Query 008534
Match_columns 562
No_of_seqs 495 out of 3319
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.1E-51 1.1E-55 430.7 28.7 222 148-384 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 6.4E-51 2.2E-55 405.6 27.3 222 149-383 1-232 (235)
3 3gfo_A Cobalt import ATP-bindi 100.0 9E-51 3.1E-55 413.5 28.7 218 149-385 7-233 (275)
4 3rlf_A Maltose/maltodextrin im 100.0 9.6E-51 3.3E-55 429.4 29.6 218 149-385 3-223 (381)
5 1b0u_A Histidine permease; ABC 100.0 1.1E-50 3.7E-55 410.3 28.3 217 149-384 6-241 (262)
6 2olj_A Amino acid ABC transpor 100.0 1.4E-50 4.8E-55 409.7 29.0 218 149-385 24-248 (263)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 5.7E-51 1.9E-55 428.3 26.6 218 149-385 4-228 (359)
8 1vpl_A ABC transporter, ATP-bi 100.0 4.5E-50 1.5E-54 404.5 28.3 218 149-385 15-235 (256)
9 2pcj_A ABC transporter, lipopr 100.0 3.9E-50 1.3E-54 397.1 27.3 211 149-379 4-222 (224)
10 1g6h_A High-affinity branched- 100.0 4.5E-50 1.5E-54 404.5 25.4 218 149-382 7-239 (257)
11 2yyz_A Sugar ABC transporter, 100.0 1E-49 3.5E-54 419.4 28.1 218 149-385 3-223 (359)
12 2it1_A 362AA long hypothetical 100.0 1.3E-49 4.3E-54 419.2 28.6 218 149-385 3-223 (362)
13 1z47_A CYSA, putative ABC-tran 100.0 1.4E-49 4.8E-54 417.6 28.7 220 148-385 13-235 (355)
14 1g29_1 MALK, maltose transport 100.0 2E-49 7E-54 419.3 30.0 218 149-385 3-229 (372)
15 1ji0_A ABC transporter; ATP bi 100.0 1E-49 3.5E-54 398.0 25.2 216 149-384 6-227 (240)
16 1oxx_K GLCV, glucose, ABC tran 100.0 9.9E-50 3.4E-54 419.2 26.4 218 149-385 3-230 (353)
17 4g1u_C Hemin import ATP-bindin 100.0 1.3E-49 4.5E-54 403.2 25.6 215 149-384 11-236 (266)
18 1v43_A Sugar-binding transport 100.0 2E-49 6.7E-54 419.1 27.0 218 149-385 11-231 (372)
19 3nh6_A ATP-binding cassette SU 100.0 1.4E-49 4.9E-54 410.2 24.0 215 148-385 52-277 (306)
20 3d31_A Sulfate/molybdate ABC t 100.0 5E-49 1.7E-53 412.8 25.0 213 149-384 1-216 (348)
21 4a82_A Cystic fibrosis transme 100.0 2.2E-51 7.5E-56 458.2 7.2 351 9-385 187-564 (578)
22 3qf4_A ABC transporter, ATP-bi 100.0 1.8E-51 6.2E-56 459.6 6.3 357 9-385 189-566 (587)
23 3b5x_A Lipid A export ATP-bind 100.0 1.7E-50 5.9E-55 451.3 13.6 350 9-385 191-567 (582)
24 2yz2_A Putative ABC transporte 100.0 1.6E-48 5.6E-53 395.1 26.2 219 149-385 2-227 (266)
25 2onk_A Molybdate/tungstate ABC 100.0 1.1E-48 3.8E-53 390.7 24.3 211 150-384 2-215 (240)
26 3qf4_B Uncharacterized ABC tra 100.0 1.4E-50 4.7E-55 453.4 11.4 351 9-385 203-578 (598)
27 4f4c_A Multidrug resistance pr 100.0 1.1E-50 3.7E-55 489.0 10.7 356 8-385 261-641 (1321)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 1.6E-48 5.5E-53 391.6 24.7 220 149-382 3-230 (250)
29 3b60_A Lipid A export ATP-bind 100.0 1.1E-50 3.9E-55 452.7 9.3 356 9-385 191-567 (582)
30 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-48 5.9E-53 397.6 23.1 221 148-384 20-251 (279)
31 2zu0_C Probable ATP-dependent 100.0 8.8E-48 3E-52 390.0 27.1 223 148-384 19-253 (267)
32 2ff7_A Alpha-hemolysin translo 100.0 7.8E-48 2.7E-52 386.1 24.5 215 148-384 6-231 (247)
33 2yl4_A ATP-binding cassette SU 100.0 4.3E-50 1.5E-54 449.2 8.6 355 9-385 188-570 (595)
34 4f4c_A Multidrug resistance pr 100.0 1.9E-50 6.4E-55 486.9 6.0 351 12-385 925-1304(1321)
35 2ixe_A Antigen peptide transpo 100.0 4.3E-48 1.5E-52 393.1 22.2 223 148-385 15-245 (271)
36 2nq2_C Hypothetical ABC transp 100.0 6E-47 2.1E-51 381.0 27.0 211 149-384 4-216 (253)
37 1mv5_A LMRA, multidrug resista 100.0 1.3E-47 4.6E-52 383.3 18.7 216 149-385 1-226 (243)
38 2qi9_C Vitamin B12 import ATP- 100.0 7.3E-47 2.5E-51 379.6 23.8 207 149-384 4-221 (249)
39 3g5u_A MCG1178, multidrug resi 100.0 4.2E-48 1.4E-52 465.4 15.1 356 8-385 233-613 (1284)
40 2ghi_A Transport protein; mult 100.0 2.1E-46 7.3E-51 378.4 24.9 215 149-385 17-242 (260)
41 1sgw_A Putative ABC transporte 100.0 1.6E-46 5.3E-51 369.0 16.9 202 148-374 9-210 (214)
42 2pjz_A Hypothetical protein ST 100.0 1.5E-45 5.1E-50 372.8 23.0 211 149-385 1-215 (263)
43 2pze_A Cystic fibrosis transme 100.0 2E-45 7E-50 364.5 21.6 205 148-384 5-217 (229)
44 2cbz_A Multidrug resistance-as 100.0 3.7E-45 1.3E-49 364.5 22.6 211 149-385 3-217 (237)
45 3gd7_A Fusion complex of cysti 100.0 9.5E-46 3.3E-50 393.2 19.3 215 148-385 18-242 (390)
46 3g5u_A MCG1178, multidrug resi 100.0 5.7E-46 1.9E-50 446.9 10.6 221 148-385 1029-1258(1284)
47 2bbs_A Cystic fibrosis transme 100.0 2E-42 6.9E-47 354.6 17.9 200 149-385 40-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 4.9E-38 1.7E-42 351.6 21.6 205 148-385 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-38 1.2E-42 348.6 19.8 205 148-385 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.4E-37 1.2E-41 340.4 20.8 206 148-384 268-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-36 5.8E-41 343.5 17.5 207 169-384 30-297 (670)
52 2iw3_A Elongation factor 3A; a 100.0 4.2E-35 1.4E-39 339.6 24.1 198 149-385 435-635 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 1.2E-35 4.2E-40 331.9 17.9 202 153-385 350-559 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-35 3.5E-40 329.0 13.6 194 150-372 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 1.1E-35 3.8E-40 332.6 13.4 191 153-372 95-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 3.3E-35 1.1E-39 340.5 14.6 208 148-379 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 4E-34 1.4E-38 324.1 18.4 199 169-384 334-639 (670)
58 3ozx_A RNAse L inhibitor; ATP 100.0 4E-33 1.4E-37 307.9 7.5 180 173-374 14-215 (538)
59 3j16_B RLI1P; ribosome recycli 100.0 9.9E-33 3.4E-37 308.4 9.9 188 170-376 91-301 (608)
60 3pih_A Uvrabc system protein A 100.0 4.6E-31 1.6E-35 305.4 23.6 200 170-384 597-901 (916)
61 2r6f_A Excinuclease ABC subuni 100.0 2.5E-31 8.7E-36 306.1 18.1 208 148-384 628-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 4.4E-31 1.5E-35 303.3 19.7 208 148-384 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 7E-31 2.4E-35 303.4 17.3 208 149-385 647-960 (993)
64 4aby_A DNA repair protein RECN 100.0 9.9E-30 3.4E-34 271.1 19.4 203 171-378 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.2E-32 1.1E-36 295.3 -8.1 197 149-384 118-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.8E-26 1.3E-30 241.0 19.4 84 291-376 275-364 (365)
67 1e69_A Chromosome segregation 99.9 7.9E-26 2.7E-30 234.3 15.9 205 174-383 16-311 (322)
68 3b85_A Phosphate starvation-in 99.9 2.4E-29 8.1E-34 245.8 -11.8 140 169-356 12-159 (208)
69 2v9p_A Replication protein E1; 99.9 2.9E-30 1E-34 265.7 -21.5 169 149-389 101-270 (305)
70 4gp7_A Metallophosphoesterase; 99.9 2.1E-26 7.3E-31 217.1 3.3 143 175-356 1-160 (171)
71 1tq4_A IIGP1, interferon-induc 99.9 2.7E-27 9.2E-32 253.1 -9.4 172 169-367 35-248 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 1E-24 3.6E-29 207.7 4.0 144 185-376 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 1.1E-27 3.8E-32 232.3 -18.1 181 169-370 8-202 (207)
74 3b9q_A Chloroplast SRP recepto 99.9 1.8E-24 6.2E-29 222.6 0.9 173 173-374 90-284 (302)
75 2dpy_A FLII, flagellum-specifi 99.9 1.9E-25 6.6E-30 240.9 -9.7 191 148-383 130-342 (438)
76 2vf7_A UVRA2, excinuclease ABC 99.9 9.2E-22 3.2E-26 226.1 16.6 108 269-384 358-474 (842)
77 2og2_A Putative signal recogni 99.9 1.3E-23 4.4E-28 220.9 0.2 172 174-374 148-341 (359)
78 2o5v_A DNA replication and rep 99.9 1.7E-21 5.9E-26 204.9 15.3 86 290-383 259-354 (359)
79 3sop_A Neuronal-specific septi 99.9 1.8E-23 6.1E-28 211.9 -1.8 147 185-356 4-151 (270)
80 3qkt_A DNA double-strand break 99.9 3.2E-21 1.1E-25 201.2 14.5 78 291-370 244-327 (339)
81 1z6g_A Guanylate kinase; struc 99.9 6.5E-26 2.2E-30 222.3 -20.0 172 170-371 10-193 (218)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 5.8E-23 2E-27 213.9 0.8 131 172-374 160-292 (330)
83 3aez_A Pantothenate kinase; tr 99.8 3.2E-24 1.1E-28 221.8 -11.8 145 148-328 42-209 (312)
84 3pih_A Uvrabc system protein A 99.8 2.4E-21 8.3E-26 224.3 10.6 163 199-385 384-560 (916)
85 2jeo_A Uridine-cytidine kinase 99.8 1.4E-22 4.8E-27 201.5 -0.5 180 168-388 10-190 (245)
86 1cr0_A DNA primase/helicase; R 99.8 8.5E-22 2.9E-26 200.7 4.2 185 169-374 21-237 (296)
87 4ad8_A DNA repair protein RECN 99.8 1.3E-20 4.4E-25 207.3 13.1 78 292-372 393-473 (517)
88 2obl_A ESCN; ATPase, hydrolase 99.8 9.7E-22 3.3E-26 206.0 -1.0 191 149-383 45-253 (347)
89 2o8b_B DNA mismatch repair pro 99.8 4.5E-21 1.6E-25 225.2 2.9 172 149-381 750-938 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.8 1.3E-22 4.4E-27 223.7 -10.7 167 169-371 24-209 (525)
91 2r6f_A Excinuclease ABC subuni 99.8 2.2E-19 7.5E-24 207.2 14.2 135 242-384 450-599 (972)
92 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-19 3.8E-24 200.2 10.7 156 177-373 275-444 (525)
93 3thx_A DNA mismatch repair pro 99.8 1.2E-19 4.2E-24 210.9 9.9 160 169-383 648-811 (934)
94 2ygr_A Uvrabc system protein A 99.8 2.9E-19 9.9E-24 206.9 12.8 137 241-385 466-617 (993)
95 2eyu_A Twitching motility prot 99.8 3.4E-20 1.2E-24 187.0 3.1 132 171-371 15-147 (261)
96 2ehv_A Hypothetical protein PH 99.8 2.4E-20 8.4E-25 183.4 2.0 169 172-370 18-206 (251)
97 4a74_A DNA repair and recombin 99.8 3.2E-20 1.1E-24 180.4 2.2 159 172-373 13-201 (231)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.1E-19 2.4E-23 162.6 11.0 83 290-374 52-142 (148)
99 3asz_A Uridine kinase; cytidin 99.7 2.4E-21 8.2E-26 187.1 -11.3 146 180-356 3-162 (211)
100 2qnr_A Septin-2, protein NEDD5 99.7 4.6E-20 1.6E-24 189.5 -3.5 165 153-357 2-169 (301)
101 3thx_B DNA mismatch repair pro 99.7 1E-18 3.4E-23 202.8 5.8 155 169-376 659-816 (918)
102 3szr_A Interferon-induced GTP- 99.7 2.2E-20 7.5E-25 209.3 -8.5 192 149-385 10-237 (608)
103 1rj9_A FTSY, signal recognitio 99.7 3.1E-19 1.1E-23 183.8 0.8 148 182-356 101-259 (304)
104 1ewq_A DNA mismatch repair pro 99.7 8.1E-19 2.8E-23 200.5 3.5 146 169-377 565-716 (765)
105 1pzn_A RAD51, DNA repair and r 99.7 1.7E-19 5.7E-24 189.2 -2.6 167 171-380 118-310 (349)
106 2i3b_A HCR-ntpase, human cance 99.7 7.6E-20 2.6E-24 175.8 -6.3 156 183-378 1-169 (189)
107 1wb9_A DNA mismatch repair pro 99.7 1.8E-18 6.2E-23 198.6 2.8 157 169-379 594-752 (800)
108 3jvv_A Twitching mobility prot 99.7 3.4E-18 1.2E-22 179.6 3.4 128 179-372 119-246 (356)
109 2w0m_A SSO2452; RECA, SSPF, un 99.7 5.4E-18 1.9E-22 164.3 3.1 169 169-373 8-193 (235)
110 1pui_A ENGB, probable GTP-bind 99.7 2.9E-19 1E-23 171.2 -7.4 178 149-347 3-202 (210)
111 2qag_C Septin-7; cell cycle, c 99.7 1.3E-18 4.4E-23 186.4 -3.4 165 148-356 10-178 (418)
112 1nlf_A Regulatory protein REPA 99.7 1.5E-16 5.2E-21 160.7 9.3 150 179-356 26-182 (279)
113 1s96_A Guanylate kinase, GMP k 99.6 9.8E-18 3.3E-22 164.7 -2.0 153 174-389 7-164 (219)
114 2bdt_A BH3686; alpha-beta prot 99.6 3E-20 1E-24 176.5 -20.8 169 183-383 2-182 (189)
115 2cvh_A DNA repair and recombin 99.6 6.1E-16 2.1E-20 149.1 7.0 156 169-372 5-185 (220)
116 3kta_B Chromosome segregation 99.6 3.8E-15 1.3E-19 141.1 10.9 89 293-384 62-157 (173)
117 2qag_B Septin-6, protein NEDD5 99.6 7.2E-17 2.5E-21 172.7 -4.7 174 169-354 27-218 (427)
118 1zp6_A Hypothetical protein AT 99.5 2.9E-16 1E-20 148.6 -1.0 152 179-352 5-158 (191)
119 2ewv_A Twitching motility prot 99.5 7.9E-16 2.7E-20 162.6 1.6 132 171-370 126-257 (372)
120 1lw7_A Transcriptional regulat 99.5 1.8E-18 6.1E-23 182.0 -18.9 162 172-370 157-342 (365)
121 2bbw_A Adenylate kinase 4, AK4 99.5 1.1E-17 3.9E-22 165.8 -13.7 153 182-345 26-200 (246)
122 2gza_A Type IV secretion syste 99.5 4.3E-16 1.5E-20 163.9 -2.5 136 173-373 165-303 (361)
123 1nij_A Hypothetical protein YJ 99.5 7.5E-18 2.6E-22 174.2 -17.7 156 184-357 5-191 (318)
124 2yhs_A FTSY, cell division pro 99.5 1.7E-15 5.9E-20 164.3 -2.2 153 173-354 283-448 (503)
125 3auy_A DNA double-strand break 99.5 1.5E-13 5.2E-18 144.8 12.4 77 291-370 276-359 (371)
126 1n0w_A DNA repair protein RAD5 99.5 6.6E-14 2.3E-18 136.9 8.9 158 172-372 12-209 (243)
127 2f1r_A Molybdopterin-guanine d 99.5 1.9E-16 6.6E-21 149.7 -8.9 136 184-345 3-163 (171)
128 2rcn_A Probable GTPase ENGC; Y 99.5 3.5E-14 1.2E-18 148.9 6.1 123 172-310 205-328 (358)
129 3e70_C DPA, signal recognition 99.5 9.7E-15 3.3E-19 151.7 1.7 142 180-354 126-278 (328)
130 1htw_A HI0065; nucleotide-bind 99.4 5.3E-15 1.8E-19 138.0 -2.0 78 169-252 19-97 (158)
131 1odf_A YGR205W, hypothetical 3 99.4 1E-14 3.4E-19 149.1 -1.7 127 181-330 29-169 (290)
132 1w1w_A Structural maintenance 99.4 5.9E-13 2E-17 142.8 10.1 75 294-370 332-410 (430)
133 2qm8_A GTPase/ATPase; G protei 99.4 1.3E-15 4.3E-20 159.0 -11.5 175 150-343 30-260 (337)
134 3ec2_A DNA replication protein 99.4 2.5E-13 8.5E-18 127.7 4.5 49 310-358 97-146 (180)
135 2kjq_A DNAA-related protein; s 99.3 5.3E-13 1.8E-17 123.0 5.7 98 171-357 29-127 (149)
136 1p9r_A General secretion pathw 99.3 7.1E-16 2.4E-20 165.2 -16.9 137 169-319 155-315 (418)
137 1udx_A The GTP-binding protein 99.3 3.1E-14 1.1E-18 152.3 -4.1 168 173-364 147-317 (416)
138 1sxj_E Activator 1 40 kDa subu 99.3 9.9E-13 3.4E-17 136.1 6.7 183 186-411 39-229 (354)
139 3c8u_A Fructokinase; YP_612366 99.3 1.8E-14 6.3E-19 139.2 -7.3 165 180-388 19-184 (208)
140 2yv5_A YJEQ protein; hydrolase 99.3 1.6E-13 5.4E-18 140.9 -1.2 121 180-309 162-301 (302)
141 3lda_A DNA repair protein RAD5 99.3 7.8E-12 2.7E-16 133.2 11.8 72 302-373 260-364 (400)
142 1lvg_A Guanylate kinase, GMP k 99.3 5.3E-16 1.8E-20 149.4 -19.9 156 181-371 2-173 (198)
143 2oap_1 GSPE-2, type II secreti 99.3 5.2E-15 1.8E-19 162.3 -14.8 176 170-363 247-457 (511)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.9E-14 6.4E-19 152.8 -17.4 169 179-381 16-209 (392)
145 2x8a_A Nuclear valosin-contain 99.1 1.4E-14 4.8E-19 146.7 -19.3 142 169-338 32-190 (274)
146 1u0l_A Probable GTPase ENGC; p 99.1 2.8E-12 9.5E-17 131.4 -3.0 106 179-298 165-294 (301)
147 1in4_A RUVB, holliday junction 99.1 3.7E-13 1.3E-17 139.7 -10.7 151 169-343 30-194 (334)
148 2dr3_A UPF0273 protein PH0284; 99.1 1.2E-11 4E-16 120.9 -1.0 68 304-371 117-196 (247)
149 1t9h_A YLOQ, probable GTPase E 99.0 1.5E-11 5E-16 126.6 -1.5 118 178-303 168-303 (307)
150 1vma_A Cell division protein F 99.0 1.6E-10 5.6E-15 118.8 5.4 113 176-342 97-212 (306)
151 1sq5_A Pantothenate kinase; P- 99.0 1.7E-11 5.9E-16 125.9 -2.1 97 149-256 37-155 (308)
152 2zr9_A Protein RECA, recombina 98.9 1.3E-09 4.4E-14 114.1 8.9 155 171-379 47-237 (349)
153 2ius_A DNA translocase FTSK; n 98.9 3.7E-11 1.3E-15 131.4 -3.0 166 175-356 159-343 (512)
154 2r6a_A DNAB helicase, replicat 98.9 2.7E-09 9.3E-14 115.2 11.5 181 169-374 189-401 (454)
155 1ls1_A Signal recognition part 98.9 2.1E-09 7.1E-14 109.9 9.7 118 174-341 91-209 (295)
156 3tr0_A Guanylate kinase, GMP k 98.9 8.1E-11 2.8E-15 112.1 -2.7 68 177-250 1-72 (205)
157 2px0_A Flagellar biosynthesis 98.9 1.8E-09 6E-14 110.5 7.0 140 181-377 103-247 (296)
158 1oix_A RAS-related protein RAB 98.9 3.3E-10 1.1E-14 107.2 1.4 143 185-341 31-189 (191)
159 1iy2_A ATP-dependent metallopr 98.9 1.3E-12 4.3E-17 131.7 -16.3 124 169-316 61-190 (278)
160 3euj_A Chromosome partition pr 98.9 6.2E-10 2.1E-14 120.9 3.5 52 170-224 17-68 (483)
161 1ixz_A ATP-dependent metallopr 98.9 1.8E-12 6.2E-17 128.5 -15.9 123 170-316 38-166 (254)
162 3k1j_A LON protease, ATP-depen 98.8 5.9E-11 2E-15 132.8 -6.2 160 169-340 46-227 (604)
163 1qhl_A Protein (cell division 98.7 6.1E-10 2.1E-14 109.7 -3.9 72 148-237 8-91 (227)
164 3lnc_A Guanylate kinase, GMP k 98.7 4.1E-10 1.4E-14 110.1 -5.6 38 170-207 14-52 (231)
165 2f9l_A RAB11B, member RAS onco 98.6 7.5E-09 2.6E-13 98.1 1.9 38 303-342 129-166 (199)
166 3hr8_A Protein RECA; alpha and 98.6 2.4E-08 8.1E-13 104.7 5.5 79 171-251 47-129 (356)
167 2ce7_A Cell division protein F 98.6 4.4E-08 1.5E-12 106.4 7.5 59 298-356 93-165 (476)
168 4eun_A Thermoresistant glucoki 98.6 2.4E-09 8.2E-14 102.4 -3.5 68 177-250 23-93 (200)
169 1svm_A Large T antigen; AAA+ f 98.5 1.9E-10 6.5E-15 121.5 -13.9 144 170-324 156-312 (377)
170 2qtf_A Protein HFLX, GTP-bindi 98.5 1.8E-08 6.3E-13 105.8 0.5 148 185-343 181-353 (364)
171 3uie_A Adenylyl-sulfate kinase 98.4 3.7E-09 1.3E-13 101.1 -5.9 55 169-226 11-67 (200)
172 3kta_A Chromosome segregation 98.4 2.1E-07 7.3E-12 86.8 4.7 37 171-208 13-51 (182)
173 3nwj_A ATSK2; P loop, shikimat 98.4 2.8E-08 9.4E-13 99.2 -1.6 52 149-207 17-72 (250)
174 4a1f_A DNAB helicase, replicat 98.4 2.7E-07 9.1E-12 96.0 5.3 131 169-353 32-164 (338)
175 2j41_A Guanylate kinase; GMP, 98.3 1.1E-07 3.9E-12 90.1 1.9 30 178-207 1-30 (207)
176 2xau_A PRE-mRNA-splicing facto 98.3 6.6E-07 2.2E-11 102.8 7.5 72 293-365 188-261 (773)
177 3vaa_A Shikimate kinase, SK; s 98.3 2.6E-07 9E-12 88.0 3.5 43 165-207 7-49 (199)
178 1zu4_A FTSY; GTPase, signal re 98.3 1E-07 3.6E-12 98.4 0.6 78 172-251 94-185 (320)
179 4e22_A Cytidylate kinase; P-lo 98.3 5.2E-08 1.8E-12 96.8 -1.8 63 171-238 18-96 (252)
180 2dhr_A FTSH; AAA+ protein, hex 98.2 4.2E-09 1.5E-13 115.0 -11.8 129 170-324 53-187 (499)
181 1jjv_A Dephospho-COA kinase; P 98.2 1.7E-07 5.9E-12 89.3 0.7 127 185-370 4-131 (206)
182 2e87_A Hypothetical protein PH 98.2 1.3E-06 4.4E-11 91.1 6.7 61 294-356 230-293 (357)
183 3t34_A Dynamin-related protein 98.2 6.1E-06 2.1E-10 86.0 10.8 159 170-353 24-212 (360)
184 2z4s_A Chromosomal replication 98.1 1.8E-06 6E-11 92.9 5.6 98 312-411 193-298 (440)
185 1kgd_A CASK, peripheral plasma 98.1 6.3E-07 2.2E-11 84.1 1.4 37 181-218 3-39 (180)
186 1fnn_A CDC6P, cell division co 98.0 1.1E-05 3.8E-10 83.5 9.8 44 312-356 124-170 (389)
187 1knq_A Gluconate kinase; ALFA/ 98.0 1.8E-07 6.1E-12 86.8 -3.6 38 181-224 6-43 (175)
188 2dy1_A Elongation factor G; tr 98.0 1.9E-06 6.4E-11 97.4 4.0 131 177-356 3-137 (665)
189 1v5w_A DMC1, meiotic recombina 98.0 2.2E-05 7.7E-10 81.5 11.6 144 173-354 111-273 (343)
190 2vp4_A Deoxynucleoside kinase; 97.9 2.2E-06 7.7E-11 83.6 2.2 40 178-223 15-54 (230)
191 3bh0_A DNAB-like replicative h 97.9 9E-06 3.1E-10 83.4 6.8 134 169-354 54-190 (315)
192 2z43_A DNA repair and recombin 97.9 4.6E-05 1.6E-09 78.3 11.7 145 172-354 95-257 (324)
193 3a00_A Guanylate kinase, GMP k 97.9 3.4E-06 1.2E-10 79.4 2.8 25 183-207 1-25 (186)
194 3b9p_A CG5977-PA, isoform A; A 97.9 5.1E-05 1.8E-09 76.1 11.4 73 297-369 97-186 (297)
195 3tau_A Guanylate kinase, GMP k 97.9 4.3E-06 1.5E-10 80.3 2.6 27 181-207 6-32 (208)
196 2qt1_A Nicotinamide riboside k 97.8 9.2E-06 3.2E-10 77.4 4.3 45 178-243 16-60 (207)
197 1ega_A Protein (GTP-binding pr 97.8 1.6E-05 5.4E-10 81.1 5.1 63 296-366 101-169 (301)
198 3ney_A 55 kDa erythrocyte memb 97.8 9.1E-06 3.1E-10 78.1 3.0 28 180-207 16-43 (197)
199 3kl4_A SRP54, signal recogniti 97.7 6.4E-05 2.2E-09 80.6 8.5 35 182-218 96-130 (433)
200 1rz3_A Hypothetical protein rb 97.7 7.2E-06 2.5E-10 78.2 0.7 41 180-222 19-59 (201)
201 1cke_A CK, MSSA, protein (cyti 97.7 2.3E-06 7.9E-11 82.4 -3.3 56 183-238 5-74 (227)
202 3tqc_A Pantothenate kinase; bi 97.6 3.4E-06 1.2E-10 87.1 -2.5 59 169-242 72-136 (321)
203 3cr8_A Sulfate adenylyltranfer 97.6 5.4E-06 1.8E-10 91.6 -1.3 43 179-223 365-409 (552)
204 3llm_A ATP-dependent RNA helic 97.6 1.3E-05 4.4E-10 78.3 1.3 153 180-364 73-228 (235)
205 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 7E-05 2.4E-09 68.3 5.9 31 174-205 15-45 (149)
206 3cf0_A Transitional endoplasmi 97.6 0.00011 3.8E-09 74.5 7.8 29 179-207 45-73 (301)
207 2pez_A Bifunctional 3'-phospho 97.6 6.5E-06 2.2E-10 76.6 -1.3 40 181-223 3-44 (179)
208 1kag_A SKI, shikimate kinase I 97.5 2.9E-05 1E-09 71.3 2.5 26 182-207 3-28 (173)
209 2qby_A CDC6 homolog 1, cell di 97.5 3.4E-05 1.2E-09 79.4 2.6 27 181-207 43-69 (386)
210 3ice_A Transcription terminati 97.4 1.2E-05 4E-10 84.8 -1.6 51 149-206 133-197 (422)
211 1ypw_A Transitional endoplasmi 97.4 0.00012 4.2E-09 84.4 5.4 30 178-207 233-262 (806)
212 1u94_A RECA protein, recombina 97.3 0.00053 1.8E-08 71.6 9.6 35 171-205 49-85 (356)
213 3lxx_A GTPase IMAP family memb 97.3 0.0012 4E-08 64.1 11.2 23 185-207 31-53 (239)
214 1w1w_A Structural maintenance 97.3 0.00011 3.7E-09 78.4 3.6 30 178-207 21-50 (430)
215 2p67_A LAO/AO transport system 97.3 1.9E-05 6.6E-10 81.8 -2.2 51 169-221 42-92 (341)
216 3qks_A DNA double-strand break 97.3 0.00028 9.5E-09 67.6 5.9 31 174-205 15-45 (203)
217 1mky_A Probable GTP-binding pr 97.2 0.00023 7.9E-09 76.1 5.7 69 184-252 181-263 (439)
218 3m6a_A ATP-dependent protease 97.2 4.5E-05 1.5E-09 84.1 -0.2 50 170-222 96-145 (543)
219 3bos_A Putative DNA replicatio 97.2 0.00019 6.7E-09 68.6 4.2 45 312-356 103-149 (242)
220 4eaq_A DTMP kinase, thymidylat 97.2 0.00016 5.3E-09 70.8 3.5 36 172-207 12-50 (229)
221 1l8q_A Chromosomal replication 97.1 0.0009 3.1E-08 68.0 8.1 45 311-355 96-141 (324)
222 3h4m_A Proteasome-activating n 97.1 0.00059 2E-08 67.8 6.5 27 180-206 48-74 (285)
223 2i1q_A DNA repair and recombin 97.1 0.0017 5.8E-08 66.2 10.1 34 172-205 86-120 (322)
224 2w58_A DNAI, primosome compone 97.1 0.00068 2.3E-08 63.8 6.4 24 184-207 55-78 (202)
225 2www_A Methylmalonic aciduria 97.1 0.00013 4.4E-09 75.9 1.4 41 181-223 72-112 (349)
226 3bgw_A DNAB-like replicative h 97.1 0.0018 6.1E-08 69.5 10.3 36 170-205 184-219 (444)
227 1y63_A LMAJ004144AAA protein; 97.0 0.00026 8.8E-09 66.3 3.0 32 175-206 2-33 (184)
228 2qor_A Guanylate kinase; phosp 97.0 0.00029 9.9E-09 67.0 3.1 29 179-207 8-36 (204)
229 2q6t_A DNAB replication FORK h 96.9 0.0023 7.8E-08 68.5 9.8 132 169-353 186-318 (444)
230 1m7g_A Adenylylsulfate kinase; 96.9 0.00022 7.6E-09 68.1 1.4 43 178-222 20-64 (211)
231 2b8t_A Thymidine kinase; deoxy 96.9 0.0025 8.6E-08 62.2 8.8 53 313-370 89-150 (223)
232 3auy_A DNA double-strand break 96.9 0.00088 3E-08 70.0 5.8 31 173-204 16-46 (371)
233 2gj8_A MNME, tRNA modification 96.9 0.0005 1.7E-08 63.2 3.4 26 181-206 2-27 (172)
234 3d8b_A Fidgetin-like protein 1 96.9 0.0049 1.7E-07 63.9 11.3 26 181-206 115-140 (357)
235 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0046 1.6E-07 60.2 10.1 26 181-206 37-62 (262)
236 1f6b_A SAR1; gtpases, N-termin 96.8 0.00026 9.1E-09 66.7 1.0 37 169-206 12-48 (198)
237 2ffh_A Protein (FFH); SRP54, s 96.8 0.00029 9.9E-09 75.3 1.4 47 174-224 91-137 (425)
238 2if2_A Dephospho-COA kinase; a 96.8 0.00052 1.8E-08 64.7 3.0 21 185-205 3-23 (204)
239 1m2o_B GTP-binding protein SAR 96.8 0.00059 2E-08 63.7 3.1 35 171-206 12-46 (190)
240 2qag_A Septin-2, protein NEDD5 96.7 0.00011 3.7E-09 76.9 -2.8 46 147-206 15-60 (361)
241 2p5t_B PEZT; postsegregational 96.7 0.00042 1.4E-08 68.4 1.4 47 172-223 22-68 (253)
242 3cm0_A Adenylate kinase; ATP-b 96.6 0.00098 3.4E-08 61.7 3.5 25 181-205 2-26 (186)
243 2yvu_A Probable adenylyl-sulfa 96.6 0.0011 3.7E-08 61.8 3.6 27 181-207 11-37 (186)
244 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00024 8.3E-09 74.1 -1.2 37 171-207 10-48 (359)
245 2wji_A Ferrous iron transport 96.6 0.0012 4E-08 60.0 3.5 22 185-206 5-26 (165)
246 3t61_A Gluconokinase; PSI-biol 96.5 0.00098 3.3E-08 62.9 2.9 24 183-206 18-41 (202)
247 1j8m_F SRP54, signal recogniti 96.5 0.00025 8.5E-09 72.2 -1.4 47 174-223 89-136 (297)
248 3lxw_A GTPase IMAP family memb 96.5 0.0052 1.8E-07 60.3 8.2 56 298-354 87-148 (247)
249 3cmw_A Protein RECA, recombina 96.5 0.008 2.7E-07 73.9 11.3 27 179-205 728-754 (1706)
250 1qhx_A CPT, protein (chloramph 96.5 0.0015 5.1E-08 60.0 3.7 25 183-207 3-27 (178)
251 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.9E-08 59.4 3.4 22 185-206 3-24 (173)
252 2v1u_A Cell division control p 96.4 0.0022 7.6E-08 65.7 4.8 26 181-206 42-67 (387)
253 1sxj_C Activator 1 40 kDa subu 96.4 0.00036 1.2E-08 71.7 -1.4 39 169-207 30-70 (340)
254 1lv7_A FTSH; alpha/beta domain 96.3 0.0012 4.2E-08 64.7 2.3 34 172-207 36-69 (257)
255 1q3t_A Cytidylate kinase; nucl 96.3 0.0018 6.3E-08 62.8 3.5 27 180-206 13-39 (236)
256 1kht_A Adenylate kinase; phosp 96.3 0.0021 7.1E-08 59.4 3.6 24 183-206 3-26 (192)
257 2wjg_A FEOB, ferrous iron tran 96.3 0.002 7E-08 59.1 3.5 22 185-206 9-30 (188)
258 2zej_A Dardarin, leucine-rich 96.3 0.002 7E-08 59.5 3.3 22 185-206 4-25 (184)
259 2rhm_A Putative kinase; P-loop 96.3 0.0019 6.6E-08 59.9 3.1 25 181-205 3-27 (193)
260 1np6_A Molybdopterin-guanine d 96.2 0.0023 7.9E-08 59.9 3.3 38 184-221 7-45 (174)
261 3lw7_A Adenylate kinase relate 96.2 0.0025 8.4E-08 57.5 3.3 19 185-203 3-21 (179)
262 1xp8_A RECA protein, recombina 96.2 0.043 1.5E-06 57.3 13.2 27 179-205 70-96 (366)
263 2r8r_A Sensor protein; KDPD, P 96.2 0.0033 1.1E-07 61.5 4.3 77 306-389 77-175 (228)
264 1q57_A DNA primase/helicase; d 96.2 0.086 2.9E-06 57.0 15.9 35 171-205 230-264 (503)
265 3r20_A Cytidylate kinase; stru 96.2 0.0026 8.8E-08 62.5 3.5 24 183-206 9-32 (233)
266 3trf_A Shikimate kinase, SK; a 96.1 0.003 1E-07 58.3 3.5 25 182-206 4-28 (185)
267 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0027 9.4E-08 67.1 3.5 43 179-221 18-69 (396)
268 1gvn_B Zeta; postsegregational 96.1 0.003 1E-07 63.7 3.7 36 181-220 31-66 (287)
269 2ze6_A Isopentenyl transferase 96.1 0.003 1E-07 62.4 3.5 24 184-207 2-25 (253)
270 1ex7_A Guanylate kinase; subst 96.1 0.0029 9.9E-08 60.0 3.2 22 185-206 3-24 (186)
271 2jaq_A Deoxyguanosine kinase; 96.1 0.0032 1.1E-07 58.8 3.5 23 185-207 2-24 (205)
272 2plr_A DTMP kinase, probable t 96.0 0.0037 1.3E-07 58.6 3.8 26 182-207 3-28 (213)
273 1vht_A Dephospho-COA kinase; s 96.0 0.0037 1.3E-07 59.6 3.8 24 182-205 3-26 (218)
274 2v54_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 58.6 3.7 26 182-207 3-28 (204)
275 1ly1_A Polynucleotide kinase; 96.0 0.0039 1.3E-07 56.9 3.6 22 184-205 3-24 (181)
276 3iij_A Coilin-interacting nucl 96.0 0.0033 1.1E-07 57.9 3.1 24 182-205 10-33 (180)
277 3vfd_A Spastin; ATPase, microt 95.9 0.039 1.3E-06 57.6 11.3 26 181-206 146-171 (389)
278 2wwf_A Thymidilate kinase, put 95.9 0.0042 1.4E-07 58.5 3.4 26 181-206 8-33 (212)
279 2c95_A Adenylate kinase 1; tra 95.9 0.004 1.4E-07 57.8 3.2 25 181-205 7-31 (196)
280 1gtv_A TMK, thymidylate kinase 95.9 0.002 6.9E-08 60.8 1.1 23 185-207 2-24 (214)
281 1via_A Shikimate kinase; struc 95.8 0.0043 1.5E-07 57.0 3.2 22 185-206 6-27 (175)
282 1nn5_A Similar to deoxythymidy 95.8 0.0046 1.6E-07 58.3 3.4 27 180-206 6-32 (215)
283 3ihw_A Centg3; RAS, centaurin, 95.8 0.0087 3E-07 55.4 5.2 22 185-206 22-43 (184)
284 1uf9_A TT1252 protein; P-loop, 95.8 0.0051 1.7E-07 57.4 3.5 22 184-205 9-30 (203)
285 1tev_A UMP-CMP kinase; ploop, 95.8 0.0055 1.9E-07 56.6 3.7 24 182-205 2-25 (196)
286 1nks_A Adenylate kinase; therm 95.7 0.0047 1.6E-07 56.9 3.2 23 185-207 3-25 (194)
287 1xx6_A Thymidine kinase; NESG, 95.7 0.024 8.3E-07 53.7 7.9 53 313-370 81-142 (191)
288 3cmu_A Protein RECA, recombina 95.7 0.026 8.8E-07 70.4 10.0 150 171-374 369-554 (2050)
289 2bwj_A Adenylate kinase 5; pho 95.6 0.005 1.7E-07 57.3 2.7 25 181-205 10-34 (199)
290 3k53_A Ferrous iron transport 95.6 0.0057 1.9E-07 60.7 3.2 22 185-206 5-26 (271)
291 1aky_A Adenylate kinase; ATP:A 95.5 0.0073 2.5E-07 57.7 3.7 25 182-206 3-27 (220)
292 2vli_A Antibiotic resistance p 95.5 0.0048 1.6E-07 56.7 2.3 25 182-206 4-28 (183)
293 2z0h_A DTMP kinase, thymidylat 95.5 0.0076 2.6E-07 55.9 3.4 23 185-207 2-24 (197)
294 2ged_A SR-beta, signal recogni 95.4 0.0079 2.7E-07 55.4 3.3 23 184-206 49-71 (193)
295 1ko7_A HPR kinase/phosphatase; 95.4 0.012 4.3E-07 60.2 5.0 36 170-206 132-167 (314)
296 3cmw_A Protein RECA, recombina 95.4 0.041 1.4E-06 67.8 10.2 153 171-377 369-557 (1706)
297 1xjc_A MOBB protein homolog; s 95.4 0.0087 3E-07 55.8 3.5 24 184-207 5-28 (169)
298 1zd8_A GTP:AMP phosphotransfer 95.3 0.0081 2.8E-07 57.7 3.3 25 181-205 5-29 (227)
299 3co5_A Putative two-component 95.3 0.027 9.1E-07 50.2 6.4 42 313-355 75-116 (143)
300 1z2a_A RAS-related protein RAB 95.3 0.0082 2.8E-07 53.5 3.0 23 185-207 7-29 (168)
301 2nzj_A GTP-binding protein REM 95.3 0.009 3.1E-07 53.7 3.3 22 185-206 6-27 (175)
302 2cdn_A Adenylate kinase; phosp 95.3 0.01 3.4E-07 55.8 3.7 23 183-205 20-42 (201)
303 3fb4_A Adenylate kinase; psych 95.3 0.0093 3.2E-07 56.5 3.4 21 185-205 2-22 (216)
304 2erx_A GTP-binding protein DI- 95.3 0.0094 3.2E-07 53.2 3.3 22 185-206 5-26 (172)
305 3ake_A Cytidylate kinase; CMP 95.3 0.0096 3.3E-07 55.7 3.4 22 185-206 4-25 (208)
306 3q72_A GTP-binding protein RAD 95.2 0.0076 2.6E-07 53.8 2.5 23 185-207 4-26 (166)
307 1kao_A RAP2A; GTP-binding prot 95.2 0.0093 3.2E-07 52.9 3.1 22 185-206 5-26 (167)
308 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 54.8 3.4 22 185-206 2-23 (195)
309 1u8z_A RAS-related protein RAL 95.2 0.0095 3.3E-07 52.8 3.0 22 185-206 6-27 (168)
310 2dyk_A GTP-binding protein; GT 95.2 0.011 3.6E-07 52.4 3.3 22 185-206 3-24 (161)
311 2ce2_X GTPase HRAS; signaling 95.2 0.0087 3E-07 52.9 2.7 22 185-206 5-26 (166)
312 1zak_A Adenylate kinase; ATP:A 95.2 0.0084 2.9E-07 57.3 2.8 25 182-206 4-28 (222)
313 3q85_A GTP-binding protein REM 95.2 0.01 3.5E-07 53.1 3.2 22 185-206 4-25 (169)
314 1ukz_A Uridylate kinase; trans 95.2 0.011 3.8E-07 55.4 3.6 23 183-205 15-37 (203)
315 1e6c_A Shikimate kinase; phosp 95.2 0.0093 3.2E-07 54.2 2.9 23 184-206 3-25 (173)
316 3a4m_A L-seryl-tRNA(SEC) kinas 95.1 0.012 4E-07 58.1 3.8 25 182-206 3-27 (260)
317 1qf9_A UMP/CMP kinase, protein 95.1 0.011 3.8E-07 54.4 3.4 23 183-205 6-28 (194)
318 1z0j_A RAB-22, RAS-related pro 95.1 0.01 3.5E-07 53.0 3.1 23 185-207 8-30 (170)
319 1zuh_A Shikimate kinase; alpha 95.1 0.012 4E-07 53.5 3.5 23 184-206 8-30 (168)
320 3dl0_A Adenylate kinase; phosp 95.1 0.011 3.8E-07 56.1 3.4 22 185-206 2-23 (216)
321 3tw8_B RAS-related protein RAB 95.1 0.0098 3.3E-07 53.7 2.9 22 185-206 11-32 (181)
322 1ek0_A Protein (GTP-binding pr 95.1 0.01 3.6E-07 52.8 3.0 23 185-207 5-27 (170)
323 2pt5_A Shikimate kinase, SK; a 95.1 0.012 4.1E-07 53.2 3.5 21 185-205 2-22 (168)
324 1z08_A RAS-related protein RAB 95.1 0.011 3.6E-07 53.0 3.1 22 185-206 8-29 (170)
325 3b1v_A Ferrous iron uptake tra 95.1 0.011 3.8E-07 59.1 3.5 22 185-206 5-26 (272)
326 4ag6_A VIRB4 ATPase, type IV s 95.1 0.0069 2.3E-07 63.4 2.0 45 313-357 262-309 (392)
327 1ky3_A GTP-binding protein YPT 95.1 0.011 3.7E-07 53.4 3.1 23 185-207 10-32 (182)
328 1c1y_A RAS-related protein RAP 95.1 0.011 3.7E-07 52.6 3.0 22 185-206 5-26 (167)
329 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.011 3.8E-07 53.3 3.1 22 185-206 9-30 (177)
330 1g16_A RAS-related protein SEC 95.1 0.0099 3.4E-07 53.1 2.7 23 185-207 5-27 (170)
331 2lkc_A Translation initiation 95.0 0.014 4.8E-07 52.7 3.7 24 183-206 8-31 (178)
332 2iyv_A Shikimate kinase, SK; t 95.0 0.0099 3.4E-07 54.8 2.7 22 184-205 3-24 (184)
333 1fzq_A ADP-ribosylation factor 95.0 0.01 3.6E-07 54.5 2.8 22 185-206 18-39 (181)
334 1svi_A GTP-binding protein YSX 95.0 0.012 3.9E-07 54.3 3.0 22 185-206 25-46 (195)
335 3tlx_A Adenylate kinase 2; str 94.9 0.014 4.9E-07 57.0 3.7 24 182-205 28-51 (243)
336 3pqc_A Probable GTP-binding pr 94.9 0.012 4E-07 53.9 3.0 22 185-206 25-46 (195)
337 2fn4_A P23, RAS-related protei 94.9 0.011 3.9E-07 53.2 2.8 22 185-206 11-32 (181)
338 3clv_A RAB5 protein, putative; 94.9 0.013 4.3E-07 53.8 3.1 22 185-206 9-30 (208)
339 3t1o_A Gliding protein MGLA; G 94.9 0.013 4.6E-07 53.6 3.2 23 185-207 16-38 (198)
340 1r2q_A RAS-related protein RAB 94.9 0.013 4.4E-07 52.2 3.0 22 185-206 8-29 (170)
341 4dsu_A GTPase KRAS, isoform 2B 94.9 0.013 4.5E-07 53.3 3.1 23 185-207 6-28 (189)
342 2hxs_A RAB-26, RAS-related pro 94.8 0.015 5E-07 52.5 3.3 22 185-206 8-29 (178)
343 2cxx_A Probable GTP-binding pr 94.8 0.012 4.1E-07 53.7 2.7 22 185-206 3-24 (190)
344 3bc1_A RAS-related protein RAB 94.8 0.013 4.6E-07 53.3 3.0 22 185-206 13-34 (195)
345 1upt_A ARL1, ADP-ribosylation 94.8 0.014 4.7E-07 52.2 3.0 22 185-206 9-30 (171)
346 2oil_A CATX-8, RAS-related pro 94.8 0.014 4.7E-07 53.8 3.0 23 185-207 27-49 (193)
347 3dm5_A SRP54, signal recogniti 94.8 0.28 9.7E-06 52.4 13.6 26 182-207 99-124 (443)
348 1jal_A YCHF protein; nucleotid 94.8 0.024 8.3E-07 59.2 5.2 38 183-220 2-48 (363)
349 1r8s_A ADP-ribosylation factor 94.8 0.015 5.1E-07 51.8 3.0 22 185-206 2-23 (164)
350 3a8t_A Adenylate isopentenyltr 94.7 0.024 8.1E-07 58.7 4.9 26 182-207 39-64 (339)
351 1uj2_A Uridine-cytidine kinase 94.7 0.016 5.5E-07 56.7 3.4 24 184-207 23-46 (252)
352 2y8e_A RAB-protein 6, GH09086P 94.7 0.014 4.8E-07 52.5 2.7 22 185-206 16-37 (179)
353 2a9k_A RAS-related protein RAL 94.7 0.016 5.3E-07 52.6 3.0 22 185-206 20-41 (187)
354 2g6b_A RAS-related protein RAB 94.7 0.016 5.3E-07 52.5 3.0 23 185-207 12-34 (180)
355 1moz_A ARL1, ADP-ribosylation 94.7 0.0096 3.3E-07 54.1 1.6 23 183-205 18-40 (183)
356 1z0f_A RAB14, member RAS oncog 94.6 0.016 5.5E-07 52.1 3.0 23 185-207 17-39 (179)
357 2xb4_A Adenylate kinase; ATP-b 94.6 0.018 6.2E-07 55.3 3.5 21 185-205 2-22 (223)
358 2grj_A Dephospho-COA kinase; T 94.6 0.018 6.3E-07 54.5 3.4 22 184-205 13-34 (192)
359 2efe_B Small GTP-binding prote 94.6 0.017 5.8E-07 52.3 3.1 22 185-206 14-35 (181)
360 1jbk_A CLPB protein; beta barr 94.6 0.021 7.1E-07 51.7 3.6 27 181-207 41-67 (195)
361 2orv_A Thymidine kinase; TP4A 94.6 0.094 3.2E-06 51.3 8.4 53 312-370 89-150 (234)
362 3be4_A Adenylate kinase; malar 94.6 0.017 5.9E-07 55.1 3.2 24 183-206 5-28 (217)
363 3con_A GTPase NRAS; structural 94.6 0.019 6.3E-07 52.7 3.3 23 185-207 23-45 (190)
364 4fcw_A Chaperone protein CLPB; 94.5 0.02 6.7E-07 57.2 3.6 24 184-207 48-71 (311)
365 1nrj_B SR-beta, signal recogni 94.5 0.019 6.4E-07 54.1 3.3 23 185-207 14-36 (218)
366 2qmh_A HPR kinase/phosphorylas 94.5 0.034 1.2E-06 53.3 5.0 36 170-206 22-57 (205)
367 2bov_A RAla, RAS-related prote 94.5 0.018 6.2E-07 53.3 3.0 23 185-207 16-38 (206)
368 2bme_A RAB4A, RAS-related prot 94.5 0.017 5.8E-07 52.6 2.7 23 185-207 12-34 (186)
369 3iby_A Ferrous iron transport 94.5 0.018 6.3E-07 56.8 3.2 22 185-206 3-24 (256)
370 1wf3_A GTP-binding protein; GT 94.5 0.02 6.7E-07 58.1 3.5 22 185-206 9-30 (301)
371 1vg8_A RAS-related protein RAB 94.4 0.019 6.5E-07 53.4 3.1 23 185-207 10-32 (207)
372 3tkl_A RAS-related protein RAB 94.4 0.019 6.5E-07 52.7 3.0 23 185-207 18-40 (196)
373 3t5d_A Septin-7; GTP-binding p 94.4 0.016 5.4E-07 57.6 2.6 22 185-206 10-31 (274)
374 2gf9_A RAS-related protein RAB 94.4 0.019 6.5E-07 52.8 3.0 23 185-207 24-46 (189)
375 1ksh_A ARF-like protein 2; sma 94.4 0.019 6.6E-07 52.4 3.0 25 182-206 17-41 (186)
376 2f6r_A COA synthase, bifunctio 94.4 0.019 6.6E-07 57.5 3.2 22 184-205 76-97 (281)
377 3cbq_A GTP-binding protein REM 94.4 0.017 5.7E-07 54.0 2.5 21 185-205 25-45 (195)
378 1e4v_A Adenylate kinase; trans 94.4 0.02 6.9E-07 54.4 3.1 21 185-205 2-22 (214)
379 2gf0_A GTP-binding protein DI- 94.4 0.018 6.3E-07 53.0 2.8 22 185-206 10-31 (199)
380 3kkq_A RAS-related protein M-R 94.3 0.021 7E-07 52.0 3.0 23 185-207 20-42 (183)
381 4edh_A DTMP kinase, thymidylat 94.3 0.025 8.7E-07 54.4 3.8 27 181-207 4-30 (213)
382 1m7b_A RND3/RHOE small GTP-bin 94.3 0.019 6.4E-07 52.7 2.7 22 185-206 9-30 (184)
383 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.021 7.1E-07 51.8 3.0 22 185-206 7-28 (186)
384 3iev_A GTP-binding protein ERA 94.3 0.022 7.5E-07 57.8 3.5 22 185-206 12-33 (308)
385 3v9p_A DTMP kinase, thymidylat 94.3 0.019 6.4E-07 56.1 2.8 28 180-207 22-49 (227)
386 1ltq_A Polynucleotide kinase; 94.3 0.023 7.9E-07 56.7 3.6 22 184-205 3-24 (301)
387 3umf_A Adenylate kinase; rossm 94.3 0.025 8.4E-07 54.8 3.6 27 180-206 26-52 (217)
388 2fg5_A RAB-22B, RAS-related pr 94.3 0.019 6.7E-07 53.0 2.8 23 185-207 25-47 (192)
389 1zbd_A Rabphilin-3A; G protein 94.3 0.023 7.7E-07 52.8 3.2 23 185-207 10-32 (203)
390 2dby_A GTP-binding protein; GD 94.3 0.019 6.6E-07 60.0 3.0 22 185-206 3-24 (368)
391 2xtp_A GTPase IMAP family memb 94.3 0.022 7.4E-07 55.7 3.2 22 185-206 24-45 (260)
392 1a7j_A Phosphoribulokinase; tr 94.3 0.012 4.1E-07 59.4 1.4 24 182-205 4-27 (290)
393 1ak2_A Adenylate kinase isoenz 94.2 0.026 8.9E-07 54.4 3.7 24 183-206 16-39 (233)
394 3bwd_D RAC-like GTP-binding pr 94.2 0.027 9.2E-07 50.9 3.6 22 185-206 10-31 (182)
395 1z06_A RAS-related protein RAB 94.2 0.023 7.8E-07 52.2 3.1 22 185-206 22-43 (189)
396 2wsm_A Hydrogenase expression/ 94.2 0.022 7.6E-07 53.8 3.0 23 184-206 31-53 (221)
397 3a1s_A Iron(II) transport prot 94.2 0.026 8.8E-07 55.8 3.5 22 185-206 7-28 (258)
398 3llu_A RAS-related GTP-binding 94.2 0.023 7.8E-07 52.8 3.0 23 185-207 22-44 (196)
399 2cjw_A GTP-binding protein GEM 94.2 0.025 8.6E-07 52.6 3.3 21 185-205 8-28 (192)
400 2a5j_A RAS-related protein RAB 94.1 0.024 8.2E-07 52.3 3.0 22 185-206 23-44 (191)
401 2il1_A RAB12; G-protein, GDP, 94.1 0.022 7.6E-07 52.7 2.8 22 185-206 28-49 (192)
402 3oes_A GTPase rhebl1; small GT 94.1 0.021 7.3E-07 53.2 2.7 23 185-207 26-48 (201)
403 4dhe_A Probable GTP-binding pr 94.1 0.014 4.7E-07 55.2 1.4 22 185-206 31-52 (223)
404 3t5g_A GTP-binding protein RHE 94.1 0.022 7.6E-07 51.7 2.7 22 185-206 8-29 (181)
405 1x3s_A RAS-related protein RAB 94.1 0.024 8.3E-07 51.9 3.0 23 185-207 17-39 (195)
406 3dz8_A RAS-related protein RAB 94.1 0.022 7.6E-07 52.5 2.7 23 185-207 25-47 (191)
407 2j9r_A Thymidine kinase; TK1, 94.1 0.12 4.1E-06 49.9 7.9 53 313-370 101-162 (214)
408 3zvl_A Bifunctional polynucleo 94.1 0.025 8.7E-07 59.9 3.4 26 180-205 255-280 (416)
409 1zd9_A ADP-ribosylation factor 94.1 0.025 8.6E-07 52.1 3.0 22 185-206 24-45 (188)
410 3cph_A RAS-related protein SEC 94.1 0.025 8.5E-07 52.8 3.0 23 184-206 21-43 (213)
411 2atv_A RERG, RAS-like estrogen 94.0 0.026 8.8E-07 52.3 3.1 22 185-206 30-51 (196)
412 3i8s_A Ferrous iron transport 94.0 0.026 8.7E-07 56.2 3.2 22 185-206 5-26 (274)
413 2bcg_Y Protein YP2, GTP-bindin 94.0 0.023 7.9E-07 53.0 2.7 23 185-207 10-32 (206)
414 2o52_A RAS-related protein RAB 94.0 0.025 8.4E-07 52.8 2.9 22 185-206 27-48 (200)
415 3reg_A RHO-like small GTPase; 94.0 0.026 8.8E-07 52.1 3.0 23 185-207 25-47 (194)
416 2qu8_A Putative nucleolar GTP- 94.0 0.027 9.2E-07 53.8 3.2 22 185-206 31-52 (228)
417 1jwy_B Dynamin A GTPase domain 94.0 0.033 1.1E-06 55.9 4.0 23 185-207 26-48 (315)
418 4bas_A ADP-ribosylation factor 94.0 0.027 9.2E-07 51.8 3.1 22 185-206 19-40 (199)
419 1zj6_A ADP-ribosylation factor 94.0 0.025 8.6E-07 51.8 2.9 22 184-205 17-38 (187)
420 2p5s_A RAS and EF-hand domain 94.0 0.026 9E-07 52.4 3.0 22 185-206 30-51 (199)
421 2h57_A ADP-ribosylation factor 94.0 0.019 6.7E-07 52.8 2.1 22 185-206 23-44 (190)
422 2p65_A Hypothetical protein PF 94.0 0.026 8.9E-07 51.1 2.9 27 181-207 41-67 (187)
423 2f7s_A C25KG, RAS-related prot 94.0 0.029 9.8E-07 52.8 3.3 22 185-206 27-48 (217)
424 2zts_A Putative uncharacterize 93.9 0.037 1.3E-06 53.0 4.1 59 312-370 134-206 (251)
425 2iwr_A Centaurin gamma 1; ANK 93.9 0.022 7.5E-07 51.5 2.3 22 185-206 9-30 (178)
426 3lv8_A DTMP kinase, thymidylat 93.9 0.03 1E-06 55.0 3.4 26 182-207 26-51 (236)
427 2h17_A ADP-ribosylation factor 93.9 0.024 8.1E-07 51.8 2.5 22 185-206 23-44 (181)
428 2ew1_A RAS-related protein RAB 93.9 0.025 8.6E-07 53.2 2.7 23 185-207 28-50 (201)
429 2q3h_A RAS homolog gene family 93.8 0.031 1.1E-06 51.8 3.2 22 185-206 22-43 (201)
430 2fv8_A H6, RHO-related GTP-bin 93.8 0.027 9.3E-07 52.8 2.8 22 185-206 27-48 (207)
431 3d3q_A TRNA delta(2)-isopenten 93.8 0.031 1.1E-06 57.8 3.4 24 184-207 8-31 (340)
432 3c5c_A RAS-like protein 12; GD 93.8 0.031 1.1E-06 51.5 3.1 22 185-206 23-44 (187)
433 4tmk_A Protein (thymidylate ki 93.8 0.034 1.2E-06 53.6 3.4 26 182-207 2-27 (213)
434 3sr0_A Adenylate kinase; phosp 93.8 0.034 1.2E-06 53.2 3.4 21 185-205 2-22 (206)
435 3exa_A TRNA delta(2)-isopenten 93.7 0.038 1.3E-06 56.6 3.8 25 183-207 3-27 (322)
436 2fh5_B SR-beta, signal recogni 93.7 0.034 1.2E-06 52.1 3.3 22 185-206 9-30 (214)
437 2j1l_A RHO-related GTP-binding 93.7 0.031 1.1E-06 52.8 3.0 22 185-206 36-57 (214)
438 1njg_A DNA polymerase III subu 93.7 0.038 1.3E-06 51.7 3.6 42 313-356 126-167 (250)
439 1gwn_A RHO-related GTP-binding 93.7 0.029 1E-06 52.9 2.7 23 185-207 30-52 (205)
440 2ocp_A DGK, deoxyguanosine kin 93.7 0.038 1.3E-06 53.5 3.5 25 183-207 2-26 (241)
441 2fu5_C RAS-related protein RAB 93.6 0.021 7.3E-07 51.9 1.6 22 185-206 10-31 (183)
442 3ld9_A DTMP kinase, thymidylat 93.6 0.041 1.4E-06 53.5 3.8 27 181-207 19-45 (223)
443 3tmk_A Thymidylate kinase; pho 93.6 0.036 1.2E-06 53.6 3.3 27 181-207 3-29 (216)
444 2aka_B Dynamin-1; fusion prote 93.6 0.042 1.5E-06 54.5 4.0 23 185-207 28-50 (299)
445 2h92_A Cytidylate kinase; ross 93.6 0.033 1.1E-06 52.7 3.0 24 183-206 3-26 (219)
446 1p5z_B DCK, deoxycytidine kina 93.6 0.026 8.8E-07 55.5 2.2 27 181-207 22-48 (263)
447 2gco_A H9, RHO-related GTP-bin 93.5 0.032 1.1E-06 52.0 2.7 22 185-206 27-48 (201)
448 2b6h_A ADP-ribosylation factor 93.5 0.031 1E-06 51.9 2.5 22 184-205 30-51 (192)
449 3crm_A TRNA delta(2)-isopenten 93.5 0.038 1.3E-06 56.7 3.5 24 184-207 6-29 (323)
450 2atx_A Small GTP binding prote 93.4 0.036 1.2E-06 51.0 2.8 22 185-206 20-41 (194)
451 3pxi_A Negative regulator of g 93.4 0.17 5.8E-06 57.5 8.9 23 185-207 523-545 (758)
452 3def_A T7I23.11 protein; chlor 93.3 0.041 1.4E-06 54.2 3.2 23 185-207 38-60 (262)
453 1h65_A Chloroplast outer envel 93.3 0.041 1.4E-06 54.4 3.2 23 185-207 41-63 (270)
454 1sky_E F1-ATPase, F1-ATP synth 93.3 0.048 1.6E-06 58.8 3.9 35 171-206 140-174 (473)
455 2hf9_A Probable hydrogenase ni 93.3 0.04 1.4E-06 52.2 3.0 23 184-206 39-61 (226)
456 2g3y_A GTP-binding protein GEM 93.3 0.048 1.6E-06 52.1 3.5 22 185-206 39-60 (211)
457 3cmu_A Protein RECA, recombina 93.2 0.2 6.7E-06 62.7 9.4 36 171-206 718-755 (2050)
458 4djt_A GTP-binding nuclear pro 93.1 0.021 7.2E-07 53.8 0.7 22 185-206 13-34 (218)
459 3cpj_B GTP-binding protein YPT 93.1 0.046 1.6E-06 51.9 3.1 23 185-207 15-37 (223)
460 2hup_A RAS-related protein RAB 93.1 0.043 1.5E-06 51.3 2.8 22 185-206 31-52 (201)
461 3foz_A TRNA delta(2)-isopenten 93.0 0.059 2E-06 55.1 3.8 24 183-206 10-33 (316)
462 4dcu_A GTP-binding protein ENG 93.0 0.042 1.4E-06 58.8 2.9 22 185-206 25-46 (456)
463 2x77_A ADP-ribosylation factor 93.0 0.03 1E-06 51.3 1.6 22 184-205 23-44 (189)
464 3tqf_A HPR(Ser) kinase; transf 92.9 0.087 3E-06 49.5 4.5 35 170-205 4-38 (181)
465 2r62_A Cell division protease 92.9 0.013 4.6E-07 57.4 -1.1 30 175-206 38-67 (268)
466 2yc2_C IFT27, small RAB-relate 92.9 0.021 7.3E-07 52.8 0.4 22 185-206 22-43 (208)
467 4gzl_A RAS-related C3 botulinu 92.8 0.048 1.6E-06 51.1 2.7 23 184-206 31-53 (204)
468 3cnl_A YLQF, putative uncharac 92.7 0.055 1.9E-06 53.7 3.2 24 184-207 100-123 (262)
469 1ypw_A Transitional endoplasmi 92.7 0.017 5.9E-07 66.4 -0.6 32 176-207 504-535 (806)
470 3q3j_B RHO-related GTP-binding 92.7 0.054 1.9E-06 51.2 3.0 22 185-206 29-50 (214)
471 2j0v_A RAC-like GTP-binding pr 92.7 0.052 1.8E-06 50.8 2.7 22 185-206 11-32 (212)
472 3eph_A TRNA isopentenyltransfe 92.5 0.066 2.2E-06 56.7 3.5 24 184-207 3-26 (409)
473 3euj_A Chromosome partition pr 92.5 0.18 6.1E-06 54.6 7.0 71 293-370 377-464 (483)
474 2chg_A Replication factor C sm 92.5 0.065 2.2E-06 49.6 3.2 41 313-355 102-142 (226)
475 3n70_A Transport activator; si 92.4 0.072 2.4E-06 47.4 3.2 41 313-355 76-116 (145)
476 2orw_A Thymidine kinase; TMTK, 92.4 0.073 2.5E-06 49.8 3.4 52 313-369 76-136 (184)
477 2eyu_A Twitching motility prot 92.4 8.4E-05 2.9E-09 74.3 -18.0 72 282-356 160-241 (261)
478 2vhj_A Ntpase P4, P4; non- hyd 92.4 0.082 2.8E-06 54.3 3.9 28 178-205 118-145 (331)
479 3syl_A Protein CBBX; photosynt 92.3 0.07 2.4E-06 53.1 3.4 27 181-207 65-91 (309)
480 1sxj_D Activator 1 41 kDa subu 92.2 0.065 2.2E-06 54.2 3.0 42 313-356 133-174 (353)
481 3r7w_A Gtpase1, GTP-binding pr 92.0 0.085 2.9E-06 53.3 3.5 24 183-206 3-26 (307)
482 1lw7_A Transcriptional regulat 91.8 0.099 3.4E-06 54.1 3.9 29 295-323 296-329 (365)
483 1d2n_A N-ethylmaleimide-sensit 91.8 0.092 3.1E-06 51.6 3.4 25 181-205 62-86 (272)
484 1xwi_A SKD1 protein; VPS4B, AA 91.8 0.093 3.2E-06 53.4 3.6 28 180-207 42-69 (322)
485 3gmt_A Adenylate kinase; ssgci 91.7 0.09 3.1E-06 51.4 3.2 21 185-205 10-30 (230)
486 4hlc_A DTMP kinase, thymidylat 91.6 0.11 3.8E-06 49.5 3.7 25 183-207 2-26 (205)
487 3uk6_A RUVB-like 2; hexameric 91.5 0.095 3.3E-06 53.5 3.4 27 181-207 68-94 (368)
488 3p32_A Probable GTPase RV1496/ 91.5 0.11 3.6E-06 53.8 3.7 26 182-207 78-103 (355)
489 2x2e_A Dynamin-1; nitration, h 91.5 0.086 2.9E-06 54.3 3.0 23 185-207 33-55 (353)
490 2hjg_A GTP-binding protein ENG 91.5 0.084 2.9E-06 56.1 2.9 22 185-206 5-26 (436)
491 3t15_A Ribulose bisphosphate c 91.4 0.091 3.1E-06 52.7 3.0 24 183-206 36-59 (293)
492 3th5_A RAS-related C3 botulinu 90.7 0.036 1.2E-06 51.6 0.0 21 185-205 32-52 (204)
493 1puj_A YLQF, conserved hypothe 91.4 0.11 3.8E-06 52.1 3.5 25 183-207 120-144 (282)
494 1ofh_A ATP-dependent HSL prote 91.3 0.099 3.4E-06 51.7 3.1 25 183-207 50-74 (310)
495 3gj0_A GTP-binding nuclear pro 91.2 0.068 2.3E-06 50.5 1.7 22 185-206 17-39 (221)
496 3eie_A Vacuolar protein sortin 91.2 0.11 3.9E-06 52.5 3.6 26 181-206 49-74 (322)
497 3hws_A ATP-dependent CLP prote 91.2 0.1 3.5E-06 53.7 3.1 26 182-207 50-75 (363)
498 1wxq_A GTP-binding protein; st 91.1 0.097 3.3E-06 55.2 3.0 22 185-206 2-23 (397)
499 2qgz_A Helicase loader, putati 91.1 0.12 4.2E-06 52.3 3.7 23 183-205 152-174 (308)
500 3geh_A MNME, tRNA modification 91.0 0.092 3.1E-06 56.5 2.7 25 182-206 223-247 (462)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.1e-51 Score=430.68 Aligned_cols=222 Identities=24% Similarity=0.402 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++|..+ .....+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLS 96 (366)
T ss_dssp CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCC
T ss_pred ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCC
Confidence 379999999999421 123579999999999999999999999999999999999543 568999999999852
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+|+.||||||++.+|+.+||+||+.|+.... ..++.+..+++.++++.+||.+..+. ++.+|||||
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGq 168 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQ 168 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHH
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHH
Confidence 24678999999999999999999999987654 24566677889999999999877665 457999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |+|||+|||++. .+..+||+|++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999754 999999999975 4778999999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
+++++
T Consensus 248 ~~ev~ 252 (366)
T 3tui_C 248 VSEVF 252 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.4e-51 Score=405.60 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++|... ...+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ~l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCH
Confidence 37899999999421 113579999999999999999999999999999999999553 568999999998752
Q ss_pred -h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc-cccccCcccCCCChh
Q 008534 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 -~---~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSGG 299 (562)
. . ++.||||+|++.+|+.+||+||+.++...+........+..+++.++++.++|.+.. +. ++.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 1 1 346999999999999999999999986543222334566677888999999997643 44 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. +..+||+|++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 999999999975 45899999999999999999
Q ss_pred ChHHH
Q 008534 379 KASEA 383 (562)
Q Consensus 379 ~~~el 383 (562)
+.+++
T Consensus 228 ~~~~~ 232 (235)
T 3tif_A 228 KLRGF 232 (235)
T ss_dssp ECC--
T ss_pred Chhhh
Confidence 88764
No 3
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9e-51 Score=413.55 Aligned_cols=218 Identities=29% Similarity=0.536 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--h-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--~- 225 (562)
.|+++||+|+|. ..+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 7 ~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccc
Confidence 699999999982 23459999999999999999999999999999999999653 56899999999983 1
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ---~~~~~igyV~Q~~--~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.||||||++ .+| .+||+||+.|+.... ..+..+..+++.++++.+||.+..+.. +.+|||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred cHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 3567899999997 345 689999999987543 345666677899999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++||++.. +..+||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999997 569999999999875 668899999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 998754
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.6e-51 Score=429.38 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCH
Confidence 48999999998 35679999999999999999999999999999999999543 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+|||.|+...+ ..++++.++++.++++.++|.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 4577999999999999999999999987654 34566777889999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+..+.++++.|+++.++ |+|+|++||++. ++..+||||++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999975 5788999999999999999999999853
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-50 Score=410.30 Aligned_cols=217 Identities=28% Similarity=0.463 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccc
Confidence 59999999998 24579999999999999999999999999999999999653 568999999998751
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCcc-cccccc
Q 008534 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIG 289 (562)
Q Consensus 226 --------------~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg 289 (562)
.+++.||||+|++.+|+.+||+||+.++. ... .....+..+++.++++.+||.+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 24567999999999999999999999864 222 22344556678899999999876 6654
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|
T Consensus 151 ---~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 151 ---PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999877999999999975 466789999999
Q ss_pred cCCeEEEecChHHHH
Q 008534 370 GKGSLLYFGKASEAM 384 (562)
Q Consensus 370 ~~G~iv~~G~~~el~ 384 (562)
++|++++.|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-50 Score=409.66 Aligned_cols=218 Identities=26% Similarity=0.479 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---- 224 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccc
Confidence 69999999998 24579999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (562)
..+++.||||+|++.+|+.+||+||+.|+. ... .....+.++++.++++.++|.+..+.. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 124567999999999999999999999964 322 223445566788999999998776654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999877999999999975 466789999999999999999998
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.7e-51 Score=428.29 Aligned_cols=218 Identities=27% Similarity=0.448 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC----C
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~----~ 224 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 59999999998 35679999999999999999999999999999999999543 5689999999987 2
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 225 --~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
...++.||||||++.+||++||+|||.|+...+ ...+.+.++++.++++.++|.+..+.. +.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRY-----PHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSC-----GGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHH
Confidence 134678999999999999999999999986433 234455667899999999998876654 5789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||+|||||+.+|+||||||||+|||+..+.++++.|+++. +.|+|+|++|||+. ++..+||||++|++|++++.|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999888875 45999999999975 577899999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9854
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-50 Score=404.46 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 15 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred eEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
.+++.||||+|++.+++.+||+||+.++.... .....+..+++.++++.+||.+..++. +.+|||||||||+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 156 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999875432 123344456788999999998776654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999999877999999999975 4667899999999999999999998765
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.9e-50 Score=397.09 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 24679999999999999999999999999999999999653 568999999998742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 ----~~~-~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
.++ +.|+||+|++.+|+.+||+||+.++...+ .....+..+++.++++.++|.+..+.. +.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq 145 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGE 145 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 123 57999999999999999999999976543 123444566788999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. + .+||+|++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999999999999998779999999999653 4 7899999999999999986
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.5e-50 Score=404.54 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999653 568999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhh-CCCC---------CccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
..++.||||+|++.+|+.+||+||+.++... .... .....+..+++.++++.+||.+..++. +
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 151 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 151 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----c
Confidence 2356799999999999999999999987532 1000 012234456788999999998776654 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999998779999999999864 667899999999999
Q ss_pred EEEecChHH
Q 008534 374 LLYFGKASE 382 (562)
Q Consensus 374 iv~~G~~~e 382 (562)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999988
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-49 Score=419.41 Aligned_cols=218 Identities=26% Similarity=0.499 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCCh
Confidence 48999999998 24579999999999999999999999999999999999643 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK-----PTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999976432 234445567889999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999975 4778999999999999999999999853
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-49 Score=419.19 Aligned_cols=218 Identities=28% Similarity=0.508 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 48999999987 24579999999999999999999999999999999999643 568999999999853 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRY-----PWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCC-----hhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 234556667899999999998776654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999975 4778999999999999999999999853
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-49 Score=417.58 Aligned_cols=220 Identities=24% Similarity=0.465 Sum_probs=194.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++|. +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++..
T Consensus 13 ~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 13 MTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCC
T ss_pred ceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCC
Confidence 4799999999871 24579999999999999999999999999999999999653 568999999998853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHH
Q 008534 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||||||+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~-----~~~LSGGq~QRva 155 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRF-----PHELSGGQQQRVA 155 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHHH
Confidence 34678999999999999999999999987543 234556677899999999998776654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|+||||||||++||+.++.++++.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999754 999999999975 477899999999999999999999885
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 235 ~ 235 (355)
T 1z47_A 235 E 235 (355)
T ss_dssp H
T ss_pred h
Confidence 3
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2e-49 Score=419.32 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccc
Confidence 58999999998 24579999999999999999999999999999999999643 568999999988632
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH
Q 008534 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 -----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~-----~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----cccCCHHH
Confidence 23577999999999999999999999987543 234556667899999999998776654 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999754 999999999975 4778999999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 224 ~~~l~~ 229 (372)
T 1g29_1 224 PDEVYD 229 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999853
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-49 Score=398.03 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCH
Confidence 69999999998 24579999999999999999999999999999999999643 568999999998753
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-CCccccccccCcccCCCChhHHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (562)
. .++.||||+|++.+|+.+||+||+.++..... ......+++.++++.++ |.+..++ .+.+|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~q 146 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHH
Confidence 1 24569999999999999999999998642211 12233456778889884 8765554 35789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4678999999999999999999988
Q ss_pred HH
Q 008534 383 AM 384 (562)
Q Consensus 383 l~ 384 (562)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.9e-50 Score=419.15 Aligned_cols=218 Identities=27% Similarity=0.483 Sum_probs=192.5
Q ss_pred eEEEEeEEEEEeecccCCccccc--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~--iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~- 225 (562)
+|+++||+++| +++. +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEET
T ss_pred EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECccc
Confidence 48999999998 2456 9999999999999999999999999999999999543 568999999988632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh
Q 008534 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (562)
Q Consensus 226 ------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (562)
..++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+.. +.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~-----~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHF-----PRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCC-----hhhCCHH
Confidence 34678999999999999999999999986432 234556667899999999998776654 5789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 300 qrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
|||||+|||||+.+|+||||||||++||+.++.++++.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999754 999999999975 477899999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 224 ~~~~l~~ 230 (353)
T 1oxx_K 224 KPEDLYD 230 (353)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999853
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.3e-49 Score=403.23 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+|.| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 11 LLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCH
T ss_pred eEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCH
Confidence 69999999998 35679999999999999999999999999999999999643 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.++||+|++.+++.+||+||+.++.... ......+++.++++.++|.+..+.. +.+|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRV 150 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998888899999999876432 1122345788899999998776654 468999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+. +|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999 99999999999999999999999999999765 579999999975 46779999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9999874
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2e-49 Score=419.10 Aligned_cols=218 Identities=26% Similarity=0.471 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|.+. +++|+|.++|+++.. .
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCCh
Confidence 49999999998 24579999999999999999999999999999999999543 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+ ..++.+.++++.++++.++|.+..+. ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 3577999999999999999999999975332 23455666789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
||||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999975 4778999999999999999999999853
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.4e-49 Score=410.24 Aligned_cols=215 Identities=29% Similarity=0.502 Sum_probs=180.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+|+|. ..+++|+||||+|++||++||+||||||||||+++|+|. +. +.+|+|.+||.++..
T Consensus 52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-~~-p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-YD-ISSGCIRIDGQDISQVT 122 (306)
T ss_dssp CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-SC-CSEEEEEETTEETTSBC
T ss_pred CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-CC-CCCcEEEECCEEcccCC
Confidence 4699999999982 245799999999999999999999999999999999985 43 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (562)
.+|+.||||+|++.+|+ .||+|||.|+.... ..+ ++.++++..+ +++.+++.++. .+.+|
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~L 191 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKL 191 (306)
T ss_dssp HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCC
T ss_pred HHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CHH----HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCC
Confidence 46788999999999996 59999999874221 121 1222333322 34566777764 45689
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+|||+++. + ..||+|++|++|+|++
T Consensus 192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVE 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 7999999999864 4 4599999999999999
Q ss_pred ecChHHHHH
Q 008534 377 FGKASEAMA 385 (562)
Q Consensus 377 ~G~~~el~~ 385 (562)
.|++++++.
T Consensus 269 ~G~~~el~~ 277 (306)
T 3nh6_A 269 RGRHEALLS 277 (306)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999875
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5e-49 Score=412.79 Aligned_cols=213 Identities=29% Similarity=0.498 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~ 226 (562)
+|+++||+++| +++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 1 ml~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch
Confidence 37899999998 245 9999999999999999999999999999999999643 568999999998853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 227 ~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.++.||||||++.+||++||+||+.|+...+. ..+. +++.++++.++|.+..+.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 46789999999999999999999999865431 1111 5788999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
||||+.+|++|||||||++||+.++..+.+.|+++.+ .|+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 4999999999975 477899999999999999999999875
No 21
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.2e-51 Score=458.16 Aligned_cols=351 Identities=24% Similarity=0.312 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++..++..+...|.+...++||+|+.+..+.++|.+..........+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999998888888766555433221111000000000000001112234577
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+........ ..+.+...+.+++.... ......+.....+++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG----VGAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC----TTCCCCCCCSCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC----CCccccCCCCCeEEE
Confidence 7777777788887777655432211110 00111111111111100 000011122346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. ..++++|+|+||+|++||++||+||||||||||+++|+|.+ + +.+|+|.+||+++.. .+|
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D-VTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-C-CCCcEEEECCEEhhhCCHHHHh
Confidence 99999882 23467999999999999999999999999999999999854 3 458999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqr 301 (562)
++||||+|++.+|+. ||+|||.++.. . ..++ ++.+.++.. .+++..+|.+|.. +.+||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~----~-~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSgGq~ 483 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP----T-ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSGGQK 483 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS----S-CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC----C-CCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCHHHH
Confidence 889999999999975 99999998632 1 1222 222333332 3466788888754 567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+++|+|||||||||+||+.++..+.+.|+++. +++|+|++||+++. + ..||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999885 47999999999875 3 569999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
|+++
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 22
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-51 Score=459.56 Aligned_cols=357 Identities=21% Similarity=0.254 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...|.+...+|||+|+.+..+.++|.+..........+.....+...........-..+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888899999999999999999988888888766554332211000000000000000000111224567
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCC----------CCCCCCccccccccCC--CCCCCCCCCCceeEEEEeEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKP----------FSDDDIPEDIEAGTRE--RPKFQTEPTLPIYLKFTDVT 156 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~nvs 156 (562)
+.++..+..+.|.++++..+............ .+..++.+.++..+.. .......+.....|+++||+
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 348 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVE 348 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEE
Confidence 77777777777776665543221110000000 0000011111111100 00000111223479999999
Q ss_pred EEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 008534 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (562)
Q Consensus 157 ~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~ig 232 (562)
|+|+ ...+++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|++|+
T Consensus 349 ~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-~~-~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 349 FRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-ID-PERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp ECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-SC-CSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred EEcC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-cc-CCCcEEEECCEEcccCCHHHHHhheE
Confidence 9882 2356799999999999999999999999999999999985 43 458999999999853 4678899
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 233 yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
||+|++.+|+. ||+|||.++.. ..++++..+ .+.+.++ .+++..++.++. .+.+|||||||||+||
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~-~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYDSRVER-GGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECS-SSCSSCHHHHHHHHHH
T ss_pred EECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcC-CCCCcCHHHHHHHHHH
Confidence 99999999975 99999988632 112222111 1223333 356677888775 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|++||+++. ...||+|++|++|++++.|+++|+++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999985 48999999999864 46899999999999999999999875
No 23
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.7e-50 Score=451.32 Aligned_cols=350 Identities=21% Similarity=0.256 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++...+..+...|.+...++||+|+.+....++|.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999999999988776665443222111111100000001111112234467
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccc----------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIA----------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+........ ..+.+...+.++..+ +.....+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~------~~~~~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD------NGKYEAERVNGEVDV 344 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC------CCCCCCCCCCCeEEE
Confidence 7777777777777777665433221111 111111111111100 000011112346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. +.++++|+|+||+|++||+++|+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-YD-VDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCCEEEECCEEhhhCCHHHHh
Confidence 99999982 1136799999999999999999999999999999999985 43 458999999998752 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (562)
++||||+|++.+|+. ||+|||.++.. + ..+ ++++.++++.+++ ++..||.+|.. +.+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred cCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHH
Confidence 889999999999974 99999998631 1 112 2334555555554 34567777654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
||++|||||+++|+||||||||++||+.++..+.+.|+++.+ |+|+|++||+++. + +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 8999999999864 3 579999999999999999999
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++++
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 9864
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-48 Score=395.11 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeecccCCccc---cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEE---KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~---~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~ 225 (562)
+|+++||+++|. ... +++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~------~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFH------RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEES------TTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEec------CCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch
Confidence 489999999982 012 579999999999999999999999999999999999643 568999999998864
Q ss_pred -hccCcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCcccCCCChhHH
Q 008534 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 226 -~~~~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqr 301 (562)
.+++.||||+|++ .+++.+||+||+.|+..... +..+..+++.++++.+||. +..++. +.+||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHH
Confidence 3567899999996 45667899999998743211 1112245678899999998 766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChH
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||++++|++|++++.|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999997679999999999864 56789999999999999999998
Q ss_pred HHHH
Q 008534 382 EAMA 385 (562)
Q Consensus 382 el~~ 385 (562)
++..
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-48 Score=390.75 Aligned_cols=211 Identities=25% Similarity=0.432 Sum_probs=183.7
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~ 227 (562)
|+++||+++| +. +|+||||+|++ |+++|+||||||||||+|+|+|.+. +.+|+|.++|.++.. ..
T Consensus 2 l~~~~l~~~y--------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRL--------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEE--------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEe--------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchh
Confidence 6899999998 12 59999999999 9999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.||||+|++.+|+.+||+||+.|+...+ . ....++++.++++.+||.+..+.. +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 667999999999999999999999864321 1 112256788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++++.
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999754 999999999975 467889999999999999999998875
No 26
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-50 Score=453.45 Aligned_cols=351 Identities=24% Similarity=0.278 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.+++.++..+...|.+...+|||+|+.+....++|.+..........+.....+...........-..+.-+..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888889999999999999999999888888766554333222111111110000000011112234577
Q ss_pred hhhhhhhhhhhhhhcccccCCCCcccccc----------------CCCCCCCCCccccccccCCCCCCCCCCCCceeEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIAD----------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (562)
+.++..+..+.|.++++..+......... .+.+...+.++..+. +.....+.....|++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-----~~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD-----PDAVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-----SSCCCCCSCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCCCeEEE
Confidence 77777888888888887766543322111 111111111111110 000011122346999
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hcc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~ 228 (562)
+||+|+|. +++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-~~-p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-YD-VDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-SC-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-cC-CCCeEEEECCEEhhhCCHHHHH
Confidence 99999872 245799999999999999999999999999999999985 43 458999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
++|+||+|++.+|+ .||+|||.++... .++++..+ ..++.++ .+++..+|.+|.. ..+||||||||
T Consensus 429 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~-g~~LSgGq~Qr 499 (598)
T 3qf4_B 429 SSIGIVLQDTILFS-TTVKENLKYGNPG-----ATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQL 499 (598)
T ss_dssp HHEEEECTTCCCCS-SBHHHHHHSSSTT-----CCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHH-HTTSCHHHHHH
T ss_pred hceEEEeCCCcccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhCCHHHHH--hccccccchhcCC-CCCCCHHHHHH
Confidence 88999999999997 5999999986321 11111111 1123333 3456778877643 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 304 v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|++||+++. + ..||+|++|++|++++.|+++|+
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999986 58999999999875 4 56999999999999999999998
Q ss_pred HH
Q 008534 384 MA 385 (562)
Q Consensus 384 ~~ 385 (562)
++
T Consensus 577 ~~ 578 (598)
T 3qf4_B 577 IQ 578 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 27
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-50 Score=488.96 Aligned_cols=356 Identities=22% Similarity=0.276 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..++.++..++..+.++|.+.+.+|||+|+.+..+.++|.+........+.+.....+...........-.-+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888889999999999999999999999999999877766544333222111111000011111111223567
Q ss_pred hhhhhhhhhhhhhhhcccccCCCCcc----------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTMPPD----------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.++..+..+.|.++++..+..... ..+..+.+...+.++.++..... ..........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~---~~~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA---GRKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC---CCCCCCCCCCEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc---cccCCCCCCcEE
Confidence 78888888888887776654332111 11111222222222222211111 011112234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
|+||+|+|+ ...++++|+||||+|++|+++||+||||||||||+++|.| +++ +.+|+|.+||.+++. .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~-~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYD-VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSC-CSEEEEEETTEETTTSCHHHH
T ss_pred EEEeeeeCC-----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc-ccc-cccCcccCCCccchhccHHHH
Confidence 999999983 2346789999999999999999999999999999999997 554 458999999999863 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|+|.+|+ .||+|||.|+.. ..++++..+. +++.++. |++..||.+|++. ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~-~TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~~--lp~G~~T~vGe~G-~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN-CTIEENISLGKE-----GITREEMVAACKMANAEKFIKT--LPNGYNTLVGDRG-TQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS-EEHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHHH--STTTTSSEESSSS-CCCCHHHHH
T ss_pred hhcccccCCcceeeC-CchhHHHhhhcc-----cchHHHHHHHHHHccchhHHHc--CCCCCccEecCCC-CCCCHHHHH
Confidence 889999999999997 599999999742 1233322221 2333443 5889999999765 469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|+|+|+++. .+.||+|++|++|+|++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHH
Confidence 99999999999999999999999999999999999999874 8999999999985 57899999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
Confidence 974
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.6e-48 Score=391.63 Aligned_cols=220 Identities=24% Similarity=0.298 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH
Confidence 58999999998 2457999999999999999999999999999999999962123568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCC-CChhHH
Q 008534 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG-VSGGER 301 (562)
Q Consensus 226 -~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~-LSGGqr 301 (562)
. .+..++||+|++.+|+.+||+||+.++............+..+++.++++.+||. +..++. +.+ ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHH
Confidence 1 2445999999999999999999999865311011112334456788999999994 666654 457 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999999999999997679999999999764 5566 599999999999999998
Q ss_pred HH
Q 008534 381 SE 382 (562)
Q Consensus 381 ~e 382 (562)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 29
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.1e-50 Score=452.74 Aligned_cols=356 Identities=19% Similarity=0.237 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++...+.++...|.+...++||+|+.+....++|.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888889999999999999999999998888776655443221111000000000000001111223456
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccccccCCCC----------CCCCCccccccccCCCCCCCCCCCCceeEEEEeEEEE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDEIADSKPF----------SDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (562)
+.++..+..+.|.++++..+............. +..++.+.++..+...+.....+.....|+++||+|+
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 350 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFT 350 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEEC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEE
Confidence 666666667777766665533221111000000 0000111111111000000011112346999999998
Q ss_pred EeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 008534 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (562)
Q Consensus 159 y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV 234 (562)
|. ..++++|+|+||+|++||++||+||||||||||+++|+|.+ + +.+|+|.+||+++.+ .+|++|+||
T Consensus 351 y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v 422 (582)
T 3b60_A 351 YP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYTLASLRNQVALV 422 (582)
T ss_dssp SS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBCHHHHHHTEEEE
T ss_pred cC------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-C-CCCCeEEECCEEccccCHHHHHhhCeEE
Confidence 72 11267999999999999999999999999999999999854 3 458999999999853 457789999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChhHHHHHHHH
Q 008534 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 235 ~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+|++.+|+. ||+|||.++.. + ..++ +++.++++.+++ ++..+|.+|.. +.+|||||||||+||
T Consensus 423 ~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 423 SQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIA 492 (582)
T ss_dssp CSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHH
T ss_pred ccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999985 99999998631 1 1222 335555655554 34677777654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
|||+++|+|||||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.||+|++|++|++++.|+++++++
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999875 9999999999864 3 5799999999999999999999865
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-48 Score=397.57 Aligned_cols=221 Identities=23% Similarity=0.387 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC--h
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~--~ 225 (562)
.+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++. .
T Consensus 20 ~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEccccc
Confidence 369999999998 24579999999999999999999999999999999999653 56899999999875 2
Q ss_pred ----hccCcEEEEccCCCC-C-CCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 ----SLKSKIGFVTQDDVL-F-PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l-~-~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+++.||||+|++.+ + +.+||+||+.++...... ......+..+++.++++.+||.+..++. +.+|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCH
Confidence 356789999999764 2 356999999986321000 0011223456788999999998776654 468999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEE--EEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tv--ii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|| |++||++.. +..+||+|++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~-~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG-CCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997669999 999999764 667899999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 244 ~g~~~~~~ 251 (279)
T 2ihy_A 244 QGAVEDIL 251 (279)
T ss_dssp EEEHHHHC
T ss_pred ECCHHHHh
Confidence 99998763
No 31
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.8e-48 Score=389.98 Aligned_cols=223 Identities=28% Similarity=0.353 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
.+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+..++.+|+|.++|.++..
T Consensus 19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 369999999998 2467999999999999999999999999999999999964223468999999998742
Q ss_pred --hc-cCcEEEEccCCCCCCCCCHHHHHHHHHh-h---CCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccC-CC
Q 008534 226 --SL-KSKIGFVTQDDVLFPHLTVKETLTYAAL-L---RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GV 296 (562)
Q Consensus 226 --~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~L 296 (562)
.. ++.|+||+|++.+|+.+||.||+.+... . .........+..+++.++++.+||. +..++. +. +|
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~L 165 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGF 165 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCC
Confidence 12 3459999999999999999999987542 1 1011123444456788999999996 444543 44 59
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhc-CCEEEEEcCCeEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||+|++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987669999999999754 4455 8999999999999
Q ss_pred EecChHHHH
Q 008534 376 YFGKASEAM 384 (562)
Q Consensus 376 ~~G~~~el~ 384 (562)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999998865
No 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.8e-48 Score=386.12 Aligned_cols=215 Identities=28% Similarity=0.512 Sum_probs=179.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+++|. +.++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 6 ~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 6 HDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSC
T ss_pred CceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCC
Confidence 3689999999871 124579999999999999999999999999999999999543 568999999999753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCcccCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGV 296 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~L 296 (562)
.+++.||||+|++.+|+ .||+||+.|+.. ... .+++.++++.+++.+..+ +.++ ..+.+|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~L 146 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 146 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCC
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCC
Confidence 34677999999999997 699999988521 111 223556666677654433 3332 346789
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 59999999999764 4 5699999999999999
Q ss_pred ecChHHHH
Q 008534 377 FGKASEAM 384 (562)
Q Consensus 377 ~G~~~el~ 384 (562)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 33
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.3e-50 Score=449.17 Aligned_cols=355 Identities=24% Similarity=0.321 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccch
Q 008534 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (562)
+..++.++...+..+...|.+...++||+|+.+..+.++|.+..........+.....+...........-..+.-++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 267 (595)
T 2yl4_A 188 KLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 267 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777888889999999999999999999999988777665443221111111100000000011112224567
Q ss_pred hhhhhhhhhhhhhhcccccCCCCccc----------------cccCCCCCCCCCccccccccCCCCCCCCCCCCcee-EE
Q 008534 89 AALSRASSASLGLSFSFTGFTMPPDE----------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIY-LK 151 (562)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 151 (562)
+.++..+..+.|.++++..+...... .+..+.+...+.++..... +.....+..... |+
T Consensus 268 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~~~~~~~~~~~~i~ 343 (595)
T 2yl4_A 268 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN----EGVILNEKSFQGALE 343 (595)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS----CSBCCCTTTCCCCEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCCCCCcCCCCCeEE
Confidence 77777777777777666554321111 0011111111111110000 000000111235 99
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
++||+|+|. .+.++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+
T Consensus 344 ~~~v~~~y~-----~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~-p~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 344 FKNVHFAYP-----ARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-YD-PASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEECS-----SCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-SC-CSEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEeC-----CCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCcEEEECCEEhhhCCHHHH
Confidence 999999982 11135799999999999999999999999999999999985 43 458999999999853 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGq 300 (562)
|++|+||+|++.+|+ .||+|||.++.... ...+ ++++.++++.+++ ++..||.+|.. +.+|||||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgGq 488 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGGQ 488 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-CCcCCHHH
Confidence 778999999999997 59999999864210 0112 2345566666654 55678887654 57899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
||||+|||||+++|+||||||||++||+.++..+.+.|+++.+ |+|+|++||+++. + +.||+|++|++|++++.|++
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999876 8999999999764 4 56999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++++
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 98753
No 34
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-50 Score=486.85 Aligned_cols=351 Identities=22% Similarity=0.292 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccchhhh
Q 008534 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (562)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (562)
.+.++..+.....+.|.+...+|||+|+.+....++|.+.+........+.....+...........-+.+..++.|+.+
T Consensus 925 ~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 1004 (1321)
T 4f4c_A 925 VKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLAL 1004 (1321)
T ss_dssp TTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456677777888899999999999999999999988777655433221111111110001111111112223455555
Q ss_pred hhhhhhhhhhhcc------cccCCCCccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCceeEEEE
Q 008534 92 SRASSASLGLSFS------FTGFTMPPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (562)
Q Consensus 92 ~~~~~~~~g~~~~------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (562)
+..+..+.+.... +.....+...+. ..+.+...+..+..+... .....++....|+|+
T Consensus 1005 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~~g~I~f~ 1080 (1321)
T 4f4c_A 1005 IITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS----LAGEKKKLYGKVIFK 1080 (1321)
T ss_dssp TSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----CCSBCCCCCCCEEEE
T ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc----CCCCCCCCCCeEEEE
Confidence 4444332221111 111111111100 001111111111111100 001112223479999
Q ss_pred eEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccC
Q 008534 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (562)
Q Consensus 154 nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~ 229 (562)
||+|+|+ .+.+.+||+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|++||.|+.+ .+|+
T Consensus 1081 nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p-~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1081 NVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER-FYDT-LGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT-SSCC-SSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEeCC-----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc-CccC-CCCEEEECCEEhhhCCHHHHHh
Confidence 9999983 2345679999999999999999999999999999999996 6655 58999999999863 6899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCcccCCCChhHHH
Q 008534 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 230 ~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
+|+||||||.+|+. ||+|||.|+.. |...++++ +.++++.. .|++.+||.+|+.. ..|||||||
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQ 1224 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQ----VEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQ 1224 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHH----HHHHHHHhCChHHHHcCcCCCCCEecCCC-cccCHHHHH
Confidence 99999999999975 99999998742 22334333 33333332 45788999998654 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
|++|||||+++|+|||||||||+||++++..|.+.|+++. +|+|+|+|+|++++ ...||+|+||++|+|+++|+|+|
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998865 48999999999986 47799999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.3e-48 Score=393.10 Aligned_cols=223 Identities=30% Similarity=0.475 Sum_probs=180.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||++.|. ....+++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~y~-----~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYP-----NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCT-----TCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeC-----CCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCC
Confidence 3699999999872 1012679999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHc--CCCccccccccCcccCCCChhH
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGq 300 (562)
.+++.|+||+|++.+|+ .||+|||.|+...... ...........+.++++.+ ||....+ ..+.+|||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-----~~~~~LSgGq 161 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-----ETGNQLSGGQ 161 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-----GGGTTSCHHH
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-----CCcCCCCHHH
Confidence 34667999999999997 5999999986421100 0001111223456677777 5554433 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 48999999999753 4 4599999999999999999
Q ss_pred hHHHHH
Q 008534 380 ASEAMA 385 (562)
Q Consensus 380 ~~el~~ 385 (562)
++++..
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6e-47 Score=380.99 Aligned_cols=211 Identities=28% Similarity=0.409 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++|. .++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|. ++
T Consensus 4 ~l~i~~l~~~y~-------~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~~ 65 (253)
T 2nq2_C 4 ALSVENLGFYYQ-------AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------VY 65 (253)
T ss_dssp EEEEEEEEEEET-------TTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------EC
T ss_pred eEEEeeEEEEeC-------CCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------Ee
Confidence 699999999981 14579999999999999999999999999999999999653 5689998 35
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+.||||+|++.+++.+||+||+.++...... .........+++.++++.+||.+..+.. +.+|||||||||+||
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIA 140 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHHH
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHHH
Confidence 6799999999999889999999987532100 0011233456788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||++. .+..+||++++|++|+ ++.|+++++.
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999999999999999999999999876 999999999975 4668899999999999 9999988763
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-47 Score=383.33 Aligned_cols=216 Identities=30% Similarity=0.483 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+|+|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (243)
T 1mv5_A 1 MLSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISL 71 (243)
T ss_dssp CEEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCH
Confidence 378999999871 24579999999999999999999999999999999999543 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccc------cCcccCCCCh
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSG 298 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v------g~~~~~~LSG 298 (562)
.+++.|+||+|++.+|+ .||+||+.|+... ... .+++.++++.+++.+..+... -+..+.+|||
T Consensus 72 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 72 ENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp SCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred HHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 35678999999999997 5999999875211 112 234667788888876554432 1234678999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++.|
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEKGQITGSG 219 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEETTEECCCS
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999997 59999999999753 4 569999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+++++..
T Consensus 220 ~~~~~~~ 226 (243)
T 1mv5_A 220 KHNELVA 226 (243)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9988754
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.3e-47 Score=379.56 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
+|+++||+++ ++|+||||+|++||+++|+||||||||||+|+|+|.+. +. |+|.++|.++..
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCH
Confidence 6899999862 58999999999999999999999999999999999653 56 999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
.+++.|+||+|++.+|+.+||+||+.++... ... ++++.++++.+||.+..+.. +.+|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHD----KTR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS----TTC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhcc----CCc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 3466799999999999999999999986311 111 45678899999998776654 568999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 305 CIGNEIIINPS-------LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 305 ~IAraLl~~P~-------iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999 99999999999999999999999999777999999999975 46688999999999999999
Q ss_pred cChHHHH
Q 008534 378 GKASEAM 384 (562)
Q Consensus 378 G~~~el~ 384 (562)
|+++++.
T Consensus 215 g~~~~~~ 221 (249)
T 2qi9_C 215 GRREEVL 221 (249)
T ss_dssp EEHHHHS
T ss_pred CCHHHHh
Confidence 9998863
No 39
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.2e-48 Score=465.38 Aligned_cols=356 Identities=23% Similarity=0.299 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCccccccccCCCCcchhhhhhhhhhhcCCCcccccccceeeeeecccccccccccccc
Q 008534 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (562)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (562)
.+..++.++..++..+.++|.+...+|||+|+.+..+.++|.+........+.+.....+.+.........-..+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999987766654433322222221111111111112334567
Q ss_pred hhhhhhhhhhhhhhhcccccCCC----Cc------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCceeEE
Q 008534 88 GAALSRASSASLGLSFSFTGFTM----PP------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (562)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (562)
|+.++..+..+.|.++++..+.+ +. ...+..+.+...+.++....... .....+.....|+
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSK---SGHKPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCS---SCCCCTTCCCCEE
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccc---cCCCCCCCCCeEE
Confidence 88777777777776654322111 10 00111122222221111111000 0001111234699
Q ss_pred EEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 008534 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (562)
Q Consensus 152 ~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~ 227 (562)
|+||+|+|+ ...+.++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||.++.. .+
T Consensus 390 ~~~v~~~y~-----~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-~~-~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYP-----SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-YD-PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCS-----STTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-SC-CSEEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEEcC-----CCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEEHHhCCHHHH
Confidence 999999983 22345799999999999999999999999999999999984 44 458999999999753 56
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCcccCCCChhHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (562)
|++||||+|++.+|+. ||+|||.|+... .+.++..+ .+++.++. +++..+|.+|.. +.+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~-----~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRED-----VTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER-GAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCSS-----CCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS-SCSSCHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCCC-----CCHHHHHHHHHHhCcHHHHHh--ccccccccccCC-CCccCHHHHH
Confidence 7889999999999975 999999998421 22222222 12344443 467788988754 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~e 382 (562)
||+|||||+++|+|||||||||+||+.++..+.+.|+++. +|+|+|+|+|+++. + ..||+|++|++|++++.|++++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 48999999999864 4 5699999999999999999999
Q ss_pred HHH
Q 008534 383 AMA 385 (562)
Q Consensus 383 l~~ 385 (562)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 40
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.1e-46 Score=378.40 Aligned_cols=215 Identities=30% Similarity=0.484 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.|+++||+|+|. ....+++|+||||+|++||+++|+||||||||||+++|+|.+. + +|+|.++|.++..
T Consensus 17 ~l~i~~l~~~y~-----~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 17 NIEFSDVNFSYP-----KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CEEEEEEEECCT-----TCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeC-----CCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCH
Confidence 699999999872 1112579999999999999999999999999999999999653 4 7999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCcccCCCC
Q 008534 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 -~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (562)
.+++.|+||+|++.+|+ .||+||+.|+.. .... +++.++++.+++ ++..++.++ ..+.+||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LS 157 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLS 157 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCC
Confidence 35678999999999996 599999998531 1111 234455555554 444555543 3467899
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||++.. + ..||+|++|++|++++.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 8999999999864 4 56999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 235 g~~~~l~~ 242 (260)
T 2ghi_A 235 GTHKDLLK 242 (260)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998764
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-46 Score=369.03 Aligned_cols=202 Identities=22% Similarity=0.378 Sum_probs=171.9
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++| ++ ++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. ..
T Consensus 9 ~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~ 76 (214)
T 1sgw_A 9 SKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KV 76 (214)
T ss_dssp CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GG
T ss_pred ceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hh
Confidence 379999999987 24 79999999999999999999999999999999999653 56899999999876 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++.|+||+|++.+|+.+||+||+.++...... . .. .+++.++++.+||.+. +. .+.+|||||||||+||
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLA 145 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHH
Confidence 77899999999999999999999987543210 1 11 3467889999999765 54 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|+++ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999997668999999999864 66778887755 4554
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-45 Score=372.84 Aligned_cols=211 Identities=24% Similarity=0.282 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~ 227 (562)
+|+++||+++|... ...+++|+|+||+|+ |++++|+||||||||||+++|+|.+ | .+|+|.++|.++.. ..
T Consensus 1 ml~~~~l~~~y~~~----~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p-~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGK----GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--P-YSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEE----TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--C-CEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCC----CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--C-CCcEEEECCEECcchHH
Confidence 37899999998310 011579999999999 9999999999999999999999954 4 48999999998742 12
Q ss_pred cCcEE-EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHH
Q 008534 228 KSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (562)
Q Consensus 228 ~~~ig-yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (562)
++.|+ ||+|++.+ .+||+||+.++.... .. ..+++.++++.++|. +..++. +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 56799 99999987 689999999875432 11 134578899999998 766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC-EEEEEcCCeEEEecChHHHH
Q 008534 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~~el~ 384 (562)
|||||+.+|++|||||||+|||+.++..+++.|+++++ |||++||++.. +..+|| ++++|++|++++.|+++++.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~-~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDM-LNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGG-GGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHH-HHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998753 99999999754 667899 99999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
+
T Consensus 215 ~ 215 (263)
T 2pjz_A 215 E 215 (263)
T ss_dssp T
T ss_pred h
Confidence 3
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2e-45 Score=364.47 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=166.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+++|. .+++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS-------
T ss_pred ceEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC-------
Confidence 3699999999872 124679999999999999999999999999999999999653 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (562)
+|+||+|++.+|+. ||+||+.|+.. .... +..+.++.+++.+ ..++.++ ..+.+|||||
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGq 135 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQ 135 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHH
Confidence 49999999999985 99999998531 1111 1222333333322 2233333 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
||||+|||||+.+|+||||||||+|||+.++..+++. ++++. +|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~G~i~~~g~ 212 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999997 45554 48999999999753 4 4699999999999999999
Q ss_pred hHHHH
Q 008534 380 ASEAM 384 (562)
Q Consensus 380 ~~el~ 384 (562)
++++.
T Consensus 213 ~~~~~ 217 (229)
T 2pze_A 213 FSELQ 217 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=364.50 Aligned_cols=211 Identities=23% Similarity=0.397 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
+|+++||+++|. ..++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS--------
T ss_pred eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC--------
Confidence 489999999972 114679999999999999999999999999999999999543 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
.|+||+|++.++ .+||+|||.++... .. ..........++.+.+++. ...++.++ ..+.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~~~-~~tv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAWIQ-NDSLRENILFGCQL--EE--PYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCCCC-SEEHHHHHHTTSCC--CT--THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCcCC-CcCHHHHhhCcccc--CH--HHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 399999998765 68999999986321 11 1111111111122233332 22233332 45678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~---~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|. ++. +|+|||++||++.. + ..||+|++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 48999999999875 4 579999999999999999999875
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-46 Score=393.19 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=180.7
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++||+++|. ...+.+|+||||+|++||+++|+|||||||||||++|+|.+ + .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCC
Confidence 4699999999982 23567999999999999999999999999999999999954 3 58999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccC------cccCCCC
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVS 297 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~------~~~~~LS 297 (562)
.+++.||||||++.+|+ +||+||+.+.. ... .+++.++++.++|.+..+..+.. .....||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 35678999999999997 69999997421 111 24567888899987665554321 1123499
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
|||||||+|||||+.+|+||||||||++||+.++..+.+.|+++. .++|+|++||++. ....||+|++|++|+|++.
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4899999999964 3467999999999999999
Q ss_pred cChHHHHH
Q 008534 378 GKASEAMA 385 (562)
Q Consensus 378 G~~~el~~ 385 (562)
|+++++..
T Consensus 235 g~~~el~~ 242 (390)
T 3gd7_A 235 DSILELYH 242 (390)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHh
Confidence 99999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.7e-46 Score=446.87 Aligned_cols=221 Identities=25% Similarity=0.479 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..++++||+|+|+ ...+.++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++..
T Consensus 1029 g~i~~~~v~~~y~-----~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~-p~~G~I~i~g~~i~~~~ 1101 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYP-----TRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YD-PMAGSVFLDGKEIKQLN 1101 (1284)
T ss_dssp CCEEEEEEEBCCS-----CGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SC-CSEEEEESSSSCTTSSC
T ss_pred CcEEEEEEEEECC-----CCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEcccCC
Confidence 4699999999983 12245799999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCcccCCCCh
Q 008534 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 226 --~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (562)
.+|++|+||||++.+|+ .||+|||.++...+ ..+.++..+. +++.++ .+++.+||.+|.. +..|||
T Consensus 1102 ~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSg 1174 (1284)
T 3g5u_A 1102 VQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSG 1174 (1284)
T ss_dssp HHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCH
T ss_pred HHHHHhceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hCccccccccCCC-CCccCH
Confidence 46888999999999996 69999999864221 1223222221 222332 4577889999854 567999
Q ss_pred hHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 299 GqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
||||||+|||||+++|+||||||||+|||+.++..|.+.|+++. +|+|||+|+||++. + ..||||++|++|++++.|
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 58999999999875 4 669999999999999999
Q ss_pred ChHHHHH
Q 008534 379 KASEAMA 385 (562)
Q Consensus 379 ~~~el~~ 385 (562)
+|+++++
T Consensus 1252 ~~~~l~~ 1258 (1284)
T 3g5u_A 1252 THQQLLA 1258 (1284)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999875
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2e-42 Score=354.58 Aligned_cols=200 Identities=29% Similarity=0.459 Sum_probs=152.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+|. .+++|+||||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 40 ~l~~~~l~~~----------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-------- 99 (290)
T 2bbs_A 40 SLSFSNFSLL----------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-------- 99 (290)
T ss_dssp --------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--------
T ss_pred eEEEEEEEEc----------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--------
Confidence 6999999984 2469999999999999999999999999999999999643 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCcccCCCChhHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGER 301 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGqr 301 (562)
+|+||+|++.+|+. ||+||+. +. .. ... .+.+.++.+++.+ ..++.++ ..+.+||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQR 165 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHH
Confidence 49999999999985 9999998 42 11 111 1223334444432 2233333 23578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 302 qRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|||+|||||+.+|+||||||||+|||+.++..+++.+ +++. +|+|||++||++.. + ..||+|++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999974 4554 48999999999753 4 56999999999999999999
Q ss_pred HHHHH
Q 008534 381 SEAMA 385 (562)
Q Consensus 381 ~el~~ 385 (562)
+++..
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.9e-38 Score=351.57 Aligned_cols=205 Identities=23% Similarity=0.304 Sum_probs=174.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+
T Consensus 356 ~~l~~~~l~~~~---------~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~--------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY---------GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW--------- 415 (607)
T ss_dssp EEEEECCEEEEC---------SSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------
T ss_pred eEEEEeceEEEe---------cceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------
Confidence 479999999987 1247999999999999999999999999999999999653 55899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...||||+|++.+++.+||.|++.+.... .....+++.++++.++|.+..++. +.+|||||||||+||
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSS-------KLNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHH-------HHHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhcc-------CCCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 24699999998877789999998764110 001134577889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++|||+. .+..+||+|++|++ |++++.|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999964 5899999999975 46788999999986 8889999998876
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 5
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.6e-38 Score=348.55 Aligned_cols=205 Identities=23% Similarity=0.313 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~---------~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~--------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDY---------GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW--------- 345 (538)
T ss_dssp EEEEECCEEEEE---------TTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------
T ss_pred eEEEEeeEEEEE---------CCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------
Confidence 479999999987 1247999999999999999999999999999999999643 55899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...|+||+|++.+++.+||.|++........ ...+++.++++.+++.+..++. +..|||||||||+||
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDRE-----VNELSGGELQRVAIA 413 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSB-----GGGCCHHHHHHHHHH
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 2469999999887778999998875411100 0124577888999997666554 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+||+|++|++ |+++..|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999974 5999999999975 47789999999986 7899999998876
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 5
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.4e-37 Score=340.43 Aligned_cols=206 Identities=23% Similarity=0.268 Sum_probs=171.0
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..++++|+++.| +...|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.+++
T Consensus 268 ~~l~~~~l~~~~---------~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKL---------GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK------- 329 (538)
T ss_dssp EEEEECCEEEEE---------TTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC-------
T ss_pred ceEEEcceEEEE---------CCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-------
Confidence 469999999987 2256888999999999999999999999999999999653 5689998765
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
..++|++|+......+||+||+.+....... . ....+.++++.++|.+..+.. +.+|||||||||+||
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDALS-T-----SSWFFEEVTKRLNLHRLLESN-----VNDLSGGELQKLYIA 397 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSB-----GGGCCHHHHHHHHHH
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 3589999998766678999999874211110 0 123467788889998766654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|.|||+||||+. .+..+||||++|++ |.+...+++.++.
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999999975 5899999999975 47789999999986 5677777765543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-36 Score=343.52 Aligned_cols=207 Identities=25% Similarity=0.387 Sum_probs=140.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC------CccEEEECCE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPT------VGGSITYNDH 221 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl---------------------~~L~G~l~~~~------~~G~I~i~G~ 221 (562)
.+.+|+||||+|++||+++|+||||||||||+ +++.|... |. ..|.|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence 45799999999999999999999999999998 77776432 22 1467778877
Q ss_pred eCChhccCcEEEEccCCC-------------------CCCCCCHHHHHHHHHhhCCCCCccHHHHH------HHHHHHHH
Q 008534 222 PYSKSLKSKIGFVTQDDV-------------------LFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAIDVIN 276 (562)
Q Consensus 222 ~~~~~~~~~igyV~Q~~~-------------------l~~~lTV~enl~~~~~~~~~~~~~~~~~~------~~v~~~l~ 276 (562)
+.....++.++||+|.+. .++.+||+||+.+......... ...... ....++++
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 654433445666665433 2456899999987532211100 000000 11224578
Q ss_pred HcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec
Q 008534 277 ELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (562)
Q Consensus 277 ~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH 353 (562)
.+||.+. .++ .+.+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8898754 344 356899999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 354 QPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 354 ~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
++. ....||+|++| ++|++++.|+++++.
T Consensus 263 d~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CHH--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CHH--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 975 34569999999 899999999998875
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.2e-35 Score=339.62 Aligned_cols=198 Identities=22% Similarity=0.307 Sum_probs=165.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|...|+++.| +++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+....
T Consensus 435 ~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~-- 494 (986)
T 2iw3_A 435 DLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE-- 494 (986)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT--
T ss_pred eeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc--
Confidence 57777999988 35679999999999999999999999999999999995 222 34443222
Q ss_pred CcEEEEccCC-CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCChhHHHHHHH
Q 008534 229 SKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~-~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
.+++|++|+. .+++.+||.||+.+ ... .. .+++.++++.+||. +..+.. +.+|||||||||+|
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLAL 559 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHHH
Confidence 2478999985 67888999999976 111 11 45678899999995 455554 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEE-EecChHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~el~~ 385 (562)
||||+.+|+||||||||+|||+.++..+.+.|++ .|.|||++||++. .+..+||+|++|++|+++ +.|+++++..
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999987 5899999999965 477899999999999997 6899988764
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=331.86 Aligned_cols=202 Identities=23% Similarity=0.257 Sum_probs=164.5
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~G-----e~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
++++|.|. ....+++|+||++.+| |+++|+||||||||||+++|+|.+. +.+|+. + .
T Consensus 350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---C
T ss_pred cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---c
Confidence 45566662 1235899999999999 7899999999999999999999653 457752 2 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
+..++|++|+.......||+|++...... ... ....+.++++.++|.+..+.. +.+|||||||||+||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQE-----VQHLSGGELQRVAIV 479 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSSB-----SSSCCHHHHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHHH
Confidence 34699999997665567999988643211 111 123466789999998776654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCCEEEEEcC--CeEEEecChHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~el~ 384 (562)
|||+.+|+||||||||+|||+.++..+++.|+++. +.|+|||++|||+. .+..+||||++|++ |+++..|++++++
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 99999999999999999999999999999999986 45999999999975 47789999999997 8999999999887
Q ss_pred H
Q 008534 385 A 385 (562)
Q Consensus 385 ~ 385 (562)
.
T Consensus 559 ~ 559 (608)
T 3j16_B 559 T 559 (608)
T ss_dssp H
T ss_pred h
Confidence 5
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-35 Score=329.01 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=155.4
Q ss_pred EEE-EeEEEEEeecccCCcccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE---------EE
Q 008534 150 LKF-TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TY 218 (562)
Q Consensus 150 l~~-~nvs~~y~~~~~~~~~~~-~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I---------~i 218 (562)
.++ +||+++| +++ .+|+||| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .+
T Consensus 21 ~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhh
Confidence 455 5899987 123 5899999 999999999999999999999999999653 457875 45
Q ss_pred CCEeCCh------hccCcEEEEccCCCCCCC---CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Q 008534 219 NDHPYSK------SLKSKIGFVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289 (562)
Q Consensus 219 ~G~~~~~------~~~~~igyV~Q~~~l~~~---lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 289 (562)
+|.++.. ..+..+++++|+..+++. .|+.|++.... ..+++.++++.+||.+..+..
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-- 155 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-- 155 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB--
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC--
Confidence 6665421 112458899997544332 38999886421 013467889999998766654
Q ss_pred CcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+.|.|||+|||++. .+..+||+|++|
T Consensus 156 ---~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 156 ---IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999878999999999975 577889999999
Q ss_pred cCC
Q 008534 370 GKG 372 (562)
Q Consensus 370 ~~G 372 (562)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-35 Score=332.56 Aligned_cols=191 Identities=26% Similarity=0.367 Sum_probs=155.3
Q ss_pred EeEEEEEeecccCCcccc-ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE---------EECCEe
Q 008534 153 TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHP 222 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~-~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I---------~i~G~~ 222 (562)
+||+++| +.+ .+|+||| +|++||+++|+||||||||||+++|+|.+. +.+|++ .++|.+
T Consensus 95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEe
Confidence 7888887 123 5899999 999999999999999999999999999653 457885 456765
Q ss_pred CCh------hccCcEEEEccCCCCCC---CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCccc
Q 008534 223 YSK------SLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (562)
Q Consensus 223 ~~~------~~~~~igyV~Q~~~l~~---~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (562)
+.. ..+..+++++|...+++ ..||.||+.... . .+++.++++.+||.+..++. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~------~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------E------VGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------C------SSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------H------HHHHHHHHHHcCCCchhCCC-----h
Confidence 422 11345889998743322 139999986410 0 12467889999998777664 4
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+.|.|||++||++. .+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 689999999999999999999999999999999999999999999999877999999999975 467789999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-35 Score=340.54 Aligned_cols=208 Identities=21% Similarity=0.371 Sum_probs=161.4
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||+|+|. +..+++|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~------ 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN------ 735 (986)
T ss_dssp EEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT------
T ss_pred ceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc------
Confidence 4799999999871 123679999999999999999999999999999999999653 56899999863
Q ss_pred cCcEEEEccCCCC----CCCCCHHHHHHHHHhhC------------CC--------------------------------
Q 008534 228 KSKIGFVTQDDVL----FPHLTVKETLTYAALLR------------LP-------------------------------- 259 (562)
Q Consensus 228 ~~~igyV~Q~~~l----~~~lTV~enl~~~~~~~------------~~-------------------------------- 259 (562)
.+|+||+|++.. ....|+.+++.+..... ..
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 258999998631 12468888887632100 00
Q ss_pred --------------------CC--------ccH--------------------------HHHHHHHHHHHHHcCCCcc--
Q 008534 260 --------------------NT--------LTK--------------------------QQKEKRAIDVINELGLERC-- 283 (562)
Q Consensus 260 --------------------~~--------~~~--------------------------~~~~~~v~~~l~~lgL~~~-- 283 (562)
.. +.. ....+++.++++.+||.+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 00 000 0013457889999999742
Q ss_pred ccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
.+. .+.+|||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||++||++. .+..+|
T Consensus 895 ~~~-----~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~ 965 (986)
T 2iw3_A 895 SHS-----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLT 965 (986)
T ss_dssp HHS-----CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTC
T ss_pred cCC-----CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhC
Confidence 343 35689999999999999999999999999999999999999999888764 679999999965 466789
Q ss_pred CEEEEEcCCeEEEecC
Q 008534 364 DKLILLGKGSLLYFGK 379 (562)
Q Consensus 364 D~i~vL~~G~iv~~G~ 379 (562)
|+|++|++|+++..|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=4e-34 Score=324.08 Aligned_cols=199 Identities=27% Similarity=0.447 Sum_probs=149.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC---------------CCCCCccEEEECCEeCChhc-
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RL---------------MEPTVGGSITYNDHPYSKSL- 227 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G-----~l---------------~~~~~~G~I~i~G~~~~~~~- 227 (562)
...+|+||||+|++||++||+||||||||||+++|.+ .+ .. ...|.|.++|.++....
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTT
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCC
Confidence 3468999999999999999999999999999987641 00 00 12467888887763100
Q ss_pred --------------------------------------------cCcEEEEccCCCCCC---------------------
Q 008534 228 --------------------------------------------KSKIGFVTQDDVLFP--------------------- 242 (562)
Q Consensus 228 --------------------------------------------~~~igyV~Q~~~l~~--------------------- 242 (562)
....|+++|+..+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 011244444433332
Q ss_pred -----------CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHH
Q 008534 243 -----------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 243 -----------~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
.+||+||+.|... .. ...++.+.+..++|... .+ .++.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~~---~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------CH---HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------hh---hHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHH
Confidence 4799999987531 11 12345677888888642 23 34578999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChH
Q 008534 311 IINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKAS 381 (562)
Q Consensus 311 l~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~ 381 (562)
+.+| +||||||||+|||+.++..+++.|++++++|+|||+|||++.. ...||+|++| ++|+|++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9887 5999999999999999999999999998889999999999753 4679999999 899999999999
Q ss_pred HHH
Q 008534 382 EAM 384 (562)
Q Consensus 382 el~ 384 (562)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4e-33 Score=307.95 Aligned_cols=180 Identities=20% Similarity=0.262 Sum_probs=139.9
Q ss_pred eeceEEE-EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE-----------EECCEeCChh----c--cCcEEEE
Q 008534 173 LNGITGS-VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS----L--KSKIGFV 234 (562)
Q Consensus 173 L~~vs~~-i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I-----------~i~G~~~~~~----~--~~~igyV 234 (562)
++-..+. +++||++||+||||||||||+|+|+|.+. +.+|+| .++|.++... . ...+..+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~ 91 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHK 91 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEE
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhc
Confidence 3444444 45999999999999999999999999653 457988 5777765321 1 1224444
Q ss_pred ccC----CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 235 TQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 235 ~Q~----~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
.|. +.++. .+|++++.... ..+++.++++.+++.+..++. +.+|||||||||+|||||
T Consensus 92 ~~~~~~~~~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 92 IQYVEYASKFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASL 153 (538)
T ss_dssp CSCTTGGGTTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHH
Confidence 443 33443 48888765321 112466788999998777664 468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 311 l~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
+.+|+||||||||++||+.++..+.+.|+++.+ |+|||+|+|++. .+..+||+|++|++|..
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 999999999999999999999999999999976 999999999975 57889999999987643
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-33 Score=308.42 Aligned_cols=188 Identities=26% Similarity=0.314 Sum_probs=142.4
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE-----------EECCEeCCh----hccCcE--E
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSKI--G 232 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I-----------~i~G~~~~~----~~~~~i--g 232 (562)
...|++++ .+++||+++|+||||||||||||+|+|.+. +.+|+| .+.|.++.. .....+ .
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 35788877 689999999999999999999999999653 457987 233333211 111222 2
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 233 FVTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 233 yV~Q~~~l------~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
+.+|.... -+..++.+++.... . ...+++.++++.+||.+..++. +.+|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~------~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM----E------KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC----C------SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh----h------hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 33443211 11235666554321 0 1124678899999998877764 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEE
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
||||+.+|+||||||||++||+.++..+.+.|+++.++|+|||+++|++. .+..+||+|++|++|..++
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999888999999999975 4778999999999876444
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.6e-31 Score=305.41 Aligned_cols=200 Identities=27% Similarity=0.479 Sum_probs=153.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC----CCc------cEEEECCEeCChh----
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 226 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl---------~~L~G~l~~~----~~~------G~I~i~G~~~~~~---- 226 (562)
...|+||||+|++|++++|+||||||||||+ +++.+....+ ... +.|.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3579999999999999999999999999997 4444421100 011 3456665554210
Q ss_pred -----------------------------------------ccCcEEEEccCCCCCCC----------------------
Q 008534 227 -----------------------------------------LKSKIGFVTQDDVLFPH---------------------- 243 (562)
Q Consensus 227 -----------------------------------------~~~~igyV~Q~~~l~~~---------------------- 243 (562)
..+..||+.++..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788887766653
Q ss_pred ----------CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 244 ----------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 244 ----------lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
+||.|++.|... . ....++.++|+.+||.... + +..+.+|||||||||+|||||+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 678888887431 1 1234567889999996421 1 234678999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 314 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 314 P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
| +||||||||+|||+.+...+++.|++++++|.|||+|+|+++ +...||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 5 799999999999999999999999999888999999999975 34679999999 899999999999986
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=2.5e-31 Score=306.13 Aligned_cols=208 Identities=27% Similarity=0.439 Sum_probs=159.2
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC----CCC----Ccc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLM----EPT----VGG 214 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G----~l~----~~~----~~G 214 (562)
..|+++|++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. .+. ..|
T Consensus 628 ~~L~v~~l~~-------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G 694 (972)
T 2r6f_A 628 RWLEVVGARE-------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRG 694 (972)
T ss_dssp CEEEEEEECS-------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEEC
T ss_pred eEEEEecCcc-------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecc
Confidence 3588887741 3699999999999999999999999999999853 2 111 110 113
Q ss_pred ------EEEECCEeCChhc-----------------------cCcEEEEccCCCCC----------------------C-
Q 008534 215 ------SITYNDHPYSKSL-----------------------KSKIGFVTQDDVLF----------------------P- 242 (562)
Q Consensus 215 ------~I~i~G~~~~~~~-----------------------~~~igyV~Q~~~l~----------------------~- 242 (562)
.|.++|.++.... .+.+||++|.+.+. +
T Consensus 695 ~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~ 774 (972)
T 2r6f_A 695 LEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPD 774 (972)
T ss_dssp GGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCC
T ss_pred ccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccc
Confidence 5888988863110 12357777753221 1
Q ss_pred -------------------------------CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccC
Q 008534 243 -------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGG 290 (562)
Q Consensus 243 -------------------------------~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~ 290 (562)
.+||.|++.|... ... ..++.++++.+||.. ..+.
T Consensus 775 v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~---- 841 (972)
T 2r6f_A 775 VYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQ---- 841 (972)
T ss_dssp EEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTC----
T ss_pred ccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccC----
Confidence 3578888776421 111 234567899999975 3443
Q ss_pred cccCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEE
Q 008534 291 SFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~ 367 (562)
.+.+|||||||||+||++|+.+| +||||||||+|||+.+...+++.|+++++.|.|||+|+|++.. ...||+|+
T Consensus 842 -~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIi 918 (972)
T 2r6f_A 842 -PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDV--IKTADYII 918 (972)
T ss_dssp -CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEE
T ss_pred -chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEE
Confidence 45689999999999999999865 9999999999999999999999999998889999999999753 46899999
Q ss_pred EE------cCCeEEEecChHHHH
Q 008534 368 LL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 368 vL------~~G~iv~~G~~~el~ 384 (562)
+| ++|++++.|+++++.
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHH
T ss_pred EEcCCCCCCCCEEEEecCHHHHH
Confidence 99 789999999999875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=4.4e-31 Score=303.25 Aligned_cols=208 Identities=27% Similarity=0.425 Sum_probs=156.5
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC------CC----------
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRLM------EP---------- 210 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~-L~G~l~------~~---------- 210 (562)
..|+++|+++ .+|+||||+|++|++++|+|+||||||||+++ |+|.+. .+
T Consensus 501 ~~L~v~~l~~-------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 501 GWLELNGVTR-------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp CEEEEEEEEE-------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred ceEEEEeeee-------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 3699999864 26999999999999999999999999999996 664321 01
Q ss_pred -------CCcc-------EEEECCEeCChhcc-----------------------CcEEEEcc-----------------
Q 008534 211 -------TVGG-------SITYNDHPYSKSLK-----------------------SKIGFVTQ----------------- 236 (562)
Q Consensus 211 -------~~~G-------~I~i~G~~~~~~~~-----------------------~~igyV~Q----------------- 236 (562)
+..| .|.++|.++....+ +.+||.++
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 1356 78999987642111 11122221
Q ss_pred -----CCCCCC------------------------C--------CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcC
Q 008534 237 -----DDVLFP------------------------H--------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279 (562)
Q Consensus 237 -----~~~l~~------------------------~--------lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 279 (562)
+..+++ . +|+.|++.|.. .. . ...++.++++.+|
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~g 718 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE-S--AIFRALDTLREVG 718 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS-H--HHHHHHHHHHHTT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc-h--HHHHHHHHHHHcC
Confidence 212222 2 34455444421 11 1 2246788999999
Q ss_pred CCcc-ccccccCcccCCCChhHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 280 LERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 280 L~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~---P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
|... .+. .+..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|+++++.|.|||+|+|++
T Consensus 719 L~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 719 LGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp CTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 9753 233 4578999999999999999996 799999999999999999999999999988899999999997
Q ss_pred ChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 356 SSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 356 ~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 794 ~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 794 Q-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 35 789999999 799999999999874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=7e-31 Score=303.42 Aligned_cols=208 Identities=25% Similarity=0.393 Sum_probs=156.6
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCCC-CCcc--------
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLMEP-TVGG-------- 214 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-----G~l~~~-~~~G-------- 214 (562)
.|+++|++. .+|+||||+|++|++++|+|+||||||||+++|. +.+... +..|
T Consensus 647 ~L~v~~l~~-------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~ 713 (993)
T 2ygr_A 647 QLTVVGARE-------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGL 713 (993)
T ss_dssp EEEEEEECS-------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCC
T ss_pred eEEEecCcc-------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCc
Confidence 588887741 2699999999999999999999999999999853 222110 0122
Q ss_pred -----EEEECCEeCChh-----------------------ccCcEEEEccCCCC----------------------CC--
Q 008534 215 -----SITYNDHPYSKS-----------------------LKSKIGFVTQDDVL----------------------FP-- 242 (562)
Q Consensus 215 -----~I~i~G~~~~~~-----------------------~~~~igyV~Q~~~l----------------------~~-- 242 (562)
.|.+++.++... ..+.+||++|...+ ++
T Consensus 714 ~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v 793 (993)
T 2ygr_A 714 DYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDV 793 (993)
T ss_dssp TTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCE
T ss_pred cccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccc
Confidence 356666665210 01235777775322 11
Q ss_pred ------------------------------CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCc
Q 008534 243 ------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGS 291 (562)
Q Consensus 243 ------------------------------~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~ 291 (562)
.+||.|++.|... ... ..++.++++.+||.. ..+.
T Consensus 794 ~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~----- 859 (993)
T 2ygr_A 794 YVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQ----- 859 (993)
T ss_dssp EEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTC-----
T ss_pred eeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccC-----
Confidence 2577777776421 111 234567899999975 3333
Q ss_pred ccCCCChhHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 292 FVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P---~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
.+..|||||||||+||++|+.+| +||||||||+|||+.+...+++.|+++++.|.|||+|+|++.. ...||+|++
T Consensus 860 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~--i~~aDrIiv 937 (993)
T 2ygr_A 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDV--IKTSDWIID 937 (993)
T ss_dssp CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHH--HTTCSEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH--HHhCCEEEE
Confidence 45689999999999999999865 9999999999999999999999999998889999999999753 468999999
Q ss_pred E------cCCeEEEecChHHHHH
Q 008534 369 L------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 369 L------~~G~iv~~G~~~el~~ 385 (562)
| ++|++++.|+++++..
T Consensus 938 L~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 938 LGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EESSSTTSCSEEEEEECHHHHHH
T ss_pred ECCCcCCCCCEEEEecCHHHHHh
Confidence 9 7899999999998754
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=9.9e-30 Score=271.07 Aligned_cols=203 Identities=16% Similarity=0.227 Sum_probs=147.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------CCCcc
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVGG 214 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~------------------------------------~~~~G 214 (562)
.+|++++|++.+| +++|+|||||||||||++|.+.+.. .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 9999999999999999999764421 12368
Q ss_pred EEEECCEeCCh----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC-----------------------CCc----
Q 008534 215 SITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----------------------NTL---- 262 (562)
Q Consensus 215 ~I~i~G~~~~~----~~-~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~-----------------------~~~---- 262 (562)
.+.+||++++. .+ +..+++++|++.++. .+..+...|....... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999863 22 334899999987765 3665555443211000 000
Q ss_pred ------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 008534 263 ------------------------------TKQQKEKRAIDVINELGLERCQ----------------DT---MIGG--- 290 (562)
Q Consensus 263 ------------------------------~~~~~~~~v~~~l~~lgL~~~~----------------~t---~vg~--- 290 (562)
........+.+.++.+++++.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0000122344556666654310 00 1110
Q ss_pred ---cccCC-CChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 ---SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ---~~~~~-LSGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..|.+.|++++ +|.|||+|||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 11222 6999999999999999999 9999999999999999999999999998 5899999999973 567899
Q ss_pred EEEEE----cCCeEEEec
Q 008534 365 KLILL----GKGSLLYFG 378 (562)
Q Consensus 365 ~i~vL----~~G~iv~~G 378 (562)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-32 Score=295.35 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=155.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-E-EEECCEeCChh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKS 226 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~-I~i~G~~~~~~ 226 (562)
+++++||++.| .++||++++|++++|+||||||||||+|+|+|... +.+| + |.+||.
T Consensus 118 mi~~~nl~~~y--------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~----- 176 (460)
T 2npi_A 118 MKYIYNLHFML--------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD----- 176 (460)
T ss_dssp HHHHHHHHHHH--------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----
T ss_pred hhhhhhhhehh--------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----
Confidence 57888888765 27999999999999999999999999999999543 5689 8 999983
Q ss_pred ccCcEEEEccCCC---CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 227 LKSKIGFVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 227 ~~~~igyV~Q~~~---l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
.++.++||||+.. +++.+||+||+ |+....... . ..+++.++++.+|+.+..+ +.+||||||||
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qr 243 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQ 243 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHH
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHH
Confidence 3677999999985 34457999999 654321110 0 1123445677788876544 35899999999
Q ss_pred HHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC--h---HHHhcCCE-----E
Q 008534 304 VCIGNE--IIINPSL----LFLDE-PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS--S---RLFHKFDK-----L 366 (562)
Q Consensus 304 v~IAra--Ll~~P~i----LlLDE-PTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~--~---~i~~~~D~-----i 366 (562)
|+|||| |+.+|++ ||||| ||++||+. ...+.+.+++ .++|+|+++|+.. . .+..+||+ |
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v 319 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI 319 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEE
Confidence 999999 9999999 99999 99999999 5555555443 3789999999976 1 35578999 9
Q ss_pred EEEc-CCeEEEecChHHHH
Q 008534 367 ILLG-KGSLLYFGKASEAM 384 (562)
Q Consensus 367 ~vL~-~G~iv~~G~~~el~ 384 (562)
++|+ +|+++ .|+++++.
T Consensus 320 i~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 320 FFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99987763
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=3.8e-26 Score=241.05 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.1
Q ss_pred cccCCCChhHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ~~~~~LSGGqrqRv~IAraLl------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+|||++. ....||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 456789999999999999999 699999999999999999999999999999878999999999975 367899
Q ss_pred EEEEEcCCeEEE
Q 008534 365 KLILLGKGSLLY 376 (562)
Q Consensus 365 ~i~vL~~G~iv~ 376 (562)
+|++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=7.9e-26 Score=234.32 Aligned_cols=205 Identities=18% Similarity=0.171 Sum_probs=129.4
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------------------------------------- 208 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~--------------------------------------------- 208 (562)
+++++++.+| +++|+||||||||||+++|...+-
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678999999 999999999999999999984320
Q ss_pred ---CCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhhC-----------CCCCccHHHHHHH
Q 008534 209 ---EPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-----------LPNTLTKQQKEKR 270 (562)
Q Consensus 209 ---~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~-----------~~~~~~~~~~~~~ 270 (562)
..+.+|.+.+||.++.. .....+++.+|+..+++..++.+++......+ .+.... ....+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y-~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSY-QRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------C-HHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHH-HHHHHH
Confidence 01124688999988752 22345666666555443334555443221100 000000 000111
Q ss_pred HHHHHHHc----------------CCCccccccc-----cCcccCCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 008534 271 AIDVINEL----------------GLERCQDTMI-----GGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSG 325 (562)
Q Consensus 271 v~~~l~~l----------------gL~~~~~t~v-----g~~~~~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsg 325 (562)
..+++..+ -++...+..+ .+..+..||||||||++||++|+ .+|+||||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 11111100 0111111111 12235689999999999999997 57899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEE--EEEcCCe-EEEecChHHH
Q 008534 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL--ILLGKGS-LLYFGKASEA 383 (562)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i--~vL~~G~-iv~~G~~~el 383 (562)
||+..+..+.+.|+++. .|.|||++||++. +...||++ ++|.+|. .+.....++.
T Consensus 254 LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999999985 4889999999963 56889987 8888885 4555555553
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=2.4e-29 Score=245.76 Aligned_cols=140 Identities=19% Similarity=0.286 Sum_probs=100.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---hhccCcEEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~~~~~~igyV~Q~~~l~~~lT 245 (562)
.+.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|.. .++. ...++.||||+|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 45799996 89999999999999999999999995 3 45788842 2221 23467799999986
Q ss_pred HHHHH-HHHH----hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEe
Q 008534 246 VKETL-TYAA----LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (562)
Q Consensus 246 V~enl-~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLD 320 (562)
+||+ .+.. .... .. ..+++.++++. + + ||||||+|||||+.+|+|||||
T Consensus 76 -~enl~~~~~~~~~~~~~--~~----~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLD 129 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRD--MV----EPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILD 129 (208)
T ss_dssp -----CTTTHHHHHHHTT--TS----CTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEEC
T ss_pred -HHHHHHHHHHHHHHHHH--hc----cHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEe
Confidence 4454 2211 0100 00 01234444443 2 2 9999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|||+| ++..+++.|+++ ++|+||| +||++.
T Consensus 130 EPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 130 EAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp SGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred CCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 99999 888999999988 5689999 999965
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=2.9e-30 Score=265.72 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=135.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.|+++||+|.| . +++|+||||+|++|++++|+||||||||||+++|+|.+ +|+|
T Consensus 101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------------ 154 (305)
T 2v9p_A 101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------------ 154 (305)
T ss_dssp HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE------------
T ss_pred eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE------------
Confidence 58899999987 1 46999999999999999999999999999999999853 6888
Q ss_pred CcEEEEccCCCCCCCCCHHH-HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKE-TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~e-nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
++||+|++.+|+. |++| ||.|+. ..+. .+.+.++.+ |++.++ +..|||||||| |
T Consensus 155 --~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---A 209 (305)
T 2v9p_A 155 --LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---A 209 (305)
T ss_dssp --ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---C
T ss_pred --EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---H
Confidence 4578999999874 8887 887642 1121 355666664 555555 25799999999 9
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHH
Q 008534 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (562)
Q Consensus 308 raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f 387 (562)
|||+++|+||| ||+||+.++..+.. ++|++.. ...||+| +|++|++++.|+++++..+|
T Consensus 210 RAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 210 AVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 99999999999 99999999888752 1898763 5789999 99999999999999986555
Q ss_pred Hh
Q 008534 388 SS 389 (562)
Q Consensus 388 ~~ 389 (562)
..
T Consensus 269 ~~ 270 (305)
T 2v9p_A 269 VR 270 (305)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=2.1e-26 Score=217.12 Aligned_cols=143 Identities=14% Similarity=0.178 Sum_probs=100.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC-CCCCHHHHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYA 253 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~-~~lTV~enl~~~ 253 (562)
||||++++||+++|+||||||||||++++.+ |...+++ ..+ .++++|++.-. ..-++++++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~----d~~---~g~~~~~~~~~~~~~~~~~~~~~- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISS----DFC---RGLMSDDENDQTVTGAAFDVLHY- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEH----HHH---HHHHCSSTTCGGGHHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEcc----HHH---HHHhcCcccchhhHHHHHHHHHH-
Confidence 6899999999999999999999999999753 1111211 111 26677764210 00112222211
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 329 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~---- 329 (562)
.... ....|.....+. ....|||||||++|||||+.+|++|+|||||++||+.
T Consensus 65 ----------------~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 65 ----------------IVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ----------------HHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ----------------HHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 1111 122344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 330 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 330 ------------~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
....+.+.|++++++|.|+|++||++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558889999988777999999999965
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=2.7e-27 Score=253.06 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=135.6
Q ss_pred ccceeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 008534 169 EKDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge--------------------~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~ 228 (562)
.+.+|++||++|++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.+ +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e
Confidence 3469999999999999 999999999999999999999653 56899999998753 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh--HHHHHHH
Q 008534 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCI 306 (562)
Q Consensus 229 ~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG--qrqRv~I 306 (562)
.+|++|++ .++.+|+.||+.++.. ..++.++++.+++.+. +.. +. |||| ||||+.|
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~-~~~-----~~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY-DFF-----II-ISATRFKKNDIDI 167 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC-SEE-----EE-EESSCCCHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc-CCe-----EE-eCCCCccHHHHHH
Confidence 27899986 5677899998766421 1236778888888654 222 23 9999 9999999
Q ss_pred HHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----cEEEEEecCCCh-HHHhcCCEE
Q 008534 307 GNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 366 (562)
Q Consensus 307 AraLl~----------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~Tvii~tH~~~~-~i~~~~D~i 366 (562)
|++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|++.. .+.++||+|
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 222 678889998653 245556655
Q ss_pred E
Q 008534 367 I 367 (562)
Q Consensus 367 ~ 367 (562)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 3
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1e-24 Score=207.66 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=101.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC---h-hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~---~-~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
.++|+||||||||||+++|+|.+. |.++|.+.. . ..++++||++|++ ++.+++ ++ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~----- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-S----- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-E-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-h-----
Confidence 589999999999999999999542 444554321 1 3456799999976 222322 10 0
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 333 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAra-----Ll~~P~iLlLDE--PTsgLD~~~~~~ 333 (562)
++... +..+ +.++..||||||||++||+| |+.+|++||||| ||++||+.....
T Consensus 62 -----------------~~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 62 -----------------KFFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp -----------------TTCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred -----------------hcCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 01110 0111 23456899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCcEEEEEec---CCChHHHhcCCEEEEEcCCeEEE
Q 008534 334 IVQMLQDIAEAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLY 376 (562)
Q Consensus 334 i~~~L~~l~~~g~Tvii~tH---~~~~~i~~~~D~i~vL~~G~iv~ 376 (562)
+.+.|++ .+.|+|+++| + ...+..+||+ .+|++++
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 8888865 4678999986 4 3446667887 5567665
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=1.1e-27 Score=232.28 Aligned_cols=181 Identities=18% Similarity=0.152 Sum_probs=118.0
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
..++++| .+|++|++++|+||||||||||+++|+|.+. ...+.+.+.+.+.....++.++|++|++.+|+.+|+.+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 4578888 7999999999999999999999999999653 22222222222222223567999999998888888888
Q ss_pred HHHHHHhhCC---CCCccHHHHHHHHHHH------HHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEE
Q 008534 249 TLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (562)
Q Consensus 249 nl~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlL 319 (562)
++.+...... ....++.+.++++.+. ++.+|+.+..+. +++.|| +|+.+|++++|
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~L 147 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQDL 147 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHHH
Confidence 7642210000 0122344444445444 334444333332 234566 89999999999
Q ss_pred eCCCCCC----CHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 320 DEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 320 DEPTsgL----D~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
||||+++ |+..+.++.+.++++.+ .|.|+|+++|++. ++..+||+|++|.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 9999998 78899999999999974 4899999999975 5788999999984
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=1.8e-24 Score=222.64 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=131.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCC-CC
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LF 241 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~-l~ 241 (562)
++++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .+ +..|+||+|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 467899999999999999999999999999999653 458999999988742 12 346999999998 88
Q ss_pred CCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEE
Q 008534 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 319 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlL 319 (562)
|.+||+||+.++..... . ..+++.+|+.+..+.. +.+|| |||++|||||+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~~--d----------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGY--D----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTTC--S----------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcCC--c----------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88999999998642110 0 1234566776555443 45799 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCcEEEEEecCCC--------hHHHhcCCEEEEEcCCeE
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (562)
| ||+|||+..+. +++. +.|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 99999998642 4444 34899999999322 123345678888888864
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=1.9e-25 Score=240.87 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=150.6
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE---eCC
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS 224 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~---~~~ 224 (562)
..++++|+++.|. .+..+|+++ |+|.+|++++|+||||||||||+++|+|.. . +..|.|.++|+ ++.
T Consensus 130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~-~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT-R-ADVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS-C-CSEEEEEEESCCHHHHH
T ss_pred CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEeceecHHHH
Confidence 3578899988762 145799999 999999999999999999999999999954 3 45899999998 443
Q ss_pred h---------hccCcEEEEccC-CCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccC
Q 008534 225 K---------SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (562)
Q Consensus 225 ~---------~~~~~igyV~Q~-~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (562)
. .+++.++||+|+ +.+++.+||.+|+.+.+..... ... ......+ ...
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~---------~v~~~ld------~l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQ---------HVLLIMD------SLT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTC---------EEEEEEE------CHH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCC---------CHHHHHH------hHH
Confidence 2 256779999995 5567788999999876532100 000 0001111 135
Q ss_pred CCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----EEEEEecCCChHHHhcCCE
Q 008534 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDK 365 (562)
Q Consensus 295 ~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----Tvii~tH~~~~~i~~~~D~ 365 (562)
.||+|| |||+|| +.+|++ |+|||+.+...+.+.+.++.+ + |. ||++++||++ ...||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 699999 999999 889988 999999999999999999865 3 64 9999999987 367999
Q ss_pred EEEEcCCeEEEecChHHH
Q 008534 366 LILLGKGSLLYFGKASEA 383 (562)
Q Consensus 366 i~vL~~G~iv~~G~~~el 383 (562)
+++|.+|+++..|++.++
T Consensus 325 v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHSSEEEEECHHHHHT
T ss_pred EEEEeCcEEEEeCCHHHc
Confidence 999999999999988775
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=9.2e-22 Score=226.11 Aligned_cols=108 Identities=25% Similarity=0.400 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Q 008534 269 KRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 269 ~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g 345 (562)
.++. .+..+||.+. .++ .+.+|||||||||.||++|..+| .||||||||++||+.....+++.|++|.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3443 5778898753 343 45789999999999999999999 5999999999999999999999999998889
Q ss_pred cEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 346 KTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 346 ~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
.|||+|+|++. +...||+|++| ++|++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999974 45789999999 799999999988764
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.3e-23 Score=220.89 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=132.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCC-CCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LFP 242 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~-l~~ 242 (562)
..+||++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..|+|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46889999999999999999999999999999653 358999999988742 12 356999999998 888
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEe
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 320 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLD 320 (562)
.+||+||+.++..... . ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~~--d----------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEGY--D----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTTC--S----------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCCC--H----------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999998642110 0 1234556776554443 45799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCC--------hHHHhcCCEEEEEcCCeE
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (562)
||+|||+..+. +++.+ .|.|+|++||.-. ..+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 4899999999411 123345678888888864
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=1.7e-21 Score=204.86 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.3
Q ss_pred CcccC-CCChhHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHH
Q 008534 290 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (562)
Q Consensus 290 ~~~~~-~LSGGqrqRv~IAraLl---------~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i 359 (562)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998763 699999994 42
Q ss_pred HhcCCEEEEEcCCeEEEecChHHH
Q 008534 360 FHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 360 ~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.||++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.85 E-value=1.8e-23 Score=211.94 Aligned_cols=147 Identities=19% Similarity=0.239 Sum_probs=95.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~-~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~ 263 (562)
.++|+||||||||||+|+|+|... +.+|+|.++|.++... .++.++|++|++.+++.+||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH-
Confidence 489999999999999999999543 4589999999987543 456799999999999999999999987543211 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.+.+.+.+. .+..+.. +.+||||||||++||||++. ++|||||+.|||+.. .+.++.+.+
T Consensus 80 ----~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 ----WEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ----SHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ----HHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 112223332 1222222 35799999999999999876 999999999999987 455556655
Q ss_pred CCcEEEEEecCCC
Q 008534 344 AGKTVVTTIHQPS 356 (562)
Q Consensus 344 ~g~Tvii~tH~~~ 356 (562)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999999743
No 80
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=3.2e-21 Score=201.18 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=69.9
Q ss_pred cccCCCChhHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 291 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 291 ~~~~~LSGGqrq------Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
..+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|.|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 346789999999 67778888889999999999999999999999999999877789999999994 3678999
Q ss_pred EEEEEc
Q 008534 365 KLILLG 370 (562)
Q Consensus 365 ~i~vL~ 370 (562)
+|++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=6.5e-26 Score=222.28 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----hccCcEEEEccCCCCCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-----~~~~~igyV~Q~~~l~~~l 244 (562)
..-|+||||+|++|++++|+||||||||||+++|+|.+ | |+|.+ |.++.. ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 35799999999999999999999999999999999954 3 88999 766521 2356799999998777643
Q ss_pred C-HHHHHHHHHhhCC-CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH-----HHHHhhCCCEE
Q 008534 245 T-VKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 317 (562)
Q Consensus 245 T-V~enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I-----AraLl~~P~iL 317 (562)
+ +.+++.++. ... ....+. ..+.++++...+ ..+. ..|||||+||++| +++|+.+|+++
T Consensus 84 ~~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhhh-cccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 3 112221110 000 001122 235556654322 1111 4699999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+|||||+++|..+...+.+.|.++.+ ++| ++| + ..||.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECCC
Confidence 99999999999999999999988754 344 456 2 45788877754
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=5.8e-23 Score=213.91 Aligned_cols=131 Identities=20% Similarity=0.261 Sum_probs=105.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
+++++|+.+++|++++|+||||||||||+++|+|.+ + +.+|.|+++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~-~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-P-KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-C-TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-c-CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 799999999999999999999999999999999854 3 458999999864211 1223344332
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeE
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~i 374 (562)
.++.+.|+.+...+.|+|+++|+++ ....|||+++|.+|..
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456777776643458999999976 4678999999988853
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=3.2e-24 Score=221.77 Aligned_cols=145 Identities=12% Similarity=0.131 Sum_probs=111.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEE-----------------------EeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGS-----------------------VNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
..|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+
T Consensus 42 ~~i~~~~v~~~y~----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 42 EQIDLLEVEEVYL----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCCHHHHHHTHH----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEeeehhhhhh----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 3588999988761 455665554 8999999999999999999999999
Q ss_pred cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccc
Q 008534 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (562)
Q Consensus 205 G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (562)
|.+. +..|. +.++||+|++.+++. |++||+.+.... +.+.....+.+.++++.++ ....
T Consensus 112 gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~d~~~~~~~L~~l~-~~~~ 170 (312)
T 3aez_A 112 ALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESYNRRALMRFVTSVK-SGSD 170 (312)
T ss_dssp HHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGBCHHHHHHHHHHHH-TTCS
T ss_pred hhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHHHHHHHHHHHHHhC-CCcc
Confidence 9653 23342 469999999999987 999998653211 1222223455677888776 3333
Q ss_pred cccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
+.. +..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 171 ~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 171 YAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 332 357999999999999999999999999999999986
No 84
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=2.4e-21 Score=224.34 Aligned_cols=163 Identities=23% Similarity=0.386 Sum_probs=122.9
Q ss_pred HHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCC---ccH--HHHHHHHHH
Q 008534 199 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTK--QQKEKRAID 273 (562)
Q Consensus 199 Ll~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~---~~~--~~~~~~v~~ 273 (562)
+..|..+|+. +..|+|.++|+++.. +..++|.+++.|......+.. ... .....+..+
T Consensus 384 C~~C~g~rl~--~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (916)
T 3pih_A 384 CSVCGGRRLN--REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLE 446 (916)
T ss_dssp CTTTCSCCBC--TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHH
T ss_pred chhcccccCC--hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHH
Confidence 3344444443 457999999987632 234688888877544322211 000 011123456
Q ss_pred HHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE
Q 008534 274 VINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350 (562)
Q Consensus 274 ~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii 350 (562)
.+..+||... .++ .+.+|||||||||+|||||+.+|+ ||||||||+|||+.....+++.|+++.+.|.|||+
T Consensus 447 ~L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 447 FLVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7888898753 343 456899999999999999999887 99999999999999999999999999888999999
Q ss_pred EecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 351 TIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
|+|++. +...||+|++| ++|++++.|++++++.
T Consensus 522 VtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 522 VEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp ECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999974 34569999999 9999999999998753
No 85
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.84 E-value=1.4e-22 Score=201.48 Aligned_cols=180 Identities=10% Similarity=0.087 Sum_probs=111.7
Q ss_pred cccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+++.+|+||||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCHh
Confidence 4678999999999999999999999999999999999843 333333 3467899999996 67789999
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD 327 (562)
+++.+......... +.....+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|||||...+|
T Consensus 77 ~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99987543211100 1111122344455443 222332 346799999999988 58888999999999988888
Q ss_pred HHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHh-cCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 328 STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 328 ~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 64 2222 3789999999732 3333 34434 6664 5677765544
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=8.5e-22 Score=200.73 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=121.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EEEECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.++|+++++.+++|++++|+||||||||||++.|+|.+. +.+| .|.+.+.... ..+++++.++.++.. +++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 3468999999999999999999999999999999998643 2346 6655443333 233334444444322 233
Q ss_pred HHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 008534 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS- 324 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl~~P~iLlLDEPTs- 324 (562)
.+++..+. ++.++..+.+.++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 95 SDSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CHHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred ccccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 34444321 11222333344444322221 111 124688998 66776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHHHHC-CcEEEEEecCCC-h--------------------HHHhcCCEEEEEcCCeE
Q 008534 325 --G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 325 --g---LD~-~~~~~i~~~L~~l~~~-g~Tvii~tH~~~-~--------------------~i~~~~D~i~vL~~G~i 374 (562)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+...||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 455 6678899999999765 999999999951 2 46779999999999874
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.3e-20 Score=207.29 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.2
Q ss_pred ccCCC-ChhHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 292 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 292 ~~~~L-SGGqrqRv~IAraLl~~P--~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999987 899999999965 4567999999
Q ss_pred EcCC
Q 008534 369 LGKG 372 (562)
Q Consensus 369 L~~G 372 (562)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9655
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.81 E-value=9.7e-22 Score=205.99 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=138.5
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--- 225 (562)
.++.+++++.|. .+..+|+++ |+|.+|++++|+||||||||||+++|+|... +..|.|.+.|++..+
T Consensus 45 ~i~~~~l~~~~~-------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 45 PLLRQVIDQPFI-------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNE 114 (347)
T ss_dssp STTCCCCCSEEC-------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHH
T ss_pred CeeecccceecC-------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHH
Confidence 577888988872 245799999 9999999999999999999999999999643 457999998875211
Q ss_pred --------hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCC
Q 008534 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (562)
Q Consensus 226 --------~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (562)
.+++.+.+++|.+ .+..+.+..... ...+.+.....+ .+..+--..+..||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS 173 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSD-----RPALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYA 173 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTT-----SCHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCC-----CCHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHH
Confidence 1334578888753 233333321110 001111111111 11111002346799
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----EEEEEecCCChHHHhcCCEEEEEc
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
+|| |||++| +.+|++ |+|||+.....+.+.++++.+ .|. ||++++|+++. .+||++++|.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~ 240 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSIL 240 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHC
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEee
Confidence 999 899999 688887 999999999999999999864 477 89999999873 5799999999
Q ss_pred CCeEEEecChHHH
Q 008534 371 KGSLLYFGKASEA 383 (562)
Q Consensus 371 ~G~iv~~G~~~el 383 (562)
+|+|+..|+.+++
T Consensus 241 dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 241 DGHIVLTRELAEE 253 (347)
T ss_dssp SEEEEBCHHHHTT
T ss_pred CcEEEEeCCHHHc
Confidence 9999999988775
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=4.5e-21 Score=225.19 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=121.1
Q ss_pred eEEEEe-----EEEEEeecccCCccccceeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE
Q 008534 149 YLKFTD-----VTYKVILKGMTSSEEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI 216 (562)
Q Consensus 149 ~l~~~n-----vs~~y~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I 216 (562)
.|+++| |++.|. +++.|++||+|.+++ |++++|+||||||||||||+| |.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-------- 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-------- 813 (1022)
T ss_dssp CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--------
T ss_pred eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--------
Confidence 599999 888762 245799999999987 999999999999999999999 8542
Q ss_pred EECCEeCChhccCcEE-EEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCC
Q 008534 217 TYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (562)
Q Consensus 217 ~i~G~~~~~~~~~~ig-yV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (562)
+..++| ||||++. .+||.|+|.. .+|+.+.... ....
T Consensus 814 ----------~~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~-----~~st 851 (1022)
T 2o8b_B 814 ----------VMAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMS-----GEST 851 (1022)
T ss_dssp ----------HHHTTTCCEESSEE---EECCCSBEEE------------------------ECC--------------CH
T ss_pred ----------HHhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhh-----chhh
Confidence 123455 9999863 3566555421 1122221111 1235
Q ss_pred CChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 296 LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~-~~i~~~L~~l~~~-g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++..|+.+.++ |.++|++||++. .+...+|++.++ +|+
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 7777765 9999999999999999999999999984 5578899998876 899999999964 455679999887 588
Q ss_pred EE--EecChH
Q 008534 374 LL--YFGKAS 381 (562)
Q Consensus 374 iv--~~G~~~ 381 (562)
+. +.|+++
T Consensus 929 ~~~~~~~~~~ 938 (1022)
T 2o8b_B 929 MACMVENECE 938 (1022)
T ss_dssp EEEC------
T ss_pred EEEEEecCcc
Confidence 87 555543
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=1.3e-22 Score=223.66 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=117.4
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCCccEEEECCEeCCh---hccCcEEEEccCCCCCC
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 242 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~--L~G~l~~~~~~G~I~i~G~~~~~---~~~~~igyV~Q~~~l~~ 242 (562)
+.++|++|++ .|++|++++|+||||||||||+++ ++|... +.+|.|+++|.+... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 5679999999 999999999999999999999999 678542 347999999987532 23467899999865321
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP 322 (562)
+ +.+ ..... . ....++++.++|.+..+. .++.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 110 00000 0 000011122222222221 12345655 4789999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhcCCEEEEEcC
Q 008534 323 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGK 371 (562)
Q Consensus 323 Ts-----gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~--------i~~~~D~i~vL~~ 371 (562)
|+ +||+..+..+.+.++.+++.|+|||+++|++... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999987899999999998752 2345999999998
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=2.2e-19 Score=207.22 Aligned_cols=135 Identities=24% Similarity=0.412 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHhhCCCCC---ccH---HHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 242 PHLTVKETLTYAALLRLPNT---LTK---QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 242 ~~lTV~enl~~~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
..+||.|++.|...+.++.. +.. ++..+++ +.+..+||... .++ .+.+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 46899999999766543321 000 2334444 46888999753 344 45689999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHH
Q 008534 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (562)
Q Consensus 315 --~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~ 384 (562)
+||||||||+|||+.....+++.|++|.+.|.|||+|+|++. . ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999974 3 4679999999 799999999998764
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=1.1e-19 Score=200.18 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
++.|++|++++|+||||||||||+++++|... + .|. +.+.|++|++. ..+.++.. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~~---~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNAY---S- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHHH---T-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHHH---H-
Confidence 45899999999999999999999999998542 2 242 12556777642 13333321 1
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 331 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~-----~~ 331 (562)
. ... +.+ +...|+....+ ..+..|||||+||+.+|+++..+|++||+| ||++||.. .+
T Consensus 331 -~--g~~-------~~~-~~~~g~~~~~~-----~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 331 -W--GMD-------FEE-MERQNLLKIVC-----AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp -T--SCC-------HHH-HHHTTSEEECC-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred -c--CCC-------HHH-HHhCCCEEEEE-----eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 1 111 111 22345544333 235689999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhcCCEEEEEcCCe
Q 008534 332 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 332 ~~i~~~L~~l~~~g~Tvii~tH~~~---------~~i~~~~D~i~vL~~G~ 373 (562)
..+.+.++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999971 34567899999999887
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.2e-19 Score=210.87 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=112.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.+.|++|++|++++|++++|+||||||||||||+|++...- ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G-----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG-----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT-----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC-----------------CccccccccchH-----
Confidence 45799999999999999999999999999999999431100 0011 111111100000
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEPTsgL 326 (562)
+..++..+|+.+. ...++|+|+++++.+|++| +.+|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0001111222211 1246888888888888888 8999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 327 DSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 327 D~~~~~~i-~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
|+.....+ ...++.+.+ .|.|+|++||+.. +..+||++..+.+|++.+.++.+++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 99998888 667777776 4899999999953 5689999999999999998877664
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=2.9e-19 Score=206.87 Aligned_cols=137 Identities=21% Similarity=0.342 Sum_probs=109.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcc------HHHHHHHHHHHHHHcCCCcc-ccccccCcccCCCChhHHHHHHHHHHHhhC
Q 008534 241 FPHLTVKETLTYAALLRLPNTLT------KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (562)
Q Consensus 241 ~~~lTV~enl~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IAraLl~~ 313 (562)
+..+||.|++.|...+.++.... -++..+++ +.+..+||... .++ .+.+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r-----~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSR-----AAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTC-----BGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCC-----CcccCCHHHHHHHHHHHHHhhC
Confidence 45689999999954443221000 02233444 45788898743 343 4568999999999999999998
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE------cCCeEEEecChHHHHH
Q 008534 314 --PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (562)
Q Consensus 314 --P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~el~~ 385 (562)
|+||||||||+|||+.....+++.|++|.+.|.|||+|+|++. .+..||+|++| ++|++++.|+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 5999999999999999999999999999888999999999974 34689999999 7999999999998764
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=3.4e-20 Score=186.95 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCC-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~-~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
++|+++| +++|++++|+||||||||||+++|+|.+. +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999998542 33 7999999877531111112222220
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
.+|+.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 122 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
+...+++ . +..|.+|++++|+.+ +...||++++|..
T Consensus 112 ~~~~~l~---~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETALR---A-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHH---H-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHH---H-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 8665443 3 346999999999965 4678999988864
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=2.4e-20 Score=183.45 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=108.4
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCCccEEEECCEeCChh---ccCcEEEEccCCCCCCCCC
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~--G~l~~~~~~G~I~i~G~~~~~~---~~~~igyV~Q~~~l~~~lT 245 (562)
.|+.+- +.|++|++++|+||||||||||+++|+ |... +.+|.+.+++...... ..+.++|++|+...++.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 344442 379999999999999999999999999 5312 2356777777654322 2345788888765555555
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsg 325 (562)
+.++....... ........ ....+-++..+...+..-..+|++++|||||++
T Consensus 96 ~~~~~~~~~~~----------~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------ccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 55543321100 00000000 012334444444444444679999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHCCcEEEEEecCCChH--------HHhcC-CEEEEEc
Q 008534 326 LD-----STTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKF-DKLILLG 370 (562)
Q Consensus 326 LD-----~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~--------i~~~~-D~i~vL~ 370 (562)
|| +..+..+.+.++.+++.|+|||+++|++... +..+| |+|++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 98 6777779999999887899999999997652 14677 9999995
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=3.2e-20 Score=180.37 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=101.6
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-----~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
.|+.+- .-|++|++++|+||||||||||+++|+|....++ .+|.|++++.+... .+++++++|+..+++. |
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~ 89 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-E 89 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-H
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-H
Confidence 444332 4799999999999999999999999998543322 23467776654211 1234555555544443 4
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHhh-------CCCEE
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIII-------NPSLL 317 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl~-------~P~iL 317 (562)
+.||+.+. ...++++ ++.+..+++++. +|+++
T Consensus 90 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 129 (231)
T 4a74_A 90 VLKHIYVA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLL 129 (231)
T ss_dssp HHHTEEEE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred HhhcEEEE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEE
Confidence 44444321 1122222 233455555554 89999
Q ss_pred EEeCCCCCCCHH-------H-----HHHHHHHHHHHHH-CCcEEEEEecCCCh---HHHhcCCEEEEEcCCe
Q 008534 318 FLDEPTSGLDST-------T-----ALRIVQMLQDIAE-AGKTVVTTIHQPSS---RLFHKFDKLILLGKGS 373 (562)
Q Consensus 318 lLDEPTsgLD~~-------~-----~~~i~~~L~~l~~-~g~Tvii~tH~~~~---~i~~~~D~i~vL~~G~ 373 (562)
++||||++||+. . ..++++.|+++++ .|.|||+++|.... .+...||++++|++|+
T Consensus 130 ilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 130 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp EEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred EECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 999999999984 2 2378888888765 49999999995331 3667899999998753
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=7.1e-19 Score=162.63 Aligned_cols=83 Identities=27% Similarity=0.320 Sum_probs=73.9
Q ss_pred CcccCCCChhHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 290 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA------raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
+..+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.+.|+|||++||++ . +...|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~-~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E-LKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G-GGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-H-HHHhC
Confidence 445788999999999876 899999999999999999999999999999999877789999999997 3 56899
Q ss_pred CEEEEE--cCCeE
Q 008534 364 DKLILL--GKGSL 374 (562)
Q Consensus 364 D~i~vL--~~G~i 374 (562)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=2.4e-21 Score=187.11 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=112.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCC--CCCCHHHHHHHHHhhC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 257 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~--~~lTV~enl~~~~~~~ 257 (562)
.++|++++|+||||||||||+++|+|.+. + .++||+|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999998532 1 589999999877 56799998765321
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHH----HHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER----KRVCIGNEIIINPSLLFLDEPTSG-------L 326 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr----qRv~IAraLl~~P~iLlLDEPTsg-------L 326 (562)
.+... ..+++.+.++.+++.+..+.. +..+|+||+ ||+++|++++.+|+++++||||++ |
T Consensus 61 ~~~~~----~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAF----DLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGB----CHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chhhh----hHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11111 223456677777776554432 357999964 788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCcEEEEEecCCC
Q 008534 327 DSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (562)
Q Consensus 327 D~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~ 356 (562)
|+.....+.+.+++. .+.|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998875 456899999999743
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=4.6e-20 Score=189.54 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=86.4
Q ss_pred EeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc-cCcE
Q 008534 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKI 231 (562)
Q Consensus 153 ~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~-~~~i 231 (562)
.||++.| +.+.++++++|+| +|+||||||||||+++|.|... .+.+| |.++|.++.... .+.+
T Consensus 2 ~~l~~~~--------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------C
T ss_pred CCCcceE--------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeE
Confidence 3667776 3567999999998 9999999999999999998512 24478 888887764321 3568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh
Q 008534 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 232 gyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl 311 (562)
++++|++.++..+||.|++.++..... .+.....+..+. +..+. +.+++|||||||+.+||+++
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~-----~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFER-----YLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHH-----HHHHHTSSCCTTCCCCCCCE
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHH-----HHHHhCHHhhhhhhhhhhhh
Confidence 999999888778999999887643210 000011111111 11122 34689999999999999885
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh
Q 008534 312 INPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS 357 (562)
Q Consensus 312 ~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~ 357 (562)
+|++||||++ ||+... +.++++.+. +.++|++.||+..
T Consensus 130 ----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999999985 999873 555665543 7888999999753
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.73 E-value=1e-18 Score=202.77 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=104.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.|++||+|++++|++++|+||||||||||||+|++.... ...|. .+... ...++++ +.+|..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~-~~~i~~~---d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE-EATIGIV---DGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS-EEEEECC---SEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch-hhhhhHH---HHHHHhCChHH
Confidence 56899999999999999999999999999999999863210 11110 01000 0112211 12222222222
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
++ .. ....+|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124689999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEE-EcCCeEEE
Q 008534 329 TTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLY 376 (562)
Q Consensus 329 ~~~~~i~-~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~v-L~~G~iv~ 376 (562)
.....+. ..++.+.+ .|.|+|++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999987 77777765 5999999999964 4566765431 34455544
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=2.2e-20 Score=209.28 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=119.2
Q ss_pred eEEEEeEEEEEeecccCCccccceeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGI----------TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
.++++||++.|.. ..+++|+.+ +++++. +||+|||||||||||++|+|.. .|..+|.|++
T Consensus 10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 79 (608)
T ss_dssp ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCC
T ss_pred hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEE
Confidence 5789999998731 123444444 355554 9999999999999999999964 3435899999
Q ss_pred CCEeCC-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 008534 219 NDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (562)
Q Consensus 219 ~G~~~~-------~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (562)
+|.++. ..+++.|+|++|++.+++.+||+||+.++...... ...++.
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~----------------~~~~~s---------- 133 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG----------------EGMGIS---------- 133 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC----------------SSSCCC----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC----------------Cccccc----------
Confidence 998852 24677899999999999999999999875321100 000111
Q ss_pred ccCCCChhHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHC--CcEEEEEecCCCh------
Q 008534 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------ 357 (562)
Q Consensus 292 ~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP------TsgLD~~~~~~i~~~L~~l~~~--g~Tvii~tH~~~~------ 357 (562)
++++.++.+....|+++|+||| |+|||+..+..+.+.++++.++ +.++++++|+.+.
T Consensus 134 ---------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 134 ---------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp ---------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred ---------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1112222223348999999999 9999999999999999997543 6788889998752
Q ss_pred HHHhc-----CCEEEEEcCCeEEEecChHHHHH
Q 008534 358 RLFHK-----FDKLILLGKGSLLYFGKASEAMA 385 (562)
Q Consensus 358 ~i~~~-----~D~i~vL~~G~iv~~G~~~el~~ 385 (562)
.+.+. ...|+|+.++.++..|+.+++.+
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 12221 24688999988888887655443
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=3.1e-19 Score=183.75 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=105.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc--cCcEEEEccCCCCCCCCCHHHHHH
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~--~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
+|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .+ +..++||+|++.++|.++|++|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999653 458999999998642 11 346999999999999899999998
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
++...... ..+++..|+.+..+ +-++..++||++|||||+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~d------------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGYD------------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTCS------------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCCC------------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 75321100 00122233322211 12455669999999999999994444 4454444
Q ss_pred HHHHHHHHHHHHC-CcEEEEEecCCC
Q 008534 332 LRIVQMLQDIAEA-GKTVVTTIHQPS 356 (562)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvii~tH~~~ 356 (562)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5566667776544 899999999843
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=8.1e-19 Score=200.53 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=106.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.+++|+||+ |++++|+||||||||||||+|+|.... +..|.+. . ..+..+++++| +|+.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p-a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P-AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S-SSEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e-hhccceeeHHH---hhccCCHHH
Confidence 46899999999 999999999999999999999985421 2345432 1 12345788877 556666666
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH--hhCCCEEEEeCC---C
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP---T 323 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL--l~~P~iLlLDEP---T 323 (562)
|+. .++|+|+++++.++++| +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 542 14789999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 324 SGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 324 sgLD~~~~-~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
++||+.+. ..+++.|.+ .|.|+|++||+.. +..++ .-.+.++++...
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 99999875 578888765 4899999999953 34554 222344555443
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.7e-19 Score=189.19 Aligned_cols=167 Identities=22% Similarity=0.180 Sum_probs=107.7
Q ss_pred ceeece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCc----cE-EEECCEeCChhccCcEEEEccCCCCCCCC
Q 008534 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244 (562)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~----G~-I~i~G~~~~~~~~~~igyV~Q~~~l~~~l 244 (562)
+.|+.+ .+.|++|++++|+||||||||||++.|++....++.. |. |++++.+.. .++++++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-
Confidence 456666 6899999999999999999999999999864323333 67 888887641 23457778887766543
Q ss_pred CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-------hCCCEE
Q 008534 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLL 317 (562)
Q Consensus 245 TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-------~~P~iL 317 (562)
++.+|+.+... . -|.+++|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 55555543210 0 1344555555555555 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecCh
Q 008534 318 FLDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (562)
Q Consensus 318 lLDEPTsgLD~~~------------~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (562)
|+||||++||+.. ..+++..|+++++ .|.|||+++|.... ....++.......|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~-~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR-PDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccc-cccccCCccccCCcceEeecCc
Confidence 9999999999862 3566777777765 48999999998542 3334455666667776665543
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.71 E-value=7.6e-20 Score=175.81 Aligned_cols=156 Identities=16% Similarity=0.173 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
|++++|+||||||||||+++|+|.+. .+| |.++|.+... .+++++||++|+. ... ++++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc---
Confidence 78999999999999999999999542 468 9999987642 3577899999975 111 11111 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 333 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv-~IAr---aLl~~P~iLlLDE--PTsgLD~~~~~~ 333 (562)
++.++ ..+..++ .+...+|+|||+++ ++++ |++.+|+|||||| |+..+|....
T Consensus 66 -----------------~~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~-- 125 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI-- 125 (189)
T ss_dssp -----------------CCCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH--
T ss_pred -----------------ccCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH--
Confidence 01111 0111333 23456999999998 4455 6899999999999 8999998654
Q ss_pred HHHHHHHHHHCCcEEEE----EecCCChHHHhcCCEEEEEcCCeEEEec
Q 008534 334 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (562)
Q Consensus 334 i~~~L~~l~~~g~Tvii----~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (562)
+.|.++.+...++|+ ++|+.+ ..+.|+|..+.+|+|+...
T Consensus 126 --~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 126 --QAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred --HHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444554444555554 238854 2467888888899988754
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=1.8e-18 Score=198.64 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=110.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
++.+++|++|+ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..+++++| +|+.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHHH
Confidence 46799999999 99999999999999999999999985321 1122 12211 1234666665 555666666
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+..+ + ..+|+++++ ++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 65321 1 235666654 4555566899999999999999999
Q ss_pred HHHHHH-HHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC
Q 008534 329 TTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (562)
Q Consensus 329 ~~~~~i-~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (562)
.....+ ...++.+.+ .|.++|++||++. +..+||++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 877775 778888877 4899999999964 456899888888888876543
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=3.4e-18 Score=179.60 Aligned_cols=128 Identities=26% Similarity=0.317 Sum_probs=90.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~ 258 (562)
.+.+|++++|+||||||||||+++|+|.+. +..+|.|...+.++....+...++++|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------ 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------ 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH------------
Confidence 678999999999999999999999998553 2235777655444432233334555554322211111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
.+ +||+||..+|++|++|||| |.++. +.+
T Consensus 186 ----------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~~----~~~ 214 (356)
T 3jvv_A 186 ----------------------------------------SE----ALRSALREDPDIILVGEMR---DLETI----RLA 214 (356)
T ss_dssp ----------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHHH----HHH
T ss_pred ----------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHHH----HHH
Confidence 11 9999999999999999999 66654 344
Q ss_pred HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCC
Q 008534 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G 372 (562)
.+++..|+|||+++|+.+. ...+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~--~~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA--AKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH--HHHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH--HHHHHHHhhhcCc
Confidence 4446679999999999764 3789999998654
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.69 E-value=5.4e-18 Score=164.25 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=110.8
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc---CcEEEEccCCCCCCC
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-~~~---~~igyV~Q~~~l~~~ 243 (562)
+.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... .+. ..+++.+|+.... .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 84 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-K 84 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-C
Confidence 4567899886 899999999999999999999999997543 234566554433221 110 0122222211000 0
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCC--EEEEeC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDE 321 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~--iLlLDE 321 (562)
+.+ . .... ..++ .. . .....|.++.++...+.+...+|+ ++++||
T Consensus 85 ~~~-----------~-~~~~------------~~~~-~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 85 LII-----------I-DALM------------KEKE-DQ----W----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp EEE-----------E-ECCC-----------------CT----T----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred EEE-----------E-eccc------------cccC-ce----e----eecCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 000 0 0000 0000 00 0 012459999999888888888999 999999
Q ss_pred CCCCC--CHHHHHHHHHHHHHHHH-CCcEEEEEecCCC-------hHHHhcCCEEEEEcCCe
Q 008534 322 PTSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 322 PTsgL--D~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~-------~~i~~~~D~i~vL~~G~ 373 (562)
||+++ |+....++++.|+++++ .|.|||+++|+.. ..+...||+|++|+..+
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99888 99999999999999865 5899999999972 23678899999998653
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=2.9e-19 Score=171.24 Aligned_cols=178 Identities=14% Similarity=0.087 Sum_probs=98.1
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~---~~~~G~I~i~G~~~~~ 225 (562)
.|+++|++|.|. ..+|++ |.+++|..++|+|+||||||||++.|+|.... .+..|.+.+.+.-.
T Consensus 3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-- 69 (210)
T 1pui_A 3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-- 69 (210)
T ss_dssp --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--
T ss_pred chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--
Confidence 478999999982 257888 88999999999999999999999999985410 23456554322100
Q ss_pred hccCcEEEEccCCCCC----CCCC---HHHHHHHHHhh-CC----------CCCccHHHHHHHHHHHHHHcCCCcccccc
Q 008534 226 SLKSKIGFVTQDDVLF----PHLT---VKETLTYAALL-RL----------PNTLTKQQKEKRAIDVINELGLERCQDTM 287 (562)
Q Consensus 226 ~~~~~igyV~Q~~~l~----~~lT---V~enl~~~~~~-~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 287 (562)
+...+-++ +.+-+. +.-. .+..+.+.... +. ....+. .+..+.+++...+++.. .
T Consensus 70 -~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~---~ 142 (210)
T 1pui_A 70 -VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVL---V 142 (210)
T ss_dssp -EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEE---E
T ss_pred -ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeE---E
Confidence 00011111 111110 0000 11122211110 00 001111 12234556666666532 1
Q ss_pred ccCcccCCCChhHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcE
Q 008534 288 IGGSFVRGVSGGERKR-VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (562)
Q Consensus 288 vg~~~~~~LSGGqrqR-v~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~T 347 (562)
+++ ....+|+||||| +.++++++.+|.++++|||||++|.....++++.|.++..++.|
T Consensus 143 v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 222 245699999999 89999999999999999999999999999999999998765544
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.3e-18 Score=186.41 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=97.3
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~ 227 (562)
..|+++||++.| +.+.+++|++|+| +|+||||||||||+++|+|.....+..|.+.+++.+ ...
T Consensus 10 ~~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQ 73 (418)
T ss_dssp -----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCE
T ss_pred CcEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--cee
Confidence 368899999876 3567999999998 999999999999999999965311212222222211 112
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH
Q 008534 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (562)
Q Consensus 228 ~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (562)
...++|++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++||
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVN 130 (418)
T ss_dssp EEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-C
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 356899999998888899999998864321 0000011212221 13567788899999
Q ss_pred HHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 308 NEIIINPS---LLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 308 raLl~~P~---iLlLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
|+++.+|+ +|++|||| .+||+... +.++.+.. +.+||+++|..+
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 99999999 99999999 69998863 34445543 788888888743
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.65 E-value=1.5e-16 Score=160.74 Aligned_cols=150 Identities=17% Similarity=0.222 Sum_probs=103.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH-HHHhhC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT-YAALLR 257 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~-~~~~~~ 257 (562)
-+++|++++|+||||||||||++.|++.+. .|.++ .|.+... ...+.|+..++.. ..+.+.+. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~~~g~--- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLHALGA--- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHHHHHT---
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHHHHHh---
Confidence 488999999999999999999999998432 45553 3443321 3457888766532 01222221 111
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---H
Q 008534 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---L 332 (562)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs--gLD~~~~---~ 332 (562)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .
T Consensus 93 ---~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 93 ---HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp ---TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred ---hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1111 224556777777654433 3568999998865 68899999999999999 9998544 7
Q ss_pred HHHHHHHHHHH-CCcEEEEEecCCC
Q 008534 333 RIVQMLQDIAE-AGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i~~~L~~l~~-~g~Tvii~tH~~~ 356 (562)
.+++.|+++++ .|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 88889998864 5999999999854
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.63 E-value=9.8e-18 Score=164.67 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=103.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCH----HH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KE 248 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~-~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV----~e 248 (562)
+.-.-..++|++++|+||||||||||+++|+|... | ...|.|.+.+.+.....++.++|+||++.+|+.+++ .|
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHH
Confidence 34445689999999999999999999999999653 3 367999998877654445678999998766654444 22
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
|+.+. |.. .+.| +++ ++.++..++++||| ||+
T Consensus 86 ~~~~~-----------------------------------~~~--yg~~---~~~---v~~~l~~G~illLD-----LD~ 117 (219)
T 1s96_A 86 HAEVF-----------------------------------GNY--YGTS---REA---IEQVLATGVDVFLD-----IDW 117 (219)
T ss_dssp EEEET-----------------------------------TEE--EEEE---HHH---HHHHHTTTCEEEEE-----CCH
T ss_pred HHHHH-----------------------------------hcc--CCCC---HHH---HHHHHhcCCeEEEE-----ECH
Confidence 22111 000 0111 222 34555668999999 999
Q ss_pred HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
.++..+.+.+. ++.||++++|++.. +. .|+ +.+| .++++++...+..
T Consensus 118 ~~~~~i~~~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 118 QGAQQIRQKMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHHHHHCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHHHHHcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHHH
Confidence 99999998876 58999999999653 33 243 7778 6788888766543
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.62 E-value=3e-20 Score=176.47 Aligned_cols=169 Identities=12% Similarity=0.062 Sum_probs=113.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~ 262 (562)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ..+++++|....++.+++++++.+.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~-----~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA-----QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNF----- 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH-----HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhc-----ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHH-----
Confidence 78999999999999999999997 2368999998765322 23567777665555568888887643211
Q ss_pred cHHHHHHHHHHHHHHcCCCccccccccC---cccCCC--ChhHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 008534 263 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 331 (562)
Q Consensus 263 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv~IAr------aLl~~P~iLlLDEPTsgLD~~~~ 331 (562)
+. -+.....+...+. ...+.+ |+|++|++.++. +|+.+|+...+|+ +||+...
T Consensus 70 ------------~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 70 ------------LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ------------HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ------------Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00 0100011110000 011234 899999988888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCcEEEEEecC-CChHHHhcCCEEEEEcCCeEEEecChHHH
Q 008534 332 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (562)
Q Consensus 332 ~~i~~~L~~l~~~g~Tvii~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~el 383 (562)
.. ++.+..+.+.+.++|.++|. +++ +.+.||+|+ ++|++++.|+++-+
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCch
Confidence 87 88888776567899999998 654 678899999 99999999987654
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.60 E-value=6.1e-16 Score=149.12 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=101.1
Q ss_pred ccceeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 008534 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~ 247 (562)
+.+.|+.+.. -+++|++++|+||||||||||++.|++ . . ++. +.|+..+..+ +..
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~-~~~---------------v~~i~~~~~~----~~~ 60 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S-GKK---------------VAYVDTEGGF----SPE 60 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H-CSE---------------EEEEESSCCC----CHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c-CCc---------------EEEEECCCCC----CHH
Confidence 3456777764 799999999999999999999999997 1 1 222 2233332211 111
Q ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH--HHHHHHHHHHhhC-CCEEEEeCCCC
Q 008534 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTS 324 (562)
Q Consensus 248 enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq--rqRv~IAraLl~~-P~iLlLDEPTs 324 (562)
.-....... .... +++++.+. +..+++++ +++++.+++++.+ |+++++||||+
T Consensus 61 ~~~~~~~~~----~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 61 RLVQMAETR----GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHTT----TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHhc----CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 111110000 0111 11222221 12355554 5688888999986 99999999999
Q ss_pred CCCHHH--------HHHHHHHHHHHHHC-CcEEEEEecCCCh------------HHHhcCCEEEEEcCC
Q 008534 325 GLDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 372 (562)
Q Consensus 325 gLD~~~--------~~~i~~~L~~l~~~-g~Tvii~tH~~~~------------~i~~~~D~i~vL~~G 372 (562)
.+|+.. ..++++.|++++++ |.|||+++|.... .+...||.|++|+..
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 117 HYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999743 24566668887654 8999999998542 456789999999764
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=3.8e-15 Score=141.12 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=72.0
Q ss_pred cCCCChhHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE
Q 008534 293 VRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~----~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v 368 (562)
+..||||||||++||++|+. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999865 56899999995 35789999986
Q ss_pred E--cCCeE-EEecChHHHH
Q 008534 369 L--GKGSL-LYFGKASEAM 384 (562)
Q Consensus 369 L--~~G~i-v~~G~~~el~ 384 (562)
+ .+|.. +...+.++..
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 5 46643 3334444433
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=7.2e-17 Score=172.70 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=111.7
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 008534 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.+ |++|||++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+||
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccch
Confidence 345 9999999999999 99999999999999999999532 22211 0000 11234579999999998888999
Q ss_pred HHHHHHHHhhCCCCCc-cH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CcccCCCChhHHHHHHHHHHHh
Q 008534 247 KETLTYAALLRLPNTL-TK---QQKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCIGNEII 311 (562)
Q Consensus 247 ~enl~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~t~----vg--~~~~~~LSGGqrqRv~IAraLl 311 (562)
.||+.|+.... ... .. ......+.+.+... ++.. ..|+. +. ....++|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99998753210 000 00 11233445555554 4331 11221 11 01113566665 79999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCcEEEEEecC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 354 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~-l~~~g~Tvii~tH~ 354 (562)
.+++|+++|||+..|.+.....+.+.+++ +...|.+|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999988999999986 77779999888764
No 118
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.55 E-value=2.9e-16 Score=148.59 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=94.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh--ccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~--~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|++. +.++|.+|+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4789999999999999999999999985 2369999999765322 1234678887654 357899998765321
Q ss_pred CCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 008534 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (562)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~ 336 (562)
....... ..++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 00000001111111110 0 1123469999999999999999999876 68887777777
Q ss_pred HHHHHHHCCcEEEEEe
Q 008534 337 MLQDIAEAGKTVVTTI 352 (562)
Q Consensus 337 ~L~~l~~~g~Tvii~t 352 (562)
.++.+...+..+|.++
T Consensus 143 ~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVS 158 (191)
T ss_dssp HTTCCGGGGGGEEECT
T ss_pred HHhccCcccccEEECC
Confidence 7765543233333333
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.54 E-value=7.9e-16 Score=162.59 Aligned_cols=132 Identities=21% Similarity=0.322 Sum_probs=98.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.+|++++ +++|++++|+||||||||||+++|+|.+. +..+|.|.+.|.++...++..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHhhhhccCceEEEeee------------
Confidence 4678876 89999999999999999999999998542 22269998877666434566788888841
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.+
T Consensus 191 ---------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 2221 0134 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 331 ALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 331 ~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
... .++. +..|.+|++++|..+ +...+||++.|.
T Consensus 224 ~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 224 VET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 443 3443 345899999999954 567888887764
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=1.8e-18 Score=181.97 Aligned_cols=162 Identities=13% Similarity=0.099 Sum_probs=102.5
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCCc----cEEEEC----CEeCC---hhccCcEEEEccCC
Q 008534 172 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 238 (562)
Q Consensus 172 iL~~vs~~i~~--Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~----G~I~i~----G~~~~---~~~~~~igyV~Q~~ 238 (562)
+.+.|+++|.+ |+.++|+||||||||||+++|+|.+. +.+ |+|.++ |.++. ..+ +.|++++|++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 46789999999 99999999999999999999999643 346 666653 22210 011 2234444433
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-hCCCEE
Q 008534 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 317 (562)
Q Consensus 239 ~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-~~P~iL 317 (562)
.++. .|+.|||.+. + .+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~~-------------------------~-~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFI-------------------------D-TDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEEE-------------------------S-SCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEEE-------------------------e-CCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 2221 2333332211 0 000111 11246677788888888875 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCcEEEEEecCCChHHHhcCCEEEEEc
Q 008534 318 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (562)
Q Consensus 318 lLDE---PT------sgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~~~~~i~~~~D~i~vL~ 370 (562)
|||| |+ .++|+..+..+.+.|+++.+ .|.+||+++|. + ...+++|++.+|+
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999998754 48899999975 3 3456666665554
No 121
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.52 E-value=1.1e-17 Score=165.80 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=101.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhC-
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR- 257 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~---G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~- 257 (562)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..++.+++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999 9543 45788888776543233344566788888888889999998753210
Q ss_pred -C---CCCccHHHHHHHHHHHHHHcCCC--ccc-------cccccCcccCCCChhHHHHHHHHHHH-hhCCCEEEEe---
Q 008534 258 -L---PNTLTKQQKEKRAIDVINELGLE--RCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 320 (562)
Q Consensus 258 -~---~~~~~~~~~~~~v~~~l~~lgL~--~~~-------~t~vg~~~~~~LSGGqrqRv~IAraL-l~~P~iLlLD--- 320 (562)
. -...+... ..+..+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 00111111 1122221111111 000 01112334567999 66 788 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 008534 321 -EPTSGLDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 321 -EPTsgLD~~~~~~i~~~L~~l~~~g 345 (562)
|||++||+.+...+.+.|+++.+.+
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887653
No 122
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.52 E-value=4.3e-16 Score=163.89 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=97.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC-C-hhccCcEEEEc-cCCCCCCCCCHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-S-KSLKSKIGFVT-QDDVLFPHLTVKET 249 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~-~-~~~~~~igyV~-Q~~~l~~~lTV~en 249 (562)
++++|+.|++|++++|+||||||||||+++|+|.+ + +.+|.|+++|..- . ...++.++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~--------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-P-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE--------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-C-TTSCEEEEESSSCCCCTTCSSEEEEECC--------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-C-CCceEEEECCccccCccccCCEEEEeecCcccc---------
Confidence 39999999999999999999999999999999854 3 4589999998531 1 12567789998 65432
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+++++..+|-.|+.+|..+|+.+++|||..
T Consensus 234 ---------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~----- 263 (361)
T 2gza_A 234 ---------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG----- 263 (361)
T ss_dssp --------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-----
T ss_pred ---------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-----
Confidence 011222345556666666899999999986
Q ss_pred HHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCe
Q 008534 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (562)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~ 373 (562)
.++.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 264 --~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 --GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp --THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 2455666666543457899999965 467789999888764
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.50 E-value=7.5e-18 Score=174.24 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CCCccEEEECCEeCCh-------------------hccCcEEEE---c
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 235 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~------~~~~G~I~i~G~~~~~-------------------~~~~~igyV---~ 235 (562)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999985310 2457999999988642 123447777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~ 312 (562)
|++.++++.+|.||+.++.....-..+ .......++..++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 777666677888877653110000000 0000000111122233443333332 2599999999998888889
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99887 888 67888888875 58999999998643
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=1.7e-15 Score=164.31 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=104.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h--ccCcEEEEccCCCCCC
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 242 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~--~~~~igyV~Q~~~l~~ 242 (562)
-+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+..+ . .++.|+||+|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 478999999999999999999999999999999653 357999998776532 1 2567999999988888
Q ss_pred CCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh-hCC-CEEEEe
Q 008534 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 320 (562)
Q Consensus 243 ~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl-~~P-~iLlLD 320 (562)
.++|++|+.++...... . -+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~~D----------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCC----------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 88999999987432110 0 0112222221111 11122357888888774 446 456555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
+||+|.|.. +.++.+.+ -+.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 588886554 23344433 48899999993
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=1.5e-13 Score=144.78 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=67.8
Q ss_pred cccCCCChhHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcC
Q 008534 291 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (562)
Q Consensus 291 ~~~~~LSGGqrqRv------~IAraLl~~-P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~ 363 (562)
..+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||++||++. +...|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhC
Confidence 34568999999988 567899999 99999999999999999999999999874 3569999999974 56889
Q ss_pred CEEEEEc
Q 008534 364 DKLILLG 370 (562)
Q Consensus 364 D~i~vL~ 370 (562)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.47 E-value=6.6e-14 Score=136.85 Aligned_cols=158 Identities=20% Similarity=0.321 Sum_probs=88.0
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----CccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~-----~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lT 245 (562)
.|+.+- .-+++|++++|+||||||||||++.|++....++ ..|.+++++.+. + .
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~ 71 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----R 71 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----C
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----C
Confidence 444443 5699999999999999999999999998422122 245666655431 0 0
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH-HHHHHHHh--hCCCEEEEeCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEP 322 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-v~IAraLl--~~P~iLlLDEP 322 (562)
..+-........ ...+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 110000000000 0000 11111100 12244444332 23333444 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHHC-CcEEEEEecCCChH------------------HHhcCCEEEEEcC
Q 008534 323 TSGLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGK 371 (562)
Q Consensus 323 TsgLD~~-------~-----~~~i~~~L~~l~~~-g~Tvii~tH~~~~~------------------i~~~~D~i~vL~~ 371 (562)
++.+|+. . ...++..|++++++ |.|||+++|..... +...||.+++|+.
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34566667776654 99999999964321 2227899999986
Q ss_pred C
Q 008534 372 G 372 (562)
Q Consensus 372 G 372 (562)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.47 E-value=1.9e-16 Score=149.72 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCC--CccEEEECCEeCC-------hhcc-CcEE----EEccCCCCCCCCCHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKET 249 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~~~--~~G~I~i~G~~~~-------~~~~-~~ig----yV~Q~~~l~~~lTV~en 249 (562)
++++|+|+||||||||+++|+|.+. +. ..|.|.+||.++. ..+| +.+| +++|++.+|- ++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----RR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE----EE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE----ec-
Confidence 5899999999999999999998543 22 2699999998742 2344 3567 8899877661 10
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHH-cCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEE-------EEeC
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDE 321 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iL-------lLDE 321 (562)
. ..+ ....+.++++. + + .+|+.++. +||||||||++||||++.+|++. +-|.
T Consensus 77 ---------~---~~~-~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~ 136 (171)
T 2f1r_A 77 ---------V---SEE-EGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDE 136 (171)
T ss_dssp ---------C---CHH-HHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSS
T ss_pred ---------C---Chh-hhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecC
Confidence 0 011 12245666665 4 3 57888874 59999999999999999999873 2244
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHCC
Q 008534 322 PTSG---LDSTTALRIVQMLQDIAEAG 345 (562)
Q Consensus 322 PTsg---LD~~~~~~i~~~L~~l~~~g 345 (562)
|..+ +|......+.+.+.+...+|
T Consensus 137 ~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 137 RVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcccCcccCcccHHHHHHHHHHHHhcc
Confidence 4322 33444566777776655554
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.46 E-value=3.5e-14 Score=148.90 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=86.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEEC-CEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~-G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
-++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |.+.....+..+++++|+..+++..+|+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-
Confidence 46677664 48999999999999999999999995421 447999987 765433445679999999999988899884
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraL 310 (562)
+ + ..++.++....+.++++.+++.+..+.. ..++| ||+||++||+++
T Consensus 282 --~----l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G----L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C----C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred --h----h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1244555566778888889987766654 46899 999999999875
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=9.7e-15 Score=151.71 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=97.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hcc--CcEEEEccCCCCCCCCCHHHH
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLK--SKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~--~~igyV~Q~~~l~~~lTV~en 249 (562)
.++|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.+ .++ ..+.|++|+..++|.++|+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999653 458999999998742 122 346699999999999999999
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 008534 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (562)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~ 329 (562)
+.++...... . -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d-~-----------vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGID-V-----------VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTCS-E-----------EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccch-h-----------hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 9876421100 0 01112222211111 112233 48899998888889985554
Q ss_pred HHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 330 TALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 330 ~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
.++++.++.+.+ .+.|+|++||.
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 355556666653 48999999995
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.43 E-value=5.3e-15 Score=138.02 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=66.3
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc-CcEEEEccCCCCCCCCCHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTVK 247 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~-~~igyV~Q~~~l~~~lTV~ 247 (562)
.+.++++|||+|++|++++|+||||||||||+|+|+|.+ | .+|+|.++|.++..... .+ |++|++.+| .+||.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCcH
Confidence 457999999999999999999999999999999999965 3 47999999988743221 22 899998888 89999
Q ss_pred HHHHH
Q 008534 248 ETLTY 252 (562)
Q Consensus 248 enl~~ 252 (562)
||+.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.41 E-value=1e-14 Score=149.12 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=87.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh----h
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 256 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~----~ 256 (562)
+++.+++|+||+|||||||.+.|++.+. + .| . . ++.+.+|+||+.+++. ++++|+.++.. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 4688999999999999999999998542 1 22 0 1 3456677999999975 99999988631 1
Q ss_pred C---CCCCccHHHHHHHHHHHHHHcCCCcccccc-----ccCcccCCCChhHHHHHHHH--HHHhhCCCEEEEeCCCCCC
Q 008534 257 R---LPNTLTKQQKEKRAIDVINELGLERCQDTM-----IGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSGL 326 (562)
Q Consensus 257 ~---~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~-----vg~~~~~~LSGGqrqRv~IA--raLl~~P~iLlLDEPTsgL 326 (562)
. .|... ..+.+.+.++.+.. ..+|. .-..+...+||||+||+++| +++ +|+|||+||||+++
T Consensus 94 ~~~g~p~a~----d~~~l~~~l~~l~~--g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 94 QGRGLPGTH----DMKLLQEVLNTIFN--NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp SSSCSTTSB----CHHHHHHHHHHHTC--------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhccCcchh----HHHHHHHHHHHhhc--cCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 1 12222 23345566666632 22211 01234468999999999997 555 99999999999999
Q ss_pred CHHH
Q 008534 327 DSTT 330 (562)
Q Consensus 327 D~~~ 330 (562)
|+..
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9863
No 132
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.39 E-value=5.9e-13 Score=142.82 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=67.9
Q ss_pred CCCChhHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEE
Q 008534 294 RGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl----~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL 369 (562)
..||||||||++||++|+ .+|++|||||||++||+..+..+.+.|+++.+.+.++|++||++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999865578999999994 356789999998
Q ss_pred c
Q 008534 370 G 370 (562)
Q Consensus 370 ~ 370 (562)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 133
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.37 E-value=1.3e-15 Score=158.95 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=114.0
Q ss_pred EEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 008534 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (562)
Q Consensus 150 l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~---- 225 (562)
|+++|+++.| ..+.+|+++|+++++|++++|+||||||||||+++|+|.+. +.+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSC
T ss_pred HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccc
Confidence 5666666655 23579999999999999999999999999999999998543 458999999987632
Q ss_pred ----hccCcEEEEccCCCCCCCC------------CHHHHHHHHHhhCCC------CCc--------------------c
Q 008534 226 ----SLKSKIGFVTQDDVLFPHL------------TVKETLTYAALLRLP------NTL--------------------T 263 (562)
Q Consensus 226 ----~~~~~igyV~Q~~~l~~~l------------TV~enl~~~~~~~~~------~~~--------------------~ 263 (562)
..+++++|++|++.+|+.. +++|.+........+ .++ .
T Consensus 100 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG 179 (337)
T ss_dssp CCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred cchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC
Confidence 2356799999999887532 133333111000000 000 0
Q ss_pred -HHHHH---HHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHH
Q 008534 264 -KQQKE---KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTALR 333 (562)
Q Consensus 264 -~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~------~P~iLlLDEPTsgLD~~~~~~ 333 (562)
....+ ..+.+....+.+ +..|. .....+|+|++|++..+++++. +|++++ ||++|.....+
T Consensus 180 ~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~ 250 (337)
T 2qm8_A 180 AGDELQGIKKGIFELADMIAV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDS 250 (337)
T ss_dssp C------CCTTHHHHCSEEEE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHH
T ss_pred CcccHHHHHHHHhccccEEEE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHH
Confidence 00000 001111111111 11111 0123579999999999999987 688887 99999999999
Q ss_pred HHHHHHHHHH
Q 008534 334 IVQMLQDIAE 343 (562)
Q Consensus 334 i~~~L~~l~~ 343 (562)
+++.|.++..
T Consensus 251 L~~~I~~~~~ 260 (337)
T 2qm8_A 251 LWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.36 E-value=2.5e-13 Score=127.71 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.1
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChH
Q 008534 310 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (562)
Q Consensus 310 Ll~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~ 358 (562)
.+.+|++||||||++ ++|+..+..+.+.+....++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999996 9999999999999998877899999999997653
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.35 E-value=5.3e-13 Score=123.00 Aligned_cols=98 Identities=14% Similarity=0.313 Sum_probs=71.5
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.+|+++ +|+.++|+||||+|||||+++|++.+. + .| ..+.|+...+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~--~-~g--------------~~~~~~~~~~~~~-~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL--E-AG--------------KNAAYIDAASMPL-T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH--T-TT--------------CCEEEEETTTSCC-C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH--h-cC--------------CcEEEEcHHHhhH-H-------
Confidence 467777 899999999999999999999998543 2 35 0133443322110 0
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHCCcE-EEEEecCCCh
Q 008534 331 ALRIVQMLQDIAEAGKT-VVTTIHQPSS 357 (562)
Q Consensus 331 ~~~i~~~L~~l~~~g~T-vii~tH~~~~ 357 (562)
+..+.+.+..+.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88899999998877888 8888886543
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.33 E-value=7.1e-16 Score=165.20 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=93.7
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEc-----
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT----- 235 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~~~~igyV~----- 235 (562)
...+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|.|.+.|.++.. ..++.+++++
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 34578888 5 38999999999999999999999999653 347999999887631 1234456655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH
Q 008534 236 ----QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (562)
Q Consensus 236 ----Q~~~l--~~~----lTV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (562)
|+|.+ ++. .|+.+++.++...... ..+...... .+.+.+..+++.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88765 333 5899999876421100 000000011 122346677886542 235799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 008534 305 CIGNEIIINPSLLFL 319 (562)
Q Consensus 305 ~IAraLl~~P~iLlL 319 (562)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.33 E-value=3.1e-14 Score=152.31 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=97.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.+ .+...+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--c------cccCcccc-eecceeeEEEecCc--ceEEEEecccc
Confidence 48999999999999999999999999999999842 1 23333332 12234566665430 01111111110
Q ss_pred HHhhCCCCCccHHHH--HHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 008534 253 AALLRLPNTLTKQQK--EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~ 330 (562)
.........+..... .+++..++..+++. ...+..||+|++|++.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 000000001111100 01111222223332 123457999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCcEEEEEecCCChHHHhcCC
Q 008534 331 ALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 331 ~~~i~~~L~~l~-~~g~Tvii~tH~~~~~i~~~~D 364 (562)
+ ..++.+++.. +.+.++|++|..-...+.++++
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 6 5555555543 4477777665432333444433
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=9.9e-13 Score=136.15 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=94.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCcc
Q 008534 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (562)
Q Consensus 186 ~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~ 263 (562)
+.|.||||+|||||+++|++.+.. +..|.|.++|.+... ..+..+++++|.+.+.-..+ + .+ ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccc
Confidence 899999999999999999984443 347999999977542 22456889998775421111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.. .+.+.++.+......+.. . .||| +..+|+|+|+|||++ ||+.++..+++.|.+..
T Consensus 106 ~~----~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 RI----VIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp HH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred hH----HHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 11 122333333111111111 1 3566 788999999999999 99999999999998764
Q ss_pred CCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecC--hHHHHHHHHh----cCCCCCCCCChHHHHHHhhcCC
Q 008534 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK--ASEAMAYFSS----IGCSPQIAMNPAEFLLDLANGN 411 (562)
Q Consensus 344 ~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~--~~el~~~f~~----~g~~~~~~~npad~~~~~~~~~ 411 (562)
.+.++|+++|++......+.+|+ ..+...+ .+++.++... .|...+. ....+++.....++
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGN 229 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCC
Confidence 37899999999764322233333 3444443 3455555442 3443220 12345565555554
No 139
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.30 E-value=1.8e-14 Score=139.18 Aligned_cols=165 Identities=19% Similarity=0.133 Sum_probs=95.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~ 259 (562)
.++|++++|+||||||||||+++|+|.+. +. | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~--~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS--AQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH--HT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh--hc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57999999999999999999999999653 21 3 236677776655532 333332110000111
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008534 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (562)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-raLl~~P~iLlLDEPTsgLD~~~~~~i~~~L 338 (562)
..... ..+.+++..+...+..+..+.+.. ..+|+||+||+++| ++++.++.++++|||.- ..+
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l 144 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDL 144 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGG
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHH
Confidence 11111 122333433322222233333322 35899999999998 88888888888888731 111
Q ss_pred HHHHHCCcEEEEEecCCChHHHhcCCEEEEEcCCeEEEecChHHHHHHHH
Q 008534 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (562)
Q Consensus 339 ~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~el~~~f~ 388 (562)
. ..--.+|++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 145 ~---~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 145 T---AIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp G---GTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred H---HhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1 112367778777655455666662 34454 6677766554
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.30 E-value=1.6e-13 Score=140.90 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=81.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChh---cc-CcEEEEccCCCCC-----CCCCHH
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTVK 247 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~---~~-~~igyV~Q~~~l~-----~~lTV~ 247 (562)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++++.. .+ +.+|||+|+|.+. +++|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4579999999999999999999999 653 45799999 99877532 22 3689999998553 67899
Q ss_pred HHH--HHHH----hhCCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcccCCCChhHHHHHHHHHH
Q 008534 248 ETL--TYAA----LLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 309 (562)
Q Consensus 248 enl--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IAra 309 (562)
||+ .|+. .++.....+..+...++.++++.++|.+ .++. +++.|||.++|++.|||.
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 888 4541 0111110112223356888999999985 4554 356899999999999873
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.30 E-value=7.8e-12 Score=133.16 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=50.1
Q ss_pred HHHHHHHHHh--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CcEEEEEecCCC----------
Q 008534 302 KRVCIGNEII--INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS---------- 356 (562)
Q Consensus 302 qRv~IAraLl--~~P~iLlLDEPTsgLD~~~~------------~~i~~~L~~l~~~-g~Tvii~tH~~~---------- 356 (562)
+.+..+++++ .+|+++++||||+.+|+... .++++.|++++++ |.|||+++|...
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 3333344443 46999999999999997543 6788888888764 999999999821
Q ss_pred --------hHHHhcCCEEEEEcCCe
Q 008534 357 --------SRLFHKFDKLILLGKGS 373 (562)
Q Consensus 357 --------~~i~~~~D~i~vL~~G~ 373 (562)
..+...+|.+++|++++
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------CHHHHHCSEEEEEEECS
T ss_pred CCccCCchhHHHHhcceEEEEEecC
Confidence 22456789999998764
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.27 E-value=5.3e-16 Score=149.36 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=87.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCCccEEEECCEeCC----hhccCcEEEEccCCCCCCCCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLT 245 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~-----------~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lT 245 (562)
++|++++|+||||||||||+++|+|.+.. ++..|+ ++|.++. ..+++.+ .|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 58999999999999999999999985320 123455 3555432 1233322 45555542 35
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHH-HHhhCCCEEEEeCCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN-EIIINPSLLFLDEPTS 324 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAr-aLl~~P~iLlLDEPTs 324 (562)
+.+|+ |+ .+.+ .+.++++. +.....+..+. ....+ .++ ++ +++ +++.+|++++|||+|+
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~-~~~~~~~~~~~--g~~~~--~~~-~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAM-NRICVLDVDLQ--GVRSI--KKT-DL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHT-TCEEEEECCHH--HHHHH--TTS-SC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHc-CCcEEEECCHH--HHHHH--Hhc-CC-CcEEEEEeCCCHHHHHHHHH
Confidence 55554 32 1222 23333332 10000010000 00000 000 22 455 6788888999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEEEcC
Q 008534 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (562)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~vL~~ 371 (562)
++|..+...|.+.|.++.+. +.+.|. . ..||+|+++++
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred hcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 99999999999999887653 234562 1 56999988864
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.27 E-value=5.2e-15 Score=162.34 Aligned_cols=176 Identities=16% Similarity=0.115 Sum_probs=107.1
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~-~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
..+++++++.+++|+.++|+||||||||||+++|+|.+. +..|.|+++|.+ +.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 458899999999999999999999999999999999653 558999998865 32122345667766544222345555
Q ss_pred HHHHHHhhCCCC-----CccHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCcccCCC
Q 008534 249 TLTYAALLRLPN-----TLTKQQKEK------------------RAIDVINELGL-----ER----CQDTMIGGSFVRGV 296 (562)
Q Consensus 249 nl~~~~~~~~~~-----~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~t~vg~~~~~~L 296 (562)
++....+.+ |. .+...+... .+.++++++.. +. ..+..+ .....+
T Consensus 325 ~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 544332211 10 011000000 12233333322 11 011000 112357
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEE--EecCCChHHHhcC
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 363 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii--~tH~~~~~i~~~~ 363 (562)
||||+||++++. + | |+|||+.....+++.|.++...++|+++ +||++.. +...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHc
Confidence 999999987651 2 7 9999998777777777766556788875 8888643 44444
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.15 E-value=1.9e-14 Score=152.83 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=117.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----------CCCCccEEEECCEeCCh---h--ccCc---EEEEccCCCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK---S--LKSK---IGFVTQDDVL 240 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~----------~~~~~G~I~i~G~~~~~---~--~~~~---igyV~Q~~~l 240 (562)
.+++|..++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. . .++. ..++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999311 12457999998854321 0 1122 2477788888
Q ss_pred CCCCCHHHHH--HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC--CE
Q 008534 241 FPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SL 316 (562)
Q Consensus 241 ~~~lTV~enl--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P--~i 316 (562)
++..+..|++ .|...++. ++.++..++..+ +..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8777776655 33322221 001111111111 12233467653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCcEEEEEecCCChHHHhcCCEEE-EEcCC-eEEEecChH
Q 008534 317 LFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKAS 381 (562)
Q Consensus 317 LlLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvii~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~~ 381 (562)
+++|||+.++|+......++.++.+ .+.|.|++ +|... .+..+||++. +|++| ++++.|+..
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66677764 99864 5778999999 99999 998887643
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.12 E-value=1.4e-14 Score=146.65 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=98.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCC-CCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~-~l~~~ 243 (562)
...+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|.. ..+|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999 99999999999999999999542 2789999987642 2245678888875 45666
Q ss_pred CCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
+++.|++.+....+ ... .. . .+....++ ....|||||+||+.|++|+..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r-------~~~--~~----~--~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR-------SDR--ET----G--ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc-------CCC--cc----h--HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777776432111 000 00 0 01122222 33579999999999999999999985 9886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 008534 324 S------------GLDSTTALRIVQML 338 (562)
Q Consensus 324 s------------gLD~~~~~~i~~~L 338 (562)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666666666543
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.11 E-value=2.8e-12 Score=131.44 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=68.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCChh---c-cCcEEEEccCCC------------
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV------------ 239 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~~---~-~~~igyV~Q~~~------------ 239 (562)
++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|++++.. . .+.+|||+|+|.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 456799999999999999999999999543 45899999 89887531 1 236899999974
Q ss_pred ----CCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcccCCCCh
Q 008534 240 ----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (562)
Q Consensus 240 ----l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (562)
+||++|+ ||+.|+. +.. ..+...++.++++.++|+ +.++. +++.||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 6889999 9998853 111 112234688899999995 44443 3455664
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.09 E-value=3.7e-13 Score=139.66 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=97.0
Q ss_pred ccceeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hc-cCcEEEEc
Q 008534 169 EKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SL-KSKIGFVT 235 (562)
Q Consensus 169 ~~~iL~~vs~~i~~G-------e~~alvGpsGsGKSTLl~~L~G~l~~--~~~~G~I~i~G~~~~~---~~-~~~igyV~ 235 (562)
...+++++++.+++| +.++|+||||+|||||+++|+|.+.. .+.+|.+..++.++.. .+ +..|.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 346899999999887 89999999999999999999986421 1235666555544422 12 45699999
Q ss_pred cCCCCCCCCCHHHHHHHHHhhCCCCC-ccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCC
Q 008534 236 QDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (562)
Q Consensus 236 Q~~~l~~~lTV~enl~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P 314 (562)
|.+.+++ ++.|++..........- .........+...+..++|.. ..+. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9888775 78888854432211000 001111223334444444433 3332 357999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 315 ~iLlLDEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999998865
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.06 E-value=1.2e-11 Score=120.90 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=48.4
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCcEEEEEecCCChH-------HHhcCCEEEEEcC
Q 008534 304 VCIGNEII--INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 371 (562)
Q Consensus 304 v~IAraLl--~~P~iLlLDEPTsgL--D~~~~~~i~~~L~~l~-~~g~Tvii~tH~~~~~-------i~~~~D~i~vL~~ 371 (562)
+..++.++ .+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344444 589999999999988 6655566666666664 5589999999986531 4577899999964
No 149
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=1.5e-11 Score=126.59 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=67.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE---CCEeCCh--hc-cCcEEEEccCCCCCC----CCCHH
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSK--SL-KSKIGFVTQDDVLFP----HLTVK 247 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i---~G~~~~~--~~-~~~igyV~Q~~~l~~----~lTV~ 247 (562)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+.++. .+ +..+|||+|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999543 45799998 8877643 22 222799999987655 6899
Q ss_pred HHHH--HHH------hhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHH
Q 008534 248 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (562)
Q Consensus 248 enl~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (562)
|||. |.. .|+........+...++.++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 111111111112234688899999997633221 13577777763
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.01 E-value=1.6e-10 Score=118.76 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=78.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 008534 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (562)
Q Consensus 176 vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~ 255 (562)
+++..++|++++|+|||||||||++..|++.+. +.+|+|.+.+.+..+. ...+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~eq------ 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIEQ------ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHHH------
Confidence 455567899999999999999999999998653 3467777766553210 01111
Q ss_pred hCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv---~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
+..+.+.++++. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 222344455542 135789999999 99999999999999999974 33445
Q ss_pred HHHHHHHHHH
Q 008534 333 RIVQMLQDIA 342 (562)
Q Consensus 333 ~i~~~L~~l~ 342 (562)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=1.7e-11 Score=125.85 Aligned_cols=97 Identities=10% Similarity=0.111 Sum_probs=78.7
Q ss_pred eEEEEeEEEEEeecccCCccccceeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLME 209 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~alvGpsGsGKSTLl~~L~G~l~~ 209 (562)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|.+..
T Consensus 37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57888998766 25899999988 99999999999999999999999995431
Q ss_pred CCCccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhh
Q 008534 210 PTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (562)
Q Consensus 210 ~~~~G~I~i---~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~ 256 (562)
.+.+|+|.+ ||.......++.++++ |+..+++.+++.+|+.+...+
T Consensus 107 ~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 135799999 9887654445668888 877777889999999886544
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.94 E-value=1.3e-09 Score=114.06 Aligned_cols=155 Identities=21% Similarity=0.302 Sum_probs=91.0
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+-|+.+- +-+++|+++.|.||||||||||+..++.... ..+| .+.|+.-+..+-+ .
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~---------------~vlyi~~E~~~~~---~-- 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGG---------------IAAFIDAEHALDP---E-- 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CEEEEESSCCCCH---H--
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCC---------------eEEEEECCCCcCH---H--
Confidence 3455443 3689999999999999999999888875322 1111 2445544421110 0
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~--P~iLlLDEPTsgL 326 (562)
++ +.+|+... +-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 ---~a----------------------~~lG~~~~-~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 105 ---YA----------------------KKLGVDTD-SLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp ---HH----------------------HHTTCCGG-GCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred ---HH----------------------HHcCCCHH-HeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 11 11222100 00010 11222 3446678888765 9999999999998
Q ss_pred ----------CH---HHHHHHHHHHHHH----HHCCcEEEEEecCCCh---------------HHHhcCCEEEEEcCCeE
Q 008534 327 ----------DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 ----------D~---~~~~~i~~~L~~l----~~~g~Tvii~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (562)
|+ ..++.+.+.++++ .+.|.|||+++|.... .+..+||.++.++.+++
T Consensus 153 ~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 153 PRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp CHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred chhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 33 2223445555555 3458999999996431 24567999999988776
Q ss_pred EEecC
Q 008534 375 LYFGK 379 (562)
Q Consensus 375 v~~G~ 379 (562)
+..|+
T Consensus 233 ~k~g~ 237 (349)
T 2zr9_A 233 LKDGT 237 (349)
T ss_dssp ECSSS
T ss_pred eecCc
Confidence 65554
No 153
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.94 E-value=3.7e-11 Score=131.38 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=98.6
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-CCCCCCCccEEEECCEeCCh-hccCcEEEEccCCCCCCCC--CHHHHH
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG-RLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETL 250 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G-~l~~~~~~G~I~i~G~~~~~-~~~~~igyV~Q~~~l~~~l--TV~enl 250 (562)
.+++.+.++..++|.|++||||||+++.|.. .++. ...|++.+.+.|... .+ +....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-~~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-AQPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-CCTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-CCCceEEEEEECCchhhh--------hhhccCCcccceeecCH
Confidence 4677888999999999999999999998864 2222 224667666665432 11 111111221 222222
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHH----------HHHHHHhhCCC-EEEE
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLFL 319 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv----------~IAraLl~~P~-iLlL 319 (562)
..+...- .....+.++| .+++...|+.+..+.. ......+||||+||. .+++++...|. ++++
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 2211100 0112344444 3678888876543210 001135789998763 35666777898 7899
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH----CCcEEEEEecCCC
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAE----AGKTVVTTIHQPS 356 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~----~g~Tvii~tH~~~ 356 (562)
||++.-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9999988843 3455666665543 2779999999987
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.94 E-value=2.7e-09 Score=115.20 Aligned_cols=181 Identities=12% Similarity=0.127 Sum_probs=109.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EEEECCEeCCh-hccCc-EEEEccCCCCCCCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLT 245 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I~i~G~~~~~-~~~~~-igyV~Q~~~l~~~lT 245 (562)
+.+.|+++.+-+++|+++.|.|++|+|||||+..|++... ...| .|.+-+...+. .+..+ ++... ...
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~ 259 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NIN 259 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCC
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCC
Confidence 3457899988899999999999999999999999987432 1123 23332222211 11100 00000 000
Q ss_pred HHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCC
Q 008534 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPT 323 (562)
Q Consensus 246 V~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPT 323 (562)
. +.+. . ..+...+ ..++.+.+..++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++
T Consensus 260 ~-~~l~------~-g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~ 323 (454)
T 2r6a_A 260 A-QNLR------T-GKLTPED-WGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQ 323 (454)
T ss_dssp H-HHHH------T-SCCCHHH-HHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGG
T ss_pred H-HHHh------c-CCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHH
Confidence 0 0010 0 0122222 23445555555433221 111 2468999887 5677776 689999999999
Q ss_pred CCCCH--------HHHHHHHHHHHHHHHC-CcEEEEEec---------C--CC-------hHHHhcCCEEEEEcCCeE
Q 008534 324 SGLDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 324 sgLD~--------~~~~~i~~~L~~l~~~-g~Tvii~tH---------~--~~-------~~i~~~~D~i~vL~~G~i 374 (562)
...++ ....++.+.|+.++++ |.+||+++| + |. ..+...||.|++|+.++.
T Consensus 324 ~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 324 LIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 97742 3346777888888754 899999999 2 32 136678999999987764
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.93 E-value=2.1e-09 Score=109.88 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=80.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~ 253 (562)
++++++ +|++++|+|+||+||||++..|++.+. ..+|+|.+.+.+...... + +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~-----------------~-~ql~-- 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA-----------------R-EQLR-- 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH-----------------H-HHHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH-----------------H-HHHH--
Confidence 678888 999999999999999999999998653 346888887765432100 0 0000
Q ss_pred HhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 008534 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 332 (562)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEP-TsgLD~~~~~ 332 (562)
.+.+..+++-... + ....-.+.+|.+|++++..+++++|+||| +.++|.....
T Consensus 147 -------------------~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 147 -------------------LLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp -------------------HHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred -------------------HhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 1122334432110 0 01233455788999998899999999999 9999988777
Q ss_pred HHHHHHHHH
Q 008534 333 RIVQMLQDI 341 (562)
Q Consensus 333 ~i~~~L~~l 341 (562)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 777766554
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.88 E-value=8.1e-11 Score=112.07 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=48.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
|+++++|++++|+||||||||||+++|+|.+ | .+.+++..+.. ..+..++|++|++.+|+.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5778899999999999999999999999953 2 36666655432 2345689999988777665555544
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.88 E-value=1.8e-09 Score=110.51 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=87.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~ 260 (562)
++|++++|+|||||||||++..|++.+. +.+| +++.++.+|+. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4789999999999999999999998542 2245 35778887763 346666665422
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
+.+|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++ .+
T Consensus 158 ---------------~~~gl~~~~----------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el-~~ 206 (296)
T 2px0_A 158 ---------------ELLQAPLEV----------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDEL-KE 206 (296)
T ss_dssp ---------------TTTTCCCCB----------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHH-HH
T ss_pred ---------------HhcCCCeEe----------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHH-HH
Confidence 112332110 112 2334555554 5999999999 999998765444443 33
Q ss_pred HHH----CCcEEEE-EecCCChHHHhcCCEEEEEcCCeEEEe
Q 008534 341 IAE----AGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 377 (562)
Q Consensus 341 l~~----~g~Tvii-~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (562)
+.. .+.++|+ ++|.. .++.+.++++..+..+.++..
T Consensus 207 ~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 322 2334444 37874 346677777766777777764
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.88 E-value=3.3e-10 Score=107.21 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=76.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----CC-----CccEEEECCEeCCh------hccCcEEEEccCCCC-CCCCCHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLME----PT-----VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 248 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~----~~-----~~G~I~i~G~~~~~------~~~~~igyV~Q~~~l-~~~lTV~e 248 (562)
.++|+|+||||||||++.++|.... ++ ..|.|.++|.++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999986432 11 36899999976421 011112222221000 00011111
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
+.... +.+.......+ +.........--.+++. .+|..-..+.+.+|++|+.+|+++++| ||++|.
T Consensus 111 ~~~~~---------s~~~~~~~~~~-~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKHL---------TYENVERWLKE-LRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCHH---------HHHTHHHHHHH-HHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCHH---------HHHHHHHHHHH-HHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 10000 00000000111 11111011101112221 123333334578999999999999999 999999
Q ss_pred HHHHHHHHHHHHH
Q 008534 329 TTALRIVQMLQDI 341 (562)
Q Consensus 329 ~~~~~i~~~L~~l 341 (562)
....++++.|.+.
T Consensus 177 ~~v~~l~~~l~~~ 189 (191)
T 1oix_A 177 TNVEAAFQTILTE 189 (191)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999888653
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.87 E-value=1.3e-12 Score=131.70 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=84.1
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~-l~~~ 243 (562)
...+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.+++.++.. ...+.+++++|... .++.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 99999999999999999998542 6889998876432 22345778888753 5667
Q ss_pred CCHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 244 lTV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
+++.|++......+... .....+....+..++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888885332111000 000111122222221 35899999999999999999876
No 160
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.87 E-value=6.2e-10 Score=120.89 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=46.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
..+|+||||+|++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3589999999999 9999999999999999999999543 55899999998764
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.85 E-value=1.8e-12 Score=128.49 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=82.8
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~-l~~~l 244 (562)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...+.+++++|... ..+.+
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 46899999999999 99999999999999999998542 6889998866422 22345677888743 55667
Q ss_pred CHHHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCE
Q 008534 245 TVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (562)
Q Consensus 245 TV~enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i 316 (562)
++.|++......+... .....+....+..++ ..|||||+||+.|++++..+|++
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 7888884322111000 000111122222222 35899999999999999999986
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=5.9e-11 Score=132.76 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=99.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCC----------
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD---------- 238 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~---------- 238 (562)
...+++++++.+.+|+.++|+||||+|||||+++|++.+. +...|.+.+++.+... ....++|+++..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 4568999999999999999999999999999999999654 3434889888876543 345688888753
Q ss_pred ------------CCCCCCCHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHH
Q 008534 239 ------------VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (562)
Q Consensus 239 ------------~l~~~lTV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (562)
..+..+++.+|+........+..+-.. ......++ +|.-+... ....++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L---~G~~~~~~-----~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGAL---LGDVRHDP-----FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHH---HCEECCCC-----C----CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhc---CceEEech-----hhcCCccccccccccC
Confidence 111222222222110000000000000 00001111 12110000 0114699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008534 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (562)
Q Consensus 307 AraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~ 340 (562)
++....++.+|||||... |++.....+++.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899988888888764
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.68 E-value=6.1e-10 Score=109.74 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=48.1
Q ss_pred eeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 008534 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (562)
Q Consensus 148 ~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~-- 225 (562)
..|+++|+...+ .. ++++.+ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~---------~~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~ 69 (227)
T 1qhl_A 8 RSLTLINWNGFF---------AR------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGAT 69 (227)
T ss_dssp EEEEEEEETTEE---------EE------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------
T ss_pred eEEEEEeeeccc---------CC------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCC
Confidence 357888876543 11 456666 8999999999999999999999654 458999999987621
Q ss_pred ----------hccCcEEEEccC
Q 008534 226 ----------SLKSKIGFVTQD 237 (562)
Q Consensus 226 ----------~~~~~igyV~Q~ 237 (562)
..+..++||+|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 70 SGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -------CGGGBCSSEEEEEEE
T ss_pred ccccccchhhHhhcCcEEEEEe
Confidence 135678999984
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.67 E-value=4.1e-10 Score=110.10 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 207 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~-G~l 207 (562)
.+..+++||++++|++++|+||||||||||+++|+ |.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
No 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.62 E-value=7.5e-09 Score=98.13 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 008534 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342 (562)
Q Consensus 303 Rv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~ 342 (562)
....|++|+.+|.++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356799999999999999 99999999999998887654
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.61 E-value=2.4e-08 Score=104.65 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=49.9
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccE-EEECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS-ITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~-I~i~G~~~~-~~~~~~igyV~Q~~~l~~~lTV 246 (562)
+.|+.+- +=+++|+++.|.||||||||||+..+++... ..+|. +++++.... ....+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455543 3689999999999999999999999997432 22454 466665432 2233446666665444433455
Q ss_pred HHHHH
Q 008534 247 KETLT 251 (562)
Q Consensus 247 ~enl~ 251 (562)
.+.+.
T Consensus 125 e~~l~ 129 (356)
T 3hr8_A 125 EQALE 129 (356)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.60 E-value=4.4e-08 Score=106.39 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCcEEEEEecCCC
Q 008534 298 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 356 (562)
Q Consensus 298 GGqrqRv~IAraLl~~P~iLlLDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~Tvii~tH~~~ 356 (562)
|++++|-.+++|....|.|||+||+ +.|.|......+.+.|..+- ..+..||.+||++.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677777666777776663 24678899999874
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.56 E-value=2.4e-09 Score=102.37 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=45.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh---ccCcEEEEccCCCCCCCCCHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~---~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+++++|++..++.+++.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 3667899999999999999999999999843 7899998776421 122457777765444333444433
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.51 E-value=1.9e-10 Score=121.53 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=84.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHH
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 248 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~-l~~~lTV~e 248 (562)
..+|+++++.+++|++++|+||||||||||+++|+|. .+|.+..-..+- ..+...+++++|... ++++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999983 257776522111 112223667777654 233333222
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHH---cCCCc----ccccc----ccCcccCCCChhHHHHHHHHHHHhhCCCEE
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER----CQDTM----IGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~----~~~t~----vg~~~~~~LSGGqrqRv~IAraLl~~P~iL 317 (562)
++. .+.... ........+.+.+.. +.+.. ..+.. .-+.....+++|+++|+..+.+++..|+++
T Consensus 230 ~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 110 000000 000011222333321 00110 00000 001234568999999999988888999998
Q ss_pred E-EeCCCC
Q 008534 318 F-LDEPTS 324 (562)
Q Consensus 318 l-LDEPTs 324 (562)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
No 170
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.48 E-value=1.8e-08 Score=105.84 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=86.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---------CCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH---HHHH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE---TLTY 252 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~---------~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e---nl~~ 252 (562)
.++|+|++|||||||++.|+|..... +..|.|.++|.++. +....|++.+.+. ..|.. .+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHHHHHH
Confidence 39999999999999999999864310 34688999886541 2223455544321 11211 1111
Q ss_pred HHhh----C-CC-CCcc--HHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHH----HHH-hhCCCEEEE
Q 008534 253 AALL----R-LP-NTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPSLLFL 319 (562)
Q Consensus 253 ~~~~----~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA----raL-l~~P~iLlL 319 (562)
.... . .. .... .......+.++++.+++.+..--.+++. +..+|+|+++|+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 1000 0 00 0111 1222334567788777654332222332 345788899988887 555 334454
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH
Q 008534 320 DEPTSGLDSTTALRIVQMLQDIAE 343 (562)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~ 343 (562)
+|+|++|......+.+.|.++..
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.43 E-value=3.7e-09 Score=101.06 Aligned_cols=55 Identities=24% Similarity=0.249 Sum_probs=44.9
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEE--EECCEeCChh
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKS 226 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I--~i~G~~~~~~ 226 (562)
...+.+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++...
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~ 67 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHG 67 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhH
Confidence 4456778888889999999999999999999999998653 35777 8888766443
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.37 E-value=2.1e-07 Score=86.84 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=33.0
Q ss_pred cee--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 008534 171 DIL--NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM 208 (562)
Q Consensus 171 ~iL--~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~ 208 (562)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 356 7899999999 999999999999999999998654
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.37 E-value=2.8e-08 Score=99.23 Aligned_cols=52 Identities=33% Similarity=0.456 Sum_probs=35.7
Q ss_pred eEEEEeE-EEEEeecccCCccccceeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 149 YLKFTDV-TYKVILKGMTSSEEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 149 ~l~~~nv-s~~y~~~~~~~~~~~~iL~~vs~~i~~---Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|+++|| +++|. ....+|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99871 245799999999999 9999999999999999999999743
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.35 E-value=2.7e-07 Score=96.02 Aligned_cols=131 Identities=12% Similarity=0.180 Sum_probs=86.2
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g--------~~Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD--------RGVAVFSL------EMSAEQ 88 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT--------CEEEEEES------SSCHHH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC--------CeEEEEeC------CCCHHH
Confidence 3456777777899999999999999999999988885321 1 11 12445432 234333
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
.+ .++......+++.+..+ ..||.++++|+..|...+.+++++|.|+|...+
T Consensus 89 l~------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-- 140 (338)
T 4a1f_A 89 LA------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-- 140 (338)
T ss_dssp HH------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH--
T ss_pred HH------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH--
Confidence 22 12222222222222111 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHH-C-CcEEEEEec
Q 008534 329 TTALRIVQMLQDIAE-A-GKTVVTTIH 353 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~-~-g~Tvii~tH 353 (562)
.+|...++++.+ . |..+|+|-|
T Consensus 141 ---~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 ---EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp ---HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366666777654 3 677777755
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.33 E-value=1.1e-07 Score=90.09 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++|++++|+||||||||||+++|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999999965
No 176
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.30 E-value=6.6e-07 Score=102.80 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=56.8
Q ss_pred cCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEE-ecCCChHHHhcCCE
Q 008534 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 365 (562)
Q Consensus 293 ~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~-tH~~~~~i~~~~D~ 365 (562)
+.-+|.|+.+|..+++.++.+++++|+|||.. +||......+++.+.......++|+++ ||++ ..+.++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 34589999999999999999999999999996 999887777777766554445778885 8875 445566663
No 177
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=2.6e-07 Score=87.98 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=24.4
Q ss_pred CCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++....+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 7 HSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999743
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=1e-07 Score=98.39 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=57.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hc-----cCcEEEE-ccC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQD 237 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~--------~~-----~~~igyV-~Q~ 237 (562)
++++++|++++|++++|+||||+||||++..|++.+. ..+|+|.+.+.++.+ .+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998653 347899998877642 22 5568999 776
Q ss_pred CCCCCCCCHHHHHH
Q 008534 238 DVLFPHLTVKETLT 251 (562)
Q Consensus 238 ~~l~~~lTV~enl~ 251 (562)
....|..++++++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 54444434444444
No 179
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.28 E-value=5.2e-08 Score=96.85 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCCccEEE--------ECCEeCCh-----hccCcEEEE
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFV 234 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~---G~l~~~~~~G~I~--------i~G~~~~~-----~~~~~igyV 234 (562)
.++++++ ++|++++|+|||||||||++++|+ |..+ +++|.|. .+|.++.. .+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3455544 789999999999999999999999 8432 4689998 88887732 356778999
Q ss_pred ccCC
Q 008534 235 TQDD 238 (562)
Q Consensus 235 ~Q~~ 238 (562)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9754
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.24 E-value=4.2e-09 Score=115.04 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=85.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChh----ccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~----~~~~igyV~Q~~~-l~~~l 244 (562)
..+++++++.+++| ++|+||||+|||||+++|++... .+.|.++|.++... ..+++..++|... ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 35789999999999 99999999999999999998542 57899998765421 1234566777653 44555
Q ss_pred CHHHHHHHHHhhCCC-CCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCC
Q 008534 245 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (562)
Q Consensus 245 TV~enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPT 323 (562)
.+.|++......+.. ......+....+..++ ..||||++|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL------------------~~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH------------------HHGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHH------------------HHhcccccCccEEEEEecCChhh--cCccc
Confidence 566666422111100 0001122222333333 24788999998899999999987 89887
Q ss_pred C
Q 008534 324 S 324 (562)
Q Consensus 324 s 324 (562)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.24 E-value=1.7e-07 Score=89.34 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=71.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCCCCccH
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~~~~~~ 264 (562)
+++|+|||||||||+.++|++ + |...+++..+.+... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-------~-----~~-----------------~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-------A-----KD-----------------S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-------C-----SS-----------------C---
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-------c-----CC-----------------h---
Confidence 689999999999999999997 2 333444322111000 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 008534 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (562)
Q Consensus 265 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (562)
..+.++.+.+|... -.+.|+.+|..+++.+..+|..+.++ .+.++|.....+.+.+... .
T Consensus 45 ----~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ----HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ----HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 01233444455321 13678889999998888887654333 3345666655555544432 2
Q ss_pred CcEEEEEecCCChH-HHhcCCEEEEEc
Q 008534 345 GKTVVTTIHQPSSR-LFHKFDKLILLG 370 (562)
Q Consensus 345 g~Tvii~tH~~~~~-i~~~~D~i~vL~ 370 (562)
+.++|+.+|.+.+. +...||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56888888876542 246789888874
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.21 E-value=1.3e-06 Score=91.14 Aligned_cols=61 Identities=8% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEe--cCCC
Q 008534 294 RGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPS 356 (562)
Q Consensus 294 ~~LSGGqrqRv~IAraLl~~P~iLlLD-EPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~t--H~~~ 356 (562)
..+|+||+|++. +.+...++-|+++| +|+.++|......+++.+..... +..+|++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 468999998886 55556778889999 99999999998888888776543 77888888 7754
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.17 E-value=6.1e-06 Score=86.01 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=82.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEccCCC-CCCCC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 244 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~-l~~~l 244 (562)
..+|++++++++ .++|+|++|||||||++.|+|.-..|...|.++-....+. .......+...+.+. .|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 9999999999999999999995332343454432222111 001122333333221 11110
Q ss_pred -CHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---cCCCChhH
Q 008534 245 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 300 (562)
Q Consensus 245 -TV~enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~t~vg~~~---~~~LSGGq 300 (562)
.+.+.+. .+.....|- . ...||. |-.. ....++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 011111110 0 012321 2111 12357788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-cEEEEEec
Q 008534 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353 (562)
Q Consensus 301 rqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvii~tH 353 (562)
+++..+++..+.+|+++||.-..+..|... ...++.++.+...| .+|++++.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999877774333445443 45566666665445 57777665
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.12 E-value=1.8e-06 Score=92.86 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=61.9
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCcEEEEEecCCChHHHhcCCEEEE-EcCCeEEEecChH--HHHHHH
Q 008534 312 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS--EAMAYF 387 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~-~~~~~i~~~L~~l~~~g~Tvii~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--el~~~f 387 (562)
.+|++||+||+..-.+. .++..++..+..+.+.|+.||+++|++..++..+.+++.- +..|.++..++++ +..+.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6778889999888777899999999865432223344333 4567777776653 333322
Q ss_pred ----HhcCCCCCCCCChHHHHHHhhcCC
Q 008534 388 ----SSIGCSPQIAMNPAEFLLDLANGN 411 (562)
Q Consensus 388 ----~~~g~~~~~~~npad~~~~~~~~~ 411 (562)
...|...+ ....+++.....++
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~~gn 298 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENVDDN 298 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHCCSC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhcCCC
Confidence 33344333 23456665554433
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.10 E-value=6.3e-07 Score=84.10 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
.+|++++|+||||||||||+++|++.+. +...|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeec
Confidence 3689999999999999999999998542 223455543
No 186
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.05 E-value=1.1e-05 Score=83.49 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCcEEEEEecCCC
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQPS 356 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~---~g~Tvii~tH~~~ 356 (562)
.+|.+|++||+... |+.....+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888776655 5788999999863
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.04 E-value=1.8e-07 Score=86.82 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcccc
Confidence 468999999999999999999999742 77888876653
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.04 E-value=1.9e-06 Score=97.44 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=77.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHH
Q 008534 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (562)
Q Consensus 177 s~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~----~~~~~igyV~Q~~~l~~~lTV~enl~~ 252 (562)
|+.+++|..++|+|++|+|||||++.|++........|+| .+|..+.. +.++.+++.+|...++.. ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 4567889999999999999999999999643211246777 56655432 234556776665544321 11111
Q ss_pred HHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 008534 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (562)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~~~~ 332 (562)
..||. |.. .++ .......-..++.++++| |+.|+++.+.
T Consensus 78 ------------------------------liDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 78 ------------------------------LLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp ------------------------------EEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred ------------------------------EEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 12221 110 111 112222235678899999 9999998876
Q ss_pred HHHHHHHHHHHCCcEEEEEecCCC
Q 008534 333 RIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 333 ~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
.+++ .+.+.+.++|++.|..+
T Consensus 117 ~~~~---~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 RAWT---VAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHHH---HHHHTTCCEEEEEECGG
T ss_pred HHHH---HHHHccCCEEEEecCCc
Confidence 3333 33345888999999854
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.03 E-value=2.2e-05 Score=81.45 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=79.7
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 008534 173 LNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (562)
Q Consensus 173 L~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~ 251 (562)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44443 4689999999999999999999999886422121101 1 01235566554321 1222222
Q ss_pred HHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhH-HHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 008534 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEII----INPSLLFLDEPTSGL 326 (562)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IAraLl----~~P~iLlLDEPTsgL 326 (562)
+..... ... .++++.+-+. ...++.+ .+.+..++.++ .+++++++|+.++-+
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 221111 111 1223322111 1223332 24555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 327 DST------------TALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 327 D~~------------~~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
... ...+++..|+.+++ .+.+||++.|-
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 442 12455566666654 48899888885
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.95 E-value=2.2e-06 Score=83.59 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=34.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
+..++|++++|+|+||||||||+++|+|. +|+|.+.+.|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 34578999999999999999999999983 57888888764
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.95 E-value=9e-06 Score=83.42 Aligned_cols=134 Identities=11% Similarity=0.113 Sum_probs=85.6
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+.|+.+.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.=+ ++..+
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHH
Confidence 3456788877799999999999999999999988874221 111 135555432 34443
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
... ++......+.+.+..+ | ...||.++++|+..|...+.++++++.|+|...
T Consensus 111 l~~------------------R~~~~~~~i~~~~l~~---~---~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--- 163 (315)
T 3bh0_A 111 NIK------------------RLIVTAGSINAQKIKA---A---RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--- 163 (315)
T ss_dssp HHH------------------HHHHHHTTCCHHHHHS---C---HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB---
T ss_pred HHH------------------HHHHHHcCCCHHHHhc---C---CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC---
Confidence 322 1111111122111111 0 012899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHHC-CcE--EEEEecC
Q 008534 329 TTALRIVQMLQDIAEA-GKT--VVTTIHQ 354 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~~-g~T--vii~tH~ 354 (562)
..++...++++.++ |.. +|++-|-
T Consensus 164 --~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 --VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566666776544 666 8877664
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.93 E-value=4.6e-05 Score=78.31 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=80.3
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl 250 (562)
.|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHH
Confidence 444443 5689999999999999999999998886432221111 1 01235566544321 112111
Q ss_pred HHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChh-HHHHHHHHHHHh---hCCCEEEEeCCCCCC
Q 008534 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGL 326 (562)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IAraLl---~~P~iLlLDEPTsgL 326 (562)
.+...+. ... .++++.+- + .+..+.. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~--------~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIY--------Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEE--------E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEE--------E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1211111 111 11222111 1 1123333 335677788887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHH-CCcEEEEEecC
Q 008534 327 DS--------TT----ALRIVQMLQDIAE-AGKTVVTTIHQ 354 (562)
Q Consensus 327 D~--------~~----~~~i~~~L~~l~~-~g~Tvii~tH~ 354 (562)
+. .. ..+++..|+.+++ .+.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 33 11 2445556666654 38899988775
No 193
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.92 E-value=3.4e-06 Score=79.40 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|++++|+||||||||||+++|+|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999999965
No 194
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=5.1e-05 Score=76.11 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCcEEEEEecCC---ChHH
Q 008534 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQP---SSRL 359 (562)
Q Consensus 297 SGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~~----------~~~~i~~~L~~l~~----~g~Tvii~tH~~---~~~i 359 (562)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+|+++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777777888888899999999998776532 22234444443321 134567778864 3334
Q ss_pred HhcCCEEEEE
Q 008534 360 FHKFDKLILL 369 (562)
Q Consensus 360 ~~~~D~i~vL 369 (562)
.+-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556665544
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.87 E-value=4.3e-06 Score=80.29 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999864
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.84 E-value=9.2e-06 Score=77.39 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=36.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~ 243 (562)
-++++|++++|+|++|||||||+++|++.+. .+.+++||+.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST---------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---------------------CcEEEeCCccccCH
Confidence 3567899999999999999999999997431 26778888777653
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.78 E-value=1.6e-05 Score=81.07 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--EEEEEecCCChHHHhcCCEE
Q 008534 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 366 (562)
Q Consensus 296 LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--Tvii~tH~~~~~i~~~~D~i 366 (562)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+..++|.|
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 898886 5666676 68999999 7889876 66777888888653 43 5555666633 244444443
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.77 E-value=9.1e-06 Score=78.13 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+|++++|+||||||||||++.|++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3489999999999999999999999854
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.70 E-value=6.4e-05 Score=80.55 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=27.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEE
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i 218 (562)
++.+++++||+||||||++..|++.+. ..++.|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEE
Confidence 578999999999999999999997543 22444444
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.68 E-value=7.2e-06 Score=78.20 Aligned_cols=41 Identities=39% Similarity=0.297 Sum_probs=32.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
.++|++++|+|+||||||||+++|++.+. +.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998542 235777665543
No 201
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.65 E-value=2.3e-06 Score=82.41 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=41.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEE--------CCEeCCh-----hccCcEEEEccCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 238 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i--------~G~~~~~-----~~~~~igyV~Q~~ 238 (562)
+.+++|+|||||||||+.++|++.+-- ..+.|.+.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999974311 135687776 6766542 3566788898864
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.64 E-value=3.4e-06 Score=87.11 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=43.7
Q ss_pred ccceeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCC
Q 008534 169 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge------~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~ 242 (562)
.+..|++++..+..++ ++||+||||||||||+++|.+.+...+.+| .++++.+|...++
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------------CEEEEEGGGGBCC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------------eEEEEeecccccc
Confidence 4567888888887776 999999999999999999998553211122 3667777766554
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=5.4e-06 Score=91.62 Aligned_cols=43 Identities=33% Similarity=0.510 Sum_probs=35.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc-EE-EECCEeC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SI-TYNDHPY 223 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G-~I-~i~G~~~ 223 (562)
.+++|++++|+|+||||||||+++|+|.+. +.+| .| ++||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999663 3344 67 4888654
No 204
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.61 E-value=1.3e-05 Score=78.29 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=77.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhhCCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~enl~~~~~~~~~ 259 (562)
+..|+.++|.||+||||||++.++..... ...|. ...++++.+.|......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~~------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF--IQNDR------------AAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH--HHTTC------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch--hhcCC------------CCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 35799999999999999999887763110 00110 12355666666544344555555432110000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccc--cCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 008534 260 NTLTKQQKEKRAIDVINELGLERCQDTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQ 336 (562)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~v--g~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTs-gLD~~~~~~i~~ 336 (562)
. ..|.....+... .+..+--.+-|.-.+.. ...+.+-+++++||.-. ++|......+++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000000000 00001112445555542 33578999999999976 687766655555
Q ss_pred HHHHHHHCCcEEEEEecCCChHHHhcCC
Q 008534 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (562)
Q Consensus 337 ~L~~l~~~g~Tvii~tH~~~~~i~~~~D 364 (562)
.+......-++++++.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 5444333335666664433443444443
No 205
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.59 E-value=7e-05 Score=68.34 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666666 999999999999999999973
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=0.00011 Score=74.51 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.++..+.|.||+|+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 46788999999999999999999999743
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.57 E-value=6.5e-06 Score=76.59 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=30.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc--EEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G--~I~i~G~~~ 223 (562)
++|++++|+|++||||||+.++|++.+. + .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHH
Confidence 4789999999999999999999998542 1 35 566666544
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=2.9e-05 Score=71.31 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.49 E-value=3.4e-05 Score=79.35 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++..+.|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999743
No 210
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.44 E-value=1.2e-05 Score=84.82 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=44.6
Q ss_pred eEEEEeEEEEEeecccCCccccceee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 149 YLKFTDVTYKVILKGMTSSEEKDILN--------------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 149 ~l~~~nvs~~y~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||++.|+ .++.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP-------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA-------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC-------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC-------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 477999999873 2456888 89999999999999999999999999999863
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.36 E-value=0.00012 Score=84.36 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.+++|+.++|+||||+|||||+++|++.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 368899999999999999999999999854
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00053 Score=71.62 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=28.7
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.|+.+- +=+++|+++.|.||+|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 3589999999999999999999988875
No 213
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.32 E-value=0.0012 Score=64.14 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999854
No 214
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.29 E-value=0.00011 Score=78.44 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.+|++++|+|||||||||||++|++.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 456789999999999999999999999854
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.28 E-value=1.9e-05 Score=81.83 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=40.4
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCE
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~ 221 (562)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+. +.+|.|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEee
Confidence 3468899999999999999999999999999999998542 23455544333
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.26 E-value=0.00028 Score=67.59 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999874
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.25 E-value=0.00023 Score=76.14 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=38.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC----------CCCccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHH
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~----------~~~~G~I~i~G~~~~----~~~~~~igyV~Q~~~l~~~lTV~en 249 (562)
-.++|+|+||+|||||++.|+|.... .+..|.+.++|.++. ...++..++.+|....|..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999985320 134688999998642 1233344455555445544444444
Q ss_pred HHH
Q 008534 250 LTY 252 (562)
Q Consensus 250 l~~ 252 (562)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.22 E-value=4.5e-05 Score=84.13 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=39.7
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEe
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~ 222 (562)
..+++++++++ +|+.++|+||||+|||||+++|++.+. ...|.|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 45778888888 899999999999999999999998553 335778777643
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.21 E-value=0.00019 Score=68.56 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.0
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCcE-EEEEecCCC
Q 008534 312 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQPS 356 (562)
Q Consensus 312 ~~P~iLlLDEPTsgL-D~~~~~~i~~~L~~l~~~g~T-vii~tH~~~ 356 (562)
.+|.+|++||.-.-- +......+.+.+......+.. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233367788888887666655 788777543
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.21 E-value=0.00016 Score=70.76 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=26.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~vs~~i~---~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-|.++++++. +|.+++|.||+||||||+++.|+..+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4777777776 99999999999999999999999865
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.10 E-value=0.0009 Score=68.05 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.7
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 311 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 311 l~~P~iLlLDEPTs-gLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+.+|.+||+||+-. ..+...+..+...+..+.+.+..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999865 2344778888889888877777788887754
No 222
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.00059 Score=67.77 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=23.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.++.-+.|.||+|+|||||++.|+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356677999999999999999999974
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.0017 Score=66.18 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.2
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 172 iL~~vs-~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444443 4689999999999999999999988874
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.08 E-value=0.00068 Score=63.85 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+.|.||+|+|||||++.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999643
No 225
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.06 E-value=0.00013 Score=75.91 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
+++.+++|+|++|||||||++.|+|.+. +.+|.|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 4678999999999999999999998542 2356666555443
No 226
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.06 E-value=0.0018 Score=69.54 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=30.3
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+-|+.+..-+++|+++.|.|++|+|||||+--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666666689999999999999999999877774
No 227
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.04 E-value=0.00026 Score=66.27 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999964
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.01 E-value=0.00029 Score=66.96 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999999744
No 229
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.94 E-value=0.0023 Score=68.51 Aligned_cols=132 Identities=11% Similarity=0.156 Sum_probs=81.5
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+.+-|+.+.+-+++|+++.|.|++|+|||||+.-++.... ...| ..+.|+.=+ ++..+
T Consensus 186 G~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~ 243 (444)
T 2q6t_A 186 GFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQ 243 (444)
T ss_dssp SCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHH
T ss_pred CCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHH
Confidence 3456777777799999999999999999999988885321 0011 124554432 33322
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~iLlLDEPTsgLD~ 328 (562)
.. .+.... ..+++.. ... ...|+..+.+|+.-|...+.+.++++.|+|.. +.
T Consensus 244 l~------------------~R~~~~--~~~i~~~--~l~----~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~ 295 (444)
T 2q6t_A 244 LT------------------LRMMCS--EARIDMN--RVR----LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL 295 (444)
T ss_dssp HH------------------HHHHHH--HTTCCTT--TCC----GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH
T ss_pred HH------------------HHHHHH--HcCCCHH--HHh----CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH
Confidence 11 111111 1233211 110 12599999999999988888889999887743 33
Q ss_pred HHHHHHHHHHHHHHH-CCcEEEEEec
Q 008534 329 TTALRIVQMLQDIAE-AGKTVVTTIH 353 (562)
Q Consensus 329 ~~~~~i~~~L~~l~~-~g~Tvii~tH 353 (562)
.++...++++.+ .+..+|++-+
T Consensus 296 ---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 296 ---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 345556666653 4667777754
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00022 Score=68.14 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCcc--EEEECCEe
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 222 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G--~I~i~G~~ 222 (562)
..+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3457899999999999999999999997542 2346 77777543
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.89 E-value=0.0025 Score=62.16 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+|+++++||.-. |+. ++++.++.+++.|.+||++-| ..+..+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777767999999999 55567778999998875
No 232
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.88 E-value=0.00088 Score=69.99 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.4
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 008534 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (562)
Q Consensus 173 L~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~ 204 (562)
+++..+++.+| +++|+|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46777888886 99999999999999999986
No 233
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.88 E-value=0.0005 Score=63.23 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999984
No 234
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.87 E-value=0.0049 Score=63.90 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999964
No 235
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.83 E-value=0.0046 Score=60.18 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||||++.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999963
No 236
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.81 E-value=0.00026 Score=66.65 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.8
Q ss_pred ccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999988884 789999999999999999863
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.80 E-value=0.00029 Score=75.32 Aligned_cols=47 Identities=21% Similarity=0.047 Sum_probs=38.8
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 008534 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (562)
Q Consensus 174 ~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~ 224 (562)
++++++ +|++++++|+|||||||++..|++.+. ..+|.|.+.+.++.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeecccc
Confidence 677777 899999999999999999999998653 34688888776653
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00052 Score=64.73 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999997
No 239
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.77 E-value=0.00059 Score=63.69 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=21.1
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 6799999999999999999974
No 240
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.71 E-value=0.00011 Score=76.88 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=33.7
Q ss_pred ceeEEEEeEEEEEeecccCCccccceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 147 ~~~l~~~nvs~~y~~~~~~~~~~~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+..+.+.|++..| ..+.++++++|+| +|+|++|+|||||++.|.|.
T Consensus 15 ~~~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 3467788877654 2456889999987 99999999999999999874
No 241
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.68 E-value=0.00042 Score=68.40 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.6
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
++++.. ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 444444 567789999999999999999999997542 24577777544
No 242
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.63 E-value=0.00098 Score=61.67 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.0011 Score=61.77 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=24.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999754
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.58 E-value=0.00024 Score=74.05 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 008534 171 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999998 9999999999999999999853
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.56 E-value=0.0012 Score=59.97 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.++|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 246
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.54 E-value=0.00098 Score=62.91 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999974
No 247
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.54 E-value=0.00025 Score=72.23 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=35.8
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 008534 174 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (562)
Q Consensus 174 ~~-vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~ 223 (562)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 45 677766 99999999999999999999998543 2356666655443
No 248
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.53 E-value=0.0052 Score=60.30 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CcEEEEEecC
Q 008534 298 GGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQ 354 (562)
Q Consensus 298 GGqrqRv~IAraLl---~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~---g~Tvii~tH~ 354 (562)
.|++.+-.+.+++. .+++++|+--+.+.++.. ...+++.++++... +.++|+++|-
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEch
Confidence 34455555556653 677776655444555543 45666777665322 5789999986
No 249
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.52 E-value=0.008 Score=73.90 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=25.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
=+++|+++.|.||+|+|||||+..++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~ 754 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIA 754 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHH
Confidence 499999999999999999999999986
No 250
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0015 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999754
No 251
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.47 E-value=0.0014 Score=59.44 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0022 Score=65.72 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 253
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.00036 Score=71.68 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.9
Q ss_pred ccceeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 008534 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~alvGpsGsGKSTLl~~L~G~l 207 (562)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34688899999999999 9999999999999999999854
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.34 E-value=0.0012 Score=64.66 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.1
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 172 iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++++++.+++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455555555555 8899999999999999999743
No 255
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0018 Score=62.85 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999999973
No 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.31 E-value=0.0021 Score=59.38 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
|.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999853
No 257
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.30 E-value=0.002 Score=59.11 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999973
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.28 E-value=0.002 Score=59.47 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999973
No 259
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.27 E-value=0.0019 Score=59.86 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+++.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999985
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.21 E-value=0.0023 Score=59.94 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=27.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CCCccEEEECCE
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 221 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l~~-~~~~G~I~i~G~ 221 (562)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58999999999999999999975421 112356665543
No 261
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.19 E-value=0.0025 Score=57.53 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008534 185 VLALMGPSGSGKTTLLNLL 203 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L 203 (562)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.18 E-value=0.043 Score=57.32 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.5
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 579999999999999999999977764
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.17 E-value=0.0033 Score=61.50 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=45.5
Q ss_pred HHHHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCcEEEEEecCC---------------------ChHHHhcC
Q 008534 306 IGNEIIINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQP---------------------SSRLFHKF 363 (562)
Q Consensus 306 IAraLl~~P~iLlLDEPTsg-LD~~~~~~i~~~L~~l~~~g~Tvii~tH~~---------------------~~~i~~~~ 363 (562)
+..+|..+|+++|+||+-.- .+.......++.+..+...|..++.++|-- .+.+++.|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 33445578999999997642 332222333444444555688899988821 12244566
Q ss_pred CEEEEEcCCeEEEecChHHHHHHHHh
Q 008534 364 DKLILLGKGSLLYFGKASEAMAYFSS 389 (562)
Q Consensus 364 D~i~vL~~G~iv~~G~~~el~~~f~~ 389 (562)
|.|.+++ =+|+++++.+..
T Consensus 157 ~~v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 157 FDLVLID-------LPPRELLERLRD 175 (228)
T ss_dssp SEEEEBC-------CCHHHHHHHHHT
T ss_pred CeEEEec-------CCHHHHHHHHHC
Confidence 7766653 467777766554
No 264
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.16 E-value=0.086 Score=56.99 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.2
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877764
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.16 E-value=0.0026 Score=62.53 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.10 E-value=0.003 Score=58.32 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999853
No 267
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.09 E-value=0.0027 Score=67.12 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=31.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCccEEEECCE
Q 008534 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 221 (562)
Q Consensus 179 ~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~---------~~~~~G~I~i~G~ 221 (562)
.+..|..++|+|+||+|||||++.|+|.-. ..+..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 556788899999999999999999998511 1134577777653
No 268
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.09 E-value=0.003 Score=63.67 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G 220 (562)
..|.++.|.|||||||||+.+.|+..+. .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4577999999999999999999986431 35566665
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.07 E-value=0.003 Score=62.42 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||||||||||.+.|+..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999743
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.07 E-value=0.0029 Score=59.99 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999998754
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.06 E-value=0.0032 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|+|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999743
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.03 E-value=0.0037 Score=58.64 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999644
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.03 E-value=0.0037 Score=59.62 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
No 274
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.03 E-value=0.0036 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999644
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.98 E-value=0.0039 Score=56.93 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.96 E-value=0.0033 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+..+.|+|++||||||+.+.|+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 277
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.89 E-value=0.039 Score=57.58 Aligned_cols=26 Identities=38% Similarity=0.684 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++.-+.|.||+|+|||+|++.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999964
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.88 E-value=0.0042 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+|.+++|.|++||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.88 E-value=0.004 Score=57.84 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.+++|+|++||||||+.+.|+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999985
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.87 E-value=0.002 Score=60.85 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998744
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.83 E-value=0.0043 Score=57.01 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999964
No 282
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.80 E-value=0.0046 Score=58.28 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|.+++|.|++||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 283
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.80 E-value=0.0087 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999766653
No 284
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.78 E-value=0.0051 Score=57.43 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
No 285
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.78 E-value=0.0055 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++.+++|.|++||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.75 E-value=0.0047 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 287
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.69 E-value=0.024 Score=53.74 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+.+++++||.-- +|+. +++.++.++..|..||++-+ ..+..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999644 6643 35667777777999999998 44566778899887764
No 288
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.66 E-value=0.026 Score=70.40 Aligned_cols=150 Identities=16% Similarity=0.213 Sum_probs=84.9
Q ss_pred ceeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGITG--SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs~--~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
+-|+.+-. =+++|+++.|.||+|+|||||...++.... . .| ..+.|+.-+..+-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~-~G--------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--R-EG--------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-cC--------------CeEEEEEcCCCHHH---HH-
Confidence 44665543 599999999999999999999887774221 1 11 12444443322110 00
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgL 326 (562)
+. .+|++. .+-.+- ...+. .+-+.+++.|+ .+|+++++|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 112110 000111 11233 23456667665 479999999988755
Q ss_pred C-H------------HHHHHHHHHHHHH---H-HCCcEEEEEecCCCh---------------HHHhcCCEEEEEcCCeE
Q 008534 327 D-S------------TTALRIVQMLQDI---A-EAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 D-~------------~~~~~i~~~L~~l---~-~~g~Tvii~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (562)
. + .....+.+.|+.| + +.+.+||++.|--.. .+...+|-++.|+....
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1233455666666 3 358899998874211 25567888888876543
No 289
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.59 E-value=0.005 Score=57.26 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+++.+++|.|++||||||+.+.|+-
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999985
No 290
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.57 E-value=0.0057 Score=60.66 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|||||||++.|+|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 291
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.55 E-value=0.0073 Score=57.68 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+|-.++|+|++||||||+.+.|+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999853
No 292
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.54 E-value=0.0048 Score=56.69 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999853
No 293
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.46 E-value=0.0076 Score=55.92 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 294
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0079 Score=55.44 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++.|.+.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999984
No 295
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.40 E-value=0.012 Score=60.16 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=32.0
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+|+..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46889988888 8899999999999999999999863
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.37 E-value=0.041 Score=67.76 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=86.4
Q ss_pred ceeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 008534 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (562)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l~~~~~~G~I~i~G~~~~~~~~~~igyV~Q~~~l~~~lTV~e 248 (562)
.-|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H--
Confidence 4566664 3599999999999999999999877764221 011 23556654432211 0
Q ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHcCCCccccccccCcccCCCChhHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 008534 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (562)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IAraLl--~~P~iLlLDEPTsgL 326 (562)
++. .+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..++=.
T Consensus 427 ---~a~----------------------~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YAR----------------------KLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HHH----------------------HTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HHH----------------------HcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 011 122210 000010 0112332 334556665 479999999998866
Q ss_pred CH-------------HHHHHHHHHHHHH---H-HCCcEEEEEecCC---------------ChHHHhcCCEEEEEcCCeE
Q 008534 327 DS-------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSL 374 (562)
Q Consensus 327 D~-------------~~~~~i~~~L~~l---~-~~g~Tvii~tH~~---------------~~~i~~~~D~i~vL~~G~i 374 (562)
.. ...+.+.+.++.| + +.|.+||++.|-- ...+...+|-++.+...+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 3589999998842 1235567898888876544
Q ss_pred EEe
Q 008534 375 LYF 377 (562)
Q Consensus 375 v~~ 377 (562)
+..
T Consensus 555 ~~~ 557 (1706)
T 3cmw_A 555 VKE 557 (1706)
T ss_dssp EEE
T ss_pred ccc
Confidence 333
No 297
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.37 E-value=0.0087 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+|++|||||||+..|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
No 298
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.35 E-value=0.0081 Score=57.70 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.+++|+|++||||||+.+.|+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999985
No 299
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.32 E-value=0.027 Score=50.24 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+..+|++||.- .|++..+..+.+.+.+....+..+|++|...
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 34689999964 6788888888888776533355677777653
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.32 E-value=0.0082 Score=53.50 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.31 E-value=0.009 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999974
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.30 E-value=0.01 Score=55.76 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-+++|+|++||||||+.+.|+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 303
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.27 E-value=0.0093 Score=56.52 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 304
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.27 E-value=0.0094 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.25 E-value=0.0096 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999974
No 306
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.24 E-value=0.0076 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998743
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.23 E-value=0.0093 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.23 E-value=0.01 Score=54.81 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.19 E-value=0.0095 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.18 E-value=0.011 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999974
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.18 E-value=0.0087 Score=52.86 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 312
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.18 E-value=0.0084 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+.+++|+||+||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999853
No 313
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.17 E-value=0.01 Score=53.08 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999863
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.17 E-value=0.011 Score=55.38 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|.|++||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 315
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.15 E-value=0.0093 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.15 E-value=0.012 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.14 E-value=0.011 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999985
No 318
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.14 E-value=0.01 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999854
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.12 E-value=0.012 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
No 320
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.12 E-value=0.011 Score=56.07 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 321
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.10 E-value=0.0098 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 322
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.10 E-value=0.01 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.10 E-value=0.012 Score=53.23 Aligned_cols=21 Identities=43% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 324
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.10 E-value=0.011 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999974
No 325
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.10 E-value=0.011 Score=59.07 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.09 E-value=0.0069 Score=63.39 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCcEEEEEecCCCh
Q 008534 313 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD---~~~~~~i~~~L~~l~~~g~Tvii~tH~~~~ 357 (562)
.|.++++||.=.-++ +.....+.+.+++..+.|..++++||.++.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988884 667777888888887789999999999864
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.07 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.06 E-value=0.011 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 329
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.06 E-value=0.011 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 330
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.06 E-value=0.0099 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999743
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.04 E-value=0.014 Score=52.68 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999874
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.03 E-value=0.0099 Score=54.82 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 333
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.00 E-value=0.01 Score=54.52 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 334
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.96 E-value=0.012 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.94 E-value=0.014 Score=56.96 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++-+++|.||+||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 566899999999999999999984
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.93 E-value=0.012 Score=53.92 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.93 E-value=0.011 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 338
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.91 E-value=0.013 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999985
No 339
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.90 E-value=0.013 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999865
No 340
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.90 E-value=0.013 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.88 E-value=0.013 Score=53.34 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.85 E-value=0.015 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 343
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.84 E-value=0.012 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999974
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.84 E-value=0.013 Score=53.35 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 345
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.81 E-value=0.014 Score=52.23 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 346
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.80 E-value=0.014 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 347
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.79 E-value=0.28 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998644
No 348
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.79 E-value=0.024 Score=59.16 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCCCccEEEECC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 220 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l~---------~~~~~G~I~i~G 220 (562)
|-.++|+|.+|+|||||++.|+|.-. ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 012357777765
No 349
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.75 E-value=0.015 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 350
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.73 E-value=0.024 Score=58.66 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.+++|+||+|||||||...|+-.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45699999999999999999999644
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.70 E-value=0.016 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998633
No 352
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.68 E-value=0.014 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.68 E-value=0.016 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999974
No 354
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.016 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 355
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.0096 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999874
No 356
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.65 E-value=0.016 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999999743
No 357
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.61 E-value=0.018 Score=55.31 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.60 E-value=0.018 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|.|+.||||||+.+.|+-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.59 E-value=0.017 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 360
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.59 E-value=0.021 Score=51.71 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 361
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.58 E-value=0.094 Score=51.34 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=43.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecC---------CChHHHhcCCEEEEEc
Q 008534 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 370 (562)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~---------~~~~i~~~~D~i~vL~ 370 (562)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 555555556679999999999 8888889999998875
No 362
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.56 E-value=0.017 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
|-.++|+|++||||||+.+.|+-.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999853
No 363
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.56 E-value=0.019 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 364
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.52 E-value=0.02 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+.|.||+|+|||||+++|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 689999999999999999999754
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.51 E-value=0.019 Score=54.11 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 366
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.51 E-value=0.034 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=29.6
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+++.-..+ .|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45677766655 6789999999999999999999854
No 367
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.47 E-value=0.018 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
No 368
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.46 E-value=0.017 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.45 E-value=0.018 Score=56.83 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 370
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.45 E-value=0.02 Score=58.08 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 371
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.44 E-value=0.019 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 372
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.42 E-value=0.019 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 373
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.42 E-value=0.016 Score=57.57 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 374
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.42 E-value=0.019 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 375
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.40 E-value=0.019 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+.=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999874
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.38 E-value=0.019 Score=57.46 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.38 E-value=0.017 Score=54.02 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.37 E-value=0.02 Score=54.37 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.018 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.34 E-value=0.021 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57899999999999999998753
No 381
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.33 E-value=0.025 Score=54.41 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|.|++||||||+++.|+-.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998644
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.33 E-value=0.019 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 383
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.33 E-value=0.021 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 384
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.32 E-value=0.022 Score=57.79 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999985
No 385
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.32 E-value=0.019 Score=56.06 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=21.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+|.+++|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998644
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.32 E-value=0.023 Score=56.70 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.30 E-value=0.025 Score=54.82 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999953
No 388
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.019 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.28 E-value=0.023 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.28 E-value=0.019 Score=60.01 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999974
No 391
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.28 E-value=0.022 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.26 E-value=0.012 Score=59.37 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.25 E-value=0.026 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+..+.|+|+.||||||+.+.|+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
No 394
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.24 E-value=0.027 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 395
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.22 E-value=0.023 Score=52.24 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.20 E-value=0.022 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999863
No 397
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.17 E-value=0.026 Score=55.81 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999983
No 398
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.16 E-value=0.023 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999999854
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.16 E-value=0.025 Score=52.64 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 400
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.14 E-value=0.024 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 401
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 402
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.14 E-value=0.021 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999999753
No 403
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.13 E-value=0.014 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.12 E-value=0.022 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 405
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.024 Score=51.86 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.022 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 407
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.07 E-value=0.12 Score=49.92 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEec---------CCChHHHhcCCEEEEEc
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH---------~~~~~i~~~~D~i~vL~ 370 (562)
+.+++++||.-- +|+. +++.|+.++..|+.||++-+ .+...+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6643 33667777777999999999 66677778888888774
No 408
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.06 E-value=0.025 Score=59.90 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
-.+..++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999985
No 409
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.06 E-value=0.025 Score=52.06 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 410
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.06 E-value=0.025 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
=.++|+|++|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 411
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.026 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 412
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.04 E-value=0.026 Score=56.24 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+|||||||++.|+|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 413
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.03 E-value=0.023 Score=52.98 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 414
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.03 E-value=0.025 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 415
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.03 E-value=0.026 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.02 E-value=0.027 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 417
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.02 E-value=0.033 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.02 E-value=0.027 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 419
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.025 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
=.++|+|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999996
No 420
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.99 E-value=0.026 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 421
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.99 E-value=0.019 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 422
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.98 E-value=0.026 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 423
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.98 E-value=0.029 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999974
No 424
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.94 E-value=0.037 Score=52.96 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=38.5
Q ss_pred hCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CcEEEEEecCCCh---------HHHhcCCEEEEEc
Q 008534 312 INPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 370 (562)
Q Consensus 312 ~~P~iLlLDEPTs----gLD~~~~~~i~~~L~~l~~~-g~Tvii~tH~~~~---------~i~~~~D~i~vL~ 370 (562)
.+|+++++|--+. .-|.....+++..|+.++++ |.++++++|.... .+...+|-|+.|+
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 4788999986432 11444556777778777654 8999999885321 1234678887774
No 425
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.92 E-value=0.022 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 426
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.92 E-value=0.03 Score=54.96 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.90 E-value=0.024 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999974
No 428
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.90 E-value=0.025 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999888643
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.84 E-value=0.031 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.027 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.80 E-value=0.031 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999644
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.77 E-value=0.031 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888864
No 433
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.76 E-value=0.034 Score=53.58 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+|.+++|.|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.76 E-value=0.034 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
++.|+||+||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999995
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.72 E-value=0.038 Score=56.62 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999643
No 436
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.71 E-value=0.034 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.70 E-value=0.031 Score=52.80 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 438
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.70 E-value=0.038 Score=51.73 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
+|.+|++||.-. +|+.....+++.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7877777766666432 12567788887753
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.67 E-value=0.029 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999853
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.038 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.+++|-|+.||||||+.+.|+-.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999654
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.63 E-value=0.021 Score=51.88 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 442
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.63 E-value=0.041 Score=53.47 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998644
No 443
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.63 E-value=0.036 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|.++++.|++||||||+.+.|+-.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999999755
No 444
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.63 E-value=0.042 Score=54.47 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 445
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.61 E-value=0.033 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+-+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999963
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.56 E-value=0.026 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567899999999999999999999644
No 447
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.52 E-value=0.032 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999974
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.51 E-value=0.031 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
-.++|+|++|+|||||++.+.+
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 449
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.51 E-value=0.038 Score=56.75 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999743
No 450
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.39 E-value=0.036 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 451
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.38 E-value=0.17 Score=57.53 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+.|.||+|+|||+|.+.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999643
No 452
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.32 E-value=0.041 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.|.|.-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
No 453
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.30 E-value=0.041 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 454
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.29 E-value=0.048 Score=58.80 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.6
Q ss_pred ceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+++.+ ..+-+|+.++|+||+|+|||||++.|+..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 456666 56778999999999999999999999863
No 455
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.27 E-value=0.04 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
-.++|+|++|+|||||++-++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998863
No 456
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.26 E-value=0.048 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999873
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.15 E-value=0.2 Score=62.72 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=30.5
Q ss_pred ceeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 171 DILNGITG--SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 171 ~iL~~vs~--~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.-|+.+.. =+++|+++.|.|++|+|||||+..++..
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~ 755 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34666664 6999999999999999999999988863
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.10 E-value=0.021 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998863
No 459
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.046 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 460
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.05 E-value=0.043 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999874
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.97 E-value=0.059 Score=55.09 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
..+++|+||+|||||||...|+-.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 357999999999999999999964
No 462
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.96 E-value=0.042 Score=58.76 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999983
No 463
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.96 E-value=0.03 Score=51.29 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 008534 184 EVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G 205 (562)
=.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999975
No 464
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.91 E-value=0.087 Score=49.45 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=27.5
Q ss_pred cceeeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+..+|..-.. -.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3456655554 4578999999999999999988874
No 465
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.89 E-value=0.013 Score=57.35 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 175 ~vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
++....+.| +.|.||+|+|||||++.|+..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 333444455 779999999999999999974
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.88 E-value=0.021 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 467
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.81 E-value=0.048 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~ 206 (562)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 468
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.75 E-value=0.055 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
-.++++|.+|+|||||++.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999854
No 469
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.73 E-value=0.017 Score=66.44 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=28.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 176 vs~~i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++.+.+|+.++|.||||+|||||.++|++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46677899999999999999999999999843
No 470
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.73 E-value=0.054 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.65 E-value=0.052 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 472
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.48 E-value=0.066 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 008534 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 184 e~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998643
No 473
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.48 E-value=0.18 Score=54.59 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=52.7
Q ss_pred cCCCChhHHHHHH--HHHHHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 293 VRGVSGGERKRVC--IGNEIII---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 293 ~~~LSGGqrqRv~--IAraLl~---------------~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
..++||||+|-.- |+.+++. .-++++|||+ +-+|.......++.++++ |.=+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999643 3334332 1257999999 999999999999999865 6667777755
Q ss_pred ChHHHhcCCEEEEEc
Q 008534 356 SSRLFHKFDKLILLG 370 (562)
Q Consensus 356 ~~~i~~~~D~i~vL~ 370 (562)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2456788888774
No 474
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.065 Score=49.56 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
++.+|++||. ..+++.....+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999995 4567776666666665532 245566666654
No 475
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.40 E-value=0.072 Score=47.44 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~ 355 (562)
+..+|++||. ..|++..+..+++.|... ..+..+|++|..+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSC
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcC
Confidence 3467999998 468888888888887332 1245677777664
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.38 E-value=0.073 Score=49.80 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC---------hHHHhcCCEEEEE
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILL 369 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~---------~~i~~~~D~i~vL 369 (562)
+++++++||.-- +|+ .+++.|+.+++.|..||++.++.. ..+...+|.|.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 543 356677777777899999888533 2344456666444
No 477
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.37 E-value=8.4e-05 Score=74.27 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.0
Q ss_pred ccccccccCcccCCCChhHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHHCCcEEEEE
Q 008534 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL--LFLDEPTSGLDSTTA--------LRIVQMLQDIAEAGKTVVTT 351 (562)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IAraLl~~P~i--LlLDEPTsgLD~~~~--------~~i~~~L~~l~~~g~Tvii~ 351 (562)
...++.++.+.++ +|+| ||++|+++|+.+|++ +|+||+|+.||...+ ..+.+...++..+|+|.+.+
T Consensus 160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~ 236 (261)
T 2eyu_A 160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED 236 (261)
T ss_dssp HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence 3456666654444 7888 899999999999999 999999999998743 22444444445569988888
Q ss_pred ecCCC
Q 008534 352 IHQPS 356 (562)
Q Consensus 352 tH~~~ 356 (562)
.|+.+
T Consensus 237 a~r~~ 241 (261)
T 2eyu_A 237 AMEAS 241 (261)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88754
No 478
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.35 E-value=0.082 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 178 ~~i~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999884
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.34 E-value=0.07 Score=53.11 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999988643
No 480
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.065 Score=54.20 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCcEEEEEecCCC
Q 008534 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (562)
Q Consensus 313 ~P~iLlLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvii~tH~~~ 356 (562)
++.|+++|| ...|++.....+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776532 345666776654
No 481
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.96 E-value=0.085 Score=53.30 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
No 482
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.84 E-value=0.099 Score=54.08 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 008534 295 GVSGGERKRVCIGNEI---II--NPSLLFLDEPT 323 (562)
Q Consensus 295 ~LSGGqrqRv~IAraL---l~--~P~iLlLDEPT 323 (562)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 483
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.77 E-value=0.092 Score=51.58 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
.+..-+.|.||+|+|||||.+.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4455789999999999999999996
No 484
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.75 E-value=0.093 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 180 i~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..+..-+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3456678999999999999999999743
No 485
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.70 E-value=0.09 Score=51.36 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+||+||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 486
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.64 E-value=0.11 Score=49.54 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
|.+++|=|+-||||||+++.|+-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5689999999999999999999755
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.52 E-value=0.095 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.+|..+.|.||+|+|||||++.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999644
No 488
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.51 E-value=0.11 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998643
No 489
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.51 E-value=0.086 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~l 207 (562)
.++|+|.+|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.47 E-value=0.084 Score=56.08 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.43 E-value=0.091 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
...+.|.||+|+|||+|.+.|+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788899999999999999963
No 492
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.74 E-value=0.036 Score=51.64 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 008534 185 VLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G 205 (562)
.++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 689999999999999988875
No 493
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.36 E-value=0.11 Score=52.06 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999853
No 494
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.31 E-value=0.099 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4468899999999999999999643
No 495
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.24 E-value=0.068 Score=50.46 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 008534 185 VLALMGPSGSGKTTLLNL-LSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~-L~G~ 206 (562)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999998 6553
No 496
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.24 E-value=0.11 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=22.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 181 ~~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.+..-+.|.||+|+|||+|++.|+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35567899999999999999999963
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.16 E-value=0.1 Score=53.74 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~l 207 (562)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999999643
No 498
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.12 E-value=0.097 Score=55.16 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 008534 185 VLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 185 ~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.++|+|.+++|||||++.|+|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999985
No 499
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.12 E-value=0.12 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 008534 183 GEVLALMGPSGSGKTTLLNLLSG 205 (562)
Q Consensus 183 Ge~~alvGpsGsGKSTLl~~L~G 205 (562)
+.-+.|.||+|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
No 500
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.98 E-value=0.092 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 008534 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (562)
Q Consensus 182 ~Ge~~alvGpsGsGKSTLl~~L~G~ 206 (562)
.|=.++|+|++|+|||||++.|+|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4456999999999999999999984
Done!