.80 Aligned_cols=203 Identities=30% Similarity=0.506 Sum_probs=185.8
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-------hc-cCcEEEEccCCCCCC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------SL-KSKIGFVTQDDVLFP 242 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-------~~-~~~igyV~Q~~~l~~ 242 (562)
.-++|+||+|+.||++.|||-||||||||+++|.+ +.+| +.|+|+++|.++.+ .+ |+++++|||...|+|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999995 5554 58999999998742 23 467999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
+.||.||..|+...+ +++++++++++.++|+.+||..+.+. ++++|||||||||.|||||+.+|+|||+|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998765 57899999999999999999988775 5689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|+|||--+.++.+.|.+|.++ ++|||+||||+++ .+++.|||.+|++|+||..|+|+|++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE-AlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE-ALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HHhccceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999654 8999999999864 78999999999999999999999987
No 175
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.2e-43 Score=351.87 Aligned_cols=214 Identities=31% Similarity=0.464 Sum_probs=179.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 226 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~- 226 (562)
.+|+++||+++|... ....++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCC
Confidence 369999999998210 011359999999999999999999999999999999999543 5689999999987421
Q ss_pred ------c-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 227 ------L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 227 ------~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
. ++.++|++|++.+++.+||.||+.+....+ ........+++.++++.++|.+..+.. +..||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 2 257999999999999899999998865332 123344556788999999998766554 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++.. + ..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL-A-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999764 8999999999763 4 56999999999999753
No 176
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-44 Score=349.88 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|++++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 46899999882 222 39999999999999999999999999999999643 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+||+||+.++..... .. ....++++.++++.++|.+..++. +.+||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999998999999987643211 11 123455688899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999975 466789999999999998764
No 177
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=355.96 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 58999999988 24569999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+|+ .||+||+.++...+ . ....++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34677999999999987 69999998754321 1 1134577889999996 34443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999976 4667899999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-43 Score=352.51 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=186.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|++++| ..+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 24579999999999999999999999999999999999543 458999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+|+.+|++||+.++...+. .......+++.++++.+|+.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5679999999999988999999998754331 22334455678899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999764 899999999975 467889999999999999999987764
No 179
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=361.01 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++|.. ...+.+|+||||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 6899999999821 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~-l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.|+||+|++. +++..||.|||.++.... ........+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566689999998865322 123444456788899999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999865 4 4699999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
No 180
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-43 Score=354.94 Aligned_cols=222 Identities=24% Similarity=0.427 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYG--------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEEC--------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 589999999982 35799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ +|++||+.++..... ........+++.++++.+++.+...... +..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34677999999999997 899999998754321 1123334556778888888753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 799999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
No 181
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=363.95 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++||+++|..+ ......+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKK---TPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCC---CccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 68999999998210 0001359999999999999999999999999999999999653 56899999998863
Q ss_pred -----hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..+++.|+||+|++. +++ .||+||+.|+.... ........+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134667999999973 554 69999999875322 123344445678889999995 44444 35689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||++. .+.++||+|++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999976 467899999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
No 182
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=374.60 Aligned_cols=207 Identities=28% Similarity=0.480 Sum_probs=180.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|++ ||+++|. ++ .+ |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~~--------~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQLG--------DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEeC--------CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 8999881 22 23 8999999999999999999999999999999643 568999999988642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++||+|++.+|+++||+||+.|+.. ....+++.++++.+||.+..++. +.+||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 246789999999999999999999998642 11235678899999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57789999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9875
No 183
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=355.14 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
+.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 368999999998 245799999999999999999999999999999999996431 1 25899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. ..++.++|++|++.+|+ +|++||+.|+..... .........++.++++.+++.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 24667999999999997 899999998754321 112334445677889998874321111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999876 689999999975 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998864
No 184
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=368.38 Aligned_cols=224 Identities=21% Similarity=0.366 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++|++++|. ...+++|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4799999999983 1245799999999999999999999999999999999986431 135899999999985
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
..+++.++||||++.+|+ .|++|||.|+.... ... ++..++.+.++++.++|.+..++.++ ..+..||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 79999999875321 122 22334456778888888654444443 4567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++.. +.+.||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~-i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ-AQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 7999999999764 6678999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
No 185
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-45 Score=386.07 Aligned_cols=215 Identities=31% Similarity=0.545 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+|+|+ +...++|+|+||++++||.+||+|+||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999993 3456799999999999999999999999999999999984 44 458999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (562)
.+++.|++++|...+|.+ |+++||.++.. . .+++ .+.++++.+|| ++.+||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~----~-AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLANP----D-ASDE----ELWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcCC----C-CCHH----HHHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 367889999999999975 99999998742 1 2333 34455555554 45677778754 56799
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||+|++|.+++||||||.|||+.++.++++.|.+-++ |+|+|++||++.. .+.||+|+||++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998765 9999999999875 578999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
No 186
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-45 Score=445.31 Aligned_cols=347 Identities=20% Similarity=0.248 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..+..++..++..+.++|++++.+||++|+++..+.++|.+.+......+.+.....+.+.........-..+..+++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987665554433322221111111111111111233456777
Q ss_pred hhhhhhh--------hhhhhhcccccCC----------------CCccccccCCCCCCCCCccccccccCCCCCCCCCCC
Q 008534 90 ALSRASS--------ASLGLSFSFTGFT----------------MPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (562)
Q Consensus 90 ~~~~~~~--------~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (562)
.++..+. .+.|.++++.... +.....+..+.+...+..+.++... .....+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~----~~~~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND----DGKKLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCccCCC
Confidence 6665431 1222222111100 0011111111122111111111100 0001111
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE-CCEeCC
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i-~G~~~~ 224 (562)
. ..|+|+||+|+|+ ...++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~-----~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYD-----TRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcC-----CCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchh
Confidence 1 2699999999983 11235799999999999999999999999999999999984 54 45899999 567764
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC----------CC-----------------------------C
Q 008534 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~----------~~-----------------------------~ 261 (562)
..+|++||||+|++.+|+ .||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 246888999999999997 599999999742100 00 0
Q ss_pred cc---------HHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 262 LT---------KQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 262 ~~---------~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
.. ....++.+.++++.+ .|++.+||.+|.. +..|||||||||+|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 00 001123455555544 4567788888754 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
||+.++..|.+.|+++.+ .|+|+|+|+|+++. .+.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4789999999986
No 187
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-43 Score=376.06 Aligned_cols=205 Identities=24% Similarity=0.413 Sum_probs=179.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE----eCCh----h---cc-CcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---LK-SKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~----~~~~----~---~~-~~igyV~Q 236 (562)
...+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|+++|. ++.. . .| ++|+||+|
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 4579999999999999999999999999999999999543 56899999996 3321 1 22 57999999
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
++.+||++||+||+.|+.... ...+.+.+.++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+|
T Consensus 114 ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 114 KFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999986442 234556667889999999998776654 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||||+|||+.++.++.+.|.++.++ ++|||++||+++ ++.++||+|++|++|++++.|++++++
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999765 899999999976 477899999999999999999999875
No 188
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=351.91 Aligned_cols=215 Identities=26% Similarity=0.453 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
+|+++||+++|. .+. .||||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 ~l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 68 (232)
T PRK10771 1 MLKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPP 68 (232)
T ss_pred CeEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCCh
Confidence 378999999982 222 39999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.++|++|++.+|+.+|+.||+.++..... .. ......++.++++.+||.+..++. +..||||||||++|
T Consensus 69 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 140 (232)
T PRK10771 69 SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVAL 140 (232)
T ss_pred hhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHH
Confidence 34679999999999998999999987532111 11 123455688899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999998764 899999999975 467889999999999999999988764
No 189
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-43 Score=351.39 Aligned_cols=215 Identities=30% Similarity=0.536 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++|+++.|. . ++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~~--------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDWK--------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEeC--------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 46899999881 2 38999999999999999999999999999999999543 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|+.||+.++.... .....+..+.+.++++.++|.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999998899999999875332 123344555678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467789999999999999999988764
No 190
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.6e-43 Score=373.89 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.0
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-------- 225 (562)
||+++| +++. + |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 1233 4 9999999999999999999999999999999543 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.++||+|++.+|+++||+||+.|+.... ...+..+++.++++.++|.+..++. +.+|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24567999999999999999999999875321 1233455688999999998766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999765 899999999976 477889999999999999999998875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
No 191
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.5e-45 Score=408.41 Aligned_cols=332 Identities=23% Similarity=0.258 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchh
Q 008534 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (562)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (562)
..++.+++.++..+...|.+...+++|+|+.+..+.++|.+..........+...............+.-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788889999999999999999999888886554443221110000000000000000000111112333
Q ss_pred hhhhhhhhhhhhhcccccCCCCc----ccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEE
Q 008534 90 ALSRASSASLGLSFSFTGFTMPP----DEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (562)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (562)
.....+..+.|.++.+..+.... ..+ +..+.....+.+ +...+.....+.....++++
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~------~~~~~~~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAP------RPLAGKAPVTAAPAPSLEFS 324 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccCCCcCCCCCCCCeEEEE
Confidence 33335566666666554432111 110 000111111100 00000000001112369999
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccC
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKS 229 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~ 229 (562)
||+|+|+ ..++++|+|+|++|++|+.++|+||||||||||+++|+|. ++ +.+|+|.+||.++. +.+|+
T Consensus 325 ~v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHh
Confidence 9999983 2235799999999999999999999999999999999984 44 45899999999875 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+|+||+|++.+|+ .|++|||.++.. ..+++ ++.++++..+ +++.+||.+|+. ...|||||||
T Consensus 397 ~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~q 465 (529)
T TIGR02857 397 QIAWVPQHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQ 465 (529)
T ss_pred heEEEcCCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHH
Confidence 9999999999997 599999998631 12222 2333333333 466789988764 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
|++|||||+++|++||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999999999875 58999999999854 5789999986
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=354.88 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|+++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999988 245799999999999999999999999999999999996431 2 358999999988642
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+. ||+||+.+....+. ...........+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999999985 99999998643321 11122334456778899999865322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
No 193
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=353.34 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+...+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 24579999999999999999999999999999999999653212 37999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+.+|+.||+.++..... ...++...+.+.+.++.+++.+..... .+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 345679999999999998999999987653221 112233345566677777653211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 799999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 194
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=353.50 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.| .++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 1 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+ +||+||+.++..... .......++.+.++++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34677999999999997 899999998753321 112333445677888888885422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||+|++|++|++++.|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999976 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98874
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-43 Score=358.81 Aligned_cols=221 Identities=23% Similarity=0.392 Sum_probs=182.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|.++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 479999999998 245799999999999999999999999999999999996431 146899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+++.++||+|++.+|+ .||+||+.++...+ .... ..++++.++++.+++....... -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 234667999999999998 59999999876432 1122 2344567788888774321111 1334578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-------
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~------- 371 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999864 789999999975 47789999999996
Q ss_pred ----CeEEEecChHHHH
Q 008534 372 ----GSLLYFGKASEAM 384 (562)
Q Consensus 372 ----G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 236 ~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 236 GGKVGYLVEFNETKKIF 252 (269)
T ss_pred ccccceEEEeCCHHHHH
Confidence 6799999998875
No 196
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.5e-43 Score=358.52 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccc-CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~-~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||+++|..+.- .....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 6999999999831000 00013579999999999999999999999999999999999643 568999999998752
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++||+|++. +++.+||.+++.+...... ........+++.++++.++|. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344456788899999994 44444 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999764 899999999975 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
No 197
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.9e-45 Score=445.89 Aligned_cols=217 Identities=23% Similarity=0.356 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...++||+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.++.
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 4699999999992 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
+.+|++|+||||||.+|+. ||+|||.++. ..++++.. ..+++.++ .+++.+||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIR--RNSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHH--hCccccCccccCC-CCCCCH
Confidence 3678999999999999975 9999998642 12222211 12233333 3467789999864 457999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+++|+|||||||||+||+.++..|.+.|++.. +++|+|+|+|++++ ...||+|+||++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999974
No 198
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=2.3e-43 Score=346.76 Aligned_cols=209 Identities=26% Similarity=0.477 Sum_probs=177.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
++++||++.|. .+++|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 46899999871 14689999999999999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++||+|++.+|+.+|+.||+.+...... . .....+.++.++++.+||.+..++. ++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHH
Confidence 6779999999999998999999987643211 1 1122345678899999997666554 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 4667899999999999999874
No 199
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=386.48 Aligned_cols=360 Identities=26% Similarity=0.333 Sum_probs=269.4
Q ss_pred HHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhhhhh
Q 008534 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (562)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (562)
++.....+..++-+.-+.++|+|-+-.+...++..+.-...++..+.-.-..|.+.-.||.+-+.+|.--+..|+-++--
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 45555555666666677788988888888888777655554444333223334444447777788888777899999999
Q ss_pred hhhhhhhhcccccC---CCCccccccC--CC-----CCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEeeccc
Q 008534 95 SSASLGLSFSFTGF---TMPPDEIADS--KP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164 (562)
Q Consensus 95 ~~~~~g~~~~~~~~---~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~~~~~ 164 (562)
+..+.|+++.=+-+ .+.+.+..-. +. .++.++.+-+...+... ..+..|.....|.++++++.
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~-~~m~LP~P~g~L~Ve~l~~~------ 343 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA-ERMPLPAPQGALSVERLTAA------ 343 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-CCCCCCCCCceeeEeeeeec------
Confidence 98888887654332 1222221100 00 12222233333322221 22344444568999999983
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCC
Q 008534 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVL 240 (562)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l 240 (562)
+++.++++|+|+||.+.+||.++|+||||||||||.|+|.|.. ++.+|.|.+||-++.. .+-++|||+||+-.|
T Consensus 344 PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 344 PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 4667789999999999999999999999999999999999954 3568999999998863 456889999999999
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
|+. ||.|||.-....-.++.+-+..+.+.++|++- .|++.+||.+|+.. ..||||||||+++||||..+|.+++||
T Consensus 422 F~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLD 497 (580)
T COG4618 422 FDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLD 497 (580)
T ss_pred cCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEec
Confidence 986 99999973321111122333445556788874 56999999999754 679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
||-|+||...+..+.+.|.+++++|.|+|+|+|+|+ +...+|+|++|++|++-.+|+.+|++.....
T Consensus 498 EPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 498 EPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhcC
Confidence 999999999999999999999999999999999987 5788999999999999999999999987643
No 200
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=390.87 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. | +.+|+|.++|.++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 69999999998 24579999999999999999999999999999999999653 3 368999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.+|||+|++.+++.+||+||+.++...+...........+++.++++.+++.+..++. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13467999999999999999999999875322101122334456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999998765
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
No 201
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=358.92 Aligned_cols=226 Identities=26% Similarity=0.452 Sum_probs=192.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC--
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~-- 224 (562)
|+++|++..|... .+...+++||||+|++||++||||.|||||||+.+.|+|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999988432 23467999999999999999999999999999999999977533 26799999999763
Q ss_pred -h----hc-cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCc-cHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 -~----~~-~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+ .+ .+.|+||||+| .|.|-+||.+.+.-...... .. .+++..+++.++|+.+||++... +.+.++++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 22 35799999997 58889999999887665432 12 35566778999999999986422 34678999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||.||.||+.+|+|||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||..|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999986 47899999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
No 202
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=355.04 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~~~ 225 (562)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 24579999999999999999999999999999999999542 12 468999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. |++||+.++..... .......+..+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346679999999999985 99999998643221 111223345567788888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-43 Score=351.52 Aligned_cols=222 Identities=24% Similarity=0.411 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996532 2 358999999998631
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ .||+||+.++..... ....+...+++.++++.+++...... ..+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKD-NLDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHH-HhccChhhCCHH
Confidence 24667999999999986 799999988653221 11122334567788888888421110 012345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999976 4677899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98764
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-43 Score=353.60 Aligned_cols=214 Identities=31% Similarity=0.544 Sum_probs=172.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|. ...+++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 46899999872 123579999999999999999999999999999999999653 568999999998642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHc--CCCccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++.+|+ .||+||+.+.... ...... ...+.++++.+ ++....+ ..+.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34677999999998886 6999999875311 111111 11223444444 3332222 34678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999864 4 569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888653
No 205
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-43 Score=351.24 Aligned_cols=221 Identities=22% Similarity=0.388 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~i~G~~~~ 224 (562)
.|+++||+++| .++.+|+|+||+|++|++++|+||||||||||+++|+|.+. |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||+||+.++...+.. ..++..++.+.++++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999985 999999987543211 11222345567778888875322211 2345678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++.. +.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~-~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ-AARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 58999999999764 67889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988764
No 206
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=351.60 Aligned_cols=221 Identities=24% Similarity=0.378 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~- 224 (562)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 2457999999999999999999999999999999999964311 35899999998873
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 ----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
...++.++|++|++.+|+ .||.||+.++..... ...+...++++.++++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134677999999999997 799999998643211 1122334456777888888754221111 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+...||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 47788999999999999999998
Q ss_pred HHH
Q 008534 381 SEA 383 (562)
Q Consensus 381 ~el 383 (562)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 775
No 207
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-43 Score=355.33 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+..+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965321 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++|++|++.+|+. ||+||+.+...... ...+...++++.++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999985 99999998753321 1122333456778888888864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-43 Score=340.06 Aligned_cols=189 Identities=47% Similarity=0.834 Sum_probs=165.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++|+++.|.. ...++++|+|+||+|++||+++|+||||||||||+++|+|....++.+|+|.++|+++...++
T Consensus 3 ~l~~~~l~~~~~~----~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPV----KGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecC----CCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 5899999999831 111357999999999999999999999999999999999964323568999999998765566
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
+.++|++|++.+++.+||+||+.++... + .|||||||||+|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEEEec
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (562)
||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++...+...||+|++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999986445688999999999 9999876
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=351.27 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|.++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996431 21 47999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.++|++|++.+|+. ||+||+.++...+.. ......+..+.++++.+++.+...+. .+..+..||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDR-LHDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHH-hhcChhhCCHH
Confidence 235679999999999984 999999987543211 12233345677888888875322111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. +.+.||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~-~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ-AARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH-HHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999876 6899999999754 667899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 98764
No 210
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.9e-45 Score=441.51 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...+++|+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|.+||.++.
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999992 123579999999999999999999999999999999997 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||||.+|+. |++|||.++. ..+++ ++.++++.. .+++..||.+|+. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3678999999999999985 9999998642 12232 233333333 3466788988864 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+.++..|.+.|++.. +++|+|+|+|++++ ...||+|++|++|+|++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999865 45699999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
No 211
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-43 Score=358.18 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------CccEEEECCE
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDH 221 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-------~~G~I~i~G~ 221 (562)
+|+++|++++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. |. .+|+|.++|.
T Consensus 1 ml~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~ 71 (272)
T PRK13547 1 MLTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGE 71 (272)
T ss_pred CeEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCE
Confidence 37899999988 24579999999999999999999999999999999999653 22 1799999999
Q ss_pred eCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 222 PYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 222 ~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
++.. .+++.++||+|++.+++.+||+||+.++...... .........+++.++++.++|.+..++ .+..|
T Consensus 72 ~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~L 146 (272)
T PRK13547 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTL 146 (272)
T ss_pred EcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccC
Confidence 8742 3456689999998765568999999886321100 011112334567889999999765554 35689
Q ss_pred ChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEE
Q 008534 297 SGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKL 366 (562)
Q Consensus 297 SGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i 366 (562)
||||||||+|||||+ .+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. .+.++||++
T Consensus 147 SgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i 225 (272)
T PRK13547 147 SGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRI 225 (272)
T ss_pred CHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEE
Confidence 999999999999999 599999999999999999999999999999775 899999999975 466789999
Q ss_pred EEEcCCeEEEecChHHHH
Q 008534 367 ILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 367 ~vL~~G~iv~~G~~~el~ 384 (562)
++|++|++++.|+++++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 226 AMLADGAIVAHGAPADVL 243 (272)
T ss_pred EEEECCeEEEecCHHHHc
Confidence 999999999999988763
No 212
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8.4e-43 Score=352.66 Aligned_cols=218 Identities=26% Similarity=0.404 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-----~ 223 (562)
.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.+ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 69999999998 23579999999999999999999999999999999999543 568999999987 5
Q ss_pred Ch----h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 224 ~~----~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
.. . .++.++||+|++. +++.+|+.||+.+...... .........++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2456999999973 6777899999986532211 0112234556788999999963 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+...||+|++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998765 899999999975 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
No 213
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-43 Score=341.52 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=165.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
.+.|+||+|.|+.+ +.++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57899999999532 24668999999999999999999999999999999999964311 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999899999998753210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6777777666445677899999999999998765
No 214
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.9e-43 Score=386.92 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 558999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.++||+|++.+++.+||+||+.++...... .........+++.++++.+||.+..+.. +.+|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122333455688899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877899999999975 4778999999999999999998765
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 215
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=355.61 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~~~ 224 (562)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 24579999999999999999999999999999999999653 3 35899999999874
Q ss_pred h-----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 ~-----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
. .+++.++||+|++.+|+ +||+||+.++..... ..+..+....+.++++.+++.+..++.. +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 799999998643211 1233344455678889999865332221 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
No 216
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-43 Score=343.39 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=172.5
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----- 225 (562)
.+ ||+++| +++.+ ||||+|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 44 888888 23334 99999999 9999999999999999999999653 568999999988641
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++||+|++.+|+.+|++||+.+..... .....++++.++++.+++.+..++ .+..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHH
Confidence 24567999999999998899999998864321 223345568889999999765554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999765 899999999975 466789999999999998875
No 217
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=353.82 Aligned_cols=223 Identities=22% Similarity=0.414 Sum_probs=181.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|.++.
T Consensus 23 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 23 VVFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred eEEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcc
Confidence 379999999998 235699999999999999999999999999999999996531 2 46899999999873
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++|++|++.+|+ .||+||+.++..... .......+..+.+.++.+++.+...... +..+..|||
T Consensus 95 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSg 170 (271)
T PRK14238 95 DKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSG 170 (271)
T ss_pred cccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCH
Confidence 1 34678999999999987 599999998754321 1112223345667777765432111111 234678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++|++|++++.|
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 799999999976 467889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 988763
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=351.33 Aligned_cols=222 Identities=22% Similarity=0.394 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~----~~G~I~i~G~~~~ 224 (562)
.|+++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~~--------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYYD--------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEeC--------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 699999999982 3469999999999999999999999999999999999653 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+++.++|++|++.+|+ +|++||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCH
Confidence 134667999999999998 899999988653221 012333345678889999885432211 1345678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC-----C
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~-----G 372 (562)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999865 4899999999975 47789999999999 9
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999874
No 219
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=348.35 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~--~~G~I~i~G~~~~~ 225 (562)
+|+++||+++| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 68999999998 235799999999999999999999999999999999996421 21 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.++||+|++.+|+ .||+||+.+....+.. ......++++.+.++.+++....... -+..+.+||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34567999999999998 6999999987543211 11222234566777777764221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+.++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
No 220
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2e-44 Score=439.45 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+|+||+|+|+ ...+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.+
T Consensus 1283 g~I~f~nVsf~Y~------~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR------EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeC------CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 4699999999993 123479999999999999999999999999999999996 5654 58999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
.+|++|+||||||.+|+. ||+|||.... ..++++ +.++++..+ +++.+||.+|.. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 679999999999999985 9999997321 123322 333444333 456789998764 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|+||++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999875 46799999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
No 221
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-43 Score=386.54 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|++++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-CCC---ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.|+||+|++.+++.+||+||+.++..... ... ....+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 124579999999999999999999987542100 001 12334456788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999877999999999975 4678899999999999999999
Q ss_pred hHHH
Q 008534 380 ASEA 383 (562)
Q Consensus 380 ~~el 383 (562)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
No 222
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.3e-42 Score=350.59 Aligned_cols=219 Identities=20% Similarity=0.338 Sum_probs=180.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| ++++|+|+||+|++||+++|+||||||||||+++|+|... | +++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 469999999987 2469999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 225 ~-~-~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
. . .++.|+||+|++. +.+.+|+.+|+.+.+.... ... .++++.++++.++|.+.. + +-+..+..|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~-~-~~~~~~~~LS~Gq 145 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAA-R-VLKLYPFEMSGGM 145 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChh-h-hhhcCCcccCHHH
Confidence 3 2 2357999999974 4556799999876543211 111 235678899999997521 0 1123457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. +...||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~-~~~~~d~v~~l~~G~i~~~~~ 224 (254)
T PRK10418 146 LQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV-VARLADDVAVMSHGRIVEQGD 224 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH-HHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999764 8999999999754 667899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 225 ~~~~~ 229 (254)
T PRK10418 225 VETLF 229 (254)
T ss_pred HHHHh
Confidence 88864
No 223
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=350.82 Aligned_cols=222 Identities=22% Similarity=0.422 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--CccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~--~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 68999999998 2356999999999999999999999999999999999965321 2 48999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
.+++.|+||+|++.+|+ +||+||+.++...+. ...+....+++.++++.+++.+.... ..+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKD-KLNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHH
Confidence 34567999999999997 899999988754321 11233344567788888887432111 113356789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-----CCeE
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~-----~G~i 374 (562)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 689999999976 4778999999998 5999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
No 224
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.76 Aligned_cols=223 Identities=22% Similarity=0.363 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~-~~--~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|... .| +.+|+|.++|.++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 369999999998 23469999999999999999999999999999999999642 13 36899999998864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||.||+.++...... ......++++.++++.+++.+..... .+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999999975 999999987543210 11223345677788888874211111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999976 467789999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998864
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9.8e-43 Score=347.93 Aligned_cols=199 Identities=34% Similarity=0.492 Sum_probs=170.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEEEEc-cCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHL 244 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~igyV~-Q~~~l~~~l 244 (562)
.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. ..+++.++|++ |++.+++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 4679999999999999999999999999999999999543 56899999998753 23466899998 557788889
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
||+||+.+..... .....+..+++.++++.++|.+..++. +..||||||||++|||||+.+|++|||||||+
T Consensus 111 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 111 PVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 9999998865432 122334455677889999998777765 46899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.++..+.+.|++++++ ++|||++||++. .+..+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999764 799999999975 467889999999999998765
No 226
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-42 Score=383.80 Aligned_cols=213 Identities=23% Similarity=0.421 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.+|||+|++.+++.+||+||+.++... ....++++.++++.++|.+..+.. +.+|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 234699999999999999999999885311 123345678899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999878999999999975 4678999999999999999999876
Q ss_pred H
Q 008534 383 A 383 (562)
Q Consensus 383 l 383 (562)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 5
No 227
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.3e-42 Score=346.61 Aligned_cols=221 Identities=25% Similarity=0.344 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| .++.+|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 69999999998 2356999999999999999999999999999999999963223568999999998743
Q ss_pred -hccC-cEEEEccCCCCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccC-CCC
Q 008534 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVS 297 (562)
Q Consensus 226 -~~~~-~igyV~Q~~~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LS 297 (562)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.+++.+ ..++. +. .||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCC
Confidence 1222 488999999999999999999875432100 01112233456778899999963 44443 33 599
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~ 376 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998778999999999754 4455 89999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999843
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=347.41 Aligned_cols=222 Identities=22% Similarity=0.385 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~~ 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.+||.++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 58899999988 245799999999999999999999999999999999995421 2 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.++|++|++.+|+. |+.||+.++..... .......++++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 99999998643221 1123334567788899988854322111 3456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+...||++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999964 889999999976 4778899999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-43 Score=348.20 Aligned_cols=215 Identities=32% Similarity=0.511 Sum_probs=173.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. ...+++|+|+||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 46899999882 112369999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++....+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999987 6999999875321 1111111 1234555554 4443333 34678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999864 8999999999864 54 49999999999999999
Q ss_pred ChHHHHHH
Q 008534 379 KASEAMAY 386 (562)
Q Consensus 379 ~~~el~~~ 386 (562)
+++++...
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=351.03 Aligned_cols=222 Identities=22% Similarity=0.353 Sum_probs=181.2
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~ 223 (562)
+..|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l 89 (274)
T PRK14265 18 HSVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI 89 (274)
T ss_pred CceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence 3479999999998 235799999999999999999999999999999999996532 1 2589999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 224 ~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.. .+++.|+|++|++.+|+. ||.||+.++...+. ... ..++.+.+.++.+++....... -+..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS 163 (274)
T PRK14265 90 YDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDK-LKEKGTALS 163 (274)
T ss_pred ccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHH-hcCCcccCC
Confidence 31 346789999999998874 99999998653221 111 2234456677777764221111 123457899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-------
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------- 370 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|+
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~ 241 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYG 241 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999975 789999999975 4778999999997
Q ss_pred --CCeEEEecChHHHH
Q 008534 371 --KGSLLYFGKASEAM 384 (562)
Q Consensus 371 --~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 242 ~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 242 KRRGKLVEFSPTEQMF 257 (274)
T ss_pred ccCceEEEeCCHHHHH
Confidence 89999999998874
No 231
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.2e-42 Score=339.10 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=168.9
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~--- 225 (562)
++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 46888887 24579999999999999999999999999999999999643 56899999999853 1
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+|+.+|++||+.+..... ........+++.++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23567999999999999899999999865432 123344556788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||++. ....||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877899999999975 34689999875
No 232
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.2e-42 Score=341.44 Aligned_cols=210 Identities=30% Similarity=0.510 Sum_probs=178.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++||++.|.. ..+.+.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~----~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGH----GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccC----CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 789999998821 111367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.++|++|++.+|+.+|+.||+.++..... .....+..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .++|||++||++. +.++||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999976 4899999999975 4579999999999986
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.3e-42 Score=351.75 Aligned_cols=226 Identities=25% Similarity=0.459 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccC-CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~-~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++||++.|...+.. ...++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 58999999998310000 0013679999999999999999999999999999999999543 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -----~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
.+++.++|++|++ .+++..|+.||+.+...... .........++.++++.+|+. ...++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 46677899999976542110 123444556788999999996 34444 356899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||++||++. .+..+||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999764 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998864
No 234
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.6e-42 Score=335.08 Aligned_cols=191 Identities=52% Similarity=0.897 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
.|+++||+++|... .....+++|+|+||+|++||+++|+||||||||||+++|+|.+..++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~--~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSS--PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecC--CCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 58999999998310 0011357999999999999999999999999999999999965112568999999998864 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+|+.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999989999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865567889999999999998765
No 235
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=348.65 Aligned_cols=221 Identities=20% Similarity=0.327 Sum_probs=184.5
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CCccEEEECCEe
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHP 222 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~----~~~G~I~i~G~~ 222 (562)
++.+.++++++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. | +.+|+|+++|.+
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND-LVKGFRFEGHVHFLGQD 76 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc-cccCCCCceEEEECCEe
Confidence 4468999999987 24579999999999999999999999999999999999653 2 258999999998
Q ss_pred CCh------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 YSK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 ~~~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.. .+++.++|++|++.+| .+|++||+.++...+. . ......++.++++.++|.+...... +..++.|
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~L 150 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSL 150 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccC
Confidence 742 3466799999999988 4899999998764321 1 2233456888899999864332222 2346789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------ 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------ 370 (562)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|+
T Consensus 151 S~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~ 228 (261)
T PRK14263 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQG 228 (261)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999964 789999999976 4678999999995
Q ss_pred --CCeEEEecChHHHH
Q 008534 371 --KGSLLYFGKASEAM 384 (562)
Q Consensus 371 --~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 229 ~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 229 TRTGYLVEMGPTAQIF 244 (261)
T ss_pred cCCceEEEeCCHHHHH
Confidence 89999999998864
No 236
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-42 Score=375.18 Aligned_cols=228 Identities=26% Similarity=0.422 Sum_probs=193.9
Q ss_pred eeEEEEeEEEEEeeccc---CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~---~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
+.++++||++.|..++. ...+...+++||||++.+||++||||+||||||||.|+|+|++. +.+|.|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccc
Confidence 46899999999964320 01234579999999999999999999999999999999999543 46899999998731
Q ss_pred ------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
...++++-+||||| .|.|.+||+++|......... ....+.++++.++++..||+.. +.++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567889999997 589999999999987654432 2256667789999999999842 445688999
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||++|||||+.+|++|++|||||+||+..+..|++.|+++.++ |.|.|+||||+. .+..+||||+||++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999765 999999999976 477899999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888774
No 237
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-42 Score=352.65 Aligned_cols=221 Identities=24% Similarity=0.408 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||+++| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+.. .+.+|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 369999999998 235799999999999999999999999999999999996531 146899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
. .+++.++||+|++.+|+. ||+||+.+...... ... ....++.++++.++|.+..... -+..+.+|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQ-LDSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHH-HhCCcccCCH
Confidence 1 346789999999998885 99999998754321 122 3345678899999885321111 1234578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE-EEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||++||++. .+..+||+++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 4677899975 6799999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
No 238
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.3e-42 Score=345.75 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=170.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++... ....+||+|++.+|+.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 5689999999987532 2235899999999998999999998
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
+.....+ ...+.+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 223344456688899999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999764 899999999976 46788999999999999999866543
No 239
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8e-43 Score=348.24 Aligned_cols=218 Identities=31% Similarity=0.509 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++|+++.|. ...++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~-----~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYP-----SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecC-----CCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 46899999872 1123579999999999999999999999999999999999643 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++|++|++.+++ .||+||+.++.... ....... .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 23567999999998887 69999998753211 1111111 122223322 11122222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 68999999999764 4 47999999999999999998
Q ss_pred HHHHHH
Q 008534 381 SEAMAY 386 (562)
Q Consensus 381 ~el~~~ 386 (562)
+++..+
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
No 240
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.2e-44 Score=440.91 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|+ ...+++|+||||+|++||.+||+|+||||||||+++|.| +++| .+|+|++||.++.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 4699999999993 123569999999999999999999999999999999997 5544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||++.+|+. ||+|||.... ..+++ .+.++++..+ +++.+||.+|.. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3688999999999999975 9999996421 22332 3444444444 356789998864 4569
Q ss_pred ChhHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 47999999999864 5779999999999999
Q ss_pred EecChHHHHH
Q 008534 376 YFGKASEAMA 385 (562)
Q Consensus 376 ~~G~~~el~~ 385 (562)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
No 241
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=349.72 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~- 224 (562)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 235799999999999999999999999999999999995431 2 35899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 225 -----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..+++.|+||+|++.+|+ .||.||+.++.... ... ....+++.++++.+++.+..+.. -+..+.+||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234677999999999888 59999999875332 111 12334566677777774321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc---------
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~--------- 370 (562)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 4788999999998
Q ss_pred CCeEEEecChHHHH
Q 008534 371 KGSLLYFGKASEAM 384 (562)
Q Consensus 371 ~G~iv~~G~~~el~ 384 (562)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
No 242
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.2e-42 Score=346.30 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-----~ 223 (562)
.|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 23569999999999999999999999999999999999543 568999999976 4
Q ss_pred Ch--------hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 008534 224 SK--------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (562)
Q Consensus 224 ~~--------~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (562)
.. ..++.|+|++|++. +++.+|+.+|+.+...... ..........+.++++.+++.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIG--ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 12356999999974 4556799999976432111 0011233467788999999963 4444 3
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++. .+...||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998754 899999999975 46678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 243
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=372.04 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=193.0
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-- 224 (562)
+..+.|.||+|.|. +.+++|+|+||++++|+.+|++||||+||||++++|- |++++. +|.|.+||+++.
T Consensus 260 ~g~v~F~~V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~v 330 (497)
T COG5265 260 LGAVAFINVSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDV 330 (497)
T ss_pred cceEEEEEEEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHHh
Confidence 44699999999983 4678999999999999999999999999999999999 678765 899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..+|+-||.||||..||.+ |+..|+.|+........+....+.+.++++++. +++++++.||.++.+ |||||||
T Consensus 331 tq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerglk-lSggekq 406 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLK-LSGGEKQ 406 (497)
T ss_pred HHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchheee-ccCchHH
Confidence 3578999999999999975 999999998432211112223334445566664 599999999987665 9999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||+++++|+||+|||.||+||..++++|...|+++. .|+|.+++.|++++ + -.+|.|+||++|+|++.|+|++
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ 483 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEE 483 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHH
Confidence 9999999999999999999999999999999999999987 58999999999986 3 4699999999999999999999
Q ss_pred HHHH
Q 008534 383 AMAY 386 (562)
Q Consensus 383 l~~~ 386 (562)
++..
T Consensus 484 ll~~ 487 (497)
T COG5265 484 LLAA 487 (497)
T ss_pred HHHc
Confidence 9863
No 244
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.6e-42 Score=354.13 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|. .....+|+||||+|++||+++|+||||||||||+++|+|.+. .+|+|++||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 488999999983 124569999999999999999999999999999999998652 47999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc-------cccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-------~vg~~~~~~LS 297 (562)
.+++.|+||||++.+|+. ||++|+.+.. .... +++.+.++.+||.+..+. .+++ ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467789999999999985 9999996421 1112 245667777787654443 3332 345699
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++.. + ..||+|++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~-i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEA-M-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHH-H-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 48999999999853 4 45999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
No 245
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=7.3e-42 Score=343.13 Aligned_cols=227 Identities=27% Similarity=0.344 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 1 MLSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred CeEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH
Confidence 37899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHh-hCC--C-CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCCh
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSG 298 (562)
. .++.++|++|++.+++.+|+.+++.+... ... . .........+.+.++++.+++++ ..++.+ .+.|||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~ 148 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSG 148 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCH
Confidence 1 23569999999999888888777654321 100 0 00112223456778889999963 333322 137999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (562)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||++||++.. +... ||+|++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEECCeEEEe
Confidence 99999999999999999999999999999999999999999998778999999999753 5455 899999999999999
Q ss_pred cChHHHHHHHHh
Q 008534 378 GKASEAMAYFSS 389 (562)
Q Consensus 378 G~~~el~~~f~~ 389 (562)
|+++.+ +.+..
T Consensus 228 g~~~~~-~~~~~ 238 (248)
T PRK09580 228 GDFTLV-KQLEE 238 (248)
T ss_pred CCHHHH-HHHHh
Confidence 998854 44443
No 246
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.4e-42 Score=342.59 Aligned_cols=210 Identities=24% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 69999999988 2457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.++|++|++.+|+ .||+||+.+....+.. . ..+.++.++++.+++. ...++ .+..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 34678999999999997 5999999886433211 1 1234567889999995 34444 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc-CCeEEEecChH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (562)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||++.. + ..||++++|+ ++..+.+|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999764 4 5699999995 56777878764
No 247
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-43 Score=329.63 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58889999888 4678999999999999999999999999999999998 4544 56899999998762
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 225 -------------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
..+|.+.|+|||+.+|+++|||.||+.-+..--+ +.++.+..++++.+|..+|+.+..+.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246779999999999999999999986532111 35677778889999999999887764
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. .-+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999765 4567899999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999874
No 248
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=344.24 Aligned_cols=214 Identities=33% Similarity=0.516 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ..+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 478999999882 13469999999999999999999999999999999999653 568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (562)
.+++.++|++|++.+|+. ||+||+.+.... ... .++.+.++.+++.+.. ++.. +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 346779999999998875 999999875321 111 1222333333332211 2221 23467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999764 4 46999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 98877654
No 249
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.7e-42 Score=371.88 Aligned_cols=228 Identities=27% Similarity=0.447 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~- 225 (562)
.|+++|++..|... +....+++||||+|.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|.++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998432 233579999999999999999999999999999999999765431 47999999987631
Q ss_pred ------h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ------S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ------~-~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
. ..+.|+||||+|. |-|-+||.+-|.-....+.. .+.++..+++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 2367999999974 66778999999876665532 3477788889999999999876554 5689999
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||||||.||+||+.+|++||+||||++||+.++.+|++.|+++.+ .|.++|+||||+. .+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 5999999999976 578899999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
+.|++++++.-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999998753
No 250
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.1e-42 Score=378.66 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh---
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~--- 225 (562)
|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 24579999999999999999999999999999999999653 3 258999999998752
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.|+||+|++.+++.+||+||+.++....... ........+++.++++.++|.+..+. ..+.+|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999864321110 12233445678899999999764421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999878999999999975 4678899999999999999998754
No 251
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=331.66 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+.+|++|+. .++.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.++..
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 47899999987 46789999999999999999999999999999999999664 568999999999853
Q ss_pred -hccCcEEEEccCCCC-CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l-~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
++.++-+.+||+..+ || .||+|.+.++..-... .-...+..+.+..+|...++.+..... ...||||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEqQR 143 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQQR 143 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHHHH
Confidence 345667899999766 66 6999999998643211 112234555677888888887766543 46899999999
Q ss_pred HHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 304 VCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 304 v~IAraLl~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|.+||.|+. ++++||||||||+||...+..+++..++++++|..|++|-||++- ...+||||++|++||++..
T Consensus 144 VqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 144 VQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred HHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEeec
Confidence 999999985 446999999999999999999999999999999999999999875 5689999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|++++++
T Consensus 223 g~p~~vl 229 (259)
T COG4559 223 GSPQDVL 229 (259)
T ss_pred CCHHHhc
Confidence 9999875
No 252
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-42 Score=377.79 Aligned_cols=216 Identities=25% Similarity=0.398 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 69999999998 24569999999999999999999999999999999999543 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.+++.|+||+|++.+++.+||+||+.++............+..+++.++++.++|.+..+.. +.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHH
Confidence 24678999999999999999999999864211101122334456788999999997655543 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999877999999999976 46788999999999999887653
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-42 Score=386.18 Aligned_cols=227 Identities=24% Similarity=0.389 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEEeecc-c-C-CccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKG-M-T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~-~-~-~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.|...+ . . ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 3699999999983110 0 0 0012469999999999999999999999999999999999653 56899999999874
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccC
Q 008534 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (562)
Q Consensus 225 ~-------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (562)
. .+++.|+||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||+ +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58889999999998654321 112334456788999999996 44454 467
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+..+||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999765 899999999976 4678999999999999
Q ss_pred EEEecChHHHH
Q 008534 374 LLYFGKASEAM 384 (562)
Q Consensus 374 iv~~G~~~el~ 384 (562)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999874
No 254
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=352.72 Aligned_cols=225 Identities=24% Similarity=0.423 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~ 224 (562)
..|+++||++.| .++.+|+++||+|++||+++|+||||||||||+++|+|.+.. ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 245799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC---------CCcc-HHHHHHHHHHHHHHcCCCccccccc
Q 008534 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---------NTLT-KQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 225 ~------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
. .+++.|+||+|++.+|+ .||+||+.++...... .... .....+.+.++++.+++.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34568999999999987 5999999987532100 0011 1223456788899888854332222
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEE-E
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i-~ 367 (562)
+..+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++.. +..+||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~-i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ-AARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH-HHHhcCEEEE
Confidence 345678999999999999999999999999999999999999999999999976 5899999999764 67889997 5
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
No 255
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.7e-42 Score=340.22 Aligned_cols=209 Identities=30% Similarity=0.547 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCH
Confidence 478999999872 11356999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc------CcccCCCCh
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (562)
..++.++|++|++.+++ .||.||+.+.... .. ...+.++++.+++.+..+..+. ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 24567999999999887 6999999874211 11 2235567777777665444321 123468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~-~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSL-L-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999876 4899999999763 4 799999999999998764
No 256
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-42 Score=325.75 Aligned_cols=215 Identities=29% Similarity=0.496 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+...+++.+|+. ..+.+|+|||++|.+||.++++||||||||||||+++|... |..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888831 23569999999999999999999999999999999999653 5689999999998632 1
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
..-|.|||++.|+|.++|.||+.|+..++ ++.+.++.+++.+++..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 23589999999999999999999999876 57788999999999999999876654 46799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKAS 381 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~ 381 (562)
||..+|++|+||||+++||.-+++.+.+.|-++.+ .|+.+++|||+..+. .-++++++||+. |||+..=+++
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA-lflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA-LFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH-HhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999999999999875 499999999998764 457999999985 7999887665
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-42 Score=348.76 Aligned_cols=219 Identities=23% Similarity=0.388 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+++|. .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999643 568999999998754333
Q ss_pred -CcEEEEccCCCCC--CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 229 -~~igyV~Q~~~l~--~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.++|++|++.+. ...++++|+.++...... ........+.++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011123345677889999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+++++ +|++++.|+++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999877999999999975 467899999888 8999999998876
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=6.3e-42 Score=340.56 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=171.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCChh-c-cCcEEEEccCCC--CCCCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 244 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~~-~-~~~igyV~Q~~~--l~~~l 244 (562)
+|+|+||+|++|++++|+||||||||||+++|+|... | +.+|+|.++|+++... . ++.++||+|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 1689999999987532 2 357999999984 55678
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
|+.||+.+...... .......+++.++++.+++.+.. ...+..+..|||||||||+|||||+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987643221 11233455688999999997320 01123457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999764 899999999976 477889999999999999999998874
No 259
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=377.85 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=182.3
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----h
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-----~ 226 (562)
++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888887 24579999999999999999999999999999999999653 468999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++||+|++.+++.+||+||+.++............+..+++.++++.+++.+..++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999998764211010012333445788899999998666654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||++||++. .+..+||+|++|++|++++.|+++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999878999999999975 46788999999999999999987664
No 260
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.4e-42 Score=377.96 Aligned_cols=221 Identities=29% Similarity=0.449 Sum_probs=184.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC----------
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~---------- 219 (562)
|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 2457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHH
Q 008534 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (562)
Q Consensus 220 -------------G~~~----------~----~~~~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v 271 (562)
|.++ . ..+++.++||+|+ +.+|+.+||+||+.++.... .....+..+++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3222 0 1235679999998 67888899999999875432 12344455678
Q ss_pred HHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEE
Q 008534 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (562)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii 350 (562)
.++++.+||.+..+.. +.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 8999999998765543 578999999999999999999999999999999999999999999999965 4899999
Q ss_pred EecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
+||++.. +.++||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999764 66789999999999999999998876654
No 261
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=343.52 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=181.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~--~~~G~I~i~G~~~~ 224 (562)
..|+++|++++| .++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 469999999998 235799999999999999999999999999999999996532 2 15899999997652
Q ss_pred --------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 --------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
..+++.++|++|++.+|+. ||+||+.++.... ... ....++++.++++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346779999999999985 9999999865322 111 2223456777788777743211111 234568
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.++||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999975 689999999975 467889999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999988764
No 262
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=343.11 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC------CEe
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~------G~~ 222 (562)
.|+++|++++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++ |.+
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcc
Confidence 69999999998 35679999999999999999999999999999999999543 345555554 455
Q ss_pred CC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 223 ~~----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
+. ..+++.++|++|++.+|+.+||+||+.++..... ...+.+..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998753221 1123344566888999999863211111 224578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|.++.+ +.|||++||++. .+...||++++|++|++++.|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 699999999975 466889999999999999999
Q ss_pred ChHHHH
Q 008534 379 KASEAM 384 (562)
Q Consensus 379 ~~~el~ 384 (562)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-42 Score=341.09 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=170.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++|. ..+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 46899999872 1356999999999999999999999999999999999954 3568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.++|++|++.+|+ .||+||+.++... ........ .+.+.++.+ +...++.+ +..+..|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIV-GERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchh-hcCCCcCCHHH
Confidence 34667999999999986 6999999875321 11111111 122223322 22223322 23357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999976 9999999999764 4 45999999999999999998
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 7764
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.2e-41 Score=331.95 Aligned_cols=190 Identities=31% Similarity=0.431 Sum_probs=162.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.+||.++..
T Consensus 1 l~~~~l~~~~~--------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG--------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC--------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 46899999882 357999999999999999999999999999999999964123568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 ~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
. .+..++|++|++.+++.+++++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1 2345999999999998888887760 0 1136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el 383 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++++|||++||++. .+.. .||++++|++|++++.|+ .++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999999999999999999877899999999976 3555 799999999999999994 446
Q ss_pred HHHHH
Q 008534 384 MAYFS 388 (562)
Q Consensus 384 ~~~f~ 388 (562)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 65553
No 265
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1e-41 Score=343.15 Aligned_cols=200 Identities=29% Similarity=0.472 Sum_probs=172.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+|+||||+|++|++++|+||||||||||+++|+|.. ++ +|+|.++|+++.. .+++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 7999999998742 3456799999998888789999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh-------CCCEEEEe
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~-------~P~iLlLD 320 (562)
||+.+..... ....+..+++.++++.++|.+..++. ++.||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9999863211 12333456788999999997665553 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877899999999975 477899999999999999999988763
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=384.01 Aligned_cols=225 Identities=22% Similarity=0.360 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~----- 223 (562)
+|+++||++.|.. .....++|+||||+|++||++||+||||||||||+++|+|.+. +.+|.|.++|..+
T Consensus 12 ~l~v~~l~~~y~~----~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQ----EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecC----CCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 6999999999831 1123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 008534 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 224 --------~~----~~~-~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
.. .++ +.||||+|++ .+++.+||.||+.++..... .....+..+++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2334455677889999999964210 1
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+.++.+|||||||||+|||||+.+|+||||||||++||+.++.++++.|++++++ |+|||+|||++. .+.++||+|+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 13356799999999999999999999999999999999999999999999999765 899999999975 4678999999
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988764
No 267
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-42 Score=319.73 Aligned_cols=212 Identities=32% Similarity=0.509 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++++++.+.. ......||++|++.|++||.+||||||||||||||-+++|. .. +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-DD-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-CC-CCCceEEEcCcchhhcCH
Confidence 5888888887621 23456899999999999999999999999999999999994 33 568999999999852
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+| ++||||||...|.|+||..||+...+.++.. +..+....+.++++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 233 6799999999999999999999998877632 233445567889999999876654 568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|||+||||++..|+|||.||||-+||..+..+|.+.|-.+.+ .|.|.|++|||+. +..-|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999865 4999999999975 567899999999999975
No 268
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-41 Score=330.72 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~ 225 (562)
+++++|+++.| +.+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchH
Confidence 37899999998 23569999999999999999999999999999999999643 56899999999874 2
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+++.+||.||+.+...... . ...+++.++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 356789999999999999999999998754321 1 2245678899999998665553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. +....+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999997778999999999764 55555777776
No 269
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-41 Score=377.52 Aligned_cols=226 Identities=27% Similarity=0.470 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeeccc---CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~---~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.|...+- ....++.+|+||||+|++||+++|+||||||||||+++|+|.+ + .+|+|+++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccc
Confidence 6999999999831000 0001357999999999999999999999999999999999964 3 58999999988642
Q ss_pred -------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008534 226 -------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (562)
Q Consensus 226 -------~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (562)
.+++.++||+|++ .+++.+||+||+.++...+.. .....+.++++.++++.++|. +..+. .+.+
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAE 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCcc
Confidence 1356799999997 488889999999987532210 122334456788999999996 34554 4578
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++.. +..+||+|++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~-~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV-VRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 8999999999754 6788999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+++++.
T Consensus 505 ~~~~~~~~~~ 514 (529)
T PRK15134 505 VEQGDCERVF 514 (529)
T ss_pred EEEcCHHHHh
Confidence 9999998874
No 270
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=324.16 Aligned_cols=170 Identities=31% Similarity=0.600 Sum_probs=153.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++++||+++|. .+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYG--------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEEC--------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 46899999882 3469999999999999999999999999999999999543 568999999998742 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+|+.+|+.||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998889999873 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
||||+.+|++|||||||++||+.++..+.+.|++++++|.|+|++||++. .+...||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999975 46678999999999974
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=375.76 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||++.|.. .+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 6999999998721 12356999999999999999999999999999999999954 33368999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCC--CccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (562)
..++.++||+|++ .+++.+||.||+.++....... ........+++.++++.+++. +..++. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998763211100 012333446688999999996 455554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 47789999999999999999
Q ss_pred cChHHH
Q 008534 378 GKASEA 383 (562)
Q Consensus 378 G~~~el 383 (562)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987664
No 272
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-41 Score=335.34 Aligned_cols=208 Identities=27% Similarity=0.448 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ...+++|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 478999999982 12357999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (562)
.+++.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 599999975321 111 2344455555554332 2222 23567899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 6899999999764 4 45999999999999998
Q ss_pred cC
Q 008534 378 GK 379 (562)
Q Consensus 378 G~ 379 (562)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
No 273
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.3e-41 Score=331.99 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-h
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~ 226 (562)
..|+++|++++| .++.+|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchh
Confidence 369999999987 24569999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.++|++|++.+++.+|++||+.+....+. . ..++.+.++++.++|.+..++. +..|||||||||+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999998999999988654321 1 1234567788999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||+|+.+|++|||||||++||+.++..+.+.|++++++|.|||++||++. .+.++||++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999976 47789999999863
No 274
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.7e-41 Score=329.55 Aligned_cols=195 Identities=27% Similarity=0.446 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~ 226 (562)
|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHH
Confidence 4689999988 2457999999999999999999999999999999999954 356899999998864 23
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||+||+.+.... ..++++.++++.+++.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 0234677889999998766554 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++.. +...|++++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4e-41 Score=373.28 Aligned_cols=224 Identities=23% Similarity=0.409 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~---~~~G~I~i~G~~~~~ 225 (562)
+|+++||++.|.. .+..+++|+||||+|++||+++|+||||||||||+++|+|.+..+ +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~----~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQ----QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecC----CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 6999999999831 011357999999999999999999999999999999999966421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 008534 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (562)
Q Consensus 226 -------~~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (562)
..+ +.||||+|++. +++.+||++|+.+...... ..+..+..+++.++++.+||.+. .++ .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999975 6677899999986543211 23344556778899999999752 243 4
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++.. +..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~-~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI-VRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH-HHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999765 8999999999764 6678999999999
Q ss_pred CeEEEecChHHHH
Q 008534 372 GSLLYFGKASEAM 384 (562)
Q Consensus 372 G~iv~~G~~~el~ 384 (562)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 276
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.8e-41 Score=372.75 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC-CEe---C
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~-G~~---~ 223 (562)
.+|+++||+++|... ..+.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 568999996 532 2
Q ss_pred C-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 008534 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (562)
Q Consensus 224 ~-------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (562)
. ...++.|+||+|++.+++.+||+||+.+..... ......++++.++++.++|.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 1 123567999999999999999999998764321 123334456888999999964 2343
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
++.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999764 899999999976 4778999999999
Q ss_pred CCeEEEecChHHHHH
Q 008534 371 KGSLLYFGKASEAMA 385 (562)
Q Consensus 371 ~G~iv~~G~~~el~~ 385 (562)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988754
No 277
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.7e-41 Score=409.58 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=197.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. +..+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123579999999999999999999999999999999999653 568999999998852
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.|||+||++.+++.+||+|||.+.+..+ +.+.++.++.++++++.++|.+..|+. +++|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHH
Confidence 34677999999999999999999999876554 233444556788899999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+||||++|++|++++.|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999998
Q ss_pred HHHH
Q 008534 385 AYFS 388 (562)
Q Consensus 385 ~~f~ 388 (562)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 278
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-42 Score=420.33 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=183.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+|+||+|+|. ...+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|++||.++.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCC
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (562)
+.+|++|+||||+|.+|+. ||+|||.... ..+ ++.+.++++..+| ++..||.+++. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999985 9999996421 122 2345556665554 46778888764 4569
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 47999999999864 45699999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
No 279
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.3e-41 Score=339.43 Aligned_cols=202 Identities=25% Similarity=0.450 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||++.| .++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 68999999998 24579999999999999999999999999999999999653 5689999987 2
Q ss_pred CcEEEEccCCCCCCC--CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~--lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..++|++|++.+++. .|+.+++.+.. ... .+++.++++.++|.+..++. +..|||||||||+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999888765 37888775421 111 23467889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+...||+|++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999976 46788999999964 799999988763
No 280
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.4e-41 Score=332.43 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=167.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5566777666 35679999999999999999999999999999999999543 568999999987531
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
..+...+++.+||+||+.++.... ........+++.++++.++|.+..++. +.+||||||||++||||
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 111234456789999999875432 122334455678889999998777664 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998865
No 281
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=312.33 Aligned_cols=216 Identities=31% Similarity=0.518 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC--C--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S-- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~--~-- 224 (562)
.|+++|+++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+. -+.+|+..+.|... +
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle-~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLE-MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHh-CCCCCeEEecccccccccC
Confidence 47899999988 3567999999999999999999999999999999998 454 35589999987643 2
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 ------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
..+|+.+|+|||...++|++||.|||.-+.. +. .++++++...++.++++++.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1478899999999999999999999976532 21 246778888899999999999988876 4567999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||.... ..+.+.+|+.|++|+||+.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeecCeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999653 56789999999999999999
Q ss_pred ChHH
Q 008534 379 KASE 382 (562)
Q Consensus 379 ~~~e 382 (562)
+++.
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8754
No 282
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-41 Score=360.47 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=191.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
+.++++||+++| +..++|+||||++.+||++||+|.||||||||+|+|+|. +. +++|+|++||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-~~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-YP-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-cc-CCCceEEECCEEccCCC
Confidence 369999999998 467899999999999999999999999999999999995 43 56899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC-CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
+....-|+.|+|+..|+|+|||.|||.++..... ..-+.+....+++.++|+.+++....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 2345679999999999999999999998865433 123567778888999999999864466655 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|-|.|||||..+++|||||||||+|+......+++.+++++++|.+||+|||++. +++++||||.||.+|+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999975 6999999999999999998887
No 283
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.4e-41 Score=336.64 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=168.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+++++|+++.|.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+ ++.+|+|.++|.++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 47999999999831 11246999999999999999999999999999999999964 3568999999987642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChhHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..++.++|++|++.+|+ .||+||+.++..........+......+.++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34567999999999887 59999998754211000000111122356778877 66544443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999865 6899999999764 5 45999999999974
No 284
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-41 Score=322.86 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=152.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|++++| .++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4689999988 23579999999999999999999999999999999999543 568999999988642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3457899999999999889999998642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+...||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999876 899999999975 4666899999999885
No 285
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-40 Score=335.55 Aligned_cols=219 Identities=22% Similarity=0.303 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecc------------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE
Q 008534 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~ 215 (562)
+.++++||++.|.... +.....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999998886521 001134579999999999999999999999999999999999653 56899
Q ss_pred EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 216 I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
|.++|. +++++|++.+++.+|+.||+.+..... ....+.....+.++++.++|.+..+.. +..
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788887888899999998765332 123344445567788888887766653 468
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|.++++.|+|||++||++. .+...||+|++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 467789999999999999
Q ss_pred EecChHHHHHH
Q 008534 376 YFGKASEAMAY 386 (562)
Q Consensus 376 ~~G~~~el~~~ 386 (562)
+.|+++++.+.
T Consensus 223 ~~g~~~~~~~~ 233 (264)
T PRK13546 223 DYGELDDVLPK 233 (264)
T ss_pred EeCCHHHHHHH
Confidence 99999887653
No 286
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=9.2e-41 Score=324.72 Aligned_cols=194 Identities=25% Similarity=0.393 Sum_probs=164.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++++|+++.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHH
Confidence 4689999988 2457999999999999999999999999999999999954 3568999999998642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++.+||.||+.+...... . .++++.++++.++|.+..++. +..|||||||||+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45679999999999988999999988653321 1 123577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++.. -.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999997779999999999754 35777764
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.4e-41 Score=321.18 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
|+++|++++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHH
Confidence 47899999882 11246999999999999999999999999999999999954 3568999999997642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 4677999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||++||++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999764 4 569999999999998765
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.7e-41 Score=338.80 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=172.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|++++|. ...+.+|+|+||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 123579999999999999999999999999999999999643 568999999998743
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.|+||+|++.+|+ .|++||+.... ....... ...+.+.++.+ +...++.++ ..+..|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 35678999999999887 59999986421 0111110 11123333333 112233332 34578999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||++||++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 44 49999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.7e-41 Score=325.22 Aligned_cols=194 Identities=26% Similarity=0.388 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|.++..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 1 MLDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLC 70 (200)
T ss_pred CEEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHH
Confidence 37899999998 24579999999999999999999999999999999999543 568999999998752
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++.+..+.. +..||||||||++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~ 137 (200)
T PRK13540 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVA 137 (200)
T ss_pred HHHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHH
Confidence 35678999999999988899999999864211 1 123678899999997655543 4589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++++.|.|||++||++.. ...||..+
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 9999999999999999999999999999999999987779999999999753 46677654
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-40 Score=329.15 Aligned_cols=209 Identities=25% Similarity=0.406 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC--CE--eCCh
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYSK 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~--G~--~~~~ 225 (562)
|+++||++.|..+. ..+..+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ-QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeeccc-CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchhh
Confidence 78999999983210 00012479999999999999999999999999999999999543 458999998 43 4321
Q ss_pred -------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCC
Q 008534 226 -------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGV 296 (562)
Q Consensus 226 -------~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~L 296 (562)
.. ++.++||+|++.+++.+||+||+.+..... ........+++.++++.++|.+. .+. .+.+|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~L 150 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPATF 150 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----CcccC
Confidence 12 356999999999999999999998864322 12333445577889999999753 233 35789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+++.+.
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999999999999999999999999999999999999999877999999999954 4557899998863
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.5e-41 Score=319.33 Aligned_cols=169 Identities=34% Similarity=0.616 Sum_probs=150.4
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
++++|++++|. ...+.+++|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 46899999872 123569999999999999999999999999999999999543 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+|+ .||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHHHHHH
Confidence 34678999999998887 4999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
No 292
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-41 Score=370.32 Aligned_cols=215 Identities=23% Similarity=0.423 Sum_probs=179.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.| . .+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~---------~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD---------R-KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC---------C-CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 1 38999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccC---CCCCCCCCHHHHHHHHHhhC---CCC--C-ccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 008534 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (562)
Q Consensus 226 ---~~~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (562)
..++.||||+|+ +.+++.+||+||+.++...+ ... . .......+++.++++.++|. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 235679999998 46888999999998753211 000 0 11223345678899999996 556654
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++. .+..+||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999877999999999975 477899999999999
Q ss_pred eEEEecCh
Q 008534 373 SLLYFGKA 380 (562)
Q Consensus 373 ~iv~~G~~ 380 (562)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
No 293
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-40 Score=403.84 Aligned_cols=223 Identities=21% Similarity=0.374 Sum_probs=195.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. ++++.+|+|+||++++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4799999999982 124679999999999999999999999999999999999653 568999999998853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..|+.+|||+|++.+++.+||+|||.|.+..+ .....+.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 35678999999999999999999999987654 223444556788999999998777664 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|||||+.+|+||||||||+|||+.++..+++.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999975 467899999999999999999999998
Q ss_pred HHHH
Q 008534 385 AYFS 388 (562)
Q Consensus 385 ~~f~ 388 (562)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7664
No 294
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.6e-41 Score=320.70 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=152.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++| +|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999864 8999999999999999999999999999999999543 568999999998752
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2466899999995 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++. .+.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999777899999999975 47788999999999974
No 295
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-40 Score=325.16 Aligned_cols=198 Identities=21% Similarity=0.399 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|++++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 589999999982 112469999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.|+||+|++.+|+ .||+||+.+.. .... +.+.+.++ + + ..+..|||||+||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 59999997531 1111 12333333 2 1 23578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|++++.|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.7e-41 Score=368.57 Aligned_cols=221 Identities=21% Similarity=0.369 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++.|. .++++.+|+|+||+|++||+++|+||||||||||+++|+|.+ .|+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~-----~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDV-----INPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCccccc-----ccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCH
Confidence 699999998762 111346999999999999999999999999999999999965 33358999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC--CCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
.+++++|||+|++ .+++.+||+||+.++...... ........++++.++++.++|.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 2457799999996 588899999999876321110 01123334566889999999963 44554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++||++. .+.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 47789999999999999988
Q ss_pred cChH
Q 008534 378 GKAS 381 (562)
Q Consensus 378 G~~~ 381 (562)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 297
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.2e-42 Score=384.11 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=169.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|+|+.+ ....+++|+|+||++++|++++|+||||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~~i~~~~v~f~y~~~---~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAP---EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCC---CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 369999999999321 00124699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC-cccCCCChhHHH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERK 302 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~-~~~~~LSGGqrq 302 (562)
.+++.++||+|++.+|++ |+++|+. + ...++++.++++.+++.+..+....+ .....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8999841 1 11234566788888876544332211 113579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~-~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|++|||||+.+|+||||||||++||+.++..+.+.+. .+...|+|+|++||+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45556899999999985 3578999999999999864
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.4e-41 Score=367.41 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 23469999999999999999999999999999999999653 568999999976532
Q ss_pred -hccCcEEEEccCCCC--C-C-----CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l--~-~-----~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
..++.++|++|++.+ + + .+||+||+.+. ....+++.++++.+||.+..+.. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234569999998643 1 1 46888887542 11245678899999998766654 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988753
No 299
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-40 Score=323.98 Aligned_cols=198 Identities=26% Similarity=0.413 Sum_probs=167.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
+|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 58999999998 23569999999999999999999999999999999999543 568999999987642 25
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+.. ++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHH
Confidence 6779999999888888999999987653321 1 123477899999997655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|||+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++.+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999987779999999999764 43 3 88887744
No 300
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3e-40 Score=339.92 Aligned_cols=230 Identities=26% Similarity=0.483 Sum_probs=200.3
Q ss_pred CceeEEEEeEEEEEeecccCC---ccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 146 LPIYLKFTDVTYKVILKGMTS---SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~---~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
.++.++.+||...|+.++.-- .....++++||+++++||.++|||.||||||||-.+|.+.+ +.+|+|.|+|.+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCcc
Confidence 356799999999997754211 12346999999999999999999999999999999999644 236999999999
Q ss_pred CCh-------hccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 223 YSK-------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 223 ~~~-------~~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
+.. .+|+++-.|||||+ |-|.|||.+-|.-+.....| ..++.++++++.+.|+++||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 46889999999985 88999999999998876543 468899999999999999997532 25689
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++||||+. .+-.+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999965 5999999999975 477799999999999
Q ss_pred eEEEecChHHHH
Q 008534 373 SLLYFGKASEAM 384 (562)
Q Consensus 373 ~iv~~G~~~el~ 384 (562)
+||++|+.+++.
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999875
No 301
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.6e-40 Score=317.61 Aligned_cols=177 Identities=32% Similarity=0.574 Sum_probs=150.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh------hccCcEEEEccCC--CC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~------~~~~~igyV~Q~~--~l 240 (562)
++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .+++.++||+|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999643 568999999998731 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
++ .||+||+.++.... ........+++.++++.++|.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 64 79999999875432 123344455688899999998766654 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999974
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=352.10 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+++++||+|.|. .+..+++|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~-----~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSK-----DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecC-----CCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 688999988872 1123579999999999999999999999999999999999653 5689999999752
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
++.+.+.+++.+||+||+.+..... .....+..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445667789999998754322 123444455677889999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 309 aLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++...|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 467889999999999999999998876544
No 303
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=362.57 Aligned_cols=214 Identities=23% Similarity=0.416 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 26999999999999999999999999999999999653 458999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC---CCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..++.||||+|++ .+++.+||.||+.++...... .........+++.++++.++|. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2456799999996 578889999999875321100 0012233445688999999995 455554 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+..+||+|++|++|++++
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778999999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
No 304
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=318.98 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=193.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+++++||+++| +.+.||+++|+.|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 47899999998 4778999999999999999999999999999999999 5543 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+.++++.+-|+..+-..+||+|-+.||.... ..+....+++..+++.++.++|.+..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 356778999999999888999999999985332 12333456677899999999999877764 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
-||..|+.+.+.++||||.++||-.....+++.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999876 9999999999875 5578999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
+.
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 63
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7.3e-40 Score=324.54 Aligned_cols=197 Identities=28% Similarity=0.432 Sum_probs=163.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC--CCCHHHHHHHHHh
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~--~lTV~enl~~~~~ 255 (562)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .++.++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999543 568999999998643 4567999999987642 4799999987632
Q ss_pred hCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
.... ..........++.++++.+++.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011123345678899999998766554 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.|++++++|+|+|++||++. .+.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999976 477899999999 89999999988763
No 306
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-40 Score=362.70 Aligned_cols=215 Identities=20% Similarity=0.372 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++|+++. .+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCH
Confidence 5888888631 4899999999999999999999999999999999965 3568999999988642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCC-CCC--ccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (562)
..++.++|++|++ .+|+.+||.||+.++..... +.. ......++.+.++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 001 11223345678899999994 555654 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++.|.|||++|||+. .+..+||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 4778999999999999999
Q ss_pred ecChHHH
Q 008534 377 FGKASEA 383 (562)
Q Consensus 377 ~G~~~el 383 (562)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9988663
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=4.1e-40 Score=315.79 Aligned_cols=175 Identities=33% Similarity=0.579 Sum_probs=149.7
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~ 226 (562)
+++||+++|. .+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~~--------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYG--------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEEC--------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHH
Confidence 4789999882 356999999999999999999999999999999999954 3568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.++|++| +++.+||.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4455666554443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|++||++. .+.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
No 308
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.4e-40 Score=319.26 Aligned_cols=194 Identities=27% Similarity=0.447 Sum_probs=152.6
Q ss_pred EEEEeEEEEEeecccCCcc--ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~--~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++++||+++|.. .. .+++|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC-------
Confidence 478999999821 11 136999999999999999999999999999999999954 35689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (562)
+|+|++|++.+|+ .|++||+.+.... ... ...+.++.+++.+ ..++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKPF------DEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCCc------CHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999985 6999999875321 111 1122222222221 2233322 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||++|||||+.+|+++||||||++||+.++..+.+ .++++.++|+|||++||++.. +.. ||++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 466666668999999999754 444 99999999985
No 309
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-39 Score=363.00 Aligned_cols=203 Identities=23% Similarity=0.313 Sum_probs=170.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||+|+|+ .++++|+|+||+|++|+.++|+||||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 322 ~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~~ 392 (547)
T PRK10522 322 TLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQP 392 (547)
T ss_pred eEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCCH
Confidence 699999999983 234699999999999999999999999999999999984 44 458999999999863
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc--ccCCCChhHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGERK 302 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGqrq 302 (562)
.++++|+||+|++.+|+. |++|| + + . ..++.+.++++.+++.+..+. ++. ....|||||||
T Consensus 393 ~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~q 456 (547)
T PRK10522 393 EDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKK 456 (547)
T ss_pred HHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHH
Confidence 568899999999999974 88887 1 0 1 123456788888888754432 221 13579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|++|||||+++|++||||||||+||+.++..+.+.|.+..+ .++|+|++||+++ ....||+|++|++|++++..
T Consensus 457 Rl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 457 RLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999987643 5899999999975 46789999999999998773
No 310
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-41 Score=409.69 Aligned_cols=340 Identities=18% Similarity=0.175 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccc-cccchhhh
Q 008534 13 TKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELD-EVSSGAAL 91 (562)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 91 (562)
+.++.-.+.++...|.+.+.++||.|+.+....+++.+..........+.....+..... ......+. -+..|+.+
T Consensus 470 ~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~fg~~~ 546 (1495)
T PLN03232 470 EGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI---LNSIPVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 334455666778888899999999999988777777643322222211111000000000 00000011 12345554
Q ss_pred hhhhhhhhhhhcccccCCC----CccccccC------CCCCCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEEEee
Q 008534 92 SRASSASLGLSFSFTGFTM----PPDEIADS------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (562)
Q Consensus 92 ~~~~~~~~g~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~y~~ 161 (562)
...+..+.|..+++..+.. |...+... ...+..++.+-+...+...............++++|++|.|+.
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCC
Confidence 5445555565555432111 11100000 0000011111111110000000000011235999999999831
Q ss_pred cccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC
Q 008534 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (562)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~ 241 (562)
..++++|+|+||+|++||.++|+||||||||||+++|+|.+ +| .+|.+. .+++.|+||+|++.+|
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~-~~G~i~--------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 627 -----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SH-AETSSV--------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred -----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cc-cCCCEE--------EecCcEEEEcCccccc
Confidence 12467999999999999999999999999999999999854 33 466552 3567899999999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
+ .||+|||.|+.. .++++ .+++++.. .|+++.+|.+|++. ..|||||||||+|||||+++|
T Consensus 692 ~-gTIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 692 N-ATVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred c-ccHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCC
Confidence 7 599999999742 12222 22233222 45778899999764 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 315 ~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+|||||||||+||+.++..+++. ++.+. +++|+|++||+++. ...||+|++|++|++++.|+++++++
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~--l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHF--LPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhh--HHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999988765 44433 58999999999864 57899999999999999999999864
No 311
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.1e-39 Score=338.82 Aligned_cols=187 Identities=31% Similarity=0.524 Sum_probs=162.3
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHH
Q 008534 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (562)
Q Consensus 188 lvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~ 265 (562)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.|+||+|++.+|+++||+||+.|+...+ .....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999543 568999999998753 24567999999999999999999999986432 22344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 008534 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (562)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~- 344 (562)
+..+++.++++.++|.+..++. +.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4556788999999998766654 5789999999999999999999999999999999999999999999999765
Q ss_pred CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 345 g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|+|||++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 4778999999999999999999998753
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.8e-39 Score=318.72 Aligned_cols=200 Identities=26% Similarity=0.426 Sum_probs=157.9
Q ss_pred EEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 008534 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (562)
Q Consensus 151 ~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----- 225 (562)
.+.|+.|.|. ..+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 458999999987632
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCcccCC
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~ 295 (562)
..++.++|++|++.+|+ .|++||+.+... .... ...++++.++|.+.. ++.. +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 23467999999998885 799999987531 1111 123344445543322 2222 234678
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~--~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||||||+|||||+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|++||++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 666666668999999999864 4 5799999999884
No 313
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.6e-39 Score=358.95 Aligned_cols=214 Identities=22% Similarity=0.310 Sum_probs=176.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++|+++ .+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCH
Confidence 688888872 15999999999999999999999999999999999643 558999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChh
Q 008534 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 --~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGG 299 (562)
..++.|+||+|++ .+|+.+|+.||+.................++.+.++++.++|. +..++. +..||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999985 4888899999996431110010011222345678899999996 556654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|++++.|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999975 4778999999999999999998
Q ss_pred hHHH
Q 008534 380 ASEA 383 (562)
Q Consensus 380 ~~el 383 (562)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7654
No 314
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=327.45 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=171.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEccCCCCCCCCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~~~igyV~Q~~~l~~~lT 245 (562)
=+++|..+.-.++||-|+||||||||+|+|+|... +++|.|.+||..+.+ ..+++|||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 36788887757999999999999999999999654 568999999986531 24788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+.||.|+.... .....+++++.+|+.+..+. ++..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986321 23456778899999988776 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||-....+++-.|.++.++ +..|+++||-+. ++.++||+|++|++|++.++|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 789999999965 6889999999999999999999998753
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-39 Score=308.35 Aligned_cols=167 Identities=37% Similarity=0.647 Sum_probs=147.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.|. .....+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYP------GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 46899999882 112369999999999999999999999999999999999643 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.++|++|++.+|+ .|++||+ |||||||||+
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34667999999998886 5999887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 555 99999999985
No 316
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=341.16 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
.++++++++.| +...+++||||+|++||+.||+|.||||||||+++|.|. +. |++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 68999999998 367899999999999999999999999999999999995 44 45899999999874
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 225 -~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
+..+..||+|+|++.|+|++||.|||.++...............+++.++.+.+||+-..|..+ ..||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2456789999999999999999999999864322223456677788999999999986666654 5899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|.|-++|+++|++|||||||+-|-|....++++.|++++++|+|||+|||.+. ++.+.|||+-||..|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999976 5889999999999999876655
No 317
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.4e-39 Score=311.71 Aligned_cols=192 Identities=21% Similarity=0.314 Sum_probs=159.5
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|++++|. ++.+++ +||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~~--------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNIE--------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEEC--------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 78999999981 344555 999999999999999999999999999999543 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998864321 1 133567788889987665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
|+.+|++|||||||+|||+.++..+.+.|++..+.|+|+|++||++.. ...+|-|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999998776678999999999764 35566553
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.2e-39 Score=303.68 Aligned_cols=157 Identities=31% Similarity=0.479 Sum_probs=141.2
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++||++.|. ++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRFG--------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEEC--------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 46899999982 3479999999999999999999999999999999999643 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999975 4667899999999999975
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-38 Score=326.83 Aligned_cols=204 Identities=29% Similarity=0.440 Sum_probs=163.0
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
.+..|+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-----
Confidence 3456999999984 2469999999999999999999999999999999999653 5689999998
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCcccCCCCh
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LSG 298 (562)
.|+|++|++.+++. ||+||+.++... ... ++.+.++.+++. ...++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 110 112223333332 22233332 23568999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||++|||+|+.+|++|||||||+|||+.++..+++.+ +.+. .+.|||++||++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999865 5554 47899999999764 4 57999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
No 320
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=360.70 Aligned_cols=220 Identities=27% Similarity=0.468 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++|+++.|.. ..+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~----~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPS----GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCC----CCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 6999999999831 1123579999999999999999999999999999999999643 568999999998752
Q ss_pred -h----ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -~----~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
. .++.++|++|++.+|+++|+.||+.+..... .....+.++++.++++.+||.+..++. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865332 223445566788999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||++.. ...||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~--~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV--AAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH--HHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999999998779999999999753 467999999999999999999
Q ss_pred HHHH
Q 008534 381 SEAM 384 (562)
Q Consensus 381 ~el~ 384 (562)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8764
No 321
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-39 Score=355.01 Aligned_cols=211 Identities=27% Similarity=0.445 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++++|+|+||+|++||+++|+|||||||||||++|+|.+. +.+|+|.++|.
T Consensus 1 ml~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~------- 63 (530)
T PRK15064 1 MLSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN------- 63 (530)
T ss_pred CEEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------
Confidence 37899999998 24579999999999999999999999999999999999653 45899999873
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-h-----------CCCCC-----------------ccHHHHHHHHHHHHHHcC
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELG 279 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lg 279 (562)
..||||+|++.+++.+||+||+.++.. . ..+.. ....+.+.++.++++.+|
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 359999999999999999999987531 0 00000 000122356788999999
Q ss_pred CCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 008534 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (562)
Q Consensus 280 L~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i 359 (562)
|.+..+. ..+..|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+|||++. .+
T Consensus 144 l~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~ 215 (530)
T PRK15064 144 IPEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FL 215 (530)
T ss_pred CChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HH
Confidence 9753321 23468999999999999999999999999999999999999999999863 5899999999975 47
Q ss_pred HhcCCEEEEEcCCeE-EEecChHHHH
Q 008534 360 FHKFDKLILLGKGSL-LYFGKASEAM 384 (562)
Q Consensus 360 ~~~~D~i~vL~~G~i-v~~G~~~el~ 384 (562)
.+.||+|++|++|++ ++.|++++.+
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHH
Confidence 789999999999999 5899887664
No 322
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-40 Score=404.72 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc-cEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~-G~I~i~G~~~~~~~ 227 (562)
.++++|++|.|+. ..++++|+|+||+|++|++++|+||||||||||+++|.|.+. +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------
Confidence 5999999999831 124679999999999999999999999999999999999543 457 89974
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGq 300 (562)
+.+|+||+|+|.+|+ .||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|++. ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCC-CCHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 457999999999997 599999999742 1222 233333322 35778899998764 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+++|+|||||||||+||+.++..+++ .++.+. +++|+|++||++. ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999998865 555554 5899999999985 467899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++++
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
No 323
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.1e-38 Score=302.48 Aligned_cols=164 Identities=29% Similarity=0.524 Sum_probs=143.6
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|++++|. ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 46899999872 13569999999999999999999999999999999999543 56899999873 5
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++|++.++ .+||+||+.+. .+..||||||||++||||
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 47999998752 125799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+.+|++|||||||++||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|-
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 99999999999999999999999999999876 589999999975 347899999998763
No 324
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=305.73 Aligned_cols=194 Identities=28% Similarity=0.490 Sum_probs=169.2
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEccCCCCCCC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~ 243 (562)
.+.++|+|+||++.+||.++|.||||||||||+|+++. +. ++++|.+++.|++++ +.+|.+|+||.|.|.||++
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 46789999999999999999999999999999999996 44 356899999999986 3689999999999999986
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
||++|+.|....+-.+ .+.+++.++++++++++.. .++.+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~----L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSI----LTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-----CChHHHHHHHHHcCCchhh----hcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987665221 1345677899999997643 23456789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|+||+.+++.|-++|.++. .+...++.|||++.. ..+.||+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999996 568999999999764 5689999999999876
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.6e-38 Score=354.49 Aligned_cols=210 Identities=28% Similarity=0.384 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++|+++||++.|. .++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 3799999999981 14679999999999999999999999999999999999653 56899999752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhh---------------CCCC-CccH-----------------HHHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPN-TLTK-----------------QQKEKRAIDV 274 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~---------------~~~~-~~~~-----------------~~~~~~v~~~ 274 (562)
..||||+|++.+++.+||.||+.++... ..+. .... .+...++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875310 0000 0000 0113467788
Q ss_pred HHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 008534 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (562)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~ 354 (562)
++.+||+. .+. .+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCC
Confidence 89999953 444 356899999999999999999999999999999999999999999999863 599999999
Q ss_pred CChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+. .+...||+|++|++|+++ +.|+.++.
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 75 467889999999999986 88887754
No 326
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-38 Score=303.22 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEeecccCCccc-cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~-~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
+|+++|++++. .+ +.||++||++|++||+.+||||||||||||.++|+|+-....++|+|+++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 68999999987 24 58999999999999999999999999999999999964222468999999999852
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 301 (562)
..|.-|...+|.|.=+|..++.+.|..+...+....-...+....+.+.++.+++++ ..++.+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 456778999999999999999999998875532211012355667888999999986 4555443 57999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC--CEEEEEcCCeEEEecC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (562)
||..|+..++.+|++.|||||-||||..+-..|-+.+..+...|.++++|||.. .+..+. |+|.||.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999998999999999984 466665 9999999999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 008534 380 ASEAMAYFSSIGCSP 394 (562)
Q Consensus 380 ~~el~~~f~~~g~~~ 394 (562)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999988854
No 327
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=348.51 Aligned_cols=216 Identities=19% Similarity=0.367 Sum_probs=175.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.+ +.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 369999998852 259999999999999999999999999999999999553 568999999988742
Q ss_pred ---hccCcEEEEccCC---CCCCCCCHHHHHHHHHh--hCCCCC-ccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC
Q 008534 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--LRLPNT-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (562)
Q Consensus 226 ---~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (562)
..++.++|++|++ .+|+.+|+.+|+.+... ...... ......++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888898887433210 000001 12233445678889999985 33454 4578
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.+.|.|||++||++. .+..+||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 477899999999999999
Q ss_pred EecChH
Q 008534 376 YFGKAS 381 (562)
Q Consensus 376 ~~G~~~ 381 (562)
..++.+
T Consensus 471 ~~~~~~ 476 (491)
T PRK10982 471 GIVDTK 476 (491)
T ss_pred EEEccc
Confidence 877553
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.6e-38 Score=347.71 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=171.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. .++.+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 2356999999999999999999999999999999999953 22258999999986521
Q ss_pred ---hccCcEEEEccCCCCCC--CCCHHHHHHHHHhh--CCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCC
Q 008534 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~--~lTV~enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (562)
..++.|+||+|++.++. ..++++++.++... ....... ...++++.++++.++|.+ ..++. +.+||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0001111 223456888999999986 55554 46899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHh-cCCEEEEEcCCeEE
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv 375 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++++ .|||++||++.. +.+ +||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceE
Confidence 999999999999999999999999999999999999999999998765 479999999764 555 58999999999988
Q ss_pred Eec
Q 008534 376 YFG 378 (562)
Q Consensus 376 ~~G 378 (562)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 329
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.8e-40 Score=370.35 Aligned_cols=340 Identities=16% Similarity=0.161 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccc-cccccc-c
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL-KLELDE-V 85 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~ 85 (562)
.++.++.++..++..+..+|.....++|++|+++..+.+++.+..........+.......+......... -..+.. +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999999887766654433211111111000000000 001111 1
Q ss_pred cchhhhhh-h----hhhhhhhhcc-cccC-------CCC------------ccccccCCCCCCCCCcccccccc----CC
Q 008534 86 SSGAALSR-A----SSASLGLSFS-FTGF-------TMP------------PDEIADSKPFSDDDIPEDIEAGT----RE 136 (562)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (562)
..|+.... . +..+.|.+.+ |..+ ..| .......+.+...+...++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221111 1 2333333222 1111 001 11111112222221111111000 00
Q ss_pred CC-----------C----CCCCCCCceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 008534 137 RP-----------K----FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (562)
Q Consensus 137 ~~-----------~----~~~~~~~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~ 201 (562)
.. . ..........|+++||++.|+ .++++|+|+||+|++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 00 0 000011123699999999872 1347999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC
Q 008534 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (562)
Q Consensus 202 ~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (562)
+|+|. + ++.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....++++.++++.+++.
T Consensus 497 lL~Gl-~-~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGEL-W-PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCC-C-CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCH
Confidence 99995 4 35589998864 4679999999999986 9999999864211000 0001134567788888887
Q ss_pred cccccccc----CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 282 RCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 282 ~~~~t~vg----~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+..++..| ......||||||||++|||||+++|++|||||||++||+.++..+.+.+++ .|+|+|+++|+++.
T Consensus 565 ~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~ 641 (659)
T TIGR00954 565 HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL 641 (659)
T ss_pred HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH
Confidence 64433211 113468999999999999999999999999999999999999999998876 38999999999864
Q ss_pred HHHhcCCEEEEEcC
Q 008534 358 RLFHKFDKLILLGK 371 (562)
Q Consensus 358 ~i~~~~D~i~vL~~ 371 (562)
.+.||++++|++
T Consensus 642 --~~~~d~il~l~~ 653 (659)
T TIGR00954 642 --WKYHEYLLYMDG 653 (659)
T ss_pred --HHhCCEEEEEeC
Confidence 578999999963
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.6e-38 Score=310.61 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=158.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-ECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
.+|+||||+|++|++++|+||||||||||+++|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999543 5689997 777543 13356778899999999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+.+...... ....+.. ..+.+.++|++..++. ++.||||||||++|||||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222221 2333456777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
++..+.+.|.+..+ ++|+|++||++. .+..+||++++|++|++++.|+.+++..+++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866543 578999999976 46678999999999999999999999877654
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=349.59 Aligned_cols=204 Identities=23% Similarity=0.366 Sum_probs=171.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 24569999999999999999999999999999999999543 55899999873
Q ss_pred cCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHH
Q 008534 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 228 ~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
+.+|||+|++. +++.+||+||+.+.. .. . ..++++.++++.+++. +..+. .+.+|||||||||
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 0 1234577889999984 44454 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++. .+..+||+|++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999876 359999999975 467789999999999998 88988776
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
++
T Consensus 524 ~~ 525 (530)
T PRK15064 524 LR 525 (530)
T ss_pred HH
Confidence 43
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.6e-38 Score=350.49 Aligned_cols=210 Identities=27% Similarity=0.371 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+++++||+++|. .++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 699999999981 13579999999999999999999999999999999999643 4689999975 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhh-CC-----------CCCccHH---------------------HHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (562)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000000 0123456677
Q ss_pred HHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+.+|++. .++ .+..|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7788853 343 35689999999999999999999999999999999999999999999875 35999999997
Q ss_pred ChHHHhcCCEEEEEcCCeEE-EecChHHHH
Q 008534 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (562)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~el~ 384 (562)
. .+...||+|++|++|+++ +.|+.++..
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 5 467789999999999976 789887643
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-38 Score=311.17 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|+++||++.| .+++||+|+|++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|++..
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999998 4789999999999999999999999999999999999943 455899999999864
Q ss_pred --hhccCcEEEEccC--CCCCCCCCHHHHHHHHHh--hCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 225 --~~~~~~igyV~Q~--~~l~~~lTV~enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.++|++||||.-. ..+.+..+|+|-+.-+.. .........++..+++..+++.+|+.+..|..+ ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3578999999743 334556788888764322 111111234556678889999999998887754 58999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||-|||||+.+|++|||||||+|||...+..+++.|.+++.. +.++|+|||+.. ++...++++++|++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 5778899999999999999
Q ss_pred ecC
Q 008534 377 FGK 379 (562)
Q Consensus 377 ~G~ 379 (562)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1e-37 Score=321.25 Aligned_cols=227 Identities=25% Similarity=0.454 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---CccEEEECCEeCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~---~~G~I~i~G~~~~- 224 (562)
.|+++|++..|.. ..+...++++|||.|++||.+||||.||||||-..+.|+|.+..+. -+|+|.|+|.++-
T Consensus 6 lL~v~nLsV~f~~----~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQ----EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEec----CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 6899999998843 2356789999999999999999999999999999999998776532 4799999999873
Q ss_pred ---hh---cc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 ---KS---LK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 ---~~---~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+. +| .+|+++||+|. |-|-.|+..-|.-...+. .++++++.++++.++++.+|+++....+ +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 12 23 46999999984 677678888877665543 3567888889999999999998765442 578999
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||||||||.||.||+.+|++||.||||++||...+.+|++.|++|.++ |..+++||||+.- +-+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999754 9999999999864 6788999999999999
Q ss_pred EEecChHHHH
Q 008534 375 LYFGKASEAM 384 (562)
Q Consensus 375 v~~G~~~el~ 384 (562)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988875
No 335
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.4e-37 Score=312.98 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=154.7
Q ss_pred ceeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
..++|++++++ +||+++|+||||||||||+++|+|.+. +.+|+|.++|. .|+|++|++..++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36777777776 799999999999999999999999543 56899999985 5999999988766789
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 112356788899998766654 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEE--EecChHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~el 383 (562)
||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999754 899999999975 466789999999764333 44455554
No 336
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=310.14 Aligned_cols=193 Identities=26% Similarity=0.448 Sum_probs=164.4
Q ss_pred eEEEEeEEEEEeeccc-CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~-~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
.++++|+++.|..+.. .......+++||||+|++||+++|||+||||||||-|+|.|+ .+ +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 6899999999865321 111124799999999999999999999999999999999974 44 45899999999864321
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+++..+++.++|+.+||+.. ..++++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~----~~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEE----FLYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHH----HhhcCCcccCchhhhhHHHH
Confidence 23455678999999998642 22457899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++|+||++. +..+||||.||..|+||+.|+.+++.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEecCHHHHh
Confidence 9999999999999999999999999999999999765 9999999999764 77899999999999999999999885
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.1e-37 Score=343.12 Aligned_cols=205 Identities=22% Similarity=0.370 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 479999999998 24579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..||||+|++ .+++.+||+||+.++..... .... +..+.++++.+++.+ ..+. .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 1111 123456889999963 3454 35689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEE-EecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~el 383 (562)
|||||+.+|+||||||||+|||+.++..+.+.|+++. | |||++||++. .+..+||+|++|++ |+++ +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999873 4 8999999975 47788999999986 7876 56766554
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.9e-37 Score=340.61 Aligned_cols=205 Identities=25% Similarity=0.390 Sum_probs=167.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 369999999998 24579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..||||+|++ .+++.+||.||+.++.... ..... +.++.++++.+++.+ ..+.. +..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 4788899999999864321 11111 223557889999963 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC-CeEE-EecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~el 383 (562)
|||+|+.+|+||||||||+|||+.++..+.+.|+++. + |||++||++. .+..+||+|++|++ |+++ +.|+.++.
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~~ 529 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSEY 529 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHHH
Confidence 9999999999999999999999999999999999873 4 8999999975 46788999999986 5876 56766543
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=291.58 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC-EeCCh-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G-~~~~~- 225 (562)
..|+++||+.++ ++..+|+++||++.+||+-+|+|||||||||++++|+|.. ++..|+++++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 4678999999999999999999999999999999999953 46689999999 77753
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
..|..||--||.|..|+.+||+|||.++.....+- .....+.+.+++++|...||.+..+..- ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 24667999999999999999999999986432110 0113345568999999999998887653 479
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|-||||++.|++-|+.+|++|+||||++|+--....+.-++|+.++. +++|+++.||+.. +..++|+|-||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~F-vr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGF-VREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHH-HHHhhheeEEEeccceee
Confidence 99999999999999999999999999999988888999999999985 6899999999764 778999999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
No 340
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=305.52 Aligned_cols=208 Identities=27% Similarity=0.422 Sum_probs=180.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEc-cCCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPHLT 245 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~-Q~~~l~~~lT 245 (562)
..+++||||+|++|++++++|||||||||+||+|+|.+. |++|.|.++|.+.-+ .+-+++++|+ |-..+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 469999999999999999999999999999999999765 568999999986532 3446688776 4456666677
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
+.|.+......+ .++.....++...+.+.++|+...+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888887654443 466778888999999999998776654 588999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
||..++..|.+.|++..+ .+.||+++||+++. +..+||||++|+.|+++|.|+.+++.+.|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~d-i~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhh-HHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999965 48999999999875 889999999999999999999999987764
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-36 Score=339.69 Aligned_cols=197 Identities=29% Similarity=0.366 Sum_probs=168.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.|. + ..|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~~--------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKLG--------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEEC--------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 4699999999881 2 35999999999999999999999999999999999653 568999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
..|+|++|++.+++.+||+||+.++... ... ...+.++++.++|.+..++. +.+|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 12467889999998766654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+||+|++|+ |++...|.
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999764 899999999975 4677899999996 58887776
No 342
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-37 Score=365.65 Aligned_cols=334 Identities=22% Similarity=0.297 Sum_probs=226.5
Q ss_pred hcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeeccccccccccccc--chhhhh---h----hhh
Q 008534 26 FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS--SGAALS---R----ASS 96 (562)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~---~----~~~ 96 (562)
.|++....|||||+.+..-.+++..++..-.+.-+. .... .|-+...++++... ..+++. . .++
T Consensus 1001 ~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~-~~~a------~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~ 1073 (1381)
T KOG0054|consen 1001 SETLQGLSTIRAFGKEERFIQENDELIDENSRAFFL-SISA------NRWLAVRLELLGNLVVLIAALFAVLLPSGLISP 1073 (1381)
T ss_pred HHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 456677789999999999999998888665443221 0111 12223344544211 111111 0 111
Q ss_pred hhhhhhcccccCCC--------Ccc-----ccccCCCCCCCCCccccccccCCCCC--CCCCCCCceeEEEEeEEEEEee
Q 008534 97 ASLGLSFSFTGFTM--------PPD-----EIADSKPFSDDDIPEDIEAGTRERPK--FQTEPTLPIYLKFTDVTYKVIL 161 (562)
Q Consensus 97 ~~~g~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~nvs~~y~~ 161 (562)
-..|...+++.--. ... .++-.|...+.+++++ ++.+.+. +...-+..+.|+|+|++.+|.
T Consensus 1074 g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E---~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr- 1149 (1381)
T KOG0054|consen 1074 GLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE---APLEIEESRPPPSWPSKGEIEFEDLSLRYR- 1149 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC---CCCCCcCCCCCCCCCCCCeEEEEEeEEEeC-
Confidence 23334333332100 011 1111233334333332 1111111 111112235799999999993
Q ss_pred cccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccC
Q 008534 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQD 237 (562)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~ 237 (562)
.+...|||||||+|+|||.+||||..|||||||+++|- |+.++ .+|+|.|||.++.+ .+|++++.+|||
T Consensus 1150 -----p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQd 1222 (1381)
T KOG0054|consen 1150 -----PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQD 1222 (1381)
T ss_pred -----CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCCC
Confidence 23568999999999999999999999999999999999 56554 58999999999974 689999999999
Q ss_pred CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEE
Q 008534 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (562)
Q Consensus 238 ~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iL 317 (562)
|.+|.+ |||.||.-.... ..+.+.++-.+....+.++ .++...|+.|.+. ..++|-||||-++|||||+++++||
T Consensus 1223 PvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~eg-G~N~SvGQRQLlCLARALLr~skIL 1297 (1381)
T KOG0054|consen 1223 PVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSEG-GENFSVGQRQLLCLARALLRKSKIL 1297 (1381)
T ss_pred CceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecCC-CccCChHHHHHHHHHHHHhccCCEE
Confidence 999985 999999732110 0011111112222333333 3345567776543 4679999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
+|||+|+++|+.+-..|.+.|++-- +++|||.|.|++.+ + -.+|||+||++|+++++|+|.++++
T Consensus 1298 vLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1298 VLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999999999854 37999999999987 4 3599999999999999999999974
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=342.11 Aligned_cols=203 Identities=29% Similarity=0.439 Sum_probs=169.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++.+|+|+||+|++|++++|+|||||||||||++|+|.+. +++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 24579999999999999999999999999999999999653 56899999742
Q ss_pred cCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHH
Q 008534 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 228 ~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..|||++|+. .+.+..|+.+++... . ......++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~---~------~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL---A------PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh---C------chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 0 1122456788999999963 45544 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
+|||+|+.+|+||||||||+|||+.+...+.+.|+++ .| |||+||||+. .+..+||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999975 477899999999999997 88998876
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
No 344
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-36 Score=307.65 Aligned_cols=199 Identities=26% Similarity=0.368 Sum_probs=162.7
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------i~G~~ 222 (562)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+++|+|.+. +++|+|. ++|.+
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCch
Confidence 5777772 1236999999 599999999999999999999999999643 5589996 88887
Q ss_pred CCh---hcc---CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 ~~~---~~~---~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+.. ..+ ..++|++|+..+++. ++.+++.+.. .....+..+.++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 642 111 247999999888884 8888887642 1122345678899999998765543 4689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
|||||||++|||+|+.+|+++||||||++||+.++..+.+.|++++++++|||++||++. .+..+||+|++| +|++++
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 466689999999 566766
Q ss_pred ec
Q 008534 377 FG 378 (562)
Q Consensus 377 ~G 378 (562)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 54
No 345
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=289.46 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=167.9
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh---cc-CcEEEEccCCC--CC
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LK-SKIGFVTQDDV--LF 241 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~---~~-~~igyV~Q~~~--l~ 241 (562)
.++++|+++|++|..|+++.|+|.||||||||+++|+|.+. +++|+|.+||.++++. .| ..++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46789999999999999999999999999999999999764 5699999999999742 12 34788999985 69
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHH---HHHHHHHHHHHHc--CCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
+.|||.||+.++......++++.. .+.+...+-++.+ ||++..++.+| -|||||||-|+++.|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 999999999988653222223322 2223333444444 66777777664 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|+|||-|++|||.++..|++.-.++.++ +.|.+||||.+.. ...+-+|.++|++|+||.+=+
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEEEEeCCeEEEEcc
Confidence 9999999999999999999999998654 7899999999765 678999999999999998643
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.4e-36 Score=337.31 Aligned_cols=205 Identities=26% Similarity=0.437 Sum_probs=168.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 369999999998 24579999999999999999999999999999999999653 56899998 4332
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.|||++|++ .+++.+||.||+.++.... ... .....+.+++..+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1134577889999985 344544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc-CCeEEE-ecChHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLY-FGKASEA 383 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~-~G~iv~-~G~~~el 383 (562)
|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+|||+.. .+..+||+|++|+ +|+++. .|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 4678899999997 799854 5666554
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.1e-36 Score=276.48 Aligned_cols=144 Identities=33% Similarity=0.552 Sum_probs=130.1
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
++++|+++.|. +.++|+++||++++||+++|+||||||||||+++|+|... +.+|+|.++|. +
T Consensus 1 l~~~~l~~~~~--------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTYG--------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEEC--------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 46899999882 3469999999999999999999999999999999999543 56899999985 4
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
.++|++| ||+||+||++||||
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+.+|+++||||||+|||+.++..+.+.|+++ ++|+|++||++. .+...||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999886 479999999975 4667899999999985
No 348
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.9e-35 Score=286.80 Aligned_cols=222 Identities=23% Similarity=0.319 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeecc----------------cCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 008534 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~ 212 (562)
.|+++||++.|.... ........+|+||||++++||.++|+|+||||||||||+|+|.+ . |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~-Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-K-PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-C-CC
Confidence 578889988876431 01123457999999999999999999999999999999999954 3 56
Q ss_pred ccEEEECCEeCChhccCcEEEEcc-CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 213 ~G~I~i~G~~~~~~~~~~igyV~Q-~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
+|+|.++|+-. ++.. .--+-|.+|.+||+.+-..+. ++++++.+++++++++--+|.+..|.+
T Consensus 81 ~G~v~v~G~v~---------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~P---- 144 (249)
T COG1134 81 SGKVKVTGKVA---------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQP---- 144 (249)
T ss_pred CceEEEcceEe---------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCc----
Confidence 89999999742 1111 112345799999999876543 467888999999999988999888875
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++.+|-||+-|+++|.|...+|+|||+||..+-.|+.-+++-.+.++++.++++|||++||++. .+.++||++++|++
T Consensus 145 -vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 145 -VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred -hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 4799999999999999999999999999999999999999999999999878899999999976 58899999999999
Q ss_pred CeEEEecChHHHHHHHHhc
Q 008534 372 GSLLYFGKASEAMAYFSSI 390 (562)
Q Consensus 372 G~iv~~G~~~el~~~f~~~ 390 (562)
|++++.|.+++++++|...
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999998764
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-35 Score=362.25 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.++++|++|.|. ...+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999982 123579999999999999999999999999999999999543 4689999987
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH---HHHHcC-CCccccccccCcccCCCChhHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.|+||+|++.+|+ .||+|||.|+.. ..++..+ ++.+ +.+.++ +++..+|.+|.. +.+|||||||||
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQ-QVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHH-HHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999986 699999998632 1122211 1111 122232 355667888765 567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l--~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+|||||+.+|+|+|||||||+||+.++..+.+.+.+. ..+++|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2347999999999864 45699999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=334.77 Aligned_cols=208 Identities=27% Similarity=0.435 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|.+. +++|+|.++|..
T Consensus 1 ~i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC------
Confidence 37899999998 35679999999999999999999999999999999999543 568999998742
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhh--CC----------C------------CCccHHHHHHHHHHHHHHcCCC-cc
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALL--RL----------P------------NTLTKQQKEKRAIDVINELGLE-RC 283 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~--~~----------~------------~~~~~~~~~~~v~~~l~~lgL~-~~ 283 (562)
.|+|++|++..+. .|+.+++.-.... .. . ........+.++.++++.+|+. +.
T Consensus 65 -~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~ 142 (638)
T PRK10636 65 -QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142 (638)
T ss_pred -EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh
Confidence 3899998754443 4665554311000 00 0 0000012245678899999996 34
Q ss_pred ccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||+.. .+...|
T Consensus 143 ~~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~ 213 (638)
T PRK10636 143 LERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIV 213 (638)
T ss_pred hcCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhc
Confidence 5554 4689999999999999999999999999999999999999999998875 569999999965 467899
Q ss_pred CEEEEEcCCeEE-EecChHHH
Q 008534 364 DKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 364 D~i~vL~~G~iv-~~G~~~el 383 (562)
|+|++|++|+++ +.|+.+..
T Consensus 214 d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CEEEEEeCCEEEEecCCHHHH
Confidence 999999999996 67876544
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.4e-35 Score=334.57 Aligned_cols=207 Identities=21% Similarity=0.368 Sum_probs=165.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.|. ..+.+|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4799999999982 13469999999999999999999999999999999999653 56899998752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..|||++|++. +.+++.+|..+......+ ... ++++.++++.+++.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 36999999863 345676665432211111 111 345778899999973 3443 357899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el~~ 385 (562)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+..+||++++|++|+++ +.|+.++..+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999888765 34 9999999975 467789999999999998 7888876544
Q ss_pred H
Q 008534 386 Y 386 (562)
Q Consensus 386 ~ 386 (562)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-35 Score=270.79 Aligned_cols=192 Identities=30% Similarity=0.488 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~-- 225 (562)
++.++||+.+. ++.-.|-|||++|.+||++-||||||||||||+..+.|.+... ..+|++++|++.+..
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 47789998754 3667999999999999999999999999999999999976432 468999999998863
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..+++||++|||+.+||+++|.+||.|+. |..+..+.++..+...+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 45789999999999999999999999974 4455566777788999999999877665 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCCh
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSS 357 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~ 357 (562)
+-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|++|||..+
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999999999998887654 3459999999999654
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.7e-35 Score=280.87 Aligned_cols=158 Identities=27% Similarity=0.393 Sum_probs=132.3
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
..+++|+|+||+|++|++++|+|||||||||||++|.+ .+|+|.++|.. ....++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~-~~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFL-PKFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCcc-cccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999963 27999998873 2222445888887
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~--P~iLlLDEPTs 324 (562)
.++++.++|... .+. .++.||||||||++|||||+.+ |++|||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 135666777642 343 4578999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+||+.++..+.+.|+++.+.|+|||++||++.. + ..||++++|++|..
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999999997779999999999754 4 67999999966543
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.6e-35 Score=280.48 Aligned_cols=153 Identities=27% Similarity=0.422 Sum_probs=132.6
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig 232 (562)
.||+++| +++.+++++ ++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 346789985 9999999999999999999999999999653 568999999863 78
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~ 312 (562)
|++|++. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEecCCChHHHhcCCEEEEEcCCeEEEe--cChH
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKAS 381 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~~ 381 (562)
+|+++||||||++||+.++..+.+.|+++++++ .|||++||++. .+..+||++++|+++-.++. |.|.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999999999999999997665 89999999975 46678999999998766544 5443
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.5e-35 Score=354.34 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+|+. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 5689999998 39999999999985 99999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
|.|+.... ........+...+.+.++.+ ++..+|.+|.. +..|||||||||+|||||+.+|+|+||||||++||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874211 00000000111122233333 44556777765 5679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 330 ~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
++..+++. +..+. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999984 66665 48999999999864 35699999999999999999998863
No 356
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9.6e-35 Score=328.71 Aligned_cols=207 Identities=24% Similarity=0.382 Sum_probs=161.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++| +++.+|+||||+|++|++++|+|||||||||||++|+|... +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 24679999999999999999999999999999999999543 568999998732
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------h--CCCC------------------CccHHHHHHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (562)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665421100 0 0000 00001124567888999
Q ss_pred cCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 278 lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+|+.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||++.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99862 33 45789999999999999999999999999999999999999999999887 359999999975
Q ss_pred HHHhcCCEEEEEcCCeEE-EecChHHH
Q 008534 358 RLFHKFDKLILLGKGSLL-YFGKASEA 383 (562)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~el 383 (562)
.+...||+|++|++|+++ +.|+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 467889999999999997 56877653
No 357
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-34 Score=271.88 Aligned_cols=226 Identities=22% Similarity=0.460 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeec-ccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 149 YLKFTDVTYKVILK-GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~-~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.|+++|+++.+... +...+....+++.|||+++.|+.+||+|.||||||||.|+|+|.+. |++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 47788888766321 1112234569999999999999999999999999999999999653 569999999998742
Q ss_pred -hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhH
Q 008534 226 -SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -~~~-~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (562)
..| ++|-++||||+ +-|.+.+..-|.....+ ......+.+.+++.+-++.+||- +.++- +++-||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan~-----~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHANY-----YPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCcccccc-----chhhcCchh
Confidence 233 57999999985 66777777777665543 34566788888999999999984 44443 567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||++||||+.+|+|+|.||..++||...+.++++.+.++.++ |.+-|.++.++. .+..++|+|+||++|++|+.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999754 999999999876 4778999999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 98875
No 358
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.9e-35 Score=339.17 Aligned_cols=223 Identities=24% Similarity=0.435 Sum_probs=200.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..+..+|+++.|.. ..+ +++++|+.|++||+.+++|||||||||++++|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 35889999998831 112 999999999999999999999999999999999954 3668999999998863
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 ---~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
..++.+||+||++.+++.+|.+|++.+.++++ ++++.+..+.++.+++.++|.+..++.+ +.+|||+|+
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 4566667777999999999999988865 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|+++|.||+.+|++++|||||+|+||.+++.++++++++.++|+.||++||-++ +...+|||+.+|.+|++...|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHH
Confidence 999999999999999999999999999999999999999988889999999965 5888999999999999999999999
Q ss_pred HHHHHH
Q 008534 383 AMAYFS 388 (562)
Q Consensus 383 l~~~f~ 388 (562)
+..+|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 987775
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-34 Score=269.13 Aligned_cols=152 Identities=37% Similarity=0.721 Sum_probs=135.6
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
++|+++.|. .+.+|+++|++|++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~~--------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRYG--------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEeC--------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 688999872 3479999999999999999999999999999999999653 468999999987643 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899988 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|+|+.+|++++|||||+|||+.++..+.+.|+++.+.++|+|++||++.. +...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~-~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL-AELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999987767999999999754 667789999999875
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.7e-34 Score=333.46 Aligned_cols=208 Identities=24% Similarity=0.398 Sum_probs=174.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|.+++|.. ....+.|+||||+|++|+++||+||-|||||+||.+|.|.+. ..+|.|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999842 234459999999999999999999999999999999999764 56899999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGq 300 (562)
++||+|.|.+++ .||+|||.|+... .+ ++.+++++... |+.+-.|.||++++ +|||||
T Consensus 584 ---iaYv~Q~pWI~n-gTvreNILFG~~~------d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN-GTVRENILFGSPY------DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhC-CcHHHhhhcCccc------cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhH
Confidence 999999999997 5999999998532 12 23333333332 35566788887765 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+||||+.++++|++||.|.|++|......|.+..-...-+++|+|++||+.. ....||.|++|++|+|++.|++
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999999988665544445899999999865 4688999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+|+++
T Consensus 727 ~el~~ 731 (1381)
T KOG0054|consen 727 EELLK 731 (1381)
T ss_pred HHHHh
Confidence 99983
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.6e-34 Score=317.85 Aligned_cols=188 Identities=28% Similarity=0.386 Sum_probs=154.3
Q ss_pred EEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEE-----------ECCEeC
Q 008534 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHPY 223 (562)
Q Consensus 155 vs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~-----------i~G~~~ 223 (562)
++++|. ....+|++++ .+++|++++|+||||||||||+|+|+|.+. +.+|+|. ++|.++
T Consensus 79 ~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 79 PVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred ceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHH
Confidence 666761 2246999999 999999999999999999999999999653 4589997 999887
Q ss_pred Chh------ccCcEEEEccC----CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 224 SKS------LKSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 224 ~~~------~~~~igyV~Q~----~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
... .+.++++++|. +.+|. .||+|++.+. +...++.++++.++|.+..++. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~-----~ 210 (590)
T PRK13409 149 QNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRD-----I 210 (590)
T ss_pred HHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----h
Confidence 431 12335655554 44443 3999998741 1234678899999998776665 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..+||+|++|+++
T Consensus 211 ~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999988 999999999976 477889999999873
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.6e-33 Score=341.85 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.++ +.|+||+|++.+|+ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999653 458999863 46999999999985 69999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
||.|+.... .....+..+...+++.++.+ ++..++.+|. .+..|||||||||+|||||+.+|+||||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000001111233344444 3344566654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++++
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999754 46799999999999999999998753
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=5.9e-33 Score=304.70 Aligned_cols=207 Identities=29% Similarity=0.451 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++|+++.| +.+++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+-
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 47889999999999999999999999999999999999653 56899987542
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCC--CCCccH-------------------------HHHHHHHHHHHHHcCCC
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRL--PNTLTK-------------------------QQKEKRAIDVINELGLE 281 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~--~~~~~~-------------------------~~~~~~v~~~l~~lgL~ 281 (562)
-+|+|++|++.+.+..||.+.+.-+..... ...... -..+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 259999999999988899998876532100 000000 01135667788888887
Q ss_pred ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh
Q 008534 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (562)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~ 361 (562)
+. ++. +.+||||||.||+||+||+.+|+||||||||++||..+..-+-+.|++. .| |+|+|||| ..-+-.
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 554 4689999999999999999999999999999999999999998888854 46 99999999 555778
Q ss_pred cCCEEEEEcCCeE-EEecChHH
Q 008534 362 KFDKLILLGKGSL-LYFGKASE 382 (562)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~e 382 (562)
.|++|+-++.|++ .|.|..+.
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HhhheEEecCCceeEecCCHHH
Confidence 9999999999976 56666544
No 364
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.1e-33 Score=318.53 Aligned_cols=218 Identities=22% Similarity=0.286 Sum_probs=156.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEe---
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHP--- 222 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~--- 222 (562)
...|+++||+++| +++.+|+|+||+|++|+++||+|||||||||||++|+|+... .+.+|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3479999999998 245699999999999999999999999999999999985421 2346888754432
Q ss_pred --CCh-------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC---------------ccHHHHHHHHH
Q 008534 223 --YSK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---------------LTKQQKEKRAI 272 (562)
Q Consensus 223 --~~~-------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~---------------~~~~~~~~~v~ 272 (562)
.+. .+++.++|++|++.+... ++.++.........+.. ......++++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 110 012336677776543221 22222111000000000 00012344566
Q ss_pred HHHHHcCCC-ccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEE
Q 008534 273 DVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (562)
Q Consensus 273 ~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~ 351 (562)
+++..+|+. +..++ .+.+|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 778888885 23343 34689999999999999999999999999999999999999999999876 6799999
Q ss_pred ecCCChHHHhcCCEEEEEcCCeEE-EecChHH
Q 008534 352 IHQPSSRLFHKFDKLILLGKGSLL-YFGKASE 382 (562)
Q Consensus 352 tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~e 382 (562)
||+.. .+...||+|++|++|+++ +.|+.++
T Consensus 398 sHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 398 SHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99965 467789999999999996 6777654
No 365
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=259.03 Aligned_cols=214 Identities=29% Similarity=0.484 Sum_probs=169.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~- 224 (562)
.+++.++|+.| +.....+||||.+.|||+++|+|.|||||||||+||++++. ++.|+|.|.-. +..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58899999988 34457899999999999999999999999999999999875 56899998643 221
Q ss_pred ----h-----hccCcEEEEccCCC--CCCCCC----HHHHHH-HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 008534 225 ----K-----SLKSKIGFVTQDDV--LFPHLT----VKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (562)
Q Consensus 225 ----~-----~~~~~igyV~Q~~~--l~~~lT----V~enl~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (562)
+ -+|...|||.|+|. +-...+ |-|-+. .+.+ ......+.+.++++++.++... +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456899999974 322223 333332 1111 1223455677899988776421 2
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
+..++.+||||+||+.|||.|++.|+++|+||||-|||...+..+++.++.+..+ |..++++|||+.- +--++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 3457899999999999999999999999999999999999999999999999765 9999999999753 445799999
Q ss_pred EEcCCeEEEecChHHHH
Q 008534 368 LLGKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL~~G~iv~~G~~~el~ 384 (562)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999887765
No 366
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=258.04 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=159.9
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---~ 226 (562)
++.+|+++. +.++.++.++||++.+||++-|.|||||||||||++|+|.+. +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 566777664 246789999999999999999999999999999999999654 568999999998863 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+++.+-|+--.+-+=+.+||.|||.|....... .....+.+.++.+||....|.++ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 445677887788888899999999998765321 12346788999999998888765 5899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
||-+++.+++.||||||++||......+-..+..-+.+|-.||.+|||+..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999998877788899999999864
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=2.5e-31 Score=264.29 Aligned_cols=190 Identities=23% Similarity=0.376 Sum_probs=135.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCCccEEEEC------------CEeCCh--hcc-CcEE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKIG 232 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl-~~L~G~l~~~~~~G~I~i~------------G~~~~~--~~~-~~ig 232 (562)
+..+|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 56799999999999999999999999999996 44431 1221110 000000 111 2244
Q ss_pred EEccCCC--CCCCCCHH---HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~--l~~~lTV~---enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+..|++. +.+..+|. +...+...+. .......+ .+.++.++|.+ ..+. ++.+|||||||||+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~l 148 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIRL 148 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHHH
Confidence 4444432 23444544 2222211111 11112222 46789999975 2443 457899999999999
Q ss_pred HHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEec
Q 008534 307 GNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFG 378 (562)
Q Consensus 307 AraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G 378 (562)
||||+.+| ++|||||||+|||+.++..+.+.|+++++.|.|||++||++.. + ..||+|++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~-~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT-I-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH-H-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 5999999999999999999999999998779999999999753 4 689999999 999999987
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.7e-32 Score=250.39 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe--CC-
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~--~~- 224 (562)
..|..+||++++.-.. ..+-.-++|+||||+++.||++++=|||||||||||++|.|.+. +++|+|++.-.. +.
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhh
Confidence 3588899988775321 11224579999999999999999999999999999999998543 468999985432 21
Q ss_pred -----h---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 225 -----K---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 225 -----~---~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
. .. ++-||||.|.-...|..+..|.+.-....+ ++..+....++.+++.++++++....+ .+.+
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1 12 456999999988888888888777655333 566777788899999999998765543 4678
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+||||+|||.|||.++.+-+||+|||||++||..++.-++++|++-+..|..+|=|-|| .+.-...|||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999988889999999999 4444568999998753
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=2e-31 Score=243.02 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=116.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
|+|||++|++|++++|+||||||||||+++|+|... +.+|.|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999543 468999999999864 35788999999999999999999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs 324 (562)
| ....++.++++.+++.+..++.++.. ...|||||||||+|||||+.+|++|||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 12345778899999888777776543 47899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-30 Score=264.10 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=153.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CCccEEEECCEeCChhccC-
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-----G~l~~----~----------~~~G~I~i~G~~~~~~~~~- 229 (562)
..-|+|||++|+.|.+++|.|+||||||||++.+. ..+.. + ...--|.+|..|+.+..|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998652 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC
Q 008534 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (562)
Q Consensus 230 -----------------------------~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (562)
.+.|..++...+..+||.|++.|..... ...++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 1456666666667899999999875331 12356778999999
Q ss_pred Cc-cccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 281 ~~-~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+ ..+. .+..||||||||++|||+|+.+ |+++||||||+|||+.....+++.|+++.+.|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2343 3578999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred hHHHhcCCEEEEE------cCCeEEEecCh
Q 008534 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (562)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (562)
. ...||++++| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=278.10 Aligned_cols=205 Identities=28% Similarity=0.440 Sum_probs=166.5
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
...++++|+++.|. +.+.+++++||.|.+|+.+||+||||+|||||||+|+|.+. +.+|.|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34799999999982 23689999999999999999999999999999999999553 44899876532
Q ss_pred ccCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 227 ~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
-+|||..|+. .+++..|+.|++.-.. +. ..+..+...+..|+++...- ...+..||||||.||.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 2499999986 5557789999987542 11 11556788999999974321 2345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe-cChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~-G~~~el~ 384 (562)
+|+.++.+|.+|||||||+.||..+...+.+.|.++ .-|||+||||.. .+-..|++|+++.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999999876 349999999954 57789999999998 66555 7776654
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.4e-29 Score=268.10 Aligned_cols=213 Identities=23% Similarity=0.443 Sum_probs=177.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
++.++++|++.. ..++||||++++||+++|-|-=|||+|=|+++|.|. .+..+|+|.+||+++..
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 346788877642 268999999999999999999999999999999993 34568999999998752
Q ss_pred ----hccCcEEEEccC---CCCCCCCCHHHHHHHHHhhCCC-C-CccHHHHHHHHHHHHHHcCCCc-cccccccCcccCC
Q 008534 226 ----SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (562)
Q Consensus 226 ----~~~~~igyV~Q~---~~l~~~lTV~enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~ 295 (562)
..+..|+|||.| .-++..++|.+|+.++...+.. . -+......+.+.++++.+++.. ..+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 356789999988 4588899999999988322211 1 2455556667888999998852 2223 4568
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv 375 (562)
||||.+|||.|||.|..+|+||||||||.|.|.-+..+|++.|++++++|++||++|.++. ++..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999999999999965 688999999999999998
Q ss_pred EecC
Q 008534 376 YFGK 379 (562)
Q Consensus 376 ~~G~ 379 (562)
..=+
T Consensus 481 ~e~~ 484 (500)
T COG1129 481 GELD 484 (500)
T ss_pred EEec
Confidence 7543
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=2.1e-29 Score=245.51 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=129.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCCccEEEECCEeCCh-hccCcEEEEccCCCCCCCCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-------~~~~G~I~i~G~~~~~-~~~~~igyV~Q~~~l~~~lT 245 (562)
+++++++.+| +++|+||||||||||+++|+|.+.. ....|++.++|.+... ..+++|+||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 9999999999999999999985421 1123568788876532 2356799999998766
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDE 321 (562)
|+. . . .+++.++++. .+..++ .+..||||||||++||++|+ .+|+++||||
T Consensus 89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E-----e----hhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 0 2345566665 333333 35789999999999999997 4679999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||+|||+.....+.+.|+++++ +.|||++||++.. .+.||+++.|..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 9999999999999999999865 7899999999753 478999999864
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=3.4e-29 Score=233.40 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=172.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++++||... .-|-.+|+.+..||++-+||||||||||||-.++|.+ +-+|+|.++|.++..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4667777653 2377899999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
++.++-+|..|+..-...|.|...+.+. .| .......+.++...++|.+...+. +..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----qP----~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----QP----DKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----Cc----hHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 4566678998875543358999988864 22 345556678888889998765543 478999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~-----~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
-+|...+. || ++|+||||.++||...+..+-..|.+++..|.+|||+.||++- ..+.+|++.+|+.|+++..
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99988764 44 7999999999999999999999999999999999999999875 5688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999875
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=3.1e-29 Score=247.09 Aligned_cols=188 Identities=14% Similarity=0.188 Sum_probs=138.3
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~ 229 (562)
|+++|+. .| .++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++
T Consensus 6 l~l~nfk-~~--------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~ 59 (212)
T cd03274 6 LVLENFK-SY--------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQK 59 (212)
T ss_pred EEEECcc-cC--------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhh
Confidence 5666664 33 35679999987 8999999999999999999982 2 22222111235
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCC-----CCccHHHHHH--HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
++++++|+..+++.+|+++++.+....... .+........ ...++++.++|++..++. +..||+||||
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~ 134 (212)
T cd03274 60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKT 134 (212)
T ss_pred hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHH
Confidence 689999999889989999987765432100 0111100000 013455667777766664 3589999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 303 RVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 303 Rv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|++||+|++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||+|++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 67899999985 46789999999974
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.6e-27 Score=238.51 Aligned_cols=185 Identities=16% Similarity=0.316 Sum_probs=130.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCCcc--------EEEECCEe---
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP--- 222 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l---------------~~~~~~G--------~I~i~G~~--- 222 (562)
++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~~ 87 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNRF 87 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCcc
Confidence 556888887 7899999999999999999998321 11 1134 55665532
Q ss_pred -CC---hhccCcEEEEccCCCCCC-CCCHHHHHHHHHhhCCCCCccH-HHHHHHHHHHHHHcCCCccccccccCcccCCC
Q 008534 223 -YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (562)
Q Consensus 223 -~~---~~~~~~igyV~Q~~~l~~-~lTV~enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (562)
+. ...++.++|++|+..+++ ..|..|...+............ .....++.++ +++.+..+. .+..|
T Consensus 88 ~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l---~~l~~~~~~-----~~~~l 159 (243)
T cd03272 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSL---TNMKQDEQQ-----EMQQL 159 (243)
T ss_pred CCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHh---hhccccccc-----ccccc
Confidence 11 124567999999888876 4577776665544322211000 0001122222 334333333 35689
Q ss_pred ChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 297 SGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 297 SGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||||||++|||+|+. +|++|||||||+|||+.++..+++.|+++.+ +.|||+++|++ ++.+.||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 78888888884 3678999999985
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=4.9e-27 Score=231.31 Aligned_cols=192 Identities=18% Similarity=0.177 Sum_probs=132.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE-e-CC-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-P-YS- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~-~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~-~-~~- 224 (562)
.|+++|+. .| .+. ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+.. . +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47778776 44 122 66677644 589999999999999999999997555333 233333210 0 11
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 225 ~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
......|++++|++.... ++..+. .++.+...+.+ .+...++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 123456999999874311 111111 12222211111 122223333333 34578999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 305 ~IAraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|||||+. +|++|||||||++||+.+...+.+.|+++++++.|||++||++. .+...||+++++++|-
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877899999999975 4677899999999874
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1e-27 Score=241.86 Aligned_cols=183 Identities=17% Similarity=0.234 Sum_probs=135.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE-eCCh------hccCcEEEEccCC---------CCCCCCCH
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~-~~~~------~~~~~igyV~Q~~---------~l~~~lTV 246 (562)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+..|++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 34999999999999999999998653 233567887776 3211 1234799999985 34567899
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc---------------cccCcccCCCChhHHHHHHHHHHHh
Q 008534 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
.+++.++...+.... .+....+++.++++.+++...... ...+..+..||||||||++||++|+
T Consensus 104 ~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 104 TRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 998876532111000 112234678889999998611000 0112356789999999999999998
Q ss_pred ----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 312 ----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 312 ----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.+|++++|||||++||+.....+.+.|+++. +|.|+|++||++ ++.+.||+++-+.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999986 488999999994 4678899998775
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=5.2e-26 Score=273.95 Aligned_cols=138 Identities=25% Similarity=0.368 Sum_probs=111.6
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHh---hCCC
Q 008534 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (562)
Q Consensus 240 l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl---~~P~ 315 (562)
.+...||.|+|.++..-.........+..+++ ++++.+||.+. .+. .+.+|||||||||+||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999887542111111223344455 57888999764 444 34689999999999999998 5999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCeEEEecChHHHHH
Q 008534 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (562)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~el~~ 385 (562)
+|||||||+|||+.+...+++.|+++++.|.|||+++|++.. + ..||+|++|. +|++++.|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998889999999999763 4 8999999996 799999999998753
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=1.1e-26 Score=227.65 Aligned_cols=165 Identities=17% Similarity=0.266 Sum_probs=124.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCCccEEEECCEeCC-hhccCcEEEEccCC-----CCCCCC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHL 244 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~----G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~-----~l~~~l 244 (562)
..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 344667788 99999999999999999995 7543 33455542222222 23356799999998 445556
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH------HHHHHHHhhCCCEEE
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLF 318 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR------v~IAraLl~~P~iLl 318 (562)
|+.||+.+.. .. .+.+.+ + ..++.||+||+|| ++|||+|+.+|++++
T Consensus 92 ~~~~~~~~~~---------~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFCH---------QG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeeec---------hH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8888886531 11 122222 2 2346899999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 319 LDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 319 LDEPTsgLD~~~~~-~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
|||||++||+..+. .+.+.|+++.++ |.|||++||++. ....||++++|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999766 889999999965 3567999999964
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.1e-27 Score=242.33 Aligned_cols=204 Identities=25% Similarity=0.313 Sum_probs=162.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||.|.|.. ...-+..||++|+.||++-|+|.||||||||+++|.|. +. |.+|+|++||+|++.
T Consensus 322 ~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 322 TLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred ceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCCH
Confidence 6999999999832 22568999999999999999999999999999999995 44 458999999999963
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
++|+-++-||-|..+|+.+-- ++.. .....++..++.+.|.+...-.=|+-..-.||.|||||+
T Consensus 393 edYR~LfSavFsDyhLF~~ll~------------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRl 457 (546)
T COG4615 393 EDYRKLFSAVFSDYHLFDQLLG------------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRL 457 (546)
T ss_pred HHHHHHHHHHhhhHhhhHhhhC------------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHH
Confidence 578888889999999975211 1111 112345566777666543222112222346999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
++-.||+-+-+|+++||=-+--||.-++.+.+.+--+ ++.|+||+.||||-. -|..+||++.+.+|++++.-
T Consensus 458 All~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999998877654 567999999999943 58899999999999998864
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=236.02 Aligned_cols=222 Identities=22% Similarity=0.372 Sum_probs=185.4
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-C-
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S- 224 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~-~- 224 (562)
.+.|+++|++..- ..+.+.+++|||+|+.||+++|.|-.|-|-+-|+.+|+|.. . +.+|+|.++|+++ .
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~-~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-K-PASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-c-cCCceEEECCEecccc
Confidence 4579999999752 22357899999999999999999999999999999999954 3 3359999999996 2
Q ss_pred --h--hccCcEEEEccCC---CCCCCCCHHHHHHHHHhhCCC----CCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 225 --K--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 225 --~--~~~~~igyV~Q~~---~l~~~lTV~enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
. ..+..++|||+|. -+.+.+|+.||+.+....+.| .-+......+.+.++++.++....-. ....
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 1 2345699999986 467789999999987643211 12455667778899999998863211 1235
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+.||||++||+-+||+|.++|++|++.+||.|||..+...|.+.|.++++.|+.|++++-+++ +++.+||||.||.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 789999999999999999999999999999999999999999999999999999999999976 5899999999999999
Q ss_pred EEEecChHH
Q 008534 374 LLYFGKASE 382 (562)
Q Consensus 374 iv~~G~~~e 382 (562)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999887765
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=5.7e-26 Score=249.12 Aligned_cols=196 Identities=28% Similarity=0.456 Sum_probs=155.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+..- ......|++.++.|++|+.+.|.||||||||||+|+|+|. . |--+|+|.+- .
T Consensus 391 ~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P-------~ 454 (604)
T COG4178 391 HGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP-------A 454 (604)
T ss_pred ceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------C
Confidence 479999999864 1345899999999999999999999999999999999995 4 2235776543 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc-CcccCCCChhHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVCI 306 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGqrqRv~I 306 (562)
-..+-|+||.|.+... |.+|-|.|+.... . -.++.+.++|.++||++..+..-. ++.-+.||+||||||++
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlaf 526 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAP---D----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAF 526 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCC---C----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHH
Confidence 2348899999998765 9999999864211 1 234457788888999876655322 12345699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
||.|+++|++++|||.|++||+.++..+++.|++-. .+.|||-|.|++. +..+.++.+-+.
T Consensus 527 ARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 999999999999999999999999999999998743 3799999999965 456666655543
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=5.4e-25 Score=255.38 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=105.9
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHHHHHHhhCC---CEEEE
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P---~iLlL 319 (562)
|||.|++.|..... + ..+..+.++.+||.. ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78889888864321 1 123457889999975 2333 35689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
||||+|||+.....+++.|+++.+.|.|||+++|++.. ...||+|++| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998789999999999753 4679999999 7999999999998753
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=4e-25 Score=235.44 Aligned_cols=215 Identities=24% Similarity=0.351 Sum_probs=144.8
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..+.++|+++.| .++.+++|++|++.+|+.++|+|||||||||+|++|.|+..+.+..=.++.-...+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 368999999987 467899999999999999999999999999999999998753232222222222221100
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHh-hCC----------------CCCccHHHHHHHHHHHHHHcCCC-cccccccc
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL----------------PNTLTKQQKEKRAIDVINELGLE-RCQDTMIG 289 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg 289 (562)
...+-+|.+. .-..+.-+.+... +.. ...+..+..+.++..++..+|.. +..+.
T Consensus 146 ~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k--- 217 (614)
T KOG0927|consen 146 KQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK--- 217 (614)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH---
Confidence 0001111100 0011111111100 000 00112233444566666666653 33333
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
.+.+||||+|.|++|||+|+.+|++|+|||||++||+.+..-+-+.|.+..+ .++|+++|.-+ .+-..|.+|+-|
T Consensus 218 --~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QD-fln~vCT~Ii~l 292 (614)
T KOG0927|consen 218 --KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQD-FLNGVCTNIIHL 292 (614)
T ss_pred --HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchh-hhhhHhhhhhee
Confidence 4578999999999999999999999999999999999999888888876532 28999999854 477899999999
Q ss_pred cCCe-EEEecChHHH
Q 008534 370 GKGS-LLYFGKASEA 383 (562)
Q Consensus 370 ~~G~-iv~~G~~~el 383 (562)
++++ +.|.|+.+..
T Consensus 293 ~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQY 307 (614)
T ss_pred cccceeeecCCHHHH
Confidence 9999 6677776654
No 386
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.3e-25 Score=213.02 Aligned_cols=229 Identities=21% Similarity=0.330 Sum_probs=174.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CCccEEEECCEeCC---
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS--- 224 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~--~~~G~I~i~G~~~~--- 224 (562)
|.++|++..+.. +.+...++++||+++..||+-++||.||||||-..|+|+|...+. .+.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 567788777632 334567999999999999999999999999999999999965432 11233455555542
Q ss_pred -hh----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhhCCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 225 -KS----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 225 -~~----~~~~igyV~Q~~~--l~~~lTV~enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
+. .-+.|+++||+|. |-|.-+|...|.-.......++. .-..++.++.+++..+|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 11 2245889999985 44444443333222111111110 0123456788999999999877643 56788
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|--||-|+|.||.|++.+|++||.||||+++||.++.+|..+|.++.+ +|.||++++||+.. +-+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 48999999999764 778999999999999
Q ss_pred EEEecChHHHHH
Q 008534 374 LLYFGKASEAMA 385 (562)
Q Consensus 374 iv~~G~~~el~~ 385 (562)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=2.9e-24 Score=248.82 Aligned_cols=124 Identities=27% Similarity=0.464 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhh---CCCEEEE
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLFL 319 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~---~P~iLlL 319 (562)
|||.|.+.|..... . ..+..++++.+||... .+. .+.+|||||+|||.||++|+. +|+++||
T Consensus 790 ~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 790 MTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 56677766654321 0 1134567888898642 333 357899999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el 383 (562)
||||+|||+.....+++.|+++.+.|.|||+++|++.. + ..||+|++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999998789999999999753 4 679999999 79999999998875
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=4.2e-25 Score=235.33 Aligned_cols=202 Identities=22% Similarity=0.330 Sum_probs=156.6
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
++.+.+.||+|.|. ++..++++++|-|..++.+|+|||||+|||||||++.|.+. +..|.|.-.-
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~------ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS------ 451 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc------
Confidence 45799999999983 12379999999999999999999999999999999999664 4468764322
Q ss_pred ccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 227 LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 227 ~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
..++++..|+. .+--+.++-|++.-.. ++....+.+..++.++||....... ..++||+|||.||
T Consensus 452 -H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 452 -HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRV 518 (614)
T ss_pred -cccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCcccccc----chhhcccccchhH
Confidence 23355555542 3333567777765321 1123445677899999998544432 4579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE-EEecCh
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKA 380 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~ 380 (562)
.+|+.++..|.||+|||||+|||..+...+-+.|.++ .-+||++|||.. .+-+.+++|.+..+|.+ .+.|..
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999998888888775 348999999965 47788999999998865 555654
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=2.1e-23 Score=203.43 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=121.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE--CCEeCCh-----hccCcEEEEccCCCCCCCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i--~G~~~~~-----~~~~~igyV~Q~~~l~~~l 244 (562)
-++++++++.+| +++|+||||||||||+.+|...+ .|.... .|..+.. .....|.+++|+..+++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-- 82 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-- 82 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--
Confidence 346788888888 88999999999999999997422 122111 1221111 11345888888876664
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH----hhCCCEEEEe
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLD 320 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL----l~~P~iLlLD 320 (562)
| . ... .....+.++++. .+..++ .++.||+|||||++||+|| +.+|+++|||
T Consensus 83 ----~--------~---~~~-~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlD 138 (198)
T cd03276 83 ----N--------P---LCV-LSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLD 138 (198)
T ss_pred ----C--------c---CCH-HHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEec
Confidence 1 0 011 113456667765 333443 4578999999999999999 5899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~---g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
|||+|||+.....+.+.|+++.+. +.|||+++|++.. +. .+|+|.+|..++
T Consensus 139 EP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~-~~d~v~~~~~~~ 192 (198)
T cd03276 139 EFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LA-SSDDVKVFRMKD 192 (198)
T ss_pred CcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cc-cccceeEEEecC
Confidence 999999999999999999998653 3689999999765 44 459999998754
No 390
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=1.6e-22 Score=217.09 Aligned_cols=204 Identities=21% Similarity=0.346 Sum_probs=156.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++|++|+..- |..+..+++|+||+|+.|+-+.|.||||||||+|+++|+|. + |..+|.+..-.+.-.
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGGP--- 500 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCCC---
Confidence 479999999863 33356788999999999999999999999999999999984 5 345898875433221
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccc------ccCcccCCCChhHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGqr 301 (562)
+.+-||||.|.+-.. |.||-+.|....-.+ ..+...++++...|+.++|.+..+.. +--.....||+||+
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 458899999987654 999999987321111 11222344566677777666544322 11123356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.++-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999988875 4899999999975 5666788888875
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=1.6e-23 Score=210.92 Aligned_cols=179 Identities=17% Similarity=0.225 Sum_probs=117.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-C-C---------hhccCcEEEEccCCCC-CCCCCHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-S---------KSLKSKIGFVTQDDVL-FPHLTVKE 248 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~-~---------~~~~~~igyV~Q~~~l-~~~lTV~e 248 (562)
.++ +++|+||||||||||+++|++.+. +. .|.+..++.. + . ....-.+.|..|++.. +-..++.+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~~-~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-EK-SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-CC-cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 999999999999999999998654 22 4555443321 0 0 0111123444444321 10112222
Q ss_pred HHH-HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccc---------cccC--------cccCCCChhHHHHHHHHHHH
Q 008534 249 TLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGG--------SFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 249 nl~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~--------~~~~~LSGGqrqRv~IAraL 310 (562)
... |.. . ....+ ...+.++++.+|+...... .+.+ ..+..||||||||++||+++
T Consensus 98 ~~~~~~i--n-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al 170 (247)
T cd03275 98 GSSSYRI--N-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLF 170 (247)
T ss_pred CceEEEE--C-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHH
Confidence 111 110 0 01111 2345678888888532111 1111 12378999999999999999
Q ss_pred hhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 311 IIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 311 l~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||++. +...||++++|..
T Consensus 171 ~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 171 AIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred HHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 875 8999999999999999999999999999877899999999953 5688999999864
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=212.90 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=134.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
-|.-=.++|..||+++++||||-||||++++|+|.+. |++|. .. .-+|+|=||--.--...||.+.|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 3444455667788999999999999999999999664 44675 11 224888888643323579999887
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
-........ .-...++++-|.|++..+..+ .+|||||.|||+||.+|.++++|++||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 554321111 112346777888888777654 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
..+-+.+++...+ ++|.+++-||... +--++||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 7899999999763 444689998874
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.3e-23 Score=218.30 Aligned_cols=203 Identities=23% Similarity=0.283 Sum_probs=143.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|...+++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| .+.++..+.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 367888888887 47889999999999999999999999999999999994 222 233333333
Q ss_pred cCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHH-HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
+. .+++-. ..+-.++.+.+-|.--.. +... ..++....+|..+|..+.... .+.++||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~~------l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEKE------LLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhhh------hhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122221 123333333333321111 1111 223333347888888754332 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE-EEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~el~ 384 (562)
|||||..+|+||||||||+.||..+..-+.+.|..+ +.|+|+|||| +.-+-..|..|+-+++-++ .|.|+.++..
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999999999999999988888875 4799999999 4446678888888887666 5677766543
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.87 E-value=1.1e-21 Score=187.34 Aligned_cols=210 Identities=23% Similarity=0.303 Sum_probs=159.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|++.++.|+|+. ..+++-|+|+.++.|....++|.||||||||||+|+|.-. .-.|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 36999999999942 3489999999999999999999999999999999999533 235899999976421
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 008534 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (562)
Q Consensus 226 -------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (562)
+|.+.+++--+-| +-.++++.+.| |+... ... ++-+.+++.+.++-.. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevp-lq~D~sae~mi-fgV~g-----~dp----~Rre~LI~iLDIdl~W-------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVP-LQGDISAEHMI-FGVGG-----DDP----ERREKLIDILDIDLRW-------R 144 (291)
T ss_pred cccccCceeEeccccccccccccccc-ccccccHHHHH-hhccC-----CCh----hHhhhhhhheeccceE-------E
Confidence 2344444433222 23356766544 44311 111 2334566666654221 2
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
.+.+|-|||+||.|++-|++.-++|+|||-|--||..++..+++.|++-.+ +|.|||..||..+- +..-..+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 367999999999999999999999999999999999999999999998875 48999999998764 6678899999999
Q ss_pred CeEEEecChHHHHH
Q 008534 372 GSLLYFGKASEAMA 385 (562)
Q Consensus 372 G~iv~~G~~~el~~ 385 (562)
|+++..-+.+++.+
T Consensus 224 Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 224 GKLVDNLKYQKIKE 237 (291)
T ss_pred Ceeeeccccchhhh
Confidence 99998655555433
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.7e-21 Score=202.44 Aligned_cols=192 Identities=27% Similarity=0.418 Sum_probs=148.9
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~ 226 (562)
|+.|-+.||+|.|+ +.++.+++++|-|.--..+|||||||.||||||++|.|.+. | ..|+.. +.
T Consensus 584 PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P-~~GE~R-------Kn 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-P-NDGELR-------KN 647 (807)
T ss_pred CCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-C-Ccchhh-------cc
Confidence 56799999999883 36789999999999999999999999999999999999764 3 457543 33
Q ss_pred ccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 227 LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 227 ~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.|-+||+..|+. .|-..-|.-|.|.-... + +. ..+...|-.+||...++|+ .+..||||||-||
T Consensus 648 hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN--l----py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRV 713 (807)
T KOG0066|consen 648 HRLRIGWFDQHANEALNGEETPVEYLQRKFN--L----PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARV 713 (807)
T ss_pred ceeeeechhhhhHHhhccccCHHHHHHHhcC--C----Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHH
Confidence 345699998874 34444577776653322 2 22 2345678889999888885 4678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
++|.--+..|+||||||||++||.++...+-+.|+++ .-.|||++||-.- +.+.--.++|+.+-
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 9999999999999999999999999999998888876 3489999999543 33333455666543
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=4.2e-21 Score=189.39 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred ccCCCChhHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-cEEEEEecCCChHHHhcCC-
Q 008534 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraL----l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~Tvii~tH~~~~~i~~~~D- 364 (562)
.+.+||||||||+.++++| +.+|+++|+||||+|||+.++..+++.|++++++ | .|+|++||++.. +...||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4578999999998877654 4799999999999999999999999999999765 5 589999999754 446665
Q ss_pred -EEEEEcCCe
Q 008534 365 -KLILLGKGS 373 (562)
Q Consensus 365 -~i~vL~~G~ 373 (562)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.8e-21 Score=202.36 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=154.8
Q ss_pred CceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 146 ~~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
.++.+++.+|+|.|. ++ ..+++.++++.++.-..++++|+||+||||+++++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~-----p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYT-----PS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCC-----Cc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 356799999999873 22 2279999999999999999999999999999999998654 3467765543
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
|.+|+|-+|...=+-.+.|-+-- +....+ | +.++ +.+...+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 56799999986543344554432 322222 2 2233 3455678889997422 12235789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+|||+. ..+-..|+.+++.++|++.-
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999988888888865 34899999995 45777999999999999854
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=8e-21 Score=185.35 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=110.0
Q ss_pred eeeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 172 iL~~vs~~i~~Ge-~~alvGpsGsGKSTLl~~L~-G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
-+-++|+++.+|+ +++|+|||||||||||++|+ +.+. ...|. .+...-...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~------~vp~~~~~~~~~~~~~~~~l-------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGL------PIPAAEGSSLPVFENIFADI-------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------CccccccccCcCccEEEEec--------
Confidence 4568999999995 89999999999999999998 1110 00110 00000001234444432111
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+..+..+. ....+|+||||++.|++++ .+|+++|+||||+|||+.
T Consensus 80 -----------------------------g~~~~l~~-----~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~ 124 (200)
T cd03280 80 -----------------------------GDEQSIEQ-----SLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPV 124 (200)
T ss_pred -----------------------------Cchhhhhc-----CcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHH
Confidence 11110111 1246999999999999884 899999999999999999
Q ss_pred HHHHHH-HHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 330 TALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 330 ~~~~i~-~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
....+. ..++.+.+.|.|+|++||+. ++...||++++|++|++++.+
T Consensus 125 ~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 125 EGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 999996 46787777789999999983 467899999999999998874
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=7.9e-20 Score=175.49 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.3
Q ss_pred CChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 296 LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
||||||||++|||+|+ .+|+++++|||+++||+..+..+.+.|+++++.|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999975
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=4.2e-20 Score=193.79 Aligned_cols=170 Identities=32% Similarity=0.495 Sum_probs=128.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-------------h---h-----cc--CcEEEEc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------------K---S-----LK--SKIGFVT 235 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-------------~---~-----~~--~~igyV~ 235 (562)
..++|++++|+||||-||||.+|+|+|.+. |. =|+ +++.|-. . . +| .++-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 357999999999999999999999999765 32 232 2332210 0 0 01 1122333
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~ 315 (562)
--|..+- -+|.|-|.-. ...-..+++++.++|.+..|..+ .+|||||-||++||.+++++++
T Consensus 172 ~iPk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 3344443 3777766522 11235778899999998777654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 316 iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++++|||||-||...+....+.++++++.+++||++.||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999763 4457899999864
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=3.9e-20 Score=180.64 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=107.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.|++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346888887775 79999999999999999999998432 1224444422 136778788999999999
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+.++... ...+ ..++.++++.+++ .+|+++|+||||+|||+
T Consensus 79 ~l~~~~s~------~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGISY------FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccCh------HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 99875311 1222 2456777766542 68999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCcEEEEEecCCChHHHhc--CCEEEEE
Q 008534 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHK--FDKLILL 369 (562)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvii~tH~~~~~i~~~--~D~i~vL 369 (562)
.....+. ..++.+.+.|.|+|++||++.. +... .++|-.+
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 9988775 4678887778999999999753 3322 3445444
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=5.7e-19 Score=213.61 Aligned_cols=199 Identities=24% Similarity=0.377 Sum_probs=143.9
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC--CCCccEEEECCEeCCh--------------hccC-
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLKS- 229 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G----~l~~--~~~~G~I~i~G~~~~~--------------~~~~- 229 (562)
=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|-.|+.+ ..|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997443 1 0100 0123447777666521 0000
Q ss_pred ---------------c---------------EEEEccCCCCCC--------------------------------CCCHH
Q 008534 230 ---------------K---------------IGFVTQDDVLFP--------------------------------HLTVK 247 (562)
Q Consensus 230 ---------------~---------------igyV~Q~~~l~~--------------------------------~lTV~ 247 (562)
. -|++.=+..++| .|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 0 111111111111 35666
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTs 324 (562)
|-+.|... ..+-.+.-+.|..+||... .+| +...+|||||.||+-||..|..+ +.+++|||||.
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl---~LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYL---PLG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCee---eCC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 66665421 1123345567888898643 123 44568999999999999999876 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc------CCeEEEecChHHHHH
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~el~~ 385 (562)
||++.....+++.|++|.+.|.|||+|.|++. +.+.||.|+-|. .|+||+.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999964 567899999984 579999999999864
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=1.3e-19 Score=192.57 Aligned_cols=184 Identities=23% Similarity=0.374 Sum_probs=133.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|.++||-.-- + ....++..++|.|++|--+.|.||||||||+|+++|.|. + |...|...+ | -+
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~---P----~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI---P----RP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec---C----CC
Confidence 47788886542 2 245689999999999999999999999999999999994 4 233443321 1 23
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhC--CCCCccHHHHHHHHHHHHHHcCCCccccccccC----cccCCCChhHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGqrq 302 (562)
.++-|+||.|.+- .-|.+|-+-|..... ..++..+ +....++..+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888887642110 0012222 2344455555555443332220 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-|+|+|+
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 99999999999999999999999999999998888765 4899999999987
No 404
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=2e-18 Score=191.68 Aligned_cols=110 Identities=28% Similarity=0.494 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~ 346 (562)
+..+.|..+||.-. .+| ....+|||||.|||-||..|.... -++||||||+||-.....++++.|.+|...|-
T Consensus 801 rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 44456677888632 233 456789999999999999999887 99999999999999999999999999999999
Q ss_pred EEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 347 TVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 347 Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
|||+|.|.+. +.+.||.|+=| ..|+||+.|+|+++.+
T Consensus 877 TViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 877 TVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999975 67899999998 4589999999999875
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=1.1e-19 Score=180.48 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=115.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~ 247 (562)
.+.+.+|+++++.+|++++|.||||+|||||+++|+ .. .+..++| |||.+...++ +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~------------------~~la~~g~~vpa~~~~~~---~- 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI------------------VLMAQIGCFVPCDSADIP---I- 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH------------------HHHHHhCCCcCcccEEEe---c-
Confidence 457899999999999999999999999999999998 21 1122333 6666543222 0
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCC---
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEP--- 322 (562)
+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 73 -----------------------~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 73 -----------------------VDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred -----------------------cceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 12234445655332 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++.+.+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3344443 47899999996 45788999999999999988764
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.1e-18 Score=178.54 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred CCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
.|||||+||++||++++. +|+++||||||++||+.....+.+.|+++.+ +.|+|++||++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999997664 9999999999999999999999999999864 789999999975 457999999998
Q ss_pred CCe
Q 008534 371 KGS 373 (562)
Q Consensus 371 ~G~ 373 (562)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.79 E-value=6.6e-19 Score=182.91 Aligned_cols=185 Identities=26% Similarity=0.434 Sum_probs=138.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------CCCccEEEECCEeCChhccCcEEEEccCC-CCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLF 241 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~------~~~~G~I~i~G~~~~~~~~~~igyV~Q~~-~l~ 241 (562)
...+|+|||++|+||++++|+|+|||||||+|++|+|.... .|++|.|.+--.. ..+.+|-+. .-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccccccc
Confidence 35799999999999999999999999999999999995321 1346776553221 123445432 223
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeC
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDE 321 (562)
..-|+.|.+.-- +. +-..+.+++.+.||.+.. .-....++||-|||.|+.||.+|...|.+++.||
T Consensus 468 ~~~tilehl~s~-----tG------D~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRSK-----TG------DLNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhhc-----cC------chhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 355777766421 11 112356788899997532 1123457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhc-CCEEEEEcCCeEE
Q 008534 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (562)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (562)
--|.||+.++..+..-|.+++++ |.|++++||++.- +-.+ -|+++++.=|.+.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999864 9999999999753 4444 5999988766543
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=1.2e-18 Score=164.54 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.+++.++|++||++. +...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998655889999999965 457799999985
Q ss_pred C
Q 008534 371 K 371 (562)
Q Consensus 371 ~ 371 (562)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=6.2e-18 Score=196.84 Aligned_cols=136 Identities=23% Similarity=0.418 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHhhCCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
..++|.|.+.|...+..+.. .. -.+...++ +.++.+||.+. .|+ .+.+|||||+|||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl-~~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL-KFLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322110 00 01223344 36778888754 454 35689999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 315 --~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
++|||||||+|||+.....+++.|+++++.|.|||+|+|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999764 4 569999999 9999999999988743
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.1e-19 Score=185.85 Aligned_cols=214 Identities=25% Similarity=0.348 Sum_probs=150.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--- 224 (562)
..|.++|.+.+- .++..+.|-|++|-.|..++||||||-||||||+.|+.|-..-|..=.|++..+.+-
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 358888887764 467899999999999999999999999999999999987432222234444443321
Q ss_pred --------hhccCcEEEEccCCC-----CCCCCCHHHHHHHH-HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC
Q 008534 225 --------KSLKSKIGFVTQDDV-----LFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (562)
Q Consensus 225 --------~~~~~~igyV~Q~~~-----l~~~lTV~enl~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (562)
+.-.++..++-.+.. --...|+.|-+.-. ..++ .+-....++++..+|.-+|++.... +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELr---aiGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELR---AIGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH---HhccccchhHHHHHHhhcCCChhHh----c
Confidence 000111111111111 11245666666422 2222 1112234556778888888875433 2
Q ss_pred cccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
++...+|||-|-||++||||...|-+|.|||||+.||.....-+-+.|..+. +|.+|++||-.. +-..|..|+-|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgF-LD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGF-LDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccch-HHHHHHHHhhhh
Confidence 3456799999999999999999999999999999999999888888888875 599999999654 667899999999
Q ss_pred CCeEE-EecCh
Q 008534 371 KGSLL-YFGKA 380 (562)
Q Consensus 371 ~G~iv-~~G~~ 380 (562)
+-++- |.|+.
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 88774 45654
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.6e-17 Score=193.09 Aligned_cols=134 Identities=24% Similarity=0.415 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhhCCCCCccH------HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC-
Q 008534 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P- 314 (562)
.|||.|.+.|...+..+..... .+...+ .+.+..+||... .+ +.+.+|||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 011112 234566787643 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 315 -~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
.+|||||||+|||+.....+++.|+++.++|.|||+|+|++.. + ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~-i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEET-I-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH-H-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 8999999999999999999999999998889999999999753 4 589999999 899999999998874
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.5e-17 Score=166.29 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=62.5
Q ss_pred cCCCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
..-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++ +. +++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q-~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQ-TFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CC-EEEEeCCch-hccchh
Confidence 3458999999999999985 699999999999999999999999999865 23 455555433 345566
Q ss_pred ---CEEEEEcCCeE
Q 008534 364 ---DKLILLGKGSL 374 (562)
Q Consensus 364 ---D~i~vL~~G~i 374 (562)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=2.2e-18 Score=168.38 Aligned_cols=157 Identities=15% Similarity=0.119 Sum_probs=106.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
..++++.+|++++|+|||||||||||++|++.... ...|.. +. ..+..++|..|....+ ...+++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~-~~~~~i~~~dqi~~~~---~~~d~i---- 85 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VP-AESASIPLVDRIFTRI---GAEDSI---- 85 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------cc-ccccccCCcCEEEEEe---cCcccc----
Confidence 34555668999999999999999999999953221 112211 11 1122344433322211 111111
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 255 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
.. ....++++++| +..+.+++.+|+++|+||||+|||+.....+
T Consensus 86 ------------------------------~~-----~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l 129 (202)
T cd03243 86 ------------------------------SD-----GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAI 129 (202)
T ss_pred ------------------------------cC-----CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHH
Confidence 00 11346666665 7777788899999999999999999988887
Q ss_pred HH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.. .++.+.+.+.++|++||++ ++...+|++..++.|++...+...++.
T Consensus 130 ~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 130 AYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 65 4666666689999999985 356789999999999999988765543
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=9.8e-17 Score=157.33 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=99.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~ 247 (562)
++.+.+|+++++++|++++|+||||+||||++++|++.. +..++| || |..+..+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------------HHHHcCCCc---chhhcCccCh
Confidence 457999999999999999999999999999999999732 111222 33 3344556777
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
|+|... ++..+..+. ....+|+|++|+ ..+.+++.+|+++|||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 776432 122211111 124699999975 55667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCcEEEEEecCCC
Q 008534 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9876665 4557777777999999999854
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.66 E-value=3.3e-16 Score=154.93 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=109.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.+.+|++++.++ ++++|+|||||||||||++|++...- |+ .|..+.. .+..++|+.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999988 99999999999999999999863321 11 1222221 1345777765 567778887
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP---TSG 325 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP---Tsg 325 (562)
|+..+.. . + ..|.++++-+...+.+|+++||||| |++
T Consensus 85 ~ls~g~s--------~-------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 DLAGGRS--------T-------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhccCcc--------h-------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 7764310 0 0 0112223323333569999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
+|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 888652 23344444555 88999999995 467889998888899988877766654
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=2.4e-15 Score=153.27 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=96.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-----~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (562)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|.+ +++.++|.+|..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 6789999999999999999998654 45899999999874 23445678888865 3445566554210
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
.. |+ ..+ ++..+|+++++|||++ ...+...+
T Consensus 183 ------~~--------------------------------~~---~~~--i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------AE--------------------------------GM---MML--IRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------HH--------------------------------HH---HHH--HHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 00 112 2235999999999974 23344444
Q ss_pred HHHHHCCcEEEEEecCCChH-H-----------HhcCCEEEEEcCCeEEEecChHHH
Q 008534 339 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~-i-----------~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.+ +.|.|+|+++|++... + ...|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 444 3699999999975431 1 25689999999887 66666554
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.60 E-value=4.6e-15 Score=155.02 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=132.6
Q ss_pred ccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 008534 169 EKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~G-----e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~ 243 (562)
.+.-+-+..+.|+.| |++..+|.||-|||||+++++|++. |...|+|-. -.|+|=||...-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 345677888888877 5789999999999999999999764 444454421 237788886443224
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
-||++.+.--.+. .-....-+.++++-|.+++..|.. +.+|||||.|||+||..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5898876532111 001123466777777777766654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+-||++.+...-..+++.. +.++|-.++.|+..... -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999988888888864 55899999999965432 3689998764
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.52 E-value=6.5e-13 Score=141.20 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc--
Q 008534 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-- 362 (562)
..+|.||+|++.||+.|+ .+|+|||||||+++||+..+..+++.|.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 569999999999999986 699999999999999999999999988754 4588999998643 3344
Q ss_pred CCEEEEEcCCeE
Q 008534 363 FDKLILLGKGSL 374 (562)
Q Consensus 363 ~D~i~vL~~G~i 374 (562)
.++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=1.1e-14 Score=140.49 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred CCCChhHHHHHHHHHHHhh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIII--NPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~--~P~iLlLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
..+|+|++| +++++.. +|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468888776 4444444 99999999999999999877765 556667664 88999999996 367778754444
Q ss_pred cCCeEEE
Q 008534 370 GKGSLLY 376 (562)
Q Consensus 370 ~~G~iv~ 376 (562)
.+++...
T Consensus 135 ~~~~~~~ 141 (185)
T smart00534 135 RNLHMSA 141 (185)
T ss_pred eEEEEEE
Confidence 4444433
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.47 E-value=6.1e-14 Score=123.25 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=61.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lT 245 (562)
+.+|++++|++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345557788777 564 59
Q ss_pred HHHHHHHH
Q 008534 246 VKETLTYA 253 (562)
Q Consensus 246 V~enl~~~ 253 (562)
|+|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999874
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=9.6e-13 Score=129.79 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=64.2
Q ss_pred HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 269 ~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
..+.+.+....+.. ..||||||.+++||--|+ .+.+++|||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34455666555532 269999999999997764 46799999999999999999999999999864
Q ss_pred CcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 345 GKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 345 g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+.=+|++||++ .++..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 46789999995 4688899887653
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.44 E-value=1.5e-13 Score=158.39 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=90.9
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHHHHHH
Q 008534 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (562)
Q Consensus 175 ~vs~~i~~G-e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~-l~~~lTV~enl~~ 252 (562)
.+|+.+.++ ++++|.||||+|||||||+|+|...- +..| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 378888887 99999999999999999999984211 1122 13333321 11 11111110
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
.+... . .+.+ ....+|+|+++++.|++++ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~---~---si~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 0111 1246999999999998877 799999999999999999999
Q ss_pred HH-HHHHHHHHHCCcEEEEEecCCC
Q 008534 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i-~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+ ...|..+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5677788777999999999964
No 423
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=9.7e-13 Score=129.98 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=87.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC-CCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~-~lTV~en 249 (562)
.|-+|+++.=..+.+++|.||||+|||||||.|+....- ...|...... ...++|..|....+. ..++.++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc
Confidence 345555553222379999999999999999999832111 1235433211 234777777533221 1111111
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
+| .-|-||++++++++.+|+++|||||++|+|
T Consensus 89 ----------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 89 ----------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred ----------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 12 235689999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHC---CcEEEEEecCCC
Q 008534 328 STTALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (562)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~---g~Tvii~tH~~~ 356 (562)
+.....+ ...++.+.+. +.++|++||++.
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 9765444 5678887654 248999999964
No 424
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.42 E-value=5.9e-13 Score=134.36 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC--CEe-CC-hhccC---cEEEEccCCCCCCCCCHHHHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~--G~~-~~-~~~~~---~igyV~Q~~~l~~~lTV~enl 250 (562)
+.+..|+.++|+||+|+|||||++.|++..........+++- +.+ .. .++.+ .+-++.+-+. +....+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 468899999999999999999999999755321111222221 111 11 11111 1222222221 111111
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHH-----------HcCCCccccccccCcccCCCChhH--------HHHHHHHHHHh
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVIN-----------ELGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~-----------~lgL~~~~~t~vg~~~~~~LSGGq--------rqRv~IAraLl 311 (562)
..... ..+.++...+ ...+...+++..+. ....+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~-~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPP-SGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcccc-CCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 11000 0000010000 00122333443332 335689999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~-i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+++|++.. ...+|.|.||+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999766554 54 55555457899999999875 578999999999997
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=8e-13 Score=129.89 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=44.2
Q ss_pred CChh--HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 008534 296 VSGG--ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 296 LSGG--qrqRv~IAraLl~~P~iLlLDEPT-----sgLD~~~~~~i~~~L~~l~~ 343 (562)
.+|+ |++++.||++++.+|+++++|||| ++||+.++..+.+.++++++
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 4444 999999999999999999999999 99999999999999999864
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.35 E-value=1.5e-11 Score=133.16 Aligned_cols=174 Identities=20% Similarity=0.274 Sum_probs=113.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC---Ch---------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~---~~---------~~~~~igyV~Q 236 (562)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 45689999 999999999999999999999999999854 3 4579999865432 21 24567889976
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH-HHHhhCCC
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-raLl~~P~ 315 (562)
.+.-. -.+....+.+ ..+.|.+..-|- |-++- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 1111111111 012222222221 21111 01111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 316 iLlLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
+.+.|| |+|+||.....+.+.++++.. .|. ||++.+|++++ .+||++.+|.+|+|+..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 122454 679999999999999999873 575 99999999874 6799999999999999998765
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.33 E-value=2.2e-12 Score=144.74 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCChhHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~----P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +++||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 34689999999
Q ss_pred cCCe
Q 008534 370 GKGS 373 (562)
Q Consensus 370 ~~G~ 373 (562)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=1.2e-11 Score=123.04 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=85.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.+.+|+++.+.+|++++|.||||+||||++++|++.... +..|.....- .-.++|..|= |..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccceE---EEEecCcc
Confidence 35789999999999999999999999999999999983221 3356543221 1123333331 11111111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC--hhHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IAraLl~~P~iLlLDEPTsgL 326 (562)
++.- ++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQH------------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred cccc------------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 1110 011 11223333333334579999999999998
Q ss_pred CHHHHHHH-HHHHHHHHHC-CcEEEEEecCCC
Q 008534 327 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 327 D~~~~~~i-~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87766664 4566676665 889999999965
No 429
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=6e-12 Score=150.60 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred cccCCCChhHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHH
Q 008534 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~ 360 (562)
..++.|||||++||+||+||+. +|++|||||||+|||+.+...+++.|+.+...|++|+||||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4568899999999999999986 79999999999999999999999999999878999999999975 467
Q ss_pred hcCCEEEEEcCC
Q 008534 361 HKFDKLILLGKG 372 (562)
Q Consensus 361 ~~~D~i~vL~~G 372 (562)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=99.29 E-value=7.5e-12 Score=139.84 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=69.5
Q ss_pred CCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+||||+|||+||++++. +|+++|||||++|||..++..+.+.|+++++ +.+||+|||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 789999999985 45899999999
Q ss_pred cCCe
Q 008534 370 GKGS 373 (562)
Q Consensus 370 ~~G~ 373 (562)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.29 E-value=4.3e-12 Score=142.11 Aligned_cols=78 Identities=24% Similarity=0.398 Sum_probs=69.1
Q ss_pred cCCCChhHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh
Q 008534 293 VRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl----------~~P~iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~ 361 (562)
+..||||||||++||++|+ .+|++||||||| ++||+.....+.+.|+++ .|.|||++||++. +..
T Consensus 466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~ 541 (562)
T PHA02562 466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ 541 (562)
T ss_pred hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence 4679999999999999987 599999999998 789999999999999998 4889999999964 457
Q ss_pred cCCEEEEEcC-CeE
Q 008534 362 KFDKLILLGK-GSL 374 (562)
Q Consensus 362 ~~D~i~vL~~-G~i 374 (562)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
No 432
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.28 E-value=8.1e-12 Score=131.01 Aligned_cols=169 Identities=28% Similarity=0.404 Sum_probs=117.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h------------ccC--cEEEEccCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQDD 238 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~------------~~~--~igyV~Q~~ 238 (562)
.||++.+++|.||-||||-+++++|++. |+. |.- .++-+... + ++. +.-||.|-|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-pnl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-PNL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-CCC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 5899999999999999999999999875 332 211 01111100 0 000 011222211
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEE
Q 008534 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (562)
Q Consensus 239 ~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLl 318 (562)
... ..+|.++|. .........++++.+.|....+.. +..|||||-||.+||.+-+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re-----~~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDRE-----VEQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhh-----hhhcccchhhhhhhhhhhhhhcceeE
Confidence 111 113333332 112222455677777777666654 35899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+|||.+-||...+..--..++.+....+=||++.||++- +--+.|-|++|..
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 999999999999999999999998888999999999874 4446788888864
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.28 E-value=3.6e-12 Score=147.35 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
..+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. .+..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999999888864 566777778999999999542 33344555444 55
Q ss_pred eEEEe
Q 008534 373 SLLYF 377 (562)
Q Consensus 373 ~iv~~ 377 (562)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 65553
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=5.6e-11 Score=133.10 Aligned_cols=138 Identities=23% Similarity=0.386 Sum_probs=103.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHH------HHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC-
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN- 313 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~- 313 (562)
+..|++.+.+.|...+.+... .....+..+.+ +|-.+||... -.++...+|||||.||+-||..|=.+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YL----tL~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYL----TLSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcc----cccccCCCcChhHHHHHHHHHHhcccc
Confidence 335778888887765542211 11111112222 3344566532 12344568999999999999999765
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 314 -PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 314 -P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
-=+++||||+.||-+..-.++++.|++|.+.|-|+|+|.||.+ .+..||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3568999999999999999999999999999999999999954 57889999987 5789999999999875
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.19 E-value=3.2e-11 Score=117.29 Aligned_cols=64 Identities=22% Similarity=0.489 Sum_probs=53.9
Q ss_pred cCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 293 VRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
...+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|++||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999999988776 999999999999999999999999887765789999999864
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.18 E-value=2.6e-10 Score=108.97 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=64.5
Q ss_pred ccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh-----
Q 008534 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS----- 357 (562)
Q Consensus 292 ~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~----- 357 (562)
.+..+|+|++| +.....+...+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34578999998 4555555667999999999999999 888888888998888889999999998653
Q ss_pred ---HHHhcCCEEEEEc
Q 008534 358 ---RLFHKFDKLILLG 370 (562)
Q Consensus 358 ---~i~~~~D~i~vL~ 370 (562)
.+..+||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 1457789999886
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=5.3e-11 Score=117.97 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=88.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.|-+|+++.+++|++++|.||||+||||+++.+++...- ..-| ..+... ...++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999974221 0112 122111 1112222 22333333333
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
++..+. + .+. -|-+|++-....+.+|+++|||||++|+|+
T Consensus 85 ~~~~~~--------S-------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKGE--------S-------------------------------TFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccCc--------c-------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 332210 0 000 123333333333467999999999999999
Q ss_pred HHHHHHHHH-HHHHHHC-CcEEEEEecCCC
Q 008534 329 TTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 329 ~~~~~i~~~-L~~l~~~-g~Tvii~tH~~~ 356 (562)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 998888887 6777765 899999999964
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.17 E-value=3.8e-10 Score=112.78 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=91.4
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTL-l~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~ 257 (562)
-+++|++++|.|||||||||| ++++++... .| ..+.|+..+ .+..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 389999999999999999999 688886332 12 124555532 34555555433221
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHH
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGL----DST 329 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgL----D~~ 329 (562)
. . +++.... +.-...+ .. ..+|+++.++-.+.+.+-. +|+++++||||+++ |+.
T Consensus 76 ~--~---------~~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--D---------INKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--c---------hHHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 0 0111110 0000001 01 2367776666555544433 69999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhcCCEEEEEc
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~------~i~~~~D~i~vL~ 370 (562)
....+++.++.+++.|.|+++++|.... .+..+||-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998778877776554210 0123467777775
No 439
>PRK03918 chromosome segregation protein; Provisional
Probab=99.16 E-value=6.2e-11 Score=139.58 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.6
Q ss_pred ccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 292 ~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
.+..|||||++ |++||++++.+|+++||||||++||+..+..+.+.|..+...+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45789999999 555666788999999999999999999999999999998766789999999963 5688999
Q ss_pred EEEEcC
Q 008534 366 LILLGK 371 (562)
Q Consensus 366 i~vL~~ 371 (562)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.15 E-value=2.2e-11 Score=116.07 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
..+||+++-++.+++..+.+|++|++||| +.++|+ .+.+.+.++.+.++++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP----KFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----HHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 445543 45666666666789999999984 24567999999999
Q ss_pred CeEEEec
Q 008534 372 GSLLYFG 378 (562)
Q Consensus 372 G~iv~~G 378 (562)
|++++.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
No 441
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.1e-10 Score=142.58 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCCccHH---HHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH------HHHHHHHHh
Q 008534 241 FPHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEII 311 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq------Rv~IAraLl 311 (562)
|. .|+.+||.+ . +. .+.. ....+..+++.. +... ++.++. ...||||||| |++|||+|+
T Consensus 1154 ~~-~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1154 YR-GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred cC-ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHh
Confidence 44 599999997 2 11 1111 111223333322 2333 555542 3579999999 999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCCChHHHhcC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+|+||+|||||+|||+.+...+.+.|..+.. .|.|||+|||++.. +..+|
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~~~ 1277 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VELLG 1277 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHHHh
Confidence 99999999999999999999999999988742 37899999999753 44443
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=1.9e-10 Score=137.54 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=69.6
Q ss_pred cccCCCChhHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc
Q 008534 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~--------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~ 362 (562)
..+..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||+||||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568999999999999999996 89999999999999999999999999999888999999999743 24455
Q ss_pred CCEEEEEcC
Q 008534 363 FDKLILLGK 371 (562)
Q Consensus 363 ~D~i~vL~~ 371 (562)
..+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 667777654
No 443
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.10 E-value=1.8e-09 Score=126.10 Aligned_cols=78 Identities=24% Similarity=0.227 Sum_probs=64.9
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH--------HhcCCEEEEEcCCeEEEecChH
Q 008534 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL--------FHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 311 l~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i--------~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
..+|.++++|||+.+| |+..+..+.+.++.+.+.|.++|++||++.... .+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 4799999999999999 799999999999999888999999999986521 367999999999998777643
Q ss_pred HHHHHHHhcCC
Q 008534 382 EAMAYFSSIGC 392 (562)
Q Consensus 382 el~~~f~~~g~ 392 (562)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.07 E-value=4.3e-10 Score=117.16 Aligned_cols=143 Identities=19% Similarity=0.228 Sum_probs=93.5
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 176 vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.... +....+..+.++.+... .
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~------------ 200 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG--Q------------ 200 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--C------------
Confidence 667899999999999999999999999998553 445666664311 00000112222221100 0
Q ss_pred hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 008534 255 LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (562)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i 334 (562)
+ ...++ ..-.++.+|-.+|+++++|||.+ .++
T Consensus 201 ------------------------~-------------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 201 ------------------------G-------------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------C-------------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 0 00011 11134556778999999999996 345
Q ss_pred HHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 335 ~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
.+.++.+...+.+++.++|..+ .....||+..|..|++...|.+.+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 5666666532346799999976 45668999999999999989887765
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.04 E-value=5.2e-10 Score=132.22 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.5
Q ss_pred ccCCCChhHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-cEEEEEecCCChHHHhc
Q 008534 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 362 (562)
Q Consensus 292 ~~~~LSGGqrqRv~I------AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~Tvii~tH~~~~~i~~~ 362 (562)
.+..||||||+|++| |++|+.+|++++|||||++||+.....+.+.|+... .. + .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999975 4578
Q ss_pred CCEEEEEc
Q 008534 363 FDKLILLG 370 (562)
Q Consensus 363 ~D~i~vL~ 370 (562)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 446
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.03 E-value=1e-09 Score=101.20 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
.+.++.+++..+++...+|+++++|||++ +.|......+.+.+....+.+.|+|+++|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45566677888899999999999999995 445454555555555544458999999998754
No 447
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=4.8e-09 Score=100.07 Aligned_cols=83 Identities=23% Similarity=0.448 Sum_probs=62.5
Q ss_pred cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEE
Q 008534 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (562)
Q Consensus 289 g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~ 367 (562)
|+...+..|-||-=---+.+.+ .+.-|+|||||-++|.|.-+.+++..|+++++.|.-+||.||-|- +..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEE
Confidence 3334456889986544444443 567899999999999999999999999999999999999999874 3332 24666
Q ss_pred EEcCCeE
Q 008534 368 LLGKGSL 374 (562)
Q Consensus 368 vL~~G~i 374 (562)
-++.+-+
T Consensus 200 ~~~~~g~ 206 (233)
T COG3910 200 EISESGI 206 (233)
T ss_pred EEecCCc
Confidence 6666543
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.98 E-value=5.3e-10 Score=134.67 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.8
Q ss_pred ccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45789999999999999985 57799999999999999999999999999865 5789999999763 57899997
Q ss_pred EEc
Q 008534 368 LLG 370 (562)
Q Consensus 368 vL~ 370 (562)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.98 E-value=1.8e-09 Score=116.54 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=115.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.++-++++..|. .+..+++++ +.+.+|+.++|+|+||+|||||+++|++... +..|.|.+.|
T Consensus 130 ~~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iG-------- 191 (432)
T PRK06793 130 AFEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVG-------- 191 (432)
T ss_pred chheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCC--------
Confidence 355566655441 235688885 9999999999999999999999999998542 3345544433
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr 308 (562)
|.. .+|.|.+..-. ..-++... ..+ ....+-|.|+|+|++.+.
T Consensus 192 -------erg-----~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a 234 (432)
T PRK06793 192 -------ERG-----REVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLA 234 (432)
T ss_pred -------CCc-----ccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHH
Confidence 321 46666654211 11112110 111 123578999999999998
Q ss_pred HHh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 309 EII-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 309 aLl-------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
+.+ .++-+|++|+||...|+. .+|-..+.+....|.+..+.+|- . ++++|.-...+|.|...++.
T Consensus 235 ~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 235 TSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 888 689999999999999996 55555556555458888888883 3 34455555678988777754
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.95 E-value=3.9e-09 Score=103.06 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. ...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 665543333 345569999999999763 46678887663
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.89 E-value=1.4e-08 Score=101.29 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=96.6
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| ..+.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 445554 45699999999999999999999988752111 1 11 1244555432 23332
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~--~P~iLlLDEPTsg-- 325 (562)
+.-...... .. .+.+. .+.-...+..+. .....+.++++.+.+...++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 221111110 00 01110 011011111000 112356788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh------HHHhcCCEEEEEc
Q 008534 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (562)
Q Consensus 326 -LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~------~i~~~~D~i~vL~ 370 (562)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 45555556666677767778999999998643 1344567676665
No 452
>PRK02224 chromosome segregation protein; Provisional
Probab=98.87 E-value=4.2e-09 Score=124.29 Aligned_cols=78 Identities=31% Similarity=0.430 Sum_probs=67.2
Q ss_pred cCCCChhHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCc-EEEEEecCCChHH
Q 008534 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (562)
Q Consensus 293 ~~~LSGGqrq------Rv~IAraLl~~-----P-~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvii~tH~~~~~i 359 (562)
+..||||||+ |++||++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-- 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-- 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH--
Confidence 4689999999 99999999864 3 67999999999999999999999999876564 89999999753
Q ss_pred HhcCCEEEEEcCC
Q 008534 360 FHKFDKLILLGKG 372 (562)
Q Consensus 360 ~~~~D~i~vL~~G 372 (562)
...||++++|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999643
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.86 E-value=3.3e-09 Score=128.06 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.0
Q ss_pred ccCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.+.|+++.. +..+|++||++. ++..||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 7899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 008534 368 LLGK 371 (562)
Q Consensus 368 vL~~ 371 (562)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.84 E-value=1e-08 Score=112.23 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=92.7
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.++++.+..++.|.+++++||||+||||++..|++++. ...|. ++|++|.+|. | ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 35667777888999999999999999999999998542 12231 2588999886 3 47899999
Q ss_pred HHHHhhC-CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH-HHHHHHHHhhCC-----CEEEEeCCC
Q 008534 251 TYAALLR-LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPT 323 (562)
Q Consensus 251 ~~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq-Rv~IAraLl~~P-----~iLlLDEPT 323 (562)
.+.+... .+.. ......+......++.+....+| .+...+++. .+.-..+++.++ .+|+||.++
T Consensus 306 r~~AeilGVpv~----~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 306 RIYGKILGVPVH----AVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHhCCCee----ccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 9866543 2211 11111222334455655433333 333223322 234444555554 689999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCcEEEEEecC
Q 008534 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~ 354 (562)
.+ ..+.+.++.+...+.+-+|.|+-
T Consensus 377 ~~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 377 HG------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred cH------HHHHHHHHHhccCCCCEEEEeCC
Confidence 87 33444555554456665666663
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.81 E-value=3e-08 Score=99.47 Aligned_cols=136 Identities=21% Similarity=0.387 Sum_probs=83.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC-EeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G-~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~ 261 (562)
|++..|+||+|+|||||+-.++-... .|.=++++ ... .-...+-|+.=++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 67899999999999999988873221 23211111 111 1123355554322
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH----------------HHhhCCCEEEEeCCCCC
Q 008534 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTSG 325 (562)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr----------------aLl~~P~iLlLDEPTsg 325 (562)
+..+...++..+...+++.+..+..+ +.+|+.|++.+++ ....+|+++++| |++.
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12223334555555555433322221 2245556655543 335799999999 7754
Q ss_pred ------CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCC
Q 008534 326 ------LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 326 ------LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
+|+.....+++.|++++++ |.|||+++|..-
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 7999999999999998764 899999999853
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.79 E-value=4.3e-09 Score=113.82 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..+|++||+++++||+++|+|||||||||||+ +|.. .|+.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5543 3554558999999875
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=2.3e-07 Score=81.96 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHCCcEEEEEec
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ------MLQDIAEAGKTVVTTIH 353 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~------~L~~l~~~g~Tvii~tH 353 (562)
...+++..+..++++-..+|.++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 477888888888888888899999999999999988776654 12222334678888888
No 458
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.65 E-value=1e-07 Score=100.82 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 305 ~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+|+++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4667888999999999997 8888765444 34569999999998653 4556777554
No 459
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.62 E-value=3.4e-07 Score=107.62 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh--cCCEEEEEcCCeEE
Q 008534 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~--~~D~i~vL~~G~iv 375 (562)
|++++..+|.++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.. .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999865 333 23434334444444
No 460
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=7.8e-08 Score=102.58 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCChhHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~---------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+|.||+|++.||.+|+. +|+|||||||+++||+..+..+++.|.+. |..|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 599999999999999999 99999999999999999999999999753 679999999864
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.58 E-value=2.3e-07 Score=101.01 Aligned_cols=176 Identities=19% Similarity=0.209 Sum_probs=106.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K---------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~---------~~~~~igyV~Q 236 (562)
+..+++++ +.+.+|+.++|+|+||+|||||+++|++.. . +..|.+...|..-. . .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 45799999 999999999999999999999999999854 3 34566666555332 1 12233344444
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
.+. +..+-..-+. .--.+.+.+...|- |-++- ..+|+- .|+|+=- ==
T Consensus 227 ~d~-----~p~~r~~~~~------------~a~t~AE~frd~G~----~Vll~---~DslTr-------~A~A~RE--is 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGAY------------VATAIAEYFRDQGK----DVLLL---MDSVTR-------FAMAQRE--IG 273 (440)
T ss_pred CCC-----CHHHHHHHHH------------HHHHHHHHHHHCCC----CEEEE---EeChHH-------HHHHHHH--HH
Confidence 321 2211111000 00011122222221 22111 112221 1111100 00
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHCCc-------EEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 317 LFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 317 LlLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
+.+.|| +.|+||.....+-+.+.+....+. ||++.+||..+ -.+|++..+.+|+|+..+...+.
T Consensus 274 l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 335675 459999999999999998876566 88888999754 46899999999999999887664
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.56 E-value=2.1e-08 Score=99.51 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=33.8
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~ 221 (562)
+-|+.+ .+=+++|++++|.||+|+|||||...++.....+. .+.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g-~~~~~is~e 57 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG-DPVIYVTTE 57 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence 345553 45799999999999999999999886552111111 344566553
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.56 E-value=6.9e-08 Score=104.43 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=66.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh----------hccCcEEEEcc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~--~G~I~i~G~~~~~----------~~~~~igyV~Q 236 (562)
+..+|+++ ++|.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.. ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 46799999 999999999999999999999999999854 3321 1444445544421 12446899999
Q ss_pred CCCCCCCCCHHHHHHHHHhh
Q 008534 237 DDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 237 ~~~l~~~lTV~enl~~~~~~ 256 (562)
+...+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999899999999876643
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.55 E-value=1.9e-07 Score=90.24 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=61.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEccCC--CCCCCCCHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~--~l~~~lTV~e 248 (562)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+..-. ...+..++++.|.+ ..++..++.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4555667789999999999999999999999998653 45799999774321 12234566666554 3466789999
Q ss_pred HHHHHHhhC
Q 008534 249 TLTYAALLR 257 (562)
Q Consensus 249 nl~~~~~~~ 257 (562)
.+..+.+..
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 988776543
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.55 E-value=5.4e-09 Score=115.45 Aligned_cols=167 Identities=17% Similarity=0.201 Sum_probs=98.6
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccEEEECCEeCChhc---cCcEEEEccCCCCCCCC
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~--G~l~~~~~~G~I~i~G~~~~~~~---~~~igyV~Q~~~l~~~l 244 (562)
+-|+.+ .+=+++|..+.|.||+|||||||..-++ |. .... ...+++....-...+ .+.+|+-.++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~-~~~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-IHFD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HhCC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc---
Confidence 346665 5578999999999999999999998663 31 1111 234555444322222 12345444321100
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH--HHHhhCCCEEEEeCC
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA--raLl~~P~iLlLDEP 322 (562)
+++.+- . .... .....+++.+++.+..+.. ...+|+|++|||.|+ .+|...|+.+
T Consensus 83 ---g~l~~~-----~--~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFIL-----D--ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEEE-----e--cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 000000 0 0000 0001122334444333332 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH-------H-HhcCCEEEEEc
Q 008534 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (562)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~-------i-~~~~D~i~vL~ 370 (562)
...+..+.+.++.+++.|.|+|+++|++... + ..+||.|++|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677888999998888899999999986420 1 34789999986
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.5e-07 Score=109.75 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=69.6
Q ss_pred ccCCCChhHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl------~~--P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+..|||||+=.++||.+|+ .+ -++|||||||..||+.....++++|..+...+.+|+||||+. ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887776 35 699999999999999999999999999988899999999995 466789
Q ss_pred CEEEEEcCC
Q 008534 364 DKLILLGKG 372 (562)
Q Consensus 364 D~i~vL~~G 372 (562)
|.++.++..
T Consensus 890 ~~~i~V~k~ 898 (908)
T COG0419 890 DVRIRVKKD 898 (908)
T ss_pred CeEEEEEec
Confidence 999988753
No 467
>PRK14079 recF recombination protein F; Provisional
Probab=98.54 E-value=1.7e-07 Score=99.53 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCE
Q 008534 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~ 365 (562)
-+|+||+|++.||..|+ .+|++++||||+++||+..+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 23555555432 56999
Q ss_pred EEEEcCCeEEEe
Q 008534 366 LILLGKGSLLYF 377 (562)
Q Consensus 366 i~vL~~G~iv~~ 377 (562)
++.+.+|++.-.
T Consensus 335 ~~~~~~~~~~~~ 346 (349)
T PRK14079 335 TLRIEAGVFTPE 346 (349)
T ss_pred EEEEeccEecCC
Confidence 999999887543
No 468
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.46 E-value=1.9e-07 Score=90.75 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=64.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh-hCCCCCcc
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 263 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~-~~~~~~~~ 263 (562)
+++|.||||||||||.++|++.+. +|. +.++++|+... .++..+....... ...+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 589999999999999999998541 222 33444444332 2233332222111 0111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
..+...+.+..+...+..+. +....|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11233445555544332222 234678888776555 5688999999999999986
No 469
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.41 E-value=6.8e-07 Score=96.99 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.1
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC---EeC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G---~~~ 223 (562)
+..++.++++..|. .+..+++.++ .|.+|+.++|+||||||||||+++|++.. . +..|.|.+.| .++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 34689999988772 2467899996 99999999999999999999999999743 3 4568888854 444
Q ss_pred Ch--------hccCcEEEEccCCC
Q 008534 224 SK--------SLKSKIGFVTQDDV 239 (562)
Q Consensus 224 ~~--------~~~~~igyV~Q~~~ 239 (562)
.. ..++.|+||+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12357999999764
No 470
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.39 E-value=6.5e-07 Score=105.15 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=87.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
...|-+|+++. ..+.++.|.|||.+||||+||.++-...- ..-| +|||-+..-+ .+.+
T Consensus 594 ~~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~i---~~~d 651 (854)
T PRK05399 594 EPFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESARI---GIVD 651 (854)
T ss_pred CceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceEe---cccC
Confidence 34577888888 67889999999999999999998732110 0011 2344322111 1111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh--CCCEEEEeCC---C
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---T 323 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~--~P~iLlLDEP---T 323 (562)
.| +.++|-.+ . ...++|-=+.....++.+|-. +++++||||| |
T Consensus 652 ~I------------------------~triga~d---~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGT 699 (854)
T PRK05399 652 RI------------------------FTRIGASD---D-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGT 699 (854)
T ss_pred ee------------------------eeccCccc---c-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 11 11122111 1 124577777777777777665 8999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCE
Q 008534 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~ 365 (562)
+.+|..+ .....++.+.+. +.++|++||.. ++..++++
T Consensus 700 s~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 700 STYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8899544 445566666655 58999999993 36666664
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.37 E-value=5.1e-07 Score=110.73 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.2
Q ss_pred cCCCChhHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 293 ~~~LSGGqrqRv~----IAra--------Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.+.++ +.++||+||.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 5789999999996 5755 45799999999999999999999999999887 78999999873
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=1.6e-06 Score=105.48 Aligned_cols=164 Identities=16% Similarity=0.241 Sum_probs=90.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
.=+++..+.+++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.+++..+ +....
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~~~ 266 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMKLH 266 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chhHH
Confidence 345677889999999999999999999999876643 34688988763221110 0 0001111000 11100
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~ 333 (562)
.....+.+++...++. +.. .++.|+| |..++-+|+||+- |.. .
T Consensus 267 ------------l~~~~l~~il~~~~~~-----------~~~-~~~~~~~------L~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 267 ------------LQRAFLSEILDKKDIK-----------IYH-LGAMEER------LKHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred ------------HHHHHHHHHhCCCCcc-----------cCC-HHHHHHH------HhCCeEEEEEeCC----CCH---H
Confidence 0112233333333321 111 2555655 3355667888984 433 3
Q ss_pred HHHHHHHHH---HCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHHHHHHHhcCC
Q 008534 334 IVQMLQDIA---EAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (562)
Q Consensus 334 i~~~L~~l~---~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el~~~f~~~g~ 392 (562)
.++.|.... ..|.+||+|||+... +.. .+|+++.+. .=+.++..+.|....+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhc
Confidence 344554432 348899999999542 222 257766553 1245677777776544
No 473
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=4.1e-07 Score=87.33 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=47.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh--cc-CcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~--~~-~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
+|++++|+|+||||||||+++|++.+. -+.++|.++... .+ ...|+.+|+...++..++..++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998542 157888776421 22 2356777775555556666666654
No 474
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.25 E-value=3.2e-05 Score=90.93 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=41.7
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
-.+|.++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 35899999999999999 78889999999999888999999999975
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.22 E-value=6.4e-05 Score=88.25 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=43.2
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 310 IIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||.+..
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 446899999999999999 888999999999998889999999999754
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.17 E-value=5.3e-05 Score=77.04 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=33.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.+.|+.+.+-+.+|+++.|.||+|+|||||+..++.
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4467999988999999999999999999999988874
No 477
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.13 E-value=5.9e-06 Score=89.80 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=69.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC---EeCCh----hcc---CcEEEE----
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV---- 234 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G---~~~~~----~~~---~~igyV---- 234 (562)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .++ .+.++|
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvat 228 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVST 228 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeC
Confidence 45689998 99999999999999999999999999985532 3346777755 44421 121 235555
Q ss_pred -ccCCC--CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC
Q 008534 235 -TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (562)
Q Consensus 235 -~Q~~~--l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (562)
+|++. +.+.+ +...+.-..+.+....+...+...++.+++++++|.
T Consensus 229 s~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 229 SDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 33322 333333222222111123345667788888888884
No 478
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.12 E-value=5.1e-06 Score=88.85 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3699999999983 2346886 999999999999999999999999999999643
No 479
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=2.6e-05 Score=69.52 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCcEEEEEecCC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQP 355 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvii~tH~~ 355 (562)
.+..........++.++++||.-.. ++.....+.+.+..... .+.++|++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4444555566778999999998765 56666778888877643 467888888864
No 480
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.09 E-value=9.2e-05 Score=79.58 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=100.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCC-CCCCCCCHHHHHHHHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~ 257 (562)
-|++| +++|+|.+=-||||||++|.--.|+. .-| ||...--. ......+--++ .-...
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT-~~~avkirAEDGR~V~~-------------- 299 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVT-DPDAVKIRAEDGRSVEG-------------- 299 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEE-CCCceEEEecCCceEeC--------------
Confidence 58899 99999999999999999998655532 123 33321000 00000111111 00000
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHH
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTAL 332 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgL-----D~~~~~ 332 (562)
..+.-++. .|+...||.- -.-.+=||-.-|=..|..||=..+++||+||=||+- |...+.
T Consensus 300 -----------vDISpFI~--~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~ 364 (448)
T PF09818_consen 300 -----------VDISPFIN--NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQA 364 (448)
T ss_pred -----------ccchHHHh--hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHH
Confidence 00112233 2355555431 112457999999999999999999999999999975 554444
Q ss_pred HH----------HHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 333 RI----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 333 ~i----------~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.+ ++.++.+. +.|.+.|+++-- +...+..+|+|++|++-+.
T Consensus 365 Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 365 LVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 44 55666774 458877777755 4457899999999988764
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.07 E-value=4.6e-06 Score=66.22 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=29.4
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 008534 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (562)
Q Consensus 173 L~~vs~~i~~-Ge~~alvGpsGsGKSTLl~~L~G~l~ 208 (562)
+++.++.+.+ |.+++|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4556777875 57999999999999999999985443
No 482
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.07 E-value=4.5e-06 Score=83.27 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE----EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~----I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~ 254 (562)
.+..+++|.||||||||||++.|++.+. +.+|. |.+|+.......+...+++++... +..+++.+.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHH
Confidence 4567999999999999999999998664 34676 555554433333445677766433 34556666665543
No 483
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.06 E-value=1.4e-05 Score=87.63 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.6
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCcEEEEEecCCCh-------HHHhcCCEEEEEcCCe
Q 008534 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (562)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~-------~i~~~~D~i~vL~~G~ 373 (562)
.+|+++++|.-++=. + ....++++..|.++++ .|.|+++++|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999876521 1 2234556666777754 59999999996432 1456799999998654
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=9.1e-06 Score=86.55 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
-++.+.-.+++|++++|+|+||+|||||++.|+|... +..|+|.+++.... ...++.+.+++|+..+++. ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666778999999999999999999999998543 45799999875432 2235679999999888864 566665
Q ss_pred HH
Q 008534 251 TY 252 (562)
Q Consensus 251 ~~ 252 (562)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 485
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.05 E-value=2.7e-06 Score=82.90 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=43.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~ 237 (562)
++|++++|+|+||||||||.+.|++.+.. .-.|.+.++|.++...+...++|++|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67889999999999999999999986642 224789999988764444445666654
No 486
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.02 E-value=1.1e-05 Score=68.93 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=36.6
Q ss_pred cCCCChhHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 293 VRGVSGGERK-RVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 293 ~~~LSGGqrq-Rv~IAraLl------~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
..++|||||| .+.++.+++ . .|++++|||||++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4679999995 444443332 2 3799999999999999999999999874
No 487
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.01 E-value=2.3e-06 Score=83.90 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
No 488
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=7.2e-06 Score=75.30 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL-----l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l 341 (562)
.+...+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445565554331 12222 2345789998887666553 2345655 99999999999999888764
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.00 E-value=6.9e-06 Score=79.22 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998532 25777776654
No 490
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.98 E-value=6.1e-06 Score=85.33 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=48.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
-.++||.||||||||||+++|.+.+...+.+|.|.+ ||.-.....++..++. |+..+.+.+++.+.+.+...+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence 369999999999999999999986542233577655 4433333333345544 555566677777777665443
No 491
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.98 E-value=7.9e-05 Score=71.38 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCccccccccCcccCCCChhHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~--IAraLl~-~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
.+.+.++..+++- -.+++ ....+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555543 34443 99999999999999999887654
No 492
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.97 E-value=5.9e-06 Score=86.62 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=52.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----------hccCcEEEEccCCCCCCCCCHHHHH
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----------SLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----------~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
++|++++|+||||+||||++..|++.+. ..+++|.+.+.|..+ ..+..+.+++|.....|..++++++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999999998654 346789887776521 1245688998876555555666666
Q ss_pred HHH
Q 008534 251 TYA 253 (562)
Q Consensus 251 ~~~ 253 (562)
..+
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 543
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.96 E-value=9.5e-06 Score=78.30 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh-HHHhcCCEEEEEcCC
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~-~i~~~~D~i~vL~~G 372 (562)
-|+-+|..||..+..+|+.+..+| +.+||....++.+.+.+....|.+||+.+|.+.. .+...||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988887 7899999999999998876556799999998742 245689999887543
No 494
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=2.9e-05 Score=88.36 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=67.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC------CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~------~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+.++|+||||+|||||+++|.+..... ...+-|.+||..+.... ....+-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~-----------------~~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP-----------------REVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH-----------------HHHhHHhcCC--
Confidence 4569999999999999999998743210 11233555554321000 0001111110
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
.. +.....+...++..|+.+..+.. +..+||| +||||| +..||+..+..+++
T Consensus 236 -----~~-~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----VH-DPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----cc-HHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 01 11112344456777876555443 4578888 999999 79999999999999
Q ss_pred HHHH
Q 008534 337 MLQD 340 (562)
Q Consensus 337 ~L~~ 340 (562)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=97.93 E-value=1.6e-05 Score=86.22 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=53.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCCh----h----ccCcEEEEccCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S----LKSKIGFVTQDD 238 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~~----~----~~~~igyV~Q~~ 238 (562)
+..+++++ +++.+||+++|+|+||+|||||+++|++. ..+. .-|.|-.+|.++.. . ..+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~-~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEH-SEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcC-CCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 99999999999999999999999999974 3332 12888888887642 1 235678887654
No 496
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.89 E-value=5.7e-05 Score=80.88 Aligned_cols=36 Identities=39% Similarity=0.650 Sum_probs=29.2
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-|+.+ .+=+.+|+++.|.|++|+|||||+..++...
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34443 2468999999999999999999999988644
No 497
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.87 E-value=7.9e-05 Score=79.41 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=31.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~~~ 223 (562)
++|.+++|+||+||||||+|++|++.+.. ++..+.|.....|+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi 175 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI 175 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc
Confidence 58899999999999999999999985532 22233554444443
No 498
>PRK13764 ATPase; Provisional
Probab=97.87 E-value=0.00011 Score=82.91 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=47.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------------CCChHHHhcCCEEEEEcCCeE
Q 008534 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------------QPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 310 Ll~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------------~~~~~i~~~~D~i~vL~~G~i 374 (562)
|..+|+++++||.-. .++ ++.+..++..|..++.+.| ++. .+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999974 332 3444444445778999999 654 35678999999999999
Q ss_pred --EEecChH
Q 008534 375 --LYFGKAS 381 (562)
Q Consensus 375 --v~~G~~~ 381 (562)
+|.++..
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7777643
No 499
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.86 E-value=4e-05 Score=73.02 Aligned_cols=25 Identities=48% Similarity=0.895 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|++++|+||||||||||++.|++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999754
No 500
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.83 E-value=1.5e-05 Score=88.67 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=51.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
-+++|.||||||||||++.|++.+ +..|.|.+||.... .+.+.+.+|++..++..++.++|.-
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL---p~vgvIsmDdy~~~---~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM---PSIAVISMDNYNDS---SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC---CCcEEEEEcceecc---hhhhCccCCChhhcchhHHHHHHHH
Confidence 489999999999999999999865 23689999997522 2346788999988888899999864
Done!