Query 008538
Match_columns 562
No_of_seqs 370 out of 2447
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 05:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 6.8 2.6E+02 0.019 16.6 3.6 23 529-551 15-37 (42)
2 d1qled_ f.23.8.1 (D:) Bacteria 5.5 2.8E+02 0.021 16.6 3.1 23 529-551 16-38 (43)
3 d1rutx4 g.39.1.3 (X:114-146) L 5.0 1E+02 0.0075 17.1 0.7 11 29-39 10-20 (33)
4 d1wfya_ d.15.1.5 (A:) Regulato 4.8 1.1E+02 0.0081 22.4 1.0 15 9-28 2-16 (104)
5 d1rc2a_ f.19.1.1 (A:) Aquapori 4.3 3.7E+02 0.027 21.9 4.6 23 142-169 62-84 (231)
6 d2gycf2 d.100.1.1 (F:1-58) Rib 3.6 1.5E+02 0.011 19.2 0.7 24 35-60 10-33 (58)
7 d1k8kd1 d.198.2.1 (D:1-120) AR 3.3 1.6E+02 0.011 22.2 0.7 13 30-42 39-51 (120)
8 d1y5ic1 f.21.3.1 (C:1-225) Res 3.1 7.4E+02 0.054 19.8 5.4 12 304-315 3-14 (225)
9 d2oara1 f.16.1.1 (A:10-118) Ga 2.8 5.9E+02 0.043 18.3 3.8 9 302-310 58-66 (109)
10 d2hbaa1 d.100.1.1 (A:1-52) Rib 2.6 1.5E+02 0.011 18.8 -0.2 25 34-60 9-33 (52)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.77 E-value=2.6e+02 Score=16.59 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=16.0
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHH
Q 008538 529 PLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 529 ~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
++..|+|+.....++.+++++.+
T Consensus 15 TF~gFik~~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 15 TFAGFVRMVTWAAVVIVAALIFL 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888887777766665544
No 2
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=5.47 E-value=2.8e+02 Score=16.55 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=15.9
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHH
Q 008538 529 PLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 529 ~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
++..|+|+.....++.+++++.+
T Consensus 16 TF~gFi~~~t~~~i~~i~~lifl 38 (43)
T d1qled_ 16 TFAGFIKGATWVSILSIAVLVFL 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888887777766665444
No 3
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.01 E-value=1e+02 Score=17.09 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.3
Q ss_pred CCCceeeecCC
Q 008538 29 STSTRLHSSNS 39 (562)
Q Consensus 29 ~~~~~~~~~~~ 39 (562)
..|+|||..|.
T Consensus 10 VPGDRFHyvNG 20 (33)
T d1rutx4 10 VPGDRFHYING 20 (33)
T ss_dssp CTTCEEEEETT
T ss_pred cCCceeEEecC
Confidence 35899997764
No 4
>d1wfya_ d.15.1.5 (A:) Regulator of G-protein signaling 14, RGS14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.84 E-value=1.1e+02 Score=22.43 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=10.1
Q ss_pred cccccccccccccccccccC
Q 008538 9 SSCSLGLHSLTSRSLKLTPR 28 (562)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (562)
+|||++ ++|..+++|
T Consensus 2 ~s~~~a-----~qeV~lE~R 16 (104)
T d1wfya_ 2 SSGSSG-----DQEVRLENR 16 (104)
T ss_dssp CCCCCC-----CCCCCCCSC
T ss_pred CccccC-----ccEEEEeee
Confidence 578765 566666666
No 5
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=3.7e+02 Score=21.93 Aligned_cols=23 Identities=0% Similarity=-0.208 Sum_probs=13.0
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHhh
Q 008538 142 LPLGAVALLGLGASVLTKTLTFSAAFSA 169 (562)
Q Consensus 142 i~~~~~all~~~~l~~~g~~~~~~v~~~ 169 (562)
+|+.++ +.+.+.|..+++++.-.
T Consensus 62 ~NPAVT-----la~~~~g~~~~~~~~~Y 84 (231)
T d1rc2a_ 62 FNPAVT-----IGLWAGGRFPAKEVVGY 84 (231)
T ss_dssp CSHHHH-----HHHHHTTCSCTTTHHHH
T ss_pred CCCchh-----HHHHhcCCCcHHHHHHH
Confidence 566543 23345677777776543
No 6
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=1.5e+02 Score=19.19 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=16.4
Q ss_pred eecCCCCcchhhhccccccccccccC
Q 008538 35 HSSNSNSNSLTQTNNLTFRNQYFLTN 60 (562)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (562)
...|..++.+ .+.+.|.+||++.+
T Consensus 10 ~~lG~~Gdvv--~Vk~GyaRNyLiP~ 33 (58)
T d2gycf2 10 ANLGSLGDQV--NVKAGYARNFLVPQ 33 (58)
T ss_dssp SSCCCSCEEE--ECCTTTTTTTTTTT
T ss_pred ccCCCCCCEE--EEccchhHHHhccC
Confidence 3344555544 67889999998865
No 7
>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.25 E-value=1.6e+02 Score=22.21 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=9.7
Q ss_pred CCceeeecCCCCc
Q 008538 30 TSTRLHSSNSNSN 42 (562)
Q Consensus 30 ~~~~~~~~~~~~~ 42 (562)
.|++||++|+.++
T Consensus 39 Dgv~yHIs~~~~d 51 (120)
T d1k8kd1 39 DGVLYHISNPNGD 51 (120)
T ss_dssp TTEEEEEECGGGC
T ss_pred CCcEEEeeCCCCC
Confidence 4789999985543
No 8
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=7.4e+02 Score=19.84 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHhHHH
Q 008538 304 WMDWAKAAIVPG 315 (562)
Q Consensus 304 ~~~~~~~~~~~~ 315 (562)
+.+.+..+..+-
T Consensus 3 ~~~~~lf~i~py 14 (225)
T d1y5ic1 3 FLNMFFFDIYPY 14 (225)
T ss_dssp HHHHHHHHTHHH
T ss_pred hHHHHHHHHHHH
Confidence 445555655443
No 9
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.84 E-value=5.9e+02 Score=18.27 Aligned_cols=9 Identities=22% Similarity=-0.038 Sum_probs=4.5
Q ss_pred ccHHHHHHH
Q 008538 302 IGWMDWAKA 310 (562)
Q Consensus 302 is~~~~~~~ 310 (562)
+.|+.|+-.
T Consensus 58 i~~G~fi~a 66 (109)
T d2oara1 58 IDLNVLLSA 66 (109)
T ss_dssp ECHHHHHHH
T ss_pred eeHHHHHHH
Confidence 555555443
No 10
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.57 E-value=1.5e+02 Score=18.76 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=16.6
Q ss_pred eeecCCCCcchhhhccccccccccccC
Q 008538 34 LHSSNSNSNSLTQTNNLTFRNQYFLTN 60 (562)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (562)
.+..|..++.+ .+...|.+||++.+
T Consensus 9 v~~lG~~GdiV--~Vk~GyarN~LiP~ 33 (52)
T d2hbaa1 9 VKGMGKKGEIK--NVADGYANNFLFKQ 33 (52)
T ss_dssp BTTTBCTTCEE--ECCHHHHHHTTTTT
T ss_pred ccccCCCCCEE--EEcccchhHhhccC
Confidence 33445555554 57788999998865
Done!