Query 008538
Match_columns 562
No_of_seqs 370 out of 2447
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 05:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f35_D Transporter, NADC famil 100.0 1E-53 3.5E-58 456.3 38.4 415 119-557 28-449 (449)
2 4f35_D Transporter, NADC famil 99.7 3.2E-17 1.1E-21 174.3 18.7 170 144-331 279-449 (449)
3 3kcu_A Probable formate transp 71.6 73 0.0025 30.5 17.3 97 154-252 98-208 (285)
4 3kly_A Putative formate transp 38.1 1.3E+02 0.0043 28.7 9.0 94 157-252 100-207 (280)
5 3tds_E Formate/nitrite transpo 32.1 3.3E+02 0.011 25.7 16.5 65 130-194 71-135 (268)
6 2nwl_A GLTPH, glutamate sympor 12.5 5.5E+02 0.019 25.8 8.3 61 238-311 281-342 (422)
7 2l8s_A Integrin alpha-1; trans 8.7 5.2E+02 0.018 17.8 5.2 20 316-335 20-41 (54)
8 3dh4_A Sodium/glucose cotransp 7.9 1.6E+03 0.054 22.9 11.0 21 374-394 125-145 (530)
9 4fc4_A Nitrite transporter NIR 6.7 1.4E+03 0.047 21.1 15.1 65 129-193 64-128 (261)
10 4av3_A K(+)-stimulated pyropho 5.4 5E+02 0.017 28.3 4.4 14 356-369 60-73 (735)
No 1
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=100.00 E-value=1e-53 Score=456.29 Aligned_cols=415 Identities=18% Similarity=0.280 Sum_probs=351.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 119 VSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIA 198 (562)
Q Consensus 119 lt~~~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la 198 (562)
.+++++..++++++++++|++|.+|..++++++..++.++|+.++||++++++++++++++|+++++.+++|||+.||++
T Consensus 28 ~~~~~~~~lai~~~~~~lw~te~iP~~vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA 107 (449)
T 4f35_D 28 FEHNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIA 107 (449)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhc
Q 008538 199 YQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS 278 (562)
Q Consensus 199 ~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~ 278 (562)
+++.++.|++++++.+.+++.+.++|++++|+++++ ++.|+..+++++.+.+++ |+..+.++++.++++++||.
T Consensus 108 ~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~--~~~Pi~~~i~~~~~~~~~----~~~~~~lll~~~~aa~igg~ 181 (449)
T 4f35_D 108 DKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAA--MMLPLVLGVLSKVDADKQ----RSTYVFVLLGVAYSASIGGI 181 (449)
T ss_dssp HHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHH--HHHHHHHHHSCSCCCSSC----CSSTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHH--HhchHHHHHHHHHhhccc----hhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999988765 899999999999988775 33344677889999999999
Q ss_pred ccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhH
Q 008538 279 MFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNE 358 (562)
Q Consensus 279 ~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 358 (562)
.+++|+++|.+..+ +.+++|.||++.+.|++++.+++.+.+.++++|++.++.++ +.++..+.+++|
T Consensus 182 ~t~ig~~~N~i~~~------~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~ 248 (449)
T 4f35_D 182 ATLVGSPPNAIAAA------EVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFE-------LDRAPVNWDKGK 248 (449)
T ss_dssp SSSSSSHHHHHHHH------HHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------CCCCCTH
T ss_pred cccCcCCCcccccc------cccccHHHhhhhcCchHHHHHHHHHHHHHHHhcccccccch-------hhccchhhhHHH
Confidence 99999999998764 34689999999999999999999999999999887644322 223344566778
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCC--CchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhC
Q 008538 359 KIMAGTLLLTVGLWVFGG-----RLN--VDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYG 431 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~-----~~~--i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG 431 (562)
+.....+..++++|+... .++ .+...+++.++.++...++.++||+. +++||+++++++|+++++.+++++|
T Consensus 249 ~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~-~~i~W~~l~~~~g~~~l~~~l~~sG 327 (449)
T 4f35_D 249 VVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQ-KTADWGVLLLFGGGLCLSNVLKQTG 327 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhh-cccCchHHHHhhhHHHHhHHHHhcC
Confidence 888888888777776542 223 33456667777777788999999986 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcc
Q 008538 432 LITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGL 511 (562)
Q Consensus 432 ~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~ 511 (562)
+.+|+++.+.+..++.+. ... ..+........++|.||++.+.++.|++.++++..|+||..+.++.++++++ +++
T Consensus 328 ~~~~la~~l~~~~~~~~~--~~~-~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~-~~~ 403 (449)
T 4f35_D 328 TSVFLANALSDMVSHMGI--FVV-ILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFM 403 (449)
T ss_dssp HHHHHHHHHHHHHHTTCS--HHH-HHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHC-CCS
T ss_pred CHHHHHHHHhhhcccchH--HHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhH
Confidence 999999999988776543 222 2222222223468999999999999999999999999999999999999986 899
Q ss_pred cccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 512 THYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 512 tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
+|+++++|.+++|.|+++++||+|.|+|+++++.++...+.+.|||
T Consensus 404 ~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 404 LPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp SSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999997
No 2
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=99.74 E-value=3.2e-17 Score=174.31 Aligned_cols=170 Identities=10% Similarity=0.093 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhh
Q 008538 144 LGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGS-SSLGLGYSLVFSEAL 222 (562)
Q Consensus 144 ~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~-~~~~~~~~l~~~~~~ 222 (562)
....++.+..++...|..++||+.++++|++++++.|++.++++++++|+.+++++.+....++ ++......+...+.+
T Consensus 279 ~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
T 4f35_D 279 DTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVF 358 (449)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999999999999999999999999877644 555666677777888
Q ss_pred hhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCc
Q 008538 223 LAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPI 302 (562)
Q Consensus 223 ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~i 302 (562)
++.+.+|++.++ ++.|++.+++++.|.||. .+++..+++++. +.++|+|+++|.++.|. .++
T Consensus 359 ls~f~sn~a~~~--~l~Pi~~~~a~~~g~~p~---------~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~------g~~ 420 (449)
T 4f35_D 359 LTEFASNTASAA--LLIPVFATVAEAFGMSPV---------LLSVLIAVAASC-AFMLPVATPPNAIVFAS------GHI 420 (449)
T ss_dssp ETEECCHHHHHH--HHHHHHHHHHHHTTCCSH---------HHHHHHHHHHHC-CCSSSSSSHHHHHHCSS------GGG
T ss_pred HHHhccHHHHHH--HHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHH-HhHhhhhhHHHHHHHhc------CCC
Confidence 999999988876 899999999999999985 566666666664 57899999999998752 358
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 303 GWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 303 s~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
++.||+|.|+|.+++++++...+.+.++|
T Consensus 421 ~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 421 KQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988888777776664
No 3
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=71.63 E-value=73 Score=30.54 Aligned_cols=97 Identities=11% Similarity=-0.003 Sum_probs=54.9
Q ss_pred HHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHH--------HHHHHHHHHHhCCCchhHHH------HHHHH
Q 008538 154 ASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLG--------NRIAYQFVKLFGSSSLGLGY------SLVFS 219 (562)
Q Consensus 154 ~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~--------~~la~~l~~~~g~~~~~~~~------~l~~~ 219 (562)
...+.+..++.+.++.+..-.+-=++|.+.++..+..+|.. +.+.+....+...++..... .++.+
T Consensus 98 ~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVcl 177 (285)
T 3kcu_A 98 VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCL 177 (285)
T ss_dssp HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 44667888999988777776777777888877776666542 23333333334333332211 12233
Q ss_pred hhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 220 EALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 220 ~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
...+++-..+......++..|+..= -..|++
T Consensus 178 aVw~~~~ak~~~gKi~~i~~pi~~F--v~~GfE 208 (285)
T 3kcu_A 178 AVWMSYSGRSLMDKAFIMVLPVAMF--VASGFE 208 (285)
T ss_dssp HHHHHTTCCSHHHHHHTTHHHHHHH--HHTTCC
T ss_pred HHHHHHhccchhhHHHHHHHHHHHH--HHcCcc
Confidence 3445555556556554457777643 366765
No 4
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=38.07 E-value=1.3e+02 Score=28.74 Aligned_cols=94 Identities=9% Similarity=0.020 Sum_probs=48.1
Q ss_pred hcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH----HhCCCchhHHH------HHHHHhhh
Q 008538 157 LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGN----RIAYQFVK----LFGSSSLGLGY------SLVFSEAL 222 (562)
Q Consensus 157 ~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~----~la~~l~~----~~g~~~~~~~~------~l~~~~~~ 222 (562)
+.+..++.+.++.+..-.+-=++|.+.++..+..+|... ...+.+.+ +...++..... .++.+...
T Consensus 100 ~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw 179 (280)
T 3kly_A 100 ASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVW 179 (280)
T ss_dssp SSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344556777776666666666777777777766665431 13333333 23233222111 12233344
Q ss_pred hhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 223 LAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 223 ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
++.-..+....+.++..|+..= -..|++
T Consensus 180 ~~~~ak~~~gKi~~i~~pi~~F--v~~GfE 207 (280)
T 3kly_A 180 MTFSARSLTDKVMVLILPVAMF--VSSGFE 207 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH--HHTTCC
T ss_pred HHhhccchhhHHHHHHHHHHHH--HHccch
Confidence 4555555555543456666543 356665
No 5
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=32.11 E-value=3.3e+02 Score=25.65 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHH
Q 008538 130 FLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLG 194 (562)
Q Consensus 130 ~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~ 194 (562)
|-..+++.+...-.....-.+...+-.+.+-.++.+.++.+..-.+-=++|...++..+..+|..
T Consensus 71 F~~Gl~lVvl~g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~ 135 (268)
T 3tds_E 71 FAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLV 135 (268)
T ss_dssp CTHHHHHHHHHTCCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhCccccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 44444444444444444444444455677888999998888777777788888888888888765
No 6
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=12.51 E-value=5.5e+02 Score=25.80 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=31.9
Q ss_pred hhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchh-HHHHHHHhhhcCCCccHHHHHHHH
Q 008538 238 FLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAAN-PLSATLTLNTINQPIGWMDWAKAA 311 (562)
Q Consensus 238 ~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n-~i~~g~l~~~~g~~is~~~~~~~~ 311 (562)
-+|+.+.-+++.|.|++ .. .+.+.+.+.-|. -|+..- .+.+-+..+..|.++++.|+....
T Consensus 281 tLPv~m~~~~~lGv~~~------i~-~fvlPlGatinm------dGtaiy~~~~aifiaq~~Gi~l~~~~~l~ii 342 (422)
T 2nwl_A 281 TLPVTMRVAKEMGISEG------IY-SFTLPLGATINM------DGTALYQGVCTFFIANALGSHLTVGQQLTIV 342 (422)
T ss_dssp HHHHHHHHHHTTTCCHH------HH-HHHHHHHTTSCC------HHHHHHHHHHHHHHHHHHTCCCCSSCCHHHH
T ss_pred HHHHHHHHHHHcCcCcc------ee-eEEeechhhhCC------CchHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 47999998888888753 11 121222222222 222111 122334445558888888876444
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=8.70 E-value=5.2e+02 Score=17.83 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH--HcCCCCC
Q 008538 316 LVSLIVVPLLLYI--IYPPTVK 335 (562)
Q Consensus 316 li~~~~~~~~~~~--~~~~~~~ 335 (562)
++.+.+.....|+ +||++.+
T Consensus 20 LLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 20 LLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHcCcccCCCc
Confidence 3333333333443 4665543
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.90 E-value=1.6e+03 Score=22.87 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=11.5
Q ss_pred hcCCCCCchHHHHHHHHHHHH
Q 008538 374 FGGRLNVDPVTAAILGLSILL 394 (562)
Q Consensus 374 ~~~~~~i~~~~vali~~~ll~ 394 (562)
++...|++.....++.+++..
T Consensus 125 ~~~~~Gi~~~~~i~i~~~i~~ 145 (530)
T 3dh4_A 125 LETILGIPLMYSILGLALFAL 145 (530)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHH
Confidence 344567887655444444433
No 9
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=6.70 E-value=1.4e+03 Score=21.09 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCH
Q 008538 129 IFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGL 193 (562)
Q Consensus 129 i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl 193 (562)
.|-..+++.+...-.....-.+....-.+.+-.++.+.++.+....+-=++|...++..+..+|.
T Consensus 64 ~F~vGl~lVvl~g~eLfTgn~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~ 128 (261)
T 4fc4_A 64 TFGIALTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGG 128 (261)
T ss_dssp HTTHHHHHHHHTCCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcccccchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34445555555555555444444445566788899998887777777777888888877777654
No 10
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=5.42 E-value=5e+02 Score=28.28 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHH
Q 008538 356 TNEKIMAGTLLLTV 369 (562)
Q Consensus 356 ~~e~~~l~i~~~~i 369 (562)
+||.+.+.++.+.+
T Consensus 60 ~rqyk~i~~~~vv~ 73 (735)
T 4av3_A 60 AHETKAIFKVAIVI 73 (735)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56777665554443
Done!