BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008535
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 255/552 (46%), Gaps = 67/552 (12%)
Query: 24 DFLERAAHVYGD---ATSIIYGTV-RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
DFLERAA ++G + + G V R ++ + +Q +L L L + GD VA + N
Sbjct: 22 DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 81
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
+ +FAVP GAVL N RL +A IL E K++ D + +V+ L
Sbjct: 82 HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 141
Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP 199
H+ + P G L Y + L E DP
Sbjct: 142 ---------------TVQHF----VVMDEKAPEGYLAYEEAL------------GEEADP 170
Query: 200 ISV--------NYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLDMFR 249
+ V YT+G+TG PKGVVYSHR L+SLA + + + V L + MF
Sbjct: 171 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230
Query: 250 CNGWCCTWAMAAVGGINVC----IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
N WC +A VG V + S +FD VT G P + +A+ S
Sbjct: 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDG---EGVTFTAGVPTVWLALADYLES 287
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
++L+ +V+ G ++ + G +R YG+TE P +V+ + S
Sbjct: 288 TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTET-SPVVVQNFVKSHLESLS 346
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
+ E K + GL L++ ++ + VP DGK LGEV + + GY+ N +AT
Sbjct: 347 EEEKLTLKAKTGLPIPLVRLRVADEEG--RPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 426 EEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484
A +G++ TGD+AV + +GYV++KDR KD+I SG E ISS+++E L+ +PKV EAA
Sbjct: 405 RSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA 464
Query: 485 VVGKVDDQLKEVPVAFVKLKEGREASPEEL------VTFCGDELPSCMVPRAIFFEDIPV 538
VV + +E P+A V + G + +PEEL F +LP V F E+IP
Sbjct: 465 VVAIPHPKWQERPLAVV-VPRGEKPTPEELNEHLLKAGFAKWQLPDAYV----FAEEIPR 519
Query: 539 NSTGKVQKFVLR 550
S GK K LR
Sbjct: 520 TSAGKFLKRALR 531
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 148/524 (28%), Positives = 235/524 (44%), Gaps = 62/524 (11%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
VR ++ Q + + + A L L I++GD VA + PN L + GAV +NTR
Sbjct: 42 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
L + ++ IL +K++ + AP++ I P T
Sbjct: 102 LAAPEVSFILSDSGSKVVI-------------------YGAPSAPVIDAI-RAQADPPGT 141
Query: 164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC---DPISVNYTSGSTGDPKGVVYSHR 220
V + + SL + L AD +P EC D + + YTSG+TG PKGVV++H
Sbjct: 142 --VTDWIGADSL--AERLRSAAAD----EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 193
Query: 221 GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDS 280
+ + + S DVR L L MF A G + + A ++
Sbjct: 194 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 253
Query: 281 ILIHKVTHLCGQPRILNMI------ANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-AN 333
I+ +V P ILN + A A D I G P E L ++ A
Sbjct: 254 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYF-------ITGGAPMPEALIKIYAA 306
Query: 334 FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
+ Y +TE G + L E + K + V V+ +
Sbjct: 307 KNIEVVQGYALTESCGGGTL-----------LLSEDALRKAGSAGRATMFTDVAVRGDDG 355
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
+ + G+ GEV+ +++ ++ Y+ P+AT +AF NGW+ TGD+ + +GY+ +KDR
Sbjct: 356 V--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDR 411
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEE 513
KD+IISG E + E+E+V++ P V E AV+G D++ E+ A V + + E S ++
Sbjct: 412 LKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQ 470
Query: 514 LVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGKVNAT 556
+V +CG L +P+ + F E IP N TGK+ K VLR + +AT
Sbjct: 471 IVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 132/531 (24%), Positives = 244/531 (45%), Gaps = 62/531 (11%)
Query: 46 FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
+++ H I ++A+ +L +++ D+V + PN P A GA +A N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS 165
A +A + K+I + ++V+ ++ + D ++V I + +
Sbjct: 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQN--------DDGVVIVCIDDNESVP----- 195
Query: 166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDP---ISVNYTSGSTGDPKGVVYSHRGA 222
P G L + +L + E++ + E P +++ Y+SG+TG PKGV+ +H+G
Sbjct: 196 ----IPEGCLRFTELTQSTTEASEVID-SVEISPDDVVALPYSSGTTGLPKGVMLTHKG- 249
Query: 223 YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKII----F 278
+ S+AQ + D + ++ + D+ C + + A+ I +C V A I+ F
Sbjct: 250 LVTSVAQ--QVDGENPNLYFHSDDVILC--VLPMFHIYALNSIMLCGLRVGAAILIMPKF 305
Query: 279 DSILIHKVTHLCGQ------PRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA 332
+ L+ ++ C P I+ IA +S +++ L + +V +G P + LE
Sbjct: 306 EINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS-SIRVVKSGAAPLGKELEDAV 364
Query: 333 NFGF---NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK 389
N F + YGMTE GP + + +L E + G +++ ++K
Sbjct: 365 NAKFPNAKLGQGYGMTEA-GPVL---------AMSLGFAKEPFPVKSGACGTVVRNAEMK 414
Query: 390 QQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRN 443
+ P G +L GE+ R + +M GY NP AT E ++GW HTGD+ + +
Sbjct: 415 IVD-----PDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469
Query: 444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL 503
D + + DR K++I ++ E+EA+L+ +P + + AVV ++ EVPVAFV
Sbjct: 470 DDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529
Query: 504 KEGREASPEELVTFCGDELPSCMVPRAIFF-EDIPVNSTGKVQKFVLRGKV 553
+ E S +++ F ++ +FF E IP +GK+ + LR K+
Sbjct: 530 SKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKL 580
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 129/526 (24%), Positives = 234/526 (44%), Gaps = 60/526 (11%)
Query: 46 FSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLD 105
+++ ++AS L ++ I +GD++ P+ P GA+++A N
Sbjct: 50 YTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFST 109
Query: 106 SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKC-DKAPLLVTIPECDHYQPSTC 164
A LA + AK++ + E V++ C D AP C H+ T
Sbjct: 110 PAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAP-----DGCLHFSELTQ 164
Query: 165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL 224
+ N P + +D+ +++ Y+SG+TG PKGV+ +H+G +
Sbjct: 165 ADENEAPQVDISPDDV-------------------VALPYSSGTTGLPKGVMLTHKG-LI 204
Query: 225 NSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKI-------- 276
S+AQ + D + ++ + D+ C + + A+ I +C V A I
Sbjct: 205 TSVAQ--QVDGDNPNLYFHSEDVILC--VLPMFHIYALNSIMLCGLRVGAPILIMPKFEI 260
Query: 277 --IFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANF 334
+ I +KV+ P ++ IA + D++ L + ++ +G P + LE
Sbjct: 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS-SLRMIKSGGAPLGKELEDTVRA 319
Query: 335 GF---NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVK-- 389
F + YGMTE GP + + L E + G +++ ++K
Sbjct: 320 KFPQARLGQGYGMTEA-GPVL---------AMCLAFAKEPFDIKPGACGTVVRNAEMKIV 369
Query: 390 QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYV 448
T S+P + GE+ R + +M GY +P+AT + GW HTGD+ + D +
Sbjct: 370 DPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 449 QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE 508
+ DR K++I ++ E+EA+L+++P++ +AAVVG D+ EVPVAFV E +
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQ 487
Query: 509 ASPEELVTFCGDE-LPSCMVPRAIFFEDIPVNSTGKVQKFVLRGKV 553
A+ +E+ + + + + R F E IP +GK+ + L+ K+
Sbjct: 488 ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 125/537 (23%), Positives = 210/537 (39%), Gaps = 52/537 (9%)
Query: 20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
T D R A ++ D T+ + VR + R +LAS L + + GD VA ++ N
Sbjct: 6 FTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQN 65
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILS 139
+ +L AV + GA+L +N RL++ +A +L ++ + ++V L L
Sbjct: 66 CSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG 125
Query: 140 PNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH-ECD 198
K A GS + ++ +D P D
Sbjct: 126 GVKK-----------------------AYAIGDGSGPFAPFKDLA-SDTPFSAPEFGAAD 161
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258
+ +T+ G P+G + S + + + + + V L L +F G
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221
Query: 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVI 318
+ GG +V I HKVT + +L I + +A Q R V
Sbjct: 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVT--- 278
Query: 319 AGVLPTIEVLEQVANFGFNIRH--AYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHRE 376
L T E +E+ N +G +E G + ++ +S+
Sbjct: 279 --GLDTPETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAG------------ 324
Query: 377 GLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT 436
L + V V P + +GE++ R TV GY+ N AT+ AFRNGW+HT
Sbjct: 325 --RPLFWRTVAVVDAEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHT 379
Query: 437 GDLAVRNPDGYVQMKDR--RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
GD+ + DGY+ R K++I +G E + EVE L +P + +A V+G D Q
Sbjct: 380 GDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWS 439
Query: 495 EVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFEDIPVNSTGKVQKFVLR 550
E A K G + + L F + P+ +F E +P ++ G + + ++
Sbjct: 440 EAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/544 (24%), Positives = 229/544 (42%), Gaps = 78/544 (14%)
Query: 23 IDF-LERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP 81
+DF L + A G +I G ++++ + LA L + SR + + +I
Sbjct: 3 LDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSR--VGLYIDNSIQ 60
Query: 82 ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF----VDYQFVEVVQNALDI 137
++ +H A +A ++ +NTRL + + +R ++ ++IF ++ + ++V + DI
Sbjct: 61 SIILIH-ACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDI 118
Query: 138 LSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
LL + + V PS L+ + L+
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLD--------------- 163
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
D S+ +TSG+TG K V + R Y +++ C +L R W
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIG----CKE--------SLGFDRDTNWLSVL 211
Query: 258 AMAAVGGINVCIRTV------------SAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
+ + G++V +R V +A+ I I ++TH+ P+ LN +
Sbjct: 212 PIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH 271
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
+ LQ+ I++ G + ++E + I +++GMTE S L
Sbjct: 272 EPYNLQK---ILLGGAKLSATMIETALQYNLPIYNSFGMTETC-------------SQFL 315
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
EM R + VDVK +N K +G GE+M + VM GY P
Sbjct: 316 TATPEMLHARPDTVGMPSANVDVKIKNPNK----EGH--GELMIKGANVMNGYLY-PTDL 368
Query: 426 EEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485
F NG+++TGD+A + +GYV + DRRKD+IISG E I ++E V P + +A
Sbjct: 369 TGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVC 428
Query: 486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFEDI---PVNSTG 542
VG DD +VP + + S +L+ + L VP+ FE + P STG
Sbjct: 429 VGHPDDTWGQVPKLY--FVSESDISKAQLIAYLSKHLAKYKVPK--HFEKVDTLPYTSTG 484
Query: 543 KVQK 546
K+Q+
Sbjct: 485 KLQR 488
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 164/368 (44%), Gaps = 33/368 (8%)
Query: 196 ECDPISVNYTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFLWTLDMFRCNGW 253
+ DP V YTSG+TG PKG V R L++LA + D V + L +F +G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGED--VLVQGLPLFHVHGL 211
Query: 254 CCT--WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQ 311
+ G + R + + L T L G P + + IA +D +
Sbjct: 212 VLGILGPLRRGGSVRHLGRFSTEGAARE--LNDGATMLFGVPTMYHRIAETLPADPELAK 269
Query: 312 R----KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDH 367
++++ + LP + A G + YGMTE L VR +GE
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRA---DGEP----- 321
Query: 368 EHEMTKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425
R G + + GV+++ +++ DG+++GE+ R + Y P AT
Sbjct: 322 -------RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 426 EEAF-RNGWYHTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEA 483
AF +G++ TGD+AVR+PDGYV++ R+ D+I SG I + E+E LL +P+V EA
Sbjct: 375 AAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREA 434
Query: 484 AVVGKVDDQLKEVPVAF-VKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNST 541
AV G+ D L E VA+ V + L L PR + + D +P N
Sbjct: 435 AVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDM 494
Query: 542 GKVQKFVL 549
GK+ K L
Sbjct: 495 GKIMKRAL 502
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
V ++ + ++ ++LA A+ + ++ + + N L F +P+ GA+ +
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 103
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
N + L + + + ++FV + ++ + N L K +++ + D+
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 158
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
+Q V ++ P G +Y DF + + + +SGSTG PKGV
Sbjct: 159 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 209
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
HR A + RD P+F L + G T G
Sbjct: 210 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
V + ++ S+ +K+ P + + A ++ D+ L I G + E
Sbjct: 263 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
V E VA F IR YG+TE ++ PEG+ + G ++
Sbjct: 323 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 367
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
+ K + GKTLG E+ R +M GY NP+AT ++GW H+GD
Sbjct: 368 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 422
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
+A + D + + DR K +I ++ E+E++LL +P + +A V G DD E+P
Sbjct: 423 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 482
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
A V L+ G+ + +E+V + ++ + R +F +++P TGK+ +R
Sbjct: 483 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 210/504 (41%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA +++ ++ A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L + ++ G+ A A+ G V + + +VT L P L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + +AYG TE + +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D+IISG E I E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
V ++ + ++ ++LA A+ + ++ + + N L F +P+ GA+ +
Sbjct: 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 103
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
N + L + + + ++FV + ++ + N L K +++ + D+
Sbjct: 104 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 158
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
+Q V ++ P G +Y DF + + + +SGSTG PKGV
Sbjct: 159 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 209
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
HR A + RD P+F L + G T G
Sbjct: 210 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 262
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
V + ++ S+ +K+ P + + A ++ D+ L I G + E
Sbjct: 263 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
V E VA F IR YG+TE ++ PEG+ + G ++
Sbjct: 323 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 367
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
+ K + GKTLG E+ R +M GY NP+AT ++GW H+GD
Sbjct: 368 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 422
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
+A + D + + DR K +I ++ E+E++LL +P + +A V G DD E+P
Sbjct: 423 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 482
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
A V L+ G+ + +E+V + ++ + R +F +++P TGK+ +R
Sbjct: 483 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 141/565 (24%), Positives = 233/565 (41%), Gaps = 55/565 (9%)
Query: 3 MECLGGRLCSASANNVPLTPIDF-----LERAAHVYGDATSIIYGTVRFSWRQTHQICLK 57
ME L + + A V P F L R T+ I T ++ + + +
Sbjct: 1 MEALLEKAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARR 60
Query: 58 LASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE 117
ASAL L + + + + + AL AG V NT L A +L
Sbjct: 61 FASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSH 120
Query: 118 AKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY 177
A+ + V+ V AL+ S H D L+V+ P +P + +
Sbjct: 121 ARAVIASGALVQNVTQALE--SAEH--DGCQLIVSQPR--ESEPRLAPL----------F 164
Query: 178 NDLLEMGKADFEMMQPNHECDPISV-NYTSGSTGDPKGVVYSHRGAYLNS-LAQISRCDV 235
+L++ + CD I+ Y+SGSTG PKG V++H Y + L +
Sbjct: 165 EELIDAAAPAAKAAATG--CDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 236 RDMPVFLWTLDMFRCNGWC--CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQP 293
+ V +F G T+ ++ + +A IF ++ H+ T G P
Sbjct: 223 AENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP 282
Query: 294 RIL-NMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQ-VANFGFNIRHAYGMTEVLGPA 351
+ NM+ + + + + ++ LP E+ E+ A+FG I G TE+L
Sbjct: 283 TLYANMLVSPNLPARADVAIRICTSAGEALPR-EIGERFTAHFGCEILDGIGSTEMLHIF 341
Query: 352 IVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA 411
+ + + A+++ G + G +++ ++ DG+ +G++ +
Sbjct: 342 LSNR------AGAVEY---------GTTGRPVPGYEIELRDEAGHAVPDGE-VGDLYIKG 385
Query: 412 NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
+ + Y+ N + + F W +GD R P+G R D++ + +S +EVE
Sbjct: 386 PSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVE 445
Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP-----EELVTFCGDELPSCM 526
VL+ + VLEAAVVG VD AFV LK RE +P EEL F D L
Sbjct: 446 MVLVQHDAVLEAAVVG-VDHGGLVKTRAFVVLK--REFAPSEILAEELKAFVKDRLAPHK 502
Query: 527 VPRAI-FFEDIPVNSTGKVQKFVLR 550
PR I F +D+P +TGK+Q+F LR
Sbjct: 503 YPRDIVFVDDLPKTATGKIQRFKLR 527
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 121/534 (22%), Positives = 220/534 (41%), Gaps = 73/534 (13%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
V ++ + ++ ++LA A+ + ++ + + N L F +P+ GA+ +
Sbjct: 54 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSEN-----SLQFFMPVLGALFIGVAVA 108
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
N + L + + + ++FV + ++ + N L K +++ + D+
Sbjct: 109 PANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 163
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
+Q V ++ P G +Y DF + + + +SGSTG PKGV
Sbjct: 164 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 214
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
HR A + RD P+F L + G T G
Sbjct: 215 LPHR------TACVRFSHARD-PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRV 267
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
V + ++ S+ +K+ P + + A ++ D+ L I G + E
Sbjct: 268 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 327
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
V E VA F IR YG+TE ++ PEG+ + G ++
Sbjct: 328 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPEGDD------------KPGAVGKVVP 372
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
+ K + GKTLG E+ R +M GY NP+AT ++GW H+GD
Sbjct: 373 FFEAKVVDL-----DTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
+A + D + + DR K +I ++ E+E++LL +P + +A V G DD E+P
Sbjct: 428 IAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 487
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
A V L+ G+ + +E+V + ++ + R +F +++P TGK+ +R
Sbjct: 488 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA +++ ++ A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L + ++ G+ A A+ G V + + +VT L P L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + + YG TE + +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D+IISG E I E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA +++ ++ A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L + ++ G+ A A+ G V I + +VT L P L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + + YG TE + +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D+IISG E I E+E V
Sbjct: 361 AFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA +++ ++ A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L + ++ G+ A A+ G V + + +VT L P L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + + YG TE + +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D+IISG E I E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 209/504 (41%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILR--QLEAKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA +++ ++ A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L + ++ G+ A A+ G V + + +VT L P L+ +
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + + YG TE + +RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQ 317
Query: 356 WKPEGE-SSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D+IISG E I E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 131/554 (23%), Positives = 223/554 (40%), Gaps = 75/554 (13%)
Query: 26 LERAAHVYGD-ATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84
++R A V G A + + V ++ + ++ +LA + + + +A + N
Sbjct: 64 MKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN----- 118
Query: 85 KLHFAVPMAGAVL-----SALNTRLDSATLASILRQLEAKIIFVD---YQFVEVVQNALD 136
L F +P+ GA+ + N + L + L + I+F Q + VQ L
Sbjct: 119 SLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLP 178
Query: 137 ILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHE 196
I+ K +L + + Q + ++ P+G +Y D+ + E
Sbjct: 179 IIQ------KIVILDSREDYMGKQSMYSFIESHLPAGFNEY---------DYIPDSFDRE 223
Query: 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLD 246
+ +SGSTG PKGV +H+ N + S C RD PVF L +
Sbjct: 224 TATALIMNSSGSTGLPKGVELTHK----NICVRFSHC--RD-PVFGNQIIPDTAILTVIP 276
Query: 247 MFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASD 306
G T G V + ++ S+ +K+ P + + A ++ D
Sbjct: 277 FHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVD 336
Query: 307 QNQLQRKVIIVIAGVLPTIEVLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSA 364
+ L I G EV E VA F IR YG+TE I+ P G
Sbjct: 337 KYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIII---TPRGRDD- 392
Query: 365 LDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYF 419
+ G ++ K + GKTLG E+ + +M GY
Sbjct: 393 ----------KPGACGKVVPFFSAKIVDL-----DTGKTLGVNQRGELCVKGPMIMKGYV 437
Query: 420 KNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478
NP+AT ++GW H+GD+A + DGY + DR K +I + E+E++LL +P
Sbjct: 438 NNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHP 497
Query: 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDI 536
+ +A V G D E+P A V L+EG+ + +E++ + ++ + R F +++
Sbjct: 498 FIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEV 557
Query: 537 PVNSTGKVQKFVLR 550
P TGK+ +R
Sbjct: 558 PKGLTGKIDARKIR 571
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 121/534 (22%), Positives = 223/534 (41%), Gaps = 73/534 (13%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--- 100
V ++ + ++ ++LA A+ + ++ + + N L F +P+ GA+ +
Sbjct: 54 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSEN-----SLQFFMPVLGALFIGVAVA 108
Query: 101 --NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDH 158
N + L + + + ++FV + ++ + N L K +++ + D+
Sbjct: 109 PANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQK-----IIIMDSKTDY 163
Query: 159 --YQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVV 216
+Q V ++ P G +Y DF + + + +SGSTG PKGV
Sbjct: 164 QGFQSMYTFVTSHLPPGFNEY---------DFVPESFDRDKTIALIMNSSGSTGLPKGVA 214
Query: 217 YSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWCCTWAMAAVGGIN 266
HR +LA + RD P+F L + G T G
Sbjct: 215 LPHR-----ALA-VRFSHARD-PIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRV 267
Query: 267 VCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326
V + ++ S+ +K+ P + + +A ++ D+ L I G + E
Sbjct: 268 VLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKE 327
Query: 327 VLEQVAN-FGF-NIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQ 384
V E VA F IR YG+TE ++ P+G+ + G ++
Sbjct: 328 VGEAVAKRFHLPGIRQGYGLTETTSAILI---TPKGDD------------KPGAVGKVVP 372
Query: 385 GVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGD 438
+ K + GKTLG E+ R +M GY NP+AT ++GW H+GD
Sbjct: 373 FFEAKVVDL-----DTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498
+A + D + + DR K +I ++ E+E++LL +P + +A V G DD E+P
Sbjct: 428 IAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 487
Query: 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQKFVLR 550
A V L+ G+ + +E+V + ++ + R +F +++P TGK+ +R
Sbjct: 488 AVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 132/544 (24%), Positives = 225/544 (41%), Gaps = 48/544 (8%)
Query: 16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAA 75
++PLT D L R H D+ ++I G + S+R+ +Q LA +L + I G+
Sbjct: 25 QDLPLT--DILTR--HAASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALV 80
Query: 76 MAPNIPALYKLHFAVPMAG-AVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134
N+ LY FA+ G A + AL + S L + Q+E ++ D Q + +
Sbjct: 81 QLGNVAELYITFFALLKLGVAPVLALFSHQRS-ELNAYASQIEPALLIADRQ--HALFSG 137
Query: 135 LDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPN 194
D L+ VT +H + N+ SG + D + DF P+
Sbjct: 138 DDFLN---------TFVT----EHSSIRVVQLLND--SGEHNLQDAINHPAEDF-TATPS 181
Query: 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC 254
+ + G+TG PK + +H Y + + C +L +
Sbjct: 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMS 241
Query: 255 CTWAMAA--VGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANA--SASDQNQL 310
++ GG V SA + F I H+V P +++ A + QL
Sbjct: 242 SPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQL 301
Query: 311 QRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEH 369
++ + G + + ++ A G ++ +GM E L + LD
Sbjct: 302 ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV-----------NYTRLDDSA 350
Query: 370 EMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
E H +G V V + P +G +M R GY+K+P+ AF
Sbjct: 351 EKIIHTQGYPMCPDDEVWVAD---AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAF 407
Query: 430 R-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
NG+Y +GDL +P+GY+ ++ R KD I G E I++ E+E +LL +P V+ AA+V
Sbjct: 408 DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQK 546
D+ + E A++ +KE A ++ F ++ + +P R + +P+ + GKV K
Sbjct: 468 EDELMGEKSCAYLVVKEPLRAV--QVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDK 525
Query: 547 FVLR 550
LR
Sbjct: 526 KQLR 529
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 134/504 (26%), Positives = 205/504 (40%), Gaps = 77/504 (15%)
Query: 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE--AKIIFVDYQFVEV 130
VA +APN + A+ GAV + LN RL SA LA ++++ E A +I V Q +
Sbjct: 57 VAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADA 116
Query: 131 VQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGS----LDYNDLLEMGKA 186
+ F SGS + DL+ G+
Sbjct: 117 I--------------------------------------FQSGSGARIIFLGDLVRDGEP 138
Query: 187 ---DFEMMQPNHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--MPV 240
+ P E P + YTSG+TG PK + R A L ++ +R V
Sbjct: 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNV 198
Query: 241 FLWTLDMFRCNGWCCTWAMA-AVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMI 299
L ++ G+ A A+ G V + + +VT L P L+ +
Sbjct: 199 VLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDAL 258
Query: 300 ANASASDQNQLQRKVI--IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQ 355
A A+A + L+ + + AG VLE V G + + YG TE RQ
Sbjct: 259 AAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQ 317
Query: 356 WKPEGESS-ALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA-NT 413
K E + E + + G++ ++ G + GE++ A ++
Sbjct: 318 PKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEE-----------------GELIVAASDS 360
Query: 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAV 473
+GY P+AT E ++GWY T D+AV P+G V++ R D IISG E I E+E V
Sbjct: 361 AFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERV 420
Query: 474 LLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFC-GDELPSCMVPRAIF 532
L + P V E V+G D + + A V + G S + L TFC EL P+ F
Sbjct: 421 LGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYF 480
Query: 533 FED-IPVNSTGKVQKFVLRGKVNA 555
D +P N+ KV + L +V++
Sbjct: 481 ILDQLPKNALNKVLRRQLVQQVSS 504
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 137/554 (24%), Positives = 232/554 (41%), Gaps = 55/554 (9%)
Query: 19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78
PLT I L + + +II G + S+ + ++ LA+ LA+ + +GD P
Sbjct: 31 PLTRI--LTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 79 NIPALYKLHFAVPMAGAV-LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDI 137
N+ Y + FA+ AG V L+AL + L + ++Q++ K++ Q EV N
Sbjct: 89 NVAEFYIVFFALLKAGVVVLNALYSH-RQYELNAFIKQIQPKLLIGSRQH-EVFSNN-QF 145
Query: 138 LSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC 197
+ H + +P ++ + +H A +F G LD+ + DF P E
Sbjct: 146 IDSLHDVNLSPEIILM--LNHQ-------ATDF--GLLDWIETPAETFVDFSST-PADEV 193
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
+ + GSTG PK + +H + A C + L L
Sbjct: 194 AFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPG 251
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
A+ + GG V F I H+V P + M +A ++Q+Q +
Sbjct: 252 ALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL 311
Query: 316 IVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM--- 371
+ + G + QV ++ +GM E L + LD E
Sbjct: 312 LQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV-----------NYTRLDDSDEQIFT 360
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-R 430
T+ R ++ I+ VD + VP +G+ +G + R GY+++P+ + F
Sbjct: 361 TQGRPISSDDEIKIVD----EQYREVP-EGE-IGMLATRGPYTFCGYYQSPEHNSQVFDE 414
Query: 431 NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD 490
+ +Y++GDL R PDG +++ R KD I G E I+S E+E ++L +P+V+ AA+V VD
Sbjct: 415 DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474
Query: 491 DQLKEVPVAFVKLKEGREASPEELVTFCGDEL-----PSCMVPRAI-FFEDIPVNSTGKV 544
+Q E AF+ + +PE L +P I E +P+ + GKV
Sbjct: 475 EQFGEKSCAFIVSR-----NPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKV 529
Query: 545 QKFVLRGKVNATAV 558
K LR +N +
Sbjct: 530 DKKQLRSILNTSTT 543
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 132/563 (23%), Positives = 225/563 (39%), Gaps = 80/563 (14%)
Query: 24 DFLERAAHVYGDATSIIYGTVRF--------SWRQTHQICLKLASALAQLKISRGDIVAA 75
D ++ AA +G+ T+II +F ++ + ++ KLAS +++ + +G+ V
Sbjct: 23 DRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGV 82
Query: 76 MAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL 135
PN +A+ A +N S L IL EA + V E + L
Sbjct: 83 CIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVL 142
Query: 136 DILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNH 195
+ K + V E + +++ + G DFE ++ N
Sbjct: 143 E------KTGVERVFVVGGEVN------------------SLSEVXDSGSEDFENVKVNP 178
Query: 196 ECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255
E D + YT G+TG PKGV +H N+L + + F +
Sbjct: 179 EEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGL 238
Query: 256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
VG V + + + ++I +K T P LN++ N S +
Sbjct: 239 VNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 316 IVIA-GVLPT----IEVLEQVANFGFN---IRH--AYGMTEVLGPAIVRQWKPEGESSAL 365
V A G P +E L ++A N +RH +G TE P +
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEAC-PXVT------------ 345
Query: 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG-----EVMFRANTVMLGYFK 420
T L+ QGV DG+ LG E++ R + GY+K
Sbjct: 346 ------TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWK 399
Query: 421 NPKATEEAFRNGWY--------HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA 472
K +E + WY TGD+ + +G++ +DR K++I I+ E+EA
Sbjct: 400 REKENQECW---WYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEA 456
Query: 473 VLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLK-EGR-EASPEELVTFCGDELPSCMVPRA 530
+L + V + AV+GK D++ EVP AF+ LK E R + E+++ + + + R
Sbjct: 457 LLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVRE 516
Query: 531 I-FFEDIPVNSTGKVQKFVLRGK 552
+ F E++P ++GK+ + +LR K
Sbjct: 517 VEFVEELPRTASGKLLRRLLREK 539
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 202/508 (39%), Gaps = 66/508 (12%)
Query: 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126
+ RGD VA + P +P + + AG + ++ S + L+ +AK I +
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA 186
++ V D ++ + LLV+ CD G L++ LL
Sbjct: 156 VIQEV----DTVASECPSLRIKLLVSEKSCD---------------GWLNFKKLLNEAST 196
Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
++ + + ++ +TSG++G PK +S+ L + ++ + +WT+
Sbjct: 197 THHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTIS 254
Query: 247 MFRCNGW----CCT----WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
GW C+ WA+ A +++ + +I ++ + + + G P + M
Sbjct: 255 ---DTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRM 310
Query: 299 IANASASDQN--QLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQ 355
+ S LQ + V +LP E LE A G +IR +YG TE +V +
Sbjct: 311 LLQQDLSSYKFPHLQN-CVTVGESLLP--ETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 356 WKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV- 414
K + G DV+ + +V G T G++ R +
Sbjct: 368 ---------------TMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIR 411
Query: 415 ----MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEV 470
GY NP T R ++ GD +++ DGY Q R DII S I EV
Sbjct: 412 PIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471
Query: 471 EAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL-KEGREASPEELVTFCGDELPSCMV-- 527
E L+ +P V+E AV+ D EV AFV L + PE+L + S
Sbjct: 472 ENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531
Query: 528 --PRAI-FFEDIPVNSTGKVQKFVLRGK 552
PR I F ++P TGK+Q+ LR K
Sbjct: 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 122/508 (24%), Positives = 202/508 (39%), Gaps = 66/508 (12%)
Query: 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126
+ RGD VA + P +P + + AG + ++ S + L+ +AK I +
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDE 155
Query: 127 FVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKA 186
++ V D ++ + LLV+ CD G L++ LL
Sbjct: 156 VIQEV----DTVASECPSLRIKLLVSEKSCD---------------GWLNFKKLLNEAST 196
Query: 187 DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLD 246
++ + + ++ +TSG++G PK +S+ L + ++ + +WT+
Sbjct: 197 THHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTIS 254
Query: 247 MFRCNGW----CCT----WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM 298
GW C+ WA+ A +++ + +I ++ + + + G P + M
Sbjct: 255 ---DTGWILNILCSLMEPWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRM 310
Query: 299 IANASASDQN--QLQRKVIIVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQ 355
+ S LQ + V +LP E LE A G +IR +YG TE +V +
Sbjct: 311 LLQQDLSSYKFPHLQN-CVTVGESLLP--ETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 356 WKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTV- 414
K + G DV+ + +V G T G++ R +
Sbjct: 368 ---------------TMKIKPGYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIR 411
Query: 415 ----MLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEV 470
GY NP T R ++ GD +++ DGY Q R DII S I EV
Sbjct: 412 PIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEV 471
Query: 471 EAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKL-KEGREASPEELVTFCGDELPSCMV-- 527
E L+ +P V+E AV+ D EV AFV L + PE+L + S
Sbjct: 472 ENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531
Query: 528 --PRAI-FFEDIPVNSTGKVQKFVLRGK 552
PR I F ++P TGK+Q+ LR K
Sbjct: 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDK 559
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/419 (25%), Positives = 171/419 (40%), Gaps = 60/419 (14%)
Query: 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR 103
VR ++ Q + + + A L L I++GD VA + PN L + GAV +NTR
Sbjct: 28 VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 104 LDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPST 163
L + ++ IL +K++ + AP++ I P T
Sbjct: 88 LAAPEVSFILSDSGSKVVI-------------------YGAPSAPVIDAI-RAQADPPGT 127
Query: 164 CSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC---DPISVNYTSGSTGDPKGVVYSHR 220
V + + SL + L AD +P EC D + + YTSG+TG PKGVV++H
Sbjct: 128 --VTDWIGADSL--AERLRSAAAD----EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHE 179
Query: 221 GAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDS 280
+ + + S DVR L L MF A G + + A ++
Sbjct: 180 SVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL 239
Query: 281 ILIHKVTHLCGQPRILNMI------ANASASDQNQLQRKVIIVIAGVLPTIEVLEQV-AN 333
I+ +V P ILN + A A D I G P E L ++ A
Sbjct: 240 IVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYF-------ITGGAPMPEALIKIYAA 292
Query: 334 FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393
+ Y +TE G + L E + K + V V+ +
Sbjct: 293 KNIEVVQGYALTESCGGGTL-----------LLSEDALRKAGSAGRATMFTDVAVRGDDG 341
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKD 452
+ + G+ GEV+ +++ ++ Y+ P+AT +AF NGW+ TGD+ + +GY+ +KD
Sbjct: 342 V--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 138/545 (25%), Positives = 221/545 (40%), Gaps = 57/545 (10%)
Query: 24 DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
D L A YGD +I G +S+R+ +LA+ +L I + D V PNI
Sbjct: 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 84 YKLHFAVPMAGA--VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
+++ FA+ GA V + + R T + A II Y + A + S
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS-- 146
Query: 142 HKCDKAPLLVTI---PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
K P L I E + + P + L E+ +D +Q
Sbjct: 147 ----KLPTLKNIIVAGEAEEFLP--------LEDLHTEPVKLPEVKSSDVAFLQ------ 188
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
+ GSTG K + +H Y+ SL + + C + V+L L M
Sbjct: 189 -----LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
+ + GG V + S F I KVT P + + +A++S ++ L +
Sbjct: 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQV 302
Query: 316 IVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
+ + G + E +V A FG ++ +GM E L + LD E+ +
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV-----------NYTRLDDPEEIIVN 351
Query: 375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGW 433
+G V + P G+T G ++ R + GY+K + +F +G+
Sbjct: 352 TQGKPMSPYDESRVWDDHDRDVKP--GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
Y TGD+ DGY+ ++ R KD I G E +++ EVE LL++P V +AA+V D L
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468
Query: 494 KEVPVAFVKLKEGREASPE--ELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
E F+ R+ +P+ EL F + L + +P R F E P GKV K L
Sbjct: 469 GERSCVFII---PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
Query: 550 RGKVN 554
R ++
Sbjct: 526 REAIS 530
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 139/581 (23%), Positives = 221/581 (38%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 138/581 (23%), Positives = 220/581 (37%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +GK+ + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 158/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
+SGSTG PKGV +H N + + S RD P++ L + G
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
T G V + + ++ +K T++ P + ++ + ++ L V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
I G + EV E VA FN +R YG+TE I+ PEG+
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
+ G + ++ K +T KS+ + + GEV + +M GY NP+AT+E
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
GW HTGD+ + + + + DR K +I + E+E+VLL +P + +A V G
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
D E+P A V L+ G+ + +E++ + ++ + R F +++P TGK+
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
+R
Sbjct: 535 RAIR 538
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 138/581 (23%), Positives = 220/581 (37%), Gaps = 102/581 (17%)
Query: 26 LERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPN 79
L+R GD T+II+ + S+R+ H+ + A+ L L I +GD+VA P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE------VVQN 133
+P A GAV S + +A + ++++ + V + +N
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 134 ALDIL-SPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQ 192
D L +PN VT E T S + L + DL+E + +
Sbjct: 202 VDDALKNPN---------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEA 252
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
N E DP+ + YTSGSTG PKGV+++ G YL V F + D +
Sbjct: 253 MNAE-DPLFILYTSGSTGKPKGVLHT-TGGYL----------VYAATTFKYVFDYHPGDI 300
Query: 253 WCCTWAMAAVGGINVCIRTVSA----KIIFDSIL-------------IHKVTHLCGQPRI 295
+ CT + V G + + A ++F+ + H+V L P
Sbjct: 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTA 360
Query: 296 LNMIANASASDQNQLQRKVIIVIAGV--------------------LPTIEVLEQVANFG 335
+ + R + ++ V P ++ Q G
Sbjct: 361 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 420
Query: 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSAL-DHE-HEMTKHREGLNNLLIQGVDVKQQNT 393
F I G E+ + R + G AL D+E H EG NL+I
Sbjct: 421 FMITPLPGAIELKAGSATRPFF--GVQPALVDNEGHPQEGATEG--NLVI---------- 466
Query: 394 MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDR 453
S P +TL R FKN Y +GD A R+ DGY + R
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNM-----------YFSGDGARRDEDGYYWITGR 515
Query: 454 RKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE- 512
D++ + + E+E+ L+++PK+ EAAVVG + A+V L G E SPE
Sbjct: 516 VDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPEL 575
Query: 513 --ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLR 550
E+ + E+ P + + D +P +G + + +LR
Sbjct: 576 YAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 136/545 (24%), Positives = 218/545 (40%), Gaps = 57/545 (10%)
Query: 24 DFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83
D L A YGD +I G +S+R+ +LA+ +L I + D V PNI
Sbjct: 29 DLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEF 88
Query: 84 YKLHFAVPMAGA--VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPN 141
+++ FA+ GA V + + R T + A II Y + A + S
Sbjct: 89 FEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS-- 146
Query: 142 HKCDKAPLLVTI---PECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECD 198
K P L I E + + P + L E+ +D +Q
Sbjct: 147 ----KLPTLKNIIVAGEAEEFLP--------LEDLHTEPVKLPEVKSSDVAFLQ------ 188
Query: 199 PISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFRCNGWCCTW 257
+ GSTG K + +H Y+ SL + + C + V+L L
Sbjct: 189 -----LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPG 242
Query: 258 AMAAV--GGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
+ + GG V + S F I KVT P + + +A++S ++ L +
Sbjct: 243 VLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQV 302
Query: 316 IVIAGVLPTIEVLEQV-ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
+ + G + E +V A FG ++ +G E L + LD E+ +
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGLV-----------NYTRLDDPEEIIVN 351
Query: 375 REGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGW 433
+G V + P G+T G ++ R + GY+K + +F +G+
Sbjct: 352 TQGKPXSPYDESRVWDDHDRDVKP--GET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 434 YHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQL 493
Y TGD+ DGY+ ++ R KD I G E +++ EVE LL++P V +AA V D L
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFL 468
Query: 494 KEVPVAFVKLKEGREASPE--ELVTFCGDE-LPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
E F+ R+ +P+ EL F + L + +P R F E P GKV K L
Sbjct: 469 GERSCVFII---PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
Query: 550 RGKVN 554
R ++
Sbjct: 526 REAIS 530
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
+SGSTG PKGV +H N + + S RD P++ L + G
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
T G V + + ++ +K T + P + ++ + ++ L V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
I G + EV E VA FN +R YG+TE I+ PEG+
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
+ G + ++ K +T KS+ + + GEV + +M GY NP+AT+E
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
GW HTGD+ + + + + DR K +I + E+E+VLL +P + +A V G
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
D E+P A V L+ G+ + +E++ + ++ + R F +++P TGK+
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
+R
Sbjct: 535 RAIR 538
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 157/364 (43%), Gaps = 43/364 (11%)
Query: 205 TSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVF----------LWTLDMFRCNGWC 254
+SGSTG PKGV +H N + + S RD P++ L + G
Sbjct: 200 SSGSTGLPKGVQLTHE----NIVTRFSHA--RD-PIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKV 314
T G V + + ++ +K T + P + ++ + ++ L V
Sbjct: 253 TTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLV 312
Query: 315 IIVIAGVLPTIEVLEQVANFGFN---IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM 371
I G + EV E VA FN +R YG+TE I+ PEG+
Sbjct: 313 EIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTETTSAIII---TPEGDD--------- 359
Query: 372 TKHREGLNNLLIQGVDVK--QQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF 429
+ G + ++ K +T KS+ + + GEV + +M GY NP+AT+E
Sbjct: 360 ---KPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELI 414
Query: 430 -RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488
GW HTGD+ + + + + DR K +I + E+E+VLL +P + +A V G
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGV 474
Query: 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRA--IFFEDIPVNSTGKVQK 546
D E+P A V L+ G+ + +E++ + ++ + R F +++P TGK+
Sbjct: 475 PDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDG 534
Query: 547 FVLR 550
+R
Sbjct: 535 RAIR 538
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 149/364 (40%), Gaps = 32/364 (8%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
D ++ YTSG+TG G + SH NSL + V + L ++ +G + +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
G + + I D L+ + T L G P + S + + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
I+G P + E A G + YGMTE + ++ +
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
R G + GV + + +G + V GY++ P+ T FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
++ TGDL + GYV + R D++I+G + E+E+ + + P V+E+AV+G
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASP-----EELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQK 546
E AFV L RE +P EEL F D L +P IF +D+P N+ G VQ
Sbjct: 437 FGEGVTAFVVLX--REFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQX 494
Query: 547 FVLR 550
VLR
Sbjct: 495 NVLR 498
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 190/500 (38%), Gaps = 50/500 (10%)
Query: 57 KLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL 116
++A+ L + GD VAA L+ A AG V LNT L +
Sbjct: 40 RVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDA 99
Query: 117 EAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176
E KI+ D P+ + A + + +V P G
Sbjct: 100 EPKIVVCD---------------PSKRDGIAAIAAKV---------GATVETLGPDGRGS 135
Query: 177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVR 236
D F + + D ++ YTSG+TG KG SH NSL +
Sbjct: 136 LTDAAAGASEAFATIDRGAD-DLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFT 194
Query: 237 DMPVFLWTLDMFRCNG-WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRI 295
V + L ++ +G + + G + + I D L + T L G P
Sbjct: 195 PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTF 252
Query: 296 LN-MIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVR 354
++ + + + ++ I + L E A G + YG TE
Sbjct: 253 YTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTET------- 305
Query: 355 QWKPEGESSALDHEHEMTKHREGLNNLLIQGVD--VKQQNTMKSVPHDGKTLGEVMFRAN 412
S+ D + G + GV V T K +P +G + +
Sbjct: 306 ---NXNTSNPYDGDRV-----PGAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGP 355
Query: 413 TVMLGYFKNPKATEEAFRN-GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVE 471
V GY++ P+ T+ FR+ G++ TGDL + GYV + R KD++I+G + E+E
Sbjct: 356 NVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIE 415
Query: 472 AVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RA 530
+ + + P V+E+AV+G E A V +G +++ +L P +
Sbjct: 416 SEIDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKV 475
Query: 531 IFFEDIPVNSTGKVQKFVLR 550
IF +D+P N+ GKVQK VLR
Sbjct: 476 IFVDDLPRNTXGKVQKNVLR 495
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 206/539 (38%), Gaps = 69/539 (12%)
Query: 53 QICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASI 112
++C + + +GD VA P +P A+ GA+ S + S +L
Sbjct: 122 EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDR 181
Query: 113 LRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHY----QPSTCSVAN 168
+ ++K++ + ++ D A L P H + + SVA
Sbjct: 182 INDGDSKVVIT----TDESNRGGKVIETKRIVDDA--LRETPGVRHVLVYRKTNNPSVAF 235
Query: 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLA 228
+ P LD+ + K + + E DP+ + YTSGSTG PKGV +S G L +L
Sbjct: 236 HAPR-DLDWATEKKKYKTYYPCTPVDSE-DPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 293
Query: 229 QISRC-DVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV---------SAKIIF 278
+ D VF D+ GW G + T+ + +
Sbjct: 294 TMRYTFDTHQEDVFFTAGDI----GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 349
Query: 279 DSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTI--EVLEQVANFGF 336
D I HKVT P L ++ A S K + + V I EV E +
Sbjct: 350 DIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE--- 406
Query: 337 NIRHAYGMTEVLGPAIVRQWKPEGESSALDH-EHEMTKHREGLNNLLIQGVDV------- 388
G E+ P + W+ E S + +T + G + G+D
Sbjct: 407 ----KIGKNEI--PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNT 460
Query: 389 -KQQNT-----MKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVR 442
++ NT + +V + +++ + L + NP G+Y TGD A +
Sbjct: 461 GEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP-------GYYFTGDGAAK 513
Query: 443 NPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVK 502
+ DGY+ + R D++ +S+ E+EA ++ +P V E AVVG DD + AFV
Sbjct: 514 DKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 573
Query: 503 LKEGRE---ASPEEL--------VTFCGDELPSCMVPRAIFFEDIPVNSTGKVQKFVLR 550
LK A+ +EL T D P I +D+P +GK+ + +LR
Sbjct: 574 LKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 103/418 (24%), Positives = 162/418 (38%), Gaps = 41/418 (9%)
Query: 155 ECDHYQPSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHEC-----DPISVNYTSGST 209
EC V + G +D+ LE FE +P E D V ++SG+
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE--RPTGEVSTKNEDICLVYFSSGTA 237
Query: 210 GDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CTWAMAAVGGINVC 268
G PK V + + + L +V D + D +GW C W I C
Sbjct: 238 GFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVAD----SGWGKCVWGKLYGQWIAGC 293
Query: 269 IRTV------SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVL 322
V AK + + + VT C P I + S N K +V AG
Sbjct: 294 AVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVV-AGEP 352
Query: 323 PTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQW---KPEGESSALDHEHEMTKHREGL 378
EV + F G + +G TE + W KP R+G
Sbjct: 353 LNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDG- 411
Query: 379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGD 438
+ +V ++ + +GK +G + + Y K+P+ TEE + +G+YHTGD
Sbjct: 412 -----RLCEVGEEGEIVINTMEGKPVG--------LFVHYGKDPERTEETWHDGYYHTGD 458
Query: 439 LAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVD---DQLKE 495
+A + DGY+ R DII + + EVE+ L+ +P VLE A+ G D Q+ +
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIK 518
Query: 496 VPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FFEDIPVNSTGKVQKFVLRGK 552
+ K ++ EL + PR I F ++P +GK+++ +R K
Sbjct: 519 ATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/361 (25%), Positives = 147/361 (40%), Gaps = 29/361 (8%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
D ++ YTSG+TG G + SH NSL + V + L ++ +G + +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
G + + I D L+ + T L G P + S + + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
I+G P + E A G + YGMTE + ++ +
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
R G + GV + + +G + V GY++ P+ T FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
++ TGDL + GYV + R D++I+G + E+E+ + + P V+E+AV+G
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASPEELVTFCG--DELPSCMVP-RAIFFEDIPVNSTGKVQKFVL 549
E AFV L RE +P E G +L +P IF +D+P N+ G VQ VL
Sbjct: 437 FGEGVTAFVVLX--REFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVL 494
Query: 550 R 550
R
Sbjct: 495 R 495
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/359 (23%), Positives = 143/359 (39%), Gaps = 25/359 (6%)
Query: 198 DPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG-WCCT 256
D ++ YTSG+TG G + SH NSL + V + L ++ +G + +
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVAS 215
Query: 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVII 316
G + + I D L+ + T L G P + S + + +
Sbjct: 216 NVTLFARGSMIFLPXFDPDXILD--LMARATVLMGVPTFYTRLLQ-SPRLTXETTGHMRL 272
Query: 317 VIAGVLPTIEVL--EQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKH 374
I+G P + E A G + YGMTE + ++ +
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTE----------------TNMNTSNPYDGD 316
Query: 375 R-EGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-G 432
R G + GV + + +G + V GY++ P+ T FR+ G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 433 WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQ 492
++ TGDL + GYV + R D++I+G + E+E+ + + P V+E+AV+G
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHAD 436
Query: 493 LKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLR 550
E A V G +++ +L +P IF +D+P N+ G VQ VLR
Sbjct: 437 FGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAF---------RNGWYHTGDLAVRNPDGYV 448
P LGE+ + GY P T E F Y TGDLA R DG +
Sbjct: 403 PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVL 462
Query: 449 QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE 508
+ R D + + EVEA L+ +P V +AAV+ + D +L + + + E +
Sbjct: 463 EYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DSRLGDKQLVAYVVAERAD 521
Query: 509 ASPE--ELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQKFVLRGK 552
A P+ EL + LP+ MVP + +++P GK+ + L G
Sbjct: 522 APPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 202 VNYTSGSTGDPKGVVYSHR---GAYLN 225
V +TSGSTG PKGV+ HR G YL
Sbjct: 219 VMFTSGSTGRPKGVMSPHRALTGTYLG 245
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 142/379 (37%), Gaps = 61/379 (16%)
Query: 193 PNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNG 252
P+ D V YTSG+TG+PKG + H+G + L +F N
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKG--------------------ISNLKVFFENS 217
Query: 253 WCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQR 312
T +G S +F ++L ++ IL N + + +
Sbjct: 218 LNVT-EKDRIGQFASISFDASVWEMFMALLTGASLYI-----ILKDTINDFVKFEQYINQ 271
Query: 313 KVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPE---------GESS 363
K I VI LP V+ +I+ P++V +WK + E++
Sbjct: 272 KEITVIT--LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETT 329
Query: 364 ALDHEHEMTKHREG--------LNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM 415
TK G + N I VD Q +KSV GE+ +
Sbjct: 330 ICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQ--LKSVGE----AGELCIGGEGLA 383
Query: 416 LGYFKNPKATEEAFRNG-------WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL 468
GY+K P+ T + F + Y TGD A DG ++ R + + +
Sbjct: 384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELE 443
Query: 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVP 528
EVE++LL + + E AV D Q E P + E+L F +ELP+ M+P
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQ--EQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIP 501
Query: 529 RA-IFFEDIPVNSTGKVQK 546
I + +P+ S GK+ +
Sbjct: 502 SYFIQLDKMPLTSNGKIDR 520
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/376 (21%), Positives = 146/376 (38%), Gaps = 42/376 (11%)
Query: 191 MQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ-ISRCDVRDMPVFLWTLDMFR 249
+ PN DP + YTSG+TG PKG + +H A + L + + D FL ++ +
Sbjct: 604 IDPN---DPAYIMYTSGTTGKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFL-SVSNYA 657
Query: 250 CNGWCCTWAMAAVGGINVCI----RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS 305
+ + + + + + I + + + D IL V + + N++ +A
Sbjct: 658 FDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-- 715
Query: 306 DQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSAL 365
++ ++ I+ G ++ H ++GP + E +
Sbjct: 716 -EDWMKGLRCILFGGERASVP-------------HVRKALRIMGPGKLINCYGPTEGTVF 761
Query: 366 DHEHEMTKHREGLNNLLI----QGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKN 421
H + + +++L I V N + G +GE+ V GY
Sbjct: 762 ATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFG-AVGELCISGMGVSKGYVNR 820
Query: 422 PKATEEAFRNG-------WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVL 474
T+E F Y TGDLA PDG ++ R D + I E+E L
Sbjct: 821 ADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQL 880
Query: 475 LSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAI-FF 533
P V +A VV + A+ L + S E++ +LP+ MVP+ F
Sbjct: 881 QEYPGVKDAVVVADRHESGDASINAY--LVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFL 938
Query: 534 EDIPVNSTGKVQKFVL 549
+++P+ + GKV K +L
Sbjct: 939 DELPLTTNGKVNKRLL 954
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 150/380 (39%), Gaps = 49/380 (12%)
Query: 204 YTSGSTGDPKGVVYSHRG--AYLNSLAQISRCDVRDMPVFL----WTLDMFRCNGWCCTW 257
+TSG+TG PKGV SH ++ N + + + DV P L ++ D+ W T
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDL-SVMYWAPTL 210
Query: 258 AMAAVGGINVCIRTVSA--KIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315
A+ G + + + A K +F +I V P +M + Q ++
Sbjct: 211 ALG--GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTH 268
Query: 316 IVIAGVLPTIEVLEQVANF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTK 373
G T+ ++ I +AYG TE A V SA++ EM
Sbjct: 269 FYFDGEELTVSTARKLFERFPSAKIINAYGPTE----ATVAL-------SAIEITREMV- 316
Query: 374 HREGLNNLLIQGVDVKQQNTMKSVPHDGKTL-----GEVMFRANTVMLGYFKNPKATEEA 428
+ L I K + + DGK L GE++ V GY NP+ T EA
Sbjct: 317 --DNYTRLPIGYP--KPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEA 372
Query: 429 F----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE-VEAVLLSNPKVLEA 483
F YHTGD+ D + + R D I A LE V L +P V A
Sbjct: 373 FFTFKGQPAYHTGDIGSLTEDN-ILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASA 431
Query: 484 AVVGKVDDQLK-EVPVAFVKLKEG-REASPEEL------VTFCGDELPSCMVPRAIFFED 535
V + + + K + +A++ +K+G +E EL D + S M+P + D
Sbjct: 432 VAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRD 491
Query: 536 -IPVNSTGKVQKFVLRGKVN 554
+P+ GK+ L +VN
Sbjct: 492 SLPLTPNGKIDIKTLINEVN 511
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 148/382 (38%), Gaps = 58/382 (15%)
Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM-----PVFL----WTLDMFRCNGWC 254
YTSGSTG+PKGV ++ N L ++ V D VFL ++ D+ + +
Sbjct: 151 YTSGSTGNPKGVQITY-----NCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM-IANASASDQNQLQRK 313
+ I+ + K +F S+ + P M + AS S+ K
Sbjct: 206 SLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMK 264
Query: 314 VIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM- 371
+ VLP + + F I + YG TE A V LD +
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATVAVTGIHVTEEVLDQYKSLP 320
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR- 430
+ + LLI D ++ DG+ GE++ +V +GY +P+ TE+AF
Sbjct: 321 VGYCKSDCRLLIMKED-------GTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTM 372
Query: 431 ---NGWYHTGDLAVRNPDGYVQ----MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
Y TGD GYV+ + R D I LE L +E
Sbjct: 373 IDGERAYKTGDA------GYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG 426
Query: 484 AVV-----GKVDDQLKEVPV----AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE 534
AV+ G+ D L V V +F K + A +EL + LP+ M+PR ++
Sbjct: 427 AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL----NERLPNYMIPRKFMYQ 482
Query: 535 -DIPVNSTGKVQKFVLRGKVNA 555
IP+ GKV + L +V A
Sbjct: 483 SSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/382 (25%), Positives = 148/382 (38%), Gaps = 58/382 (15%)
Query: 204 YTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDM-----PVFL----WTLDMFRCNGWC 254
YTSGSTG+PKGV ++ N L ++ V D VFL ++ D+ + +
Sbjct: 151 YTSGSTGNPKGVQITY-----NCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205
Query: 255 CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNM-IANASASDQNQLQRK 313
+ I+ + K +F S+ + P M + AS S+ K
Sbjct: 206 SLVTGGTLWAIDKDM-IARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMK 264
Query: 314 VIIVIAGVLPTIEVLEQVANF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEM- 371
+ VLP + + F I + YG TE A V LD +
Sbjct: 265 TFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE----ATVAVTGIHVTEEVLDQYKSLP 320
Query: 372 TKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFR- 430
+ + LLI D ++ DG+ GE++ +V +GY +P+ TE+AF
Sbjct: 321 VGYCKSDCRLLIMKED-------GTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTM 372
Query: 431 ---NGWYHTGDLAVRNPDGYVQ----MKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483
Y TGD GYV+ + R D I LE L +E
Sbjct: 373 IDGERAYKTGDA------GYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEG 426
Query: 484 AVV-----GKVDDQLKEVPV----AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFE 534
AV+ G+ D L V V +F K + A +EL + LP+ M+PR ++
Sbjct: 427 AVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKEL----NERLPNYMIPRKFMYQ 482
Query: 535 -DIPVNSTGKVQKFVLRGKVNA 555
IP+ GKV + L +V A
Sbjct: 483 SSIPMTPNGKVDRKKLLSEVTA 504
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 384 QGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRN 443
G++++ + P + +G + ++ GYF + + +E GW TGDL
Sbjct: 393 HGIEIRNE---AGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL 449
Query: 444 PDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLK 494
DGY+ + R KD+II I ++E + P++ + V Q K
Sbjct: 450 -DGYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK 499
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 183 MGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMP 239
+ +AD + +P D + YTSGST P+GV+ +HR N L IS ++ P
Sbjct: 162 LPEADVALQRPVPN-DIAYLQYTSGSTRFPRGVIITHREVXAN-LRAISHDGIKLRP 216
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 153/399 (38%), Gaps = 58/399 (14%)
Query: 178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCD--V 235
+LLE Q E + + YTSGSTG+PKGV S A L S D V
Sbjct: 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPV 181
Query: 236 RDMPVFL----WTLDMFRCNGWCCTWAMAAVGGINVCIRTVSA---KIIFDSILIHKVTH 288
+FL ++ D+ + + C + GG C+ + K++F+ + +
Sbjct: 182 SGGKIFLNQAPFSFDLSVMDLYPCLQS----GGTLHCVTKDAVNKPKVLFEELKKSGLNV 237
Query: 289 LCGQPRILNMIANASASDQNQLQRKVIIVIAG-VLPTIEVLEQVANF-GFNIRHAYGMTE 346
P + M Q+ L + G VLP + F I + YG TE
Sbjct: 238 WTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE 297
Query: 347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLN--------NLLIQGVDVKQQNTMKSVP 398
++++ +++ E L N+ I +D + Q +P
Sbjct: 298 ATVAV-----------TSVEITNDVISRSESLPVGFAKPDMNIFI--MDEEGQ----PLP 340
Query: 399 HDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD-GYVQ----MKDR 453
K GE++ +V GY P+ TE+AF + H G A R D G++Q
Sbjct: 341 EGEK--GEIVIAGPSVSRGYLGEPELTEKAF---FSHEGQWAYRTGDAGFIQDGQIFCQG 395
Query: 454 RKDIIISGAEIISSL-EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE 512
R D I L E+E + + V A V+ + E +A + +E
Sbjct: 396 RLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEF 455
Query: 513 ELVTFCGDE----LPSCMVPRAIFFED-IPVNSTGKVQK 546
+L + E LP+ M+PR ++D I + + GK+ +
Sbjct: 456 QLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 383 IQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF--------RNGWY 434
IQ V + +T+ +P D +GE+ ++N+V GY+ P+ T AF R+ Y
Sbjct: 380 IQEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 435 -HTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478
TGDL + + + + R KD+II + ++E L +P
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 202 VNYTSGSTGDPKGVVYSHR---GAYLN 225
V +TSGSTG PKGV+ HR G YL
Sbjct: 219 VMFTSGSTGRPKGVMSPHRALTGTYLG 245
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 108/307 (35%), Gaps = 52/307 (16%)
Query: 179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN--SLAQISRCDVR 236
DLL++ + + + + YTSGST P GVV SH+ +N L D
Sbjct: 165 DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTD 224
Query: 237 DMP-----VFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTH--- 288
+P + W L + G +GG + + + + + H
Sbjct: 225 GIPPPNSALVSW-LPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFH 283
Query: 289 -LCGQPRILNMIANASASDQNQLQR---KVIIVIAGV----LPTIEVL-EQVANFGFN-- 337
P +A +D + R ++ +++G TI+ ++ A F
Sbjct: 284 AFSAAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQER 343
Query: 338 -IRHAYGMTEVLGPAIVRQWKP--EGESSALDHEHEMTKHRE-----GLNNLLIQG---- 385
IR +YG+ E V KP E+ D E H + G +L+
Sbjct: 344 VIRPSYGLAEAT--VYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRS 401
Query: 386 --VDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF------------RN 431
V + +T P DG T+GE+ + V GY++ P +E F
Sbjct: 402 PIVRIVDSDTCIECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459
Query: 432 GWYHTGD 438
W TGD
Sbjct: 460 PWLRTGD 466
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 15/155 (9%)
Query: 405 GEVMFRANTVMLGYFKNPKATEEAF------RNG----WYHTGDLAVRNPDGYVQMKDRR 454
GE+ + GY + P+ T E F + G +Y TGDL PDG + R
Sbjct: 378 GELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRA 437
Query: 455 K-DIIISGAEI-ISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPE 512
I + G I +S +E AV + V V + + A+V +EG +
Sbjct: 438 DLQIKLRGYRIELSDIET-AVRRHDDVVDAVVTVREFKPGDLRLVCAYVA-REGSATTAR 495
Query: 513 ELVTFCGDELPSCMVP-RAIFFEDIPVNSTGKVQK 546
EL LP+ M P R + +P GKV +
Sbjct: 496 ELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDR 530
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 202 VNYTSGSTGDPKGVVYSH 219
V YTSG+TG+PKGV H
Sbjct: 180 VIYTSGTTGNPKGVPVRH 197
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLN 225
DLL++ + + + + YTSGST P GVV SH+ +N
Sbjct: 165 DLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVN 211
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 391 QNTMKSVPHDGKTLGEVM-FRANTVMLGYFKNPKATEEAFRNGWY--HTGDLA--VRNPD 445
T+ HD + E + A +L + A E A ++ W H DLA R
Sbjct: 14 DGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAP 73
Query: 446 GYVQM------KDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVA 499
G V++ + R I+ A ++ + +EA+ L++ EA V+G+ + K P
Sbjct: 74 GAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLAD-CFAEADVLGRDEAPPKPHPGG 132
Query: 500 FVKLKEGREASPEELV 515
+KL E + SP V
Sbjct: 133 LLKLAEAWDVSPSRXV 148
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 171 PSGSLDYNDLLEMGKADFEMMQPNHECDPIS-VNYTSGSTGDPKGVVYSHRGAYLNSLAQ 229
P+ L + + A + +P D I+ +N++SG+TG PK + +H G L Q
Sbjct: 137 PANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQ 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,257,471
Number of Sequences: 62578
Number of extensions: 668350
Number of successful extensions: 1671
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 121
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)