Query 008535
Match_columns 562
No_of_seqs 184 out of 2415
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 7.8E-81 2.7E-85 652.6 47.4 510 13-560 12-547 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 7.1E-80 2.4E-84 643.5 50.4 504 19-555 21-535 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 7.4E-80 2.5E-84 640.0 47.8 503 14-557 10-515 (517)
4 1v25_A Long-chain-fatty-acid-C 100.0 1.8E-80 6E-85 648.3 42.6 520 13-559 11-540 (541)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.3E-79 3.2E-83 635.0 49.7 501 17-557 22-533 (539)
6 4fuq_A Malonyl COA synthetase; 100.0 5.2E-79 1.8E-83 631.5 46.5 491 24-556 4-501 (503)
7 3ivr_A Putative long-chain-fat 100.0 3.1E-79 1.1E-83 635.3 40.5 498 16-558 2-504 (509)
8 1t5h_X 4-chlorobenzoyl COA lig 100.0 7E-78 2.4E-82 624.0 50.4 483 20-554 2-503 (504)
9 3o83_A Peptide arylation enzym 100.0 2.5E-79 8.6E-84 640.0 39.0 505 16-556 26-541 (544)
10 2d1s_A Luciferase, luciferin 4 100.0 1E-77 3.6E-82 627.9 50.6 504 20-557 25-545 (548)
11 3rix_A Luciferase, luciferin 4 100.0 1.9E-79 6.6E-84 642.2 37.2 513 14-559 14-545 (550)
12 3etc_A AMP-binding protein; ad 100.0 2.9E-77 9.9E-82 627.3 51.6 503 19-556 54-580 (580)
13 1pg4_A Acetyl-COA synthetase; 100.0 2E-76 6.8E-81 629.5 50.1 510 21-556 77-622 (652)
14 3fce_A D-alanine--poly(phospho 100.0 7.7E-77 2.6E-81 617.8 44.2 494 20-560 1-509 (512)
15 3e7w_A D-alanine--poly(phospho 100.0 3.7E-76 1.3E-80 612.2 47.0 490 20-557 1-505 (511)
16 1amu_A GRSA, gramicidin synthe 100.0 1.2E-75 4.3E-80 613.3 48.0 481 19-555 38-529 (563)
17 3rg2_A Enterobactin synthase c 100.0 2.3E-75 7.8E-80 619.0 50.0 501 15-556 22-535 (617)
18 1ry2_A Acetyl-coenzyme A synth 100.0 1.7E-75 5.7E-80 622.5 48.1 512 21-556 83-638 (663)
19 3c5e_A Acyl-coenzyme A synthet 100.0 1.8E-75 6.3E-80 612.9 47.4 497 21-556 39-563 (570)
20 3ipl_A 2-succinylbenzoate--COA 100.0 4.4E-76 1.5E-80 610.8 41.5 497 20-557 1-499 (501)
21 3l8c_A D-alanine--poly(phospho 100.0 1.4E-75 4.7E-80 610.0 42.6 490 19-557 3-514 (521)
22 4gr5_A Non-ribosomal peptide s 100.0 1.9E-76 6.4E-81 621.9 34.5 481 18-552 73-568 (570)
23 2v7b_A Benzoate-coenzyme A lig 100.0 1.9E-74 6.4E-79 602.3 47.7 495 21-551 25-528 (529)
24 4dg8_A PA1221; ANL superfamily 100.0 3E-74 1E-78 607.5 46.2 477 18-556 25-514 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 2.1E-75 7.1E-80 650.9 37.2 512 19-557 60-584 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.2E-74 1.1E-78 595.5 32.0 473 19-551 21-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 7.4E-73 2.5E-77 599.2 34.2 507 17-559 8-571 (590)
28 3ite_A SIDN siderophore synthe 100.0 1.1E-72 3.8E-77 593.3 31.9 494 15-558 15-546 (562)
29 2vsq_A Surfactin synthetase su 100.0 2.6E-70 8.7E-75 624.5 44.0 487 17-555 461-960 (1304)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.2E-70 7.7E-75 579.0 40.0 501 19-558 20-566 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.3E-58 8E-63 476.0 30.5 405 13-453 17-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4.5E-54 1.5E-58 423.4 21.5 317 197-559 37-358 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 9.8E-48 3.4E-52 390.7 22.9 326 194-550 82-432 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 3.8E-48 1.3E-52 394.6 19.3 332 194-553 89-442 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 9.7E-48 3.3E-52 390.9 19.0 328 194-550 87-434 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.5E-29 1.9E-33 246.9 17.3 236 194-463 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 2.4E-15 8E-20 119.7 5.9 101 452-553 1-109 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 1E-14 3.4E-19 115.7 7.0 94 452-547 1-102 (109)
39 4eql_A 4-substituted benzoates 98.9 3E-08 1E-12 100.8 15.5 85 402-503 384-480 (581)
40 4b2g_A GH3-1 auxin conjugating 98.9 2.9E-08 9.8E-13 101.0 14.7 86 402-504 396-493 (609)
41 4epl_A Jasmonic acid-amido syn 98.7 3.2E-07 1.1E-11 92.9 17.4 86 402-504 391-488 (581)
42 3qov_A Phenylacetate-coenzyme 93.1 0.88 3E-05 45.0 12.6 91 45-136 105-197 (436)
43 2y27_A Phenylacetate-coenzyme 92.9 1 3.4E-05 44.6 12.8 90 45-135 109-200 (437)
44 2y4o_A Phenylacetate-coenzyme 92.7 1.1 3.6E-05 44.5 12.7 90 45-135 111-202 (443)
45 3ipl_A 2-succinylbenzoate--COA 80.5 14 0.00049 36.9 12.2 97 33-133 161-267 (501)
46 3hgu_A EHPF; phenazine, antibi 78.2 4.9 0.00017 38.4 7.6 85 45-131 110-219 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 77.7 30 0.001 34.9 13.7 99 33-135 180-290 (539)
48 2d1s_A Luciferase, luciferin 4 77.4 11 0.00036 38.4 10.2 96 35-132 192-298 (548)
49 3o83_A Peptide arylation enzym 74.4 21 0.00073 36.1 11.5 86 44-133 209-297 (544)
50 3r44_A Fatty acyl COA syntheta 70.7 25 0.00084 35.3 10.9 85 44-133 188-274 (517)
51 3rg2_A Enterobactin synthase c 70.4 66 0.0023 33.0 14.4 88 44-135 202-292 (617)
52 3rix_A Luciferase, luciferin 4 67.4 21 0.0007 36.3 9.6 89 44-133 208-297 (550)
53 3ivr_A Putative long-chain-fat 62.8 51 0.0017 32.8 11.4 85 44-133 178-264 (509)
54 4gs5_A Acyl-COA synthetase (AM 62.7 39 0.0013 31.9 9.9 82 44-131 55-137 (358)
55 3tbh_A O-acetyl serine sulfhyd 62.3 39 0.0013 31.6 9.7 91 34-126 34-127 (334)
56 3g7s_A Long-chain-fatty-acid-- 62.2 51 0.0017 33.3 11.3 89 44-136 198-287 (549)
57 1t5h_X 4-chlorobenzoyl COA lig 61.8 43 0.0015 33.4 10.6 98 33-134 151-261 (504)
58 3fce_A D-alanine--poly(phospho 61.1 22 0.00074 35.7 8.2 84 44-130 162-248 (512)
59 3kxw_A Saframycin MX1 syntheta 58.9 25 0.00084 36.0 8.3 98 33-133 165-276 (590)
60 3ni2_A 4-coumarate:COA ligase; 58.3 54 0.0019 32.9 10.7 97 195-299 35-135 (536)
61 3e7w_A D-alanine--poly(phospho 58.0 29 0.00098 34.7 8.5 85 44-131 161-248 (511)
62 3c5e_A Acyl-coenzyme A synthet 57.4 44 0.0015 34.0 9.8 86 44-132 224-312 (570)
63 1v25_A Long-chain-fatty-acid-C 54.2 62 0.0021 32.5 10.3 91 44-135 194-285 (541)
64 1pg4_A Acetyl-COA synthetase; 53.5 59 0.002 33.7 10.2 87 45-133 275-366 (652)
65 3nyq_A Malonyl-COA ligase; A/B 52.6 60 0.002 32.3 9.8 85 44-133 173-259 (505)
66 3vc3_A Beta-cyanoalnine syntha 49.8 49 0.0017 31.1 8.1 90 35-126 50-142 (344)
67 1amu_A GRSA, gramicidin synthe 46.9 1.1E+02 0.0038 30.9 10.9 84 215-299 63-150 (563)
68 3ezx_A MMCP 1, monomethylamine 45.1 88 0.003 27.0 8.3 90 236-331 91-195 (215)
69 4gr5_A Non-ribosomal peptide s 44.9 57 0.002 33.1 8.3 97 33-133 212-319 (570)
70 4fuq_A Malonyl COA synthetase; 44.8 1.1E+02 0.0037 30.4 10.3 80 215-295 27-110 (503)
71 3t5a_A Long-chain-fatty-acid-- 44.7 1.2E+02 0.004 29.8 10.5 106 195-302 37-149 (480)
72 4eez_A Alcohol dehydrogenase 1 43.0 93 0.0032 29.0 9.0 78 45-125 136-216 (348)
73 3etc_A AMP-binding protein; ad 41.7 1.3E+02 0.0045 30.5 10.5 95 195-294 69-167 (580)
74 3tsy_A Fusion protein 4-coumar 40.6 1.3E+02 0.0043 33.1 10.7 95 195-297 74-172 (979)
75 2q3b_A Cysteine synthase A; py 39.2 1.2E+02 0.004 27.9 8.8 88 36-126 32-122 (313)
76 3ju7_A Putative PLP-dependent 38.8 65 0.0022 30.6 7.2 60 62-124 70-136 (377)
77 2egu_A Cysteine synthase; O-ac 38.7 1.2E+02 0.0042 27.7 8.8 89 35-126 29-120 (308)
78 1ve1_A O-acetylserine sulfhydr 38.3 2E+02 0.007 26.1 10.3 64 62-126 51-117 (304)
79 3gqw_A Fatty acid AMP ligase; 38.1 73 0.0025 32.2 7.9 97 34-132 175-285 (576)
80 1y7l_A O-acetylserine sulfhydr 36.8 1.5E+02 0.0053 27.1 9.3 90 34-126 25-117 (316)
81 4aec_A Cysteine synthase, mito 36.5 1.2E+02 0.0041 29.5 8.5 63 63-125 166-229 (430)
82 1ry2_A Acetyl-coenzyme A synth 36.4 1.6E+02 0.0054 30.5 10.2 96 195-294 95-195 (663)
83 2v7b_A Benzoate-coenzyme A lig 35.9 73 0.0025 31.9 7.4 85 44-131 201-288 (529)
84 3tla_A MCCF; serine protease, 35.9 1.1E+02 0.0037 29.1 8.0 62 65-126 38-118 (371)
85 3ri6_A O-acetylhomoserine sulf 35.4 1.4E+02 0.0049 28.8 9.2 15 112-126 141-155 (430)
86 3ijw_A Aminoglycoside N3-acety 35.0 69 0.0024 28.7 6.1 25 56-80 18-42 (268)
87 2pqm_A Cysteine synthase; OASS 34.7 1.4E+02 0.0047 27.9 8.6 88 36-126 43-133 (343)
88 3l8c_A D-alanine--poly(phospho 34.3 1.9E+02 0.0064 28.7 10.2 88 44-132 163-253 (521)
89 3tqh_A Quinone oxidoreductase; 34.2 93 0.0032 28.6 7.3 75 45-124 125-203 (321)
90 2v03_A Cysteine synthase B; py 33.9 1.8E+02 0.006 26.5 9.1 64 62-126 52-116 (303)
91 4h1h_A LMO1638 protein; MCCF-l 33.3 1.6E+02 0.0054 27.3 8.6 61 66-126 8-87 (327)
92 2cvi_A 75AA long hypothetical 32.8 1.2E+02 0.0041 21.1 6.1 48 467-524 15-62 (83)
93 1zsy_A Mitochondrial 2-enoyl t 32.6 1.6E+02 0.0054 27.6 8.8 79 45-124 139-223 (357)
94 4e5s_A MCCFLIKE protein (BA_56 32.3 1.4E+02 0.0048 27.7 8.1 61 66-126 8-87 (331)
95 3sr3_A Microcin immunity prote 31.6 1.7E+02 0.006 27.1 8.6 61 66-126 9-88 (336)
96 4dg8_A PA1221; ANL superfamily 31.5 94 0.0032 31.9 7.4 97 33-133 162-269 (620)
97 1eg5_A Aminotransferase; PLP-d 31.3 1.7E+02 0.0058 27.2 8.9 56 68-124 87-146 (384)
98 3dzz_A Putative pyridoxal 5'-p 30.8 1.6E+02 0.0055 27.5 8.7 56 67-125 106-168 (391)
99 1o69_A Aminotransferase; struc 30.8 1.6E+02 0.0055 27.8 8.6 60 63-125 65-130 (394)
100 2e7j_A SEP-tRNA:Cys-tRNA synth 29.5 2.6E+02 0.0087 25.8 9.8 56 67-125 90-155 (371)
101 1h2b_A Alcohol dehydrogenase; 29.2 1.8E+02 0.0061 27.2 8.5 63 61-126 176-240 (359)
102 2jtq_A Phage shock protein E; 29.2 1.1E+02 0.0038 21.2 5.4 46 44-96 22-67 (85)
103 3sma_A FRBF; N-acetyl transfer 28.7 39 0.0013 30.6 3.4 30 44-80 20-49 (286)
104 2nyg_A YOKD protein; PFAM02522 28.4 40 0.0014 30.4 3.4 24 57-80 17-40 (273)
105 3pc3_A CG1753, isoform A; CBS, 28.3 1.8E+02 0.006 29.1 8.6 62 63-125 105-167 (527)
106 1z7w_A Cysteine synthase; tran 27.8 2.2E+02 0.0074 26.2 8.6 91 34-126 29-122 (322)
107 1mdo_A ARNB aminotransferase; 27.4 1.5E+02 0.0051 27.9 7.7 57 64-124 73-134 (393)
108 3a2b_A Serine palmitoyltransfe 27.2 3.2E+02 0.011 25.5 10.2 55 67-125 124-181 (398)
109 3l6b_A Serine racemase; pyrido 27.1 1.1E+02 0.0036 28.8 6.3 59 70-129 76-134 (346)
110 3b8x_A WBDK, pyridoxamine 5-ph 27.0 2.2E+02 0.0074 26.7 8.8 55 66-124 76-135 (390)
111 1vjk_A Molybdopterin convertin 26.5 1.3E+02 0.0044 21.9 5.5 45 19-78 36-94 (98)
112 1ofu_X SULA, hypothetical prot 25.8 2.2E+02 0.0076 21.7 7.4 53 58-110 46-100 (119)
113 3qwb_A Probable quinone oxidor 25.7 2.9E+02 0.01 25.3 9.2 56 65-124 144-200 (334)
114 2zbc_A 83AA long hypothetical 25.7 1.2E+02 0.004 20.9 5.0 48 467-524 15-62 (83)
115 4h27_A L-serine dehydratase/L- 25.4 1.4E+02 0.0046 28.3 6.8 58 73-130 95-152 (364)
116 3isl_A Purine catabolism prote 25.3 2.4E+02 0.0081 26.6 8.8 57 67-124 83-143 (416)
117 3lvm_A Cysteine desulfurase; s 25.0 3.5E+02 0.012 25.5 10.0 56 68-124 111-170 (423)
118 3two_A Mannitol dehydrogenase; 25.0 2E+02 0.007 26.6 8.0 74 45-122 149-225 (348)
119 3jv7_A ADH-A; dehydrogenase, n 24.9 1.7E+02 0.0058 27.1 7.4 78 46-126 143-225 (345)
120 3zrp_A Serine-pyruvate aminotr 24.5 2.6E+02 0.009 25.8 8.9 58 67-125 74-135 (384)
121 2djw_A Probable transcriptiona 24.4 1.5E+02 0.005 21.1 5.4 49 467-525 15-63 (92)
122 1o58_A O-acetylserine sulfhydr 24.4 3.6E+02 0.012 24.3 9.4 63 61-126 57-120 (303)
123 3ndn_A O-succinylhomoserine su 24.2 2.9E+02 0.0098 26.4 9.1 14 211-224 235-248 (414)
124 3s2e_A Zinc-containing alcohol 24.1 1.6E+02 0.0056 27.1 7.1 77 45-125 139-218 (340)
125 4eb5_A Probable cysteine desul 24.0 1.6E+02 0.0054 27.5 7.1 11 69-79 87-97 (382)
126 3dwg_A Cysteine synthase B; su 23.9 2.3E+02 0.0078 26.1 7.9 64 62-126 64-128 (325)
127 3ist_A Glutamate racemase; str 23.8 3.8E+02 0.013 23.9 9.1 57 24-84 19-81 (269)
128 2z9v_A Aspartate aminotransfer 23.2 2.4E+02 0.0083 26.3 8.4 58 67-125 80-142 (392)
129 2bkw_A Alanine-glyoxylate amin 23.1 3.9E+02 0.013 24.6 9.8 57 68-125 84-145 (385)
130 2cb1_A O-acetyl homoserine sul 22.7 2.8E+02 0.0096 26.3 8.7 54 67-123 92-146 (412)
131 2jwk_A Protein TOLR; periplasm 22.6 1.4E+02 0.0049 20.0 4.8 33 22-54 32-64 (74)
132 2ch1_A 3-hydroxykynurenine tra 22.6 2.9E+02 0.01 25.7 8.8 56 67-123 90-149 (396)
133 1elu_A L-cysteine/L-cystine C- 22.2 2.1E+02 0.0072 26.6 7.7 9 214-222 229-237 (390)
134 4hvk_A Probable cysteine desul 22.2 1.6E+02 0.0054 27.4 6.7 15 69-83 87-101 (382)
135 3f9t_A TDC, L-tyrosine decarbo 22.0 4.7E+02 0.016 24.1 10.6 54 67-123 120-177 (397)
136 3krt_A Crotonyl COA reductase; 21.9 1.8E+02 0.006 28.4 7.1 76 45-124 198-280 (456)
137 1oft_A SULA, hypothetical prot 21.9 2.4E+02 0.0082 22.9 6.5 37 59-95 89-125 (161)
138 1gu7_A Enoyl-[acyl-carrier-pro 21.7 1.6E+02 0.0055 27.6 6.6 79 45-124 138-223 (364)
139 3nnk_A Ureidoglycine-glyoxylat 21.7 3.1E+02 0.011 25.7 8.9 20 105-124 126-145 (411)
140 4ej6_A Putative zinc-binding d 21.3 3.7E+02 0.013 25.1 9.1 59 61-123 174-233 (370)
141 3ss7_X D-serine dehydratase; t 21.2 1.9E+02 0.0065 28.2 7.0 100 35-134 101-223 (442)
142 2rkb_A Serine dehydratase-like 21.1 1.9E+02 0.0065 26.5 6.8 59 70-129 54-112 (318)
143 4d9i_A Diaminopropionate ammon 21.0 5E+02 0.017 24.6 10.0 58 74-131 115-172 (398)
144 3i16_A Aluminum resistance pro 20.9 2.4E+02 0.0083 27.2 7.7 59 67-125 112-184 (427)
145 3n75_A LDC, lysine decarboxyla 20.8 7.3E+02 0.025 25.9 12.0 56 67-125 232-306 (715)
146 3ite_A SIDN siderophore synthe 20.8 1.3E+02 0.0043 30.3 6.0 85 44-128 193-283 (562)
147 1t3i_A Probable cysteine desul 20.7 2.2E+02 0.0074 26.9 7.5 11 213-223 238-248 (420)
148 1y80_A Predicted cobalamin bin 20.6 3.8E+02 0.013 22.5 8.3 57 70-126 88-148 (210)
149 2cf5_A Atccad5, CAD, cinnamyl 20.6 2E+02 0.0068 26.8 7.0 78 45-125 152-233 (357)
150 2duw_A Putative COA-binding pr 20.5 1.4E+02 0.0049 23.6 5.0 9 34-42 13-21 (145)
151 2z61_A Probable aspartate amin 20.3 3E+02 0.01 25.4 8.3 50 68-123 111-160 (370)
152 1pl8_A Human sorbitol dehydrog 20.2 2.7E+02 0.0093 25.8 7.8 75 45-124 145-223 (356)
153 2c81_A Glutamine-2-deoxy-scyll 20.1 1.7E+02 0.0058 27.9 6.6 58 63-124 75-137 (418)
154 1y81_A Conserved hypothetical 20.1 1.6E+02 0.0055 23.1 5.2 49 70-119 70-118 (138)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.8e-81 Score=652.60 Aligned_cols=510 Identities=22% Similarity=0.335 Sum_probs=400.9
Q ss_pred cccCCCCCChHHHHHHHHHHcCCceEEEECC--------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Q 008535 13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT--------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84 (562)
Q Consensus 13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~ 84 (562)
.....+..|+.++|+++++.+|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|+++++
T Consensus 12 p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 91 (549)
T 3g7s_A 12 PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV 91 (549)
T ss_dssp CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 4456688999999999999999999999877 88999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535 85 KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC 164 (562)
Q Consensus 85 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (562)
+++|||+++|++++|+++.++.+++.+++++++++++|++....+.+........ ...++.++.
T Consensus 92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~~~~~~--------- 155 (549)
T 3g7s_A 92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-------VERVFVVGG--------- 155 (549)
T ss_dssp HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-------CCEEEEETC---------
T ss_pred HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-------CcEEEEeCC---------
Confidence 9999999999999999999999999999999999999999988777766544322 223333221
Q ss_pred cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeee
Q 008535 165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWT 244 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~ 244 (562)
....+.++...............++|+++|+|||||||.||||.++|+++..........+++.++|+++..
T Consensus 156 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~ 227 (549)
T 3g7s_A 156 --------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC 227 (549)
T ss_dssp --------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECC
T ss_pred --------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 123455555544333222222334899999999999999999999999999999988889999999999999
Q ss_pred cccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCC
Q 008535 245 LDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVL 322 (562)
Q Consensus 245 ~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~ 322 (562)
+|++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++...... .+++++|.+++||++
T Consensus 228 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~ 307 (549)
T 3g7s_A 228 MPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWP 307 (549)
T ss_dssp SCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSC
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCcc
Confidence 999999999888888999999999999999999999999999999999999999988765444 568899999999999
Q ss_pred ChHHHHHHHHh-----cC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535 323 PTIEVLEQVAN-----FG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM 394 (562)
Q Consensus 323 l~~~~~~~~~~-----~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 394 (562)
+++++.+.+.+ ++ +++++.||+||++++++.... ........+|.|.++. .++|++.+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g 375 (549)
T 3g7s_A 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP-----------LRLDKSTTQGVPMSDI-ELKVISLEDG 375 (549)
T ss_dssp CCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG-----------GGGGGTTSCCEECTTC-EEEEECSSSC
T ss_pred CCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc-----------cccCcCCCccccCCCC-EEEEEeCCCC
Confidence 99999998874 45 889999999999877665421 1112345678888777 8888987788
Q ss_pred ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh---ccc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHH
Q 008535 395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF---RNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLE 469 (562)
Q Consensus 395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~ 469 (562)
++++.| +.|||+|+|++++.||+++++.+.+.| .+| ||+|||+|++|+||.+++.||.||+||++|++|+|.+
T Consensus 376 ~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 453 (549)
T 3g7s_A 376 RELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453 (549)
T ss_dssp CEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHH
T ss_pred cCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH
Confidence 888877 679999999999999999999999998 677 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCC--CCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchH
Q 008535 470 VEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEG--REASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQK 546 (562)
Q Consensus 470 iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~--~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r 546 (562)
||++|.++|+|.+++|++.+++..++.++++|++.++ ...+.++++++++++|+.|++|+.+.+++ ||+|++||++|
T Consensus 454 IE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R 533 (549)
T 3g7s_A 454 LEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLR 533 (549)
T ss_dssp HHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------
T ss_pred HHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeH
Confidence 9999999999999999999999889999999999876 56788999999999999999999877655 99999999999
Q ss_pred HHHhhhhhhhcccc
Q 008535 547 FVLRGKVNATAVGW 560 (562)
Q Consensus 547 ~~l~~~~~~~~~~~ 560 (562)
++|++.+.......
T Consensus 534 ~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 534 RLLREKEAEGHHHH 547 (549)
T ss_dssp --------------
T ss_pred HHHHHHhhcccccc
Confidence 99999988776443
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.1e-80 Score=643.47 Aligned_cols=504 Identities=23% Similarity=0.345 Sum_probs=433.8
Q ss_pred CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
.+|+.++|.++++.+|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 479999999999999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535 97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176 (562)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
++|+++.++.+++.++++.++++++|++....+.+........ ..++.++... .+...
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--------------~~~~~ 158 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD--------VKVMCVDSAP--------------DGCLH 158 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT--------CEEEESSCCC--------------TTCEE
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC--------ceEEEecCCC--------------CCccC
Confidence 9999999999999999999999999999988777766544321 1233332211 12234
Q ss_pred hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcCCCCCCeeeeecccccchh
Q 008535 177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCDVRDMPVFLWTLDMFRCNG 252 (562)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~~g 252 (562)
+.++........ ......++|+++|+|||||||.||||.+||+++......... .+.+..+|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 444444332221 222356789999999999999999999999999887766543 356789999999999999999
Q ss_pred hHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535 253 WCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV 331 (562)
Q Consensus 253 l~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~ 331 (562)
+.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+.+
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 317 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV 317 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence 864 6777889999999999999999999999999999999999999999887777889999999999999999999999
Q ss_pred H-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535 332 A-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF 409 (562)
Q Consensus 332 ~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v 409 (562)
+ .+ ++++++.||+||++++++.+..... .........+|.|.++. .++|+|.+++.+++.| +.|||+|
T Consensus 318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v 387 (536)
T 3ni2_A 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAK-------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICI 387 (536)
T ss_dssp HHHCTTSEEEEEEECGGGSSEEEECGGGSS-------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEE
T ss_pred HHHCCCCCccccccccccchhhhcccccCC-------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEE
Confidence 8 45 8999999999999877665432111 01112335678888877 8888887788888877 7799999
Q ss_pred cchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535 410 RANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488 (562)
Q Consensus 410 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 488 (562)
+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 388 ~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~ 467 (536)
T 3ni2_A 388 RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGL 467 (536)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred eCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEee
Confidence 99999999999999999999 58999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA 555 (562)
Q Consensus 489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~ 555 (562)
+++..++.++++|+..++...+.++++++++++++.|++|+.+++++ ||+|++||++|++|++++.+
T Consensus 468 ~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 468 KDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 99999999999999988888889999999999999999999888665 99999999999999998864
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.4e-80 Score=640.00 Aligned_cols=503 Identities=26% Similarity=0.380 Sum_probs=427.4
Q ss_pred ccCCCCCChHHHHHHHHHHcCCceEEEECCe--eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhh
Q 008535 14 SANNVPLTPIDFLERAAHVYGDATSIIYGTV--RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVP 91 (562)
Q Consensus 14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 91 (562)
.......|+.++|+++++.+|+++|+++.+. ++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 3444567999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535 92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP 171 (562)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
++|++++|+++.++.+++.+++++++++++|++......+.......... ..++.+..
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------------- 147 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP------GTVTDWIG---------------- 147 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC------TTCCEEEE----------------
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc------cEEEEccC----------------
Confidence 99999999999999999999999999999999998877766654432211 01110000
Q ss_pred CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535 172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 251 (562)
...+.+........ .......++|+++|+|||||||.||||++||+++..........+++.++|++++.+|++|.+
T Consensus 148 --~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~ 224 (517)
T 3r44_A 148 --ADSLAERLRSAAAD-EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVA 224 (517)
T ss_dssp --HHHHHHHHHHCCCC-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHH
T ss_pred --cccHHHHhhccCcC-CCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHH
Confidence 01122222222211 122235678999999999999999999999999999999988999999999999999999999
Q ss_pred hhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535 252 GWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV 331 (562)
Q Consensus 252 gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~ 331 (562)
++...+..++.|+++++.+.+++..+++.++++++|++.++|++++.|.+..+....+++++|.+++||+++++++.+.+
T Consensus 225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~ 304 (517)
T 3r44_A 225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIY 304 (517)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHH
Confidence 99887777779999999999999999999999999999999999999998877667788999999999999999999999
Q ss_pred HhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535 332 ANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA 411 (562)
Q Consensus 332 ~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~ 411 (562)
.+.++++++.||+||+++.++...... .......+|.+.+.. .+++.+. ++..++.+ .|||+|+|
T Consensus 305 ~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g 369 (517)
T 3r44_A 305 AAKNIEVVQGYALTESCGGGTLLLSED----------ALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKS 369 (517)
T ss_dssp HHTTCEEEEEEECGGGTTCEEEECGGG----------TTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEE
T ss_pred HhcCCcEEEeecccccccceeecCCcc----------ccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeC
Confidence 977999999999999987666542211 112234556666665 6777775 56665554 59999999
Q ss_pred hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535 412 NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491 (562)
Q Consensus 412 ~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 491 (562)
+.++.||+++|+.+.+.|.+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 370 ~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~ 449 (517)
T 3r44_A 370 DILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDE 449 (517)
T ss_dssp TTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred cchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
..++.++++| ..++...+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.|.++.
T Consensus 450 ~~g~~~~a~v-~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 450 KWGEIAAAIV-VADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp TTEEEEEEEE-EECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccCceEEEEE-ECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 8888888888 556666788999999999999999999988665 9999999999999999998753
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.8e-80 Score=648.34 Aligned_cols=520 Identities=32% Similarity=0.467 Sum_probs=398.3
Q ss_pred cccCCCCCChHHHHHHHHHHcCCceEEEE----CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535 13 ASANNVPLTPIDFLERAAHVYGDATSIIY----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF 88 (562)
Q Consensus 13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 88 (562)
..+...+.|+.++|+++++.+|+++|+.+ .++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus 11 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 11 STMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCBCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34445567999999999999999999994 45789999999999999999999999999999999999999999999
Q ss_pred HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535 89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN 168 (562)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++. ...++.++...
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~----------- 153 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT------VQHFVVMDEKA----------- 153 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS------CCEEEESSSCC-----------
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCC------ccEEEEecCCC-----------
Confidence 9999999999999999999999999999999999998877766554433211 22333333211
Q ss_pred CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHH--HhhcCCCCCCeeeeecc
Q 008535 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ--ISRCDVRDMPVFLWTLD 246 (562)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~--~~~~~~~~~~~~l~~~p 246 (562)
+.+...+.++....... ....++++++|+|||||||.||||.+||+++....... ...+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p 227 (541)
T 1v25_A 154 --PEGYLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 227 (541)
T ss_dssp --CTTCEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSC
T ss_pred --CcccccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEecc
Confidence 00123344443322211 23456899999999999999999999999987766552 34567889999999999
Q ss_pred cccchhhHHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChH
Q 008535 247 MFRCNGWCCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTI 325 (562)
Q Consensus 247 l~~~~gl~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~ 325 (562)
++|.+++...+.++..|+++++.+. +++..+++.++++++|+++++|+++..|++.......+++++|.+++||+++++
T Consensus 228 ~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 307 (541)
T 1v25_A 228 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPR 307 (541)
T ss_dssp TTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCH
T ss_pred chhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCH
Confidence 9999999777888999999998764 799999999999999999999999999998776556678999999999999999
Q ss_pred HHHHHHHhcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCcee
Q 008535 326 EVLEQVANFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG 405 (562)
Q Consensus 326 ~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~G 405 (562)
++.+.++.+++++++.||+||++++++............ ..........+|.|.++. .++|+|. ++++++.++++.|
T Consensus 308 ~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~G 384 (541)
T 1v25_A 308 SLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS-EEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALG 384 (541)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC-HHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCE
T ss_pred HHHHHHHHhCCceeecccccccccceecccccccccccC-ccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcce
Confidence 999999777999999999999987766543221100000 000112345678888777 7888886 6777776555679
Q ss_pred EEEEcchhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535 406 EVMFRANTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484 (562)
Q Consensus 406 el~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 484 (562)
||+|+||.++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 385 El~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 464 (541)
T 1v25_A 385 EVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAA 464 (541)
T ss_dssp EEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------C
T ss_pred EEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEE
Confidence 9999999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535 485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG 559 (562)
Q Consensus 485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~ 559 (562)
|++.+++..++.++++|++. +...+.+++++++++ +|+.|++|+.+.+++ ||+|++||++|++|++.|.+..+|
T Consensus 465 Vv~~~~~~~~~~~~a~vv~~-~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 465 VVAIPHPKWQERPLAVVVPR-GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYGG 540 (541)
T ss_dssp EEEEECSSSSEEEEECC--------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSCC
T ss_pred EEEecCCCcCceEEEEEEEC-CCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence 99999999899999999876 444567889999999 899999999888655 999999999999999999877665
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.3e-79 Score=635.03 Aligned_cols=501 Identities=23% Similarity=0.314 Sum_probs=424.2
Q ss_pred CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
+...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCC
Q 008535 97 LSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFP 171 (562)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
++|+++.++.+++.++++.++++++|++.... .........++. ...++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT------LKNIIVAGEAE-------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT------CCCEEEESCCT--------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCC------ccEEEEcCCcc--------------
Confidence 99999999999999999999999999987642 222222222111 22222222110
Q ss_pred CCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccch
Q 008535 172 SGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCN 251 (562)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~ 251 (562)
.+.++...... ........++|+++++|||||||.||||.++|+++..........+++.++|++++.+|++|.+
T Consensus 162 ----~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 236 (539)
T 1mdb_A 162 ----EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY 236 (539)
T ss_dssp ----TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred ----chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccc
Confidence 01111111111 1111234678999999999999999999999999999888888888999999999999999999
Q ss_pred hhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535 252 GWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE 329 (562)
Q Consensus 252 gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~ 329 (562)
++.. .+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+++++|.+++||+++++++.+
T Consensus 237 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~ 316 (539)
T 1mdb_A 237 PLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAAR 316 (539)
T ss_dssp HHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHT
T ss_pred hhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHH
Confidence 9874 78888999999999889999999999999999999999999999987765667789999999999999999999
Q ss_pred HHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEE
Q 008535 330 QVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVM 408 (562)
Q Consensus 330 ~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~ 408 (562)
+++ .+++++++.||+||++..+... ..........+|.|.++...++|+|. ++++++.| +.|||+
T Consensus 317 ~~~~~~~~~~~~~YG~TE~~~~~~~~-----------~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~ 382 (539)
T 1mdb_A 317 RVKAVFGCTLQQVFGMAEGLVNYTRL-----------DDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLL 382 (539)
T ss_dssp THHHHTCSEEEEEEECTTSCEEECCT-----------TSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEE
T ss_pred HHHHHhCCcEEEEEcCCCCcccccCC-----------CCcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEE
Confidence 998 5699999999999964322211 00111233567877766556888886 67777776 779999
Q ss_pred EcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEe
Q 008535 409 FRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVG 487 (562)
Q Consensus 409 v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 487 (562)
|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 383 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 462 (539)
T 1mdb_A 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVS 462 (539)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred eeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEe
Confidence 999999999999999999999 4899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhcc-CCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 488 KVDDQLKEVPVAFVKLKEGREASPEELVTFCGDE-LPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 488 ~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
.+++..++.++++|++.. ...+.++++++++++ ++.|++|+.+.+++ ||+|++||++|++|++.+.++.
T Consensus 463 ~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 463 MPDQFLGERSCVFIIPRD-EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ccccccCceEEEEEEECC-CCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 999988999999999873 456789999999997 99999999988665 9999999999999999987764
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5.2e-79 Score=631.48 Aligned_cols=491 Identities=22% Similarity=0.289 Sum_probs=420.4
Q ss_pred HHHHHHHHHcCCceEEE---ECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535 24 DFLERAAHVYGDATSII---YGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL 100 (562)
Q Consensus 24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (562)
++|++.++.+|++.++. +.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57889999999998877 456889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhhh
Q 008535 101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYNDL 180 (562)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (562)
++.++.+++.+++++++++++|++....+.+........ ..+..+.... ...+...
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~----------------~~~~~~~ 139 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG--------ATVETLGPDG----------------RGSLTDA 139 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT--------CEEEECCTTS----------------CSHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC--------ceEEEecCCc----------------ccccchh
Confidence 999999999999999999999999876655544433321 1222221111 0111111
Q ss_pred hhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HHHh
Q 008535 181 LEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TWAM 259 (562)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~~~ 259 (562)
....... .......++|+++|+|||||||.||||.++|+++..........+++.++|++++.+|++|.+|+.. .+.+
T Consensus 140 ~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 218 (503)
T 4fuq_A 140 AAGASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218 (503)
T ss_dssp HHTSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHH
T ss_pred hhcCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 1111111 1122356789999999999999999999999999999999989999999999999999999999764 6677
Q ss_pred HhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hcCCee
Q 008535 260 AAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NFGFNI 338 (562)
Q Consensus 260 ~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l 338 (562)
++.|+++++.+.+++..+++.++ ++|+++++|+++..|++........++++|.+++||++++++..+.|. .++.++
T Consensus 219 l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 296 (503)
T 4fuq_A 219 LFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAV 296 (503)
T ss_dssp HHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCE
T ss_pred HHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 88899999999999999999998 899999999999999998877777789999999999999999999998 559999
Q ss_pred eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535 339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY 418 (562)
Q Consensus 339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy 418 (562)
++.||+||++..+.... ........+|.|.++. .++|+|.+++++++.| +.|||+|+|++++.||
T Consensus 297 ~~~YG~TE~~~~~~~~~------------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY 361 (503)
T 4fuq_A 297 LERYGMTETNMNTSNPY------------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGY 361 (503)
T ss_dssp EECCEETTTEECBCCCS------------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCB
T ss_pred cceEcccccCcccccCC------------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhh
Confidence 99999999976543211 1112234577777777 8888887788888877 7799999999999999
Q ss_pred cCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCcee
Q 008535 419 FKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVP 497 (562)
Q Consensus 419 ~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~ 497 (562)
+++++.+.+.|. +|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.+
T Consensus 362 ~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~ 441 (503)
T 4fuq_A 362 WRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGV 441 (503)
T ss_dssp TTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEE
T ss_pred cCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCcee
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535 498 VAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 498 v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~ 556 (562)
+++|+..++...+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++.|.+.
T Consensus 442 ~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 442 TAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99999998888889999999999999999999988655 999999999999999998764
No 7
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.1e-79 Score=635.29 Aligned_cols=498 Identities=23% Similarity=0.343 Sum_probs=331.1
Q ss_pred CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535 16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA 95 (562)
Q Consensus 16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 95 (562)
..+++|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535 96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL 175 (562)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (562)
+++|+++.++.+++.+++++++++++|++....+.+......+.. ...++.+++.. .
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----------------~ 138 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG------VKKAYAIGDGS-----------------G 138 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSS------CCEEEESSCCC-----------------S
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCC------ceEEEEcCCCC-----------------c
Confidence 999999999999999999999999999999887765444332221 23334333211 1
Q ss_pred chhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHH
Q 008535 176 DYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC 255 (562)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~ 255 (562)
.+.++...............++|+++|+|||||||.||||.++|+++..........+++.++|++++.+|++|.+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~ 218 (509)
T 3ivr_A 139 PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGL 218 (509)
T ss_dssp SCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHH
T ss_pred ChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHH
Confidence 12222221111111223356789999999999999999999999999999999989999999999999999999999998
Q ss_pred HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535 256 TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF 334 (562)
Q Consensus 256 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~ 334 (562)
.+.+++.+++.++...+++..+++.++++++|+++++|+++..|++.. ....++++|.++.+|++ +..+.+. .+
T Consensus 219 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~ 293 (509)
T 3ivr_A 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATC 293 (509)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHC
T ss_pred HHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhc
Confidence 888888888888777899999999999999999999999999998876 44668899999999987 6677776 45
Q ss_pred -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535 335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413 (562)
Q Consensus 335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 413 (562)
++++++.||+||++++++...... ....+|.|.++. .++|+|. ++++++.| +.|||+|+|++
T Consensus 294 ~~~~~~~~YG~TE~~~~~~~~~~~~-------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~ 356 (509)
T 3ivr_A 294 PNATFWATFGQSETSGLSTFAPYRD-------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPT 356 (509)
T ss_dssp TTCEEEEEEEEGGGTEEEEEEEGGG-------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred CCCeEEcccCccccccccccCcccc-------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCC
Confidence 899999999999987766543211 112368887777 8888886 57877776 77999999999
Q ss_pred hhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccc--cceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCC
Q 008535 414 VMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRR--KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDD 491 (562)
Q Consensus 414 ~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 491 (562)
++.||+++++.+.+.|.+|||+|||+|++|+||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 357 ~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~ 436 (509)
T 3ivr_A 357 VFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDP 436 (509)
T ss_dssp SCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC---------------------------------------
T ss_pred ccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccc
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcc
Q 008535 492 QLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAV 558 (562)
Q Consensus 492 ~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~ 558 (562)
..++.++++|++.++...+.++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.+...
T Consensus 437 ~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 437 QWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 98999999999888777788899999999999999999887655 99999999999999999887653
No 8
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7e-78 Score=623.98 Aligned_cols=483 Identities=27% Similarity=0.356 Sum_probs=407.8
Q ss_pred CChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535 20 LTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL 97 (562)
Q Consensus 20 ~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (562)
+|+.++|+++++.+|+++|+.+. ++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 48999999999999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEE--eccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCC
Q 008535 98 SALNTRLDSATLASILRQLEAKIIFV--DYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSL 175 (562)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (562)
+|+++.++.+++.+++++++++++++ +....+.+.. ... ...++.+
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~-------~~~~~~~---------------------- 129 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGS-------GARIIFL---------------------- 129 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCC-------CCEEEEG----------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---ccc-------cceeEEe----------------------
Confidence 99999999999999999999999999 7664443311 111 0111111
Q ss_pred chhhhhhccc----CccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCC--CCCCeeeeeccccc
Q 008535 176 DYNDLLEMGK----ADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDV--RDMPVFLWTLDMFR 249 (562)
Q Consensus 176 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~l~~~pl~~ 249 (562)
.++..... ..........++++++|+|||||||.||||.++|+++..........+++ .+.+++++.+|++|
T Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 207 (504)
T 1t5h_X 130 --GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYH 207 (504)
T ss_dssp --GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTS
T ss_pred --cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhh
Confidence 11111100 00001123457899999999999999999999999999888887777887 88999999999999
Q ss_pred chhhH-HHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEEEeCCCChHH
Q 008535 250 CNGWC-CTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIVIAGVLPTIE 326 (562)
Q Consensus 250 ~~gl~-~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~~~g~~l~~~ 326 (562)
.+++. ..+.++..|+++++.+.+++..+++.++++++|+++++|++++.|++... .....++++|.+++||++++++
T Consensus 208 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~ 287 (504)
T 1t5h_X 208 VVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDA 287 (504)
T ss_dssp HHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHH
T ss_pred cchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHH
Confidence 99984 57788889999999999999999999999999999999999999988652 2345688999999999999999
Q ss_pred HHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc--ccccCCCCc
Q 008535 327 VLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM--KSVPHDGKT 403 (562)
Q Consensus 327 ~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~--~~~~~~~~~ 403 (562)
+.+.++ .++.++++.||+||++ .+.... .......|.|.++. .+++++.+.+ ++++.| +
T Consensus 288 ~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~ 349 (504)
T 1t5h_X 288 VLETVHQHLPGEKVNIYGTTEAM-NSLYMR--------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--E 349 (504)
T ss_dssp HHHHHHHHCCSEEEEEEEETTTE-EEEEEE--------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--C
T ss_pred HHHHHHHhcCcceeeeecccccc-cccccc--------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--C
Confidence 999998 5588999999999983 222111 11223556666666 7788776432 566655 7
Q ss_pred eeEEEEc-chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCcee
Q 008535 404 LGEVMFR-ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLE 482 (562)
Q Consensus 404 ~Gel~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~ 482 (562)
.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+
T Consensus 350 ~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 429 (504)
T 1t5h_X 350 EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTE 429 (504)
T ss_dssp CEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred cceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 7999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535 483 AAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN 554 (562)
Q Consensus 483 ~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~ 554 (562)
++|++.+++..++.++++|++.++...+.+++++++++ +|+.|++|+.+++++ ||+|++||++|++|++.|.
T Consensus 430 a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 430 VVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 99999999999999999999988777788999999998 999999999988765 9999999999999999875
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.5e-79 Score=640.03 Aligned_cols=505 Identities=22% Similarity=0.313 Sum_probs=335.8
Q ss_pred CCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535 16 NNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA 95 (562)
Q Consensus 16 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 95 (562)
.+...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 35568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535 96 VLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF 170 (562)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
+++|+++.++.+++.+++++++++++|++.... ............ ...++.+....
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------- 166 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLS------PEIILMLNHQA------------- 166 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCC------CSEEEEETCCT-------------
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccC------cceEEEecCCc-------------
Confidence 999999999999999999999999999998654 222222221111 12222222111
Q ss_pred CCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccc
Q 008535 171 PSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRC 250 (562)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~ 250 (562)
....+.++............+..++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 244 (544)
T 3o83_A 167 --TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHN 244 (544)
T ss_dssp --TSEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSH
T ss_pred --cccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceE
Confidence 012233333333222222234567899999999999999999999999999999999899999999999999999999
Q ss_pred hhhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHH
Q 008535 251 NGWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVL 328 (562)
Q Consensus 251 ~gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~ 328 (562)
+++.. .+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++........++++|.+++||+++++++.
T Consensus 245 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~ 324 (544)
T 3o83_A 245 FMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA 324 (544)
T ss_dssp HHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHH
T ss_pred eecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHH
Confidence 99874 7788889999999999999999999999999999999999999998877667789999999999999999999
Q ss_pred HHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535 329 EQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV 407 (562)
Q Consensus 329 ~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel 407 (562)
+.++ .+++++++.||+||++..+.... .........+|.|..+...++|+|. ++++++.| +.|||
T Consensus 325 ~~~~~~~~~~~~~~YG~TE~~~~~~~~~-----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl 390 (544)
T 3o83_A 325 RQVPEVLNCKLQQVFGMAEGLVNYTRLD-----------DSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEG--EIGML 390 (544)
T ss_dssp THHHHHHCSEEEEEEECTTSCEEECCTT-----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEE
T ss_pred HHHHHHhCCcEEeeeccccccceeecCC-----------CchhhccCCCceecCCCcEEEEECC-CCCCCCCC--CeeEE
Confidence 9998 45999999999999874433211 1112223466777533337888884 77888776 77999
Q ss_pred EEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535 408 MFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486 (562)
Q Consensus 408 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 486 (562)
+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 391 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv 470 (544)
T 3o83_A 391 ATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALV 470 (544)
T ss_dssp EEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------
T ss_pred EEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999 589999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~ 556 (562)
+.+++..++.++++|+..+ ...+.+++++++++ .++.|++|+.+.+++ ||+|++||++|++|++++.+.
T Consensus 471 ~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 471 AIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ------------------------------------------------------------------------
T ss_pred eccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 9999999999999998766 34567789999998 799999999888655 999999999999999998764
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1e-77 Score=627.93 Aligned_cols=504 Identities=21% Similarity=0.255 Sum_probs=426.4
Q ss_pred CChHH-HHHHHHHHcCCceEEEE--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 20 LTPID-FLERAAHVYGDATSIIY--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 20 ~ti~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
.|+.+ +|.++++.+ +++|+++ .++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 898889999 9999998 4688999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535 97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176 (562)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
++|+++.++.+++.+++++++++++|++....+.+......++. ...++.++.... ..+...
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~------------~~~~~~ 165 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTT------IKTIVILDSKVD------------YRGYQC 165 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTT------CCEEEETTCSSC------------BTTBCB
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCC------CCEEEEeCCccc------------cccccc
Confidence 99999999999999999999999999999887766554433221 123333332110 011234
Q ss_pred hhhhhhcccCc-cccCCCC-----CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCCeeeeeccc
Q 008535 177 YNDLLEMGKAD-FEMMQPN-----HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMPVFLWTLDM 247 (562)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~-----~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~~~l~~~pl 247 (562)
+.++....... ....... .++|+++|+|||||||.||||.+||+++.......... +++.++|++++.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 55554432111 1110111 23899999999999999999999999998887777666 678899999999999
Q ss_pred ccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHH
Q 008535 248 FRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEV 327 (562)
Q Consensus 248 ~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~ 327 (562)
+|.+++...+...+.|+++++.+.+++..+++.++++++|+++++|++++.|++........++++|.+++||+++++++
T Consensus 246 ~h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~ 325 (548)
T 2d1s_A 246 HHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEV 325 (548)
T ss_dssp TSHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHH
Confidence 99999876444434999999988899999999999999999999999999999877666667899999999999999999
Q ss_pred HHHHH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCcee
Q 008535 328 LEQVA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLG 405 (562)
Q Consensus 328 ~~~~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~G 405 (562)
.+.++ .+ +.++++.||+||+++.++..... ......+|.|.++. .++|++.+++++++.| +.|
T Consensus 326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~G 390 (548)
T 2d1s_A 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG------------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRG 390 (548)
T ss_dssp HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT------------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCE
T ss_pred HHHHHHHcCCCceeeccccccccceeeecCcc------------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCe
Confidence 99998 45 67899999999998766552110 11234667777776 7888886688888776 779
Q ss_pred EEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535 406 EVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484 (562)
Q Consensus 406 el~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 484 (562)
||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 391 El~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 470 (548)
T 2d1s_A 391 EVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470 (548)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEE
T ss_pred EEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEE
Confidence 999999999999999999999999 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCc-EEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
|++.+++..++.++++|+++++...+.++++++++++++.|++|+ .+.+++ ||+|++||++|++|++.+.+.-
T Consensus 471 V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i 545 (548)
T 2d1s_A 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPV 545 (548)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC
T ss_pred EEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhh
Confidence 999999988999999999988777788999999999999999999 777655 9999999999999999987654
No 11
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.9e-79 Score=642.20 Aligned_cols=513 Identities=21% Similarity=0.299 Sum_probs=335.2
Q ss_pred ccCCCCCChHHHHHHHHHHcCCceEEE---E--CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Q 008535 14 SANNVPLTPIDFLERAAHVYGDATSII---Y--GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHF 88 (562)
Q Consensus 14 ~~~~~~~ti~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 88 (562)
..+.+..|+.++|.++++.+|+++|++ + .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 14 FYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp SSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred CCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 455567899999999999999998875 4 35789999999999999999999999999999999999999999999
Q ss_pred HhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535 89 AVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN 168 (562)
Q Consensus 89 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+. ...++.++.....
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI------IQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT------CCEEEETTCSSCB---------
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC------cceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999888777766554432 2344444332110
Q ss_pred CCCCCCCchhhhhhcccC------ccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh---cCCCCCC
Q 008535 169 NFPSGSLDYNDLLEMGKA------DFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR---CDVRDMP 239 (562)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~---~~~~~~~ 239 (562)
.+..++.++...... .........++|+++|+|||||||.||||.+||+++.......... +++.+++
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 159 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 235 (550)
T ss_dssp ---TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ---cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence 122344444433221 1111122345789999999999999999999999998877766554 5688999
Q ss_pred eeeeecccccchhhHHHHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEe
Q 008535 240 VFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIA 319 (562)
Q Consensus 240 ~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~ 319 (562)
++++.+|++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......+++++|.+++|
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~g 315 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASG 315 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEe
Confidence 99999999999999988899999999999999999999999999999999999999999999887777789999999999
Q ss_pred CCCChHHHHHHHH-hcCCe-eeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccc
Q 008535 320 GVLPTIEVLEQVA-NFGFN-IRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSV 397 (562)
Q Consensus 320 g~~l~~~~~~~~~-~~~~~-l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 397 (562)
|+++++++.+.++ .++.. +++.||+||+++.++..... ......+|.|.++. .++|++.+++.++
T Consensus 316 G~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~------------~~~~~~vG~~~~~~-~~~i~d~~~~~~~ 382 (550)
T 3rix_A 316 GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG------------DDKPGAVGKVVPFF-EAKVVDLDTGKTL 382 (550)
T ss_dssp SSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT------------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred cCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC------------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence 9999999999998 56764 89999999998776654321 11234567777777 8888887788888
Q ss_pred cCCCCceeEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhc
Q 008535 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLS 476 (562)
Q Consensus 398 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 476 (562)
+.| +.|||+|+|++++.||+++++.+...| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.+
T Consensus 383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 776 779999999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCc-EEEe-ecccCCCCCcchHHHHhhhhh
Q 008535 477 NPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPR-AIFF-EDIPVNSTGKVQKFVLRGKVN 554 (562)
Q Consensus 477 ~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~-~~lP~t~~GKv~r~~l~~~~~ 554 (562)
+|+|.+++|++.+++..++.++++|++.++...+.++++++++++++.++.|. .+++ .+||+|++||++|++|++++.
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~ 540 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILI 540 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHH
Confidence 99999999999999999999999999888777788899999999999886554 4654 559999999999999999998
Q ss_pred hhccc
Q 008535 555 ATAVG 559 (562)
Q Consensus 555 ~~~~~ 559 (562)
+...+
T Consensus 541 ~~~~~ 545 (550)
T 3rix_A 541 KAKKG 545 (550)
T ss_dssp -----
T ss_pred hhccc
Confidence 76654
No 12
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.9e-77 Score=627.35 Aligned_cols=503 Identities=21% Similarity=0.243 Sum_probs=404.0
Q ss_pred CCChH-HHHHHHHHHcCCceEEEE-----CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535 19 PLTPI-DFLERAAHVYGDATSIIY-----GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM 92 (562)
Q Consensus 19 ~~ti~-~~l~~~a~~~p~~~a~~~-----~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 92 (562)
..|+. ++|+++++.+|+++|+++ .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 35666 999999999999999986 236899999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCCCHHHHHHHHhhCCceEEEEeccch--HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCC
Q 008535 93 AGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFV--EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNF 170 (562)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
+|++++|+++.++.+++.++++.++++++|++.+.. +.+......+... ...++.++...
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------------- 195 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI-----PLKKAKVGGDV------------- 195 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC-----CCEEEEESSSC-------------
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc-----ceEEEEeCCcc-------------
Confidence 999999999999999999999999999999988765 5555554443321 12233332211
Q ss_pred CCCCCchhhhhhcccCccccC---CCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccc
Q 008535 171 PSGSLDYNDLLEMGKADFEMM---QPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDM 247 (562)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl 247 (562)
..+..++.+............ ....++|+++|+|||||||.||||.++|.++..........+++.++++++...|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADS 275 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCT
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCCh
Confidence 123345555554433322221 23567899999999999999999999999988877776677788999999999999
Q ss_pred ccchhhHH-HHHhHhhceEEEEe--ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCCh
Q 008535 248 FRCNGWCC-TWAMAAVGGINVCI--RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPT 324 (562)
Q Consensus 248 ~~~~gl~~-~~~~~~~g~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~ 324 (562)
+|..++.. ++.++..|+++++. ..+++..+++.++++++|+++++|++++.|++. .....+++++|.+++||++++
T Consensus 276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence 99888764 56677788888777 468999999999999999999999999999886 334467899999999999999
Q ss_pred HHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCc
Q 008535 325 IEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKT 403 (562)
Q Consensus 325 ~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (562)
+++.++|. .+++++++.||+||++..++..... ......+|.|.++. .++|+|. ++++++.| +
T Consensus 355 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~ 418 (580)
T 3etc_A 355 PEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM------------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--E 418 (580)
T ss_dssp HHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS------------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--C
T ss_pred HHHHHHHHHHhCCeEecccccccccceeecCCCC------------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--C
Confidence 99999998 4699999999999997665543211 12234678888777 8888886 57887776 7
Q ss_pred eeEEEEcc-----hhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535 404 LGEVMFRA-----NTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478 (562)
Q Consensus 404 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 478 (562)
.|||+|+| +.++.||+++|+.+.+.|.+|||+|||+|++|+||.++++||.||+||++|.+|+|.+||++|.++|
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p 498 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 79999997 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhh
Q 008535 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVN 554 (562)
Q Consensus 479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~ 554 (562)
.|.+++|++.+++..++.++++|++.++.... .++|++++++.++.|++|+.+.+++ ||+|++||++|++|++++.
T Consensus 499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------------
T ss_pred CeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 99999999999999999999999998775444 3689999999999999999988655 9999999999999999886
Q ss_pred hh
Q 008535 555 AT 556 (562)
Q Consensus 555 ~~ 556 (562)
++
T Consensus 579 ~q 580 (580)
T 3etc_A 579 SQ 580 (580)
T ss_dssp --
T ss_pred cC
Confidence 53
No 13
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2e-76 Score=629.55 Aligned_cols=510 Identities=21% Similarity=0.281 Sum_probs=420.9
Q ss_pred ChHHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535 21 TPIDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94 (562)
Q Consensus 21 ti~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 94 (562)
++.++|+++++.+|+++|+++ .++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 467889999999999999997 33789999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCHHHHHHHHhhCCceEEEEeccch---------HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCccc
Q 008535 95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFV---------EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCS 165 (562)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (562)
++++|+++.++.+++.+++++++++++|+++... +.+.......... ....++.++......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vi~~~~~~~~~----- 227 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVT----SVEHVIVLKRTGSDI----- 227 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCC----SCCEEEEECSSCCCC-----
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcC----CCCEEEEEeCCCCcc-----
Confidence 9999999999999999999999999999987643 2333333221100 023344443221100
Q ss_pred ccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCeeeee
Q 008535 166 VANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFLWT 244 (562)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~~ 244 (562)
.........|.++....... ....+..++|+++|+|||||||.||||+++|+++..... .....+++.++|++++.
T Consensus 228 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 228 --DWQEGRDLWWRDLIEKASPE-HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp --CCCBTTEEEHHHHHTTSCSC-CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred --cccCCCceeHHHHHhhcCCC-CCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 00011123455555433221 112234578999999999999999999999999876654 44556889999999999
Q ss_pred cccccchhh-HHHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEEE
Q 008535 245 LDMFRCNGW-CCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVIIV 317 (562)
Q Consensus 245 ~pl~~~~gl-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i~ 317 (562)
.|++|.+++ ...+.++..|+++++.+. +++..+++.++++++|+++++|++++.|++... ....+++++|.++
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~ 384 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILG 384 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEE
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEE
Confidence 999999998 567888999999999864 589999999999999999999999999998764 2345689999999
Q ss_pred EeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCC
Q 008535 318 IAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNT 393 (562)
Q Consensus 318 ~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 393 (562)
+||++++++..+++. .++ +++++.||+||+++.++..... ........+|.|.++. .++|+|. +
T Consensus 385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~----------~~~~~~~s~G~p~~g~-~v~i~d~-~ 452 (652)
T 1pg4_A 385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG----------AIELKAGSATRPFFGV-QPALVDN-E 452 (652)
T ss_dssp EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT----------TCCBCTTCCBSBCTTC-CEEEECT-T
T ss_pred EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC----------CcCccCCccccCcCCC-eEEEECC-C
Confidence 999999999999998 566 8999999999998766543211 0112345678888887 8888886 6
Q ss_pred cccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhh---ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechH
Q 008535 394 MKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAF---RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSL 468 (562)
Q Consensus 394 ~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 468 (562)
+++++.+ +.|||+|+| |+++.|||++++.+...| .+|||+|||+|++|+||.+++.||.||+||++|.+|+|.
T Consensus 453 g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 530 (652)
T 1pg4_A 453 GHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA 530 (652)
T ss_dssp CCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHH
T ss_pred CCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence 7777765 789999999 789999999999888776 378999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCC---HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcc
Q 008535 469 EVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREAS---PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKV 544 (562)
Q Consensus 469 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv 544 (562)
+||++|.+||.|.+++|++.+++..++.++++|+++++...+ .++|+++++++++.|++|+.+.+++ ||+|++||+
T Consensus 531 eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 531 EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred HHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence 999999999999999999999998899999999998775544 5789999999999999999988665 999999999
Q ss_pred hHHHHhhhhhhh
Q 008535 545 QKFVLRGKVNAT 556 (562)
Q Consensus 545 ~r~~l~~~~~~~ 556 (562)
+|++|++++.++
T Consensus 611 ~R~~L~~~~~~~ 622 (652)
T 1pg4_A 611 MRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHTC
T ss_pred hHHHHHHHHhCC
Confidence 999999999876
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.7e-77 Score=617.80 Aligned_cols=494 Identities=18% Similarity=0.192 Sum_probs=413.5
Q ss_pred CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535 20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA 99 (562)
Q Consensus 20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (562)
||+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535 100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYND 179 (562)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
+++.++.+++.++++.+++++++++...... .. ...++.. ..+.+
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~--------~~~~~~~---------------------~~~~~ 125 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------DL--------PVRIVSE---------------------DNLKD 125 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CC--------SSEEEET---------------------HHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------cc--------ccceech---------------------hhhhh
Confidence 9999999999999999999999997542100 00 0000000 01111
Q ss_pred hhhcc-cCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535 180 LLEMG-KADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258 (562)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~ 258 (562)
+.... ...........++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 11111 11111122356789999999999999999999999999999998888999999999999999999999988899
Q ss_pred hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535 259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF 334 (562)
Q Consensus 259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~ 334 (562)
++..|+++++.+. +++..+++.++++++|++.++|+++..++.........++++|.+++||+++++++.+.+. .+
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~ 285 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERF 285 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHC
Confidence 9999999999876 7899999999999999999999999999988777777899999999999999999999998 45
Q ss_pred -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535 335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413 (562)
Q Consensus 335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 413 (562)
++++++.||+||+++.++....... .........+|.+.++. .+++++. ++.+++.| +.|||+|+||+
T Consensus 286 ~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 354 (512)
T 3fce_A 286 PKATIMNTYGPTEATVAVTGIHVTEE-------VLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPS 354 (512)
T ss_dssp TTCEEEEEECCGGGSSCSEEEECCHH-------HHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTT
T ss_pred CCCEEEeCcccChhhhheeeEEeccc-------cccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccc
Confidence 8899999999999877665322110 00111234566776666 7777775 67777776 77999999999
Q ss_pred hhhhhcCCchhhHhhhc----cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535 414 VMLGYFKNPKATEEAFR----NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489 (562)
Q Consensus 414 ~~~gy~~~~~~~~~~~~----~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 489 (562)
++.||+++++.+.+.|. +|||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 355 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (512)
T 3fce_A 355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIK 433 (512)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEE
T ss_pred cChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEe
Confidence 99999999999999983 569999999999 7999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCC----HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhcccc
Q 008535 490 DDQLKEVPVAFVKLKEGREAS----PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVGW 560 (562)
Q Consensus 490 ~~~~~~~~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~~ 560 (562)
+...++.++++|++.+..... .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.++...+
T Consensus 434 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~ 509 (512)
T 3fce_A 434 KGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH 509 (512)
T ss_dssp ETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred cCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence 988889999999987664433 2579999999999999999988665 9999999999999999998887543
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.7e-76 Score=612.16 Aligned_cols=490 Identities=18% Similarity=0.215 Sum_probs=419.6
Q ss_pred CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535 20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQ-LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS 98 (562)
Q Consensus 20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (562)
||+.++|+++++.+|+++|+.+.++++||+||+++++++|++|.+ .|.++||+|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 589999999999999999999999999999999999999999988 4889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535 99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN 178 (562)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
|+++.++.+++.++++.++++++|++...... ... .. .....+.
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~--------~~----------------------~~~~~~~ 124 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG--------QQ----------------------IQTVSAE 124 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC--------CS----------------------SCEEEHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc--------cc----------------------cceecHh
Confidence 99999999999999999999999997542100 000 00 0012223
Q ss_pred hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535 179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258 (562)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~ 258 (562)
++...............++++++|+|||||||.||||.+||+++..........+++.+++++++..|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 33332222222222356789999999999999999999999999999998888999999999999999999999988899
Q ss_pred hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535 259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF 334 (562)
Q Consensus 259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~ 334 (562)
++..|+++++.+. +++..+++.++++++|+++++|++++.++.........++++|.+++||++++++..+.+. .+
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~ 284 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERF 284 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHC
Confidence 9999999998875 6899999999999999999999999999988776777889999999999999999999998 45
Q ss_pred -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535 335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413 (562)
Q Consensus 335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 413 (562)
++++++.||+||+++.++....... .........+|.|.++. .++|+|. ++++++.| +.|||+|+|++
T Consensus 285 ~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~ 353 (511)
T 3e7w_A 285 PKAKIFNTYGPTEATVAVTSVEITND-------VISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPS 353 (511)
T ss_dssp TTCEEEECCCCGGGSSCSEEEEECHH-------HHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTT
T ss_pred CCcEEEeCcccchheeeeeEEecccc-------ccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCc
Confidence 8999999999999877665432110 00111223567777777 8888886 57888776 77999999999
Q ss_pred hhhhhcCCchhhHhhhc--cc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535 414 VMLGYFKNPKATEEAFR--NG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489 (562)
Q Consensus 414 ~~~gy~~~~~~~~~~~~--~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 489 (562)
++.||+++++.+.+.|. +| ||+|||+|++ +||.+++.||.||+||++|++|+|.+||++|.++|.|.+++|++.+
T Consensus 354 v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 432 (511)
T 3e7w_A 354 VSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQ 432 (511)
T ss_dssp SCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEC
T ss_pred cChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEc
Confidence 99999999999999983 44 8999999999 5999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCCCCCCC----HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 490 DDQLKEVPVAFVKLKEGREAS----PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 490 ~~~~~~~~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
++..++.+++++++.++.... .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.+..
T Consensus 433 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 433 PNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp SSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 888899999999988765444 3679999999999999999988765 9999999999999999988765
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-75 Score=613.26 Aligned_cols=481 Identities=19% Similarity=0.205 Sum_probs=405.5
Q ss_pred CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535 19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS 98 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (562)
..|+.++|+++++.+|+++|+++.++++||+||.+++.++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535 99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN 178 (562)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
|+++.++.+++.++++.++++++|++......+.. ... ...+..+.....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~------~~~~~~~~~~~~-------------------- 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQF------NGQVEIFEEDTI-------------------- 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCC------CSEEEECCCSTT--------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccc------cCceeeecchhh--------------------
Confidence 99999999999999999999999999875543321 110 111111111000
Q ss_pred hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535 179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258 (562)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~ 258 (562)
.... ......+..++|+++|+|||||||.||||++||+++..........+++.++|++++..|++|..++...+.
T Consensus 168 --~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 243 (563)
T 1amu_A 168 --KIRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 243 (563)
T ss_dssp --TTSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred --cccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHH
Confidence 0000 001112345789999999999999999999999999888888888889999999999999999999888888
Q ss_pred hHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcC
Q 008535 259 MAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFG 335 (562)
Q Consensus 259 ~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~ 335 (562)
++..|+++++.+. .++..+++.++++++|++.++|+++..|... .++++|.+++||+++++++.+.|++ .
T Consensus 244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~-~ 316 (563)
T 1amu_A 244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE-K 316 (563)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT-T
T ss_pred HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh-C
Confidence 9999999998865 6899999999999999999999999877532 4678999999999999999999986 3
Q ss_pred CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM 415 (562)
Q Consensus 336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~ 415 (562)
+++++.||+||++..++........ ......+|.|.++. .++|+|. ++++++.| +.|||+|+|++++
T Consensus 317 ~~~~~~YG~TE~~~~~~~~~~~~~~---------~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~ 383 (563)
T 1amu_A 317 VTYINAYGPTETTICATTWVATKET---------IGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLA 383 (563)
T ss_dssp SEEEEEECCGGGSSCSEEEECCSSC---------CCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCC
T ss_pred CeEEEEECcCHHhHhheeeeccccc---------CCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhC
Confidence 8999999999998766654321110 11234678887777 8888885 67777766 7899999999999
Q ss_pred hhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEee
Q 008535 416 LGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGK 488 (562)
Q Consensus 416 ~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 488 (562)
.||+++++.|.+.|. ++||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.
T Consensus 384 ~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~ 463 (563)
T 1amu_A 384 RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVH 463 (563)
T ss_dssp CEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred hhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEe
Confidence 999999999999984 3599999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535 489 VDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA 555 (562)
Q Consensus 489 ~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~ 555 (562)
+++..++.++++++... ..+.++++++++++|+.|++|+.+++++ ||+|++||++|++|++....
T Consensus 464 ~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 529 (563)
T 1amu_A 464 KDHQEQPYLCAYFVSEK--HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLT 529 (563)
T ss_dssp ECTTSCEEEEEEEEESS--CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCC
T ss_pred ecCCCCeEEEEEEEeCC--CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcccc
Confidence 99888899999998764 4678899999999999999999988765 99999999999999987643
No 17
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.3e-75 Score=618.99 Aligned_cols=501 Identities=23% Similarity=0.342 Sum_probs=422.4
Q ss_pred cCCCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhcc
Q 008535 15 ANNVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAG 94 (562)
Q Consensus 15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 94 (562)
.-+...|+.++|+++++ |+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567899999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCHHHHHHHHhhCCceEEEEeccch-----HHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535 95 AVLSALNTRLDSATLASILRQLEAKIIFVDYQFV-----EVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN 169 (562)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (562)
++++|+++.++.+++.++++++++++++++.... ............ ...+..+....
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------ 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSS------IRVVQLLNDSG------------ 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTT------CCEEEEETCCS------------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCc------cceeeeccccc------------
Confidence 9999999999999999999999999999998654 222222221111 12222221111
Q ss_pred CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeeccccc
Q 008535 170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFR 249 (562)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~ 249 (562)
...+.+........ ....+..++++++|+|||||||.||||+++|+++..........+++.+++++++.+|++|
T Consensus 162 ----~~~~~~~~~~~~~~-~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 162 ----EHNLQDAINHPAED-FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAH 236 (617)
T ss_dssp ----TTBHHHHHHSCCSS-CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ----ccchhhhhcccccc-cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchh
Confidence 12223333222221 1223356789999999999999999999999999999999888999999999999999999
Q ss_pred chhhHH--HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccc--ccccceEEEEEeCCCChH
Q 008535 250 CNGWCC--TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQ--NQLQRKVIIVIAGVLPTI 325 (562)
Q Consensus 250 ~~gl~~--~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~i~~~g~~l~~ 325 (562)
.+++.. .+.++..|+++++.+..++..+++.++++++|++.++|+++..|++...... ..++++|.+++||+++++
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~ 316 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSA 316 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCH
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCH
Confidence 998764 7888999999999988999999999999999999999999999987654332 368899999999999999
Q ss_pred HHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCce
Q 008535 326 EVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTL 404 (562)
Q Consensus 326 ~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 404 (562)
+..+++. .+++++++.||+||++..++... ..........|.|..+...+.|+|. ++++++.| +.
T Consensus 317 ~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~ 382 (617)
T 3rg2_A 317 TLAARIPAEIGCQLQQVFGMAEGLVNYTRLD-----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EV 382 (617)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEECCTT-----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CC
T ss_pred HHHHHHHHHhCCcEEEEeccCcceeecccCC-----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--Cc
Confidence 9999998 56999999999999875433211 1111223456777644447888885 67888877 77
Q ss_pred eEEEEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeE
Q 008535 405 GEVMFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEA 483 (562)
Q Consensus 405 Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~ 483 (562)
|||+|+|+++++||+++++.|.+.| .++||+|||+|++++||.++++||.||+||++|.+|+|.+||++|.++|+|.++
T Consensus 383 GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a 462 (617)
T 3rg2_A 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYA 462 (617)
T ss_dssp EEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEE
T ss_pred eEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEE
Confidence 9999999999999999999999999 589999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhc-cCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535 484 AVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGD-ELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 484 ~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~ 556 (562)
+|++.+++..++.++++++..+ ..+.+++++++++ .+|.|++|..+.+++ ||+|++||++|++|++.+.+.
T Consensus 463 ~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 463 ALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999999888899999999876 4678899999998 699999999988665 999999999999999987654
No 18
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.7e-75 Score=622.49 Aligned_cols=512 Identities=23% Similarity=0.295 Sum_probs=416.2
Q ss_pred ChHHHHHHHHHHcCCceEEEE------CCeeccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHHHHHHHHhhhc
Q 008535 21 TPIDFLERAAHVYGDATSIIY------GTVRFSWRQTHQICLKLASALA-QLKISRGDIVAAMAPNIPALYKLHFAVPMA 93 (562)
Q Consensus 21 ti~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 93 (562)
++.++|+++++.+|+++|+++ ..+++||+||.+++.++|+.|. ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 577899999999999999997 3478999999999999999999 999999999999999999999999999999
Q ss_pred cceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH---------HHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535 94 GAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE---------VVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC 164 (562)
Q Consensus 94 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (562)
|++++|+++.++.+++.+++++++++++|+++.... .+......++ ....++.++......
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vi~~~~~~~~~---- 232 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP------GVRHVLVYRKTNNPS---- 232 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT------TCCEEEEECSSCCSS----
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC------CCceEEEEecCCCCc----
Confidence 999999999999999999999999999999876532 2333222111 023344433211000
Q ss_pred cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHH-HHHhhcCCCCCCeeee
Q 008535 165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSL-AQISRCDVRDMPVFLW 243 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~-~~~~~~~~~~~~~~l~ 243 (562)
..........|.++....... ....+..++|+++|+|||||||.||||+++|+++..... .....+++.++|++++
T Consensus 233 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 233 --VAFHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFT 309 (663)
T ss_dssp --CCCCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEE
T ss_pred --cccCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 000011123455555432211 112234578999999999999999999999999876654 3455688999999999
Q ss_pred ecccccchhh-HHHHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc--cccccccceEEE
Q 008535 244 TLDMFRCNGW-CCTWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA--SDQNQLQRKVII 316 (562)
Q Consensus 244 ~~pl~~~~gl-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~i 316 (562)
..|++|.+++ ...+.++..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....+++++|.+
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i 389 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCL 389 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEE
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEE
Confidence 9999999998 457788999999998864 589999999999999999999999999988754 234568999999
Q ss_pred EEeCCCChHHHHHHHH-hcC---CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccC
Q 008535 317 VIAGVLPTIEVLEQVA-NFG---FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQN 392 (562)
Q Consensus 317 ~~~g~~l~~~~~~~~~-~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 392 (562)
++||++++++.++++. .++ +++++.||+||+++.++...... ........+|.|.++. .++|+|.+
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~i~d~~ 459 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG---------VTPMKPGSASFPFFGI-DAVVLDPN 459 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT---------CCCCCTTCCCEECTTC-CEEEECSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC---------CcccCCCccccCcCCC-eEEEEcCC
Confidence 9999999999999998 456 89999999999987665532100 0122345678888877 88888876
Q ss_pred CcccccCCCCceeEEEEcc--hhhhhhhcCCchhhHhhhc---cceeeeCceeEEcCCCcEEEeccccceeecCCeEech
Q 008535 393 TMKSVPHDGKTLGEVMFRA--NTVMLGYFKNPKATEEAFR---NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISS 467 (562)
Q Consensus 393 ~~~~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 467 (562)
++++++.. ++.|||+|+| |+++.|||++++.+.+.|. +|||+|||+|++|+||.+++.||.||+||++|.+|+|
T Consensus 460 ~g~~v~~~-g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 538 (663)
T 1ry2_A 460 TGEELNTS-HAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 538 (663)
T ss_dssp STTCEECS-SCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred CCCcCCCC-CcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence 78877761 2679999999 5899999999998888872 7899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCC---C-------CHHHHHHHHhccCCCCCCCcEEEeec-c
Q 008535 468 LEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGRE---A-------SPEELVTFCGDELPSCMVPRAIFFED-I 536 (562)
Q Consensus 468 ~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~---~-------~~~~l~~~~~~~l~~~~~p~~i~~~~-l 536 (562)
.+||++|.++|.|.+++|++.+++..++.++++|+++++.. . ..++|++++++++++|++|+.|.+++ |
T Consensus 539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 618 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence 99999999999999999999999888999999999887643 1 25789999999999999999988765 9
Q ss_pred cCCCCCcchHHHHhhhhhhh
Q 008535 537 PVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 537 P~t~~GKv~r~~l~~~~~~~ 556 (562)
|+|++||++|++|++++.++
T Consensus 619 P~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 619 PKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CBCTTSCBCHHHHHHSCC--
T ss_pred CCCCccCchHHHHHHHHcCC
Confidence 99999999999999999876
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.8e-75 Score=612.91 Aligned_cols=497 Identities=22% Similarity=0.274 Sum_probs=415.5
Q ss_pred ChHHHHHHHHHH-----cCCceEEEEC-----CeeccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCcHHHHHHHHH
Q 008535 21 TPIDFLERAAHV-----YGDATSIIYG-----TVRFSWRQTHQICLKLASALAQL-KISRGDIVAAMAPNIPALYKLHFA 89 (562)
Q Consensus 21 ti~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~~~~~~~~~~lA 89 (562)
++.++|+++++. +|+++|+.+. ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 356899999999 9999999872 37899999999999999999998 999999999999999999999999
Q ss_pred hhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCC
Q 008535 90 VPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANN 169 (562)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (562)
|+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+. ...++.++...
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~------------ 180 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS------LRIKLLVSEKS------------ 180 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTT------CCEEEEESSSC------------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCc------eeEEEEecccC------------
Confidence 999999999999999999999999999999999999887766654433221 22333332211
Q ss_pred CCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHH--HHHHHHhhcCCCCCCeeeeeccc
Q 008535 170 FPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYL--NSLAQISRCDVRDMPVFLWTLDM 247 (562)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~l~~~pl 247 (562)
..+...+.++........ ......++|+++|+|||||||.||||.++|+ ++. ..... ..+++.++|+++...|+
T Consensus 181 -~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~ 256 (570)
T 3c5e_A 181 -CDGWLNFKKLLNEASTTH-HCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDT 256 (570)
T ss_dssp -CTTSEEHHHHHHHSCSCC-CCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCT
T ss_pred -ccccccHHHHhhcccccc-cccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCch
Confidence 012234555444332211 1123457899999999999999999999999 544 33333 66788999999999999
Q ss_pred ccchhhH-HHHHhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCCh
Q 008535 248 FRCNGWC-CTWAMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPT 324 (562)
Q Consensus 248 ~~~~gl~-~~~~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~ 324 (562)
+|.+++. ..+.++..|+++++.+ .+++..+++.++++++|+++++|++++.|++.. ....+++++|.+++||++++
T Consensus 257 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~ 335 (570)
T 3c5e_A 257 GWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLL 335 (570)
T ss_dssp TSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCC
Confidence 9999987 5777888999998876 689999999999999999999999999998763 23346789999999999999
Q ss_pred HHHHHHHH-hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCc
Q 008535 325 IEVLEQVA-NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKT 403 (562)
Q Consensus 325 ~~~~~~~~-~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 403 (562)
++..+.|+ .+++++++.||+||++..++..... ......+|.|.++. .++|+|. ++++++.| +
T Consensus 336 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~------------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~ 399 (570)
T 3c5e_A 336 PETLENWRAQTGLDIRESYGQTETGLTCMVSKTM------------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--T 399 (570)
T ss_dssp HHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS------------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--C
T ss_pred HHHHHHHHHHhCCchhhccchhhcccceecCccc------------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--C
Confidence 99999998 4699999999999998654432110 11234678887777 8888886 57787776 7
Q ss_pred eeEEEEc-----chhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCC
Q 008535 404 LGEVMFR-----ANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNP 478 (562)
Q Consensus 404 ~Gel~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 478 (562)
.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||.+++.||.||+||++|++|+|.+||++|.++|
T Consensus 400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p 479 (570)
T 3c5e_A 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479 (570)
T ss_dssp CEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred CCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 7999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEeeeCCCCCceeEEEEEeCCCCC--C---CHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535 479 KVLEAAVVGKVDDQLKEVPVAFVKLKEGRE--A---SPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK 552 (562)
Q Consensus 479 ~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~--~---~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~ 552 (562)
+|.+++|++.+++..++.++++|++.++.. . ..++|+++++++++.|++|+.+.+++ ||+|++||++|++|++.
T Consensus 480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred CcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence 999999999999988999999999876531 1 25789999999999999999988655 99999999999999998
Q ss_pred hhhh
Q 008535 553 VNAT 556 (562)
Q Consensus 553 ~~~~ 556 (562)
+.+.
T Consensus 560 ~~~~ 563 (570)
T 3c5e_A 560 EWKM 563 (570)
T ss_dssp HTC-
T ss_pred HHhh
Confidence 7654
No 20
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.4e-76 Score=610.79 Aligned_cols=497 Identities=22% Similarity=0.301 Sum_probs=387.1
Q ss_pred CChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEe
Q 008535 20 LTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSA 99 (562)
Q Consensus 20 ~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (562)
+||.++|+++++.+|+++|+++.++++||+||.+++.++|++|.+. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCC-CCchh
Q 008535 100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSG-SLDYN 178 (562)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 178 (562)
+++.++.+++.++++.++++++|++............. . . ...+......... ........ .....
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL-D-D-----IEFAGRDITTNGL------LDNTMGIQYDTSNE 144 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET-T-C--------------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc-c-c-----ceeeeeecccccc------cccccccccccchh
Confidence 99999999999999999999999987654322110000 0 0 0000000000000 00000000 00000
Q ss_pred hhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHH
Q 008535 179 DLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWA 258 (562)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~ 258 (562)
.................++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++|.+|+...+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 224 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR 224 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHH
Confidence 11111111111122356789999999999999999999999999999998888999999999999999999999998889
Q ss_pred hHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCee
Q 008535 259 MAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNI 338 (562)
Q Consensus 259 ~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l 338 (562)
++..|+++++.+.+++..+++.++++++|+++++|++++.|++...... .++|.+++||++++++..+.+.++++++
T Consensus 225 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 301 (501)
T 3ipl_A 225 AVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQYNLPI 301 (501)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHTTCCE
T ss_pred HHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHhCCCE
Confidence 9999999999999999999999999999999999999999988764332 2899999999999999999998889999
Q ss_pred eccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhh
Q 008535 339 RHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGY 418 (562)
Q Consensus 339 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy 418 (562)
++.||+||+++.++.... .........+|.|.++. .+++++.+. ++.|||+|+|+.++.||
T Consensus 302 ~~~YG~TE~~~~~~~~~~----------~~~~~~~~~~G~p~~~~-~~~i~d~~~--------~~~GEl~v~g~~~~~gY 362 (501)
T 3ipl_A 302 YNSFGMTETCSQFLTATP----------EMLHARPDTVGMPSANV-DVKIKNPNK--------EGHGELMIKGANVMNGY 362 (501)
T ss_dssp EEEEEEGGGTEEEEEECH----------HHHHHCTTCCBEECTTC-EEEEESCCS--------SCCEEEEEESTTSCSCC
T ss_pred eccccccccccceeecCc----------cccccCCCCCCCCCCCc-EEEEecCCC--------CCccEEEEeccchhhhh
Confidence 999999999765544321 11122334567777776 777777541 25699999999999999
Q ss_pred cCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeE
Q 008535 419 FKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPV 498 (562)
Q Consensus 419 ~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v 498 (562)
+++++.+.. |.+|||+|||+|++|+||++++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++
T Consensus 363 ~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~ 441 (501)
T 3ipl_A 363 LYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPK 441 (501)
T ss_dssp SBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEE
T ss_pred CcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEE
Confidence 999998887 8899999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 499 AFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 499 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
++++.. ...+.++++++++++++.|++|+.+.+++ ||+|++||++|++|++...+..
T Consensus 442 a~v~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 442 LYFVSE--SDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp EEEEES--SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred EEEEeC--CCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 999864 34678999999999999999999988665 9999999999999999887654
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.4e-75 Score=610.03 Aligned_cols=490 Identities=20% Similarity=0.218 Sum_probs=403.1
Q ss_pred CCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEE
Q 008535 19 PLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLS 98 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (562)
..|+.++|+++++.+|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCchh
Q 008535 99 ALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDYN 178 (562)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
|+++.++.+++.++++.++++++|++.+....+. ...+ ..+.
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------------~~~~------------------------~~~~ 124 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------------GISL------------------------VSLS 124 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------------TSEE------------------------EEHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCccccccc--------------cCcc------------------------cchh
Confidence 9999999999999999999999999875421100 0000 1111
Q ss_pred hhhhc--ccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh--cCCCCCCeeeeecccccchhhH
Q 008535 179 DLLEM--GKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--CDVRDMPVFLWTLDMFRCNGWC 254 (562)
Q Consensus 179 ~~~~~--~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~--~~~~~~~~~l~~~pl~~~~gl~ 254 (562)
++... ............++|+++|+|||||||.||||++||+++.....+.... +.+...++++...|++|..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 11111 0111112233567899999999999999999999999998877766655 6788999999999999999988
Q ss_pred HHHHhHhhceEEEEeccC---CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHH
Q 008535 255 CTWAMAAVGGINVCIRTV---SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQV 331 (562)
Q Consensus 255 ~~~~~~~~g~~~v~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~ 331 (562)
..+.++..|+++++.+.. ++..+++.+.+++++++.++|+++..++.........++++|.+++||++++++..+.+
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~ 284 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKL 284 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHH
Confidence 888889999999988754 89999999999999999999999999988877667788999999999999999999998
Q ss_pred H-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEE
Q 008535 332 A-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMF 409 (562)
Q Consensus 332 ~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v 409 (562)
. .+ ++++++.||+||+++.++....... .........+|.|.++. .++|+|. ++.+++.| +.|||+|
T Consensus 285 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v 353 (521)
T 3l8c_A 285 FERFPSAKIINAYGPTEATVALSAIEITRE-------MVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIV 353 (521)
T ss_dssp HHHCTTCEEEEEECCGGGSSCSEEEEECHH-------HHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEE
T ss_pred HHHCCCceEEeCcCccHHhhhhceeecccc-------cccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEe
Confidence 7 45 8999999999999877665432110 00111223577777777 8888885 67777776 7799999
Q ss_pred cchhhhhhhcCCchhhHhhh----ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535 410 RANTVMLGYFKNPKATEEAF----RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485 (562)
Q Consensus 410 ~~~~~~~gy~~~~~~~~~~~----~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 485 (562)
+||+++.||+++++.+.+.| .+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|.|.+++|
T Consensus 354 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~v 433 (521)
T 3l8c_A 354 TGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVA 433 (521)
T ss_dssp ESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEE
T ss_pred cccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEE
Confidence 99999999999999999998 36799999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCC-CCceeEEEEEeCCCCCCC-------HHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535 486 VGKVDDQ-LKEVPVAFVKLKEGREAS-------PEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 486 ~~~~~~~-~~~~~v~~v~~~~~~~~~-------~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~ 556 (562)
++.++.. .++.++++|++.++.... .++++++++++++.|++|+.+.+++ ||+|++||++|++|++.+.++
T Consensus 434 v~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 434 VPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp ECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred EEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 9887544 457899999988764321 5789999999999999999988765 999999999999999998876
Q ss_pred c
Q 008535 557 A 557 (562)
Q Consensus 557 ~ 557 (562)
.
T Consensus 514 ~ 514 (521)
T 3l8c_A 514 E 514 (521)
T ss_dssp -
T ss_pred C
Confidence 5
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.9e-76 Score=621.87 Aligned_cols=481 Identities=21% Similarity=0.230 Sum_probs=315.9
Q ss_pred CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535 18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL 97 (562)
Q Consensus 18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (562)
...++.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535 98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY 177 (562)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
+|+++.++.+++.++++++++++++++......+.. ...+...+...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~-------------------- 199 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG-------------TTTLYVEDEAA-------------------- 199 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS-------------SEEEECCC-----------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC-------------Ccceeeecccc--------------------
Confidence 999999999999999999999999999764321100 01111110000
Q ss_pred hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535 178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257 (562)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~ 257 (562)
.............++|+++|+|||||||.||||++||+++...... ...+++.++++++..+|++|..+....+
T Consensus 200 -----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 200 -----SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHH
T ss_pred -----ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHH
Confidence 0000011112346789999999999999999999999998765544 4556788999999999999888877888
Q ss_pred HhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535 258 AMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF 334 (562)
Q Consensus 258 ~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~ 334 (562)
.++..|+++++.+ .+++..+++.++++++|++.++|++++.|++... ..++++|.+++||++++.+..+.+. .+
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 350 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDH 350 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhC
Confidence 8999999999876 4789999999999999999999999999987643 4588999999999999998888887 44
Q ss_pred -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535 335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413 (562)
Q Consensus 335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 413 (562)
++++++.||+||++++++....... ........+|.|.++. .++|+|. ++++++.| +.|||+|+|++
T Consensus 351 ~~~~l~~~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~ 418 (570)
T 4gr5_A 351 PALRLGNGYGPAESMGFTTHHAVVAG--------DLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAG 418 (570)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCGG--------GTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETT
T ss_pred CCcEEEEeechhhheeeeeeeeeccc--------ccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecc
Confidence 7899999999999877665432111 1111224578888777 8888885 67777776 78999999999
Q ss_pred hhhhhcCCchhhHhhhc---------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535 414 VMLGYFKNPKATEEAFR---------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484 (562)
Q Consensus 414 ~~~gy~~~~~~~~~~~~---------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 484 (562)
++.||+++++.+.+.|. +|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|.|.+++
T Consensus 419 v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~ 498 (570)
T 4gr5_A 419 LAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAA 498 (570)
T ss_dssp CCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------
T ss_pred cchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEE
Confidence 99999999999999984 279999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceeEEEEEeCCC-CCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhh
Q 008535 485 VVGKVDDQLKEVPVAFVKLKEG-REASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGK 552 (562)
Q Consensus 485 v~~~~~~~~~~~~v~~v~~~~~-~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~ 552 (562)
|++.+++.+++.++++|+..+. ...+.++|+++++++++.|++|+.+++++ ||+|++||++|++|++.
T Consensus 499 Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 499 VLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 9999988888999999987654 34567899999999999999999887655 99999999999999864
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.9e-74 Score=602.31 Aligned_cols=495 Identities=24% Similarity=0.296 Sum_probs=401.3
Q ss_pred ChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec
Q 008535 21 TPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL 100 (562)
Q Consensus 21 ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (562)
++.++|+++++ +|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 48899999999 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCC-CceeccCCCCCCCCCcccccCCCCCCCCchhh
Q 008535 101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKA-PLLVTIPECDHYQPSTCSVANNFPSGSLDYND 179 (562)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
++.++.+++.+++++++++++|++....+.+......... . ..++.++..... ......+.+
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-----------~~~~~~~~~ 166 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH------DGCQLIVSQPRESE-----------PRLAPLFEE 166 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---------CCEEEEECC-----------------CCCBHHH
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc------cCceEEEecccccc-----------cccccchhh
Confidence 9999999999999999999999998877665554332110 1 222222211100 001123444
Q ss_pred hhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhH-HHHHHHHHhhcCCCCCCeeeeecccccchhhHH-HH
Q 008535 180 LLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGA-YLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCC-TW 257 (562)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~-~~ 257 (562)
+........ ...+..++|+++++|||||||.||||.+||+++ ..........+++.++|++++.+|++|.+++.. .+
T Consensus 167 ~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~ 245 (529)
T 2v7b_A 167 LIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLT 245 (529)
T ss_dssp HHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTH
T ss_pred hhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHH
Confidence 443222111 122356789999999999999999999999998 555555555678899999999999999999875 56
Q ss_pred HhHhhceEEEEe-ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh-cC
Q 008535 258 AMAAVGGINVCI-RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN-FG 335 (562)
Q Consensus 258 ~~~~~g~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~ 335 (562)
.++..|+++++. +.+++..+++.++++++|+++++|+++..|+...........++|.+++||+++++++.+.+++ ++
T Consensus 246 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g 325 (529)
T 2v7b_A 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG 325 (529)
T ss_dssp HHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS
T ss_pred HHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC
Confidence 678889998877 5689999999999999999999999999998865443332348999999999999999999984 69
Q ss_pred CeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhh
Q 008535 336 FNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVM 415 (562)
Q Consensus 336 ~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~ 415 (562)
+++++.||+||++.+++...... .....+|.|.++. .++|+|. ++++++.| +.|||+|+|++++
T Consensus 326 ~~i~~~YG~TE~~~~~~~~~~~~------------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~ 389 (529)
T 2v7b_A 326 CEILDGIGSTEMLHIFLSNRAGA------------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAA 389 (529)
T ss_dssp CCEEEEEECTTTSSEEEECCTTC------------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCC
T ss_pred CceeeeEchhhcCceeeccccCC------------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcc
Confidence 99999999999976655432110 1234667777777 7888885 67887766 7799999999999
Q ss_pred hhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCc
Q 008535 416 LGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKE 495 (562)
Q Consensus 416 ~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~ 495 (562)
.||+++++.+...|.+|||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++
T Consensus 390 ~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~ 468 (529)
T 2v7b_A 390 VMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLV 468 (529)
T ss_dssp CCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEE
T ss_pred cccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 656678
Q ss_pred eeEEEEEeCCCCCC---CHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535 496 VPVAFVKLKEGREA---SPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG 551 (562)
Q Consensus 496 ~~v~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~ 551 (562)
.++++|++.++... ..++++++++++++.|++|+.+.+++ ||+|++||++|++|++
T Consensus 469 ~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 469 KTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 89999998765432 24689999999999999999988655 9999999999999986
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3e-74 Score=607.54 Aligned_cols=477 Identities=15% Similarity=0.142 Sum_probs=389.7
Q ss_pred CCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535 18 VPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL 97 (562)
Q Consensus 18 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (562)
...|+.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~ 104 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHY 104 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535 98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY 177 (562)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
+|++|.++.+++.++++++++++++++......... ..... +.
T Consensus 105 vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~-------------~~~~~-~~----------------------- 147 (620)
T 4dg8_A 105 LYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANG-------------LPCVP-VR----------------------- 147 (620)
T ss_dssp EECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTT-------------SCEEE-GG-----------------------
T ss_pred EeeCccChHHHHHHHHHhCCCcEEEecCcccccccC-------------Cceee-ec-----------------------
Confidence 999999999999999999999999976542210000 00000 00
Q ss_pred hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHH
Q 008535 178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTW 257 (562)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~ 257 (562)
... . ...........++|+++|+|||||||.||||+++|+++...... ...+.+.++++++...|++|..++...+
T Consensus 148 -~~~-~-~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 148 -HLP-A-APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp -GCC-C-CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred -cCC-c-CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 000 0 00001111245789999999999999999999999998766554 4567889999999999999999999999
Q ss_pred HhHhhceEEEEec--cCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHH-hc
Q 008535 258 AMAAVGGINVCIR--TVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVA-NF 334 (562)
Q Consensus 258 ~~~~~g~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~-~~ 334 (562)
.++..|+++++.+ .+++..+.+.++++++|+++++|++++.|++.. ...++++|.+++|||+++.+..+.+. .+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 300 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRH 300 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhC
Confidence 9999999998864 579999999999999999999999999998643 34688999999999999988887776 44
Q ss_pred -CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchh
Q 008535 335 -GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANT 413 (562)
Q Consensus 335 -~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 413 (562)
++++++.||+||++..++....... ........+|.|.++. .++|+|.+....++.| +.|||+|+|++
T Consensus 301 ~~~~l~n~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~ 369 (620)
T 4dg8_A 301 PRLHLVNGYGPTENTTFTCCHVVTDD--------DLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAG 369 (620)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCTG--------GGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETT
T ss_pred CCeEEEeeEchhhhhhheEEEecccc--------ccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccc
Confidence 8899999999999877665432211 1112234678888777 8888886433335555 77999999999
Q ss_pred hhhhhcCCchhhHhhhcc--------ceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEE
Q 008535 414 VMLGYFKNPKATEEAFRN--------GWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAV 485 (562)
Q Consensus 414 ~~~gy~~~~~~~~~~~~~--------g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 485 (562)
+++||+++++.|.+.|.+ +||+|||+|++++||.++++||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 999999999999999954 799999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhh
Q 008535 486 VGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNAT 556 (562)
Q Consensus 486 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~ 556 (562)
++.++...++.+ ++++... ++++++++++||.|++|+.+++++ ||+|++||++|++|++.+.+.
T Consensus 450 v~~~~~~~~~lv-~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 450 LVRERNGVKQLL-CAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEEEETTEEEEE-EEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred EEEeCCCceEEE-EEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 998887544444 4444322 234456677899999999988655 999999999999999887654
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.1e-75 Score=650.86 Aligned_cols=512 Identities=23% Similarity=0.360 Sum_probs=341.2
Q ss_pred CCChHHHHHHHHHHcCCceEEEEC--CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 19 PLTPIDFLERAAHVYGDATSIIYG--TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
..|+.++|+++++.+|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 479999999999999999999986 678999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535 97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176 (562)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
++|++|.++.+++.+++++++++++|++....+.+....... ...++.++..... ..+.+...
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---------~~~~~~~~ 202 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--------GVVIVCIDDNESV---------PIPEGCLR 202 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--------CCEEEECCCCTTS---------CCCTTEEE
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--------CceEEEeCCcccc---------cCCccccc
Confidence 999999999999999999999999999988766655543321 1223333322110 01112233
Q ss_pred hhhhhhcccCc--cccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh----hcCCCCCCeeeeecccccc
Q 008535 177 YNDLLEMGKAD--FEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS----RCDVRDMPVFLWTLDMFRC 250 (562)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~l~~~pl~~~ 250 (562)
+.++....... .....+..++|+++|+|||||||.||||+++|+++......... .+.+.++|++++.+|++|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 282 (979)
T 3tsy_A 203 FTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 282 (979)
T ss_dssp GGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSH
T ss_pred HHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHH
Confidence 44443322211 11222356789999999999999999999999999887766544 3567889999999999999
Q ss_pred hhhHH-HHHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHH
Q 008535 251 NGWCC-TWAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLE 329 (562)
Q Consensus 251 ~gl~~-~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~ 329 (562)
+++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......+++++|.+++||+++++++.+
T Consensus 283 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 362 (979)
T 3tsy_A 283 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELED 362 (979)
T ss_dssp HHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHH
T ss_pred HHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHH
Confidence 99864 67778899999999999999999999999999999999999999998877777899999999999999999999
Q ss_pred HHH-hc-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEE
Q 008535 330 QVA-NF-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEV 407 (562)
Q Consensus 330 ~~~-~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel 407 (562)
+++ .+ ++++++.||+||++++++.+..... .........+|.|.++. .++|+|.+++.+++.| +.|||
T Consensus 363 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl 432 (979)
T 3tsy_A 363 AVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK-------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEI 432 (979)
T ss_dssp HHHHHCTTCEEEECEECGGGCSEEEECGGGSS-------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEE
T ss_pred HHHHHCCCCeEEeeechhhhhHHHHhCCCCCC-------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEE
Confidence 998 45 8999999999999877655421111 11122335678888877 8889988788888877 67999
Q ss_pred EEcchhhhhhhcCCchhhHhhh-ccceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEE
Q 008535 408 MFRANTVMLGYFKNPKATEEAF-RNGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVV 486 (562)
Q Consensus 408 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 486 (562)
+|+|+.++.||+++|+.+.+.| .+|||+|||+|++|+||+++++||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 433 ~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv 512 (979)
T 3tsy_A 433 CIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVV 512 (979)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------
T ss_pred EEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEE
Confidence 9999999999999999999999 589999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhc
Q 008535 487 GKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATA 557 (562)
Q Consensus 487 ~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~ 557 (562)
+.+++..++.++++|+..++...+.++++++++++++.|++|+.+++++ ||+|++||++|++|++.+.+..
T Consensus 513 ~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 513 AMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 9999888999999999887777788899999999999999999887655 9999999999999999987643
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.2e-74 Score=595.47 Aligned_cols=473 Identities=25% Similarity=0.307 Sum_probs=382.5
Q ss_pred CCChHHHHHHHHHHcCC-ceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceE
Q 008535 19 PLTPIDFLERAAHVYGD-ATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVL 97 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (562)
-.|+.++|.++++.+|+ ++|+++.++++||+||.+++.++|.+|. .|++|+++++|+++++++++||+++|+++
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 34788999999999887 9999999999999999999999998875 38899999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCch
Q 008535 98 SALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLDY 177 (562)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (562)
+|+++.++.+++.+++++++++++|++...... .... ....+.+...
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~-------~~~~~~~~~~--------------------- 142 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PALG-------ALERVDVDVR--------------------- 142 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGGT-------TSEEEECCTT---------------------
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhhc-------cccccccccc---------------------
Confidence 999999999999999999999999998652100 0000 0001111000
Q ss_pred hhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhH-HH
Q 008535 178 NDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWC-CT 256 (562)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~-~~ 256 (562)
...........++|+++|+|||||||.||||+++|+++..........+++.++|++++.+|++|.+|+. ..
T Consensus 143 -------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 215 (505)
T 3nyq_A 143 -------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215 (505)
T ss_dssp -------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTT
T ss_pred -------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHH
Confidence 0000111234578999999999999999999999999999999888899999999999999999999986 47
Q ss_pred HHhHhhceEEEEeccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccc---ccccccceEEEEEeCCCChHHHHHHHH-
Q 008535 257 WAMAAVGGINVCIRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASAS---DQNQLQRKVIIVIAGVLPTIEVLEQVA- 332 (562)
Q Consensus 257 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~l~~i~~~g~~l~~~~~~~~~- 332 (562)
+.++..|+++++.+.+++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++||++++.+..+++.
T Consensus 216 ~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~ 294 (505)
T 3nyq_A 216 LGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA 294 (505)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHH
Confidence 8888999999999999999999999 88999999999999999875322 234578899999999999999999998
Q ss_pred hcCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccC-CCCceeEEEEcc
Q 008535 333 NFGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPH-DGKTLGEVMFRA 411 (562)
Q Consensus 333 ~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~-~~~~~Gel~v~~ 411 (562)
.++.++++.||+||++..++.... .......+|.|.++. .++|+|. ++.+++. ++++.|||+|+|
T Consensus 295 ~~~~~~~~~YG~TE~~~~~~~~~~------------~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g 360 (505)
T 3nyq_A 295 ATGRRVIERYGMTETLMNTSVRAD------------GEPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRG 360 (505)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTT------------SCCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEES
T ss_pred hcCCeeecccchhhcccccccCCC------------CCCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEec
Confidence 569999999999999765544221 112234678887777 7888886 5666665 334789999999
Q ss_pred hhhhhhhcCCchhhHhhhc-cceeeeCceeEEcCCCcEEEeccc-cceeecCCeEechHHHHHHHhcCCCceeEEEEeee
Q 008535 412 NTVMLGYFKNPKATEEAFR-NGWYHTGDLAVRNPDGYVQMKDRR-KDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKV 489 (562)
Q Consensus 412 ~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 489 (562)
++++.||+++++.+.+.|. +|||+|||+|++|+||.+++.||. ||+||++|.+|+|.+||++|.++|+|.+++|++.+
T Consensus 361 ~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~ 440 (505)
T 3nyq_A 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP 440 (505)
T ss_dssp TTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeE
Confidence 9999999999999999995 899999999999999999999998 58999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEeCC-CCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhh
Q 008535 490 DDQLKEVPVAFVKLKE-GREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRG 551 (562)
Q Consensus 490 ~~~~~~~~v~~v~~~~-~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~ 551 (562)
++..++.++++|++.+ ....+.++++++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 441 ~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 441 DPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp ETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999876 345678899999999999999999988655 9999999999999986
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.4e-73 Score=599.17 Aligned_cols=507 Identities=16% Similarity=0.139 Sum_probs=405.9
Q ss_pred CCCCChHHHHHHHHHHcCCceEEEEC----CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhh
Q 008535 17 NVPLTPIDFLERAAHVYGDATSIIYG----TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPM 92 (562)
Q Consensus 17 ~~~~ti~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 92 (562)
.+.+|+.++|+++++.+|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 35679999999999999999999873 47899999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCCC---HHHHHHHHhhCCceEEEEeccchHHHHHHH-hhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535 93 AGAVLSALNTRLD---SATLASILRQLEAKIIFVDYQFVEVVQNAL-DILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN 168 (562)
Q Consensus 93 ~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
+|++++|+++..+ .+++.++++.+++++++++.+....+.... ..... ...+..+
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~------~~~~~~~--------------- 146 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK------FLKIPAI--------------- 146 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE------ETTEEEE---------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc------cccccee---------------
Confidence 9999999999884 578999999999999999977554433211 00000 0000000
Q ss_pred CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccc
Q 008535 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMF 248 (562)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~ 248 (562)
....+.... ..........++|+++|+|||||||.||||.+||+++..........+++.++|++++.+|++
T Consensus 147 -------~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~ 218 (590)
T 3kxw_A 147 -------ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPH 218 (590)
T ss_dssp -------EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -------echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCC
Confidence 000100000 111112235678999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHH-HHHhHhhceEEEEeccC----CHHHHHHHHHhcCeEEEEcchHHHHHHHhcc---ccccccccceEEEEEeC
Q 008535 249 RCNGWCC-TWAMAAVGGINVCIRTV----SAKIIFDSILIHKVTHLCGQPRILNMIANAS---ASDQNQLQRKVIIVIAG 320 (562)
Q Consensus 249 ~~~gl~~-~~~~~~~g~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~---~~~~~~l~~l~~i~~~g 320 (562)
|.+|+.. ++.++..|+++++.+++ ++..+++.++++++|++.++|.++..+++.. .....+++++|.+++||
T Consensus 219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 9999886 77788889998888764 8999999999999999999999999988753 33445789999999999
Q ss_pred CCChHHHHHHHHh-c------CCeeeccccCccccCcccccccCCCCCCCcC-------------C--ccccccccccCc
Q 008535 321 VLPTIEVLEQVAN-F------GFNIRHAYGMTEVLGPAIVRQWKPEGESSAL-------------D--HEHEMTKHREGL 378 (562)
Q Consensus 321 ~~l~~~~~~~~~~-~------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~g~ 378 (562)
+++++++.+.|.+ + +.++++.||+||++++++............. . .........+|.
T Consensus 299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 378 (590)
T 3kxw_A 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378 (590)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence 9999999998873 3 2369999999999887765432211100000 0 001112234444
Q ss_pred cccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhcc-------c--eeeeCceeEEcCCCcEE
Q 008535 379 NNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRN-------G--WYHTGDLAVRNPDGYVQ 449 (562)
Q Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGD~~~~~~~g~l~ 449 (562)
| .++++|++.+++.+++.| +.|||+|+||+++.||+++++.|.+.|.+ | ||+|||+|++| +|.++
T Consensus 379 p---~~~v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 379 P---IQEVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp E---SSEEEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred C---CCCeEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 4 445889998778888776 77999999999999999999999999953 5 99999999999 99999
Q ss_pred EeccccceeecCCeEechHHHHHHH-hcCCCce--eEEEEeeeCCCCCceeEEEEEeCCCC--CCCHHHHHHHHhccCCC
Q 008535 450 MKDRRKDIIISGAEIISSLEVEAVL-LSNPKVL--EAAVVGKVDDQLKEVPVAFVKLKEGR--EASPEELVTFCGDELPS 524 (562)
Q Consensus 450 ~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~v~~v~~~~~~--~~~~~~l~~~~~~~l~~ 524 (562)
+.||.||+||++|++|+|.+||++| ..+|.|. +++|++++++. ++.++++++..++. ..+.+++.+++++.++.
T Consensus 453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~ 531 (590)
T 3kxw_A 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYE 531 (590)
T ss_dssp EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 7789998 89999988876 67788888887653 33567888999888875
Q ss_pred -CCCCc-EEEee---cccCCCCCcchHHHHhhhhhhhccc
Q 008535 525 -CMVPR-AIFFE---DIPVNSTGKVQKFVLRGKVNATAVG 559 (562)
Q Consensus 525 -~~~p~-~i~~~---~lP~t~~GKv~r~~l~~~~~~~~~~ 559 (562)
+++|. .+.++ +||+|++||++|++|++++.++..+
T Consensus 532 ~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 532 NHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred HcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence 77775 45544 5999999999999999999877643
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-72 Score=593.31 Aligned_cols=494 Identities=18% Similarity=0.177 Sum_probs=309.9
Q ss_pred cCCCCCChHHHHHHHHHHcCCceEEEECC----------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Q 008535 15 ANNVPLTPIDFLERAAHVYGDATSIIYGT----------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84 (562)
Q Consensus 15 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~ 84 (562)
.....+|+.++|+++++.+|+++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 33567899999999999999999998743 789999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcc
Q 008535 85 KLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTC 164 (562)
Q Consensus 85 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (562)
+++|||+++|++++|+++.++.+++.+++++++++++|++......+. ... ...++...
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~~------~~~~~~~~---------- 152 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LPP------ETKVLDTK---------- 152 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CCT------TCEEEETT----------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cCc------cceeeccc----------
Confidence 999999999999999999999999999999999999999865432110 000 01111100
Q ss_pred cccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh--------cCCC
Q 008535 165 SVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR--------CDVR 236 (562)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~--------~~~~ 236 (562)
...+.+........ .......++++++|+|||||||.||||++||+++.......... +.+.
T Consensus 153 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (562)
T 3ite_A 153 ---------NQSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELG 222 (562)
T ss_dssp ---------CHHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred ---------chhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccC
Confidence 01122222111111 11123456788999999999999999999999988776654432 4577
Q ss_pred CCCeeeeecccccchhhHHHHHhHhhceEEEEeccC-CHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEE
Q 008535 237 DMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTV-SAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVI 315 (562)
Q Consensus 237 ~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~-~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~ 315 (562)
..+++++..|++|..++...+.++..|+++++.+.. .+..+.+.++++++|+++++|++++.+.... .+++++|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~ 298 (562)
T 3ite_A 223 GVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVY 298 (562)
T ss_dssp TTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCE
T ss_pred cCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEE
Confidence 889999999999999888888889999998887654 3578889999999999999999988875433 46889999
Q ss_pred EEEeCCCChHHHHHHHHh-cCCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCc
Q 008535 316 IVIAGVLPTIEVLEQVAN-FGFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTM 394 (562)
Q Consensus 316 i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 394 (562)
+++||+++++++.+.+++ +++++++.||+||++..++....... .....+|.|.++. .+++++.+.+
T Consensus 299 ~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~~~ 366 (562)
T 3ite_A 299 LGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD-----------SDTRCIGHPLGDS-VAHVLAPGSN 366 (562)
T ss_dssp EEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT-----------SCTTEEEEECTTC-EEEEECTTSS
T ss_pred EEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC-----------CCCccccccCCCC-eEEEEeCCCC
Confidence 999999999999999985 58999999999999876665432211 1123567777776 7888887778
Q ss_pred ccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccc--eeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHH
Q 008535 395 KSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNG--WYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEA 472 (562)
Q Consensus 395 ~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 472 (562)
.+++.| +.|||+|+|+.++.||+++++.+...+.+| ||+|||+|++|+||++++.||.||+||++|++|+|.+||+
T Consensus 367 ~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 367 EHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp CBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred CCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence 878776 779999999999999999999888766666 9999999999999999999999999999999999999999
Q ss_pred HHhcC-CCceeEEEEeeeCCCCCceeEEEEEeCCCCCC-------------CHHHHHHHHhccCCCCCCCcEEEeec-cc
Q 008535 473 VLLSN-PKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA-------------SPEELVTFCGDELPSCMVPRAIFFED-IP 537 (562)
Q Consensus 473 ~l~~~-~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~-------------~~~~l~~~~~~~l~~~~~p~~i~~~~-lP 537 (562)
+|.++ +.+.+++|++.+++..++..++.++...+... ..++|+++++++|+.|++|+.+.+++ ||
T Consensus 445 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP 524 (562)
T 3ite_A 445 VIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP 524 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence 99998 88889998888888777766665554433222 23589999999999999999988655 99
Q ss_pred CC-CCCcchHHHHhhhhhhhcc
Q 008535 538 VN-STGKVQKFVLRGKVNATAV 558 (562)
Q Consensus 538 ~t-~~GKv~r~~l~~~~~~~~~ 558 (562)
+| ++||++|++|++++.+...
T Consensus 525 ~t~~~GKi~r~~L~~~~~~~~~ 546 (562)
T 3ite_A 525 LRDTSAKTDAKALEHMFHTLSL 546 (562)
T ss_dssp ----------------------
T ss_pred CCCCCCcchHHHHHHHHhccCH
Confidence 98 9999999999999987653
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.6e-70 Score=624.53 Aligned_cols=487 Identities=20% Similarity=0.246 Sum_probs=409.4
Q ss_pred CCCCChHHHHHHHHHHcCCceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 17 NVPLTPIDFLERAAHVYGDATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 17 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
.+..++.++|+++++.+|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 461 ~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~ 540 (1304)
T 2vsq_A 461 HETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540 (1304)
T ss_dssp CCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccCCCCCCCCc
Q 008535 97 LSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVANNFPSGSLD 176 (562)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (562)
++|++|.++.+++.++++++++++++++......+.. +.. ....+.+++..
T Consensus 541 ~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~------~~~~~~~~~~~------------------- 591 (1304)
T 2vsq_A 541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LPY------TGTTLFIDDQT------------------- 591 (1304)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CCC------CSEEEESSCGG-------------------
T ss_pred EEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cCC------CCcEEEecccc-------------------
Confidence 9999999999999999999999999998764322110 000 11111111100
Q ss_pred hhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHH
Q 008535 177 YNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCT 256 (562)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~ 256 (562)
.... ..........+++++||+|||||||.||||+++|+++.+. .+....+++.++++++...|++|..+...+
T Consensus 592 --~~~~---~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 665 (1304)
T 2vsq_A 592 --RFEE---QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDF 665 (1304)
T ss_dssp --GGGS---CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred --cccc---ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence 0000 0011112346789999999999999999999999998765 445566788999999999999999988889
Q ss_pred HHhHhhceEEEEecc---CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHh
Q 008535 257 WAMAAVGGINVCIRT---VSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVAN 333 (562)
Q Consensus 257 ~~~~~~g~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~ 333 (562)
+.++..|+++++.+. .++..+.+.+.++++|+++.+|++++.|.... ...++++|.+++|||+++.+..+.+.+
T Consensus 666 ~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~ 742 (1304)
T 2vsq_A 666 YASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALR 742 (1304)
T ss_dssp HHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHH
Confidence 999999999999864 68999999999999999999999999997653 234678999999999999999988874
Q ss_pred -c-CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcc
Q 008535 334 -F-GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRA 411 (562)
Q Consensus 334 -~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~ 411 (562)
+ +.++++.||+||++..++....... ........+|.|.++. .++|+|. .++++|.| +.|||+|+|
T Consensus 743 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~--------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G 810 (1304)
T 2vsq_A 743 IMGPGKLINCYGPTEGTVFATAHVVHDL--------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISG 810 (1304)
T ss_dssp HHCTTCEEEEECCGGGSSCSEEEECCCC--------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEE
T ss_pred hCCCCEEEEeEChhHHhHHheeeeccCc--------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEec
Confidence 4 4789999999999877665432210 0111234678887777 7888886 67788776 779999999
Q ss_pred hhhhhhhcCCchhhHhhhc-------cceeeeCceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHhcCCCceeEE
Q 008535 412 NTVMLGYFKNPKATEEAFR-------NGWYHTGDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAA 484 (562)
Q Consensus 412 ~~~~~gy~~~~~~~~~~~~-------~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 484 (562)
+++++||+++|+.|.++|. ++||||||+|++++||.++++||.||+||++|.+|+|.|||++|.++|+|.+++
T Consensus 811 ~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~ 890 (1304)
T 2vsq_A 811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAV 890 (1304)
T ss_dssp TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEE
T ss_pred cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEE
Confidence 9999999999999999983 359999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhh
Q 008535 485 VVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNA 555 (562)
Q Consensus 485 v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~ 555 (562)
|++.++...++.++++++... ..+.++++++++++||.|++|..+++.+ ||+|+|||++|++|++....
T Consensus 891 V~~~~~~~~~~~l~a~vv~~~--~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 891 VVADRHESGDASINAYLVNRT--QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp EEEECCSSSCCEEEEEEECSS--SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGG
T ss_pred EEEEecCCCCEEEEEEEeCCC--CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcchh
Confidence 999988888889999998754 4678899999999999999999988655 99999999999999876543
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.2e-70 Score=578.98 Aligned_cols=501 Identities=20% Similarity=0.196 Sum_probs=404.4
Q ss_pred CCChHHHHHHHHHHcCCceEEEEC---CeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535 19 PLTPIDFLERAAHVYGDATSIIYG---TVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA 95 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p~~~a~~~~---~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 95 (562)
..|+.++|+++++.+|+.+++... ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 449999999999999999888653 37899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCC-------HHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCCCCcccccC
Q 008535 96 VLSALNTRLD-------SATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQPSTCSVAN 168 (562)
Q Consensus 96 ~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
+++|+++.++ .+++.++++.+++++++++.+....+......... ..++.
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-------~~~~~---------------- 156 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPE-------LHVLS---------------- 156 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTT-------CEEEE----------------
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCc-------ceecc----------------
Confidence 9999999998 89999999999999999999887766654432211 00000
Q ss_pred CCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhh-cCCCCCCeeeeeccc
Q 008535 169 NFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISR-CDVRDMPVFLWTLDM 247 (562)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-~~~~~~~~~l~~~pl 247 (562)
. .................++++++|+|||||||.||||.++|+++..+....... +++.++|++++.+|+
T Consensus 157 --------~-~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 157 --------H-AWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp --------H-HHHHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred --------h-hhhhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 0 000001111111123457899999999999999999999999998888776654 789999999999999
Q ss_pred ccchhhHH-HHHhHhhceEEEEecc----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhccc---cccccccceEEEEEe
Q 008535 248 FRCNGWCC-TWAMAAVGGINVCIRT----VSAKIIFDSILIHKVTHLCGQPRILNMIANASA---SDQNQLQRKVIIVIA 319 (562)
Q Consensus 248 ~~~~gl~~-~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~l~~i~~~ 319 (562)
+|.+|+.. ++.++..|+++++.+. +++..+++.++++++|+++++|.+++.+.+... ....+++++|.+++|
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~g 307 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIG 307 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEEC
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhcc
Confidence 99999875 4555667777776653 589999999999999999999999998876543 234568899999999
Q ss_pred CCCChHHHHHHHHh-c------CCeeeccccCccccCcccccccCCCCCCCc------------C----Ccccccccccc
Q 008535 320 GVLPTIEVLEQVAN-F------GFNIRHAYGMTEVLGPAIVRQWKPEGESSA------------L----DHEHEMTKHRE 376 (562)
Q Consensus 320 g~~l~~~~~~~~~~-~------~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~------------~----~~~~~~~~~~~ 376 (562)
|++++++..+.|.+ + +.++++.||+||+++.++............ . ..........+
T Consensus 308 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (576)
T 3gqw_A 308 AEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNC 387 (576)
T ss_dssp SSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBC
T ss_pred CccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeec
Confidence 99999999999874 3 678999999999988776543221110000 0 00011122367
Q ss_pred CccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCCCcEEEeccccc
Q 008535 377 GLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPDGYVQMKDRRKD 456 (562)
Q Consensus 377 g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~~~GR~~d 456 (562)
|.|.++. .++|+|. ++++++.| +.|||+|+|+.++.||+++++.+...+.+|||+|||+|++ +||.+++.||.||
T Consensus 388 G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd 462 (576)
T 3gqw_A 388 GKALPEH-GIEIRNE-AGMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKD 462 (576)
T ss_dssp CEECTTC-EEEEECT-TSCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTT
T ss_pred CCcCCCC-eEEEECC-CCCCCCCC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcc
Confidence 8888887 8888884 78888776 7899999999999999999999988889999999999999 6999999999999
Q ss_pred eeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccC-CCCCCCcEEEee-
Q 008535 457 IIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDEL-PSCMVPRAIFFE- 534 (562)
Q Consensus 457 ~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i~~~- 534 (562)
+||++|.+|+|.+||++|.++|+|.+++|++..... +..+++++.........+++.+++++++ +.+++|..+.+.
T Consensus 463 ~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~ 540 (576)
T 3gqw_A 463 LIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLP 540 (576)
T ss_dssp CEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEEC
T ss_pred eEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEEC
Confidence 999999999999999999999999998888877764 3355555554443345568888888888 688999988765
Q ss_pred --cccCCCCCcchHHHHhhhhhhhcc
Q 008535 535 --DIPVNSTGKVQKFVLRGKVNATAV 558 (562)
Q Consensus 535 --~lP~t~~GKv~r~~l~~~~~~~~~ 558 (562)
+||+|++||++|++|++.|.+...
T Consensus 541 ~~~lP~t~~GKi~r~~l~~~~~~~~~ 566 (576)
T 3gqw_A 541 PHSIPRTSSGKPARAEAKKRYQKAYA 566 (576)
T ss_dssp SSCSCBCTTSSBCHHHHHHHHHHHHT
T ss_pred CCCcCcCCCccchHHHHHHHHHHHhh
Confidence 499999999999999999987653
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.3e-58 Score=476.02 Aligned_cols=405 Identities=18% Similarity=0.187 Sum_probs=313.9
Q ss_pred cccCCCCCChHHHHHHHHHHcCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH
Q 008535 13 ASANNVPLTPIDFLERAAHVYGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL 83 (562)
Q Consensus 13 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~ 83 (562)
...+.+.+|+.++|+++++.+|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus 17 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~ 95 (480)
T 3t5a_A 17 RGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY 95 (480)
T ss_dssp -------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH
Confidence 4455677899999999999999999999865 789999999999999999999996 999999999999999
Q ss_pred HHHHHHhhhccceEEecCC---CCCHHHHHHHHhhCCceEEEEeccchHHHHHHHhhcCCCCcCCCCCceeccCCCCCCC
Q 008535 84 YKLHFAVPMAGAVLSALNT---RLDSATLASILRQLEAKIIFVDYQFVEVVQNALDILSPNHKCDKAPLLVTIPECDHYQ 160 (562)
Q Consensus 84 ~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (562)
++++|||+++|++++|+++ .++.+++.++++.++++++|++......+.......... ....++.++...
T Consensus 96 ~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 96 VVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE----SPPSIIEVDLLD--- 168 (480)
T ss_dssp HHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC----------CCEEEEGGGSC---
T ss_pred HHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc----cccceeEecccc---
Confidence 9999999999999999999 778999999999999999999998777665433221110 011222221110
Q ss_pred CCcccccCCCCCCCCchhhhhhcccCccccCCCCCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCC---
Q 008535 161 PSTCSVANNFPSGSLDYNDLLEMGKADFEMMQPNHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRD--- 237 (562)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~--- 237 (562)
.. ...........++++++|+|||||||.||||++||+++..+.......+.+..
T Consensus 169 ---------------------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~ 226 (480)
T 3t5a_A 169 ---------------------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI 226 (480)
T ss_dssp ---------------------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTC
T ss_pred ---------------------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccC
Confidence 00 00011112345789999999999999999999999999998888888887777
Q ss_pred ---CCeeeeecccccchhhH-HHHHhHhhceEEEEeccC----CHHHHHHHHHhcCeEEEEcchHHHHHHHhc----ccc
Q 008535 238 ---MPVFLWTLDMFRCNGWC-CTWAMAAVGGINVCIRTV----SAKIIFDSILIHKVTHLCGQPRILNMIANA----SAS 305 (562)
Q Consensus 238 ---~~~~l~~~pl~~~~gl~-~~~~~~~~g~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~ 305 (562)
++++++.+|++|.+|+. .++.++..|+++++.++. ++..+++.++++++| +..+|.++..++.. ...
T Consensus 227 ~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~ 305 (480)
T 3t5a_A 227 PPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDM 305 (480)
T ss_dssp CCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGG
T ss_pred CCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccc
Confidence 89999999999999976 467788889999988653 899999999999999 88889888888764 334
Q ss_pred ccccccceEEEEEeCCCChHHHHHHHHh-cC------CeeeccccCccccCcccccccCCCCCCCc-------------C
Q 008535 306 DQNQLQRKVIIVIAGVLPTIEVLEQVAN-FG------FNIRHAYGMTEVLGPAIVRQWKPEGESSA-------------L 365 (562)
Q Consensus 306 ~~~~l~~l~~i~~~g~~l~~~~~~~~~~-~~------~~l~~~YG~tE~~~~~~~~~~~~~~~~~~-------------~ 365 (562)
...+++++|.+++||+++++++.++|.+ ++ ..+++.||+||+++.++............ .
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 385 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence 4567899999999999999999999984 42 36999999999988776654322111000 0
Q ss_pred CccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhh------------ccce
Q 008535 366 DHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAF------------RNGW 433 (562)
Q Consensus 366 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~g~ 433 (562)
..........+|.|.+ . .++|+|.+++++++.| +.|||+|+|++++.||+++|+.|.+.| .+||
T Consensus 386 ~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w 461 (480)
T 3t5a_A 386 AGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461 (480)
T ss_dssp CSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCB
T ss_pred CCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCe
Confidence 0011233457788888 5 8999998778888877 789999999999999999999999999 3569
Q ss_pred eeeCceeEEcCCCcEEEecc
Q 008535 434 YHTGDLAVRNPDGYVQMKDR 453 (562)
Q Consensus 434 ~~TGD~~~~~~~g~l~~~GR 453 (562)
|+|||+|++| ||+++|+||
T Consensus 462 ~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 462 LRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEEEEEE-TTEEEECC-
T ss_pred eeccceeeEE-CCEEEEeCC
Confidence 9999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=4.5e-54 Score=423.39 Aligned_cols=317 Identities=17% Similarity=0.134 Sum_probs=261.5
Q ss_pred CCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEeccCCHHH
Q 008535 197 CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRTVSAKI 276 (562)
Q Consensus 197 ~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~~~~~~ 276 (562)
+|+++|+|||||||.||||++||+++.+++......+++.++|++++++|++|.+|+..++.++..|+++++.++. ..
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~~ 114 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--AN 114 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--SC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--cc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998887542 12
Q ss_pred HHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHHHHHHHHhcCCeeeccccCccccCccccccc
Q 008535 277 IFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIEVLEQVANFGFNIRHAYGMTEVLGPAIVRQW 356 (562)
Q Consensus 277 ~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~ 356 (562)
.++.++++++|++.++|++++.|++.... ...++++|.+++||+++++++.++++++++++++.||+||+++.++....
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~ 193 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKAL 193 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEEC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccc
Confidence 35678899999999999999999887653 35689999999999999999999999999999999999999876665432
Q ss_pred CCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeee
Q 008535 357 KPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHT 436 (562)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~T 436 (562)
... .....|.+.+ ++.+... +.|||+++|+.. .+|||+|
T Consensus 194 ~~~------------~~g~~~~~~p---gv~~~~~-----------~~Gel~~~g~~~---------------~~g~~~T 232 (358)
T 4gs5_A 194 NGP------------EASELYVFLP---GIQYGVD-----------ERGCLHISGAVT---------------NGQTVQT 232 (358)
T ss_dssp SST------------TCCSCEEECT---TCEEEEC-----------TTSEEEEESGGG---------------TTCCEEE
T ss_pred ccc------------ccceeeccCC---CeEEEec-----------CcCceEEecccc---------------cCcceec
Confidence 211 1112233332 3333222 339999998643 3689999
Q ss_pred CceeEEcCCCcEEEeccccceeecCCeEechHHHHHHHh---cCCCceeEEEE-eeeCCCCCceeEEEEEeCCCCCCCHH
Q 008535 437 GDLAVRNPDGYVQMKDRRKDIIISGAEIISSLEVEAVLL---SNPKVLEAAVV-GKVDDQLKEVPVAFVKLKEGREASPE 512 (562)
Q Consensus 437 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~~~~~v~~v~~~~~~~~~~~ 512 (562)
||+|++|++| ++++||.||+||++|++|+|.+||++|. +||.|.+++|+ +.+++..++.++++|+.... ....+
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~ 310 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTE 310 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHH
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHH
Confidence 9999999888 6677999999999999999999998774 57999998876 67788888999988875443 34567
Q ss_pred HHHHHHhccCCCCCCCcEEEeec-ccCCCCCcchHHHHhhhhhhhccc
Q 008535 513 ELVTFCGDELPSCMVPRAIFFED-IPVNSTGKVQKFVLRGKVNATAVG 559 (562)
Q Consensus 513 ~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKv~r~~l~~~~~~~~~~ 559 (562)
+|+++++++|+.|++|+.+++++ ||+|++||++|++|++.+.+..+|
T Consensus 311 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~G 358 (358)
T 4gs5_A 311 RLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSNG 358 (358)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-----
T ss_pred HHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcCC
Confidence 89999999999999999888655 999999999999999999988765
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=9.8e-48 Score=390.74 Aligned_cols=326 Identities=18% Similarity=0.183 Sum_probs=262.8
Q ss_pred CCC-CCceEEEeccCCCCCCCceEeechhHHHHHHHH---HhhcCCCCCCeeeeecccccchhh-HHHHHhHhhceEEEE
Q 008535 194 NHE-CDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQ---ISRCDVRDMPVFLWTLDMFRCNGW-CCTWAMAAVGGINVC 268 (562)
Q Consensus 194 ~~~-~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~---~~~~~~~~~~~~l~~~pl~~~~gl-~~~~~~~~~g~~~v~ 268 (562)
..+ +++++++|||||||.||+|.+||+++....... ...+++.++|+++...|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 789999999999999999999999987766554 334588999999999998665554 456777888999998
Q ss_pred eccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccc--ccceEEEEEeCCCChHHHHHHHHh-cCCeeeccccCc
Q 008535 269 IRTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ--LQRKVIIVIAGVLPTIEVLEQVAN-FGFNIRHAYGMT 345 (562)
Q Consensus 269 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~i~~~g~~l~~~~~~~~~~-~~~~l~~~YG~t 345 (562)
.+..++..+++.++++++|+++++|+++..|++........ ++++|.+++||+++++++.+.+++ +++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 88889999999999999999999999999998876544443 789999999999999999999984 599999999999
Q ss_pred cccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhh
Q 008535 346 EVLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKAT 425 (562)
Q Consensus 346 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 425 (562)
|+++.++...... ....+.+.+.. .++|+|.+++.+++.| +.|||+|+|. +
T Consensus 242 E~~~~~~~~~~~~--------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~ 292 (436)
T 3qov_A 242 EMNGPGVAFECQE--------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------D 292 (436)
T ss_dssp GGTEEEEEEECTT--------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------S
T ss_pred hhcCCeeEEecCC--------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------C
Confidence 9965533322110 01122333344 7888887788888877 6799999983 2
Q ss_pred HhhhccceeeeCceeEEcCCC------c---EEEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCce
Q 008535 426 EEAFRNGWYHTGDLAVRNPDG------Y---VQMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEV 496 (562)
Q Consensus 426 ~~~~~~g~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~ 496 (562)
...|.++||+|||+|+++++| . +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 293 ~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 293 REMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp CCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred cCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 334568899999999999998 4 6999999999999999999999999999999999999999988888889
Q ss_pred eEEEEEeCCCCCCC----HHHHHHHHhccCCCC-CCCcEEEeec---ccCCCCCcchHHHHh
Q 008535 497 PVAFVKLKEGREAS----PEELVTFCGDELPSC-MVPRAIFFED---IPVNSTGKVQKFVLR 550 (562)
Q Consensus 497 ~v~~v~~~~~~~~~----~~~l~~~~~~~l~~~-~~p~~i~~~~---lP~t~~GKv~r~~l~ 550 (562)
++++|++. +...+ .+++++++++.++.+ .+|..+.+++ ||+|+ ||++|...+
T Consensus 373 l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~ 432 (436)
T 3qov_A 373 MIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKDL 432 (436)
T ss_dssp EEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEEC
T ss_pred EEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEec
Confidence 99999988 54444 578999999998888 8898887654 99999 999987543
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.8e-48 Score=394.59 Aligned_cols=332 Identities=16% Similarity=0.180 Sum_probs=268.4
Q ss_pred CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI 269 (562)
Q Consensus 194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~ 269 (562)
..++++++++|||||||.||+|.+||+++........ ..+++.++|+++..+|+ +|..++...+.++..|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 3567899999999999999999999999876654433 36788999999999998 5677777778888899999988
Q ss_pred ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhccccccc--cccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCcc
Q 008535 270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQN--QLQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTE 346 (562)
Q Consensus 270 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE 346 (562)
+..++..+++.++++++|+++++|+++..|++....... .++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 888999999999999999999999999999886543333 358999999999999999999998 56999999999999
Q ss_pred ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535 347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 426 (562)
+++.++....... . ...+.+.+.. .++|+|.+++++++.| +.|||+|+|. +.
T Consensus 249 ~~g~~~~~~~~~~-~------------~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~ 300 (443)
T 2y4o_A 249 VMGPGVACECVET-K------------DGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TK 300 (443)
T ss_dssp TTEEEEEEECTTT-C------------CSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred hcCCeEEeccCCC-C------------CceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Cc
Confidence 8543222211100 0 0111222333 7788887778888876 6799999983 22
Q ss_pred hhhccceeeeCceeEEcCC-CcE-----EEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEE
Q 008535 427 EAFRNGWYHTGDLAVRNPD-GYV-----QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF 500 (562)
Q Consensus 427 ~~~~~g~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~ 500 (562)
..|.++||+|||+|+++++ |.+ ++.||.||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++++
T Consensus 301 ~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 301 EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 3456789999999999999 987 8999999999999999999999999999999999999988877677889999
Q ss_pred EEeCC--C---CCCCHHHHHHHHhccCCCC-CCCcEEEee---cccCCCCCcchHHHHhhhh
Q 008535 501 VKLKE--G---REASPEELVTFCGDELPSC-MVPRAIFFE---DIPVNSTGKVQKFVLRGKV 553 (562)
Q Consensus 501 v~~~~--~---~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKv~r~~l~~~~ 553 (562)
|++.+ + ...+.++++++++++++.+ .+|..+.++ +||+|++||++|...++.+
T Consensus 381 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r~~ 442 (443)
T 2y4o_A 381 VELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRRQA 442 (443)
T ss_dssp EEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECCC-
T ss_pred EEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEeccCC
Confidence 99875 2 1234578999999999876 588887765 5999999999998665543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=9.7e-48 Score=390.90 Aligned_cols=328 Identities=16% Similarity=0.138 Sum_probs=267.3
Q ss_pred CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI 269 (562)
Q Consensus 194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~ 269 (562)
..++++++++|||||||.||+|.+||+++........ ..+++.++|++++.+|+ +|..++...+.++..|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 3567899999999999999999999999876654333 35788999999999998 6777777788888999999988
Q ss_pred ccCCHHHHHHHHHhcCeEEEEcchHHHHHHHhcccccccc--ccceEEEEEeCCCChHHHHHHHH-hcCCeeeccccCcc
Q 008535 270 RTVSAKIIFDSILIHKVTHLCGQPRILNMIANASASDQNQ--LQRKVIIVIAGVLPTIEVLEQVA-NFGFNIRHAYGMTE 346 (562)
Q Consensus 270 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~i~~~g~~l~~~~~~~~~-~~~~~l~~~YG~tE 346 (562)
+..++..+++.++++++|+++++|+++..|++.......+ ++++|.+++||+++++++.+.++ .+|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 8889999999999999999999999999998865433332 57899999999999999999997 56999999999999
Q ss_pred ccCcccccccCCCCCCCcCCccccccccccCccccccccceecccCCcccccCCCCceeEEEEcchhhhhhhcCCchhhH
Q 008535 347 VLGPAIVRQWKPEGESSALDHEHEMTKHREGLNNLLIQGVDVKQQNTMKSVPHDGKTLGEVMFRANTVMLGYFKNPKATE 426 (562)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 426 (562)
+++.++....... . ...+.+.+.. .++|+|.+++++++.| +.|||+|+|. +.
T Consensus 247 ~~g~~~~~~~~~~-~------------~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~ 298 (437)
T 2y27_A 247 VMGPGVASECVET-K------------DGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------TK 298 (437)
T ss_dssp TTEEEEEECCTTT-C------------SSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred hcCCeeEEecCCC-C------------CceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------Cc
Confidence 8543222111100 0 0112222333 7788887778888866 6799999982 23
Q ss_pred hhhccceeeeCceeEEcC-CCcE-----EEeccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEE
Q 008535 427 EAFRNGWYHTGDLAVRNP-DGYV-----QMKDRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAF 500 (562)
Q Consensus 427 ~~~~~g~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~ 500 (562)
..|.++||+|||+|++++ +|++ ++.||.||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++++
T Consensus 299 ~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~ 378 (437)
T 2y27_A 299 EALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLN 378 (437)
T ss_dssp SSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEE
T ss_pred CCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEE
Confidence 345678999999999998 6985 8999999999999999999999999999999999999988877778889999
Q ss_pred EEeCCCCC---CCHHHHHHHHhccCCCC-CCCcEEEee---cccCCCCCcchHHHHh
Q 008535 501 VKLKEGRE---ASPEELVTFCGDELPSC-MVPRAIFFE---DIPVNSTGKVQKFVLR 550 (562)
Q Consensus 501 v~~~~~~~---~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKv~r~~l~ 550 (562)
|++.++.. .+.++++++++++++.+ .+|..+.++ +||+|+ ||++|...+
T Consensus 379 v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~ 434 (437)
T 2y27_A 379 VEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDK 434 (437)
T ss_dssp ECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred EEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEec
Confidence 99876543 23478999999999887 588887765 599999 999997543
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.5e-29 Score=246.89 Aligned_cols=236 Identities=17% Similarity=0.128 Sum_probs=177.3
Q ss_pred CCCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---hhcCCCCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe
Q 008535 194 NHECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---SRCDVRDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI 269 (562)
Q Consensus 194 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~~~~~~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~ 269 (562)
..++++++|+|||||||.||+|.++|+++.....+.. ..+++.++|++++.+|+ +|..++...+.+...|+ .++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 3567899999999999999999999999888777443 45677899999999999 99999988888888888 6666
Q ss_pred ccCCHH-----------------------HHHHHHHhcCeEEEEcchHHHHHHHhccccccccccceEEEEEeCCCChHH
Q 008535 270 RTVSAK-----------------------IIFDSILIHKVTHLCGQPRILNMIANASASDQNQLQRKVIIVIAGVLPTIE 326 (562)
Q Consensus 270 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~i~~~g~~l~~~ 326 (562)
..++|. .+++.++++++|+++++|+++..|++........++++|.+++||++++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 667777 888899999999999999999999988655556788999999999999999
Q ss_pred HHHHHH-hc--CCeeeccccCccccCcccccccCCCCCCCcCCccccccccccCcc------ccccccceecccCCcccc
Q 008535 327 VLEQVA-NF--GFNIRHAYGMTEVLGPAIVRQWKPEGESSALDHEHEMTKHREGLN------NLLIQGVDVKQQNTMKSV 397 (562)
Q Consensus 327 ~~~~~~-~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~i~~~~~~~~~ 397 (562)
..+.++ +. ++++++.||+||+++++..+.. ..+|.+ .+.. .++|+|.++++++
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc-----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 999998 54 8999999999999866533210 025555 5555 8888888788888
Q ss_pred cCCCCceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCC--C-------cEEEeccccceeecCCe
Q 008535 398 PHDGKTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD--G-------YVQMKDRRKDIIISGAE 463 (562)
Q Consensus 398 ~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 463 (562)
+.| +.|||+|++..... + --+|+|||++...+. | .+..++|.++..++.|.
T Consensus 309 p~G--~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPWA------------F-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTT--CEEEEEEEEEETTE------------E-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCC--CceEEEEEEcCccc------------c-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 877 78999999843211 1 124999999988653 2 35567777777777664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.56 E-value=2.4e-15 Score=119.69 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=74.3
Q ss_pred ccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCH---HHHHHHHhccCCCC-CC
Q 008535 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASP---EELVTFCGDELPSC-MV 527 (562)
Q Consensus 452 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~---~~l~~~~~~~l~~~-~~ 527 (562)
.|.||||+++|.+|+|.+||++|.++|+|.++++++.+++.+++.+.++|+..++..... +++.+.+++.+..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 489999999999999999999999999999999999999999999999999887755443 33444444444322 24
Q ss_pred CcEEEee---cccCCCCCcchHHH-Hhhhh
Q 008535 528 PRAIFFE---DIPVNSTGKVQKFV-LRGKV 553 (562)
Q Consensus 528 p~~i~~~---~lP~t~~GKv~r~~-l~~~~ 553 (562)
+..+.++ .|||| +||++|-. +|+.|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~Rv~D~R~~~ 109 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVRVKDLRKTF 109 (109)
T ss_dssp CCEEEEECTTCSCCC----CCCEEECSCCC
T ss_pred ccceEEEcCCeecCC-CCCcchhhhhccCC
Confidence 4455554 39998 79998842 45443
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.53 E-value=1e-14 Score=115.69 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred ccccceeecCCeEechHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCC----CHHHHHHHHhccCC-CCC
Q 008535 452 DRRKDIIISGAEIISSLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREA----SPEELVTFCGDELP-SCM 526 (562)
Q Consensus 452 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~----~~~~l~~~~~~~l~-~~~ 526 (562)
||.||+|+++|.+++|.+||++|.++|+|.++++++.+++.+++.+++++++ ++... +.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999888888877778899999998 55322 23455555554442 233
Q ss_pred CCcEEEee---cccCCCCCcchHH
Q 008535 527 VPRAIFFE---DIPVNSTGKVQKF 547 (562)
Q Consensus 527 ~p~~i~~~---~lP~t~~GKv~r~ 547 (562)
++..+.++ .||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 34466655 39999 9999885
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.87 E-value=3e-08 Score=100.77 Aligned_cols=85 Identities=7% Similarity=0.130 Sum_probs=58.4
Q ss_pred CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC----CCcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535 402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP----DGYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477 (562)
Q Consensus 402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 477 (562)
|+.+||+|+... |.|+ ||+||+.++.. .+++.|+||.++++.+.|++++..+||+++.+.
T Consensus 384 G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred CceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 466999998753 4444 99999999975 467999999999999999999999999999854
Q ss_pred C--------CceeEEEEeeeCCCCCceeEEEEEe
Q 008535 478 P--------KVLEAAVVGKVDDQLKEVPVAFVKL 503 (562)
Q Consensus 478 ~--------~v~~~~v~~~~~~~~~~~~v~~v~~ 503 (562)
- .|.|..+..... .....-+.++++
T Consensus 448 ~~~l~~~g~~l~eft~~~~~~-~~p~Hy~~~wel 480 (581)
T 4eql_A 448 KLVLESSGLDLKDFTSYADTS-TFPGHYVVYLEV 480 (581)
T ss_dssp --------------CEEEECS-SSSBEEEEECC-
T ss_pred HHhhhhcCCEEEEEEEecCCC-CCCCeEEEEEEE
Confidence 2 255666553322 222234445544
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.85 E-value=2.9e-08 Score=100.99 Aligned_cols=86 Identities=13% Similarity=0.199 Sum_probs=62.9
Q ss_pred CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcC----CCcEEEeccccceeecCCeEechHHHHHHHhc-
Q 008535 402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNP----DGYVQMKDRRKDIIISGAEIISSLEVEAVLLS- 476 (562)
Q Consensus 402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~- 476 (562)
|+.+||+|+.. .|+|+ ||+||+.+++. .+++.|+||.++++.+.|+++++.+||+++.+
T Consensus 396 G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a 459 (609)
T 4b2g_A 396 GKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNA 459 (609)
T ss_dssp TCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHH
Confidence 36699999865 35665 99999999973 47899999999999999999999999999873
Q ss_pred -----CC--CceeEEEEeeeCCCCCceeEEEEEeC
Q 008535 477 -----NP--KVLEAAVVGKVDDQLKEVPVAFVKLK 504 (562)
Q Consensus 477 -----~~--~v~~~~v~~~~~~~~~~~~v~~v~~~ 504 (562)
.. .|.+..+..... .....-+.++++.
T Consensus 460 ~~~l~~~g~~l~eft~~~d~~-~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 460 SKLLREVNTSVVEYTSFADTK-TIPGHYVIYWELL 493 (609)
T ss_dssp HHGGGGTTEEEEEEEEEEECS-SSSCEEEEEEEEE
T ss_pred HHhhhccCCeEEEEEEecCCC-CCCCcEEEEEEEe
Confidence 22 356776653322 2222445555553
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.72 E-value=3.2e-07 Score=92.92 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=63.4
Q ss_pred CceeEEEEcchhhhhhhcCCchhhHhhhccceeeeCceeEEcCC----CcEEEeccccceeecCCeEechHHHHHHHhcC
Q 008535 402 KTLGEVMFRANTVMLGYFKNPKATEEAFRNGWYHTGDLAVRNPD----GYVQMKDRRKDIIISGAEIISSLEVEAVLLSN 477 (562)
Q Consensus 402 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 477 (562)
|+.+||+|+... |.|+ ||+||+.++..- .++.|+||.++++.+.|+++++.+||+++.+.
T Consensus 391 G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a 454 (581)
T 4epl_A 391 GEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESA 454 (581)
T ss_dssp TCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHH
T ss_pred CCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHH
Confidence 366999998753 4444 999999999642 57999999999999999999999999988752
Q ss_pred --------CCceeEEEEeeeCCCCCceeEEEEEeC
Q 008535 478 --------PKVLEAAVVGKVDDQLKEVPVAFVKLK 504 (562)
Q Consensus 478 --------~~v~~~~v~~~~~~~~~~~~v~~v~~~ 504 (562)
-.|.|..+..... .....-+.++++.
T Consensus 455 ~~~l~~~~~~l~eft~~~d~~-~~p~hyv~~wE~~ 488 (581)
T 4epl_A 455 AKRLSEEKIEVIDFSSYIDVS-TDPGHYAIFWEIS 488 (581)
T ss_dssp HHHHHTTTCCEEEEEEEEECS-SSSCEEEEEEEES
T ss_pred HHhhcccCCeEEEEEEecCCC-CCCCcEEEEEeec
Confidence 2467777765322 2223445556664
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.08 E-value=0.88 Score=44.99 Aligned_cols=91 Identities=8% Similarity=0.062 Sum_probs=75.7
Q ss_pred eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
.+|.+.+...+..++..+...|+.++|++....+.+ ...+..+++++..|+..++.++ ...+.+...+++.++.+++
T Consensus 105 ~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 183 (436)
T 3qov_A 105 VHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALH 183 (436)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEE
T ss_pred EECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEE
Confidence 489999999898888888889999999999998753 4556677888999999888764 4778899999999999999
Q ss_pred EeccchHHHHHHHh
Q 008535 123 VDYQFVEVVQNALD 136 (562)
Q Consensus 123 ~~~~~~~~~~~~~~ 136 (562)
........+.....
T Consensus 184 ~~P~~~~~l~~~~~ 197 (436)
T 3qov_A 184 AIPSYAIRLAEVFQ 197 (436)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHH
Confidence 98887777665543
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.95 E-value=1 Score=44.61 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=74.2
Q ss_pred eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
.+|.+.+...+..++..+...|++++|++....+.+ ...+...++++..|+.++++++ .+.+.+...+++.++.+++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence 489999998888888888889999999999998863 4445567888999999887765 4788999999999999999
Q ss_pred EeccchHHHHHHH
Q 008535 123 VDYQFVEVVQNAL 135 (562)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (562)
........+....
T Consensus 188 ~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 188 VTPSYMLSIADEI 200 (437)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHH
Confidence 9888777665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.75 E-value=1.1 Score=44.51 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=74.2
Q ss_pred eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
.+|.+.+...+..++..+...|+.++|++...++.+ ...+...++++..|+.++++++. +.+.+...+++.++.+++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 489999998888888888889999999999998863 44456678889999998887654 788999999999999999
Q ss_pred EeccchHHHHHHH
Q 008535 123 VDYQFVEVVQNAL 135 (562)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (562)
........+....
T Consensus 190 ~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 190 VTPSYMLNLIDEM 202 (443)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHH
Confidence 9888776665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=80.48 E-value=14 Score=36.88 Aligned_cols=97 Identities=10% Similarity=0.099 Sum_probs=72.5
Q ss_pred cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCC
Q 008535 33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNT 102 (562)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 102 (562)
.|+.+|++.. + ..+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 4566766541 1 35899988877665543 3588999999999887532 3444678888999988775
Q ss_pred CCCHHHHHHHHhhCCceEEEEeccchHHHHH
Q 008535 103 RLDSATLASILRQLEAKIIFVDYQFVEVVQN 133 (562)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 133 (562)
..+++.+...+++.++.+++........+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 4789999999999999999998877666544
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=78.15 E-value=4.9 Score=38.43 Aligned_cols=85 Identities=7% Similarity=-0.073 Sum_probs=63.2
Q ss_pred eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--HHHHHHHHHhhhccceEEecCCCCCHH---------------
Q 008535 45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI--PALYKLHFAVPMAGAVLSALNTRLDSA--------------- 107 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~--------------- 107 (562)
.+|.+.+...+..++..+...|+.++|++...+|-+ .-.+...++++..|+.+++. ..++.
T Consensus 110 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~~ 187 (369)
T 3hgu_A 110 VAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATVR 187 (369)
T ss_dssp EECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHHH
T ss_pred EECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhhH
Confidence 479999988888777777888999999999999873 23344455558889855543 33444
Q ss_pred --------HHHHHHhhCCceEEEEeccchHHH
Q 008535 108 --------TLASILRQLEAKIIFVDYQFVEVV 131 (562)
Q Consensus 108 --------~l~~~l~~~~~~~ii~~~~~~~~~ 131 (562)
.+.+.+++.++.+++........+
T Consensus 188 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 188 KYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 667799999999999887665544
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=77.66 E-value=30 Score=34.91 Aligned_cols=99 Identities=8% Similarity=-0.035 Sum_probs=72.9
Q ss_pred cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HH-HHHHhhhccceEEec
Q 008535 33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YK-LHFAVPMAGAVLSAL 100 (562)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 100 (562)
.|+.+|++.. + ..+|.+.+...+..... ..++.++|++...+|-...+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4566665541 1 35899988777655443 35789999999988876433 33 478889999998876
Q ss_pred CCCCCHHHHHHHHhhCCceEEEEeccchHHHHHHH
Q 008535 101 NTRLDSATLASILRQLEAKIIFVDYQFVEVVQNAL 135 (562)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 135 (562)
+ ..+++.+...+++.++.+++........+....
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 5 468899999999999999999887776665543
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.37 E-value=11 Score=38.44 Aligned_cols=96 Identities=11% Similarity=0.198 Sum_probs=70.8
Q ss_pred CceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecCCC
Q 008535 35 DATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALNTR 103 (562)
Q Consensus 35 ~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 103 (562)
+.++++... ..+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 667766521 3589998887766655443336889999999888875433 33466777 999888775 5
Q ss_pred CCHHHHHHHHhhCCceEEEEeccchHHHH
Q 008535 104 LDSATLASILRQLEAKIIFVDYQFVEVVQ 132 (562)
Q Consensus 104 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 132 (562)
.+++.+...+++.++.+++........+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 78999999999999999999887666554
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=74.41 E-value=21 Score=36.10 Aligned_cols=86 Identities=9% Similarity=0.001 Sum_probs=66.1
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHH---HHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYK---LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+...+...+.. .++.++|++...+|....+-. .+++++..|+..+..+ ...+..+...+++.++.+
T Consensus 209 v~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 284 (544)
T 3o83_A 209 IPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNM 284 (544)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCE
T ss_pred EEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCE
Confidence 358999988777665543 588999999999886544332 4788888998888765 467888899999999999
Q ss_pred EEEeccchHHHHH
Q 008535 121 IFVDYQFVEVVQN 133 (562)
Q Consensus 121 ii~~~~~~~~~~~ 133 (562)
++........+..
T Consensus 285 ~~~~P~~~~~l~~ 297 (544)
T 3o83_A 285 ASLVPSAVIMWLE 297 (544)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEechHHHHHHHh
Confidence 9998876665544
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=70.73 E-value=25 Score=35.32 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=64.4
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
..+|.+.+...+..++.. .++.++|++...+|-.-.. ...+++++ .|+..+..+ ..+.+.+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeEE
Confidence 358999887777665544 4899999999998876433 23345555 888888774 5789999999999999999
Q ss_pred EEeccchHHHHH
Q 008535 122 FVDYQFVEVVQN 133 (562)
Q Consensus 122 i~~~~~~~~~~~ 133 (562)
.+.......+..
T Consensus 263 ~~~P~~~~~l~~ 274 (517)
T 3r44_A 263 GAVPAILNFMRQ 274 (517)
T ss_dssp EECHHHHHHHHH
T ss_pred EeHHHHHHHHHh
Confidence 998877666554
No 51
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=70.42 E-value=66 Score=33.01 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=66.4
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHH-HHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA--LYK-LHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~--~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+...+...... .++.++|++....|.... ... .+++++..|+..+..+. .+...+...+++.++.+
T Consensus 202 V~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcE
Confidence 458998887776655443 478999999999885543 332 47888889988887654 67888889999999999
Q ss_pred EEEeccchHHHHHHH
Q 008535 121 IFVDYQFVEVVQNAL 135 (562)
Q Consensus 121 ii~~~~~~~~~~~~~ 135 (562)
+..-......+....
T Consensus 278 ~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 278 TALVPPAVSLWLQAL 292 (617)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEcchHHHHHHHHhh
Confidence 999887776665543
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=67.37 E-value=21 Score=36.27 Aligned_cols=89 Identities=8% Similarity=0.061 Sum_probs=67.2
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
..+|.+.+...+......+...++.++|++...+|-... .+...++++..|+..+..+ ..+++.+...+++.++..++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 358998887766555444444678899999998887642 2445677888999988775 57889999999999999999
Q ss_pred EeccchHHHHH
Q 008535 123 VDYQFVEVVQN 133 (562)
Q Consensus 123 ~~~~~~~~~~~ 133 (562)
........+..
T Consensus 287 ~~P~~~~~l~~ 297 (550)
T 3rix_A 287 LVPTLFSFFAK 297 (550)
T ss_dssp ECHHHHHHHHH
T ss_pred eCcHHHHHHHh
Confidence 98876665543
No 53
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=62.80 E-value=51 Score=32.84 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
..+|.+.+...+..+.. ..++.++|++...+|-.-.+ ...+++++..|..+++ . ..+++.+...+++.++.++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcEE
Confidence 35899988777665554 35889999999998875432 3333344445544444 3 6789999999999999999
Q ss_pred EEeccchHHHHH
Q 008535 122 FVDYQFVEVVQN 133 (562)
Q Consensus 122 i~~~~~~~~~~~ 133 (562)
+........+..
T Consensus 253 ~~~p~~~~~l~~ 264 (509)
T 3ivr_A 253 AEFAPMLGNILD 264 (509)
T ss_dssp EEETTHHHHHHH
T ss_pred EecHHHHHHHHh
Confidence 988877666544
No 54
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=62.69 E-value=39 Score=31.93 Aligned_cols=82 Identities=7% Similarity=-0.076 Sum_probs=57.1
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP-ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
..+|.+.+...+..++. ..+++++|++...+|-.. -.+..++..+..|+..+..++... ....+++.++..+.
T Consensus 55 V~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEE
Confidence 45899998877665544 358899999999888653 234455666777877777765443 24567888999888
Q ss_pred EeccchHHH
Q 008535 123 VDYQFVEVV 131 (562)
Q Consensus 123 ~~~~~~~~~ 131 (562)
........+
T Consensus 129 ~~P~~l~~l 137 (358)
T 4gs5_A 129 MVPMQLQSI 137 (358)
T ss_dssp ECHHHHHHH
T ss_pred cChHHHHHh
Confidence 877655544
No 55
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=62.34 E-value=39 Score=31.63 Aligned_cols=91 Identities=10% Similarity=0.004 Sum_probs=59.2
Q ss_pred CCceEEEECCe--eccHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHH
Q 008535 34 GDATSIIYGTV--RFSWRQTHQICLKLASALAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLA 110 (562)
Q Consensus 34 p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (562)
+.++.+-.++. +=|+++-- +......+.+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+....
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~--a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL--GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH--HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 34555555442 23555432 222223344555 48888875666678888888889999998766555554445566
Q ss_pred HHHhhCCceEEEEecc
Q 008535 111 SILRQLEAKIIFVDYQ 126 (562)
Q Consensus 111 ~~l~~~~~~~ii~~~~ 126 (562)
..++.+++.+++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7789999999999764
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.19 E-value=51 Score=33.29 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=69.0
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL-YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
..+|.+.+...+..++.. .++.++|++...+|-.-.+ +..++.++..|+..+..+ ..+.+.+...+++.++.+++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 358999998877766554 4789999999888875432 334677888898888775 67889999999999999999
Q ss_pred EeccchHHHHHHHh
Q 008535 123 VDYQFVEVVQNALD 136 (562)
Q Consensus 123 ~~~~~~~~~~~~~~ 136 (562)
+.......+.....
T Consensus 274 ~~P~~~~~l~~~~~ 287 (549)
T 3g7s_A 274 AVPPALNVLVNTLE 287 (549)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred eCCHHHHHHHhhhh
Confidence 99887777665543
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=61.79 E-value=43 Score=33.37 Aligned_cols=98 Identities=11% Similarity=0.200 Sum_probs=71.4
Q ss_pred cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCcHHH--HHHHHHhhhccceEEe
Q 008535 33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKI--SRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSA 99 (562)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv--~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~ 99 (562)
.|+.+|++.. + ..+|.+.+...+..+.. ..++ .++|++...+|-...+ ...+++++..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 4666766542 1 34788887766555433 3577 7889998888876443 3457888899999888
Q ss_pred cCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHH
Q 008535 100 LNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134 (562)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 134 (562)
.+. ..++.+...+++.++.+++........+...
T Consensus 228 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 261 (504)
T 1t5h_X 228 VEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAA 261 (504)
T ss_dssp CSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhh
Confidence 764 7888999999999999999988877766554
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=61.08 E-value=22 Score=35.67 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=64.0
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCCC--CCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNTR--LDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+...+..... ..++.++|++...+|-... .+..+++++..|+..+.+++. .+++.+...+++.++.+
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 35899888776654443 4688999999999987643 245578889999998888653 56788999999999999
Q ss_pred EEEeccchHH
Q 008535 121 IFVDYQFVEV 130 (562)
Q Consensus 121 ii~~~~~~~~ 130 (562)
++........
T Consensus 239 ~~~~P~~~~~ 248 (512)
T 3fce_A 239 WTSTPSFAEM 248 (512)
T ss_dssp EEECHHHHHH
T ss_pred EEecHHHHHH
Confidence 9988765543
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=58.87 E-value=25 Score=35.99 Aligned_cols=98 Identities=8% Similarity=0.003 Sum_probs=70.9
Q ss_pred cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecC
Q 008535 33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALN 101 (562)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 101 (562)
.|+.+|++.. + ..+|.+.+...+..+.. ..++.++|++...+|-...+ +..+++++..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 4566666542 1 35899998877766544 45889999999999887544 334788899999988876
Q ss_pred CCC---CHHHHHHHHhhCCceEEEEeccchHHHHH
Q 008535 102 TRL---DSATLASILRQLEAKIIFVDYQFVEVVQN 133 (562)
Q Consensus 102 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 133 (562)
+.. .+..+...+++.++.++.+.......+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 532 56778889999999998877665555443
No 60
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=58.34 E-value=54 Score=32.93 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=69.1
Q ss_pred CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc
Q 008535 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT 271 (562)
Q Consensus 195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~ 271 (562)
.++.+|++.... +-.+|.+.+...+..... ..+++++|++...++-.. ..+...++++..|+..+.++.
T Consensus 35 ~p~~~a~~~~~~-------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGAN-------GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTT-------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCC-------CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEeccCC
Confidence 455666654222 246899988766655544 457899999998888643 334566777888888888764
Q ss_pred -CCHHHHHHHHHhcCeEEEEcchHHHHHH
Q 008535 272 -VSAKIIFDSILIHKVTHLCGQPRILNMI 299 (562)
Q Consensus 272 -~~~~~~~~~i~~~~~t~l~~~p~~~~~l 299 (562)
..++.+...++..++.+++..+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 6778888899999999999887655544
No 61
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=57.98 E-value=29 Score=34.74 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCCC--CCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNTR--LDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+...+..++. ..++.++|++....|-... .+..+++++..|+..+.++.. ..++.+...+++.++.+
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 35899888776655443 3678999999999887643 345578889999998887653 56788899999999999
Q ss_pred EEEeccchHHH
Q 008535 121 IFVDYQFVEVV 131 (562)
Q Consensus 121 ii~~~~~~~~~ 131 (562)
++........+
T Consensus 238 ~~~~P~~~~~l 248 (511)
T 3e7w_A 238 WTSTPSFVQMC 248 (511)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 99887765544
No 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=57.35 E-value=44 Score=34.01 Aligned_cols=86 Identities=12% Similarity=0.027 Sum_probs=61.7
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecCC-CCCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALNT-RLDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+ +....... .....++.++|++...+|....+ ...+++++..|+..+..+. ..+++.+...+++.++.+
T Consensus 224 V~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~ 300 (570)
T 3c5e_A 224 AEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS 300 (570)
T ss_dssp EEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred EEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence 357888 44321111 12447889999999888876543 3356788888988877754 678999999999999999
Q ss_pred EEEeccchHHHH
Q 008535 121 IFVDYQFVEVVQ 132 (562)
Q Consensus 121 ii~~~~~~~~~~ 132 (562)
++........+.
T Consensus 301 ~~~~P~~~~~l~ 312 (570)
T 3c5e_A 301 MMGAPIVYRMLL 312 (570)
T ss_dssp EEECHHHHHHHH
T ss_pred EeccHHHHHHHH
Confidence 999877665543
No 63
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=54.21 E-value=62 Score=32.54 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=66.1
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL-YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIF 122 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 122 (562)
..+|.+.+...+.... .....++.++|++...+|-.-.. +...++++..|+..+..++..+++.+...+++.++.+++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 3588888765433211 11235788999999988875332 234677888999998887777899999999999999999
Q ss_pred EeccchHHHHHHH
Q 008535 123 VDYQFVEVVQNAL 135 (562)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (562)
........+....
T Consensus 273 ~~P~~~~~l~~~~ 285 (541)
T 1v25_A 273 GVPTVWLALADYL 285 (541)
T ss_dssp ECHHHHHHHHHHH
T ss_pred cchHHHHHHHhhh
Confidence 9888776665543
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=53.52 E-value=59 Score=33.69 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=63.1
Q ss_pred eccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH--HHHHHhhhccceEEecCCC---CCHHHHHHHHhhCCce
Q 008535 45 RFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY--KLHFAVPMAGAVLSALNTR---LDSATLASILRQLEAK 119 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~~ 119 (562)
.+|.+.+...+..... ...+++++|++....+-+...- ..+++.+..|+..+..+.. .+++.+.+.+++.++.
T Consensus 275 ~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt 352 (652)
T 1pg4_A 275 LHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN 352 (652)
T ss_dssp EEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred EECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence 4777776544322111 2367899999988888765443 4567889999998887642 4678899999999999
Q ss_pred EEEEeccchHHHHH
Q 008535 120 IIFVDYQFVEVVQN 133 (562)
Q Consensus 120 ~ii~~~~~~~~~~~ 133 (562)
++++.......+..
T Consensus 353 ~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 353 ILYTAPTAIRALMA 366 (652)
T ss_dssp EEEECHHHHHHHHT
T ss_pred EEEeCHHHHHHHHh
Confidence 99998877766554
No 65
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=52.62 E-value=60 Score=32.33 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=63.4
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH--HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP--ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
..+|.+.+...+..+...+ ++.++|++...+|... .++..+++.+..|+.++..+ ..+.+.+...+ +.++..+
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEE
Confidence 3589999888877666544 7889999988887643 33445788899999988774 56777777777 6789999
Q ss_pred EEeccchHHHHH
Q 008535 122 FVDYQFVEVVQN 133 (562)
Q Consensus 122 i~~~~~~~~~~~ 133 (562)
+........+..
T Consensus 248 ~~~P~~~~~l~~ 259 (505)
T 3nyq_A 248 FGVPTMYHRIAE 259 (505)
T ss_dssp EECHHHHHHHHH
T ss_pred EehHHHHHHHHH
Confidence 888776665544
No 66
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.80 E-value=49 Score=31.06 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=60.6
Q ss_pred CceEEEECC--eeccHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHH
Q 008535 35 DATSIIYGT--VRFSWRQTHQICLKLASALAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLAS 111 (562)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (562)
-++.+-.++ .+=||++= -....+.. +.+.| +++|.+..+....+-.-+.+.++|.++|..+..+-|...+.....
T Consensus 50 ~~IylK~E~lnptGSfK~R-gA~~~i~~-a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 50 AYVAVKQEMMQPTASIADR-PAYAMITD-AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp SEEEEEEGGGSTTSBTTHH-HHHHHHHH-HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEecCCCCCCCcHHH-HHHHHHHH-HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 345555544 23355532 22223333 33444 678876667778888889999999999988766666666666778
Q ss_pred HHhhCCceEEEEecc
Q 008535 112 ILRQLEAKIIFVDYQ 126 (562)
Q Consensus 112 ~l~~~~~~~ii~~~~ 126 (562)
.++.+++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998754
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=46.90 E-value=1.1e+02 Score=30.89 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=62.5
Q ss_pred eEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEE
Q 008535 215 VVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLC 290 (562)
Q Consensus 215 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 290 (562)
-.+|.+.+...+..... ..+++++|++...++-.. ..+...++++..|+..+.++. ..++.+...++..++.+++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 46899888766655444 457899999998888643 334456777888888888764 6778888899999999999
Q ss_pred cchHHHHHH
Q 008535 291 GQPRILNMI 299 (562)
Q Consensus 291 ~~p~~~~~l 299 (562)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 887655443
No 68
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=45.14 E-value=88 Score=26.97 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCCeeeeeccc-ccchhhHHHHHhHhhceEEEEe--ccCCHHHHHHHHHhcCeEEEEc------------chHHHHHHH
Q 008535 236 RDMPVFLWTLDM-FRCNGWCCTWAMAAVGGINVCI--RTVSAKIIFDSILIHKVTHLCG------------QPRILNMIA 300 (562)
Q Consensus 236 ~~~~~~l~~~pl-~~~~gl~~~~~~~~~g~~~v~~--~~~~~~~~~~~i~~~~~t~l~~------------~p~~~~~l~ 300 (562)
..+..++.+.+- .|..|....-..+-..|.-++. ....++.+.+.+.+++++++.. .+.+++.|
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l- 169 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL- 169 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH-
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH-
Q ss_pred hccccccccccceEEEEEeCCCChHHHHHHH
Q 008535 301 NASASDQNQLQRKVIIVIAGVLPTIEVLEQV 331 (562)
Q Consensus 301 ~~~~~~~~~l~~l~~i~~~g~~l~~~~~~~~ 331 (562)
+...+..--.+++||.+++++..+.+
T Consensus 170 -----~~~~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 170 -----NEEKLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp -----HHTTCGGGSEEEEESSSCCHHHHHHH
T ss_pred -----HHcCCCCCCEEEEECCCCCHHHHHHh
No 69
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=44.89 E-value=57 Score=33.10 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=70.0
Q ss_pred cCCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHhhhccceEEecCC
Q 008535 33 YGDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIP-ALYKLHFAVPMAGAVLSALNT 102 (562)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~ 102 (562)
.|+.+|++... ..+|.+.+...... ....++.++|++...+|-+. -....+++++..|+..+..+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 45677766521 35788877543221 23357899999999988753 345567788889998887764
Q ss_pred -CCCHHHHHHHHhhCCceEEEEeccchHHHHH
Q 008535 103 -RLDSATLASILRQLEAKIIFVDYQFVEVVQN 133 (562)
Q Consensus 103 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 133 (562)
...+..+...+++.++.++.........+..
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 5678899999999999999998877766554
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=44.81 E-value=1.1e+02 Score=30.40 Aligned_cols=80 Identities=9% Similarity=-0.100 Sum_probs=60.3
Q ss_pred eEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc-CCHHHHHHHHHhcCeEEEE
Q 008535 215 VVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT-VSAKIIFDSILIHKVTHLC 290 (562)
Q Consensus 215 v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~-~~~~~~~~~i~~~~~t~l~ 290 (562)
-.+|.+.+...+..... ..+++++|++...++-.. ..+...++++..|+..+.++. ...+.+...++..++.+++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi 105 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVV 105 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEE
Confidence 35899988766665544 347899999998888643 334566777888888888764 6778888889999999998
Q ss_pred cchHH
Q 008535 291 GQPRI 295 (562)
Q Consensus 291 ~~p~~ 295 (562)
..+..
T Consensus 106 ~~~~~ 110 (503)
T 4fuq_A 106 CDPSK 110 (503)
T ss_dssp ECGGG
T ss_pred ECchh
Confidence 87654
No 71
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=44.66 E-value=1.2e+02 Score=29.75 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=72.2
Q ss_pred CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHhhc---CCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc
Q 008535 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQISRC---DVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT 271 (562)
Q Consensus 195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~---~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~ 271 (562)
.++.+|++.........-....+|.+.+...+......+ +. ++|++...++-.. -.+...++++..|+..+.+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEeeCC
Confidence 455677665542211111236799998877776665544 43 7899888887643 334456777888888887754
Q ss_pred ----CCHHHHHHHHHhcCeEEEEcchHHHHHHHhc
Q 008535 272 ----VSAKIIFDSILIHKVTHLCGQPRILNMIANA 302 (562)
Q Consensus 272 ----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~ 302 (562)
...+.+...++..++..++..+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 3467888899999999999988877766543
No 72
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=43.02 E-value=93 Score=28.99 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=52.2
Q ss_pred eccHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 45 RFSWRQTHQICLKLA---SALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a---~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
.+++.+...-..... +.|...++++||+|+|...-+.-.+++++|....|+.++.++.+ .+. ..++++.+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 466666543333222 33455789999999999987777777777777778777766533 333 456778888887
Q ss_pred EEec
Q 008535 122 FVDY 125 (562)
Q Consensus 122 i~~~ 125 (562)
+...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7543
No 73
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=41.69 E-value=1.3e+02 Score=30.48 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=67.6
Q ss_pred CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc
Q 008535 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT 271 (562)
Q Consensus 195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~ 271 (562)
.++.+|++.... .| ....+|.+.+...+..... ..+++++|++...++-.. --+...++++..|+..+.+..
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeCCc
Confidence 456777765432 11 2467899888766655444 458999999999988643 234456777888888887764
Q ss_pred -CCHHHHHHHHHhcCeEEEEcchH
Q 008535 272 -VSAKIIFDSILIHKVTHLCGQPR 294 (562)
Q Consensus 272 -~~~~~~~~~i~~~~~t~l~~~p~ 294 (562)
..++.+...++..++..++..+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 67788889999999999887543
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=40.65 E-value=1.3e+02 Score=33.06 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHHh---hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEecc
Q 008535 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQIS---RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIRT 271 (562)
Q Consensus 195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~~ 271 (562)
.++.+|++...+ +..+|.+.+...+..... ..+++++|++...++-.. -.+...++++..|+..+.+++
T Consensus 74 ~pd~~Al~~~~~-------~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGPT-------GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETTT-------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECCC-------CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 456677664222 246899888766655544 457899999999988653 334567778888998888864
Q ss_pred -CCHHHHHHHHHhcCeEEEEcchHHHH
Q 008535 272 -VSAKIIFDSILIHKVTHLCGQPRILN 297 (562)
Q Consensus 272 -~~~~~~~~~i~~~~~t~l~~~p~~~~ 297 (562)
..++.+...++..++.+++..+....
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 172 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVD 172 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHH
Confidence 67788889999999999998765543
No 75
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=39.24 E-value=1.2e+02 Score=27.92 Aligned_cols=88 Identities=13% Similarity=0.004 Sum_probs=53.7
Q ss_pred ceEEEECC--eeccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHH
Q 008535 36 ATSIIYGT--VRFSWRQTHQICLKLASALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASI 112 (562)
Q Consensus 36 ~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 112 (562)
++.+-.++ .+-++++--. ..+...+.+.|. ++|+.|+. ...+-.-..+.++|.+.|..++.+-|...+..-...
T Consensus 32 ~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~ 108 (313)
T 2q3b_A 32 DIVAKLEFFNPANSVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML 108 (313)
T ss_dssp EEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEehhcCCCCcHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 45554433 2345554332 222233444554 67776655 666677777778888999876665444444455667
Q ss_pred HhhCCceEEEEecc
Q 008535 113 LRQLEAKIIFVDYQ 126 (562)
Q Consensus 113 l~~~~~~~ii~~~~ 126 (562)
++.+++++++++..
T Consensus 109 ~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 109 LRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEeCCC
Confidence 88999999999863
No 76
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=38.83 E-value=65 Score=30.57 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCC-----CCCHHHHHHHHhhCC--ceEEEEe
Q 008535 62 LAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNT-----RLDSATLASILRQLE--AKIIFVD 124 (562)
Q Consensus 62 L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~ii~~ 124 (562)
|...++++||.|++..+....+. -++...|+.++.++. ..+.+.++..+..-+ +++++..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 44457899999988877665543 345677887766653 246788888774334 6777643
No 77
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=38.71 E-value=1.2e+02 Score=27.69 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=54.0
Q ss_pred CceEEEECC--eeccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHH
Q 008535 35 DATSIIYGT--VRFSWRQTHQICLKLASALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLAS 111 (562)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (562)
.++.+-.++ .+-++++--.. .+...+.+.|. ++|+.|+. ...+-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a~--~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIAL--AMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH--HHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHHH--HHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 345554433 23355543222 22233344454 66776654 66677777788888889987665544433444556
Q ss_pred HHhhCCceEEEEecc
Q 008535 112 ILRQLEAKIIFVDYQ 126 (562)
Q Consensus 112 ~l~~~~~~~ii~~~~ 126 (562)
.++.+++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 778999999999864
No 78
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=38.33 E-value=2e+02 Score=26.06 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHcC-CCCCC--EEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 62 LAQLK-ISRGD--IVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 62 L~~~g-v~~gd--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
+.+.| +++|+ .|+. ...+-.-..+.++|.+.|..++.+-|...+..-...++.+++.+++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 46666 4444 56667777778888899987665544434455566788899999999865
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=38.06 E-value=73 Score=32.20 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCceEEEECC---------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH--HHHHHHHhhhccceEEecCC
Q 008535 34 GDATSIIYGT---------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA--LYKLHFAVPMAGAVLSALNT 102 (562)
Q Consensus 34 p~~~a~~~~~---------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~ 102 (562)
|+.++++... ..+|.+.+...+..+... ..++.++|++...+|-... ++..+++.+..|+..+.+.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 5677766522 458999887665544321 2688999999998887643 44557788888988877654
Q ss_pred C---CCHHHHHHHHhhCCceEEEEeccchHHHH
Q 008535 103 R---LDSATLASILRQLEAKIIFVDYQFVEVVQ 132 (562)
Q Consensus 103 ~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 132 (562)
. ..+..+...+++.++.++++.......+.
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 285 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQ 285 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHH
Confidence 2 35667889999999999998876555443
No 80
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=36.84 E-value=1.5e+02 Score=27.11 Aligned_cols=90 Identities=9% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCceEEEECCe--eccHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHH
Q 008535 34 GDATSIIYGTV--RFSWRQTHQICLKLASALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLA 110 (562)
Q Consensus 34 p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (562)
+.++.+-.++. +-|+++--.. .+...+.+.|. ++|+.|+. ...+-.-..+.++|.+.|..++.+-|...+..-.
T Consensus 25 g~~i~~K~E~~~ptGSfK~R~a~--~~i~~a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~ 101 (316)
T 1y7l_A 25 NGNVVVKIEGRNPSYSVKCRIGA--NMVWQAEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERK 101 (316)
T ss_dssp TTCEEEEETTSSGGGBTHHHHHH--HHHHHHHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHH
T ss_pred CCEEEEEeccCCCCCChHHHHHH--HHHHHHHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHH
Confidence 34566655442 3345544332 22233344554 66665544 4467777778888889998766554443445556
Q ss_pred HHHhhCCceEEEEecc
Q 008535 111 SILRQLEAKIIFVDYQ 126 (562)
Q Consensus 111 ~~l~~~~~~~ii~~~~ 126 (562)
..++.+++.+++++..
T Consensus 102 ~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 102 RLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 7788999999998864
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=36.48 E-value=1.2e+02 Score=29.45 Aligned_cols=63 Identities=21% Similarity=0.129 Sum_probs=47.0
Q ss_pred HHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEec
Q 008535 63 AQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 63 ~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 125 (562)
.+.| +++|...++....+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47775555566668888888888999998866665555555667788999999999975
No 82
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=36.36 E-value=1.6e+02 Score=30.55 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCCCceEEEeccCCCCCCCceEeechhHHHHHHHHH---h-hcCCCCCCeeeeecccccchhhHHHHHhHhhceEEEEec
Q 008535 195 HECDPISVNYTSGSTGDPKGVVYSHRGAYLNSLAQI---S-RCDVRDMPVFLWTLDMFRCNGWCCTWAMAAVGGINVCIR 270 (562)
Q Consensus 195 ~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~---~-~~~~~~~~~~l~~~pl~~~~gl~~~~~~~~~g~~~v~~~ 270 (562)
.++.+|++... ..+| ....+|.+.|...+.... . ..+++++|++...+|... -.+...++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEeeC
Confidence 45566666542 2122 235789988766655444 3 567889999999998753 33445677788888888775
Q ss_pred -cCCHHHHHHHHHhcCeEEEEcchH
Q 008535 271 -TVSAKIIFDSILIHKVTHLCGQPR 294 (562)
Q Consensus 271 -~~~~~~~~~~i~~~~~t~l~~~p~ 294 (562)
.+.++.+...++..++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 578889999999999999987654
No 83
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=35.94 E-value=73 Score=31.88 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=61.9
Q ss_pred eeccHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQT-HQICLKLASALAQLKISRGDIVAAMAPNIPAL--YKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el-~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+ ....... ....++.++|++...+|-...+ ...++..+..|+..+.+++..+.+.+...+++.++.+
T Consensus 201 v~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~ 277 (529)
T 2v7b_A 201 TVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTV 277 (529)
T ss_dssp EEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSE
T ss_pred EEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEE
Confidence 35788887 3322211 1125789999999988876544 3345778889999988877788999999999999999
Q ss_pred EEEeccchHHH
Q 008535 121 IFVDYQFVEVV 131 (562)
Q Consensus 121 ii~~~~~~~~~ 131 (562)
++........+
T Consensus 278 ~~~~P~~~~~l 288 (529)
T 2v7b_A 278 FYGVPTLYANM 288 (529)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 99887655443
No 84
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=35.89 E-value=1.1e+02 Score=29.06 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=38.4
Q ss_pred cCCCCCCEEEEEcCCcH------HHHHHHHHhh-hccceEEecCCCC------------CHHHHHHHHhhCCceEEEEec
Q 008535 65 LKISRGDIVAAMAPNIP------ALYKLHFAVP-MAGAVLSALNTRL------------DSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 65 ~gv~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 125 (562)
.-+++||+|+|++|.+. +-+-.....+ ..|..++.-+... ..+++..++.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 35899999999999974 2232333333 3677766543211 134566667777778888765
Q ss_pred c
Q 008535 126 Q 126 (562)
Q Consensus 126 ~ 126 (562)
-
T Consensus 118 G 118 (371)
T 3tla_A 118 G 118 (371)
T ss_dssp C
T ss_pred c
Confidence 3
No 85
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=35.40 E-value=1.4e+02 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=7.5
Q ss_pred HHhhCCceEEEEecc
Q 008535 112 ILRQLEAKIIFVDYQ 126 (562)
Q Consensus 112 ~l~~~~~~~ii~~~~ 126 (562)
.+...+.++++++..
T Consensus 141 ~~~~~G~~~~~v~~~ 155 (430)
T 3ri6_A 141 TLPSFGIEVRFVDVM 155 (430)
T ss_dssp HHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEeCCC
Confidence 444555555555443
No 86
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=35.02 E-value=69 Score=28.72 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCc
Q 008535 56 LKLASALAQLKISRGDIVAAMAPNI 80 (562)
Q Consensus 56 ~~~a~~L~~~gv~~gd~V~i~~~~~ 80 (562)
..+.+.|.++||++||.|.|++.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4677889999999999999998753
No 87
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=34.74 E-value=1.4e+02 Score=27.94 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=52.5
Q ss_pred ceEEEECC--eeccHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHH
Q 008535 36 ATSIIYGT--VRFSWRQTHQICLKLASALAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASI 112 (562)
Q Consensus 36 ~~a~~~~~--~~~Ty~el~~~~~~~a~~L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 112 (562)
++.+-.++ .+-||++.-.. .+...+.+.| +++|+.|+... .+-.-..+.++|...|..++.+-|...+..-...
T Consensus 43 ~v~~K~E~~~ptGSfKdR~a~--~~l~~a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 119 (343)
T 2pqm_A 43 RILVKLEYFNPMSSVKDRVGF--NIVYQAIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119 (343)
T ss_dssp EEEEEEGGGSTTSBTHHHHHH--HHHHHHHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCChHHHHHH--HHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 45554443 23455544221 2222333445 47777665554 4666667777788899876655444444555667
Q ss_pred HhhCCceEEEEecc
Q 008535 113 LRQLEAKIIFVDYQ 126 (562)
Q Consensus 113 l~~~~~~~ii~~~~ 126 (562)
++.+++.+++++..
T Consensus 120 ~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 120 MKAFGAELILTEGK 133 (343)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 88899999999864
No 88
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=34.28 E-value=1.9e+02 Score=28.66 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=62.7
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHhhhccceEEecCCC--CCHHHHHHHHhhCCceE
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPAL-YKLHFAVPMAGAVLSALNTR--LDSATLASILRQLEAKI 120 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 120 (562)
..+|.+.+...+..+... ...++.+++++....+-+... +..+++++..|+..+..+.. .....+...+.+.++.+
T Consensus 163 V~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 241 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI 241 (521)
T ss_dssp EEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred EEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence 358998887655433321 125778899888887766433 45567788899888877654 36788999999999999
Q ss_pred EEEeccchHHHH
Q 008535 121 IFVDYQFVEVVQ 132 (562)
Q Consensus 121 ii~~~~~~~~~~ 132 (562)
+.........+.
T Consensus 242 ~~~~P~~~~~l~ 253 (521)
T 3l8c_A 242 WTSTPSFADMAM 253 (521)
T ss_dssp EEECHHHHHHHH
T ss_pred EEeCCCHHHHHh
Confidence 998877655443
No 89
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=34.21 E-value=93 Score=28.62 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred eccHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEcCCc-HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 45 RFSWRQTHQICLK--LA-SALAQLKISRGDIVAAMAPNI-PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 45 ~~Ty~el~~~~~~--~a-~~L~~~gv~~gd~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
.+++.+...-... .| +.|...++++|++|+|....+ .-.+++.+|- ..|+.++.+. +.++ ...+++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677766443222 12 334557899999999997544 5555555554 5688766553 4444 56677788887
Q ss_pred EEEe
Q 008535 121 IFVD 124 (562)
Q Consensus 121 ii~~ 124 (562)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6654
No 90
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=33.92 E-value=1.8e+02 Score=26.51 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 62 LAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 62 L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
+.+.| +++|+.|+... .+-.-..+.++|.+.|..++.+-|...+..-...++.+++.+++++..
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445 36777666655 566667777778899987666555444455567888999999999863
No 91
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=33.28 E-value=1.6e+02 Score=27.33 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHh-hhccceEEecCCCC------------CHHHHHHHHhhCCceEEEEecc
Q 008535 66 KISRGDIVAAMAPNIP------ALYKLHFAV-PMAGAVLSALNTRL------------DSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 66 gv~~gd~V~i~~~~~~------~~~~~~lA~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
-+++||+|+|++|.+. +-+-..... -..|..++.-+... ..+++..++.+-++++|++..-
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999852 222222222 23476666543211 1356677777788888888653
No 92
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=32.76 E-value=1.2e+02 Score=21.07 Aligned_cols=48 Identities=29% Similarity=0.275 Sum_probs=33.7
Q ss_pred hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCC
Q 008535 467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS 524 (562)
Q Consensus 467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~ 524 (562)
..++++.|.++|+|.+|..+..+.. .++.+.. .+.+++.+++.+.+..
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-----~d~~~l~~~i~~~l~~ 62 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-----DTLKDLDQFITEKIRK 62 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-----SSHHHHHHHHHTTGGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-----CCHHHHHHHHHHHhcc
Confidence 4789999999999999988753221 3444443 4677888888766544
No 93
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=32.60 E-value=1.6e+02 Score=27.55 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=48.9
Q ss_pred eccHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcCCc-HHHHHHHHHhhhccceE-EecCCCCCHHHHHHHHhhCCc
Q 008535 45 RFSWRQTHQIC--LKLA-SALAQ-LKISRGDIVAAMAPNI-PALYKLHFAVPMAGAVL-SALNTRLDSATLASILRQLEA 118 (562)
Q Consensus 45 ~~Ty~el~~~~--~~~a-~~L~~-~gv~~gd~V~i~~~~~-~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~ 118 (562)
.+++.+...-. --.| ..|.+ .++++|++|+|....+ .-.+++.+|- ..|+.. +........++....+++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654321 1122 23434 5899999999999854 5555666655 468754 444444445555667788899
Q ss_pred eEEEEe
Q 008535 119 KIIFVD 124 (562)
Q Consensus 119 ~~ii~~ 124 (562)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888754
No 94
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=32.32 E-value=1.4e+02 Score=27.71 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHhh-hccceEEecCCC---------C---CHHHHHHHHhhCCceEEEEecc
Q 008535 66 KISRGDIVAAMAPNIP------ALYKLHFAVP-MAGAVLSALNTR---------L---DSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 66 gv~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~---------~---~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
-+++||+|+|++|.+. +-+-...+.+ ..|..++.-+.. . ..+++..++.+-++++|++..-
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999874 2232333333 357776654321 1 1345666777778888888653
No 95
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.57 E-value=1.7e+02 Score=27.15 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=37.8
Q ss_pred CCCCCCEEEEEcCCcH------HHHHHHHHhh-hccceEEecCCC---------C---CHHHHHHHHhhCCceEEEEecc
Q 008535 66 KISRGDIVAAMAPNIP------ALYKLHFAVP-MAGAVLSALNTR---------L---DSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 66 gv~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~---------~---~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
-+++||+|+|++|.+. +-+-.....+ ..|..++.-+.. . ..+++..++.+-++++|++..-
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4799999999999983 2232333333 357776653211 1 1345666777778888887654
No 96
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=31.51 E-value=94 Score=31.93 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=69.2
Q ss_pred cCCceEEEEC--C-------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecC-
Q 008535 33 YGDATSIIYG--T-------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALN- 101 (562)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~- 101 (562)
.|+.+|++.. + ..+|.+.+...+. .....++.++|++...+|-+.+ .+..++.++..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 3566665541 1 3588887754332 2234688999999999987643 3445788888898877763
Q ss_pred CCCCHHHHHHHHhhCCceEEEEeccchHHHHH
Q 008535 102 TRLDSATLASILRQLEAKIIFVDYQFVEVVQN 133 (562)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 133 (562)
...+++.+...+++.++..++........+..
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 35688999999999999999998877666544
No 97
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=31.30 E-value=1.7e+02 Score=27.22 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q 008535 68 SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR----LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 68 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 124 (562)
++||.|++..+....+.....++...|+.++.++.. .+.+.+...++. ++++++..
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 567777666555544444443444556665555432 345666666653 45655553
No 98
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=30.81 E-value=1.6e+02 Score=27.54 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC-------CCHHHHHHHHhhCCceEEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR-------LDSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~ 125 (562)
.++||.|++..+....+. .++...|+.++.++.. .+.+.+...++..++++++...
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 467888877666655433 3445678777776642 6788899888867788876543
No 99
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=30.75 E-value=1.6e+02 Score=27.83 Aligned_cols=60 Identities=15% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC----CCHHHHHHHHhhC--CceEEEEec
Q 008535 63 AQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR----LDSATLASILRQL--EAKIIFVDY 125 (562)
Q Consensus 63 ~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~~ 125 (562)
...++++||.|++..+.......+ +...|+.++.++.. .+.+.+...++.. ++++++...
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASVAP---ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGTHH---HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334578899998888877655433 33467776666532 4678888888764 567766543
No 100
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=29.53 E-value=2.6e+02 Score=25.82 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecC--CC----CCHHHHHHHHhh----CCceEEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN--TR----LDSATLASILRQ----LEAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~ii~~~ 125 (562)
+++||.|++..+........ +...|+.++.++ .+ .+.+.++..++. -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46889888887776655444 556777766665 22 367888888874 3667766644
No 101
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=29.21 E-value=1.8e+02 Score=27.21 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=42.9
Q ss_pred HHHH--cCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 61 ALAQ--LKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 61 ~L~~--~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
.|.+ .++++|++|+|...-..-.+++.+|-.+.|+.++.+.. +.+.+ ..+++.+++.++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEeccc
Confidence 3555 78999999999999666666777766543877665543 34443 4456788888876443
No 102
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=29.20 E-value=1.1e+02 Score=21.24 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=32.3
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccce
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAV 96 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (562)
..+.+.+|.+ .+.+.++.+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4566766654 344556778889999999888777777777777753
No 103
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=28.69 E-value=39 Score=30.57 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=23.2
Q ss_pred eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 008535 44 VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNI 80 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~ 80 (562)
..+|-.+ +.+.|.++||++||.|.|++.-+
T Consensus 20 ~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDR-------LASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHH-------HHHHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHH-------HHHHHHHcCCCCCCEEEEEechH
Confidence 3466555 56778899999999999998743
No 104
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=28.43 E-value=40 Score=30.43 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCCCEEEEEcCCc
Q 008535 57 KLASALAQLKISRGDIVAAMAPNI 80 (562)
Q Consensus 57 ~~a~~L~~~gv~~gd~V~i~~~~~ 80 (562)
.+.+.|.++||++||.|.|++.-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 467889999999999999998744
No 105
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=28.32 E-value=1.8e+02 Score=29.14 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=45.6
Q ss_pred HHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEec
Q 008535 63 AQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 63 ~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 125 (562)
.+.| +++|+.|+. ...+-.-..+.++|...|..++.+-|...+..-...++.+++.++++..
T Consensus 105 ~~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 105 EEQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 3455 578887755 5667777888888989998866655555555666788999999999865
No 106
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=27.81 E-value=2.2e+02 Score=26.17 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=54.7
Q ss_pred CCceEEEECCe--eccHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHH
Q 008535 34 GDATSIIYGTV--RFSWRQTHQICLKLASALAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLA 110 (562)
Q Consensus 34 p~~~a~~~~~~--~~Ty~el~~~~~~~a~~L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (562)
+.++.+-.++. +-|+++--.. ..+. .+.+.| +++|...++....+-.-..+.++|.+.|..++.+-|...+..-.
T Consensus 29 g~~v~~K~E~~~ptGSfK~R~a~-~~l~-~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 106 (322)
T 1z7w_A 29 VGRVAAKLEMMEPCSSVKDRIGF-SMIS-DAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106 (322)
T ss_dssp SSEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CceEEEEecccCCCCchHHHHHH-HHHH-HHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 34555545442 2344443221 1222 234555 46675334445677777888888889998766655444445556
Q ss_pred HHHhhCCceEEEEecc
Q 008535 111 SILRQLEAKIIFVDYQ 126 (562)
Q Consensus 111 ~~l~~~~~~~ii~~~~ 126 (562)
..++.+++++++++..
T Consensus 107 ~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 107 IILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 7888999999998764
No 107
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=27.38 E-value=1.5e+02 Score=27.86 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=32.8
Q ss_pred HcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecC--CC---CCHHHHHHHHhhCCceEEEEe
Q 008535 64 QLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN--TR---LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 64 ~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~---~~~~~l~~~l~~~~~~~ii~~ 124 (562)
..++++||.|++..+...... .++...|+.++.++ +. ...+.++..++. ++++++..
T Consensus 73 ~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 73 ALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 344677887777766655443 23345666555544 22 456777776654 56666653
No 108
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=27.20 E-value=3.2e+02 Score=25.52 Aligned_cols=55 Identities=16% Similarity=0.191 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhC---CceEEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQL---EAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~ 125 (562)
.++||.|++..|....+.- ++...|+.+++++. .+.+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 4678888777776654433 34456777777754 5677788887765 567777654
No 109
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=27.07 E-value=1.1e+02 Score=28.76 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=41.4
Q ss_pred CCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH
Q 008535 70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129 (562)
Q Consensus 70 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 129 (562)
.+.|+. ...+-.-..+.++|.+.|..++.+-|...+..-...++.+++.+++++....+
T Consensus 76 ~~~vv~-~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~ 134 (346)
T 3l6b_A 76 PKAVVT-HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDES 134 (346)
T ss_dssp CSCEEE-ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 344433 34577777788889999987665555545556677889999999999876443
No 110
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=27.01 E-value=2.2e+02 Score=26.75 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q 008535 66 KISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR-----LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 66 gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~ 124 (562)
++++||.|++..+....... ++...|+.++.++.+ .+.+.++..++. ++++++..
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 68899999888777665544 344577766555432 367888887765 56776663
No 111
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=26.52 E-value=1.3e+02 Score=21.90 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHcC--------------CceEEEECCeeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 008535 19 PLTPIDFLERAAHVYG--------------DATSIIYGTVRFSWRQTHQICLKLASALAQLKISRGDIVAAMAP 78 (562)
Q Consensus 19 ~~ti~~~l~~~a~~~p--------------~~~a~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~ 78 (562)
..|+.+++++....+| ..+++..+++.+.+ +.-++.||.|+++-|
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECC
Confidence 3699999999888875 44556666666641 457899999999866
No 112
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=25.78 E-value=2.2e+02 Score=21.68 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEec--CCCCCHHHHH
Q 008535 58 LASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSAL--NTRLDSATLA 110 (562)
Q Consensus 58 ~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~ 110 (562)
.+.+|.+.|+.+...+.+...+..+.+-++-=|++.|...+-+ .+..+..+.+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~R 100 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 100 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 4667888999888877777777888888888888888643322 3456655443
No 113
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=25.72 E-value=2.9e+02 Score=25.28 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=38.0
Q ss_pred cCCCCCCEEEEEcCCc-HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEe
Q 008535 65 LKISRGDIVAAMAPNI-PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 65 ~gv~~gd~V~i~~~~~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 124 (562)
.++++|++|+|....+ .-..++.+| ...|+.++.+.. +.+.+. .+++.+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4899999999999655 444454444 457887776654 344544 5677888877754
No 114
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.67 E-value=1.2e+02 Score=20.93 Aligned_cols=48 Identities=29% Similarity=0.154 Sum_probs=33.1
Q ss_pred hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCC
Q 008535 467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPS 524 (562)
Q Consensus 467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~ 524 (562)
..++++.|.++|+|.+|..+..+. -.++.+.. .+.+++.+++.+.+..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~-----d~l~~v~~-----~d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY-----DIVVKVEA-----DSMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC-----SEEEEEEC-----SSHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC-----CEEEEEEE-----CCHHHHHHHHHHHhcC
Confidence 378899999999999998874322 14444442 4677888888765543
No 115
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=25.38 E-value=1.4e+02 Score=28.26 Aligned_cols=58 Identities=14% Similarity=0.004 Sum_probs=42.1
Q ss_pred EEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHH
Q 008535 73 VAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEV 130 (562)
Q Consensus 73 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~ 130 (562)
.++....+-.-..+.++|.+.|..++.+-|...+......++.+++.+++++....+.
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a 152 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEA 152 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTHH
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 3444555777788888888999876666555555667788899999999998755443
No 116
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=25.32 E-value=2.4e+02 Score=26.62 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR----LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 124 (562)
+++||.|++..+...... ..-++...|+.++.++.. .+.+.++..+++.++++++..
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 143 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV 143 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE
Confidence 455666655554433211 122233445444333221 245566666654444555543
No 117
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=25.05 E-value=3.5e+02 Score=25.52 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC----CCHHHHHHHHhhCCceEEEEe
Q 008535 68 SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR----LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 68 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~ 124 (562)
++||.|++..+....+...+..+-..|+.++.++.+ .+.+.++..++. ++++++..
T Consensus 111 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 170 (423)
T 3lvm_A 111 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD-DTILVSIM 170 (423)
T ss_dssp TTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT-TEEEEECC
T ss_pred cCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC-CcEEEEEe
Confidence 468888877776666555444445557666555432 356777777754 56666654
No 118
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.97 E-value=2e+02 Score=26.62 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=45.7
Q ss_pred eccHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 45 RFSWRQTHQICLKL---ASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 45 ~~Ty~el~~~~~~~---a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
.+++.+...-.... -+.|.+.++++|++|+|...-..-.+++.+|- ..|+.++.+..+.. . ...+++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~--~-~~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEH--K-KQDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSST--T-HHHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHH--H-HHHHHhcCCCee
Confidence 46776654222111 23455678999999999987555666666655 56887666654332 2 234566788877
Q ss_pred E
Q 008535 122 F 122 (562)
Q Consensus 122 i 122 (562)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 119
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=24.94 E-value=1.7e+02 Score=27.13 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=50.1
Q ss_pred ccHHHHHHHHHHH---HHHHHHc--CCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 46 FSWRQTHQICLKL---ASALAQL--KISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 46 ~Ty~el~~~~~~~---a~~L~~~--gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
+++.+...-.... .+.|.+. ++++|++|+|...-..-.+++.+|-.+-|+.++.++. +.+. ..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 7776654332221 2334443 7899999999998666777777777665666666643 3333 44667888888
Q ss_pred EEEecc
Q 008535 121 IFVDYQ 126 (562)
Q Consensus 121 ii~~~~ 126 (562)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876543
No 120
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=24.50 E-value=2.6e+02 Score=25.83 Aligned_cols=58 Identities=9% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC----CCHHHHHHHHhhCCceEEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR----LDSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 125 (562)
+++||.|++..+..... ...-.+...|+.++.++.. .+.+.++..++..++++++...
T Consensus 74 ~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 57899888776644321 1222334567766655433 4788899988887788877654
No 121
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=24.45 E-value=1.5e+02 Score=21.09 Aligned_cols=49 Identities=27% Similarity=0.226 Sum_probs=34.2
Q ss_pred hHHHHHHHhcCCCceeEEEEeeeCCCCCceeEEEEEeCCCCCCCHHHHHHHHhccCCCC
Q 008535 467 SLEVEAVLLSNPKVLEAAVVGKVDDQLKEVPVAFVKLKEGREASPEELVTFCGDELPSC 525 (562)
Q Consensus 467 ~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~v~~v~~~~~~~~~~~~l~~~~~~~l~~~ 525 (562)
..++++.|.++|+|.+|..+..+.. .++.+.. .+.+++.+++.+.+...
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~-----~d~~~l~~~l~~~l~~~ 63 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRL-----KDVEELDDVVTQGILSL 63 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEE-----SSGGGHHHHCCCCCTTS
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEE-----CCHHHHHHHHHHhcccC
Confidence 5788899999999999998853221 4444443 35668888887666543
No 122
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=24.40 E-value=3.6e+02 Score=24.35 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=40.7
Q ss_pred HHHHcCC-CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 61 ALAQLKI-SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 61 ~L~~~gv-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
.+.+.|. +++ . +-...+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++..
T Consensus 57 ~a~~~g~~~~~-v--v~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 57 DAEKRGLLKNG-I--VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp HHHHTTCCTTC-E--EEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCC-E--EEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344554 344 2 3445566666777778889987655544434455566788999999998764
No 123
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=24.22 E-value=2.9e+02 Score=26.43 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=8.5
Q ss_pred CCCceEeechhHHH
Q 008535 211 DPKGVVYSHRGAYL 224 (562)
Q Consensus 211 ~PK~v~~t~~~l~~ 224 (562)
.+-|+.......+.
T Consensus 235 ~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 235 VLGGAILGDREYID 248 (414)
T ss_dssp CCCEEEEECHHHHT
T ss_pred ceEEEEEECHHHHH
Confidence 34577777766544
No 124
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.06 E-value=1.6e+02 Score=27.14 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=48.7
Q ss_pred eccHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEE
Q 008535 45 RFSWRQTHQICLK---LASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKII 121 (562)
Q Consensus 45 ~~Ty~el~~~~~~---~a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 121 (562)
.+++.+...-... ..+.|...++++|++|+|....+.-.+++.+|- ..|+.++.+.. +.+.+ ..+++.+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCEE
Confidence 4677665422221 123455578999999999987556666666665 45887666643 34443 45677888887
Q ss_pred EEec
Q 008535 122 FVDY 125 (562)
Q Consensus 122 i~~~ 125 (562)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 125
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=23.96 E-value=1.6e+02 Score=27.47 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=4.7
Q ss_pred CCCEEEEEcCC
Q 008535 69 RGDIVAAMAPN 79 (562)
Q Consensus 69 ~gd~V~i~~~~ 79 (562)
+||.|++..+.
T Consensus 87 ~gd~Vl~~~~~ 97 (382)
T 4eb5_A 87 KGKHILVSAVE 97 (382)
T ss_dssp GCCEEEEETTC
T ss_pred CCCEEEECCCc
Confidence 34444444433
No 126
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.90 E-value=2.3e+02 Score=26.13 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=45.6
Q ss_pred HHHcC-CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 62 LAQLK-ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 62 L~~~g-v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
+.+.| +++++.|+.. ..+-.-..+.++|.+.|..++.+-|...+......++.+++.+++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 4677776554 5577778888888889987665555545555567889999999999863
No 127
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.83 E-value=3.8e+02 Score=23.88 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCceEEEECC------eeccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH
Q 008535 24 DFLERAAHVYGDATSIIYGT------VRFSWRQTHQICLKLASALAQLKISRGDIVAAMAPNIPALY 84 (562)
Q Consensus 24 ~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~~~~~~~ 84 (562)
..+++..+..|+...+...+ ..-|..++.+.+.+.+..|.+.|.+ ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 45666677889987776544 4579999999999999999998764 667777777754
No 128
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=23.18 E-value=2.4e+02 Score=26.27 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecC--CC--CCHHHHHHHHhh-CCceEEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALN--TR--LDSATLASILRQ-LEAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~--~~~~~l~~~l~~-~~~~~ii~~~ 125 (562)
+++||.|++..+...... ..-.+-..|+.++.++ +. .+.+.++..++. -++++++...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 467888877776554432 1112234566554443 32 567888888864 3567776543
No 129
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=23.12 E-value=3.9e+02 Score=24.63 Aligned_cols=57 Identities=11% Similarity=0.000 Sum_probs=35.0
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCC-C----CCHHHHHHHHhhCCceEEEEec
Q 008535 68 SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNT-R----LDSATLASILRQLEAKIIFVDY 125 (562)
Q Consensus 68 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~-~----~~~~~l~~~l~~~~~~~ii~~~ 125 (562)
++||.|++..+....... .-++...|+.++.++. . .+.+.++..++..++++++...
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 145 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTH 145 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEc
Confidence 689988777444433322 1234556777665544 2 4678888888765667777643
No 130
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=22.73 E-value=2.8e+02 Score=26.31 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHH-hhhccceEEecCCCCCHHHHHHHHhhCCceEEEE
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFA-VPMAGAVLSALNTRLDSATLASILRQLEAKIIFV 123 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA-~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 123 (562)
+++||.|++..+........+.. +-..|+.++.++.+ .+.++..++. ++++++.
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~ 146 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFV 146 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEE
Confidence 45677776666655443333222 44456666655543 5566655543 4555555
No 131
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=22.61 E-value=1.4e+02 Score=19.96 Aligned_cols=33 Identities=3% Similarity=0.063 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCceEEEECCeeccHHHHHHH
Q 008535 22 PIDFLERAAHVYGDATSIIYGTVRFSWRQTHQI 54 (562)
Q Consensus 22 i~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~ 54 (562)
+...|....+..|+...++..++..+|+.+.+-
T Consensus 32 L~~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~v 64 (74)
T 2jwk_A 32 VTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKA 64 (74)
T ss_dssp HHHHHHHHHHHCTTCCEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHH
Confidence 344455555566776667777777777666543
No 132
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=22.58 E-value=2.9e+02 Score=25.73 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=28.4
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCC----CCCHHHHHHHHhhCCceEEEE
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNT----RLDSATLASILRQLEAKIIFV 123 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~----~~~~~~l~~~l~~~~~~~ii~ 123 (562)
+++||.|++..+....+. ..-++...|+.++.++. ..+.+.+...++..++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~ 149 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFL 149 (396)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEE
T ss_pred cCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 356777666666544432 11233445555444432 245666666665434555554
No 133
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=22.24 E-value=2.1e+02 Score=26.63 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=4.8
Q ss_pred ceEeechhH
Q 008535 214 GVVYSHRGA 222 (562)
Q Consensus 214 ~v~~t~~~l 222 (562)
|..+....+
T Consensus 229 G~~~~~~~~ 237 (390)
T 1elu_A 229 GGLYIHGDC 237 (390)
T ss_dssp EEEEECTTT
T ss_pred EEEEECHHh
Confidence 555555543
No 134
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.16 E-value=1.6e+02 Score=27.39 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=6.7
Q ss_pred CCCEEEEEcCCcHHH
Q 008535 69 RGDIVAAMAPNIPAL 83 (562)
Q Consensus 69 ~gd~V~i~~~~~~~~ 83 (562)
+||.|++..+..+.+
T Consensus 87 ~gd~vi~~~~~~~~~ 101 (382)
T 4hvk_A 87 KGKHILVSAVEHMSV 101 (382)
T ss_dssp GCCEEEEETTCCHHH
T ss_pred CCCEEEECCCCcHHH
Confidence 455554444444433
No 135
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=22.05 E-value=4.7e+02 Score=24.09 Aligned_cols=54 Identities=7% Similarity=-0.041 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCC--C--CCHHHHHHHHhhCCceEEEE
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNT--R--LDSATLASILRQLEAKIIFV 123 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~ii~ 123 (562)
.++||.|++..+....+.- ++...|+.++.++. . .+.+.++..++..++++++.
T Consensus 120 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~ 177 (397)
T 3f9t_A 120 KNEHPKIIVPITAHFSFEK---GREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIG 177 (397)
T ss_dssp CCSSCEEEEETTCCTHHHH---HHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEE
T ss_pred CCCCeEEEECCcchhHHHH---HHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEE
Confidence 3457777776665554322 23334555544433 2 36677777777645555553
No 136
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=21.92 E-value=1.8e+02 Score=28.41 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=45.7
Q ss_pred eccHHHHHHHHHH--HHH-HHHH---cCCCCCCEEEEEcCCcH-HHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCC
Q 008535 45 RFSWRQTHQICLK--LAS-ALAQ---LKISRGDIVAAMAPNIP-ALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE 117 (562)
Q Consensus 45 ~~Ty~el~~~~~~--~a~-~L~~---~gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 117 (562)
.+++.+...-... .|. .|.. .++++|++|+|....+. -.+++.+| ...|+..+.+.. +.+.+ ..+++.+
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~-~~~~~lG 273 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKA-EICRAMG 273 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHH-HHHHHHT
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHH-HHHHhhC
Confidence 4777775432222 222 2322 57899999999998554 44444444 457887666652 44444 4557778
Q ss_pred ceEEEEe
Q 008535 118 AKIIFVD 124 (562)
Q Consensus 118 ~~~ii~~ 124 (562)
++.++..
T Consensus 274 a~~vi~~ 280 (456)
T 3krt_A 274 AEAIIDR 280 (456)
T ss_dssp CCEEEET
T ss_pred CcEEEec
Confidence 8777653
No 137
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.85 E-value=2.4e+02 Score=22.93 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc
Q 008535 59 ASALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA 95 (562)
Q Consensus 59 a~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 95 (562)
+.+|.+.|+.+...+.|...+..+.+-++-=|++.|.
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~ 125 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGR 125 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCC
Confidence 3344445554444444444444444444444444443
No 138
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.72 E-value=1.6e+02 Score=27.55 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=47.5
Q ss_pred eccHHHHHHHH--HHHH-HHHHH-cCCCCC-CEEEEEcCC-cHHHHHHHHHhhhccceEEecCCCCCH-HHHHHHHhhCC
Q 008535 45 RFSWRQTHQIC--LKLA-SALAQ-LKISRG-DIVAAMAPN-IPALYKLHFAVPMAGAVLSALNTRLDS-ATLASILRQLE 117 (562)
Q Consensus 45 ~~Ty~el~~~~--~~~a-~~L~~-~gv~~g-d~V~i~~~~-~~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~ 117 (562)
.+++.+...-. -..| +.|.+ .++++| ++|+|.... ..-.+++.+|- ..|+..+.+...... ++....+++.+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 47777643321 1222 23444 379999 999999984 45566666665 468766555433222 34445557888
Q ss_pred ceEEEEe
Q 008535 118 AKIIFVD 124 (562)
Q Consensus 118 ~~~ii~~ 124 (562)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8887754
No 139
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=21.67 E-value=3.1e+02 Score=25.65 Aligned_cols=20 Identities=0% Similarity=0.310 Sum_probs=9.9
Q ss_pred CHHHHHHHHhhCCceEEEEe
Q 008535 105 DSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 105 ~~~~l~~~l~~~~~~~ii~~ 124 (562)
..+.++..++..++++++..
T Consensus 126 d~~~l~~~i~~~~~~~v~~~ 145 (411)
T 3nnk_A 126 TPDQVEDAVKRIRPRLLLTV 145 (411)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred CHHHHHHHHhhCCCeEEEEe
Confidence 44555555554344544443
No 140
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=21.31 E-value=3.7e+02 Score=25.14 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc-eEEecCCCCCHHHHHHHHhhCCceEEEE
Q 008535 61 ALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA-VLSALNTRLDSATLASILRQLEAKIIFV 123 (562)
Q Consensus 61 ~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 123 (562)
.|...++++|++|+|...-..-.+++.+|- ..|+ .++.+.. +++. ..++++.+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 355678999999999988545555555555 5787 5665543 3333 34566778877664
No 141
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=21.18 E-value=1.9e+02 Score=28.16 Aligned_cols=100 Identities=11% Similarity=-0.001 Sum_probs=61.5
Q ss_pred CceEEEECC--e-eccHHHH--HHHHHHHHHHH-HHcCC-CCCC----------------EEEEEcCCcHHHHHHHHHhh
Q 008535 35 DATSIIYGT--V-RFSWRQT--HQICLKLASAL-AQLKI-SRGD----------------IVAAMAPNIPALYKLHFAVP 91 (562)
Q Consensus 35 ~~~a~~~~~--~-~~Ty~el--~~~~~~~a~~L-~~~gv-~~gd----------------~V~i~~~~~~~~~~~~lA~~ 91 (562)
.++.+-.++ . +=||++- ...+.+++..+ .+.|+ ++|+ +.++....+-.-..+.++|.
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa 180 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA 180 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHH
Confidence 445555543 2 3356553 33344444443 34564 5665 35566666777778888889
Q ss_pred hccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHHHHH
Q 008535 92 MAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVVQNA 134 (562)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 134 (562)
++|..++.+-|...+..-...++.+++.+++++....+....+
T Consensus 181 ~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a 223 (442)
T 3ss7_X 181 RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEG 223 (442)
T ss_dssp HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHH
T ss_pred HhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
Confidence 9998765554444445566778999999999987655444433
No 142
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.12 E-value=1.9e+02 Score=26.49 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=40.9
Q ss_pred CCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchH
Q 008535 70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVE 129 (562)
Q Consensus 70 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 129 (562)
++.|+. ...+-.-..+.++|.+.|..++.+-|...+......++.+++++++++....+
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~ 112 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDE 112 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHH
Confidence 444444 44577777778888899987666555444456667888999999998865433
No 143
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.96 E-value=5e+02 Score=24.58 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=42.5
Q ss_pred EEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEeccchHHH
Q 008535 74 AAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQFVEVV 131 (562)
Q Consensus 74 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 131 (562)
++....+-.-..+.++|.+.|..++.+-|...+......++.+++.+++++....+..
T Consensus 115 vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~ 172 (398)
T 4d9i_A 115 FATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTV 172 (398)
T ss_dssp EEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 3346667777888888999998876665555556667778999999999987654433
No 144
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=20.89 E-value=2.4e+02 Score=27.21 Aligned_cols=59 Identities=7% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCCCEEEEEc-CCcHHHHHHH--------HHhhhccceEEecCCC----CCHHHHHHHHhh-CCceEEEEec
Q 008535 67 ISRGDIVAAMA-PNIPALYKLH--------FAVPMAGAVLSALNTR----LDSATLASILRQ-LEAKIIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~-~~~~~~~~~~--------lA~~~~G~~~v~l~~~----~~~~~l~~~l~~-~~~~~ii~~~ 125 (562)
+++||.|++.. +.-....-.+ -.+...|+.+..++.+ .+.+.++..+++ -++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 57899887765 3322222222 2344568888877653 678889988875 5788888876
No 145
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=20.84 E-value=7.3e+02 Score=25.85 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=40.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC---------C-----CHHHHHHHHhhC-Cce----EEEEec
Q 008535 67 ISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR---------L-----DSATLASILRQL-EAK----IIFVDY 125 (562)
Q Consensus 67 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~---------~-----~~~~l~~~l~~~-~~~----~ii~~~ 125 (562)
+++||.|++.-++.....- ++.+.|+.++.+++. . +.+.++..++.. +.+ +++++.
T Consensus 232 ~~pGD~VLv~r~~H~S~~~---~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLTH---LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCCHHHHH---HHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCccHHHHH---HHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 6899999888777665443 678899999988763 2 588899988764 333 555554
No 146
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=20.84 E-value=1.3e+02 Score=30.33 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=62.3
Q ss_pred eeccHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEcCCcHH-HHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCC
Q 008535 44 VRFSWRQTHQICLKLASALA-----QLKISRGDIVAAMAPNIPA-LYKLHFAVPMAGAVLSALNTRLDSATLASILRQLE 117 (562)
Q Consensus 44 ~~~Ty~el~~~~~~~a~~L~-----~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 117 (562)
..+|.+.+...+..++..+. ...+...+++....+.... .+..++.++..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 35899999888888777664 2457788888887776643 34446778888988877654444566778899999
Q ss_pred ceEEEEeccch
Q 008535 118 AKIIFVDYQFV 128 (562)
Q Consensus 118 ~~~ii~~~~~~ 128 (562)
+.+++......
T Consensus 273 ~t~~~~~P~~l 283 (562)
T 3ite_A 273 VTHAGIVPSLL 283 (562)
T ss_dssp CCEEEECHHHH
T ss_pred CCEEEcCHHHH
Confidence 99998877643
No 147
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.68 E-value=2.2e+02 Score=26.93 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=5.5
Q ss_pred CceEeechhHH
Q 008535 213 KGVVYSHRGAY 223 (562)
Q Consensus 213 K~v~~t~~~l~ 223 (562)
-|+.+....+.
T Consensus 238 ~G~~~~~~~~~ 248 (420)
T 1t3i_A 238 IGFLYGKEEIL 248 (420)
T ss_dssp CEEEEECHHHH
T ss_pred eEEEEEchHHH
Confidence 45555555443
No 148
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.65 E-value=3.8e+02 Score=22.54 Aligned_cols=57 Identities=5% Similarity=0.047 Sum_probs=43.3
Q ss_pred CCEEEEEcCCc----HHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEEecc
Q 008535 70 GDIVAAMAPNI----PALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFVDYQ 126 (562)
Q Consensus 70 gd~V~i~~~~~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 126 (562)
+-+|++.+..+ .-..+....+-..|.-++.+....+.+++...+++.++++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 33666665543 3444455555578999999999999999999999999999998764
No 149
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.60 E-value=2e+02 Score=26.83 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=46.9
Q ss_pred eccHHHHHHHHHH--H-HHHHHHcCCC-CCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceE
Q 008535 45 RFSWRQTHQICLK--L-ASALAQLKIS-RGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 45 ~~Ty~el~~~~~~--~-a~~L~~~gv~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
.+++.+....... . -+.|.+.+++ +|++|+|...-..-.+++.+|-. .|+.++.+..+ .+.+....++.+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 4677664321111 1 1335567888 99999999875566666666654 58766555443 334444445788877
Q ss_pred EEEec
Q 008535 121 IFVDY 125 (562)
Q Consensus 121 ii~~~ 125 (562)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 76543
No 150
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.46 E-value=1.4e+02 Score=23.60 Aligned_cols=9 Identities=0% Similarity=0.080 Sum_probs=5.4
Q ss_pred CCceEEEEC
Q 008535 34 GDATSIIYG 42 (562)
Q Consensus 34 p~~~a~~~~ 42 (562)
|.++|++-.
T Consensus 13 p~~IavIGa 21 (145)
T 2duw_A 13 TRTIALVGA 21 (145)
T ss_dssp CCCEEEESC
T ss_pred CCEEEEECc
Confidence 666666654
No 151
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=20.33 E-value=3e+02 Score=25.45 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=24.5
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCceEEEE
Q 008535 68 SRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAKIIFV 123 (562)
Q Consensus 68 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 123 (562)
++||.|++..|....+.- ++...|+.++.++ .+.+.++..++. ++++++.
T Consensus 111 ~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 111 DDGDEVLIQNPCYPCYKN---FIRFLGAKPVFCD--FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp CTTCEEEEESSCCTHHHH---HHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEE
T ss_pred CCCCEEEEeCCCchhHHH---HHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEE
Confidence 456666555554433322 2334555555554 455555555543 4444443
No 152
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=20.23 E-value=2.7e+02 Score=25.84 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=45.9
Q ss_pred eccHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccc-eEEecCCCCCHHHHHHHHhhCCceE
Q 008535 45 RFSWRQTHQICLKLA---SALAQLKISRGDIVAAMAPNIPALYKLHFAVPMAGA-VLSALNTRLDSATLASILRQLEAKI 120 (562)
Q Consensus 45 ~~Ty~el~~~~~~~a---~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (562)
.+++.+..- ..-++ +.|...++++|++|+|...-+.-.+++.+|- ..|+ .++.+.. +.+. ..++++.+++.
T Consensus 145 ~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCCE
Confidence 467766432 22222 2344568999999999997555666666665 4687 5555543 3333 34556788887
Q ss_pred EEEe
Q 008535 121 IFVD 124 (562)
Q Consensus 121 ii~~ 124 (562)
++..
T Consensus 220 vi~~ 223 (356)
T 1pl8_A 220 VLQI 223 (356)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 7654
No 153
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=20.13 E-value=1.7e+02 Score=27.87 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHcCCCCCCEEEEEcCCcHHHHHHHHHhhhccceEEecCCC-----CCHHHHHHHHhhCCceEEEEe
Q 008535 63 AQLKISRGDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTR-----LDSATLASILRQLEAKIIFVD 124 (562)
Q Consensus 63 ~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~ 124 (562)
...++++||.|++..+......- ++...|+.++.++.+ .+.+.+...++. ++++++..
T Consensus 75 ~~~~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 137 (418)
T 2c81_A 75 EALGIGEGDEVIVPSLTWIATAT---AVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV 137 (418)
T ss_dssp HHTTCCTTCEEEEESSSCTHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB
T ss_pred HHcCCCCcCEEEECCCccHhHHH---HHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe
Confidence 33446777877777666554432 334566665554432 245666555543 45555543
No 154
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.08 E-value=1.6e+02 Score=23.07 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCEEEEEcCCcHHHHHHHHHhhhccceEEecCCCCCHHHHHHHHhhCCce
Q 008535 70 GDIVAAMAPNIPALYKLHFAVPMAGAVLSALNTRLDSATLASILRQLEAK 119 (562)
Q Consensus 70 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 119 (562)
-|.|.++.| .....-.+..|..+|...+.+.+....+++....++.+..
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCE
Confidence 466666666 4444445556666776666666655566777777776665
Done!