Query 008540
Match_columns 562
No_of_seqs 544 out of 4329
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 13:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 4.5E-65 9.8E-70 495.0 40.5 354 161-551 1-360 (397)
2 KOG0543 FKBP-type peptidyl-pro 100.0 4.8E-37 1E-41 299.3 20.4 349 45-513 1-357 (397)
3 KOG0545 Aryl-hydrocarbon recep 100.0 3.3E-36 7.1E-41 271.6 18.3 277 268-546 8-329 (329)
4 KOG0549 FKBP-type peptidyl-pro 100.0 4.8E-29 1E-33 215.9 15.4 169 85-262 1-177 (188)
5 KOG0549 FKBP-type peptidyl-pro 100.0 3.1E-28 6.8E-33 210.9 16.4 176 197-386 1-180 (188)
6 KOG0544 FKBP-type peptidyl-pro 99.9 4.6E-27 9.9E-32 178.5 11.6 106 38-143 2-107 (108)
7 COG0545 FkpA FKBP-type peptidy 99.9 9.1E-27 2E-31 206.9 12.7 108 33-143 97-204 (205)
8 KOG0544 FKBP-type peptidyl-pro 99.9 1.9E-24 4.1E-29 164.3 11.0 105 272-381 3-107 (108)
9 PRK11570 peptidyl-prolyl cis-t 99.9 2.4E-22 5.2E-27 186.2 14.5 108 33-143 98-205 (206)
10 KOG0552 FKBP-type peptidyl-pro 99.9 3.8E-22 8.2E-27 182.5 12.4 108 33-143 116-225 (226)
11 TIGR03516 ppisom_GldI peptidyl 99.9 2E-21 4.3E-26 175.6 14.4 110 33-144 65-176 (177)
12 COG0545 FkpA FKBP-type peptidy 99.8 5.3E-21 1.1E-25 170.3 11.7 103 150-260 98-204 (205)
13 KOG0553 TPR repeat-containing 99.8 9E-21 1.9E-25 178.5 12.4 125 394-533 76-200 (304)
14 PRK10902 FKBP-type peptidyl-pr 99.8 9.1E-20 2E-24 175.1 14.8 110 33-146 142-251 (269)
15 KOG4234 TPR repeat-containing 99.8 1.5E-19 3.2E-24 159.3 14.6 133 395-537 91-223 (271)
16 PF00254 FKBP_C: FKBP-type pep 99.8 5.5E-19 1.2E-23 144.7 12.0 93 49-141 1-94 (94)
17 PRK15095 FKBP-type peptidyl-pr 99.8 1.5E-18 3.1E-23 154.0 10.0 132 52-192 4-138 (156)
18 KOG0552 FKBP-type peptidyl-pro 99.8 7E-18 1.5E-22 154.6 11.9 105 149-260 116-225 (226)
19 COG1047 SlpA FKBP-type peptidy 99.8 2.6E-18 5.6E-23 150.6 8.6 136 52-198 2-141 (174)
20 TIGR03516 ppisom_GldI peptidyl 99.7 2.8E-17 6.1E-22 148.7 12.1 105 151-261 67-176 (177)
21 PRK10737 FKBP-type peptidyl-pr 99.7 5.2E-17 1.1E-21 147.6 11.0 124 52-192 2-134 (196)
22 PRK11570 peptidyl-prolyl cis-t 99.7 8.1E-17 1.8E-21 149.4 12.3 103 150-260 99-205 (206)
23 KOG0547 Translocase of outer m 99.7 1.2E-15 2.6E-20 151.4 14.3 131 388-533 104-235 (606)
24 KOG0548 Molecular co-chaperone 99.7 5.6E-16 1.2E-20 156.0 12.0 117 398-529 357-473 (539)
25 PF00254 FKBP_C: FKBP-type pep 99.7 1.4E-15 3.1E-20 124.4 12.1 94 282-379 1-94 (94)
26 KOG4648 Uncharacterized conser 99.6 5.1E-16 1.1E-20 147.5 10.3 121 392-527 90-210 (536)
27 PRK10902 FKBP-type peptidyl-pr 99.6 9.3E-15 2E-19 140.7 12.6 104 150-262 143-250 (269)
28 KOG0550 Molecular chaperone (D 99.6 1.2E-14 2.5E-19 141.9 10.9 128 395-534 245-372 (486)
29 KOG0551 Hsp90 co-chaperone CNS 99.6 2E-14 4.4E-19 136.6 11.8 109 397-516 79-187 (390)
30 PLN03088 SGT1, suppressor of 99.5 6.9E-14 1.5E-18 142.8 14.1 118 400-532 3-120 (356)
31 PRK15359 type III secretion sy 99.5 2.7E-13 5.9E-18 120.1 13.3 114 402-530 27-140 (144)
32 KOG0548 Molecular co-chaperone 99.5 1.3E-13 2.9E-18 139.0 11.4 113 399-526 2-114 (539)
33 TIGR00990 3a0801s09 mitochondr 99.5 5.8E-13 1.3E-17 147.0 17.4 134 366-516 95-228 (615)
34 COG1047 SlpA FKBP-type peptidy 99.4 3.6E-13 7.7E-18 118.5 9.2 122 169-307 3-133 (174)
35 PRK15095 FKBP-type peptidyl-pr 99.4 3.3E-13 7.1E-18 119.9 8.7 124 168-305 4-134 (156)
36 KOG4642 Chaperone-dependent E3 99.4 8.1E-13 1.8E-17 120.3 8.4 117 397-528 8-129 (284)
37 PRK15363 pathogenicity island 99.4 6.9E-12 1.5E-16 109.4 13.8 102 399-515 35-136 (157)
38 TIGR02552 LcrH_SycD type III s 99.4 1.1E-11 2.3E-16 108.8 13.4 116 399-529 17-132 (135)
39 KOG0376 Serine-threonine phosp 99.4 1.6E-12 3.4E-17 130.5 8.4 122 398-534 3-124 (476)
40 PRK10737 FKBP-type peptidyl-pr 99.3 2.9E-12 6.3E-17 116.7 9.0 123 169-305 3-130 (196)
41 KOG0546 HSP90 co-chaperone CPR 99.3 2.8E-12 6E-17 123.7 7.4 155 391-545 214-372 (372)
42 KOG4626 O-linked N-acetylgluco 99.3 1.7E-11 3.7E-16 125.2 10.2 134 396-545 249-382 (966)
43 PRK11189 lipoprotein NlpI; Pro 99.2 1.5E-10 3.2E-15 115.7 14.5 105 397-516 62-166 (296)
44 PRK10370 formate-dependent nit 99.2 2.6E-10 5.6E-15 106.6 13.3 111 398-523 72-185 (198)
45 PF13414 TPR_11: TPR repeat; P 99.2 5.4E-11 1.2E-15 91.1 7.2 65 449-513 4-69 (69)
46 KOG4626 O-linked N-acetylgluco 99.2 7.4E-11 1.6E-15 120.6 9.9 114 399-527 354-467 (966)
47 TIGR00990 3a0801s09 mitochondr 99.1 5.3E-10 1.2E-14 123.6 14.4 147 398-545 330-495 (615)
48 KOG0624 dsRNA-activated protei 99.1 2.9E-10 6.3E-15 108.9 10.0 117 397-528 36-155 (504)
49 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.4E-09 3.1E-14 92.6 13.3 112 400-523 3-117 (119)
50 KOG1126 DNA-binding cell divis 99.1 1.8E-10 3.9E-15 119.4 8.4 137 399-535 421-576 (638)
51 KOG4555 TPR repeat-containing 99.1 6E-09 1.3E-13 86.3 15.1 134 393-547 37-174 (175)
52 COG3063 PilF Tfp pilus assembl 99.1 1.5E-09 3.3E-14 99.1 12.7 149 394-544 30-199 (250)
53 PRK02603 photosystem I assembl 99.0 5E-09 1.1E-13 96.0 14.5 110 394-515 30-153 (172)
54 PF13432 TPR_16: Tetratricopep 99.0 9.3E-10 2E-14 83.1 7.6 64 453-516 2-65 (65)
55 KOG0624 dsRNA-activated protei 99.0 8.8E-10 1.9E-14 105.6 8.4 126 394-530 264-389 (504)
56 PRK09782 bacteriophage N4 rece 99.0 4.1E-09 8.9E-14 119.9 15.3 120 400-534 610-729 (987)
57 KOG0547 Translocase of outer m 99.0 1.5E-09 3.3E-14 108.5 10.3 118 396-530 323-440 (606)
58 PRK15331 chaperone protein Sic 99.0 3.8E-09 8.3E-14 92.7 11.5 104 399-518 37-140 (165)
59 KOG1155 Anaphase-promoting com 99.0 6.9E-09 1.5E-13 103.4 14.6 131 399-545 364-494 (559)
60 KOG1155 Anaphase-promoting com 99.0 2.6E-09 5.6E-14 106.3 11.5 125 404-544 335-459 (559)
61 PRK15359 type III secretion sy 99.0 3.6E-09 7.9E-14 93.7 11.3 106 419-543 13-118 (144)
62 PRK10370 formate-dependent nit 99.0 6.5E-09 1.4E-13 97.2 12.6 123 412-550 52-177 (198)
63 cd00189 TPR Tetratricopeptide 99.0 3.3E-09 7.1E-14 85.2 9.2 99 401-514 2-100 (100)
64 PF12895 Apc3: Anaphase-promot 99.0 1.9E-09 4.1E-14 86.0 7.6 83 412-508 2-84 (84)
65 KOG1173 Anaphase-promoting com 98.9 1.2E-08 2.7E-13 104.0 14.3 125 404-528 385-535 (611)
66 PRK15179 Vi polysaccharide bio 98.9 8E-09 1.7E-13 113.3 13.6 133 398-546 85-217 (694)
67 COG0544 Tig FKBP-type peptidyl 98.9 1.2E-09 2.6E-14 112.9 6.2 140 11-160 115-257 (441)
68 COG5010 TadD Flp pilus assembl 98.9 1.3E-08 2.8E-13 95.1 12.4 121 401-536 102-222 (257)
69 KOG1308 Hsp70-interacting prot 98.9 1.1E-09 2.4E-14 105.4 5.3 110 390-514 105-214 (377)
70 TIGR03302 OM_YfiO outer membra 98.9 3E-08 6.5E-13 95.7 15.3 113 398-522 32-155 (235)
71 PRK12370 invasion protein regu 98.9 1.3E-08 2.8E-13 110.9 13.8 117 402-533 341-458 (553)
72 TIGR00115 tig trigger factor. 98.9 4.4E-09 9.5E-14 110.0 9.7 101 51-159 145-245 (408)
73 CHL00033 ycf3 photosystem I as 98.9 4.1E-08 8.9E-13 89.5 14.9 110 395-516 31-154 (168)
74 PRK12370 invasion protein regu 98.9 1.5E-08 3.2E-13 110.3 13.1 96 412-522 317-412 (553)
75 PF13414 TPR_11: TPR repeat; P 98.9 2.7E-09 5.9E-14 81.6 5.1 66 399-479 3-69 (69)
76 TIGR02521 type_IV_pilW type IV 98.9 3.8E-08 8.3E-13 93.7 14.0 134 401-534 67-221 (234)
77 KOG0553 TPR repeat-containing 98.9 1.6E-08 3.6E-13 96.2 10.7 91 453-544 86-176 (304)
78 TIGR02521 type_IV_pilW type IV 98.9 5.1E-08 1.1E-12 92.8 14.5 145 398-543 30-195 (234)
79 PRK09782 bacteriophage N4 rece 98.9 2.5E-08 5.4E-13 113.6 14.2 97 449-546 610-706 (987)
80 KOG1126 DNA-binding cell divis 98.9 5.5E-09 1.2E-13 108.6 8.0 127 396-537 486-612 (638)
81 PRK11189 lipoprotein NlpI; Pro 98.8 3.6E-08 7.8E-13 98.5 13.6 112 413-535 40-151 (296)
82 PF13371 TPR_9: Tetratricopept 98.8 1.6E-08 3.4E-13 78.3 8.4 70 455-524 2-71 (73)
83 PRK01490 tig trigger factor; P 98.8 1.1E-08 2.3E-13 108.0 9.7 100 52-159 157-256 (435)
84 KOG1125 TPR repeat-containing 98.8 6.1E-09 1.3E-13 106.6 6.4 98 402-514 433-530 (579)
85 PF13429 TPR_15: Tetratricopep 98.8 1.4E-08 3.1E-13 100.8 9.0 133 399-547 146-278 (280)
86 TIGR02552 LcrH_SycD type III s 98.8 2.4E-08 5.3E-13 87.3 9.4 110 421-546 5-114 (135)
87 PRK10803 tol-pal system protei 98.8 1.4E-07 3.1E-12 91.7 15.1 112 402-525 145-260 (263)
88 PRK15174 Vi polysaccharide exp 98.8 4.5E-08 9.7E-13 108.5 12.9 115 405-534 218-336 (656)
89 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4E-13 76.6 6.6 67 459-525 2-68 (68)
90 PRK10866 outer membrane biogen 98.7 5.1E-07 1.1E-11 87.1 17.4 131 400-542 33-187 (243)
91 PRK15174 Vi polysaccharide exp 98.7 8.9E-08 1.9E-12 106.2 13.5 117 400-531 247-367 (656)
92 PF13525 YfiO: Outer membrane 98.7 3.6E-07 7.8E-12 86.0 15.4 131 399-541 5-152 (203)
93 PRK11447 cellulose synthase su 98.7 3.4E-07 7.3E-12 108.4 18.1 128 399-527 303-430 (1157)
94 COG3063 PilF Tfp pilus assembl 98.7 2.2E-07 4.9E-12 85.2 12.7 134 397-545 101-234 (250)
95 PLN02789 farnesyltranstransfer 98.7 2.9E-07 6.3E-12 92.2 14.4 115 399-528 71-188 (320)
96 KOG0550 Molecular chaperone (D 98.7 1.3E-07 2.9E-12 93.2 11.4 144 398-545 202-349 (486)
97 PRK15363 pathogenicity island 98.7 1.7E-07 3.7E-12 82.0 10.8 94 451-545 38-131 (157)
98 PF13512 TPR_18: Tetratricopep 98.7 4.3E-07 9.4E-12 78.1 12.9 107 400-518 11-135 (142)
99 TIGR03302 OM_YfiO outer membra 98.7 4.7E-07 1E-11 87.3 14.6 125 400-536 71-223 (235)
100 KOG2076 RNA polymerase III tra 98.6 7E-07 1.5E-11 96.0 15.9 116 398-513 138-272 (895)
101 PRK10049 pgaA outer membrane p 98.6 3.1E-07 6.8E-12 103.9 13.9 112 400-527 50-161 (765)
102 TIGR02917 PEP_TPR_lipo putativ 98.6 4.7E-07 1E-11 104.2 15.4 122 397-533 123-244 (899)
103 PRK11447 cellulose synthase su 98.6 4.9E-07 1.1E-11 107.0 15.7 127 400-526 386-539 (1157)
104 PRK11788 tetratricopeptide rep 98.6 6E-07 1.3E-11 93.5 14.7 121 402-523 183-323 (389)
105 PRK15179 Vi polysaccharide bio 98.6 4.2E-07 9.1E-12 99.9 13.8 106 395-515 116-221 (694)
106 TIGR02917 PEP_TPR_lipo putativ 98.6 3.9E-07 8.5E-12 104.9 13.9 91 451-543 807-897 (899)
107 cd00189 TPR Tetratricopeptide 98.6 7.5E-07 1.6E-11 71.1 11.5 86 450-535 2-87 (100)
108 KOG2003 TPR repeat-containing 98.6 9.2E-08 2E-12 94.9 6.9 121 399-534 490-610 (840)
109 COG1729 Uncharacterized protei 98.6 1.2E-06 2.5E-11 83.3 13.8 113 401-525 143-258 (262)
110 PLN02789 farnesyltranstransfer 98.6 7.1E-07 1.5E-11 89.4 12.8 121 409-545 47-170 (320)
111 PRK11788 tetratricopeptide rep 98.6 6.6E-07 1.4E-11 93.2 13.1 145 400-545 108-277 (389)
112 PLN03088 SGT1, suppressor of 98.5 6E-07 1.3E-11 91.9 12.2 86 451-536 5-90 (356)
113 COG4785 NlpI Lipoprotein NlpI, 98.5 3.1E-07 6.7E-12 83.2 8.4 112 387-516 56-167 (297)
114 KOG1840 Kinesin light chain [C 98.5 1.6E-06 3.4E-11 91.1 14.5 148 396-551 238-401 (508)
115 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.2E-07 6.9E-12 93.1 8.9 63 449-511 76-141 (453)
116 PF13432 TPR_16: Tetratricopep 98.5 1.3E-07 2.8E-12 71.2 4.5 64 404-482 2-65 (65)
117 PF13424 TPR_12: Tetratricopep 98.5 3E-07 6.5E-12 72.0 6.1 66 446-511 3-75 (78)
118 COG4235 Cytochrome c biogenesi 98.5 1.2E-06 2.7E-11 84.1 11.4 115 397-526 154-271 (287)
119 CHL00033 ycf3 photosystem I as 98.5 1.3E-06 2.9E-11 79.5 11.1 109 406-527 6-117 (168)
120 KOG2002 TPR-containing nuclear 98.5 2.4E-06 5.1E-11 92.7 14.4 119 400-530 271-390 (1018)
121 PRK10049 pgaA outer membrane p 98.5 1.6E-06 3.4E-11 98.3 13.8 109 400-523 360-468 (765)
122 KOG1310 WD40 repeat protein [G 98.5 3.4E-07 7.4E-12 92.6 7.3 114 393-521 368-484 (758)
123 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.2E-06 4.8E-11 72.7 11.4 97 450-547 4-106 (119)
124 COG5010 TadD Flp pilus assembl 98.4 1.6E-06 3.6E-11 81.2 10.6 87 453-539 105-191 (257)
125 PF06552 TOM20_plant: Plant sp 98.4 1.9E-06 4E-11 76.6 10.1 97 415-526 7-124 (186)
126 KOG4162 Predicted calmodulin-b 98.4 1.3E-06 2.8E-11 92.6 10.2 113 406-533 657-771 (799)
127 PRK14574 hmsH outer membrane p 98.4 3.2E-06 6.9E-11 94.8 13.9 147 399-547 34-199 (822)
128 KOG2002 TPR-containing nuclear 98.4 3.4E-06 7.3E-11 91.6 13.4 145 400-550 453-597 (1018)
129 PRK02603 photosystem I assembl 98.4 2.9E-06 6.3E-11 77.6 11.2 84 447-530 34-120 (172)
130 PF14559 TPR_19: Tetratricopep 98.4 4.6E-07 1E-11 68.8 4.8 67 409-490 1-67 (68)
131 PF13424 TPR_12: Tetratricopep 98.4 2.2E-06 4.7E-11 67.1 8.6 73 397-477 3-75 (78)
132 COG4783 Putative Zn-dependent 98.3 6.8E-06 1.5E-10 83.3 13.5 124 400-538 307-430 (484)
133 PF09976 TPR_21: Tetratricopep 98.3 5.4E-06 1.2E-10 73.5 11.5 57 451-508 88-144 (145)
134 PF13371 TPR_9: Tetratricopept 98.3 2.3E-06 4.9E-11 66.0 7.8 70 406-490 2-71 (73)
135 KOG1128 Uncharacterized conser 98.3 1.4E-06 3.1E-11 91.8 8.6 129 401-545 487-615 (777)
136 KOG1129 TPR repeat-containing 98.3 1.1E-06 2.3E-11 84.3 7.0 133 402-534 293-447 (478)
137 KOG1125 TPR repeat-containing 98.3 7.2E-06 1.6E-10 84.6 12.2 89 449-537 431-519 (579)
138 PF14938 SNAP: Soluble NSF att 98.3 4.4E-06 9.5E-11 82.9 10.4 145 397-551 112-264 (282)
139 KOG1840 Kinesin light chain [C 98.3 1.5E-05 3.3E-10 83.8 14.6 132 396-534 280-427 (508)
140 PRK14720 transcript cleavage f 98.2 1.3E-05 2.8E-10 89.2 13.9 131 399-547 31-179 (906)
141 COG4783 Putative Zn-dependent 98.2 2.5E-05 5.4E-10 79.3 14.4 113 402-529 343-455 (484)
142 PF12895 Apc3: Anaphase-promot 98.2 2.2E-06 4.9E-11 68.1 5.7 76 461-537 2-79 (84)
143 PF12688 TPR_5: Tetratrico pep 98.2 1.9E-05 4.1E-10 66.9 11.5 98 401-510 3-103 (120)
144 COG2956 Predicted N-acetylgluc 98.2 2.9E-05 6.3E-10 74.8 13.6 148 387-537 98-270 (389)
145 KOG3060 Uncharacterized conser 98.2 6.4E-05 1.4E-09 70.1 15.0 124 402-525 89-234 (289)
146 TIGR00115 tig trigger factor. 98.2 1E-05 2.2E-10 84.7 10.6 84 168-262 146-231 (408)
147 cd05804 StaR_like StaR_like; a 98.2 3.8E-05 8.2E-10 78.9 14.6 142 401-543 45-212 (355)
148 TIGR00540 hemY_coli hemY prote 98.1 2.9E-05 6.2E-10 81.5 13.4 139 398-551 262-404 (409)
149 PRK10153 DNA-binding transcrip 98.1 5.4E-05 1.2E-09 81.0 15.4 118 399-517 339-488 (517)
150 PF03704 BTAD: Bacterial trans 98.1 9.4E-05 2E-09 65.5 14.6 111 400-510 7-124 (146)
151 PF13429 TPR_15: Tetratricopep 98.1 8.5E-06 1.8E-10 80.9 8.5 132 400-545 111-242 (280)
152 KOG2076 RNA polymerase III tra 98.1 4.5E-05 9.7E-10 82.5 14.1 132 400-548 208-344 (895)
153 PF00515 TPR_1: Tetratricopept 98.1 5.1E-06 1.1E-10 53.4 4.4 34 482-515 1-34 (34)
154 TIGR00540 hemY_coli hemY prote 98.1 8.7E-05 1.9E-09 77.9 15.8 124 395-533 80-204 (409)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2.9E-05 6.3E-10 79.2 11.2 73 394-478 70-142 (453)
156 PRK14574 hmsH outer membrane p 98.1 4E-05 8.6E-10 86.1 13.3 113 406-534 109-221 (822)
157 KOG4151 Myosin assembly protei 98.1 1.4E-05 3E-10 85.6 8.9 124 391-525 45-170 (748)
158 PRK10747 putative protoheme IX 98.0 0.00011 2.3E-09 76.9 15.5 126 394-534 79-205 (398)
159 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.2E-09 62.9 15.5 133 395-541 7-142 (145)
160 PRK10803 tol-pal system protei 98.0 5.3E-05 1.1E-09 73.8 11.8 98 449-547 143-247 (263)
161 KOG1156 N-terminal acetyltrans 98.0 4.3E-05 9.4E-10 79.8 11.6 118 401-533 9-126 (700)
162 cd05804 StaR_like StaR_like; a 98.0 3.7E-05 8E-10 79.0 11.2 99 400-513 115-217 (355)
163 PRK01490 tig trigger factor; P 98.0 3E-05 6.5E-10 81.9 10.6 84 168-262 157-242 (435)
164 KOG4162 Predicted calmodulin-b 98.0 7.3E-05 1.6E-09 79.7 12.6 103 399-516 684-788 (799)
165 KOG1129 TPR repeat-containing 98.0 4.3E-05 9.3E-10 73.6 9.9 99 403-517 227-325 (478)
166 PF13431 TPR_17: Tetratricopep 98.0 8.1E-06 1.8E-10 52.4 3.3 34 470-503 1-34 (34)
167 PF07719 TPR_2: Tetratricopept 98.0 1.9E-05 4.1E-10 50.6 5.0 34 482-515 1-34 (34)
168 COG2956 Predicted N-acetylgluc 97.9 0.00029 6.3E-09 68.1 14.8 111 395-520 176-287 (389)
169 KOG1128 Uncharacterized conser 97.9 8.4E-05 1.8E-09 78.8 12.1 138 397-535 422-572 (777)
170 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 6.3E-05 1.4E-09 53.3 7.5 48 483-530 2-49 (53)
171 PF13428 TPR_14: Tetratricopep 97.9 2.5E-05 5.3E-10 53.5 5.4 42 483-524 2-43 (44)
172 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 4.3E-05 9.4E-10 78.3 9.4 92 405-511 206-297 (395)
173 COG4105 ComL DNA uptake lipopr 97.9 0.00078 1.7E-08 63.7 16.7 131 399-541 34-178 (254)
174 KOG4648 Uncharacterized conser 97.9 2.6E-05 5.7E-10 75.4 6.8 63 453-515 102-164 (536)
175 PRK10747 putative protoheme IX 97.9 0.00021 4.5E-09 74.7 14.0 129 398-546 262-390 (398)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.00023 4.9E-09 60.3 11.6 85 450-534 3-93 (120)
177 PRK11906 transcriptional regul 97.9 0.00011 2.5E-09 75.0 11.1 101 414-529 273-385 (458)
178 KOG1130 Predicted G-alpha GTPa 97.9 2.9E-05 6.3E-10 76.8 6.6 111 393-512 189-305 (639)
179 KOG1173 Anaphase-promoting com 97.9 9.7E-05 2.1E-09 76.2 10.6 133 399-547 312-444 (611)
180 COG4235 Cytochrome c biogenesi 97.9 0.00035 7.7E-09 67.4 13.9 120 415-550 138-260 (287)
181 PF15015 NYD-SP12_N: Spermatog 97.8 0.00021 4.5E-09 71.1 11.5 112 399-510 176-290 (569)
182 KOG1174 Anaphase-promoting com 97.8 0.00025 5.3E-09 70.6 12.0 132 399-530 232-382 (564)
183 KOG4234 TPR repeat-containing 97.8 0.0004 8.7E-09 62.6 12.1 93 454-547 101-198 (271)
184 KOG4642 Chaperone-dependent E3 97.8 4.5E-05 9.8E-10 70.4 6.1 82 453-534 15-96 (284)
185 PF00515 TPR_1: Tetratricopept 97.8 2.9E-05 6.3E-10 49.8 3.6 33 449-481 2-34 (34)
186 PF14938 SNAP: Soluble NSF att 97.7 0.00025 5.4E-09 70.4 10.9 107 396-512 72-185 (282)
187 PF12569 NARP1: NMDA receptor- 97.7 0.00026 5.7E-09 75.4 11.1 87 446-532 192-278 (517)
188 PF12968 DUF3856: Domain of Un 97.7 0.0011 2.3E-08 54.6 11.9 107 402-511 12-129 (144)
189 COG0544 Tig FKBP-type peptidyl 97.7 0.00014 3E-09 75.7 8.6 81 169-262 158-242 (441)
190 KOG1127 TPR repeat-containing 97.7 0.00021 4.6E-09 78.1 10.0 137 399-535 492-649 (1238)
191 PF13428 TPR_14: Tetratricopep 97.7 8.2E-05 1.8E-09 50.9 4.6 42 450-491 3-44 (44)
192 KOG0545 Aryl-hydrocarbon recep 97.7 2.1E-05 4.5E-10 72.8 1.9 79 35-114 8-90 (329)
193 PF04733 Coatomer_E: Coatomer 97.6 0.00017 3.6E-09 71.5 8.5 110 406-532 138-251 (290)
194 COG4700 Uncharacterized protei 97.6 0.00085 1.8E-08 59.9 11.6 115 400-530 90-207 (251)
195 COG1729 Uncharacterized protei 97.6 0.00052 1.1E-08 65.5 11.0 96 451-547 144-245 (262)
196 PF13525 YfiO: Outer membrane 97.6 0.0024 5.3E-08 60.0 15.6 114 400-525 43-184 (203)
197 PRK15331 chaperone protein Sic 97.6 0.00037 8.1E-09 61.6 9.1 85 451-535 40-124 (165)
198 KOG3060 Uncharacterized conser 97.6 0.0019 4.1E-08 60.6 14.0 103 408-525 61-197 (289)
199 KOG1127 TPR repeat-containing 97.6 0.00047 1E-08 75.5 10.9 94 457-550 11-107 (1238)
200 PRK14720 transcript cleavage f 97.5 0.00034 7.5E-09 78.1 9.9 109 400-511 66-178 (906)
201 PRK10941 hypothetical protein; 97.5 0.00093 2E-08 65.0 11.7 77 445-521 178-254 (269)
202 PF13181 TPR_8: Tetratricopept 97.5 0.00015 3.3E-09 46.4 4.2 33 483-515 2-34 (34)
203 KOG1156 N-terminal acetyltrans 97.5 0.0009 1.9E-08 70.3 11.5 120 398-532 40-159 (700)
204 KOG2796 Uncharacterized conser 97.5 0.0031 6.6E-08 59.4 13.6 115 402-516 180-320 (366)
205 PF07719 TPR_2: Tetratricopept 97.5 0.00019 4E-09 45.9 4.2 33 449-481 2-34 (34)
206 PF13512 TPR_18: Tetratricopep 97.5 0.00048 1E-08 59.5 7.8 68 451-518 13-83 (142)
207 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.001 2.2E-08 68.3 11.5 107 412-536 182-288 (395)
208 KOG1586 Protein required for f 97.4 0.004 8.8E-08 57.7 13.8 136 402-547 116-259 (288)
209 KOG4555 TPR repeat-containing 97.4 0.0012 2.7E-08 55.3 9.5 62 454-515 49-110 (175)
210 PRK11906 transcriptional regul 97.4 0.00086 1.9E-08 68.7 10.3 88 414-516 319-406 (458)
211 PRK10866 outer membrane biogen 97.4 0.00068 1.5E-08 65.5 9.2 68 451-518 35-105 (243)
212 PF04733 Coatomer_E: Coatomer 97.4 0.0004 8.6E-09 68.9 7.7 97 408-519 174-273 (290)
213 KOG2003 TPR repeat-containing 97.4 0.0016 3.5E-08 65.5 11.3 137 396-532 555-710 (840)
214 KOG3364 Membrane protein invol 97.3 0.0017 3.7E-08 54.9 9.2 84 447-530 31-119 (149)
215 KOG1174 Anaphase-promoting com 97.3 0.0011 2.3E-08 66.2 9.2 119 399-532 334-454 (564)
216 KOG3785 Uncharacterized conser 97.3 0.00097 2.1E-08 65.1 8.4 105 407-529 30-134 (557)
217 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0008 1.7E-08 47.7 5.8 41 450-490 3-43 (53)
218 KOG4507 Uncharacterized conser 97.3 0.00059 1.3E-08 70.6 7.1 103 410-526 618-720 (886)
219 KOG0495 HAT repeat protein [RN 97.3 0.0026 5.6E-08 67.0 11.6 71 451-521 688-758 (913)
220 KOG1130 Predicted G-alpha GTPa 97.2 0.0018 3.9E-08 64.6 9.8 103 400-511 236-344 (639)
221 PF06552 TOM20_plant: Plant sp 97.2 0.00072 1.6E-08 60.4 6.3 88 463-550 6-106 (186)
222 KOG1941 Acetylcholine receptor 97.2 0.00094 2E-08 65.5 7.6 137 398-534 5-180 (518)
223 KOG3785 Uncharacterized conser 97.2 0.014 3E-07 57.3 15.0 71 452-522 155-225 (557)
224 KOG0495 HAT repeat protein [RN 97.1 0.005 1.1E-07 64.9 12.0 131 401-531 586-734 (913)
225 COG4785 NlpI Lipoprotein NlpI, 97.1 0.0016 3.4E-08 59.7 7.3 73 446-518 63-135 (297)
226 KOG4814 Uncharacterized conser 97.1 0.0054 1.2E-07 64.4 11.5 104 399-511 354-457 (872)
227 PF12569 NARP1: NMDA receptor- 97.0 0.0051 1.1E-07 65.7 11.2 101 450-550 6-110 (517)
228 PF13174 TPR_6: Tetratricopept 97.0 0.0014 2.9E-08 41.4 4.2 33 483-515 1-33 (33)
229 COG3071 HemY Uncharacterized e 96.9 0.024 5.3E-07 56.6 14.2 127 393-534 78-205 (400)
230 KOG4340 Uncharacterized conser 96.9 0.0023 5E-08 61.2 6.8 93 399-506 144-265 (459)
231 KOG1941 Acetylcholine receptor 96.9 0.0063 1.4E-07 59.8 9.5 101 402-511 125-235 (518)
232 PF13181 TPR_8: Tetratricopept 96.8 0.0015 3.3E-08 41.6 3.3 33 449-481 2-34 (34)
233 KOG3081 Vesicle coat complex C 96.8 0.017 3.7E-07 54.8 11.4 131 402-532 111-257 (299)
234 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0071 1.5E-07 58.9 9.1 68 451-518 84-155 (390)
235 PF13176 TPR_7: Tetratricopept 96.7 0.0012 2.7E-08 42.8 2.5 28 484-511 1-28 (36)
236 PF09986 DUF2225: Uncharacteri 96.7 0.054 1.2E-06 51.1 14.4 100 408-515 86-198 (214)
237 KOG1308 Hsp70-interacting prot 96.7 0.00081 1.8E-08 65.6 2.2 63 455-517 121-183 (377)
238 COG4105 ComL DNA uptake lipopr 96.7 0.0085 1.8E-07 56.8 8.5 70 449-518 35-107 (254)
239 smart00028 TPR Tetratricopepti 96.7 0.0028 6.1E-08 38.9 3.9 32 483-514 2-33 (34)
240 KOG0376 Serine-threonine phosp 96.7 0.0021 4.5E-08 65.7 4.8 64 452-515 8-71 (476)
241 PF10300 DUF3808: Protein of u 96.6 0.015 3.3E-07 61.8 11.0 101 400-512 268-377 (468)
242 COG2976 Uncharacterized protei 96.6 0.043 9.3E-07 49.8 11.9 102 401-515 91-192 (207)
243 PF13431 TPR_17: Tetratricopep 96.5 0.001 2.2E-08 42.5 0.8 34 421-469 1-34 (34)
244 KOG2376 Signal recognition par 96.5 0.022 4.8E-07 59.6 10.6 114 400-516 13-144 (652)
245 KOG2396 HAT (Half-A-TPR) repea 96.4 0.039 8.4E-07 56.8 11.9 106 417-537 89-195 (568)
246 COG3118 Thioredoxin domain-con 96.3 0.14 3.1E-06 49.6 14.6 115 401-530 136-286 (304)
247 KOG3824 Huntingtin interacting 96.3 0.014 3.1E-07 56.1 7.7 74 451-524 119-192 (472)
248 COG0457 NrfG FOG: TPR repeat [ 96.2 0.14 3E-06 47.3 14.3 57 458-514 177-234 (291)
249 KOG1586 Protein required for f 96.2 0.068 1.5E-06 49.8 11.3 114 395-518 70-190 (288)
250 PF13176 TPR_7: Tetratricopept 96.2 0.0058 1.3E-07 39.6 3.2 28 450-477 1-28 (36)
251 KOG2053 Mitochondrial inherita 96.1 0.064 1.4E-06 58.9 12.3 115 407-537 17-131 (932)
252 PF14561 TPR_20: Tetratricopep 96.1 0.037 7.9E-07 44.3 8.1 67 467-533 7-75 (90)
253 PF13174 TPR_6: Tetratricopept 96.1 0.0068 1.5E-07 38.1 3.2 32 450-481 2-33 (33)
254 KOG1915 Cell cycle control pro 96.1 0.096 2.1E-06 53.6 12.6 90 411-511 378-500 (677)
255 PF08631 SPO22: Meiosis protei 96.0 0.25 5.5E-06 48.8 15.5 122 389-512 25-151 (278)
256 KOG2471 TPR repeat-containing 96.0 0.023 5E-07 58.1 7.7 79 447-525 282-378 (696)
257 COG0457 NrfG FOG: TPR repeat [ 96.0 0.075 1.6E-06 49.1 11.1 65 450-514 204-268 (291)
258 PRK10153 DNA-binding transcrip 95.9 0.085 1.9E-06 56.7 12.3 94 450-545 378-481 (517)
259 PRK04841 transcriptional regul 95.9 0.15 3.3E-06 59.4 15.6 101 403-512 495-603 (903)
260 KOG2376 Signal recognition par 95.9 0.081 1.8E-06 55.6 11.3 69 403-489 83-151 (652)
261 COG2912 Uncharacterized conser 95.8 0.079 1.7E-06 50.9 10.2 74 446-519 179-252 (269)
262 KOG3081 Vesicle coat complex C 95.8 0.18 3.9E-06 48.0 12.3 91 413-518 187-278 (299)
263 smart00028 TPR Tetratricopepti 95.8 0.015 3.2E-07 35.5 3.7 32 450-481 3-34 (34)
264 COG4976 Predicted methyltransf 95.7 0.016 3.4E-07 53.7 5.0 60 457-516 4-63 (287)
265 KOG1585 Protein required for f 95.7 0.12 2.6E-06 48.6 10.6 128 406-544 117-250 (308)
266 KOG4340 Uncharacterized conser 95.7 0.051 1.1E-06 52.3 8.3 121 401-536 46-198 (459)
267 PLN03081 pentatricopeptide (PP 95.6 0.11 2.4E-06 58.6 12.4 63 449-511 495-557 (697)
268 PLN03081 pentatricopeptide (PP 95.6 0.14 3E-06 57.9 13.0 143 400-545 392-556 (697)
269 PF05843 Suf: Suppressor of fo 95.5 0.11 2.5E-06 51.3 10.6 128 403-546 5-136 (280)
270 COG3071 HemY Uncharacterized e 95.5 0.31 6.7E-06 49.0 13.3 118 399-535 263-380 (400)
271 KOG4507 Uncharacterized conser 95.4 0.082 1.8E-06 55.4 9.2 131 400-543 213-347 (886)
272 PF10602 RPN7: 26S proteasome 95.4 0.28 6E-06 44.8 11.8 101 397-509 34-140 (177)
273 PF06957 COPI_C: Coatomer (COP 95.3 0.31 6.7E-06 50.3 13.1 123 395-517 200-335 (422)
274 COG3947 Response regulator con 95.3 0.15 3.3E-06 49.1 9.9 75 434-508 265-339 (361)
275 PF04184 ST7: ST7 protein; In 95.3 0.2 4.4E-06 51.9 11.5 127 390-516 182-330 (539)
276 COG4700 Uncharacterized protei 95.2 0.33 7.3E-06 43.8 11.3 82 451-532 92-176 (251)
277 PF04781 DUF627: Protein of un 95.1 0.23 5E-06 40.9 9.2 102 405-511 2-107 (111)
278 KOG3824 Huntingtin interacting 95.1 0.041 9E-07 53.1 5.6 84 395-493 112-195 (472)
279 KOG4814 Uncharacterized conser 95.1 0.33 7.2E-06 51.5 12.5 74 450-523 356-435 (872)
280 PRK04841 transcriptional regul 95.0 0.16 3.5E-06 59.1 11.8 100 402-511 455-560 (903)
281 KOG1915 Cell cycle control pro 95.0 0.49 1.1E-05 48.6 13.2 126 401-543 75-200 (677)
282 PF04184 ST7: ST7 protein; In 95.0 0.21 4.5E-06 51.9 10.6 128 408-536 177-315 (539)
283 PF03704 BTAD: Bacterial trans 95.0 0.15 3.2E-06 44.9 8.7 91 455-546 13-125 (146)
284 PF10952 DUF2753: Protein of u 94.9 0.23 5E-06 41.4 8.6 114 401-524 3-124 (140)
285 PLN03218 maturation of RBCL 1; 94.8 0.48 1E-05 55.5 14.5 58 451-508 652-710 (1060)
286 KOG3364 Membrane protein invol 94.8 0.24 5.2E-06 42.2 8.7 43 449-491 72-114 (149)
287 PLN03218 maturation of RBCL 1; 94.8 0.47 1E-05 55.5 14.3 62 450-511 581-643 (1060)
288 PLN03077 Protein ECB2; Provisi 94.7 0.4 8.7E-06 55.6 13.6 142 399-543 554-717 (857)
289 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.15 3.3E-06 39.0 6.6 69 397-477 4-72 (80)
290 KOG1585 Protein required for f 94.5 1 2.2E-05 42.6 12.9 102 402-512 34-140 (308)
291 PF02259 FAT: FAT domain; Int 94.5 0.67 1.5E-05 47.2 13.4 114 401-514 186-341 (352)
292 PF13374 TPR_10: Tetratricopep 94.3 0.063 1.4E-06 35.6 3.7 28 450-477 4-31 (42)
293 COG3629 DnrI DNA-binding trans 94.3 0.34 7.3E-06 47.3 9.9 74 438-511 143-216 (280)
294 COG2976 Uncharacterized protei 94.2 1.8 4E-05 39.5 13.6 140 405-547 37-189 (207)
295 KOG2610 Uncharacterized conser 94.0 0.98 2.1E-05 44.5 12.1 108 400-507 104-234 (491)
296 PF10300 DUF3808: Protein of u 93.9 0.5 1.1E-05 50.4 11.2 94 414-522 248-345 (468)
297 PF07079 DUF1347: Protein of u 93.7 0.94 2E-05 46.5 11.8 134 394-531 374-545 (549)
298 PF12862 Apc5: Anaphase-promot 93.6 0.41 8.8E-06 38.6 7.8 64 408-477 7-70 (94)
299 PRK10941 hypothetical protein; 93.6 0.44 9.5E-06 46.6 9.3 78 400-492 182-259 (269)
300 PF08631 SPO22: Meiosis protei 93.6 2 4.4E-05 42.3 14.4 104 409-519 3-124 (278)
301 PLN03077 Protein ECB2; Provisi 93.5 0.63 1.4E-05 53.9 12.2 60 451-510 660-719 (857)
302 PF13374 TPR_10: Tetratricopep 93.5 0.17 3.7E-06 33.4 4.6 30 482-511 2-31 (42)
303 KOG2796 Uncharacterized conser 93.5 1 2.2E-05 43.0 10.9 91 446-536 210-306 (366)
304 PF09613 HrpB1_HrpK: Bacterial 93.3 4 8.8E-05 36.2 13.9 114 398-528 9-122 (160)
305 KOG1070 rRNA processing protei 93.2 0.91 2E-05 52.7 12.0 81 448-528 1564-1646(1710)
306 KOG1070 rRNA processing protei 93.1 1.6 3.5E-05 50.7 13.8 83 449-531 1531-1615(1710)
307 KOG2471 TPR repeat-containing 93.1 0.087 1.9E-06 54.1 3.6 97 399-495 283-382 (696)
308 PF12862 Apc5: Anaphase-promot 92.9 0.4 8.8E-06 38.6 6.7 57 457-513 7-72 (94)
309 PF05843 Suf: Suppressor of fo 92.7 1.4 2.9E-05 43.6 11.5 105 402-521 38-146 (280)
310 PF09613 HrpB1_HrpK: Bacterial 92.6 1.5 3.2E-05 39.0 10.1 83 449-531 11-93 (160)
311 PF10602 RPN7: 26S proteasome 92.3 3.5 7.7E-05 37.6 12.9 77 448-524 36-117 (177)
312 KOG2300 Uncharacterized conser 92.3 4.5 9.7E-05 42.1 14.3 100 397-512 365-475 (629)
313 KOG0292 Vesicle coat complex C 92.2 2.4 5.2E-05 47.0 12.9 124 395-518 987-1120(1202)
314 COG5191 Uncharacterized conser 92.1 0.18 3.9E-06 49.0 4.1 76 451-526 110-186 (435)
315 KOG0686 COP9 signalosome, subu 92.0 0.72 1.6E-05 46.6 8.3 98 400-509 151-256 (466)
316 PRK13184 pknD serine/threonine 91.9 1.8 4E-05 49.6 12.6 122 403-530 479-600 (932)
317 COG4976 Predicted methyltransf 91.9 0.21 4.5E-06 46.6 4.1 60 407-481 3-62 (287)
318 PF02259 FAT: FAT domain; Int 91.8 3 6.6E-05 42.3 13.4 126 397-533 144-309 (352)
319 PF10516 SHNi-TPR: SHNi-TPR; 91.5 0.36 7.7E-06 31.6 3.8 29 483-511 2-30 (38)
320 TIGR03504 FimV_Cterm FimV C-te 91.4 0.68 1.5E-05 31.4 5.2 26 485-510 2-27 (44)
321 KOG1550 Extracellular protein 91.0 2.6 5.5E-05 46.1 12.3 92 402-512 291-394 (552)
322 PF10345 Cohesin_load: Cohesin 90.8 5.4 0.00012 44.2 14.7 106 401-506 303-428 (608)
323 PF07720 TPR_3: Tetratricopept 90.6 0.87 1.9E-05 29.4 5.0 33 483-515 2-36 (36)
324 PF04910 Tcf25: Transcriptiona 90.5 2.1 4.5E-05 44.0 10.3 102 412-516 7-138 (360)
325 KOG2610 Uncharacterized conser 90.4 1.4 3.1E-05 43.5 8.3 66 451-516 212-283 (491)
326 PF04910 Tcf25: Transcriptiona 89.5 3.6 7.9E-05 42.2 11.2 81 399-480 40-135 (360)
327 KOG2053 Mitochondrial inherita 89.5 2.1 4.7E-05 47.5 9.8 87 460-547 21-107 (932)
328 PF12968 DUF3856: Domain of Un 89.5 3.5 7.7E-05 34.4 8.7 75 399-477 55-129 (144)
329 cd02681 MIT_calpain7_1 MIT: do 89.3 2.4 5.3E-05 32.5 7.4 35 397-431 4-38 (76)
330 PF07721 TPR_4: Tetratricopept 89.2 0.53 1.2E-05 27.7 2.9 24 483-506 2-25 (26)
331 cd02679 MIT_spastin MIT: domai 88.1 4.3 9.2E-05 31.5 8.0 66 396-461 5-76 (79)
332 cd02682 MIT_AAA_Arch MIT: doma 88.1 2.9 6.2E-05 32.0 6.9 36 397-432 4-39 (75)
333 KOG2300 Uncharacterized conser 88.1 5 0.00011 41.7 10.7 100 398-505 45-150 (629)
334 cd02683 MIT_1 MIT: domain cont 88.1 2.9 6.3E-05 32.3 7.1 35 397-431 4-38 (77)
335 KOG2047 mRNA splicing factor [ 88.0 14 0.00031 39.9 14.2 124 401-536 389-531 (835)
336 PF11817 Foie-gras_1: Foie gra 87.9 2.5 5.5E-05 40.9 8.4 66 402-476 181-246 (247)
337 KOG2422 Uncharacterized conser 87.9 14 0.0003 39.4 13.9 118 326-482 256-377 (665)
338 COG4455 ImpE Protein of avirul 87.4 5.2 0.00011 37.3 9.4 70 456-525 9-78 (273)
339 PF08424 NRDE-2: NRDE-2, neces 87.3 8.3 0.00018 38.9 12.0 87 464-550 47-135 (321)
340 KOG3617 WD40 and TPR repeat-co 87.1 2.3 5E-05 46.8 8.0 114 395-511 854-996 (1416)
341 cd02684 MIT_2 MIT: domain cont 86.6 3.7 8E-05 31.5 6.9 36 396-431 3-38 (75)
342 PF10345 Cohesin_load: Cohesin 86.5 15 0.00034 40.6 14.7 124 387-523 50-182 (608)
343 PF04212 MIT: MIT (microtubule 86.4 3.8 8.2E-05 30.8 6.9 35 397-431 3-37 (69)
344 cd02677 MIT_SNX15 MIT: domain 86.3 5.1 0.00011 30.7 7.5 37 396-432 3-39 (75)
345 COG3898 Uncharacterized membra 86.2 15 0.00032 37.4 12.4 63 462-525 243-305 (531)
346 cd02678 MIT_VPS4 MIT: domain c 86.1 4.5 9.8E-05 31.0 7.3 36 396-431 3-38 (75)
347 PF09986 DUF2225: Uncharacteri 86.1 4.8 0.0001 37.9 8.9 42 450-491 167-209 (214)
348 COG0790 FOG: TPR repeat, SEL1 86.0 16 0.00035 36.0 13.3 105 401-523 111-230 (292)
349 PF15015 NYD-SP12_N: Spermatog 86.0 5.1 0.00011 40.9 9.2 52 487-538 233-284 (569)
350 KOG1497 COP9 signalosome, subu 85.6 20 0.00044 35.4 12.8 90 444-534 99-198 (399)
351 COG2912 Uncharacterized conser 85.6 2.9 6.4E-05 40.4 7.2 71 406-491 188-258 (269)
352 TIGR02561 HrpB1_HrpK type III 85.1 9.2 0.0002 33.5 9.3 71 457-527 19-89 (153)
353 COG3118 Thioredoxin domain-con 84.7 9.9 0.00021 37.2 10.3 53 454-506 140-192 (304)
354 KOG1550 Extracellular protein 84.1 16 0.00035 39.9 13.2 114 399-526 244-370 (552)
355 cd02656 MIT MIT: domain contai 84.1 7.5 0.00016 29.6 7.7 36 397-432 4-39 (75)
356 PF04781 DUF627: Protein of un 83.8 17 0.00038 30.1 9.9 70 454-523 2-85 (111)
357 TIGR02561 HrpB1_HrpK type III 83.2 18 0.00038 31.8 10.2 109 400-525 11-119 (153)
358 PF13281 DUF4071: Domain of un 83.1 43 0.00094 34.3 14.7 97 450-546 143-255 (374)
359 PF13281 DUF4071: Domain of un 83.1 12 0.00025 38.4 10.6 96 414-525 241-348 (374)
360 PF14863 Alkyl_sulf_dimr: Alky 83.1 2.8 6E-05 36.6 5.4 47 451-497 73-119 (141)
361 cd02682 MIT_AAA_Arch MIT: doma 83.0 18 0.00039 27.7 9.1 17 501-517 32-48 (75)
362 PF10373 EST1_DNA_bind: Est1 D 83.0 4.2 9.1E-05 39.8 7.6 62 467-528 1-62 (278)
363 PRK15180 Vi polysaccharide bio 82.9 8.1 0.00018 40.1 9.3 102 404-520 294-395 (831)
364 PF10516 SHNi-TPR: SHNi-TPR; 82.8 2.3 5.1E-05 27.8 3.7 32 400-431 2-33 (38)
365 PF10255 Paf67: RNA polymerase 82.7 3.6 7.9E-05 42.5 6.9 103 445-547 161-267 (404)
366 cd02680 MIT_calpain7_2 MIT: do 82.6 7.1 0.00015 29.9 6.8 35 397-431 4-38 (75)
367 PF14561 TPR_20: Tetratricopep 82.3 6.2 0.00014 31.5 6.8 48 419-481 8-55 (90)
368 KOG2422 Uncharacterized conser 82.3 9.8 0.00021 40.5 9.8 126 403-531 239-393 (665)
369 PF10373 EST1_DNA_bind: Est1 D 82.1 3.5 7.6E-05 40.4 6.6 62 418-494 1-62 (278)
370 PF11817 Foie-gras_1: Foie gra 81.5 15 0.00032 35.5 10.5 84 416-508 155-244 (247)
371 smart00745 MIT Microtubule Int 81.4 11 0.00024 28.8 7.8 36 396-431 5-40 (77)
372 PF10579 Rapsyn_N: Rapsyn N-te 81.2 12 0.00026 28.9 7.5 59 453-511 11-72 (80)
373 COG3914 Spy Predicted O-linked 81.0 11 0.00024 40.3 9.7 77 449-525 102-185 (620)
374 KOG1464 COP9 signalosome, subu 80.8 13 0.00027 35.9 9.2 95 460-556 39-144 (440)
375 KOG1310 WD40 repeat protein [G 80.4 5.7 0.00012 41.8 7.3 74 461-534 387-463 (758)
376 PF07721 TPR_4: Tetratricopept 80.4 2 4.3E-05 25.2 2.5 23 450-472 3-25 (26)
377 KOG0985 Vesicle coat protein c 80.1 16 0.00034 41.7 10.8 109 401-532 1196-1329(1666)
378 PF14863 Alkyl_sulf_dimr: Alky 79.8 10 0.00022 33.0 7.8 54 480-533 68-121 (141)
379 COG3898 Uncharacterized membra 79.4 15 0.00032 37.4 9.5 101 405-526 269-372 (531)
380 KOG3617 WD40 and TPR repeat-co 79.2 12 0.00025 41.7 9.4 103 408-510 809-940 (1416)
381 PHA02537 M terminase endonucle 79.1 6.3 0.00014 37.4 6.7 119 409-531 93-226 (230)
382 COG3914 Spy Predicted O-linked 78.7 21 0.00046 38.2 10.9 72 454-525 73-145 (620)
383 PF10255 Paf67: RNA polymerase 78.4 3.5 7.6E-05 42.6 5.2 59 451-510 125-192 (404)
384 KOG0530 Protein farnesyltransf 78.3 34 0.00074 33.0 11.1 106 411-531 55-162 (318)
385 PF07720 TPR_3: Tetratricopept 78.0 5.3 0.00011 25.7 4.1 31 451-481 4-36 (36)
386 KOG1839 Uncharacterized protei 77.3 7.4 0.00016 45.4 7.7 109 397-512 971-1087(1236)
387 COG4941 Predicted RNA polymera 77.1 23 0.00051 35.3 10.0 75 451-525 332-408 (415)
388 KOG2581 26S proteasome regulat 76.9 14 0.00031 37.6 8.7 67 450-516 211-281 (493)
389 PF09205 DUF1955: Domain of un 76.7 23 0.0005 30.4 8.6 61 451-511 88-149 (161)
390 KOG1839 Uncharacterized protei 75.7 16 0.00034 42.9 9.7 107 397-511 930-1044(1236)
391 COG0790 FOG: TPR repeat, SEL1 75.6 31 0.00066 34.0 11.1 80 416-515 172-270 (292)
392 TIGR03504 FimV_Cterm FimV C-te 73.6 4.9 0.00011 27.2 3.2 27 451-477 2-28 (44)
393 COG2909 MalT ATP-dependent tra 73.1 1.6E+02 0.0034 33.6 16.2 109 397-511 413-526 (894)
394 KOG0530 Protein farnesyltransf 72.2 21 0.00045 34.4 8.1 86 460-545 55-141 (318)
395 KOG2047 mRNA splicing factor [ 70.6 29 0.00063 37.7 9.5 135 396-530 422-600 (835)
396 PF09670 Cas_Cas02710: CRISPR- 69.8 49 0.0011 34.2 11.2 66 398-476 130-197 (379)
397 COG3629 DnrI DNA-binding trans 69.6 17 0.00037 35.6 7.2 75 480-555 151-225 (280)
398 PF04053 Coatomer_WDAD: Coatom 68.6 19 0.00042 38.0 8.0 26 401-426 349-374 (443)
399 PF08424 NRDE-2: NRDE-2, neces 68.5 35 0.00077 34.4 9.7 78 469-547 6-95 (321)
400 PF11846 DUF3366: Domain of un 68.2 29 0.00063 31.9 8.4 52 463-515 126-177 (193)
401 smart00386 HAT HAT (Half-A-TPR 68.1 13 0.00028 22.3 4.2 30 496-525 1-30 (33)
402 KOG0529 Protein geranylgeranyl 68.0 76 0.0016 32.7 11.5 86 458-543 85-175 (421)
403 KOG1463 26S proteasome regulat 67.7 50 0.0011 33.1 9.9 119 402-530 212-332 (411)
404 smart00745 MIT Microtubule Int 67.2 23 0.0005 27.0 6.3 16 500-515 33-48 (77)
405 PF15469 Sec5: Exocyst complex 66.1 28 0.00062 31.7 7.8 25 408-432 95-119 (182)
406 PF11207 DUF2989: Protein of u 64.5 24 0.00052 32.7 6.7 52 480-532 139-194 (203)
407 KOG0276 Vesicle coat complex C 64.4 25 0.00055 37.8 7.6 69 456-529 645-721 (794)
408 KOG3783 Uncharacterized conser 63.9 56 0.0012 34.8 9.9 65 451-515 452-524 (546)
409 COG4649 Uncharacterized protei 63.4 1.2E+02 0.0026 27.6 12.0 99 401-510 96-195 (221)
410 KOG0739 AAA+-type ATPase [Post 63.4 27 0.00059 34.3 7.1 37 395-431 6-42 (439)
411 PRK15180 Vi polysaccharide bio 63.4 15 0.00033 38.2 5.7 61 455-515 364-424 (831)
412 COG2909 MalT ATP-dependent tra 63.3 1.1E+02 0.0023 34.9 12.4 87 400-496 459-551 (894)
413 COG3947 Response regulator con 63.3 22 0.00048 34.7 6.5 50 482-531 279-328 (361)
414 KOG2041 WD40 repeat protein [G 63.3 27 0.00058 38.2 7.6 28 479-506 849-876 (1189)
415 COG5091 SGT1 Suppressor of G2 62.5 23 0.0005 34.0 6.3 124 408-537 4-133 (368)
416 KOG2114 Vacuolar assembly/sort 61.5 37 0.0008 38.0 8.4 34 398-431 367-400 (933)
417 KOG0529 Protein geranylgeranyl 61.3 62 0.0013 33.3 9.5 101 412-527 88-194 (421)
418 PF07079 DUF1347: Protein of u 61.1 79 0.0017 33.1 10.2 99 402-510 9-107 (549)
419 cd02683 MIT_1 MIT: domain cont 60.6 74 0.0016 24.4 7.9 17 500-516 31-47 (77)
420 KOG4459 Membrane-associated pr 60.4 51 0.0011 34.3 8.8 122 402-526 34-177 (471)
421 KOG1914 mRNA cleavage and poly 60.0 47 0.001 35.4 8.6 48 463-510 34-81 (656)
422 COG1747 Uncharacterized N-term 58.9 69 0.0015 34.0 9.5 92 451-546 69-160 (711)
423 PF04212 MIT: MIT (microtubule 58.6 26 0.00057 26.1 5.1 12 503-514 33-44 (69)
424 KOG3783 Uncharacterized conser 58.1 1.6E+02 0.0035 31.5 12.1 95 402-510 270-374 (546)
425 PF00244 14-3-3: 14-3-3 protei 56.8 49 0.0011 31.7 7.8 55 415-476 142-197 (236)
426 PF12739 TRAPPC-Trs85: ER-Golg 56.6 1E+02 0.0023 32.3 10.9 102 401-511 210-329 (414)
427 KOG3807 Predicted membrane pro 56.6 2.2E+02 0.0048 28.6 12.8 27 487-513 280-306 (556)
428 COG1747 Uncharacterized N-term 56.2 1.7E+02 0.0038 31.2 11.7 118 397-515 130-292 (711)
429 PF08238 Sel1: Sel1 repeat; I 55.9 26 0.00056 22.2 4.1 30 482-511 1-37 (39)
430 PF11207 DUF2989: Protein of u 55.4 24 0.00051 32.7 5.0 54 403-468 145-198 (203)
431 COG5159 RPN6 26S proteasome re 55.3 1.1E+02 0.0023 30.2 9.4 62 403-471 7-68 (421)
432 smart00671 SEL1 Sel1-like repe 54.0 29 0.00062 21.4 4.0 29 483-511 2-34 (36)
433 TIGR02710 CRISPR-associated pr 53.5 1.9E+02 0.0042 29.8 11.7 62 401-472 132-195 (380)
434 PF12652 CotJB: CotJB protein; 52.4 53 0.0011 25.4 5.7 56 491-550 4-59 (78)
435 PF10952 DUF2753: Protein of u 52.2 50 0.0011 27.9 5.9 80 451-530 4-107 (140)
436 KOG0985 Vesicle coat protein c 51.9 2.5E+02 0.0054 32.8 12.8 103 404-511 1053-1162(1666)
437 PF12854 PPR_1: PPR repeat 51.9 38 0.00083 21.2 4.2 27 481-507 6-32 (34)
438 KOG0276 Vesicle coat complex C 51.3 1.7E+02 0.0036 31.9 10.9 29 400-428 667-695 (794)
439 PF01239 PPTA: Protein prenylt 50.1 43 0.00093 20.3 4.2 28 467-494 2-29 (31)
440 cd02656 MIT MIT: domain contai 49.9 69 0.0015 24.2 6.2 14 501-514 32-45 (75)
441 KOG0546 HSP90 co-chaperone CPR 49.7 11 0.00024 37.7 2.1 78 405-497 281-358 (372)
442 KOG1464 COP9 signalosome, subu 48.4 1E+02 0.0022 29.9 8.1 105 404-511 150-260 (440)
443 KOG0889 Histone acetyltransfer 48.1 1.7E+02 0.0036 38.8 11.8 100 445-547 2809-2916(3550)
444 KOG3540 Beta amyloid precursor 47.8 3.6E+02 0.0078 28.4 12.8 107 401-516 269-382 (615)
445 cd02679 MIT_spastin MIT: domai 47.5 34 0.00074 26.5 4.1 15 464-478 5-19 (79)
446 PRK13184 pknD serine/threonine 47.4 96 0.0021 36.1 9.3 65 451-517 555-626 (932)
447 KOG3616 Selective LIM binding 46.2 1.5E+02 0.0032 33.1 9.7 48 460-508 744-791 (1636)
448 PF04053 Coatomer_WDAD: Coatom 45.9 2.1E+02 0.0046 30.3 11.0 46 459-509 329-374 (443)
449 PF01535 PPR: PPR repeat; Int 45.5 29 0.00063 20.4 2.9 26 451-476 3-28 (31)
450 PF07163 Pex26: Pex26 protein; 45.5 3.1E+02 0.0067 27.0 11.3 111 404-517 40-152 (309)
451 PF09797 NatB_MDM20: N-acetylt 45.4 89 0.0019 32.1 8.2 47 461-507 196-242 (365)
452 COG3014 Uncharacterized protei 45.4 2.1E+02 0.0045 28.9 9.9 110 396-515 122-246 (449)
453 KOG2561 Adaptor protein NUB1, 44.7 1.8E+02 0.0039 30.3 9.6 112 395-510 159-295 (568)
454 KOG1463 26S proteasome regulat 44.5 3.5E+02 0.0077 27.4 12.6 68 444-511 124-197 (411)
455 PF02064 MAS20: MAS20 protein 43.8 53 0.0011 27.8 5.0 40 392-431 56-95 (121)
456 COG3014 Uncharacterized protei 43.6 2.2E+02 0.0048 28.7 9.8 131 402-533 61-244 (449)
457 PRK15326 type III secretion sy 42.2 1.2E+02 0.0026 23.5 6.2 41 496-536 21-61 (80)
458 cd02677 MIT_SNX15 MIT: domain 41.5 1.1E+02 0.0024 23.4 6.0 15 496-510 20-34 (75)
459 PF07219 HemY_N: HemY protein 41.2 2E+02 0.0043 23.6 8.8 48 450-497 61-108 (108)
460 PF04190 DUF410: Protein of un 40.7 2.9E+02 0.0064 26.8 10.5 102 401-506 12-114 (260)
461 KOG2581 26S proteasome regulat 40.5 3.2E+02 0.0068 28.4 10.5 110 397-518 245-356 (493)
462 KOG2582 COP9 signalosome, subu 40.4 44 0.00094 33.8 4.5 100 401-511 104-212 (422)
463 KOG4563 Cell cycle-regulated h 40.3 91 0.002 31.6 6.7 39 394-432 36-74 (400)
464 KOG1811 Predicted Zn2+-binding 40.2 59 0.0013 35.0 5.7 84 461-550 569-653 (1141)
465 KOG3807 Predicted membrane pro 39.4 3.4E+02 0.0073 27.3 10.3 93 415-507 232-336 (556)
466 PF10938 YfdX: YfdX protein; 39.0 1E+02 0.0022 27.4 6.4 110 400-510 3-145 (155)
467 cd02681 MIT_calpain7_1 MIT: do 38.8 1.8E+02 0.0039 22.3 7.4 23 453-475 11-33 (76)
468 COG5600 Transcription-associat 38.8 2.5E+02 0.0055 28.7 9.5 104 408-514 139-252 (413)
469 KOG2041 WD40 repeat protein [G 38.1 1.2E+02 0.0026 33.5 7.6 70 446-527 794-863 (1189)
470 PF04010 DUF357: Protein of un 36.6 1.2E+02 0.0026 23.2 5.5 39 391-429 27-65 (75)
471 cd02678 MIT_VPS4 MIT: domain c 36.3 1.9E+02 0.0041 21.9 8.0 15 501-515 32-46 (75)
472 TIGR00756 PPR pentatricopeptid 36.0 61 0.0013 19.4 3.4 26 451-476 3-28 (35)
473 PF13812 PPR_3: Pentatricopept 36.0 67 0.0014 19.3 3.6 26 451-476 4-29 (34)
474 TIGR00985 3a0801s04tom mitocho 35.5 1E+02 0.0023 27.0 5.7 41 391-431 82-123 (148)
475 smart00101 14_3_3 14-3-3 homol 35.3 1.4E+02 0.003 28.8 7.0 55 415-476 144-199 (244)
476 KOG3616 Selective LIM binding 34.8 69 0.0015 35.5 5.3 49 455-505 798-847 (1636)
477 cd00280 TRFH Telomeric Repeat 34.8 2.2E+02 0.0048 26.1 7.7 30 454-484 117-146 (200)
478 PF13041 PPR_2: PPR repeat fam 33.8 1.5E+02 0.0033 20.0 6.0 26 485-510 6-31 (50)
479 COG4455 ImpE Protein of avirul 33.7 4.2E+02 0.0092 25.2 12.4 62 406-482 8-69 (273)
480 COG5159 RPN6 26S proteasome re 33.1 3.7E+02 0.008 26.6 9.3 70 442-511 119-194 (421)
481 KOG4056 Translocase of outer m 32.3 1.1E+02 0.0025 26.3 5.2 42 390-431 72-113 (143)
482 PLN00122 serine/threonine prot 32.1 2.5E+02 0.0055 25.3 7.7 70 479-548 94-164 (170)
483 COG5191 Uncharacterized conser 31.9 1.1E+02 0.0023 30.5 5.6 71 408-493 116-190 (435)
484 cd09034 BRO1_Alix_like Protein 31.6 3.7E+02 0.008 27.2 10.1 150 395-544 114-321 (345)
485 KOG4014 Uncharacterized conser 31.2 2.7E+02 0.0059 25.5 7.6 33 457-491 177-209 (248)
486 PF13226 DUF4034: Domain of un 30.9 5.3E+02 0.011 25.4 10.9 115 405-525 6-142 (277)
487 PF10475 DUF2450: Protein of u 30.0 3.7E+02 0.008 26.5 9.5 94 397-509 125-224 (291)
488 PF02064 MAS20: MAS20 protein 29.9 1.3E+02 0.0028 25.5 5.2 36 487-522 68-103 (121)
489 PRK15490 Vi polysaccharide bio 29.9 3.8E+02 0.0083 29.3 10.0 51 454-506 48-98 (578)
490 smart00459 Sorb Sorbin homolog 29.5 25 0.00054 24.2 0.7 16 537-552 29-44 (50)
491 PRK11619 lytic murein transgly 29.4 1.4E+02 0.0031 33.3 7.0 54 457-510 321-374 (644)
492 PF10938 YfdX: YfdX protein; 29.3 2.8E+02 0.006 24.6 7.5 71 398-476 74-145 (155)
493 KOG0890 Protein kinase of the 29.3 8.9E+02 0.019 31.4 13.6 67 444-512 1666-1732(2382)
494 COG4649 Uncharacterized protei 29.3 1.3E+02 0.0029 27.3 5.3 50 445-495 164-213 (221)
495 KOG2396 HAT (Half-A-TPR) repea 29.3 2.4E+02 0.0052 30.0 7.9 59 412-485 118-177 (568)
496 PF08969 USP8_dimer: USP8 dime 29.3 1.7E+02 0.0036 24.3 5.9 42 388-429 27-68 (115)
497 KOG1920 IkappaB kinase complex 29.1 6.2E+02 0.014 30.2 11.7 112 390-509 865-979 (1265)
498 KOG1538 Uncharacterized conser 27.3 1.7E+02 0.0037 32.1 6.6 49 457-508 782-830 (1081)
499 PF07219 HemY_N: HemY protein 27.0 1.2E+02 0.0026 24.9 4.5 36 393-428 53-88 (108)
500 KOG0739 AAA+-type ATPase [Post 26.9 6.5E+02 0.014 25.2 10.9 63 464-534 7-70 (439)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-65 Score=494.96 Aligned_cols=354 Identities=51% Similarity=0.820 Sum_probs=333.5
Q ss_pred ecCccccCCCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCC
Q 008540 161 KEGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKS 237 (562)
Q Consensus 161 ~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~ 237 (562)
++|+|+..|..|+.|.+||++++.+|+.|++| +|+.|.+|.|+++.||..++.+|+. |+.+.|
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence 36889999999999999999999999999998 5999999999999999999999998 555555
Q ss_pred CCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCC-CCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcc
Q 008540 238 ASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQ 316 (562)
Q Consensus 238 ~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~ 316 (562)
+.||++++|.|+|+|. |++|+|+|+++|.| ..+|..|..|+|||.|.+.|+ +|+++..
T Consensus 67 -----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~----- 125 (397)
T KOG0543|consen 67 -----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL----- 125 (397)
T ss_pred -----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----
Confidence 6799999999999998 89999999999999 789999999999999999888 7776543
Q ss_pred cEEEEcCC-cchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee-eccccccCChHH
Q 008540 317 LFEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEE 394 (562)
Q Consensus 317 ~~~~~lg~-~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~-~~~~~~~~~~~e 394 (562)
.|+|.+|+ ..+|.||++||++|++||++.|+|+|+|+||+.+.. .+.|||++++.|+|+|++|. +....|.|..++
T Consensus 126 ~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e 203 (397)
T KOG0543|consen 126 RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEE 203 (397)
T ss_pred ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHH
Confidence 38888999 689999999999999999999999999999955433 47899999999999999999 889999999999
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
++..|...++.||.+|+.|+|..|...|++|+..+......++++......++..||+|+|.||+|+++|.+|+.+|++|
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPK 551 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 551 (562)
|+++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|++++.+|..|+++.++++.+++++|++||+++....
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~ 360 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEES 360 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987553
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-37 Score=299.28 Aligned_cols=349 Identities=36% Similarity=0.545 Sum_probs=271.3
Q ss_pred EcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCC
Q 008540 45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS 124 (562)
Q Consensus 45 ~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~ 124 (562)
++|.|+..|..||.|.+||++++.||+.||||.+ +.|+.|.+|.|.+|.||..++..|+. |+.+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~ 65 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS 65 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence 4799999999999999999999999999999998 79999999999999999999999988 77888
Q ss_pred CCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCcc-ccCCCCCCeEEEEEEEEeCCCeEeecc-cceEEEecC-
Q 008540 125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD- 201 (562)
Q Consensus 125 ~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~- 201 (562)
++.+|++.++.|+|+|+ |+.++++|+++|.| ...|+.|..|.+||.+.+.++ +|+++ ..+.|.+|.
T Consensus 66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~ 134 (397)
T KOG0543|consen 66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED 134 (397)
T ss_pred CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence 89999999999999997 89999999999999 999999999999999999888 66665 567888888
Q ss_pred CCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC
Q 008540 202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281 (562)
Q Consensus 202 ~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~ 281 (562)
..++.||+.+|..|++||++.|+|+|+++||+.+.. .+.||||++|.|+|+|++|....+-+
T Consensus 135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s-------------- 196 (397)
T KOG0543|consen 135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES-------------- 196 (397)
T ss_pred cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence 479999999999999999999999999999954432 37899999999999999997422211
Q ss_pred CCCCCCCCCEEEEEEEE-EecCCcEEEecCCCCCcccEEEEcCCcc-hhhHHHHHHhccCCCcEEEEEEcCCCccCCccc
Q 008540 282 GFERPNEGAVVKVKLIG-KLQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES 359 (562)
Q Consensus 282 g~~~p~~~~~v~v~~~~-~~~~g~~~~~~~~~~~~~~~~~~lg~~~-v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~ 359 (562)
-..++..++.... ..+.|+.+ |.-|+.. -..-.++|+.. +..+..+.
T Consensus 197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~----------l~~~~~~~---- 245 (397)
T KOG0543|consen 197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSF----------LEYRRSFD---- 245 (397)
T ss_pred ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHH----------hhccccCC----
Confidence 0001110111110 01123222 2223321 12223333322 21111110
Q ss_pred cccccCCCCCccEEEEEEEeeeeeccccccCChHH--HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh
Q 008540 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE--KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD 437 (562)
Q Consensus 360 ~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~ 437 (562)
..... .--....+.+.+.++.+.++|..|+...+++|.+.+.+...
T Consensus 246 ------------------------------~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA-- 293 (397)
T KOG0543|consen 246 ------------------------------EEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA-- 293 (397)
T ss_pred ------------------------------HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH--
Confidence 01111 11223567889999999999999999999999998876544
Q ss_pred HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 008540 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP 513 (562)
Q Consensus 438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~p 513 (562)
++.+|.+++.+++|+.|+.++++|++++|+|-.+...+..|..+..++.+. .+.|.+.+..-+
T Consensus 294 -------------LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 -------------LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -------------HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 889999999999999999999999999999988888888888888877655 677777776533
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=271.57 Aligned_cols=277 Identities=26% Similarity=0.378 Sum_probs=239.9
Q ss_pred CCcceEEEEEecCCCC-CCCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEE
Q 008540 268 DDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (562)
Q Consensus 268 ~d~~v~k~il~~G~g~-~~p~~~~~v~v~~~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~ 344 (562)
...+|.|+||.+|.|. +.-..|++|++||.+...+ ++++|+++. .+.|+++++|.....+.||.+|++|.++|++
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3567899999999985 3456799999999998764 478998875 7999999999999999999999999999999
Q ss_pred EEEEcCC----CccCCccccc---------------ccc---------------CCCCCccEEEEEEEeeeee----ccc
Q 008540 345 LLTIAPE----YAFGSAESQQ---------------ELA---------------VVPPNSTVHYEVELVSFEK----EKE 386 (562)
Q Consensus 345 ~v~i~~~----~~yg~~~~~~---------------~~~---------------~ip~~~~l~f~ieL~~~~~----~~~ 386 (562)
.|+|+.. |.|-++.... ... .....++|.|.++|+.+.. ..+
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 9988743 3333321110 000 0012368999999998863 468
Q ss_pred cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
.|+|+.++|+..+..++++||.+|+.|+|.+|...|..|+-.+.+.. ...+.+|.++......+++|+++|+++.++
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 89999999999999999999999999999999999999998877532 345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKFYGN 542 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (562)
|.+++++|+.+|..+|.|+||||+||+|+....+..+|.++|.++|+++|.- +.+.++|+.+..++.+.+..++..|++
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k 325 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK 325 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 478899999999999999999999999
Q ss_pred hccc
Q 008540 543 MFAK 546 (562)
Q Consensus 543 ~f~~ 546 (562)
||+.
T Consensus 326 mfs~ 329 (329)
T KOG0545|consen 326 MFSQ 329 (329)
T ss_pred hcCC
Confidence 9973
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-29 Score=215.90 Aligned_cols=169 Identities=32% Similarity=0.472 Sum_probs=139.7
Q ss_pred EEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeecc---ccccCcceeEeeee
Q 008540 85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVK---DICKDGGIIKKILK 161 (562)
Q Consensus 85 ~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~---~~~~d~~~~k~i~~ 161 (562)
|.+|.+.+|+|.+.++.||..|+++++++||+++||..+.. .-..+++.+.++...... .......+...+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~ 76 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK 76 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence 45788999999999999999999999999999999965542 112456666665544322 22334444444443
Q ss_pred c-CccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008540 162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236 (562)
Q Consensus 162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~ 236 (562)
. ......+..||.+++||++.+.||++||+| +|+.|++|.+++++||+.+|.+|++||+|++.|||++|||+.|.
T Consensus 77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~ 156 (188)
T KOG0549|consen 77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA 156 (188)
T ss_pred CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence 3 335677889999999999999999999998 79999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCeEEEEEEeecccc
Q 008540 237 SASGNEGAVPPNATLQIALELVSWKT 262 (562)
Q Consensus 237 ~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (562)
+ +.||++++|+|+|+|+....
T Consensus 157 ~-----~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 157 P-----PKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred C-----CCCCCCeeEEEEEEEEEeec
Confidence 6 56999999999999999764
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-28 Score=210.87 Aligned_cols=176 Identities=28% Similarity=0.467 Sum_probs=144.8
Q ss_pred EEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccc---eeecCCcceE
Q 008540 197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTV---SEITDDKKVI 273 (562)
Q Consensus 197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~---~~~~~d~~v~ 273 (562)
+++|.+.++++.+.++.+|+.|++++|++||+++||..+. .....+++.+.+..+... +....+..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---------GDLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---------ccccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 4678899999999999999999999999999999995544 223345666666554321 2222334444
Q ss_pred EEEEecC-CCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCC
Q 008540 274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY 352 (562)
Q Consensus 274 k~il~~G-~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~~ 352 (562)
-.++..- .+..+...||.+++||++.++||++||+++. +++|++|+||.++||+|||++|..||+||+..++|||++
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L 149 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL 149 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence 4454442 2667888999999999999999999999874 889999999999999999999999999999999999999
Q ss_pred ccCCccccccccCCCCCccEEEEEEEeeeeeccc
Q 008540 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386 (562)
Q Consensus 353 ~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~ 386 (562)
+||+.+..+ .||++++|+|+|+|..+.....
T Consensus 150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 999998764 5999999999999999886543
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.6e-27 Score=178.46 Aligned_cols=106 Identities=58% Similarity=1.029 Sum_probs=103.3
Q ss_pred CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCC
Q 008540 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (562)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~ 117 (562)
|+.++++.+|+|...|+.||.|++||++.+.||+.|||+.+++.|+.|.+|.|.+|.||++++..|.+||+++++|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 68899999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 118 AYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 118 ~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
|||..+.+..||||++|+|+|||+++
T Consensus 82 aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCCCccCCCcEEEEEEEEEec
Confidence 99999999999999999999999976
No 7
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.1e-27 Score=206.90 Aligned_cols=108 Identities=57% Similarity=0.977 Sum_probs=104.6
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
.++++|++|++++.|+| ..|..++.|.|||++++.||++|||++++++|+.|.|| ++|+||.+||.+|++|++++++
T Consensus 97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~ 173 (205)
T COG0545 97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT 173 (205)
T ss_pred eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence 45999999999999999 89999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
|||++|||..+.++.||||++|+|+|+|+++
T Consensus 174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 9999999999988789999999999999986
No 8
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=164.25 Aligned_cols=105 Identities=38% Similarity=0.655 Sum_probs=98.8
Q ss_pred eEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCC
Q 008540 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351 (562)
Q Consensus 272 v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~ 351 (562)
+-+.+|.+|+|...|..|++|++||++.+.||+.||++. +++.||.|.+|.+++|.||+.++..|.+||++.++|+|+
T Consensus 3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd 80 (108)
T KOG0544|consen 3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD 80 (108)
T ss_pred ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence 667899999999999999999999999999999999876 589999999999999999999999999999999999999
Q ss_pred CccCCccccccccCCCCCccEEEEEEEeee
Q 008540 352 YAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (562)
Q Consensus 352 ~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (562)
|+||..+.+ ..||||++|.|+|||+.+
T Consensus 81 ~aYG~~G~p---~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 81 YAYGPRGHP---GGIPPNATLVFDVELLKV 107 (108)
T ss_pred cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence 999998844 589999999999999875
No 9
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=2.4e-22 Score=186.17 Aligned_cols=108 Identities=46% Similarity=0.776 Sum_probs=103.6
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+| +++|||+++|.+|++|++++|+
T Consensus 98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~ 174 (206)
T PRK11570 98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT 174 (206)
T ss_pred EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence 45999999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
|||++|||..+.++.|||+++|+|+|+|++|
T Consensus 175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 175 IPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 9999999999988899999999999999987
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.8e-22 Score=182.47 Aligned_cols=108 Identities=49% Similarity=0.872 Sum_probs=103.2
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEE-EEcCCCccchhHHHHHcccccccEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~-~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
.+.++||.|+.++.|.| +.+..|+.|.|||.+++. +|++||++... .|+. |.+|.+.+|+||+.++.||++|++|+
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 46899999999999999 899999999999999998 99999999974 8999 99999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
|+|||++|||..+.+ .||+|++|+|+|||+.+
T Consensus 194 viIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 999999999999987 89999999999999876
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.87 E-value=2e-21 Score=175.65 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=102.8
Q ss_pred eecCCCeEEEEEEc--ccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540 33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
..+++|++|.++.+ |+| ..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++|++++
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~ 142 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT 142 (177)
T ss_pred eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence 55899999999976 666 67899999999999999999999999874 699999999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
|.|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999888999999999999999885
No 12
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.3e-21 Score=170.27 Aligned_cols=103 Identities=34% Similarity=0.585 Sum_probs=96.3
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
+..+++.+.++..|.| ..|..++.|++||++++.+|++||+| +|+.|.+| ++|+||.+||.+|++|++++++|
T Consensus 98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I 174 (205)
T COG0545 98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI 174 (205)
T ss_pred ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence 4578899999999998 88999999999999999999999997 78999988 99999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
||++|||+.|.+ +.||||++|+|+|+|+++
T Consensus 175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence 999999999975 559999999999999875
No 13
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=9e-21 Score=178.50 Aligned_cols=125 Identities=33% Similarity=0.441 Sum_probs=120.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
+-...|+.+|.+||.+++.++|++|+..|++||.+.|.++.+ |+|+|++|.++|+|+.|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence 677889999999999999999999999999999999998877 99999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+|.+||.+.|+|.|+|.+|+.+|+|++|++.|++||+++|+|...+..|+.+++++++..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999988877654
No 14
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=9.1e-20 Score=175.14 Aligned_cols=110 Identities=49% Similarity=0.876 Sum_probs=103.1
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++ .++|||+++|.+|++|++++|+
T Consensus 142 ~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~ 218 (269)
T PRK10902 142 KTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 218 (269)
T ss_pred EECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEE
Confidence 45899999999999999 78999999999999999999999999988899999997 7999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~ 146 (562)
||++++||..+.+ .||++++|+|+|+|+++.+.
T Consensus 219 IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 219 IPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred ECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence 9999999999865 79999999999999999753
No 15
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=159.35 Aligned_cols=133 Identities=35% Similarity=0.490 Sum_probs=123.3
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
.+..+..++..||.+|+.|+|..|...|..||.++|.... ..+..||.|+|+|++|++.|+.||..|.++
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3678899999999999999999999999999999987553 467788999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
|+++|.+.+|+.|||.+|.++..|++|+++|++.++++|.+.+++..+.+|...+...+++-+
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK 223 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK 223 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888887776544
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.80 E-value=5.5e-19 Score=144.71 Aligned_cols=93 Identities=56% Similarity=0.979 Sum_probs=87.0
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCC-CCC
Q 008540 49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT 127 (562)
Q Consensus 49 G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~-~~~ 127 (562)
|.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||..+. +..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ 80 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK 80 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence 4467999999999999999999999999777799999999999999999999999999999999999999999987 457
Q ss_pred CCCCCcEEEEEEEe
Q 008540 128 IPPNATLQFDVELL 141 (562)
Q Consensus 128 ip~~~~l~~~vel~ 141 (562)
||++++++|+|+|+
T Consensus 81 ip~~~~l~f~Iell 94 (94)
T PF00254_consen 81 IPPNSTLVFEIELL 94 (94)
T ss_dssp BTTTSEEEEEEEEE
T ss_pred cCCCCeEEEEEEEC
Confidence 99999999999985
No 17
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.77 E-value=1.5e-18 Score=154.03 Aligned_cols=132 Identities=23% Similarity=0.346 Sum_probs=98.3
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
.++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.||++|++++|.|||++|||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d-------- 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS-------- 75 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 578999999999999999999999987679999999999999999999999999999999999999999877
Q ss_pred CcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
..++..+....|...... ..+.........|. +...-..++.|+++|||++++.++.+.-
T Consensus 76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v 138 (156)
T PRK15095 76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI 138 (156)
T ss_pred hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEE
Confidence 445555544444321111 11111111111111 1122334589999999999999987764
No 18
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7e-18 Score=154.55 Aligned_cols=105 Identities=30% Similarity=0.473 Sum_probs=97.8
Q ss_pred cccCcceeEeeeecCccccCCCCCCeEEEEEEEEeC-CCeEeecc---cceE-EEecCCCCcchHHHHHhhccCCcEEEE
Q 008540 149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (562)
Q Consensus 149 ~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~v 223 (562)
.+..+++.+..+..|.| ..+..|++|.++|.+++. .|++|+++ .|.. |.+|.+++|+||+.++.+|++|.+|+|
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 45678889999999998 999999999999999999 89999987 7888 999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
+|||++|||..+.+ .||||++|+|+|+|+..
T Consensus 195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence 99999999999884 89999999999999864
No 19
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.6e-18 Score=150.64 Aligned_cols=136 Identities=26% Similarity=0.366 Sum_probs=100.9
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
++++|+.|+|+|++++.||++||+|.....|+.|.+|.|+++|||++||.||.+|++.+|.|||+.|||+++
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~-------- 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD-------- 73 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC--------
Confidence 478999999999999999999999987568999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEeEeeeccccccCcceeEeeeecC----ccccCCCCCCeEEEEEEEEeCCCeEeecccceEEE
Q 008540 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFT 198 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~ 198 (562)
..++-.+..-.|....+.. .+..+ ....+ .+..+...++.|+++|||++++.++.++-+-..+.
T Consensus 74 ~~lvq~vp~~~F~~~~~~~-vGm~~--~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~ 141 (174)
T COG1047 74 PDLVQRVPRDEFQGVGELE-VGMEV--EAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVR 141 (174)
T ss_pred hHHeEEecHHHhCcCCCCC-CCcEE--EEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEe
Confidence 3444444443343321110 01000 00000 12233345589999999999999998876444443
No 20
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.73 E-value=2.8e-17 Score=148.66 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=93.2
Q ss_pred cCcceeEeeeec--CccccCCCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 151 KDGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 151 ~d~~~~k~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
...++.+.++.. |+| ..|..||.|++||.+++.+|++|+++ .|..|.+|.+++++||+++|.+|++||++++.|
T Consensus 67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i 145 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF 145 (177)
T ss_pred CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence 345666666654 555 67899999999999999999999987 589999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
||++|||..|.+ ..||||++|+|+|+|+++.
T Consensus 146 P~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 146 PSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred CHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence 999999998875 6799999999999999874
No 21
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=5.2e-17 Score=147.57 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=96.3
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
+++++++|+|+|++++.||++|++|+. ..|+.|.+|.++++|+|++||.||++|++++|.|||+.|||+++
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d-------- 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-------- 72 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 467899999999999999999999986 48999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEEeEeeecccc---------ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 132 ATLQFDVELLSWTSVKDI---------CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~---------~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
..++..|..-.|...... ..++.+..++++ ..++.|+|+|||+|++.++.|+-
T Consensus 73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~e--------v~~d~V~vD~NHPLAG~~L~F~v 134 (196)
T PRK10737 73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITA--------VEDDHVVVDGNHMLAGQNLKFNV 134 (196)
T ss_pred hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEE--------EcCCEEEEECCCcCCCCEEEEEE
Confidence 344444444333221111 112222223333 34489999999999999987764
No 22
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=8.1e-17 Score=149.37 Aligned_cols=103 Identities=30% Similarity=0.536 Sum_probs=94.6
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
..+.++.+++++.|.| ..|..+|.|++||.+++.+|++|+++ +|..|.++ ++++||+++|.+|++|+++.|+|
T Consensus 99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 3567889999999999 67999999999999999999999986 68899986 69999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
||++|||+.|.+ +.|||+++|+|+|+|+++
T Consensus 176 P~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAG-----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence 999999998874 679999999999999875
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-15 Score=151.43 Aligned_cols=131 Identities=31% Similarity=0.415 Sum_probs=112.1
Q ss_pred ccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (562)
Q Consensus 388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (562)
-.+..+++...|..++.+||.+|++|+|++||++|++||.++|+.+.+ |.|+|+||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence 346788999999999999999999999999999999999999987766 99999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Q 008540 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+++|.++|+++|+++|||+|||.||..+|++++|+.+..-..-++ =+|..+...+.++.+++.+..
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~k 235 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKK 235 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987543332 234455555555555554443
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.6e-16 Score=156.01 Aligned_cols=117 Identities=36% Similarity=0.499 Sum_probs=111.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+...++.||.+|+.|+|..|+.+|++||...|.+... |+|+|+||.+++++..|+.+|++++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 36778899999999999999999999999999887755 999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+|+++++|+|.|.|+..+.+|++|++.|++++++||++.++...+++|...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999997754
No 25
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.65 E-value=1.4e-15 Score=124.41 Aligned_cols=94 Identities=39% Similarity=0.668 Sum_probs=85.3
Q ss_pred CCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEEcCCCccCCccccc
Q 008540 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ 361 (562)
Q Consensus 282 g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~ 361 (562)
|..+|..|+.|+|||.+++.+|++|+++.. ...|++|.+|.+.+++||+.+|..|+.||++.|.+++.++||+.+...
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence 455799999999999999999999998753 688999999999999999999999999999999999999999987643
Q ss_pred cccCCCCCccEEEEEEEe
Q 008540 362 ELAVVPPNSTVHYEVELV 379 (562)
Q Consensus 362 ~~~~ip~~~~l~f~ieL~ 379 (562)
..||++++|.|+|+|+
T Consensus 79 --~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 --PKIPPNSTLVFEIELL 94 (94)
T ss_dssp --TTBTTTSEEEEEEEEE
T ss_pred --CCcCCCCeEEEEEEEC
Confidence 3599999999999985
No 26
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.65 E-value=5.1e-16 Score=147.54 Aligned_cols=121 Identities=31% Similarity=0.452 Sum_probs=114.2
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (562)
.++.+..+..++++||.||++|.|++|+.+|.+++...|.++.. +.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence 45667888889999999999999999999999999999988876 889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
+.|+.+|...+|||-||+.|...||...+|.++++.+|+|+|++.+.++.++.+..
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988888765
No 27
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.59 E-value=9.3e-15 Score=140.65 Aligned_cols=104 Identities=34% Similarity=0.602 Sum_probs=93.4
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
..+.++.++++..|+| ..|..+|.|.|||.+++.+|++|+++ .|..|.+ ++++|||+++|.+|++|+++.|+|
T Consensus 143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence 3567899999999999 68999999999999999999999986 4666666 479999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (562)
|++++||+.|. +.||||++|+|+|+|+++..
T Consensus 220 P~~laYG~~g~------~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 220 PPELAYGKAGV------PGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CchhhCCCCCC------CCCCCCCcEEEEEEEEEecc
Confidence 99999999876 36999999999999999864
No 28
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-14 Score=141.86 Aligned_cols=128 Identities=25% Similarity=0.376 Sum_probs=116.1
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
..+....++++||..|++|+|..|...|+.||.+.|.+... .+.||.|+|.+..++|+..+|+.+|+.|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 45667889999999999999999999999999999875533 6788999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+.+|+..+|||.++|.||+.+++|++|.++|++|++++.+ .++++.++.++..+++.++
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999877 7788888888777775543
No 29
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2e-14 Score=136.62 Aligned_cols=109 Identities=29% Similarity=0.419 Sum_probs=98.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.|..+++.||.||+.++|..|+.+|+++|..-..+++ +.+.+|+|+|+|++.+|+|..|+.+|.+|+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999999999997666554 4778899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
++|++.||++|-|+|++.|.++.+|..+++..+.++-+++
T Consensus 148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999999999999999999999999998887776654443
No 30
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=6.9e-14 Score=142.84 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..++.+|+.+|..++|..|+..|++|+++.|.+.. +|+++|.||+++|+|++|+.+|++++.++|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45788999999999999999999999999886543 389999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
++..+|+++|.+|+.+|+|++|+..|+++++++|++..+...+..|..++...
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998888654
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=2.7e-13 Score=120.07 Aligned_cols=114 Identities=17% Similarity=0.206 Sum_probs=104.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+...|..+++.|+|++|+..|.+++.+.|.+... ++++|.++.++|+|++|+..|++++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 5568999999999999999999999998876544 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+.+++++|.||..+|++++|+..|++|++++|++.......+.+...+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888777665544
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.3e-13 Score=139.03 Aligned_cols=113 Identities=26% Similarity=0.339 Sum_probs=107.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..++++||..|..|+|+.|+.+|..||.+.|.+... |.|++.||.++++|++|+.+..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999999986554 9999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
|+++|+|.|+|.++..+|+|++|+..|.+.|+.+|+|+.....|....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999988888776
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=5.8e-13 Score=147.05 Aligned_cols=134 Identities=31% Similarity=0.384 Sum_probs=115.9
Q ss_pred CCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 008540 366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445 (562)
Q Consensus 366 ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~ 445 (562)
+|+...+....++..+. ....|.++.+++...+..++++|+.+|+.|+|.+|+..|++|+.+.|. .
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 44445555555554433 455789999999999999999999999999999999999999998773 2
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 13889999999999999999999999999999999999999999999999999999999988877654
No 34
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.6e-13 Score=118.46 Aligned_cols=122 Identities=25% Similarity=0.364 Sum_probs=94.7
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ 244 (562)
...++.|+++|+.++.+|++++++ .|+.|.+|.+++++||++||.+|.+|++..|.|||+.|||+.
T Consensus 3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~---------- 72 (174)
T COG1047 3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY---------- 72 (174)
T ss_pred ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC----------
Confidence 467899999999999999999987 599999999999999999999999999999999999999954
Q ss_pred CCCCCeEEEEEEeeccccceeecCCcceEEEEEecC-----CCCCCCCCCCEEEEEEEEEecCCcEEE
Q 008540 245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-----DGFERPNEGAVVKVKLIGKLQDGTVFV 307 (562)
Q Consensus 245 ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G-----~g~~~p~~~~~v~v~~~~~~~~g~~~~ 307 (562)
+..|+..+.+..|.... +..+-..+..++ .|...-..+.+|+|+|+..|++-++.+
T Consensus 73 ---~~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~f 133 (174)
T COG1047 73 ---DPDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHF 133 (174)
T ss_pred ---ChHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEE
Confidence 44577777777776521 122222222222 133344568889999999997666654
No 35
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.44 E-value=3.3e-13 Score=119.86 Aligned_cols=124 Identities=20% Similarity=0.316 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~ 243 (562)
.+..++.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~--------- 74 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP--------- 74 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence 3567899999999999999999986 699999999999999999999999999999999999999954
Q ss_pred CCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC---CCCCCCCCCEEEEEEEEEecCCcE
Q 008540 244 AVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD---GFERPNEGAVVKVKLIGKLQDGTV 305 (562)
Q Consensus 244 ~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~---g~~~p~~~~~v~v~~~~~~~~g~~ 305 (562)
+..+++.+....|... ....-|..+.-.-..|. +...-..+.+|+|+|++.|++-++
T Consensus 75 ----d~~~v~~vp~~~f~~~-~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L 134 (156)
T PRK15095 75 ----SPDLIQYFSRRDFMDA-GEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTV 134 (156)
T ss_pred ----ChHHEEEecHHHCCcc-cCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEE
Confidence 3446666666666431 11112222111111121 111223456677777777765444
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.1e-13 Score=120.34 Aligned_cols=117 Identities=32% Similarity=0.413 Sum_probs=104.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+.++++.||.+|..+.|..|+..|.+||.+.|..... |.|+|.||+++++|+.+..+|.++++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 468899999999999999999999999999999987766 88999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C--CCHHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID---P--DNRDVKLEYKTLKEK 528 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---p--~~~~~~~~l~~l~~~ 528 (562)
++|+.+|++|.+|.+++....|++|+..+.+|+.+. | .-.++..+|..++.+
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 999999999999999999999999999999997662 1 123677777766443
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=6.9e-12 Score=109.37 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=95.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
-+.+...|..++..|+++.|.+.|+-.+.+.|.+... |+|||.|+..+|+|.+|+..|.+++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567789999999999999999999999999887665 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
|+++.++++.|.||+.+|+.+.|++.|+.|+..--.+
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999986443
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=1.1e-11 Score=108.81 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=103.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+......|..+++.|+++.|+..|++++...|.+... +.++|.|+.+++++.+|+..+++++..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY---------------WLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4557789999999999999999999999987765433 8899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
|.++..++.+|.+|..+|++++|+..|+++++++|++.........+...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776666665443
No 39
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.35 E-value=1.6e-12 Score=130.47 Aligned_cols=122 Identities=22% Similarity=0.306 Sum_probs=115.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.++.+++++|.+|+.+.|+.|+..|.+||++.|++... +.|+|++++|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 46778999999999999999999999999999988777 789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+|...|+|+|+|.+++.++++.+|+.+|++...+.|+++.+++.+..|.....++..
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888877553
No 40
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.35 E-value=2.9e-12 Score=116.68 Aligned_cols=123 Identities=19% Similarity=0.170 Sum_probs=86.7
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
+..++.|+++|+.++.+|++++++ .|+.|++|.++++|+|+++|.+|++|++..|.|||+.|||+.
T Consensus 3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~----------- 71 (196)
T PRK10737 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY----------- 71 (196)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----------
Confidence 456799999999999999999987 899999999999999999999999999999999999999954
Q ss_pred CCCCeEEEEEEeeccccceeecCCcceEEEEEecCC--CCCCCCCCCEEEEEEEEEecCCcE
Q 008540 246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD--GFERPNEGAVVKVKLIGKLQDGTV 305 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~--g~~~p~~~~~v~v~~~~~~~~g~~ 305 (562)
+..+++.|....|..... ...|..+......|. ....-..+++|+|+|+..|++-++
T Consensus 72 --d~~lV~~vpr~~F~~~~~-l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L 130 (196)
T PRK10737 72 --DENLVQRVPKDVFMGVDE-LQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNL 130 (196)
T ss_pred --ChHHEEEecHHHCCCccC-CCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEE
Confidence 445677777766643221 122222211111110 001123455677777777654433
No 41
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.8e-12 Score=123.69 Aligned_cols=155 Identities=31% Similarity=0.450 Sum_probs=137.6
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH----HHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE----KKQAKALKVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (562)
+....+..++..++.|+..|++++|..|...|.+++++....+.....+ +..+...+..++.|+|.|-++.+.|..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 3445667788899999999999999999999999999887422211111 344667788889999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|+..|..+++.++...+||||++++++.+.++++|+++++.|....|++.++...+....++..+++.++++.+.+||+
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
No 42
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.27 E-value=1.7e-11 Score=125.18 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=100.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
.+....+.+.||.|-..+.|++|+.+|.+|+.+-|+.... |.|+|.+|+.+|..+-||..|+++|
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHH
Confidence 3456778899999999999999999999999888876544 6777777777777777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+++|+.+.||.++|.|+-..|+..+|..+|++||.+.|+++++..+|+.++..+...+.+- .+|++.|.
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~-~ly~~al~ 382 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT-RLYLKALE 382 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH-HHHHHHHh
Confidence 7777777777777777777777777777777777777777777777777766666655443 35555544
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.5e-10 Score=115.74 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=98.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+.++|..+...|++..|+..|++|+++.|..... |+++|.++..+|+|++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADA---------------YNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345668899999999999999999999999998875543 89999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
++|++..+++++|.+|..+|++++|+++|+++++++|++.
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999996
No 44
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.19 E-value=2.6e-10 Score=106.57 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=98.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHH-hhccC--HHHHHHHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV 474 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~k~~~--~~~A~~~~~~a 474 (562)
.+..+...|..+...|+++.|+..|++|+++.|.+... ++++|.++ ...|+ +++|+..++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 35678899999999999999999999999999976654 88999974 67787 59999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++.+|+++.+++.+|.++..+|+|++|+..|+++++++|.+.+-...++
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999999999999999999999999999999998765444443
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.19 E-value=5.4e-11 Score=91.08 Aligned_cols=65 Identities=31% Similarity=0.474 Sum_probs=62.8
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP 513 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p 513 (562)
..|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.||..+| ++++|+++|++|++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 358899999999999999999999999999999999999999999999 79999999999999998
No 46
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=7.4e-11 Score=120.61 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=68.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+.+.||.+..+|.++.|.+.|.+|+...|.. ..+++|+|..|..+|++++|+.+|++||+++
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~---------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF---------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 3344445555555555555555555555444432 3346677777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
|+...||.++|..|-.+|+.+.|+.+|.+|+.++|...++..+|+.+.+
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 7666666666666666666666666666666666666666666655543
No 47
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.13 E-value=5.3e-10 Score=123.60 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=100.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHH------HHHHHHHHHHhcHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKK------QAKALKVACNLNNAACK 458 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~------~~~~~~~~~~~nla~~~ 458 (562)
.+..+...|..++..|++++|+..|++++.+.|...... ++-.. ........+++++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445567778888888888888888888888766432110 00000 00011234577788888
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (562)
+.+|+|++|+.+|++++.++|++..+++.+|.+|..+|++++|+..|++++++.|++..+...++.+...+++..++. .
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~-~ 488 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI-E 488 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH-H
Confidence 888888888888888888888888888888888888888888888888888888888777777777777666655443 3
Q ss_pred HHHhhcc
Q 008540 539 FYGNMFA 545 (562)
Q Consensus 539 ~~~~~f~ 545 (562)
.|.+.+.
T Consensus 489 ~~~~Al~ 495 (615)
T TIGR00990 489 KFDTAIE 495 (615)
T ss_pred HHHHHHh
Confidence 5555443
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.12 E-value=2.9e-10 Score=108.86 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=103.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..++.+.+.|+.++.+|+|..|+..|..|++..|++... ++.+|.+|+.+|+-..|+.++.+||+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a---------------ifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQA---------------IFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH---------------HHHHHHHHhhhcCCccchhhHHHHHh
Confidence 346788999999999999999999999999998875433 78999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD---VKLEYKTLKEK 528 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~---~~~~l~~l~~~ 528 (562)
+.|+..-|...||.+++++|+++.|..+|+++|..+|++.. +...+..+.+.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999997654 44444444333
No 49
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=1.4e-09 Score=92.63 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..++++|+|++|+..|.+++...+.+.. ...+++++|.++.+.++|+.|+..+++++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999988765431 123478899999999999999999999999988
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++ ..+++.+|.++..++++++|+..++++++..|++..+.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 86 678999999999999999999999999999999976655443
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.8e-10 Score=119.42 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=87.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------ChHHHHHHHH---------HHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------GDEEKKQAKA---------LKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~~~~~~~~~~---------~~~~~~~nla~~~~ 459 (562)
.+.|...||+|--+++++.|+++|++|+.+.|...-. .+|..+.... -.-.+|+-+|.+|+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 3678999999999999999999999999999853311 1111111111 12334556666666
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
|+++++.|..++++|++++|.|.-.+...|..+.++|+.++|+..|++|+.+||.|+-.+...+.+...+.++.++
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 6666666666666666666666666666666666666666666666666666666655555555554444444433
No 51
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.09 E-value=6e-09 Score=86.33 Aligned_cols=134 Identities=19% Similarity=0.185 Sum_probs=110.7
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
..-++.+..+--+|..+-..|+.+.|++.|.+|+.++|...+. |+|+|+++.-+++.++|+.+++
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHHHH
Confidence 4556777888889999999999999999999999999986665 9999999999999999999999
Q ss_pred HHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 473 KVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 473 ~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
+++++.... ..+|..||..|..+|+.+.|+.+|+.|-++.... ++..|-.+...-.-.+ +|...||.++
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~lNPYAAlCN----~MLa~~f~ql 174 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVELNPYAALCN----QMLADAFDQL 174 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhcChHHHHHH----HHHHHHHHhc
Confidence 999986543 5689999999999999999999999999997665 6666655544433333 3555555554
No 52
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.5e-09 Score=99.13 Aligned_cols=149 Identities=23% Similarity=0.190 Sum_probs=98.3
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC----------------hHHHHHH---HHHHHHHHhcH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG----------------DEEKKQA---KALKVACNLNN 454 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~----------------~~~~~~~---~~~~~~~~~nl 454 (562)
..-..+....+.|..|+++|++..|...+++||+..|+..... .++..+. ..-...+++|.
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 3445677888999999999999999999999999988754320 0010100 01123345666
Q ss_pred HHHHhhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
|.-.+.+|+|++|...+++|+.. -+.....+-++|.|-++.|+++.|..+|+++|+++|+++....++.... +.+.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~--~~~~ 187 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH--YKAG 187 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH--Hhcc
Confidence 66666666666666666666652 1233567778999999999999999999999999999876666665543 3333
Q ss_pred HHHHHHHHHhhc
Q 008540 533 NKKEAKFYGNMF 544 (562)
Q Consensus 533 ~~~~~~~~~~~f 544 (562)
+......|-..|
T Consensus 188 ~y~~Ar~~~~~~ 199 (250)
T COG3063 188 DYAPARLYLERY 199 (250)
T ss_pred cchHHHHHHHHH
Confidence 333444444333
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=5e-09 Score=95.99 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=96.5
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
.+...+..+...|..++..|+|++|+.+|++++...+.... ...++.++|.++.++|+|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45566778899999999999999999999999987654221 234588999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008540 474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~--------------~~~A~~~~~~al~l~p~~ 515 (562)
++..+|.+..+++.+|.+|..+++ +++|++.+++++.++|++
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999988 678888888888889888
No 54
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=9.3e-10 Score=83.08 Aligned_cols=64 Identities=30% Similarity=0.313 Sum_probs=60.3
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
.+|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999984
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.01 E-value=8.8e-10 Score=105.61 Aligned_cols=126 Identities=24% Similarity=0.292 Sum_probs=108.5
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
.++..+....+.+......++|..++..+++.++..|..... +...+--++.||..-+++-+||+.|++
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHHH
Confidence 456666777788888889999999999999999887764433 223355678999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.+.++...
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkk 389 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKK 389 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877755443
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=4.1e-09 Score=119.92 Aligned_cols=120 Identities=5% Similarity=-0.009 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..+.+.|++++|+..|.+|+.+.|.+.. +++|+|.++..+|++++|+..++++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34556666777777777777777777777665443 377888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+++.+++++|.+|..+|++++|+..|++|++++|++..+...++.+..+....+.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888777777766555554443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.5e-09 Score=108.53 Aligned_cols=118 Identities=22% Similarity=0.201 Sum_probs=103.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
-..|..+.-+|..+|-.|++-.|...+.++|.+.+..... |..||+.|+.+++-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 4568889999999999999999999999999998876543 7889999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.+||+|+..||.||+.++-+++|++|+++|++|+.|+|+| +...+..|-...+
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--AYAYIQLCCALYR 440 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 5555555444433
No 58
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=3.8e-09 Score=92.67 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=92.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
-+.....|-.+|++|+|+.|...|+-...+.+.+... ++.||.|+..+++|++|+..|..+..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3556788999999999999999999888877766544 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
++++...|+.|.||+.+|+.+.|+.+|..|+. .|.+..+
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999999999999999999999998 4665443
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.9e-09 Score=103.37 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=100.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+.-.|.+|...++-..|+..|++|++++|.+... |+-+|++|--++...=|+-++++|+.+.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 4455667777777777777777777777777766544 7788888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|++...|.-+|.||.++++.++|+++|++|+...-.+..+...|+++.+++...+++. +.|.+...
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~ 494 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVE 494 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Confidence 8888888888888888888888888888888887777778888888888888776543 45555544
No 60
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.6e-09 Score=106.35 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=113.7
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
-.||-|--+++.+.|+.+|++|+++.|..... |.-+|.-|+.+++-..|+..|++|++++|.+.+
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a---------------WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR 399 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSA---------------WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR 399 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHH---------------HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence 45788888899999999999999999875544 888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
|||-+|++|.-|+...-|+-+|++|+++-|++..++..|+.|..++.+..++.+ -|++.+
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai 459 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAI 459 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999988776654 555544
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=3.6e-09 Score=93.66 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 008540 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL 498 (562)
Q Consensus 419 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~ 498 (562)
...|++|+++.|.. +.++|.++..+|+|++|+..|++++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 35678888776642 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 499 ~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
++|+..|++|+.++|++..++..++.+...+++..++.. .|...
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~A 118 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTA 118 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 999999999999999999999999999888877766543 44443
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=6.5e-09 Score=97.16 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.++..+++..|.+++...|.+... |.++|.+|+.++++++|+..|+++++++|++..+++.+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~---------------w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQ---------------WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566778888888888887766544 88999999999999999999999999999999999999998
Q ss_pred H-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540 492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 492 ~-~~l~~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 550 (562)
+ ...|+ +++|++.++++++++|++..++..++.+.....++.++. ..|+++.+.....
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~~ 177 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAI-ELWQKVLDLNSPR 177 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCC
Confidence 5 67787 599999999999999999999999999988888887665 4777777665443
No 63
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=3.3e-09 Score=85.19 Aligned_cols=99 Identities=34% Similarity=0.445 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+...|..++..|++..|+..|.++++..+... .+++++|.++...+++++|+..+++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999999998766432 34778999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
+..+++.+|.++..+++++.|...+.++++++|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988874
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=1.9e-09 Score=85.99 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=72.0
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
+++|+.|+..|++++...+.+. ....++++|.||+++|+|++|+..+++ +..++.+...++.+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999887521 122467899999999999999999999 88999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 008540 492 YIQMADLDLAEFDIKKA 508 (562)
Q Consensus 492 ~~~l~~~~~A~~~~~~a 508 (562)
|+.+|+|++|++.|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999876
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-08 Score=104.02 Aligned_cols=125 Identities=22% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---------hHHHH-HHHHHH----------------HHHHhcHHHH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEKK-QAKALK----------------VACNLNNAAC 457 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---------~~~~~-~~~~~~----------------~~~~~nla~~ 457 (562)
-.|..|.+.+++..|.++|.+|+.+.|.++-.. .++.. ...-++ ...++|+|.+
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 355666666666666666666666666654221 11111 111122 2348999999
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
+.|++.|.+||..++++|.+.|.++.+|--.|.+|..+|+++.|++.|.+||.++|+|.-+...|+.+.+.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998888888876544
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=8e-09 Score=113.26 Aligned_cols=133 Identities=5% Similarity=-0.037 Sum_probs=118.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|....+.|.+++|...+..++.+.|..... +.|+|.+..+++++++|+..|+++|..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a---------------~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA---------------FILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH---------------HHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 36678889999999999999999999999999875543 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+|+|..+++.+|.++.++|+|++|++.|++++..+|++..++-.++.+.+.+.+.+++. ..|++.++.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~ 217 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDA 217 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999888887776554 356555543
No 67
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-09 Score=112.93 Aligned_cols=140 Identities=23% Similarity=0.373 Sum_probs=111.2
Q ss_pred CCCCcCCCCCCCCcCccCccee---eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEc
Q 008540 11 NEMDADMDLPDDAPMMKVGEEK---EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTL 87 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~ 87 (562)
..++++..++..-|...+.++. .|..-.-...++..-++ . ++.||.|+|+|.++. ||..|++... ..+.|.|
T Consensus 115 v~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~l 189 (441)
T COG0544 115 VELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLEL 189 (441)
T ss_pred eecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEE
Confidence 5566777777777777776544 22223333444545455 3 899999999999975 9999998865 5699999
Q ss_pred CCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeee
Q 008540 88 GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160 (562)
Q Consensus 88 g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~ 160 (562)
|+|++||||+++|.||++|++..|.+..+..|....+ +|.+..|.|.|..+........++.+.+.+.
T Consensus 190 Gs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~ 257 (441)
T COG0544 190 GSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLG 257 (441)
T ss_pred cCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcC
Confidence 9999999999999999999999999999999988776 6799999999999998888877777777553
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=1.3e-08 Score=95.14 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+..+|...+..|+|..|+..+++|..+.|.+... |+-+|.+|.++|+++.|...|.+++++.|+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 34559999999999999999999999999988766 889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
++.++.|+|..|+-.|+++.|...+..+...-+.+..+..+|..+...+....+.+
T Consensus 167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999999999999999999888889999999998877776665544
No 69
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-09 Score=105.42 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=102.9
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (562)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (562)
-..++.++.+...+-.+..++..|.++.|+..|..||.+.|..... |.++|.++++++.+..|++
T Consensus 105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~air 169 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAIR 169 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhhh
Confidence 3567889999999999999999999999999999999998876554 8899999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
+|..+++++|+..+.|-.+++++..+|+|++|..+|..|++++-+
T Consensus 170 D~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 170 DCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999998744
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=3e-08 Score=95.72 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..+++.|+|+.|+..|++++...|.+.. ...+++++|.++.++++|++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998875432 2234789999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 478 ~p~~~k---a~~~~a~a~~~l--------~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
.|++.. +++.+|.++..+ +++++|++.|++++..+|++..+...+
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 998876 799999999987 889999999999999999997655444
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=98.91 E-value=1.3e-08 Score=110.86 Aligned_cols=117 Identities=11% Similarity=-0.071 Sum_probs=68.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+...|..+...|++++|+..|++|+++.|++... ++++|.++..+|++++|+..++++++++|.+
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADI---------------KYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 4455566666666666666666666665544322 5566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+.+++.++.+++.+|++++|+..+++++... |+++.+...++.+...+.+.+
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 5555555555556666666666666666553 455555555555544444433
No 72
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.91 E-value=4.4e-09 Score=110.03 Aligned_cols=101 Identities=23% Similarity=0.402 Sum_probs=88.4
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~ 130 (562)
+.++.||.|.++|+++. +|+.|+++.. .++.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+. +
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~ 216 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----A 216 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----C
Confidence 45789999999999986 8999988753 78999999999999999999999999999999999999987765 6
Q ss_pred CCcEEEEEEEeEeeeccccccCcceeEee
Q 008540 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (562)
Q Consensus 131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (562)
|.++.|.|+|.++.....+..+..+++.+
T Consensus 217 gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 217 GKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 79999999999999876666667776654
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=4.1e-08 Score=89.54 Aligned_cols=110 Identities=18% Similarity=0.097 Sum_probs=92.2
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
....+..+...|..++..|+|+.|+..|++|+.+.+.... ...+++|+|.++.++|++++|+..|.++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446788899999999999999999999999988653211 2335899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 008540 475 LDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR 516 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~-------~l~~~~-------~A~~~~~~al~l~p~~~ 516 (562)
+.++|.+..+++++|.+|. .+|+++ +|+..+++++.++|.+.
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999999 777776 56666667778888774
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=1.5e-08 Score=110.33 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=87.0
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.+++.+|+..+++|+++.|.+... +..+|.++..++++++|+..|+++++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 355899999999999998876544 78899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
|..+|++++|+..|+++++++|.+..+...+
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 9999999999999999999999987654443
No 75
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.87 E-value=2.7e-09 Score=81.57 Aligned_cols=66 Identities=29% Similarity=0.385 Sum_probs=60.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhc
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~ 477 (562)
+..+..+|..++..++|++|+..|++|+++.|.+.. +++|+|.||.+++ ++.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------------~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------------AYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------------HHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 677899999999999999999999999999886443 4999999999999 799999999999999
Q ss_pred CC
Q 008540 478 DS 479 (562)
Q Consensus 478 ~p 479 (562)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 88
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=3.8e-08 Score=93.73 Aligned_cols=134 Identities=14% Similarity=0.158 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHH--------HHHHHHHhcHHHHHh
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAK--------ALKVACNLNNAACKL 459 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~--------~~~~~~~~nla~~~~ 459 (562)
.+...|..++..|+++.|+..|++++...+...... .+-..... ......+.++|.++.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 445566666666666666666666666554322110 00000000 011234667888888
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
.+|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..+++++.+.|.+......+..+....+...+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888888888888888888888888888888877777666666666555444433
No 77
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=96.17 Aligned_cols=91 Identities=25% Similarity=0.321 Sum_probs=82.9
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+-|.-+++.++|++|+..|.+||+++|+|+-.|.+||.||.+||+|+.|++++++|+.+||....++.-|+.++.-+.++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHhhc
Q 008540 533 NKKEAKFYGNMF 544 (562)
Q Consensus 533 ~~~~~~~~~~~f 544 (562)
.++... |++..
T Consensus 166 ~~A~~a-ykKaL 176 (304)
T KOG0553|consen 166 EEAIEA-YKKAL 176 (304)
T ss_pred HHHHHH-HHhhh
Confidence 776654 66554
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=5.1e-08 Score=92.84 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=96.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-HHHHHH------HHHHHHhcHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-KKQAKA------LKVACNLNNAACK 458 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~-~~~~~~------~~~~~~~nla~~~ 458 (562)
.+..+...|..++..|++++|+..|+++++..|..... ..++ ....+. ....++.++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46677889999999999999999999999887653211 0000 000000 1123456677777
Q ss_pred hhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
..+|++++|+..+.+++... +.....++.+|.++..+|++++|+..|.+++..+|++..+...+..+....++..+..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777643 3456677777777777888888888888888777777766666666666555554433
Q ss_pred HHHHHhh
Q 008540 537 AKFYGNM 543 (562)
Q Consensus 537 ~~~~~~~ 543 (562)
..+.+.
T Consensus 190 -~~~~~~ 195 (234)
T TIGR02521 190 -AYLERY 195 (234)
T ss_pred -HHHHHH
Confidence 234443
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.85 E-value=2.5e-08 Score=113.63 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=87.9
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.++.|+|.++.++|++++|+..+++++.++|++..+++++|.++..+|++++|+..|++|++++|++..+...++.+...
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhccc
Q 008540 529 MKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~~ 546 (562)
+.+..++.. .|++.+..
T Consensus 690 lGd~~eA~~-~l~~Al~l 706 (987)
T PRK09782 690 LDDMAATQH-YARLVIDD 706 (987)
T ss_pred CCCHHHHHH-HHHHHHhc
Confidence 888766554 56655543
No 80
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=5.5e-09 Score=108.57 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=116.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
.+.-.++.-.|..|+++++|+.|.-+|++|+.+.|.+... ..-++..+.++|+.++|+..+++|+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 3455778899999999999999999999999999976644 5678999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
.+||.|+-..|.+|.++..+++|++|+..|+..-++.|++..+..+++++.++++....+-+
T Consensus 551 ~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 551 HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999988776543
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=3.6e-08 Score=98.54 Aligned_cols=112 Identities=13% Similarity=0.019 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (562)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~ 492 (562)
...+.++..+.++|...+.++. .....|+++|.+|..+|++.+|+.+++++++++|+++.+|+.+|.+|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-----------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-----------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567788889888865443221 23455899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 493 ~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
..+|++++|+..|++|++++|++..+...++.+....++.+++
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999998888888776555544443
No 82
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.84 E-value=1.6e-08 Score=78.26 Aligned_cols=70 Identities=26% Similarity=0.418 Sum_probs=65.2
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~ 524 (562)
+..|++.++|++|+.++++++.++|+++.+++.+|.+|..+|++.+|+++|+++++++|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999999877666554
No 83
>PRK01490 tig trigger factor; Provisional
Probab=98.83 E-value=1.1e-08 Score=108.00 Aligned_cols=100 Identities=25% Similarity=0.449 Sum_probs=87.2
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
.++.||.|+|+|+++. +|+.|+++.. .++.|.+|.+.++|||+++|.||++|++++|.++++..|+.... +|
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag 228 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG 228 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence 4789999999999997 8999987754 68999999999999999999999999999999999999987665 57
Q ss_pred CcEEEEEEEeEeeeccccccCcceeEee
Q 008540 132 ATLQFDVELLSWTSVKDICKDGGIIKKI 159 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (562)
..+.|.|+|.++.....+..+..+++.+
T Consensus 229 k~~~f~v~v~~V~~~~~pel~Defak~~ 256 (435)
T PRK01490 229 KEATFKVTVKEVKEKELPELDDEFAKKL 256 (435)
T ss_pred CeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 9999999999999876666666666643
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=6.1e-09 Score=106.63 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=92.1
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
..-.|..|+-.++|++|+.+|+.||...|.+... |+.||+.+..-.+..+||..|++||++.|+.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 4468899999999999999999999999987755 8899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
+++.|++|.+++.+|.|++|.++|-.||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998765
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.80 E-value=1.4e-08 Score=100.79 Aligned_cols=133 Identities=19% Similarity=0.186 Sum_probs=100.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+.+.|++++|++.|++|++..|.+... ..+++.++...|+++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~---------------~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA---------------RNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999999975543 6678889999999999999999988888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
|.++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...++.+....++.+++. .++++.+..+
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~l 278 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRLL 278 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 8998999999999999999999999999999999999999999999988888776654 3555555544
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.80 E-value=2.4e-08 Score=87.31 Aligned_cols=110 Identities=13% Similarity=-0.006 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008540 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500 (562)
Q Consensus 421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~ 500 (562)
.|.+++...|.+. ..+.++|.++++.+++++|+..+++++..+|.+..+++++|.+|..++++++
T Consensus 5 ~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQL---------------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHcCChhhH---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5667776655432 2367899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 501 A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|+..|+++++++|.+......++.+....++.+++.+ .|......
T Consensus 70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~ 114 (135)
T TIGR02552 70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK-ALDLAIEI 114 (135)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 9999999999999999999999998888777665543 55555544
No 87
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=1.4e-07 Score=91.67 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=94.6
Q ss_pred hHHHHHHH-HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 402 KKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 402 ~~~~G~~~-~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
..+.+..+ ++.|+|++|+..|++.+...|...- ...+++.+|.+|+.+++|++|+..+.+++...|+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34555555 6679999999999999999987542 2344789999999999999999999999998887
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 481 N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 481 ~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+ ..+++++|.+|..+|++++|+..|+++++..|++..+.....++
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 4 78999999999999999999999999999999997655544433
No 88
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.78 E-value=4.5e-08 Score=108.54 Aligned_cols=115 Identities=21% Similarity=0.190 Sum_probs=76.6
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH----HHHHHHHHHhcCCC
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR 480 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~----A~~~~~~al~~~p~ 480 (562)
.|..+++.|++++|+..|.+++...|.+. .+++++|.++..+|++++ |+..|+++++++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 46677788888888888888887765432 225566666666666664 56666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+..++..+|.+|..+|++++|+..|++++.++|++..+...+..+.....+..+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 666666666666666666666666666666666666666666665555554443
No 89
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.77 E-value=1.9e-08 Score=76.59 Aligned_cols=67 Identities=31% Similarity=0.388 Sum_probs=61.7
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
++.|+|++|+..+++++..+|+|..+++.+|.||++.|++++|+..+++++..+|+++.+...++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998887776653
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.75 E-value=5.1e-07 Score=87.12 Aligned_cols=131 Identities=17% Similarity=0.237 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..++++|+|++|+..|++++...|... ....+.+++|.+|+++++|.+|+..+++.++.+|
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 4466788999999999999999999999887543 2334467999999999999999999999999999
Q ss_pred CC---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHH
Q 008540 480 RN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~------------------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~ 535 (562)
++ ..++|.+|.++..++. ..+|+..|++.++..|+.. +++..+..|+.++.+.+-.
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 77 5689999999866651 3578899999999999975 6667777777777776665
Q ss_pred HHHHHHh
Q 008540 536 EAKFYGN 542 (562)
Q Consensus 536 ~~~~~~~ 542 (562)
-.++|-+
T Consensus 181 ia~~Y~~ 187 (243)
T PRK10866 181 VAEYYTK 187 (243)
T ss_pred HHHHHHH
Confidence 5555543
No 91
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.74 E-value=8.9e-08 Score=106.18 Aligned_cols=117 Identities=10% Similarity=0.044 Sum_probs=93.3
Q ss_pred hhhHHHHHHHHHcCcHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
..+...|..++..|++++ |+..|++++.+.|.+.. ++.++|.++.++|++++|+..+++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------------IVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445678888999999885 78999999988876433 37788999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
.++|++..+++.+|.+|..+|++++|+..|++++..+|++......+..+.....+
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 99999988899999999999999999999999998888876544444444444433
No 92
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.73 E-value=3.6e-07 Score=85.97 Aligned_cols=131 Identities=20% Similarity=0.233 Sum_probs=103.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++++|+|.+|+..|++.+...|...- ...+.+.+|.++++.++|..|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 466788999999999999999999999999887553 23457789999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 479 p~~---~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
|++ ..|+|.+|.+++.+. ...+|+..|+..+...|++. ++...+..|+.++.+.+-.-.++|-
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYY 152 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 469999999988764 24589999999999999985 6667777787777776665555553
No 93
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.71 E-value=3.4e-07 Score=108.37 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=104.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++++|++++|+..|+++++..|...... .....+......+..++|.++++.+++++|+..|++++..+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677889999999999999999999998877544321 01111222233344567889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777766643
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.71 E-value=2.2e-07 Score=85.17 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=104.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+..+.+-|..++.+|+|++|...|++|+.. |.... ....+.|++.|.++.|+++.|..+++++|+
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE------------PSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC------------cchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 34456777788888888888888888887753 21111 123478999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
++|+++-+...++..++..|+|-.|+..+++...--+-+.+...+.-++.+++...... ..|..-++
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a--~~Y~~qL~ 234 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA--QRYQAQLQ 234 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH--HHHHHHHH
Confidence 99999999999999999999999999999999888777777666666676666654433 34544433
No 95
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=2.9e-07 Score=92.21 Aligned_cols=115 Identities=13% Similarity=-0.026 Sum_probs=98.0
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH--HHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~--~~A~~~~~~al 475 (562)
...+..+|..+.+.+ ++.+|+..+.+++...|.+... +++++.+..++++. ++++..++++|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa---------------W~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI---------------WHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------hHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 445667777777777 5788888888888887765544 88898888888874 78899999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
+.+|.|..||+.|+.++..+++|++|++++.++++++|+|..++.....+...
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888887766543
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.3e-07 Score=93.16 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=111.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+.+++-+|.+++-..+.+.|+.+|+++|++.|..... .......-....+-+.|.-.++.|+|..|.+.|..+|.+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 35677889999999999999999999999998865422 111111223344667899999999999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 478 ~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|+| .+.|++||.++..+|+.++|+.+++.|++|||.--.+...-+.|+..+.++..+= +.|.+..+
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q 349 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQ 349 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 9976 6789999999999999999999999999999988555555555666666555432 34444433
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.68 E-value=1.7e-07 Score=82.01 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=83.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.+.+|..++..|++++|...++.++.+||.+...|+++|.|+..+|+|++|+..|.+|+.++|+++.....++.|.-.+.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcc
Q 008540 531 EYNKKEAKFYGNMFA 545 (562)
Q Consensus 531 ~~~~~~~~~~~~~f~ 545 (562)
+...+.+ .|+....
T Consensus 118 ~~~~A~~-aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIK-ALKAVVR 131 (157)
T ss_pred CHHHHHH-HHHHHHH
Confidence 7765543 4444333
No 98
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.68 E-value=4.3e-07 Score=78.11 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=93.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+.+.|...+++|+|..|+..|+......|...-. ..+.++++-+|++.++|.+|+..+++-++++|
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999988877764432 33467899999999999999999999999999
Q ss_pred CCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 008540 480 RNV---KALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 480 ~~~---ka~~~~a~a~~~l~~---------------~~~A~~~~~~al~l~p~~~~~ 518 (562)
+|+ -|+|.+|.+++.+.. ...|..+|++++...|++.-+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 885 589999999999987 889999999999999998644
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=4.7e-07 Score=87.34 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--------cCHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC 471 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~~~~~A~~~~ 471 (562)
..+...|..+++.+++++|+..|+++++..|.+... ..+++++|.|+.++ +++++|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 356778999999999999999999999998876543 12366788888876 8999999999
Q ss_pred HHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHH
Q 008540 472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKMKE 531 (562)
Q Consensus 472 ~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~~~ 531 (562)
++++..+|++..++ +.+|.+|+.+|++.+|+..|+++++..|++ ..++..+..+...+++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986442 467899999999999999999999998765 4677778888777777
Q ss_pred HHHHH
Q 008540 532 YNKKE 536 (562)
Q Consensus 532 ~~~~~ 536 (562)
..+..
T Consensus 219 ~~~A~ 223 (235)
T TIGR03302 219 KDLAQ 223 (235)
T ss_pred HHHHH
Confidence 66554
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.64 E-value=7e-07 Score=96.03 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=80.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHHHHHH---------HHhcHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVA---------CNLNNAACK 458 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~~~~~---------~~~nla~~~ 458 (562)
.+.++..++|.+|.+|+++.|...+..+|+..|....... +..+-+..-.+. .|.-+|...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3678889999999999999999999999999887654411 001111111111 122334444
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
.+++++.+|+-+|.+||+++|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 5566777777777777777777777777777777777777777777777777777
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.63 E-value=3.1e-07 Score=103.87 Aligned_cols=112 Identities=11% Similarity=0.059 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..+.+.|++.+|+..|++++...|.+... +.++|.++...+++++|+..++++++.+|
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 347888999999999999999999999998865433 67899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
++.. ++.+|.++..+|++++|+..|+++++++|++..+...+..+..
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999988887776654
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.62 E-value=4.7e-07 Score=104.24 Aligned_cols=122 Identities=25% Similarity=0.316 Sum_probs=95.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|++++|+..|++++...|..... ++.+|.+++..++|++|+..+++++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------------~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA---------------KLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh---------------HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345667889999999999999999999999887755433 66778888888888888888888888
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
.+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~ 244 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE 244 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888888888888888888888887776666666554444433
No 103
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.61 E-value=4.9e-07 Score=107.00 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------HHH-H---------------HHHHHHHHHHh
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------EEK-K---------------QAKALKVACNL 452 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------~~~-~---------------~~~~~~~~~~~ 452 (562)
..+...|..++..|++++|+..|++++++.|.+..... ++. . ....+....+.
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 45677899999999999999999999998776432100 000 0 01112234566
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
++|.++...+++++|+..|+++++.+|+++.+++++|.+|..+|++++|+..|+++++++|++.++...+..+.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988776655443
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.61 E-value=6e-07 Score=93.53 Aligned_cols=121 Identities=13% Similarity=0.023 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH-------HHHHHHHhcHHHHHhhc
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK-------ALKVACNLNNAACKLKL 461 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~-------~~~~~~~~nla~~~~k~ 461 (562)
+...|..+++.+++++|+..|+++++..+..... ..+-....+ .....++..++.+|.++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 4556666667777777777777777665432111 000000000 00112244555666666
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
|++++|+..++++++.+|++.. +..+|.+|...|++++|+..|+++++.+|++..+...+.
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 6666666666666666665433 355666666666666666666666666666554443333
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=4.2e-07 Score=99.91 Aligned_cols=106 Identities=10% Similarity=-0.090 Sum_probs=97.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
..+.+......++.+++.+++++|+..+++++...|++... ++++|.|+.++|+|++|+..|+++
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence 34556788899999999999999999999999999886655 889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+..+|++.+++..+|.++..+|+.++|...|++|+++...-
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999986544
No 106
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.60 E-value=3.9e-07 Score=104.92 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=58.5
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+++++..+.+.++ .+|+..+++++.+.|+++..+..+|.+|..+|++++|+..|+++++++|.+..+...+..+.....
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 5566666666666 666666666666666666666667777777777777777777777777766666666666655555
Q ss_pred HHHHHHHHHHHhh
Q 008540 531 EYNKKEAKFYGNM 543 (562)
Q Consensus 531 ~~~~~~~~~~~~~ 543 (562)
+..++. ..+++|
T Consensus 886 ~~~~A~-~~~~~~ 897 (899)
T TIGR02917 886 RKAEAR-KELDKL 897 (899)
T ss_pred CHHHHH-HHHHHH
Confidence 544332 344444
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=7.5e-07 Score=71.12 Aligned_cols=86 Identities=34% Similarity=0.435 Sum_probs=78.0
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+++++|.++...+++++|+..+.++++..|.+..+++.+|.+|...+++++|+..|++++.+.|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999988888888777776
Q ss_pred HHHHHH
Q 008540 530 KEYNKK 535 (562)
Q Consensus 530 ~~~~~~ 535 (562)
.+....
T Consensus 82 ~~~~~a 87 (100)
T cd00189 82 GKYEEA 87 (100)
T ss_pred HhHHHH
Confidence 665544
No 108
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.58 E-value=9.2e-08 Score=94.87 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=105.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+.++||..|..|+++.|.+.|+.|+.-...+ ..+++|+++.+-++|+.++|+.++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999999754332 3348899999999999999999999987777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
-+|+..++.+|.+|..+.+...|+++|.+|..+-|+++.+...|+.+..+.....+
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 78999999999999999999999999999999999999999999988776655443
No 109
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.57 E-value=1.2e-06 Score=83.27 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+.+.+-.+++.|+|..|...|..-++..|+..-. ..+++.|+.|++.+|+|+.|...+..+.+-.|.
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~ 210 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK 210 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC
Confidence 37888999999999999999999999999876532 345899999999999999999999999998887
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 481 N---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 481 ~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+ +.+++.+|.|...+++.++|...|+++++-.|+...++..-..+
T Consensus 211 s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 211 SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 7 56799999999999999999999999999999997665544433
No 110
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=7.1e-07 Score=89.44 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=103.2
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHHHH
Q 008540 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR 487 (562)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~ 487 (562)
+...+.+++|+..+.++|.+.|.+... +++++.++.+++ .+++++..++++++.+|+|..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yta---------------W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTV---------------WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 455778999999999999998876543 889999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 488 ~a~a~~~l~~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|+.++.++++. ++++..+.++++++|.|-.++...+.+...+...++ +-..+.++..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~ 170 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLE 170 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence 99999999974 788999999999999999999988888877776543 3445555443
No 111
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.56 E-value=6.6e-07 Score=93.24 Aligned_cols=145 Identities=18% Similarity=0.134 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH-----------HHHHHHhcHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA-----------LKVACNLNNA 455 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~-----------~~~~~~~nla 455 (562)
..+...|..+++.|+++.|+..|.++++..+..... .++-....+. .....++++|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 345566777777777777777777776643321100 0000000000 1233467889
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~ 534 (562)
.++++++++++|+..++++++.+|++..+++.+|.+|..+|++++|++.|++++..+|.+. .+...+..+.....+.++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998873 455566666555555544
Q ss_pred HHHHHHHhhcc
Q 008540 535 KEAKFYGNMFA 545 (562)
Q Consensus 535 ~~~~~~~~~f~ 545 (562)
.. ..+.++..
T Consensus 268 A~-~~l~~~~~ 277 (389)
T PRK11788 268 GL-EFLRRALE 277 (389)
T ss_pred HH-HHHHHHHH
Confidence 43 35555544
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=6e-07 Score=91.94 Aligned_cols=86 Identities=30% Similarity=0.356 Sum_probs=78.0
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+...|...+..++|.+|+..|+++|+++|++..+|+.+|.||+.+|++++|+.++++|+.++|++..+...++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44678889999999999999999999999999999999999999999999999999999999999999888888877776
Q ss_pred HHHHHH
Q 008540 531 EYNKKE 536 (562)
Q Consensus 531 ~~~~~~ 536 (562)
++..+.
T Consensus 85 ~~~eA~ 90 (356)
T PLN03088 85 EYQTAK 90 (356)
T ss_pred CHHHHH
Confidence 655443
No 113
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=3.1e-07 Score=83.16 Aligned_cols=112 Identities=21% Similarity=0.130 Sum_probs=101.6
Q ss_pred cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (562)
.-.++.+++ |.-+.++|+.|-..|-...|...|.+++.+.|..+.. ++.+|.-+...++|+.
T Consensus 56 ~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~v---------------fNyLG~Yl~~a~~fda 117 (297)
T COG4785 56 SRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEV---------------FNYLGIYLTQAGNFDA 117 (297)
T ss_pred hccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH---------------HHHHHHHHHhcccchH
Confidence 344555554 6778999999999999999999999999999876654 8899999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
|.+.++.++++||.+--|+.+||.+++.-|+|.-|.+++.+-.+-||+++
T Consensus 118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999999999999999997
No 114
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.52 E-value=1.6e-06 Score=91.13 Aligned_cols=148 Identities=23% Similarity=0.231 Sum_probs=118.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
+..+..++..|..|...++|.+|+..|++|+.+........ +...+..+.|||..|.+.|+|.+|..+|++|+
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 34455666899999999999999999999999987543221 23456679999999999999999999999999
Q ss_pred hcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDN---RDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 476 ~~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~---~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
++- |.-...+...+..+..++++++|...+++++++ .++| ..++..|+.+...+.++++++ .+
T Consensus 311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~ 389 (508)
T KOG1840|consen 311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL 389 (508)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 863 233567889999999999999999999999986 2334 457788899999999888776 48
Q ss_pred HHhhccccCCCC
Q 008540 540 YGNMFAKMTEPK 551 (562)
Q Consensus 540 ~~~~f~~~~~~~ 551 (562)
|++....+....
T Consensus 390 ~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 390 YKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHhcc
Confidence 888887764443
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.52 E-value=3.2e-07 Score=93.15 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=60.1
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka---~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
..++|+|.+|+++++|++|+..|+++|+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 348899999999999999999999999999999865 999999999999999999999999998
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.51 E-value=1.3e-07 Score=71.22 Aligned_cols=64 Identities=20% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (562)
.+|..+++.|+|++|+..|+++++..|.+. .+++.+|.|+..+|++++|+..++++++.+|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999999887644 3488999999999999999999999999999875
No 117
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.48 E-value=3e-07 Score=72.03 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=57.4
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
....+++|+|.+|..+|+|++|+.++++++.+. + .-..+++++|.+|..+|++++|++.+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356679999999999999999999999999752 2 23679999999999999999999999999976
No 118
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.2e-06 Score=84.06 Aligned_cols=115 Identities=19% Similarity=0.136 Sum_probs=97.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHH
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK 473 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~ 473 (562)
..++.+.-.|..|+..+++..|...|.+|+++.++++.. +.-+|.+++.+. .-.++...+++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 345678899999999999999999999999999987644 445555554433 57889999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+|..||+|+.+++.+|..++..|+|.+|...+++.+++.|.+..-+..+.+..
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999998876666665443
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.47 E-value=1.3e-06 Score=79.51 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=86.6
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---H
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---V 482 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ 482 (562)
.+.+|-.+.|..+...+...++... ......+++++|.++..+++|++|+..+++++.+.|+. .
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 72 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRS 72 (168)
T ss_pred ccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhH
Confidence 3455555666666666644433211 12255668999999999999999999999999987653 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
.+++++|.+|..+|++++|+..|++|+.++|.+......+..+..
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 589999999999999999999999999999999888777777766
No 120
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2.4e-06 Score=92.71 Aligned_cols=119 Identities=24% Similarity=0.242 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+.-.+|.+|-+|+|..+...+..|+..... ..++...++++|.+|..+|+|++|..+|.+++..++
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 45667788888899999999999888875422 234555689999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 480 ~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+| .-+++.+|+.|+..|+++.|..+|+++++..|++.+....|+.+.....
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 98 8999999999999999999999999999999999999999999988774
No 121
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.46 E-value=1.6e-06 Score=98.28 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+..+|..+...|++++|+..+++++...|.+.. +++++|.++..+|++++|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------------l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------------LRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 34457888899999999999999999999887543 388999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++..+++.+|.+++.+++|++|+..++++++.+|+++.+...-+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999986655433
No 122
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.46 E-value=3.4e-07 Score=92.63 Aligned_cols=114 Identities=24% Similarity=0.125 Sum_probs=100.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEK 469 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~ 469 (562)
.+..+.++..+++||..|..+....|+..|.+++...+. .+.+|.|+|.+++|.+ +...|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHHH
Confidence 466778899999999999999999999999999988775 3345899999999964 7889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
+|..|++++|...||+|+++.|+..++++.+|+++...+....|.+.+....
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 9999999999999999999999999999999999999888888866544333
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.45 E-value=2.2e-06 Score=72.69 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=80.8
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK 523 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~ 523 (562)
.++++|..+.++++|++|+..|.+++..+|++ ..+++.+|.++...++++.|+..|++++..+|++ ..+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 47899999999999999999999999999877 6799999999999999999999999999999986 45677777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 008540 524 TLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
.+....++..+.. +.|..+....
T Consensus 84 ~~~~~~~~~~~A~-~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAK-ATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHH-HHHHHHHHHC
Confidence 7776666555443 4666665553
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=1.6e-06 Score=81.21 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=79.2
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
-++..+.+.|+|..|+..++++..++|+++++|.-+|.+|.++|++++|+..|.+|+++.|+++.+..++.-..-...+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999998877776666
Q ss_pred HHHHHHH
Q 008540 533 NKKEAKF 539 (562)
Q Consensus 533 ~~~~~~~ 539 (562)
+.+++.+
T Consensus 185 ~~A~~ll 191 (257)
T COG5010 185 EDAETLL 191 (257)
T ss_pred HHHHHHH
Confidence 6665543
No 125
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.42 E-value=1.9e-06 Score=76.56 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc----------cCHHHHHHHHHHHHhcCCCCHHH
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~~~p~~~ka 484 (562)
|+.|.+.|+.+....|.+... ++|-|.+++.+ ..+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 677888888888877765432 33444443333 46788999999999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 485 ~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
++.+|.||..++. |++|..+|++|..++|+|...+.-|....
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999999875 78999999999999999999888887664
No 126
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.40 E-value=1.3e-06 Score=92.58 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=60.0
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
+..+.+.++-++|..+..+|-.+.+... ..|+-+|.++..++++.+|.+.|..|+.+||+++.+.
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~~l~~---------------~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~ 721 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKIDPLSA---------------SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM 721 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcchhhH---------------HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence 3333444444555555555555544322 2244555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 486 YRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
.-+|.+|+..|+-..|.. .+..|+++||.|.+++..++.+.+.+....
T Consensus 722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 555555555555554544 555555555555555555555555554443
No 127
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.40 E-value=3.2e-06 Score=94.79 Aligned_cols=147 Identities=12% Similarity=0.006 Sum_probs=104.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-C----------h--HHHHHHHHH------HHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-G----------D--EEKKQAKAL------KVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~----------~--~~~~~~~~~------~~~~~~nla~~~~ 459 (562)
+.....++...+++|+|..|+..|.++++..|..... . . +-...++.. ....+..+|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 4467788899999999999999999999998876311 0 0 000111111 1222334466888
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
.+|+|++|+..|+++++.+|+|+.+++-++.+|..+++.++|++.++++..++|.+... ..+..+........ +.-..
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~-~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY-DALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH-HHHHH
Confidence 88999999999999999999999999988899999999999999999999999987655 33333433323332 25667
Q ss_pred HHhhcccc
Q 008540 540 YGNMFAKM 547 (562)
Q Consensus 540 ~~~~f~~~ 547 (562)
|++++...
T Consensus 192 ~ekll~~~ 199 (822)
T PRK14574 192 SSEAVRLA 199 (822)
T ss_pred HHHHHHhC
Confidence 77777654
No 128
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.40 E-value=3.4e-06 Score=91.56 Aligned_cols=145 Identities=19% Similarity=0.210 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
+.+.+.|..+|..|++..|...|.+|+..+...... ++. +...++.-+|+|.|.-.++++..|...|..++..+|
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 457788999999999999999999999874422211 111 233466788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 550 (562)
..+.+|.|+|......++..+|..+++.++.++..|++++..++.+.....++...++ -|..++++....
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k-~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK-KFETILKKTSTK 597 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc-HHHHHHhhhccC
Confidence 9999999999777788899999999999999999999999999988877776655443 455555554433
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.39 E-value=2.9e-06 Score=77.62 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
...+++++|.++...+++++|+.+|++++...|+. ..+++++|.+|..+|++++|+..|++++.++|++......++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 45568999999999999999999999999887653 579999999999999999999999999999999988877777
Q ss_pred HHHHHHH
Q 008540 524 TLKEKMK 530 (562)
Q Consensus 524 ~l~~~~~ 530 (562)
.+...+.
T Consensus 114 ~~~~~~g 120 (172)
T PRK02603 114 VIYHKRG 120 (172)
T ss_pred HHHHHcC
Confidence 7765543
No 130
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.38 E-value=4.6e-07 Score=68.79 Aligned_cols=67 Identities=33% Similarity=0.369 Sum_probs=58.7
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008540 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (562)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (562)
+++.|+|++|+..|++++...|.+... ++++|.||++.|++++|...+++++..+|+++.++.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEA---------------RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHH---------------HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 478899999999999999998875543 77999999999999999999999999999988777766
Q ss_pred HH
Q 008540 489 AQ 490 (562)
Q Consensus 489 a~ 490 (562)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 131
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.37 E-value=2.2e-06 Score=67.07 Aligned_cols=73 Identities=25% Similarity=0.310 Sum_probs=60.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|+|++|+..|++|+++...... .....+.+++|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778899999999999999999999999999443322 1233567799999999999999999999999997
Q ss_pred c
Q 008540 477 L 477 (562)
Q Consensus 477 ~ 477 (562)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=6.8e-06 Score=83.34 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=100.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
....-++..+|..|+++.|...+...+...|++.-. +.-++..+++.++.++|++.+++++.++|
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~P 371 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALDP 371 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 345667778888888888888888877776654432 44567888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (562)
+..-..+++|.+|+++|++.+|+..++..+.-+|+++..+..|+.....+....+....
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 98888889999999999999999999999999999999999998888777765554443
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=5.4e-06 Score=73.52 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=26.1
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
.+++|.+++.+++|++|+..++.+ .-.+-...++..+|.+|..+|++++|+..|++|
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 444455555555555555554331 112222334444555555555555555555444
No 134
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.34 E-value=2.3e-06 Score=65.96 Aligned_cols=70 Identities=23% Similarity=0.301 Sum_probs=63.3
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
.+.++++++|+.|+..+++++.+.|.+... +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 467899999999999999999999987765 88999999999999999999999999999998887
Q ss_pred HHHHH
Q 008540 486 YRRAQ 490 (562)
Q Consensus 486 ~~~a~ 490 (562)
.-+++
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66654
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=91.77 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
+.+..|+-.+.+++|.+|.++++.++++.+-.. ..|++++.|.+++++++.|..+|.+++.++|+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 344455555667899999999999988876543 33899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|..+|.+++.+|..+++-.+|...++.|++.+-+|..++.++-.+.......+++- +.|.++..
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~-~A~~rll~ 615 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI-KAYHRLLD 615 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH-HHHHHHHH
Confidence 99999999999999999999999999999999888888888888887777776543 46666654
No 136
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=84.31 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=97.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------C-hHHHH--------HHHHHHHHHHhcHHHHHhhcc
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------G-DEEKK--------QAKALKVACNLNNAACKLKLK 462 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~----------~-~~~~~--------~~~~~~~~~~~nla~~~~k~~ 462 (562)
+..++..+-..++++.|++.|+.+++..+.+... . ..|.. +.-.....+++|+|+|++--+
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 3444455555566666666666666665543211 0 01110 000112346999999999999
Q ss_pred CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+++-++..+.+|+..-. .-...||++|.+....|++..|..+|+-||..||++.++..+|+.+..+......
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 99999999999998643 3478999999999999999999999999999999999999999999877766543
No 137
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=7.2e-06 Score=84.56 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=81.6
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.++.-||..|.-.++|++|+.+++.||..+|++...|.|+|-.+..-.+.++|+..|++|++|.|+...++..|+....-
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 45667889999999999999999999999999999999999999999999999999999999999999899999988877
Q ss_pred HHHHHHHHH
Q 008540 529 MKEYNKKEA 537 (562)
Q Consensus 529 ~~~~~~~~~ 537 (562)
+..++++-+
T Consensus 511 lG~ykEA~~ 519 (579)
T KOG1125|consen 511 LGAYKEAVK 519 (579)
T ss_pred hhhHHHHHH
Confidence 887776654
No 138
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.28 E-value=4.4e-06 Score=82.92 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=105.4
Q ss_pred HHHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
..+..+.+.|..|... ++++.|+..|++|+++....... .....++.++|.++.++++|++|+..|+++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567788888888888 99999999999999998765422 3355678899999999999999999999998
Q ss_pred hcCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540 476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT 548 (562)
Q Consensus 476 ~~~p~------~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~ 548 (562)
...-+ +++ .+++.+.|++.+|++-.|...|++....+|.... -.+...+...+...+......|.......+
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 75321 233 5578899999999999999999999999997543 334444555566666655556665555444
Q ss_pred CCC
Q 008540 549 EPK 551 (562)
Q Consensus 549 ~~~ 551 (562)
+..
T Consensus 262 ~~~ 264 (282)
T PF14938_consen 262 SIS 264 (282)
T ss_dssp TSS
T ss_pred ccC
Confidence 433
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.27 E-value=1.5e-05 Score=83.84 Aligned_cols=132 Identities=23% Similarity=0.212 Sum_probs=102.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+.+.|..|++.|+|.+|..+|++|+++........ ..-....++|+++.+..++++++|+.++++++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 46688899999999999999999999999999987633222 22344558899999999999999999999998
Q ss_pred hcC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHH
Q 008540 476 DLD-----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEID--------PDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 476 ~~~-----p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
++- + .-.+.+-++|.+|+.+|+|++|.+.|++|+... +........++....+.+.+.+
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 753 2 337888899999999999999999999999763 2222344555555555554443
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=1.3e-05 Score=89.23 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=90.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHH--------
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL-------- 470 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~-------- 470 (562)
...+....+.+...+++++|++....+++..|..... |+.+|..++..+++..|...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv~~l~~~~~ 95 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLLNLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhhhhhhhccc
Confidence 3455667778888999999999999999988876655 44444454444443333332
Q ss_pred ----------HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 471 ----------CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (562)
Q Consensus 471 ----------~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (562)
|...+. .++|-.|++.+|.||-++|++++|.+.|+++++++|+|..+...++-..... ..++...++
T Consensus 96 ~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~ 172 (906)
T PRK14720 96 NLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYL 172 (906)
T ss_pred ccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 222222 3455578888888888888888888888888888888888888887766666 334444566
Q ss_pred Hhhcccc
Q 008540 541 GNMFAKM 547 (562)
Q Consensus 541 ~~~f~~~ 547 (562)
++....+
T Consensus 173 ~KAV~~~ 179 (906)
T PRK14720 173 KKAIYRF 179 (906)
T ss_pred HHHHHHH
Confidence 6555443
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=2.5e-05 Score=79.34 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=94.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+--.|..+++.++..+|.+.+++++.+.|..... ..|+|.++++.|++++|+..++..+.-+|++
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l---------------~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPLL---------------QLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH---------------HHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 4457888999999999999999999999976433 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+..|..+|++|..+|+-.+|...+-..+.+..+-..+...+....++.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999998887777777777777666555555555554443
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.23 E-value=2.2e-06 Score=68.12 Aligned_cols=76 Identities=30% Similarity=0.410 Sum_probs=67.0
Q ss_pred ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
+++|+.|+..++++++.+|. +..+++.+|.||+.+|+|++|+..+++ ++.+|.+..+...+++|...+++++++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 567888899999999999999999999 88999998899999999999988887654
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=1.9e-05 Score=66.92 Aligned_cols=98 Identities=18% Similarity=0.005 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+.+.|..+-..|+.++|+..|++|+...... ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45678889999999999999999999853321 123446789999999999999999999999998787
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 481 ---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
+......++.++..+|++++|+..+-.++.
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888899999999999999999988875
No 144
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=2.9e-05 Score=74.78 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=112.9
Q ss_pred cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHH---------------
Q 008540 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQ--------------- 442 (562)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~--------------- 442 (562)
+.+++.++| ...+.+.|..|+..|-|++|...|...++.-...... ...+|++
T Consensus 98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 344566655 3456788999999999999999997766522111000 0011111
Q ss_pred HHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 008540 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLE 521 (562)
Q Consensus 443 ~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~ 521 (562)
.+-..+..|+.+|..++...+.+.|+....+|++.+|+++.|-.-+|.+++..|+|+.|++.++++++.||+. .++...
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1123456788999999999999999999999999999999999999999999999999999999999999997 477778
Q ss_pred HHHHHHHHHHHHHHHH
Q 008540 522 YKTLKEKMKEYNKKEA 537 (562)
Q Consensus 522 l~~l~~~~~~~~~~~~ 537 (562)
|..|+..+.+...-..
T Consensus 255 L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 255 LYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHhCCHHHHHH
Confidence 8888888776655443
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=6.4e-05 Score=70.14 Aligned_cols=124 Identities=21% Similarity=0.164 Sum_probs=95.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHHHH------HHHHhcHHHHHhhcc
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKALK------VACNLNNAACKLKLK 462 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~~~------~~~~~nla~~~~k~~ 462 (562)
.+-.|..+-..|+|+.|++.|+..+.-.|.+... +.+-.+.+..+. ..+|..+|..|+..+
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 3456777778999999999999988877654322 112222333322 346778999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+|++|.-++++++-+.|.|+-.+.|+|..++-+| +++-|+++|.+|++++|.|......+-.|
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999999999999999999999999999999887 57789999999999999775444444333
No 146
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.16 E-value=1e-05 Score=84.75 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
.+..||.|+++|.+.. +|+.++++ .+..|.+|.+.+++||+++|.||+.|+++.|.+|....|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence 4678999999999977 78888765 78999999999999999999999999999999986657764433
Q ss_pred CCCCeEEEEEEeecccc
Q 008540 246 PPNATLQIALELVSWKT 262 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (562)
++.++.|.|++.++..
T Consensus 216 -~gk~~~f~v~i~~I~~ 231 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKE 231 (408)
T ss_pred -CCCeEEEEEEEEEecc
Confidence 6788999999999765
No 147
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.15 E-value=3.8e-05 Score=78.91 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------Ch--HHHHH-HH------HHHHHHHhcHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EEKKQ-AK------ALKVACNLNNAACK 458 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~--~~~~~-~~------~~~~~~~~nla~~~ 458 (562)
...-+|..++..|+++.|+..++++++..|.+... .. ..... +. .....++.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34467889999999999999999999987765411 00 00000 00 01123456788999
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV----KLEYKTLKEKMKEYNK 534 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~----~~~l~~l~~~~~~~~~ 534 (562)
..+|++++|+..++++++++|++..+++.+|.+|..+|++++|+..+++++.+.|.+... ...+..+.....+.++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999998754322 2345666555555544
Q ss_pred HHHHHHHhh
Q 008540 535 KEAKFYGNM 543 (562)
Q Consensus 535 ~~~~~~~~~ 543 (562)
.. ..|...
T Consensus 205 A~-~~~~~~ 212 (355)
T cd05804 205 AL-AIYDTH 212 (355)
T ss_pred HH-HHHHHH
Confidence 43 344444
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=2.9e-05 Score=81.51 Aligned_cols=139 Identities=15% Similarity=0.058 Sum_probs=108.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
........+..+...|++++|....+++++..|++.... . ..-+....+..++...++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 455667788899999999999999999999888654320 0 112333445568889999999999999
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 008540 478 DSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPK 551 (562)
Q Consensus 478 ~p~~~--ka~~~~a~a~~~l~~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~ 551 (562)
+|+++ ..+..+|..++++|+|++|+++|+ ++++.+|++.... .+..+...+.+.+++ +.+|++-...+-...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQDSLGLMLAIQ 404 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHHHHHHHhccc
Confidence 99999 888899999999999999999999 6888899886644 888888877775554 567777655554433
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=5.4e-05 Score=80.97 Aligned_cols=118 Identities=17% Similarity=0.052 Sum_probs=89.8
Q ss_pred HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCC--------------C---hHHHHHHHHH------------
Q 008540 399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------ 446 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~--------------~---~~~~~~~~~~------------ 446 (562)
|-.+.-+|..++.+.. +..|+.+|++|+++.|..... . ......+...
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3445566666666544 889999999999998864211 1 1111111111
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
...+|.-+|..+...|++++|...+++|+.++| +..+|+.+|++|...|++++|++.|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 113466678888889999999999999999999 5789999999999999999999999999999999864
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.12 E-value=9.4e-05 Score=65.54 Aligned_cols=111 Identities=18% Similarity=0.133 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
..+...|......++...++..+.+|+.+..... .+.......++.....+...++..+...|++++|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4455667777888899999999999999865321 222345567778888889999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
+++..+|.+..+|..+-.+|..+|+..+|+..|+++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 151
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.11 E-value=8.5e-06 Score=80.89 Aligned_cols=132 Identities=20% Similarity=0.187 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+......+++.++++++...+.++........ ...++..+|.++.+.|++++|+..++++|+.+|
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P 177 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELDP 177 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3444555677888999999999988775332111 223477899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|..++..++.++..+|++++|++.++...+..|+++.++..++.+...+++.+++- .+|.+...
T Consensus 178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al-~~~~~~~~ 242 (280)
T PF13429_consen 178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL-EYLEKALK 242 (280)
T ss_dssp T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc-cccccccc
Confidence 999999999999999999999999999998888888888899999888888766544 35555544
No 152
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.11 E-value=4.5e-05 Score=82.52 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
.-|+..+...-+.|++.+|.-+|.+||.+.|.+... ..+++..|.++|++..|...+.+++.++|
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~---------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL---------------IYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH---------------HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 456777777778888999999999999888875433 77999999999999999999999999999
Q ss_pred ----CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540 480 ----RNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT 548 (562)
Q Consensus 480 ----~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~ 548 (562)
....+..+ .++.+...++-+.|++.++.++.. -.+......+..+....- ..++-.+.-.++...-.
T Consensus 273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l-~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK-EKDEASLEDLNILAELFL-KNKQSDKALMKIVDDRN 344 (895)
T ss_pred chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHH-HhHHHHHhhHHHHHHhc
Confidence 33444444 489999999999999999999983 233333444443333333 33334445555555444
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.10 E-value=5.1e-06 Score=53.44 Aligned_cols=34 Identities=41% Similarity=0.614 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3678888888888888888888888888888864
No 154
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.08 E-value=8.7e-05 Score=77.86 Aligned_cols=124 Identities=18% Similarity=0.186 Sum_probs=78.1
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
+.+.+.....+|...+..|+|..|.+...++.+..+.... .+.-.|.++..+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~---------------~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL---------------NLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556778889999999999999999999998887553211 1333455555566666666666666
Q ss_pred HhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 475 l~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
.+..|++. .+....+..++..|+++.|+..+++.++.+|+++.+...+..+....++..
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 65555543 233334666666666666666666666666666655555555554444443
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.07 E-value=2.9e-05 Score=79.18 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=63.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
...+.+..+.++|+.|++.|+|++|+..|++||.+.|++... ..+|+|+|.||.++|++++|+.++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345567889999999999999999999999999999875421 13489999999999999999999999
Q ss_pred HHhcC
Q 008540 474 VLDLD 478 (562)
Q Consensus 474 al~~~ 478 (562)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99973
No 156
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.06 E-value=4e-05 Score=86.12 Aligned_cols=113 Identities=8% Similarity=-0.020 Sum_probs=92.2
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
|..+...|+|++|+..|+++++..|.++.. +.-++..+...+++++|+..+++++..+|.+...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~- 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY- 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence 456667799999999999999999876543 5567899999999999999999999999986554
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 486 ~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
..++.++..++++.+|++.|+++++++|++.++..++-.+....+....
T Consensus 173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Confidence 4455566567778779999999999999999888887776666554443
No 157
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=85.63 Aligned_cols=124 Identities=31% Similarity=0.463 Sum_probs=107.6
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cCHHHHH
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAE 468 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~ 468 (562)
+.+..+..+...+++||.+|++++|..|.-.|..++.++|.+... ...++.|++.|++.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhc
Confidence 556778889999999999999999999999999999999955433 455688998888765 5999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..|+-|+...|...+++++++.+|..++.++-|.+++.-....+|++.++...+.++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el 170 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL 170 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996555544433
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.04 E-value=0.00011 Score=76.87 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
-+.+.+.....+|...+..|+|+.|.+...++-+..+. + ...+...|.+..++|+++.|..++.+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p--------------~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P--------------VVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h--------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35567777888999999999999998666665443211 1 01133335555788888888888888
Q ss_pred HHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 474 al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
+.+.+|++. -.....+..+...|+++.|+..++++.+.+|+|+.+...+..+....++..+
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 888888774 3344558888888888888888888888888888888877777666655544
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00024 Score=62.87 Aligned_cols=133 Identities=19% Similarity=0.125 Sum_probs=99.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
+.+.+..........+..++...+...+.+.+.-.+... +...+.+.+|.+++..|+|++|+..++.+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345566666777777788899888888888777655432 23445778999999999999999999999
Q ss_pred HhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 475 LDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 475 l~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
+...|+. ..+.+++|.+++.+|+|++|+..++.+ .-.+-...+...++.+.....+..++. ..|+
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~-~~y~ 142 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR-AAYQ 142 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH-HHHH
Confidence 9987654 568999999999999999999999763 223334566777777777776665543 3444
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=5.3e-05 Score=73.78 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=78.1
Q ss_pred HHHhcHHHHH-hhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 008540 449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLE 521 (562)
Q Consensus 449 ~~~~nla~~~-~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~ 521 (562)
...++.|..+ ++.++|++|+..|+..+...|++ +.++|++|.+|+..|++++|+..|+++++..|++ .+++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3466788876 67899999999999999999988 5899999999999999999999999999999986 456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
++.+...++... +.+..|+......
T Consensus 223 lg~~~~~~g~~~-~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTA-KAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence 666666555443 3445666665544
No 161
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.02 E-value=4.3e-05 Score=79.81 Aligned_cols=118 Identities=15% Similarity=0.075 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+..+....|..++|...++..++.+...+..... +.-.|+....+|+-++|...+..++..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~ 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence 35566677888899999999988888876655433 334566667788888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+++-+..++..++...
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence 88888888888888888888888888888888888888888887777766544
No 162
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.01 E-value=3.7e-05 Score=79.02 Aligned_cols=99 Identities=15% Similarity=0.021 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..+...|++.+|+..|++++.+.|.+... +.++|.+++..|++++|+..+++++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~---------------~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA---------------VHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH---------------HHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 344567889999999999999999999998876433 78899999999999999999999999887
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 480 RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 480 ~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
.+ ...++.+|.+|..+|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 43 24567899999999999999999999987776
No 163
>PRK01490 tig trigger factor; Provisional
Probab=98.01 E-value=3e-05 Score=81.93 Aligned_cols=84 Identities=15% Similarity=0.283 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
.+..||.|+++|.+.. +|..++.+ .+..|.+|.+.+++||+++|.||+.|+++.|.++....|+...
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~---------- 225 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED---------- 225 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----------
Confidence 4689999999999998 77777754 7899999999999999999999999999999987554665432
Q ss_pred CCCCeEEEEEEeecccc
Q 008540 246 PPNATLQIALELVSWKT 262 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (562)
-++.+..|.|.|.++..
T Consensus 226 lagk~~~f~v~v~~V~~ 242 (435)
T PRK01490 226 LAGKEATFKVTVKEVKE 242 (435)
T ss_pred CCCCeEEEEEEEEEecc
Confidence 25788899999998765
No 164
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.98 E-value=7.3e-05 Score=79.67 Aligned_cols=103 Identities=23% Similarity=0.195 Sum_probs=95.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH--HHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD 476 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~--~~~~al~ 476 (562)
+..+...|..+..+|++.+|...|..|+.+.|.+... ...+|.|+++.|+-.-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 4567889999999999999999999999999987654 6789999999998887877 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
+||.|.+|||.+|.++.++|+.+.|.++|..|++|++.++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999886
No 165
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=4.3e-05 Score=73.61 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (562)
.+.|.+|++.|.+.+|.+.++.++...+.- ..+..++.+|.+..+...|+..+.+.|+.-|.++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V 290 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV 290 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence 478999999999999999999999765521 1244455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
..+.-.|++|..|+++++|.+.|+.+++++|.|.+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE 325 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE 325 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce
Confidence 55555555555555555555555555555555543
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.97 E-value=8.1e-06 Score=52.36 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~ 503 (562)
.|+++|+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 167
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.96 E-value=1.9e-05 Score=50.63 Aligned_cols=34 Identities=41% Similarity=0.560 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+++++.+|.+|+.+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3678888888888888888888888888888875
No 168
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.00029 Score=68.08 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=96.2
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
+.+.|..+.+.+..+....+++.|.....+|+...+.+... -.-+|.+++..|+|+.|++.++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence 45677888899999999999999999999999988876654 346899999999999999999999
Q ss_pred HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540 475 LDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (562)
Q Consensus 475 l~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 520 (562)
++.||.. ...+-.+..||.++|+.++.+.++.++.+..++......
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~ 287 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM 287 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH
Confidence 9999987 567788999999999999999999999998877643333
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=8.4e-05 Score=78.78 Aligned_cols=138 Identities=14% Similarity=0.164 Sum_probs=100.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------------CCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------------SFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
+....+-....+|...|+..+|...-.+-++. +.++ +..+.-++..+.....+...+|...+..++
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKD 500 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchh
Confidence 33344445555666666666666665555552 1111 111222233333334444555666677899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
|.+|..+++..++++|-....||++|.|.+++++++.|.++|.++..++|+|.+++.++...+-++.+..++
T Consensus 501 fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred HHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888777766543
No 170
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.93 E-value=6.3e-05 Score=53.32 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
..+|.+|.+++++|+|++|+.+++.+|+++|+|..+..+...+..++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999988888877766654
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.92 E-value=2.5e-05 Score=53.55 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~ 524 (562)
.+++.+|.+|..+|++++|++.|+++++.+|+|.+++..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777777777777777777777777777777777666653
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=4.3e-05 Score=78.28 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=63.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (562)
.+..++..++-.+|++...+++...|.+. .++...|..+++.++++.|+..++++.++.|++.++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~ 270 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET 270 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence 34455555666667777777665554432 224556777777888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 485 LYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|+.+|.||..+|+|+.|+..++.+--+
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888888888887777655433
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.90 E-value=0.00078 Score=63.71 Aligned_cols=131 Identities=21% Similarity=0.233 Sum_probs=104.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+-++|...++.|+|.+|++.|+......|..+-. -.+.+.++-+++|.++|+.|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999988776654422 2336688999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 479 SRNV---KALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 479 p~~~---ka~~~~a~a~~~l~~--------~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
|+++ -++|-+|.++...=+ -.+|...|+..+.-.|+.. ++...+..++..+...+-.-.++|.
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 578889999877532 3588899999999999975 6777777777777766655544443
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.89 E-value=2.6e-05 Score=75.40 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=59.8
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
..|.-|+|+|.|++||.+|.+++..+|.|+-.+.+||.||+++..|-.|..+++.|+.||-..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y 164 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY 164 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 678899999999999999999999999999999999999999999999999999999998554
No 175
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.88 E-value=0.00021 Score=74.72 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=101.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
........+..+...|+.+.|.....++++. +.+.. .-+...++..+++++++..+++.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~-----------------l~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER-----------------LVLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH-----------------HHHHHhhccCCChHHHHHHHHHHHhh
Confidence 3445567788999999999999999999873 22211 01222334559999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+|+++..++-+|+.++..++|++|++.|+++++++|++.. ...+..+.....+.++. ...|+.-...
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHHHHhh
Confidence 9999999999999999999999999999999999999865 34677787777776655 4566655443
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.00023 Score=60.35 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=71.3
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR---NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK 523 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~---~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~---~~~~~~~l~ 523 (562)
+++++|.++-.+|+.++|+..|++++..... ...++..+|.+|..+|++++|+..|++++.-.|+ +..++..+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4789999999999999999999999997543 3789999999999999999999999999999888 667776666
Q ss_pred HHHHHHHHHHH
Q 008540 524 TLKEKMKEYNK 534 (562)
Q Consensus 524 ~l~~~~~~~~~ 534 (562)
.+.....+.++
T Consensus 83 l~L~~~gr~~e 93 (120)
T PF12688_consen 83 LALYNLGRPKE 93 (120)
T ss_pred HHHHHCCCHHH
Confidence 65544444443
No 177
>PRK11906 transcriptional regulator; Provisional
Probab=97.86 E-value=0.00011 Score=75.04 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHHH---HHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc---------cCHHHHHHHHHHHHhcCCCC
Q 008540 414 KYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 414 ~~~~A~~~y~~al---~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---------~~~~~A~~~~~~al~~~p~~ 481 (562)
....|+..|.+|+ .+.|... .+|.-+|.||+.+ ..-.+|.+..++|++++|.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a---------------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKT---------------ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccH---------------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 4678888999999 5544322 2355556555543 34567888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+.|++.+|.++...++++.|...|++|+.++|+...+....+.+...-
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 888888888888888888888888888888888888777776654333
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.86 E-value=2.9e-05 Score=76.83 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=88.8
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
.++..+...+-+.||.||-.|+|++|+...+.-+.+......- ...-.++.|+|.||.-+++|+.|+++|.
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------AaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------AAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------HHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 3455666778899999999999999999999888776542211 1223458999999999999999999999
Q ss_pred HHHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 473 KVLDLD----S--RNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 473 ~al~~~----p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
+++.+. . ...+.-|.+|..|.-+.++++|+.++.+-|.+.
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 987642 1 235678999999999999999999999888764
No 179
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=9.7e-05 Score=76.18 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=113.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|.-|+--+++.+|.++|.+|..+.+.-... |.-.|..+.-.++.++|+..|..|-++-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa---------------Wl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA---------------WLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH---------------HHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999998876554 8889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
|....-++.+|.-|..+++++.|.++|..|+.+.|+++-+..+++.+.=..+.+.++. .+|++.....
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~-~~f~~~l~~i 444 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEAL-KYFQKALEVI 444 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHH-HHHHHHHHHh
Confidence 9888899999999999999999999999999999999999999998765555555443 4666665433
No 180
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00035 Score=67.41 Aligned_cols=120 Identities=17% Similarity=0.063 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~ 494 (562)
.+..+...+.-+...|.+... |.-||.+|+.++++..|...|.+++++.|+|+..+.-.|.+++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455556666667777766655 77899999999999999999999999999999999999999988
Q ss_pred cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540 495 MAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 495 l~~---~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 550 (562)
..+ ..+|...|++|+.+||+|..++..|+.......++.+. ...+..|.+.+...
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~~lp~~ 260 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLDLLPAD 260 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHhcCCCC
Confidence 754 57999999999999999999999988776666665543 45777777766443
No 181
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.81 E-value=0.00021 Score=71.15 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=90.6
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---hHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...-...|..+|++++|..|+..|..||+++..-.... ......+..+...+-..+..||+++++.+.|+.+..+.+
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 33445678899999999999999999999987643221 122233444444456689999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
.++|.+..-++|.|.|+..|.+|.+|-..+-.|.-
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887776653
No 182
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00025 Score=70.56 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=99.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHHH-HHHHHHHHHH------HhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEEK-KQAKALKVAC------NLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~~~~~-~~~~~~~~~~------~~nla~~~~ 459 (562)
..-+.+.|..+|..|++++|+..|+++..+.|..... .-+.. .....+.... ++--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4456788999999999999999999999888764321 00111 1111111111 222233455
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
..++|..|+.+..++++.+|.|+.+|.-.|.++..+++.++|+-.|+.|..|.|..-++..-|-.++...+
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 68899999999999999999999999999999999999999999999999999998777766655544333
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0004 Score=62.59 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=70.4
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
-+.-+++.|+|.+|...|..||++.|.. .-.|.++|.|+++++.++.|+.++.+|++|+|.+.-+...-+.++.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4666789999999999999999999865 33677999999999999999999999999999985444433445555
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 008540 529 MKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~~~ 547 (562)
+..++. .-.-|+++....
T Consensus 181 ~ek~ee-aleDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEE-ALEDYKKILESD 198 (271)
T ss_pred hhhHHH-HHHHHHHHHHhC
Confidence 544333 234566655443
No 184
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.5e-05 Score=70.43 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=70.2
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
.-+.+++.-+.|..|+..|.++|.++|+.+.+|-++|.||+++.+|+.+..++++|++++|+..-....++.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34566778889999999999999999999999999999999999999999999999999999876666666665555444
Q ss_pred HH
Q 008540 533 NK 534 (562)
Q Consensus 533 ~~ 534 (562)
..
T Consensus 95 ~e 96 (284)
T KOG4642|consen 95 DE 96 (284)
T ss_pred cH
Confidence 43
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.78 E-value=2.9e-05 Score=49.81 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.9
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
.+|+++|.+|..+++|++|+.+|+++|+++|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999975
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.00025 Score=70.37 Aligned_cols=107 Identities=22% Similarity=0.246 Sum_probs=76.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKV 474 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~a 474 (562)
...+..+.+.++. +++.++..|+.+|++|+.+....... .....++.++|.+|... +++++|+++|++|
T Consensus 72 ~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A 141 (282)
T PF14938_consen 72 FEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKA 141 (282)
T ss_dssp HHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444 44457778888888888776544332 23456788999999998 9999999999999
Q ss_pred HhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 475 LDLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 475 l~~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
+++-. +. ..++.+.|.++..+++|++|++.|+++....
T Consensus 142 ~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 142 AELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 98632 11 5677899999999999999999999998753
No 187
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.68 E-value=0.00026 Score=75.36 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=74.1
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..+.+++.+|++|..+|++++|+.++++||+..|+.+..|+.+|++|-++|++.+|.++++.|..+|+.+.-+.....+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999986554444444
Q ss_pred HHHHHHH
Q 008540 526 KEKMKEY 532 (562)
Q Consensus 526 ~~~~~~~ 532 (562)
..+-.+.
T Consensus 272 ~LRa~~~ 278 (517)
T PF12569_consen 272 LLRAGRI 278 (517)
T ss_pred HHHCCCH
Confidence 3333333
No 188
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.68 E-value=0.0011 Score=54.63 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=80.9
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc----
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---- 477 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---- 477 (562)
....|...++.|.|..|...|++|.++-...+.. +.-.-...-.-||--|+.++..+|+|++++....++|.+
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~e---EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAE---EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TT---S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChH---hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 3456777788899999999999999986654422 222223445667889999999999999999999999864
Q ss_pred ---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 478 ---DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 478 ---~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+.+ ++.+-|++|.++..+|+.++|+..|+++-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 332 4778899999999999999999999998653
No 189
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00014 Score=75.68 Aligned_cols=81 Identities=17% Similarity=0.330 Sum_probs=65.6
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA 244 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v--p~~~~~g~~~~~~~~~~~~ 244 (562)
+..||+|+|+|.+.. ||..|... +.+.+.+|.|.++|||+.+|.||+.|+...|.| |.+ |....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~d--y~a~~--------- 225 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPED--YHAEE--------- 225 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccc--cchhH---------
Confidence 789999999999966 66666654 788999999999999999999999999999766 555 43322
Q ss_pred CCCCCeEEEEEEeecccc
Q 008540 245 VPPNATLQIALELVSWKT 262 (562)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (562)
-.|....|.|.|.....
T Consensus 226 -LaGK~a~F~V~vkeVk~ 242 (441)
T COG0544 226 -LAGKEATFKVKVKEVKK 242 (441)
T ss_pred -hCCCceEEEEEEEEEee
Confidence 25667788888888654
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.67 E-value=0.00021 Score=78.09 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=103.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHH------------HHHHHHHHhcHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQA------------KALKVACNLNNAAC 457 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~------------~~~~~~~~~nla~~ 457 (562)
+..+--.|..|-.--+..+|..+|.+|.++++.+... ..++++.. .......+..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3445556666665557788999999999887765322 11112211 11233344558899
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
|++.+++..|+..++.+|+.+|++..+|.-+|.+|...|+|..|++.|.+|..++|.+.-.+...+.+...+.+++..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987776666666666665543
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.66 E-value=8.2e-05 Score=50.92 Aligned_cols=42 Identities=29% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
+++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 477899999999999999999999999999999999998863
No 192
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.1e-05 Score=72.82 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=69.7
Q ss_pred cCCCeEEEEEEcccCCCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540 35 GNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
.-.||.++|+..|.| +-| ..|..|.+||..... .++++|+|+.-|+|+.+++|.---+|-||..|..|+++|.+.
T Consensus 8 ~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred cchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 457899999999999 554 589999999998765 357999999989999999999888999999999999999988
Q ss_pred EEec
Q 008540 111 FTIP 114 (562)
Q Consensus 111 v~ip 114 (562)
|.+.
T Consensus 87 F~~d 90 (329)
T KOG0545|consen 87 FWCD 90 (329)
T ss_pred hhhh
Confidence 8763
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.65 E-value=0.00017 Score=71.51 Aligned_cols=110 Identities=19% Similarity=0.117 Sum_probs=70.9
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHh--hcc--CHHHHHHHHHHHHhcCCCC
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLK--DYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--k~~--~~~~A~~~~~~al~~~p~~ 481 (562)
-..+++.++++.|.+.++.+.++.++. ...++|.++. ..| .+++|...|++.....+.+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t 200 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDS-----------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST 200 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCH-----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcH-----------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence 346677788888887777665442211 1233433333 233 5788888888877776777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+..+..+|.|++.+|+|++|.+.++.|+..+|+++++..++..+...+.+.
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888888888888888887777776665555544
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.63 E-value=0.00085 Score=59.88 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
......|+.+...|+|.+|..+|.+++.=+ -.+. .+++.+|.+++..+++..|...++++.+.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---------------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---------------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---------------HHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 445678999999999999999999998532 1111 236789999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 479 p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
|. .+..+.-.|++|..+|.+.+|+..|+.++...|+-. .+-.+.....++.
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qg 207 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQG 207 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc
Confidence 85 477888999999999999999999999999988753 4444444433333
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00052 Score=65.45 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=80.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT 524 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~ 524 (562)
.+|.|.-+++.|+|..|...+..-+...|++ +.|+|++|.+++.+|+|+.|...|..+.+-.|+++ +....|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6799999999999999999999999999986 68999999999999999999999999999888764 67777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 008540 525 LKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 525 l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
+..++++.+++ +.+|....+..
T Consensus 224 ~~~~l~~~d~A-~atl~qv~k~Y 245 (262)
T COG1729 224 SLGRLGNTDEA-CATLQQVIKRY 245 (262)
T ss_pred HHHHhcCHHHH-HHHHHHHHHHC
Confidence 77777666543 45666665554
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.62 E-value=0.0024 Score=59.95 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=85.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----------cCHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE 468 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~ 468 (562)
......|..+|+.++|..|+..|++.++..|..+.. ..+++.+|.|++++ +...+|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~ 110 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI 110 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence 346788999999999999999999999999986642 23355666665554 4456899
Q ss_pred HHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 469 KLCTKVLDLDSRNVKA-----------------LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 469 ~~~~~al~~~p~~~ka-----------------~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..++..+..-|++..+ -+..|+-|++.|.|..|+.-++.+++..|+.......+..+
T Consensus 111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999999999987322 23578999999999999999999999999987655544444
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.00037 Score=61.56 Aligned_cols=85 Identities=12% Similarity=-0.099 Sum_probs=74.2
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.+..|--++..|++++|...++-...++|.|.+.++.+|.|+..+++|++|+..|-.|..++++|+......+.|...++
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 45678888999999999999999999999999999999999999999999999999999999998876666777766665
Q ss_pred HHHHH
Q 008540 531 EYNKK 535 (562)
Q Consensus 531 ~~~~~ 535 (562)
+...+
T Consensus 120 ~~~~A 124 (165)
T PRK15331 120 KAAKA 124 (165)
T ss_pred CHHHH
Confidence 54433
No 198
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0019 Score=60.57 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=59.3
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC------
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------ 481 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~------ 481 (562)
..+-.++...|..++++.-+.+|..... .--.|..+--.++|++|+++|+..|+-||+|
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV---------------~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KR 125 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRV---------------GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKR 125 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhH---------------HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHH
Confidence 4445677777777777766666544322 1122344444566666666666666666655
Q ss_pred ----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 482 ----------------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 482 ----------------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..||..++..|..+++|++|.-+|+.++-+.|-|+.+...|+.+
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 44555566666666666666666666666666655555555544
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.57 E-value=0.00047 Score=75.45 Aligned_cols=94 Identities=24% Similarity=0.233 Sum_probs=78.3
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-- 533 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~-- 533 (562)
--++.++|++|++.|.++|+.||+|..|++.+|.++..++. .++|.+.|..|.+++|+|.-+++-|..+.++.....
T Consensus 11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~l 90 (1238)
T KOG1127|consen 11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDL 90 (1238)
T ss_pred HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhh
Confidence 34467899999999999999999999999999999999999 999999999999999999999999999988743322
Q ss_pred HHHHHHHHhhccccCCC
Q 008540 534 KKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 534 ~~~~~~~~~~f~~~~~~ 550 (562)
.+....|.+.+..+.++
T Consensus 91 d~~~~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 91 DRAAKCYQRAVLILENQ 107 (1238)
T ss_pred hHhHHHHHHHHHhhhhh
Confidence 23344666666655444
No 200
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.54 E-value=0.00034 Score=78.14 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=83.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHH--HHHHH--HHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK--KQAKA--LKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~--~~~~~--~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
..+.-.|..+++++++..|... .++...+.......-+. ..+.. ....+++.+|.||-++|++++|...++++|
T Consensus 66 ~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 66 SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4466677788888888887777 66766665442211000 00000 112367889999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+++|+|+.++.++|..|... ++++|++.+++|+..
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999875
No 201
>PRK10941 hypothetical protein; Provisional
Probab=97.53 E-value=0.00093 Score=65.00 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=69.4
Q ss_pred HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
.+....+.|+=.+|++.++|+.|+.+++.+|.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|+++.+...
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555677999999999999999999999999999999988889999999999999999999999999998765443
No 202
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.52 E-value=0.00015 Score=46.36 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578889999999999999999999999988854
No 203
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.0009 Score=70.30 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=84.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
..+.+-..|-.+...|+-++|...-..+++...... .||.-+|+.+..-++|++||.+|+.||.+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------------VCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 345555667777777777777777777776544333 23667777777777788888888888887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+|+|...|+-++....++++|+.....-.+.+++.|++...+.-++..+-....+
T Consensus 105 ~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 105 EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777766666655554444443
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0031 Score=59.42 Aligned_cols=115 Identities=21% Similarity=0.313 Sum_probs=88.3
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC------------CChH------------HHHHHH--HHHHHHHhcHH
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS------------FGDE------------EKKQAK--ALKVACNLNNA 455 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~------------~~~~------------~~~~~~--~~~~~~~~nla 455 (562)
.....+.+.-.|+|.-.+..|.+.++..+.... ..+. +...+. .....++.|.|
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344566667777777777777777776532111 0110 011111 12456788999
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
.+|+-.++|..|...+.+++..||.++.|-.++|.|++.+|+..+|++.++.++...|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.00019 Score=45.88 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
.+++++|.+++++|+|++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357899999999999999999999999999986
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.47 E-value=0.00048 Score=59.47 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=62.7
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
+++.|...++.|+|.+|++.++.+....|-. .+|.+.++.+|++.++|++|+..+++.++|+|+++.+
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 6788999999999999999999999988754 7899999999999999999999999999999999743
No 207
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.001 Score=68.32 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=94.8
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.++++.|+..+++.....|. . ..-+|.+++..++-.+|++..+++|...|.+...+.-.|..
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v---------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---V---------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---H---------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56789999999886655432 1 34578888899999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
++..++++.|+...++|..+.|++-..+..|..++..+.+.+.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999999998887764
No 208
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.004 Score=57.66 Aligned_cols=136 Identities=21% Similarity=0.262 Sum_probs=93.9
Q ss_pred hHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 402 KKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 402 ~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
+.+.|..|-.. .++++|+.+|++|-++...+.+ .....+|++..|..-..+++|.+|+..|+++....-+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444443 5789999999999888764332 2345566777777777899999999999999876554
Q ss_pred C------HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 481 N------VK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 481 ~------~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
| +| .++..|.||+...+.-.|...+++..+++|...+. ++...++..+...++.....|......+
T Consensus 187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds-REckflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS-RECKFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4 34 44567999999999999999999999999987643 3334444445555555555555444333
No 209
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.0012 Score=55.28 Aligned_cols=62 Identities=31% Similarity=0.246 Sum_probs=57.3
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.|.+....++.+.|++.+.++|.+.|.++.+|.+||++|.-.|+.++|+.++++|+++....
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 46677788999999999999999999999999999999999999999999999999996543
No 210
>PRK11906 transcriptional regulator; Provisional
Probab=97.43 E-value=0.00086 Score=68.74 Aligned_cols=88 Identities=15% Similarity=0.082 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008540 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493 (562)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~ 493 (562)
+-..|.+.-.+|+++.+.++.. +..+|.+....++++.|+..+++|+.++|+...++|.+|..+.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a---------------~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKI---------------LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 4566777778888887766543 7788888888999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH
Q 008540 494 QMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 494 ~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
..|+.++|++.+++|++++|.-.
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchhh
Confidence 99999999999999999999864
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.43 E-value=0.00068 Score=65.48 Aligned_cols=68 Identities=22% Similarity=0.227 Sum_probs=62.1
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
++..|.-+++.|+|++|+..+++++...|... ++.+++|.+|+++++|++|+..++++++++|+++.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 66788899999999999999999999999874 455999999999999999999999999999998744
No 212
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.43 E-value=0.0004 Score=68.85 Aligned_cols=97 Identities=22% Similarity=0.273 Sum_probs=76.3
Q ss_pred HHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540 408 TLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 408 ~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
..+..| +++.|...|+...+..+.+ ..+++.+|.|++.+|+|++|...+.+++..+|+++.++
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 334444 6999999999865543321 23367899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 008540 486 YRRAQAYIQMADL-DLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 486 ~~~a~a~~~l~~~-~~A~~~~~~al~l~p~~~~~~ 519 (562)
.+++.|...+|+. +.+.+.+.+....+|+++-+.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999999999998 677788888888999986443
No 213
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0016 Score=65.45 Aligned_cols=137 Identities=12% Similarity=-0.025 Sum_probs=105.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHH---------HHHHHHhcHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKA---------LKVACNLNNAA 456 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~----------~~~~~~~~---------~~~~~~~nla~ 456 (562)
++.++.+.+.++.|-...+..+|++.|.++..+.|+++..-. +.....+. -.+...-.+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 455667778888888888888888888888888887653210 00111110 01222346788
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
.|+...-|++||.+++++--+.|+..|-..-.|.|+.+.|+|..|.+.|+..-...|.+-++.+.|-++...+.-.
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 8999999999999999999999999999999999999999999999999999999999999999888776555443
No 214
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.34 E-value=0.0017 Score=54.85 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=68.2
Q ss_pred HHHHHhcHHHHHhhccC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 447 KVACNLNNAACKLKLKD---YKQAEKLCTKVLD-LDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~---~~~A~~~~~~al~-~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
...+.+|+|.|..+..+ -++.+..+...++ -.| ....++|.+|..|+++++|+.|+.+++..++.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34457789999888764 5677888888886 444 346789999999999999999999999999999999988877
Q ss_pred HHHHHHHHH
Q 008540 522 YKTLKEKMK 530 (562)
Q Consensus 522 l~~l~~~~~ 530 (562)
-+.++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 766655554
No 215
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0011 Score=66.16 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=86.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
...+.-+|+.+.+.++.++|+-.|+.|+.+.|. +..+|--+-.||+..+++.+|....+.+++.-
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~---------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY---------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchh---------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 456677788888888888888888888877654 33447777788888888888888888888888
Q ss_pred CCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRA-QAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 479 p~~~ka~~~~a-~a~~~-l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
|++.+++--.| .+++. -.--++|.+.++++|+++|....+...++.+.......
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~ 454 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT 454 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc
Confidence 88888887775 33333 33457888888888888888865555555554444433
No 216
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.00097 Score=65.15 Aligned_cols=105 Identities=20% Similarity=0.154 Sum_probs=79.1
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHH
Q 008540 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (562)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~ 486 (562)
..++.+.+|..|+...+-.+.... |+. ..+-..+|.|++++|+|++|+..|.-+.+.+..+.+.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~-------EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDR-------EEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccch-------hhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence 356778899999888876663321 121 122457899999999999999999999998888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
++|.|++.+|.|.+|...-.+| |.++-..+++-.+..++
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 9999999999999998776654 56665555554443333
No 217
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.29 E-value=0.0008 Score=47.71 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=34.3
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~ 490 (562)
+++.+|..++++|+|..|..+|+.+|+++|+|.+|.--+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 47789999999999999999999999999999887665443
No 218
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.28 E-value=0.00059 Score=70.60 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=90.5
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (562)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a 489 (562)
-..|+-..|+++...|+...|...... ..|+|.+.++-+....|-..+.++|.+.-..+-.+|.+|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 347888999999999998877544332 569999999999999999999999999977788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 490 ~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
.+|+.+.+.+.|++.|+.|++++|++..+...|.++.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999999999999999998888777653
No 219
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.26 E-value=0.0026 Score=66.96 Aligned_cols=71 Identities=14% Similarity=0.002 Sum_probs=40.3
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
|+-+|+++-.+++.+.|...|..-++..|+.+..|..+++.-.+.|+.-.|+..|.++..-+|.|...+.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555444333
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.25 E-value=0.0018 Score=64.55 Aligned_cols=103 Identities=13% Similarity=0.145 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+-+.||++.-.|+|..|+++|++++.+...-.. +..-+...+.+|..|.-+++|++||.+.++-|.+..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999987653221 122334466899999999999999999999877532
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 480 ------RNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 480 ------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
....|++.+|.+|..+|+.++|+.+.++.+++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34789999999999999999999999888765
No 221
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.24 E-value=0.00072 Score=60.38 Aligned_cols=88 Identities=13% Similarity=0.198 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
-|+.|++.++.....+|.+..+++|.|-+++.|.++ ++|+.-|+.||.++|+..++...++.+...+...
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999654 6899999999999999999999988876655542
Q ss_pred ---HHHHHHHHHhhccccCCC
Q 008540 533 ---NKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 533 ---~~~~~~~~~~~f~~~~~~ 550 (562)
....+..|++....+.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHH
Confidence 222334555544444333
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.24 E-value=0.00094 Score=65.46 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=101.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------CC-----ChHH-------------HHHHHHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SF-----GDEE-------------KKQAKALKVA 449 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~~-----~~~~-------------~~~~~~~~~~ 449 (562)
.+.+..+.|..+|.+.++.+|+..+.+.+..+.+.. .. +.++ ..+....+..
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999988765421 00 0011 1112235667
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL---- 520 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~---- 520 (562)
+|.|++..+-++.+|.+++.+|...+.+-... ..++.-+|.||+.++.|++|++.|++|+++.-++.+...
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 79999999999999999999999999874332 468888999999999999999999999998665544333
Q ss_pred --HHHHHHHHHHHHHH
Q 008540 521 --EYKTLKEKMKEYNK 534 (562)
Q Consensus 521 --~l~~l~~~~~~~~~ 534 (562)
.|..+..+++.+++
T Consensus 165 cv~Lgslf~~l~D~~K 180 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEK 180 (518)
T ss_pred hhhHHHHHHHHHhhhH
Confidence 34555555555544
No 223
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.014 Score=57.33 Aligned_cols=71 Identities=20% Similarity=0.158 Sum_probs=62.2
Q ss_pred hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
+.+|.+++-.-.|++||+.|.++|.-+|+..-.-..+|.||+++.-|+-+.+.+.--|..-|+.+-+..+.
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 45677777788899999999999999998888888999999999999999999999999999987555444
No 224
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.13 E-value=0.005 Score=64.92 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHHHHHH---------HHhcHHHHHhhcc
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLK 462 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~~~~~~~~~---------~~~nla~~~~k~~ 462 (562)
.+..-+..++..|+...|.....+|++..|++... ...+.+.++.+..+ +|+.-+....-++
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh
Confidence 45666778888999999999999999988874322 11233444444433 3344455555688
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
+.++|++.|+++|+.-|+..|.|..+|+++.++++.+.|++.|...++.-|...-.+-.|.++.++...
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999877753
No 225
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.12 E-value=0.0016 Score=59.65 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=67.9
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
.++.+++.+|..|-.+|-|.-|.-++.++|.+.|.-+.++..+|.-+...|+|+.|.+.|..++++||.+.-+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya 135 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 135 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH
Confidence 3566688999999999999999999999999999999999999999999999999999999999999998543
No 226
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0054 Score=64.36 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=89.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
-..+.+.+..+|+..+|..|++.|...++.++.+... ....+...|++.||+++.+.+.|.+++.+|-+.+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 3457788999999999999999999999998865422 1236667899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|.++-..+..-++...-+.-++|+..+.+....
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 999988888888999999999999988776644
No 227
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.00 E-value=0.0051 Score=65.70 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=81.0
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+++..+.++...|++++|+.++.+.-..-.+....+-.+|.+|+++|++++|...|+..++.+|+|......|..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 35567788899999999999999988888888999999999999999999999999999999999998888888776222
Q ss_pred H----HHHHHHHHHHHhhccccCCC
Q 008540 530 K----EYNKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 530 ~----~~~~~~~~~~~~~f~~~~~~ 550 (562)
. ...+....+|..+-....++
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s 110 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRS 110 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccc
Confidence 2 23344455666665555443
No 228
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.98 E-value=0.0014 Score=41.39 Aligned_cols=33 Identities=33% Similarity=0.497 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.|+|++|.||..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367888888888888888888888888888764
No 229
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.92 E-value=0.024 Score=56.63 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=99.4
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
.-|...+......|..-+-.|+|.+|.+...++-+.-+. ...+|.--|.+-..+|+++.|-.+..
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 356777888888898888899999999998886654321 22335555677778899999999999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 473 KVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 473 ~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
++-+..+ ++.-.+..+++.+...+++..|+..+.++++..|.++.+.....++..+.+.+..
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 9888733 4567788889999999999999999999999999998888888877777766553
No 230
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0023 Score=61.22 Aligned_cols=93 Identities=22% Similarity=0.350 Sum_probs=77.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~- 477 (562)
|....+.|-.+|+.|+|+.|++.|+.|++.-...+-. -+|+|+|+++.++|..|+++.++.++.
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 5567789999999999999999999999886654433 679999999999999999999998764
Q ss_pred ---CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 478 ---DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 478 ---~p~----------------~---------~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
.|. | +.|+.-++-++++.++++.|.+.+.
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 222 1 3467778899999999999988773
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.87 E-value=0.0063 Score=59.85 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=80.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (562)
+...|+.+...+.|++|++.|+.|+++.....+. .+-..++..++..|-+++++++|+-+..+|+++-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 3447888999999999999999999987765433 123345778899999999999999999888876321
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 481 ---------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 481 ---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
..-++|+++.+|..+|++-.|.++++.|.++
T Consensus 196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1347888999999999999999999998776
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.80 E-value=0.0015 Score=41.61 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=29.8
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 358899999999999999999999999999864
No 233
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.017 Score=54.78 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=88.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-----------CCChHHHHHHHHH-HHHHHhcHHHHHhhc----cCHH
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-----------SFGDEEKKQAKAL-KVACNLNNAACKLKL----KDYK 465 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~nla~~~~k~----~~~~ 465 (562)
+..-|..+.+.++|+.|++...+...+--..- .....+.+..... --..++.+|.++.++ ..++
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 33456778888999999887765332211000 0000000000000 011233456655553 3689
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 466 ~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+|...|++.-+..|.++..+.-.|.|++.+++|++|...++.||.-++++++...++-.+.....+-
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999877888899999999999999999999999999999999999888887776555543
No 234
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0071 Score=58.92 Aligned_cols=68 Identities=24% Similarity=0.206 Sum_probs=59.4
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
|-.-|.-|++.++|..|+..|.+.|...-. |.-.|.+||-|.+.+|+|..|+.++.+|+.++|.+.-+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka 155 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKA 155 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 445688899999999999999999986533 46678899999999999999999999999999999533
No 235
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.74 E-value=0.0012 Score=42.81 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 484 ALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+|.++|.+|..+|+|++|++.|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566677777777777777777775443
No 236
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.72 E-value=0.054 Score=51.09 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=74.3
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC-------HHHHHHHHHHHHhcCC-
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLDS- 479 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------~~~A~~~~~~al~~~p- 479 (562)
.+-....+++|+..|.-|+-........ ...++.+++.+|.+|..+++ +..|+..|.++++...
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4555678999999999999765432211 12456668888999988888 4556666666665442
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 480 -----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+....+|.+|..+.++|++++|+.+|.+++..--.+
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 236899999999999999999999999999754333
No 237
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.00081 Score=65.63 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=57.6
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
|.-.+..|.++.|+++|..++.++|.+...|-.||.++++|++...|+.+|..|+.++|+...
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK 183 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence 344556788999999999999999999999999999999999999999999999999998754
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.67 E-value=0.0085 Score=56.82 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=64.0
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
..+++-|+..++.|+|.+|+..++.+....|.+ .++++-++.++++-++|++|+..+++-+.+.|+++++
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 337799999999999999999999999988754 7999999999999999999999999999999998753
No 239
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.67 E-value=0.0028 Score=38.91 Aligned_cols=32 Identities=44% Similarity=0.657 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
.+++++|.+|..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677777777777777777777777777665
No 240
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.66 E-value=0.0021 Score=65.72 Aligned_cols=64 Identities=31% Similarity=0.335 Sum_probs=60.5
Q ss_pred hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
-+-|...++-+.|+.|+..|.+||+++|+++-.+-+|+.+|++.++|..|+.++.+|++++|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 3667788899999999999999999999999999999999999999999999999999999986
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.60 E-value=0.015 Score=61.83 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
--+..+|..+..+|+.+.|+..|++|+..- ...+++...+++.+|.|++-+.+|++|..++.+.++.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 346778888999999999999999988421 23445667789999999999999999999999999853
Q ss_pred CCHH--HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhC
Q 008540 480 RNVK--ALYRRAQAYIQMADL-------DLAEFDIKKALEID 512 (562)
Q Consensus 480 ~~~k--a~~~~a~a~~~l~~~-------~~A~~~~~~al~l~ 512 (562)
++.+ ..|-.|.||..+++. ++|.+.|+++-.+-
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 3445 445789999999999 88888888887654
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.043 Score=49.78 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
...+.+..++..++++.|....+.++..-.+ ..++..+-.++|.+++.++.+++|+..++..-.-.-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~ 158 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA 158 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH
Confidence 4567888999999999999999998854221 1334445678999999999999999987765442211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
....-.+|.+++..|+-++|+..|++|+..++++
T Consensus 159 -~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 159 -AIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred -HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 2235578999999999999999999999998555
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.48 E-value=0.001 Score=42.53 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (562)
Q Consensus 421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (562)
+|++||++.|++... |+|+|.+|..+|++++|++
T Consensus 1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhcC
Confidence 488999999987765 9999999999999999863
No 244
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.022 Score=59.58 Aligned_cols=114 Identities=21% Similarity=0.170 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHH----HHHH-----HHHHHHhcHHHHHhhc
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKK----QAKA-----LKVACNLNNAACKLKL 461 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~---------~~~~~~----~~~~-----~~~~~~~nla~~~~k~ 461 (562)
..+...-|.+.+.++|++|+....+.+...|++... ..+..+ .++. ......+..|-|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 345555677778889999999988888887654322 001111 1111 0111125778999999
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
+..++|+.+++ -+++...+.+.-+|+.++++++|++|...|+...+.+-++.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 99999999988 55667788999999999999999999999999887765553
No 245
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.42 E-value=0.039 Score=56.82 Aligned_cols=106 Identities=19% Similarity=0.171 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008540 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (562)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~ 496 (562)
+-...|+.|+...+.+.. ++++...-..+.+.+.+.-..|.++|..+|+|+..|...|.-.+..+
T Consensus 89 rIv~lyr~at~rf~~D~~---------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVK---------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 345667777776665443 26666655566677999999999999999999999999999888887
Q ss_pred C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 497 D-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 497 ~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
. .+.|++.|.++|..+|+++.++.++=++..........++
T Consensus 154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr 195 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRR 195 (568)
T ss_pred cchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999999999888776555554444443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.14 Score=49.58 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH---------
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC--------- 471 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~--------- 471 (562)
....++..+...+++..|...|..++...+..... ..-+|.||+..|+.+.|...+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~~ 200 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQD 200 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence 35677889999999999999999999998876433 445666666666664443333
Q ss_pred -------------------------HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008540 472 -------------------------TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKT 524 (562)
Q Consensus 472 -------------------------~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~ 524 (562)
.+.+..+|++..+-+.+|..|...|+.++|.+.|-..++.|-. +..+++.|-.
T Consensus 201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 2333457999999999999999999999999999888876533 4456666655
Q ss_pred HHHHHH
Q 008540 525 LKEKMK 530 (562)
Q Consensus 525 l~~~~~ 530 (562)
+-..+.
T Consensus 281 ~f~~~g 286 (304)
T COG3118 281 LFEAFG 286 (304)
T ss_pred HHHhcC
Confidence 544444
No 247
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.30 E-value=0.014 Score=56.13 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=66.4
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~ 524 (562)
-++.|.-..+.|+.++|...+..||.++|.|+.++.+.|.....-++.-+|-.+|-+||.++|.|.++..+-.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34667777789999999999999999999999999999999999999999999999999999999887665443
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.23 E-value=0.14 Score=47.26 Aligned_cols=57 Identities=32% Similarity=0.429 Sum_probs=31.1
Q ss_pred HhhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
+...+++..|+..+.+++...+. ...++..++.++...++++.|+..+.+++...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 44455555555555555555555 4555555555555555555555555555555554
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.068 Score=49.77 Aligned_cols=114 Identities=19% Similarity=0.115 Sum_probs=83.6
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTK 473 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~ 473 (562)
+-+.+..+.+.+|+ |++.+..+|+++..+|+++....... .+..+-+..+|-.|-.- .++++||.+|+.
T Consensus 70 khDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 70 KHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred chhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 33455566665554 56678999999999999988765433 12233355667766554 899999999999
Q ss_pred HHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 474 VLDLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 474 al~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
+-+.-. .--|++...|.--..+++|.+|+..|+++....-+|.-.
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 976532 225788889998999999999999999998877776543
No 250
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.20 E-value=0.0058 Score=39.61 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
++.|+|.+|.++|+|++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3789999999999999999999996654
No 251
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.12 E-value=0.064 Score=58.90 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=88.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHH
Q 008540 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (562)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~ 486 (562)
-.....++|.+|+....+.++..|+.... ..--|..+.++|++++|....+..-..-+++-..+-
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a---------------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYA---------------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHH---------------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence 34566788999999999999888764422 334688899999999999555555455567778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
-+-.||..++++++|...|+++...+|+ .+....+=.+..+...+.++++
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999 6666666556666666555443
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.11 E-value=0.037 Score=44.32 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~ 533 (562)
.+..+++.++.+|++..+.|.+|.++...|++++|++.|-.+++.+++. ..++..+-.+-..+....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4567888999999999999999999999999999999999999998765 567676666655555433
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.10 E-value=0.0068 Score=38.06 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 47799999999999999999999999998874
No 254
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.096 Score=53.60 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHH---------------------------------H
Q 008540 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA---------------------------------C 457 (562)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~---------------------------------~ 457 (562)
...+.+.+...|+.+|+++|...-. ..++++-.|. .
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFt-----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFT-----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccch-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4678999999999999998864321 1112222222 2
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
-+++++++.|...|.+-|+..|.|..+|..-|..-..||+.+.|+..|+-|+..
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 345666777777777777777777777777676666777777777777666643
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.03 E-value=0.25 Score=48.77 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=90.7
Q ss_pred cCChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540 389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (562)
Q Consensus 389 ~~~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (562)
.++++.....+..+.+-|..+++++ +|..|....++|.++++.... .........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777788999999999999999 999999999999999855211 11122345677888899999999998887654
Q ss_pred HHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 468 EKLCTKVLD----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 468 ~~~~~~al~----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
.+ |..+++ -.|+.+-.++-.=.++.+.++.+.+.+.+.+++.--
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44 444433 346666666566666666788888988888888653
No 256
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.98 E-value=0.023 Score=58.10 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD-L--------DS---------RNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~-~--------~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
....++|++.++++++.|..++.++.+||+ . .| .....+|+.|..|+..|+.-.|.++|.+|
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 334468999999999999999999999995 1 11 23568999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 008540 509 LEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 509 l~l~p~~~~~~~~l~~l 525 (562)
....-.|+.+|..++.|
T Consensus 362 v~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHhcCcHHHHHHHHH
Confidence 99988998888887765
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.96 E-value=0.075 Score=49.10 Aligned_cols=65 Identities=37% Similarity=0.489 Sum_probs=60.3
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
.+.+++.++...+.+..|+..+..++...|.....++.++..+...+.++.|...+.+++..+|.
T Consensus 204 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 47788999999999999999999999999998888999999999888899999999999999997
No 258
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.92 E-value=0.085 Score=56.73 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=70.6
Q ss_pred HHhcHHHHHhhc--------cCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 450 CNLNNAACKLKL--------KDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 450 ~~~nla~~~~k~--------~~~~~A~~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
+|.-+|.||... .++..+.....+++.+ +|..+.+|.-+|..+...|++++|...|++|+.++| +..+.
T Consensus 378 a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~ 456 (517)
T PRK10153 378 AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNY 456 (517)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHH
Confidence 344455555443 2345666667776664 778889999999999999999999999999999999 46788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 520 LEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 520 ~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
..++++.....+.+++.. .|++.+.
T Consensus 457 ~~lG~~~~~~G~~~eA~~-~~~~A~~ 481 (517)
T PRK10153 457 VLLGKVYELKGDNRLAAD-AYSTAFN 481 (517)
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 888988888877766543 5555443
No 259
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.92 E-value=0.15 Score=59.36 Aligned_cols=101 Identities=21% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC---
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--- 479 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--- 479 (562)
...|..++..|+++.|...|.+++......... .....++.++|.+++.+|++++|...+.+++.+..
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555555566666666666655544322111 11233567889999999999999999999887521
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 480 -----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
...-.+..+|.++...|++++|...+.+++.+.
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 122345677889999999999999999988763
No 260
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.081 Score=55.55 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (562)
.+++-++|+.+..++|+..++ .++-++ ..+..-+|+.++++++|++|+..|+..++.+.+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~-----------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLD-----------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccc-----------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 588889999999999998887 222111 11244579999999999999999999998877665
Q ss_pred HHHHHHH
Q 008540 483 KALYRRA 489 (562)
Q Consensus 483 ka~~~~a 489 (562)
....+..
T Consensus 145 d~~~r~n 151 (652)
T KOG2376|consen 145 DEERRAN 151 (652)
T ss_pred HHHHHHH
Confidence 5554433
No 261
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.079 Score=50.91 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=66.6
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
....+..|+=..++..++|+.|..+.++.+.++|.++.-+--+|.+|.+++.+.-|++++...++.-|+++.+.
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 34445667888899999999999999999999999999999999999999999999999999999999987543
No 262
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.18 Score=48.02 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (562)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~ 492 (562)
.+++.|.-.|+..-+..+.++. +.+-+|.|++.+++|++|....+.+|..+++.+..+-++-.+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~---------------llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPL---------------LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChH---------------HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4577888888776654443332 3678999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHH-HHHHHhCCCCHHH
Q 008540 493 IQMADLDLAEFDI-KKALEIDPDNRDV 518 (562)
Q Consensus 493 ~~l~~~~~A~~~~-~~al~l~p~~~~~ 518 (562)
..+|.-.++.+.+ .+....+|+++-+
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9999887766655 4444557777533
No 263
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.79 E-value=0.015 Score=35.47 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.3
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+++++|.++..+++++.|+..++++++.+|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 47899999999999999999999999998863
No 264
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.74 E-value=0.016 Score=53.68 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=56.5
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
...+.++.+.|.+.|+++|++-|.+...|||+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445778999999999999999999999999999999999999999999999999999875
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.12 Score=48.56 Aligned_cols=128 Identities=15% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH----HhcC--C
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD--S 479 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~~~--p 479 (562)
+-...+..+.+.|+..|++++.+...+... .+...++...+..+.+++.|.+|-..+.+- ++.+ +
T Consensus 117 Aak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 333444556777777888777776654322 223334556677888888888877666553 3333 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
.-.|++.-.-..|+.+.+|..|..+++...++..-+ -...-+.+...+..+++.+...++++.
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 445677777777888889999999999877664322 122233344555555555555555554
No 266
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.051 Score=52.32 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH---------
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC--------- 471 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~--------- 471 (562)
.+--.|-+||...+|..|..+|++.-.+.|..... .+..|+..++.+.|..|+...
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY---------------rlY~AQSLY~A~i~ADALrV~~~~~D~~~L 110 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY---------------RLYQAQSLYKACIYADALRVAFLLLDNPAL 110 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH---------------HHHHHHHHHHhcccHHHHHHHHHhcCCHHH
Confidence 35568899999999999999999988877753221 112233333333333333222
Q ss_pred ---------------------HHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 472 ---------------------TKVLDLDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 472 ---------------------~~al~~~p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
+..++.-| +......+.|..+++-|+|+.|.+-|+.|++...-++-+.-.++.+.-+
T Consensus 111 ~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~ 190 (459)
T KOG4340|consen 111 HSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS 190 (459)
T ss_pred HHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Confidence 12222223 3456677888888888888888888888888887777777777766555
Q ss_pred HHHHHHHH
Q 008540 529 MKEYNKKE 536 (562)
Q Consensus 529 ~~~~~~~~ 536 (562)
.+++..+-
T Consensus 191 ~~qyasAL 198 (459)
T KOG4340|consen 191 SRQYASAL 198 (459)
T ss_pred hhhHHHHH
Confidence 55554433
No 267
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.61 E-value=0.11 Score=58.64 Aligned_cols=63 Identities=6% Similarity=-0.080 Sum_probs=55.5
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.+|..+..++.+.|+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 347777778889999999999999999999999889999999999999999999999887644
No 268
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.57 E-value=0.14 Score=57.86 Aligned_cols=143 Identities=8% Similarity=0.007 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh--hhcC------------CCChHHHHHHHHHH--------HHHHhcHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDT------------SFGDEEKKQAKALK--------VACNLNNAAC 457 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~--~~~~------------~~~~~~~~~~~~~~--------~~~~~nla~~ 457 (562)
..+......|.+.|++++|++.|++.++.- |+.. ...++-....+.+. ...|..+..+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 456677778888888888888888876531 1100 00011111122221 1246778888
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
+.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...++++++++|++......+..+..+..+.+++.
T Consensus 472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~- 548 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA- 548 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH-
Confidence 999999999999887642 334 45678888999999999999999999999999998777777777777776665544
Q ss_pred HHHHhhcc
Q 008540 538 KFYGNMFA 545 (562)
Q Consensus 538 ~~~~~~f~ 545 (562)
++++.|-.
T Consensus 549 ~v~~~m~~ 556 (697)
T PLN03081 549 KVVETLKR 556 (697)
T ss_pred HHHHHHHH
Confidence 35555543
No 269
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.50 E-value=0.11 Score=51.31 Aligned_cols=128 Identities=14% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHhcCCCC
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~ 481 (562)
....+..-+.+..+.|...|.+|++...... .+|...|...++ .++.+.|...++.+++.-|.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~---------------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTY---------------HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T---------------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCH---------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 3344555556668899999999974222111 236666777556 567777999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
...|..-..-+..+++.+.|+..|++++..-|... .++..+-....+..... .-.++++++...
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~ 136 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999998866655 34444444444444332 222344444443
No 270
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.49 E-value=0.31 Score=49.01 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=85.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
..-....+..+...|+++.|.+.-.++++..-+.. +.+=.-.++.+++..=++..++.+...
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~------------------L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR------------------LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh------------------HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 44445566677888999999999998887532110 111223457788888888889999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
|+++-.++.+|+.|++.+.|.+|...|+.|+++.|+.. ....++.+...+.+-..+
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEA 380 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHH
Confidence 99998899999999999999999999999998888754 345555555555544433
No 271
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.39 E-value=0.082 Score=55.37 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 400 GKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 400 ~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
-.+...+..|++ +|+..+|+.+|..|+-+.+.... -..++.+|.+..+.|.-.+|--.+..|+...
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence 345566666666 78999999999999988765332 2236789999999999999988888888877
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV---KLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~---~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
|.-..-+|-++.+|.++++|.....+|..|++.+|..... ++..-.|.+++.+..+++.+..+.|
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666669999999999999999999999999999876432 2233335555555555554444444
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.35 E-value=0.28 Score=44.83 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.-..+.+.|+.|++.|+++.|++.|.++.+.+... ..++.+++++-.+.+..++|..+..+..++-.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334568899999999999999999999988764321 23555677888888899999999999999866
Q ss_pred cCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 477 LDS--RNV----KALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 477 ~~p--~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+-. .++ +.....|.+++..++|..|-..|-.+.
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 432 222 233345777888899999988886654
No 273
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.31 E-value=0.31 Score=50.33 Aligned_cols=123 Identities=18% Similarity=0.258 Sum_probs=79.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--C-----HHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--D-----YKQA 467 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~-----~~~A 467 (562)
.+.......+.|..++..|+|.+|+..|+..|..++-....+.++..+++++...|.-.+-.+.+.+. . .+..
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 34444556678999999999999999999999999887766777888888887776655544433322 2 2233
Q ss_pred HHHHHHHH-----hcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 468 ~~~~~~al-----~~~p~~~ka~~~~a~-a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
.+.|+-+. ++.|.|...-+|.|+ ..+++++|-.|....++.|++.|..+.
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 34444442 334444333334443 456789999999999999999998753
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.29 E-value=0.15 Score=49.07 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
.+.+++.+.+..+..+++.-.|..|++.+.+.+|++.|++++.++|-+...+.-+-..|..+|+--.|++.|++.
T Consensus 265 ~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 265 PWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344567778888888888888999999999999999999999999999999999999999999987787777664
No 275
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.26 E-value=0.2 Score=51.89 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=85.2
Q ss_pred CChHHHHHHHhhhHHHH----HH--HHH---cCcHHHHHHHHHHHHHHhhhcCCCCh------H--HHHHHH--HHHHHH
Q 008540 390 MNTEEKIEAAGKKKEQG----NT--LFK---AGKYARASKRYEKAVKYIEYDTSFGD------E--EKKQAK--ALKVAC 450 (562)
Q Consensus 390 ~~~~e~~~~a~~~~~~G----~~--~~~---~g~~~~A~~~y~~al~~~~~~~~~~~------~--~~~~~~--~~~~~~ 450 (562)
-+.+.+++.|.+-.+.- .. ++. .....+|.+.|++|++.-+....... . +....+ ....-+
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~ 261 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA 261 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence 46666776665433322 22 222 23478889999999987654322110 0 111111 123334
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNR 516 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~p~~~ 516 (562)
...+|.|..++|+.++|++.++..++..|. +...++++..|++.++.|.++...+.+--++ -|...
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 567899999999999999999999987774 6789999999999999999999999886433 24443
No 276
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.24 E-value=0.33 Score=43.77 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=66.4
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKE 527 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~-~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~ 527 (562)
.+.+|.....+|++.+|..+|.+++. +--++...+.-++++.+.++++-.|...+++..+.+|.. ++-...+++...
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 56789999999999999999999987 345778899999999999999999999999999988763 344455555544
Q ss_pred HHHHH
Q 008540 528 KMKEY 532 (562)
Q Consensus 528 ~~~~~ 532 (562)
...+.
T Consensus 172 a~g~~ 176 (251)
T COG4700 172 AQGKY 176 (251)
T ss_pred hcCCc
Confidence 44433
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.09 E-value=0.23 Score=40.88 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=70.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH----HhhccCHHHHHHHHHHHHhcCCC
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
++..+|++|++-+|++..+..+..-..+...+ .+..+.-.++..+|.. -.|..-.-.|++.++++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 56789999999999999999998766544321 2222222333333321 12222355678888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
....+|.+|.-+-....|++|..-.+++|.+
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 8888888888777777788888888888765
No 278
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.07 E-value=0.041 Score=53.09 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=67.9
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
+...|..-...+....+.|+.++|...|..|+.+.|..+.. +..+|...-..++.-+|-++|-+|
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhee
Confidence 33444444556667788999999999999999999987654 666777776678888999999999
Q ss_pred HhcCCCCHHHHHHHHHHHH
Q 008540 475 LDLDSRNVKALYRRAQAYI 493 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~ 493 (562)
|.++|.|.+|+.+|++..-
T Consensus 177 LtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 177 LTISPGNSEALVNRARTTP 195 (472)
T ss_pred eeeCCCchHHHhhhhccch
Confidence 9999999999999886543
No 279
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.33 Score=51.54 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++-|-|.-+++.++|..+++.|...+..-|. ..|....++.||+.+.+++.|.+.+..|-+.+|.+.-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3447888999999999999999999987654 3788889999999999999999999999999999965544443
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.03 E-value=0.16 Score=59.12 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=79.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (562)
....|..++..|++..|...+.+++...+... ......+++++|.++...|++++|+..+.+++.....
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 34467888899999999999999998644211 1113334678999999999999999999999875321
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 481 -----~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
-..++.++|.++...|+++.|...+.+++.+
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1357788999999999999999999999886
No 281
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.03 E-value=0.49 Score=48.65 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+..-|.--..+++++.|...|++||.....+ +.+++..|-+-+|.++...|....++|+.+-|.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555666667889999999999999876443 344888999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
--+.||.--..-..||+..-|+..|++-++..|+.. ++.-+-+...+.++.+. .+..|.+.
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq-aW~sfI~fElRykeier-aR~IYerf 200 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ-AWLSFIKFELRYKEIER-ARSIYERF 200 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhhHHHH-HHHHHHHH
Confidence 889999988888899999999999999999999863 55555555555554432 34455543
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.99 E-value=0.21 Score=51.85 Aligned_cols=128 Identities=15% Similarity=0.100 Sum_probs=71.1
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCC----ChHHH---HHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSF----GDEEK---KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~----~~~~~---~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
...+..+.+.-++.-.+|+++.|++... .+|+. .+...+..++ .+.|...++.....+.....-..+...+.
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqA-vkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQA-VKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHH-HHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 4566889999999999999999876543 11110 1111111110 01111111111111111111111111122
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 008540 481 N--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 481 ~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
| +.+-+|+|.|..++|+.++|++.++..++..|. +..++..|-.+...++++.+.+
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 2 456678999999999999999999999998876 3467777666655555554433
No 283
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.98 E-value=0.15 Score=44.92 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=63.8
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSR----------------------NVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~----------------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
|......++...++..+.+++.+... ...++.+++.++...|++++|+..+++++.++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 44445567788888888888876421 13466688999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 513 PDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 513 p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|.+..+...+-.+....+...... +.|.++-..
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~-~~Y~~~~~~ 125 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEAL-RVYERYRRR 125 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHH-HHHHHHHHH
Confidence 999988888888877777665443 355444333
No 284
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=94.89 E-value=0.23 Score=41.37 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH----Hh
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD 476 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~ 476 (562)
++...|+..++.+++-.|+-+|++|+.+........+.+.+.+-.+.+....|+|..+..+|+-+-.+++++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999998776544455566666777777889999999999999999888655 55
Q ss_pred cCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540 477 LDSRNV----KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (562)
Q Consensus 477 ~~p~~~----ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~ 524 (562)
+-|.-+ .++. -.+|--..|+-+| ++-.|+ +.+.+.+..
T Consensus 83 LiPQCp~~~C~afi------~sLGCCk~ALl~F---~KRHPN-P~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTECEAFI------DSLGCCKKALLDF---MKRHPN-PEIARLVQH 124 (140)
T ss_pred hccCCCCcchHHHH------HhhhccHHHHHHH---HHhCCC-HHHHHHHHh
Confidence 555432 2322 1234444555444 445665 455555443
No 285
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.82 E-value=0.48 Score=55.49 Aligned_cols=58 Identities=7% Similarity=-0.151 Sum_probs=26.2
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
|+.+..+|.+.+++++|++.+.+..+.. +.+...|..+..+|.+.|++++|++.|++.
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3334444444444444444444444332 123344444455555555555555555444
No 286
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.79 E-value=0.24 Score=42.16 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=36.9
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.+.+.+|..|+++++|+.++.+++..|+.+|+|.+|.--+-.+
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567899999999999999999999999999998886544433
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.77 E-value=0.47 Score=55.53 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=37.5
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.|+.+-.+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|+..|++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34455556666666666666666666554 334555666666666666666666666666543
No 288
>PLN03077 Protein ECB2; Provisional
Probab=94.69 E-value=0.4 Score=55.56 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=95.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHH--hhhcCCC------------ChHHHHHHHHH--------HHHHHhcHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF------------GDEEKKQAKAL--------KVACNLNNAA 456 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~--~~~~~~~------------~~~~~~~~~~~--------~~~~~~nla~ 456 (562)
...+......|.+.|+.++|+..|++..+. .|+.... .++-....+.+ ....|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 345777888889999999999999987763 2221111 01111112222 1235777888
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
++.+.|++++|.+.+++. .+.|+ ...|-.+-.++..-++.+.|....+++++++|++......|..+.....++++..
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 888889999998888775 34454 4556666667777888888888888999999999888888887777766665443
Q ss_pred HHHHHhh
Q 008540 537 AKFYGNM 543 (562)
Q Consensus 537 ~~~~~~~ 543 (562)
+ ..+.|
T Consensus 712 ~-vr~~M 717 (857)
T PLN03077 712 R-VRKTM 717 (857)
T ss_pred H-HHHHH
Confidence 2 33444
No 289
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.67 E-value=0.15 Score=39.02 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+....++|..+|.+.+.++|+..+++|++..++.. .+-.++-.++.+|...|+|.+++++..+-++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999998776422 1333466788888899999998887766554
Q ss_pred c
Q 008540 477 L 477 (562)
Q Consensus 477 ~ 477 (562)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 3
No 290
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=1 Score=42.59 Aligned_cols=102 Identities=18% Similarity=0.091 Sum_probs=69.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC---
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--- 478 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--- 478 (562)
+-.-++.|-..++|++|..+..+|.+..+++.+.+ ...+.|-..+....++..|.++...+++|..+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33444555557889999999999998877766542 133445555666667888889999999887753
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 479 --p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
|+..-.-..+|-=.+..-+.++|+..|++++.+-
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVV 140 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3333333344444556667889999999988763
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.46 E-value=0.67 Score=47.22 Aligned_cols=114 Identities=19% Similarity=0.100 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCCC------------------hHHHHHHHHHHHHHHhcHHHHHhhc
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL 461 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~k~ 461 (562)
...+.+..++.+|+...|+...+..+. .+....... .............+++-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345566777777788888888777776 332221000 0012233445667777777777777
Q ss_pred ------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008540 462 ------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPD 514 (562)
Q Consensus 462 ------~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~-----------------~~A~~~~~~al~l~p~ 514 (562)
+.+++++..|.++++++|++.++|+..|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 8899999999999999999999999999888776332 2477777777777776
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.35 E-value=0.063 Score=35.57 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=18.1
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
+++|+|.+|..+|+|++|+..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566777777777777777777666654
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.32 E-value=0.34 Score=47.26 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+......+..+.++.-++..+...++++.++...++.+..+|-+.++|.++-.+|+..|+...|+..|++.-++
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999999999999999999999999999988764
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=1.8 Score=39.50 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH------HHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 405 QGNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 405 ~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
-|-.|++.. +...|-..|.++++.............+.+.. +-.-..+.+|..+...+++++|+..++.+|
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555544 45588999999998876443322222222221 122234567888889999999999999999
Q ss_pred hcCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 476 DLDS-RNVK--ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 476 ~~~p-~~~k--a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
..-. .+.+ +-.|+|++.+.++.+++|+..+...- +++-.....++ +.+.....+.. ..+..|++....+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~-~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQ-EARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchH-HHHHHHHHHHHcc
Confidence 6533 3445 44689999999999999999887543 23323333333 33433333333 3445666655554
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.98 Score=44.55 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC------------hHH-HHHHHH----------HHHHHHhcHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------DEE-KKQAKA----------LKVACNLNNAA 456 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~------------~~~-~~~~~~----------~~~~~~~nla~ 456 (562)
++....+..++.+|++.+|...+.+.++-.|.+--.. .+. ...+.. ...-++--+|-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 4555667788899999999999999998877643110 000 000000 01112223455
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (562)
|....|-|.+|.+..+++|++++.+.-|...++-++...+++.++.++..+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666666666666666666666666666666666666666554
No 296
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.88 E-value=0.5 Score=50.41 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 008540 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRA 489 (562)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a 489 (562)
+...|.+.........|+..-+ ++..|..+...|+.++|++.+++++...... .-++|.+|
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lf---------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~ 312 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALF---------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA 312 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH
Confidence 3444555555555555543322 5678999999999999999999998643322 34788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 490 ~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
-||..+.+|++|..+|.+..+.+.-.+.....+
T Consensus 313 w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 313 WCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999998765555443333
No 297
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.66 E-value=0.94 Score=46.49 Aligned_cols=134 Identities=10% Similarity=0.127 Sum_probs=89.1
Q ss_pred HHHHHHhhhHHHHHHHHHcCc-HHHHHHHHHHHHHHhhhcCCCCh-------------------HH--------------
Q 008540 394 EKIEAAGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSFGD-------------------EE-------------- 439 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~~~-------------------~~-------------- 439 (562)
++...+..+..-+..+++.|. =+.|++..+.+++.-+.+..... .+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 456677778888888888887 56677777766665443210000 00
Q ss_pred HHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q 008540 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---- 515 (562)
Q Consensus 440 ~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---- 515 (562)
...+++.-+.-++.=|.-.+..|+|.+|.-++.-+.+.+| ++.+|.-+|.|++...+|++|..+|.. +-|++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~d 529 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRD 529 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHH
Confidence 0000111111123345567789999999999999999999 899999999999999999999999865 44433
Q ss_pred HHHHHHHHHHHHHHHH
Q 008540 516 RDVKLEYKTLKEKMKE 531 (562)
Q Consensus 516 ~~~~~~l~~l~~~~~~ 531 (562)
..+.+.+..|++.+.+
T Consensus 530 skvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 530 SKVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 2345556666555443
No 298
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.65 E-value=0.41 Score=38.64 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=42.4
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
...+.++|..|++.+.+..+.......... ......+.+|+|.++...|++++|+..+++++.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356789999999999999987655433210 1122233556777777777777777777777665
No 299
>PRK10941 hypothetical protein; Provisional
Probab=93.63 E-value=0.44 Score=46.55 Aligned_cols=78 Identities=12% Similarity=-0.053 Sum_probs=66.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
.-+.+.=..+.+.++|..|+++-+..+.+.|.++.. +..+|.+|.+++++..|+.+++.-++..|
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 334555678889999999999999999999987744 56799999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAY 492 (562)
Q Consensus 480 ~~~ka~~~~a~a~ 492 (562)
+.+.+-.-+.+..
T Consensus 247 ~dp~a~~ik~ql~ 259 (269)
T PRK10941 247 EDPISEMIRAQIH 259 (269)
T ss_pred CchhHHHHHHHHH
Confidence 9988776655443
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.62 E-value=2 Score=42.32 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhc----CC---C
Q 008540 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R 480 (562)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~----~p---~ 480 (562)
..++|+++.|..+|.|+-.+.....+ .........++|.|...++.+ +++.|+...++++++ .. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 45789999999999999988742111 112345556889999999999 999999999999887 21 1
Q ss_pred -------CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 008540 481 -------NVKALYRRAQAYIQMADLDL---AEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 481 -------~~ka~~~~a~a~~~l~~~~~---A~~~~~~al~l~p~~~~~~ 519 (562)
..+.+..++.+|+..+.++. |...++.+-.-.|+.+.+.
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 14577789999999988764 4444444545567766555
No 301
>PLN03077 Protein ECB2; Provisional
Probab=93.51 E-value=0.63 Score=53.93 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=52.3
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|..+-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 445545566788999999999999999999999999999999999999999999887754
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.51 E-value=0.17 Score=33.37 Aligned_cols=30 Identities=33% Similarity=0.268 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357899999999999999999999999875
No 303
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.50 E-value=1 Score=43.04 Aligned_cols=91 Identities=16% Similarity=0.098 Sum_probs=70.6
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
....+..-++...++-|+-+.|..+++.+-+ ++ ..+.-.+-+.+..|...++|-+|...|.+.+..||.++.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 3445566789999999999999999996543 22 24456677788888888999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008540 520 LEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 520 ~~l~~l~~~~~~~~~~~ 536 (562)
..-+.|...+++...+-
T Consensus 290 NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDAL 306 (366)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77777776666655443
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.31 E-value=4 Score=36.21 Aligned_cols=114 Identities=13% Similarity=0.035 Sum_probs=80.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+.+......+.++.+.+...+...--+-|..... -.--|..+++.++|.+|+..++.+.+-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34566777778888888888888776555454544332 345688899999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.|.++-+---++.|+..+++.+ =+.+-..+++-.+ ++.+....+.+..+
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS-WRRYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 8988877778899999999864 1222334444443 56666666665443
No 305
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.22 E-value=0.91 Score=52.66 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=64.0
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..+|...|...+++++-++|...+.+||+.-|. +++..-.-|+.-++.|+-+.++..|+-.+.-+|.-.++|.-|-..
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence 445777788888888888888888888888886 777777788888888888888888888888888877777776554
Q ss_pred HHH
Q 008540 526 KEK 528 (562)
Q Consensus 526 ~~~ 528 (562)
..+
T Consensus 1644 eik 1646 (1710)
T KOG1070|consen 1644 EIK 1646 (1710)
T ss_pred HHc
Confidence 433
No 306
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.11 E-value=1.6 Score=50.72 Aligned_cols=83 Identities=17% Similarity=0.144 Sum_probs=67.4
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLK 526 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~ 526 (562)
++|.-|+-.|.+-+.+++|.+.++..++.--+..+.|...|..++...+-++|...+++||+.-|. +.++....+.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 345667788888999999999999998876678899999999999999999999999999999998 555655555554
Q ss_pred HHHHH
Q 008540 527 EKMKE 531 (562)
Q Consensus 527 ~~~~~ 531 (562)
-+...
T Consensus 1611 Fk~GD 1615 (1710)
T KOG1070|consen 1611 FKYGD 1615 (1710)
T ss_pred hhcCC
Confidence 44433
No 307
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.11 E-value=0.087 Score=54.07 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=72.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCC-Ch-HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSF-GD-EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~-~~~~~~~~-~~-~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+.+.|..+|+.+.|..+..+|.+|++ .+...... .. ........-...+.+|.+..|+..|+...|.+++.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 44557889999999999999999999996 33221100 00 00011111233347899999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHc
Q 008540 476 DLDSRNVKALYRRAQAYIQM 495 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l 495 (562)
..-..|+..|.|+|.|....
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 98889999999999998764
No 308
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.89 E-value=0.4 Score=38.65 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~---------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
-.++.++|..|++.+.+.+..... ..-++.++|.++...|++++|+..++.|+++.-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456889999999988888765421 146788999999999999999999999998743
No 309
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.72 E-value=1.4 Score=43.64 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=76.1
Q ss_pred hHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 402 KKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 402 ~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
+...|..-++ .++...|.+.|+.+++.++.+... ++.....+.++++.+.|...+++++..-+.
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~---------------~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF---------------WLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH---------------HHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 4455555555 677888999999999998875433 445556677899999999999999998665
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 481 NV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 481 ~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
.. ..|-+...-=...|+++...+..+++.++-|++..+...
T Consensus 103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 54 355555666667899999999999999998886554443
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.58 E-value=1.5 Score=38.96 Aligned_cols=83 Identities=17% Similarity=-0.005 Sum_probs=73.8
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
..+..+..+-++.++.+++...+..+--+.|+++..-.--|..|...|+|.+|+..|+.+..-.|..+-++.++..|...
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34556777778889999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred HHH
Q 008540 529 MKE 531 (562)
Q Consensus 529 ~~~ 531 (562)
++.
T Consensus 91 ~~D 93 (160)
T PF09613_consen 91 LGD 93 (160)
T ss_pred cCC
Confidence 554
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.33 E-value=3.5 Score=37.57 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLEY 522 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--p~~~~~~~~l 522 (562)
..++..+|.-|.+.|+++.|++.|.++....... ...++++-++.+..+++..+..++.+|-.+- +.+.+.+..|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3457899999999999999999999998876432 6788899999999999999999999998763 3445555444
Q ss_pred HH
Q 008540 523 KT 524 (562)
Q Consensus 523 ~~ 524 (562)
..
T Consensus 116 k~ 117 (177)
T PF10602_consen 116 KV 117 (177)
T ss_pred HH
Confidence 43
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.26 E-value=4.5 Score=42.05 Aligned_cols=100 Identities=24% Similarity=0.236 Sum_probs=75.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH-
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL- 475 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al- 475 (562)
..+..+.-.|-....-+.|+.|...|..|.+.... .++.+.+..|+|..|++.++-+. +.+++
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld 428 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALD 428 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHH
Confidence 34455666777777788899999999999886542 34467778899999999776443 33333
Q ss_pred hcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 476 DLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 476 ~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
.+.|.| ..++|-.|.-.+..+++.+|...+.+.|+..
T Consensus 429 ~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 429 LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 344543 4578888999999999999999999999886
No 313
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=2.4 Score=47.00 Aligned_cols=124 Identities=19% Similarity=0.236 Sum_probs=87.8
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-------ccCHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQA 467 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~~A 467 (562)
++.......+.|-.+...|+|.+|+++|+.+|-..+-.-..+.++..+++++...+.-.+....+. ..+.+.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 366677788999999999999999999999998887665555666677777766664444333222 2234444
Q ss_pred --HHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 468 --EKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 468 --~~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
+..|=.-+.+.|-+ +-|+..--..++++++|..|....++.+++.|..+.+
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 23333334556654 4455555678899999999999999999999987544
No 314
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.08 E-value=0.18 Score=48.96 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~-~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
|...+.-..+.+.|.+.-..|.++|..+|.|+..|.. .+.-|...++++.|++.|.+++.++|+++.++.++-++.
T Consensus 110 w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence 5555666667889999999999999999999998876 566678889999999999999999999998888776553
No 315
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.03 E-value=0.72 Score=46.60 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-- 477 (562)
..+.+.|..|+..|+++.|++.|.++-+++.... -.+..+.|+-.+-.-+++|.+...+.++|...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK------------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 3467889999999999999999999877765422 13444677777778899999999999998876
Q ss_pred --C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 478 --D----SRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 478 --~----p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
. .-..+.....|.+++.+++|..|..+|-.+.
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 1235677788999999999999999987664
No 316
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.92 E-value=1.8 Score=49.60 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (562)
..-.++++..+.|++|+..|++.-.-.|...... +..-..-++ ++..|.-.-....+.+|+..+++.-. .|.-+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 552 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY----EAQFRLGIT-LLEKASEQGDPRDFTQALSEFSYLHG-GVGAP 552 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch----HHHHHhhHH-HHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc
Confidence 3455678888999999999999887776543221 111111111 11222222222468888888877544 46667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
--|.-.|.+|..+++|++-+++|..|++-.|+++++-..-..+--++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 779999999999999999999999999999999987766655544443
No 317
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.89 E-value=0.21 Score=46.56 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=53.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 407 ~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
...++.+++..|.+.|.+|+.+.|....- |+.++....|.|+++.|.+.|.++|+++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34677899999999999999998876655 7889999999999999999999999999965
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.83 E-value=3 Score=42.35 Aligned_cols=126 Identities=17% Similarity=0.090 Sum_probs=90.2
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+..+...+..+.+.|+++.|.....++....+..... ...+.+..|......|+..+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677888889999999999999999988765332211 112244556667777888888887777766
Q ss_pred c--C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCH
Q 008540 477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~--~--------------------------------p~~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~l~p~~~ 516 (562)
. . ....++++.+|.-...+ +.++++...|+.|.+++|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1 0 01146777788877777 888999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008540 517 DVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 517 ~~~~~l~~l~~~~~~~~ 533 (562)
.+...++.....+-...
T Consensus 293 k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESD 309 (352)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777776655554433
No 319
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.45 E-value=0.36 Score=31.57 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.+|.++|.+-+..++|++|+.+|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888999999999999998876
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.43 E-value=0.68 Score=31.38 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 485 LYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
.+.+|++|..+|+++.|++.++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36788899999999999999988884
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.01 E-value=2.6 Score=46.10 Aligned_cols=92 Identities=25% Similarity=0.212 Sum_probs=74.4
Q ss_pred hHHHHHHHHHcC-----cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHH
Q 008540 402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK 473 (562)
Q Consensus 402 ~~~~G~~~~~~g-----~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~ 473 (562)
....|..|++.. ++..|+..|.+|-+.-..+. .+++|.||..-. ++..|.+++..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a-----------------~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA-----------------QYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHcCCccccHHHHHHHHHH
Confidence 446788888743 78889999999987654332 568888888766 67899999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Q 008540 474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID 512 (562)
Q Consensus 474 al~~~p~~~ka~~~~a~a~~~l----~~~~~A~~~~~~al~l~ 512 (562)
|... .++.|++++|.||..- .+...|..++++|-+..
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 8865 6889999999999864 57899999999999887
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.76 E-value=5.4 Score=44.24 Aligned_cols=106 Identities=20% Similarity=0.122 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCC----hHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (562)
.+.--|......+..++|.+++.+|++...... ..+ .+.....+.++..++..++.+.+-+++|..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 344457788888888899999999999876643 111 123445566778888899999999999999999
Q ss_pred HHHHHHhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 470 LCTKVLDLDS---------RNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 470 ~~~~al~~~p---------~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
....+..... -.+..+|-.|..+...|+.+.|+..|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9988776532 247889999999999999999999998
No 323
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.65 E-value=0.87 Score=29.37 Aligned_cols=33 Identities=24% Similarity=0.128 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 008540 483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN 515 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~--~~~al~l~p~~ 515 (562)
+.++.+|..+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777788888888888888 44676777654
No 324
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.48 E-value=2.1 Score=43.95 Aligned_cols=102 Identities=22% Similarity=0.173 Sum_probs=74.9
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--------------
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-------------- 477 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-------------- 477 (562)
...|+++...|..++.....+.- -..-....+++..++.++.++..+|++..|.+.+++||-.
T Consensus 7 s~~Y~~~q~~F~~~v~~~Dp~~l---~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSHDPNAL---INLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHccCHHHH---HHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34577777777777764311100 0011222346777889999999999999999999998632
Q ss_pred C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Q 008540 478 D------------SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR 516 (562)
Q Consensus 478 ~------------p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-~~ 516 (562)
+ +.| ..|++|...++.+.|-+..|.++++-.+.+||. |+
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 1 122 458889999999999999999999999999999 65
No 325
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.36 E-value=1.4 Score=43.48 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=46.8
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDPDNR 516 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~p~~~ 516 (562)
....|.++.-.++++++.+...+.-..-... ..-|..-|.+|..-++|+.|++.|.+-+ +++.++.
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 4466777777889999988776654322211 2335567999999999999999997755 5566665
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.53 E-value=3.6 Score=42.17 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=56.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---------CCC------hHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---------SFG------DEEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---------~~~------~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
+..+.+.+..+..+|++..|....++||-.+.... ... +-...+.+.+... .+.......+.|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla-l~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA-LFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH-HHHHHHHHHhcCc
Confidence 45677888888888998888888888887655210 000 0112223333333 3355667789999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 008540 464 YKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~ 480 (562)
|..|++.|+-.+.+||.
T Consensus 119 ~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999997
No 327
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=89.49 E-value=2.1 Score=47.50 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=73.2
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
..++|.+|+..|.++++..|+..-|..-.|..+.++|++++|...++..-.+-+++......+..|...+.+..+.- ..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~-~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV-HL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH-HH
Confidence 46789999999999999999999999999999999999999998888777777888888888888888888776543 35
Q ss_pred HHhhcccc
Q 008540 540 YGNMFAKM 547 (562)
Q Consensus 540 ~~~~f~~~ 547 (562)
|.+..++.
T Consensus 100 Ye~~~~~~ 107 (932)
T KOG2053|consen 100 YERANQKY 107 (932)
T ss_pred HHHHHhhC
Confidence 65555443
No 328
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.45 E-value=3.5 Score=34.43 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=56.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
+-.+--....+...|+|++++..-.+||.++........++-+. -+.+-+++|.++.-+|+.++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl----WIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL----WIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34556677788899999999999999999988766554444332 3455679999999999999999999998764
No 329
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.33 E-value=2.4 Score=32.54 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
..|..+..++..+=+.|+|.+|+.+|..|++++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999998765
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.18 E-value=0.53 Score=27.75 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
.+++.+|.+|..+|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777776654
No 331
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=88.12 E-value=4.3 Score=31.45 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHHHHHHHHhcHHHHHhhc
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL 461 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~k~ 461 (562)
.+.|....++|-.+=..|+.++|+.+|+++++.+.... ....++++.++.++.+.-.|+..+-.++
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888889999999999999999986532 2244677778777777777776665544
No 332
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.09 E-value=2.9 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
+.|..+..++..+=+.|+|.+|+.+|++|++.+..-
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999999999999999987653
No 333
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.08 E-value=5 Score=41.72 Aligned_cols=100 Identities=23% Similarity=0.162 Sum_probs=79.3
Q ss_pred HHhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHH
Q 008540 398 AAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVL 475 (562)
Q Consensus 398 ~a~~~~~~G~~~~~-~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al 475 (562)
.|....+.|..+|. ..+++.|..+.++|..+...-+... ..+-.++.-+|.||.... .+..|....++++
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 46667778877775 8999999999999999877665542 223344667888888887 8999999999999
Q ss_pred hcCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 008540 476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDI 505 (562)
Q Consensus 476 ~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~ 505 (562)
++..++ .|.++.+|+.+.-..+|..|.+.+
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 987665 467788999999999999888764
No 334
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.07 E-value=2.9 Score=32.27 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=30.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
..|..+..+|..+=+.|+|.+|+.+|.+||+.+..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999998765
No 335
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.00 E-value=14 Score=39.90 Aligned_cols=124 Identities=15% Similarity=0.117 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+...|..|-..|+.+.|...|++|+...=... +-+..+|++-|..-++..+++.|+...++|+.. |.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v-----------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~ 456 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTV-----------EDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PT 456 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CC
Confidence 456777888888999999999999887522111 124566888898999999999999999888765 33
Q ss_pred C-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 481 N-------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 481 ~-------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
+ .+.|-..+.....+|-++.....|.+.++|---.+.+..+++...+...-.++.-
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 3 3344445555666778888888889999888888888888887765555554443
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.93 E-value=2.5 Score=40.86 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+.|.+||+.|+|+.|++.|+.+........ ...+...++..+..|+.++++.+..+..|-+.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREG---------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 35788888999999999999988865554322 2244555567788888888888888888876653
No 337
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.91 E-value=14 Score=39.45 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=67.1
Q ss_pred chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHH
Q 008540 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405 (562)
Q Consensus 326 ~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~ 405 (562)
+.-..+..++..|.++....+.++.-|.. .-.+..|...+.+
T Consensus 256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q 297 (665)
T KOG2422|consen 256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ 297 (665)
T ss_pred HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence 45566888888888888888777653321 1234455555555
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHh--hhcCCCChH-HHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-C
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYI--EYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-N 481 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~--~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-~ 481 (562)
|..-..++-.++|+-.+.+|+.-. +......-+ ..-..+.+...+| ..-....+.|.|.-|.++|...+.++|. +
T Consensus 298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~eD 376 (665)
T KOG2422|consen 298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPSED 376 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCcCC
Confidence 555555555555666666655421 110000000 0011222222223 2234455899999999999999999997 5
Q ss_pred H
Q 008540 482 V 482 (562)
Q Consensus 482 ~ 482 (562)
+
T Consensus 377 P 377 (665)
T KOG2422|consen 377 P 377 (665)
T ss_pred c
Confidence 3
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.41 E-value=5.2 Score=37.30 Aligned_cols=70 Identities=14% Similarity=0.069 Sum_probs=61.0
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
...++.+..++|+...+.-++..|.+.-....+-+.|.-.|+|++|...++-+-.++|++..-...++.+
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 3566888999999999999999999988888888999999999999999999999999986555555544
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.29 E-value=8.3 Score=38.93 Aligned_cols=87 Identities=9% Similarity=0.103 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HH-HHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM-KE-YNKKEAKFYG 541 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~-~~-~~~~~~~~~~ 541 (562)
.+..+..+++||+.+|++.+.+..+-.+..++.+-++..+-+++++..+|++..++..+-...+.. .. .-..-+..|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999988888776554431 11 1123345666
Q ss_pred hhccccCCC
Q 008540 542 NMFAKMTEP 550 (562)
Q Consensus 542 ~~f~~~~~~ 550 (562)
+.+..+...
T Consensus 127 ~~l~~L~~~ 135 (321)
T PF08424_consen 127 KCLRALSRR 135 (321)
T ss_pred HHHHHHHHh
Confidence 666555443
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.12 E-value=2.3 Score=46.83 Aligned_cols=114 Identities=15% Similarity=0.039 Sum_probs=74.7
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHH-------HhhhcCCCChHHHHHHHHH-HHHHHhcHHHHHhhccCHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVK-------YIEYDTSFGDEEKKQAKAL-KVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~-------~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~k~~~~~~ 466 (562)
++..-..+.+.+..+-.+++...|+++|+++-. ++..++.. -..-++.. -..+|..-|+..-..|+.+.
T Consensus 854 RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~---~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 854 RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ---IEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH---HHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 333344556666666667777777777776532 11111110 00111111 12456777888888899999
Q ss_pred HHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 467 AEKLCTKVLDL---------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 467 A~~~~~~al~~---------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|+..|..|-.. ...+.-|-|.+|+-|...|++.+|+..|.+|..+
T Consensus 931 Al~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 931 ALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99988887542 2456778999999999999999999999988654
No 341
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.63 E-value=3.7 Score=31.49 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=31.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+..|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999998765
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.49 E-value=15 Score=40.63 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=87.7
Q ss_pred cccCChHHHHHHHhhhHHHHHHHH-HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHH
Q 008540 387 SWDMNTEEKIEAAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465 (562)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~ 465 (562)
.+.+++. ..+....+.|..++ ...+++.|..+.++|+.+... ... .+++-.+.+-++.++.+.+...
T Consensus 50 ~~~l~p~---~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 50 QFKLSPR---QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred cCCCCHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH
Confidence 3445543 34666778888888 588999999999999998876 222 2344455556688888887777
Q ss_pred HHHHHHHHHHhcCCC----CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 008540 466 QAEKLCTKVLDLDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLEYK 523 (562)
Q Consensus 466 ~A~~~~~~al~~~p~----~~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~--p~~~~~~~~l~ 523 (562)
|+..|+++++...+ .+...|++-++.+. .+++..|++.++....+. ..++.+.-.+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~ 182 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLAS 182 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 99999999987655 46666666544333 369999999999998876 45655544433
No 343
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.37 E-value=3.8 Score=30.75 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=30.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+.|..+..+|..+=+.|+|+.|+.+|.+|+..+-.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999998754
No 344
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=86.28 E-value=5.1 Score=30.73 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
+..|..+..+|...=+.|+|.+|+.+|..+++.+-..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~ 39 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKG 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999999999987653
No 345
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.19 E-value=15 Score=37.43 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
-+...|..+..+++++.|+.+.+-.--+++|+..|+..++-..++.+.+.+|. +++...+..+
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a 305 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA 305 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999875 4566555443
No 346
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.10 E-value=4.5 Score=30.98 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
++.|..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999998754
No 347
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.06 E-value=4.8 Score=37.93 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV-KALYRRAQA 491 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~-ka~~~~a~a 491 (562)
+.+-+|..+.++|++++|+..+.+++.....+. ..+.++|+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 466799999999999999999999998643332 366666653
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=86.00 E-value=16 Score=36.04 Aligned_cols=105 Identities=24% Similarity=0.085 Sum_probs=74.5
Q ss_pred hhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----c--CHHHHHH
Q 008540 401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK 469 (562)
Q Consensus 401 ~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~A~~ 469 (562)
.....|..++. ..++.+|...|.+|.+.-.... ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 44557777766 4589999999999997643221 12244666666553 1 3347999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
.+.++-... +..+.+++|.+|.. ..++.+|..+|++|-+... ......+.
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 999988765 88999999988866 3489999999999998875 44444444
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.98 E-value=5.1 Score=40.91 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (562)
.+..||+.+++.+.|+....+.+.++|.+..-..-.+.|.+++.++.++.+.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999854444445567777777766554
No 350
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.65 E-value=20 Score=35.40 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=67.4
Q ss_pred HHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC
Q 008540 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------N--VKALYRRAQAYIQMADLDLAEFDIKKAL--EIDP 513 (562)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~--~ka~~~~a~a~~~l~~~~~A~~~~~~al--~l~p 513 (562)
.+....+..-+|..|-+.++|..|.+.+.- +..+.. + ...+.++|++|+..++-.+|..+..++- ..+.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 345566778899999999999998876643 333321 1 2345689999999999999999999874 3466
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 008540 514 DNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 514 ~~~~~~~~l~~l~~~~~~~~~ 534 (562)
.|....-+++.|+.+.-.++.
T Consensus 178 ~Ne~Lqie~kvc~ARvlD~kr 198 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLDYKR 198 (399)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 888899999888887765544
No 351
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.57 E-value=2.9 Score=40.36 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=60.9
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
=+.+.+.+++..|.+.-.+.+.+.|.++.. ...+|.+|.+++.+.-|+.+++..++..|+.+.+-
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 356777899999999999999999988754 56899999999999999999999999999988776
Q ss_pred HHHHHH
Q 008540 486 YRRAQA 491 (562)
Q Consensus 486 ~~~a~a 491 (562)
.-++..
T Consensus 253 ~ir~~l 258 (269)
T COG2912 253 MIRAQL 258 (269)
T ss_pred HHHHHH
Confidence 655543
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.10 E-value=9.2 Score=33.49 Aligned_cols=71 Identities=13% Similarity=-0.052 Sum_probs=36.1
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
+-+...+.+++.......--+.|++...-.--|..|...|+|.+|+..|+...+-.+..+-.+.++..|..
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 33335555555555554444555555555555555555555555555555554444444444444444433
No 353
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=9.9 Score=37.22 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=45.4
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
.+.-....+++.+|...+..++..+|.|..+..-++.||...|+.+.|...|.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~ 192 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA 192 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence 34445578999999999999999999999999999999999999987665553
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.13 E-value=16 Score=39.91 Aligned_cols=114 Identities=18% Similarity=0.034 Sum_probs=79.4
Q ss_pred HhhhHHHHHHHHH-----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-----CHHHHH
Q 008540 399 AGKKKEQGNTLFK-----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-----DYKQAE 468 (562)
Q Consensus 399 a~~~~~~G~~~~~-----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-----~~~~A~ 468 (562)
+......|..++. .++.+.|+.+|+.|..-+-. ........+.+.+|.||++.. ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 3445556666664 35899999999999872000 000001223678999999843 788899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 469 KLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
..+.++-.. .|+.+.|++|.+|..-. ++..|..+|..|.+. .+..+...+..|.
T Consensus 314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y 370 (552)
T KOG1550|consen 314 KLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCY 370 (552)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 999998876 57889999999999877 678999999998754 3444555555553
No 355
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=84.12 E-value=7.5 Score=29.65 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
+.+..+...|...=+.|+|++|+.+|..|++.+-..
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~ 39 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456677788888889999999999999999987653
No 356
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=83.82 E-value=17 Score=30.05 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~a~a~~~l~~-----------~~~A~~~~~~al~l~p~~~~~~ 519 (562)
+|.-++..|++-+|++..+..+...+++.. .+...|.++..+.. +-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 577888999999999999999998877654 44456777766643 3478999999999999984443
Q ss_pred HHHH
Q 008540 520 LEYK 523 (562)
Q Consensus 520 ~~l~ 523 (562)
-+++
T Consensus 82 ~~la 85 (111)
T PF04781_consen 82 FELA 85 (111)
T ss_pred HHHH
Confidence 3333
No 357
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.21 E-value=18 Score=31.79 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+.+.........+...+.......--+-|..... -.--+..++..|+|.+|++.++.+.+-.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 344445555555777777766665444444544433 33467889999999999999999999888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..+-+---++.|+..+|+.+ =..+-..++.-+ .++++..+.+.+
T Consensus 76 ~~p~~kAL~A~CL~al~Dp~-Wr~~A~~~le~~-~~~~a~~Lv~al 119 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDAE-WHVHADEVLARD-ADADAVALVRAL 119 (153)
T ss_pred CchHHHHHHHHHHHhcCChH-HHHHHHHHHHhC-CCHhHHHHHHHH
Confidence 87877778899999999864 112223334333 344455555544
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.13 E-value=43 Score=34.34 Aligned_cols=97 Identities=15% Similarity=0.072 Sum_probs=74.4
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQ---MADLDLAEFDIKKAL-EIDPDNRDVKLE 521 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~----~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al-~l~p~~~~~~~~ 521 (562)
...|+-.+|....+|+.-+...+..-.+ -++.....+..|.|+-+ .|+.++|+..+..++ ..++.+++..-.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3558888899999999999988877665 34567777888899999 999999999999954 556677899999
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHhhccc
Q 008540 522 YKTLKEKMKEY--------NKKEAKFYGNMFAK 546 (562)
Q Consensus 522 l~~l~~~~~~~--------~~~~~~~~~~~f~~ 546 (562)
++++.+.+-.. ..+.-.+|++-|..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 99887766432 33445677777654
No 359
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.11 E-value=12 Score=38.42 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH--------Hhc----CCCC
Q 008540 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV--------LDL----DSRN 481 (562)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a--------l~~----~p~~ 481 (562)
..++|+..|.+|.+..++..+ -.|+|.+..-.|.-.+....+.++ .+. .-.+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~Y~----------------GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDYYS----------------GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHHHHHcCCccccc----------------hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 489999999999998765433 236666666655422222111111 111 1233
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
...+-.++.|..-.+++++|+.++++++++.|.......-++.+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 44555778888999999999999999999999987666555544
No 360
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=83.09 E-value=2.8 Score=36.58 Aligned_cols=47 Identities=28% Similarity=0.254 Sum_probs=32.7
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 497 (562)
...+|...+..|+|..|++.++.++..+|+|..+...++.+|.+++.
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34566667777888888888888888888887777777777777664
No 361
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.05 E-value=18 Score=27.69 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCCCCHH
Q 008540 501 AEFDIKKALEIDPDNRD 517 (562)
Q Consensus 501 A~~~~~~al~l~p~~~~ 517 (562)
|++.|.+++.+.|+++.
T Consensus 32 aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 32 AIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHhCCChHH
Confidence 44445566666777654
No 362
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.04 E-value=4.2 Score=39.81 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
|+.+|.+|+.+.|.+-..|..+|..+...++.=.|+-+|-|++...-..+.++..|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765567788888777655
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.91 E-value=8.1 Score=40.15 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
..-...+..|+...|-+....+++..+.++.. ..-++..+..+|.|+.|.++..-+-..-....+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~ 358 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS 358 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch
Confidence 33445667889999999888899888877654 345688888999999998888777666556667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520 (562)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 520 (562)
+..-+-+.+.+++++++|...-...|.-+-+++++..
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~ 395 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLT 395 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhee
Confidence 7777788888999999998888777765555555443
No 364
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.82 E-value=2.3 Score=27.76 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
..+...|...+...+|.+|+..|.+|+.+...
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999987653
No 365
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.70 E-value=3.6 Score=42.47 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=63.6
Q ss_pred HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008540 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE 521 (562)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A~~~~~~al~l~p~--~~~~~~~ 521 (562)
.-.+++++..|-||+-+++|.+|++.+..+|..-......++.+..-|-. ....|+....+--++.+.|. +..+...
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~ 240 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ 240 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 34677789999999999999999999999986422111122222222222 23445666666667777885 4445555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcccc
Q 008540 522 YKT-LKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 522 l~~-l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
++. ...++.+-.+..-..|..+|...
T Consensus 241 lkeky~ek~~kmq~gd~~~f~elF~~a 267 (404)
T PF10255_consen 241 LKEKYGEKMEKMQRGDEEAFEELFSFA 267 (404)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhh
Confidence 443 33344444444567888888753
No 366
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.60 E-value=7.1 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+.+..+..+|...=..|+|++|+..|.+|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45677788888888999999999999999999876
No 367
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.34 E-value=6.2 Score=31.45 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 419 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+..+++++...|.+.. +.+.+|.+++..|++++|++.+-.++..++++
T Consensus 8 ~~al~~~~a~~P~D~~---------------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLD---------------ARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HH---------------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4556666766665433 26789999999999999999999999999876
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=9.8 Score=40.51 Aligned_cols=126 Identities=21% Similarity=0.150 Sum_probs=83.8
Q ss_pred HHHHHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--
Q 008540 403 KEQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (562)
Q Consensus 403 ~~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-- 477 (562)
.+.|+.+|+ ...|++|.+.|.-|+...+...... .-.-..+++..++.+|..+..+|+.+-|.....++|-.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~---lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLI---LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceee---eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 445555664 4568889888888887654322110 00001345666778899999999988877777776531
Q ss_pred -------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHHHH
Q 008540 478 -------------------DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NRD-VKLEYKTLKEKMKE 531 (562)
Q Consensus 478 -------------------~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-~~~-~~~~l~~l~~~~~~ 531 (562)
.|.| ..++||--+.+.+.|-+..|.++++..+.++|. |+- +...+.....+-++
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrare 393 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRARE 393 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHh
Confidence 2333 457778888889999999999999999999999 763 44444433333333
No 369
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.12 E-value=3.5 Score=40.37 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008540 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (562)
Q Consensus 418 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~ 494 (562)
|.++|.+|+.+.|..... |+.+|..+...++.-.|+-+|-+++........|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999988755 89999999999999999999999998776678888888888777
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.47 E-value=15 Score=35.53 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC--C----CHHHHHHHH
Q 008540 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--R----NVKALYRRA 489 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~----~~ka~~~~a 489 (562)
...+..+++|+..+..... ..+...+...+|.-|++.|+|++|+..++.++.... . ....+.++.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4556667777766554332 234445567899999999999999999999965422 1 245677889
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 008540 490 QAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 490 ~a~~~l~~~~~A~~~~~~a 508 (562)
.|+..+|+.+..+...-+.
T Consensus 226 ~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 9999999988877665443
No 371
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.40 E-value=11 Score=28.79 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.0
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+..|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345677788888899999999999999999998765
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.20 E-value=12 Score=28.89 Aligned_cols=59 Identities=17% Similarity=0.026 Sum_probs=44.1
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
..++-++..++.++|+....++|+..++.. .++=.+..||...|+|++++++-.+=+.+
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445578889999999999999877664 44556778899999999888776554443
No 373
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=81.02 E-value=11 Score=40.32 Aligned_cols=77 Identities=16% Similarity=0.023 Sum_probs=59.1
Q ss_pred HHHhcHHHHHhhccC-HHHHHHHHHHHHhcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 449 ACNLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRR------AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 449 ~~~~nla~~~~k~~~-~~~A~~~~~~al~~~p~~~ka~~~~------a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
.++.|++.+....+. +..+...+..+....|+|...+..+ ++.+..+++..+|...+.++..+.|.++.+...
T Consensus 102 ~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 102 PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 447888887777665 4455556666999999998877776 888888899999999999999999999665554
Q ss_pred HHHH
Q 008540 522 YKTL 525 (562)
Q Consensus 522 l~~l 525 (562)
+--.
T Consensus 182 ~~~~ 185 (620)
T COG3914 182 LMTA 185 (620)
T ss_pred HHHH
Confidence 4433
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.79 E-value=13 Score=35.90 Aligned_cols=95 Identities=16% Similarity=0.195 Sum_probs=62.3
Q ss_pred hccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI-------DPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-------~p~~~~~~~~l~~l~~~ 528 (562)
+..+.++|+..+.++|++.+.. .||+-..-++++++++|++-++.|++.|.. +-..+.+...+.-+...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 5668999999999999999764 689999999999999999988888877643 33333344444333221
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCC
Q 008540 529 MKEYNKKEAKFYGNMFAKMTEPKEAEPM 556 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 556 (562)
.+. .--..+|..-+..+.+.++..-|
T Consensus 119 ~~m--~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 119 KNM--DLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred hhh--HHHHHHHHHHHHHHHhhhcceee
Confidence 111 11234566555666555544433
No 375
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=80.44 E-value=5.7 Score=41.77 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l---~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
...+..|+.+|.+++..-|.+...|.++|.++++. |+--.|+.++..|++++|....+..-|.++...+.+..+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 34578899999999999999999999999999986 456689999999999999987777777776666665544
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.37 E-value=2 Score=25.24 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHhcHHHHHhhccCHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
+++++|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46799999999999999998875
No 377
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.05 E-value=16 Score=41.70 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (562)
....-|+.+|..+.|+.|.-.|...-. |..+|.....+|+|+.|....++|-...-
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktW 1252 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTW 1252 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 456789999999999999888864322 66788889999999999999888754310
Q ss_pred --------C----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 480 --------R----------------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 480 --------~----------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+ +..-+=.+-.-|...|-|++-+..++.+|-|+-.+-....+|+.+..+.+-.
T Consensus 1253 K~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHH
Confidence 0 0111223445567788899999999999999877777788888877666543
No 378
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.75 E-value=10 Score=33.03 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
.-......+|+.++..|+|.-|...+..++..+|+|.+++.....+...+....
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 446778899999999999999999999999999999999999988877776543
No 379
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.40 E-value=15 Score=37.42 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=71.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH---HhcCCCC
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV---LDLDSRN 481 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a---l~~~p~~ 481 (562)
-+..+|+.|+..++-...+.+-+..| |-.++..|....--+.++.-++++ -.+.|+|
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~eP--------------------HP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEP--------------------HPDIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCC--------------------ChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 34455555665555555555554443 335666666666555555555554 4578999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
....+-++.+-+.-|+|..|+..-+.+...+|... +..++..+.
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIe 372 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIE 372 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHH
Confidence 99999999999999999999999999999999864 445555553
No 380
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=79.17 E-value=12 Score=41.68 Aligned_cols=103 Identities=15% Similarity=0.049 Sum_probs=64.2
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhc-----CCCChHHHHH----HHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH----
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYD-----TSFGDEEKKQ----AKALKVACNLNNAACKLKLKDYKQAEKLCTKV---- 474 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~-----~~~~~~~~~~----~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a---- 474 (562)
...+.|..++|...|.+.-++.--+ ...+.+..+. -+-.+...|+|.|.-.-..++.+.|+++|+++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha 888 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHA 888 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence 3445666777777777665543211 1111111110 01113345788888888889999999999876
Q ss_pred ------HhcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 475 ------LDLDSR----------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 475 ------l~~~p~----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|.-+|. ..+.|-+.|+-+...|+.+.|+.+|..|-.
T Consensus 889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 222343 234555778888889999999999988864
No 381
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.10 E-value=6.3 Score=37.38 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=68.0
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC-HHHH-HHHHHHHHh-cC-CCCHHH
Q 008540 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQA-EKLCTKVLD-LD-SRNVKA 484 (562)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-~~~A-~~~~~~al~-~~-p~~~ka 484 (562)
+|-.|+|+.|+....-||+..-..+.... .....+.+.-..+-|....+.|. ++-. ...+..+.. .+ |+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~---R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFR---RTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcccc---CCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 34568899999999999987554432210 01112222223344555555554 1111 111222211 11 444555
Q ss_pred HHHH--HHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 485 LYRR--AQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 485 ~~~~--a~a~~---------~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
-+.+ |.+++ ..++...|+..|++|+.++|+- .++..+.++.++++.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence 5544 44442 3457889999999999999775 578888888777764
No 382
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.70 E-value=21 Score=38.25 Aligned_cols=72 Identities=22% Similarity=0.038 Sum_probs=60.5
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK-ALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~-al~l~p~~~~~~~~l~~l 525 (562)
++..+...+....+......++..+|++..++.++|.+....+....|...+.. +....|+|.++...+-.+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence 777788889998999999999999999999999999999998877666655554 999999998877777333
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=78.37 E-value=3.5 Score=42.57 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=47.6
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDL---------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~---------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
..-+..+|.-+|+|..|++..+-+ ++ -+.++..+|..|-||+.+++|.+|+..|...|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999986543 11 245688999999999999999999999998874
No 384
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.32 E-value=34 Score=33.04 Aligned_cols=106 Identities=15% Similarity=0.059 Sum_probs=78.7
Q ss_pred HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540 411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRA 489 (562)
Q Consensus 411 ~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~~a 489 (562)
+...-.+|++.-..+|++.|..... +..+-.|.-.++ +..+-+.+..++++-+|.|-+.|..|-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTV---------------W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr 119 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTV---------------WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR 119 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 3455678999999999988876654 333333333333 567778889999999999999999999
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 490 QAYIQMADLD-LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 490 ~a~~~l~~~~-~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
.+...+|+.. .-++..+.++..|..|--++..-.-+-+..+.
T Consensus 120 ~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 120 VIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 9999999888 88889999999888876666655555444444
No 385
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.95 E-value=5.3 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=24.3
Q ss_pred HhcHHHHHhhccCHHHHHHH--HHHHHhcCCCC
Q 008540 451 NLNNAACKLKLKDYKQAEKL--CTKVLDLDSRN 481 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~--~~~al~~~p~~ 481 (562)
+..+|.++..+|+|++|++. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 45679999999999999999 54888887764
No 386
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=77.35 E-value=7.4 Score=45.41 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=83.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+.+++..+..+.+.+++++|+..-.+|.-+.......+..+ ....|.|++...+..++...|+..+.+++.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 3456778888889999999999998888876655443332222 223378899999999999999999999876
Q ss_pred c--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 477 ~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
+ .|.-.-...+++..+..+++++.|+.+++.|++++
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4 24444555688888999999999999999999853
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.14 E-value=23 Score=35.27 Aligned_cols=75 Identities=12% Similarity=0.066 Sum_probs=58.1
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
-+|+|.+..+..=...++...+..+.- -..+.-++--+|..+.++|+.++|...|.+|+.+.++..+......++
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 469998888877788888877666653 224455667899999999999999999999999998876655554443
No 388
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.87 E-value=14 Score=37.61 Aligned_cols=67 Identities=24% Similarity=0.100 Sum_probs=54.6
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--S--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~--p--~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
+.+.+-.+|+..+.|+.|-....++.--+ . .....+|.+|++..-..+|..|.++|-.|+...|.+.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34445678888999999999888876322 2 3367888999999999999999999999999999854
No 389
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=76.68 E-value=23 Score=30.42 Aligned_cols=61 Identities=21% Similarity=0.153 Sum_probs=40.8
Q ss_pred HhcHHHHHhhccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 451 NLNNAACKLKLKD-YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 451 ~~nla~~~~k~~~-~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|.++|+-++-... -++--..++.++.-+..++..++.+|.||.++|+..+|.+.+++|-+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6677776655444 444444445555556678999999999999999999999999999764
No 390
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.70 E-value=16 Score=42.86 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=83.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+....+.|......+.+..|.+ ..+++.+..+- ...++.-...+|..+|..+.+++++++|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456667788888888888888877 66666665431 1223444567788999999999999999999998865
Q ss_pred cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 477 ~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+. |+...+|-+++...+...+...|...+.+|+.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 43 455788999999999999999999999999876
No 391
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.58 E-value=31 Score=34.01 Aligned_cols=80 Identities=24% Similarity=0.117 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
..|+..|.+|.... ...+..+++.+|.+ ..++.+|..+|.++-+... ..+.++++ +
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 36777777766554 23346788888866 4589999999999999866 89999999 6
Q ss_pred HHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 008540 492 YIQMA---------------DLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 492 ~~~l~---------------~~~~A~~~~~~al~l~p~~ 515 (562)
+..-| +...|..++.++..+.+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 7888999999888776655
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.62 E-value=4.9 Score=27.21 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=24.5
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+++|.+|+.+|+++.|....++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 358999999999999999999999953
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.11 E-value=1.6e+02 Score=33.56 Aligned_cols=109 Identities=17% Similarity=0.041 Sum_probs=79.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+...-..-.+-....+.+|.+|-....++...++...... ...+.....--+|.+....++++.|+..++.++.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334445666777778889999888888877766432110 1112222223457777789999999999999999
Q ss_pred cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 477 LDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 477 ~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.-|.+ .-++...|.++.-.|++++|+.....+.++
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 87765 557778999999999999999999999887
No 394
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.24 E-value=21 Score=34.41 Aligned_cols=86 Identities=19% Similarity=0.198 Sum_probs=69.5
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~ 538 (562)
+...-..|++....+|.++|.|-..|..|-.++..+ .++.+-++++...++-+|.|-.++..-+.+.+.+....-.|-.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 344457788889999999999988877666666665 4678889999999999999999999988888888765546777
Q ss_pred HHHhhcc
Q 008540 539 FYGNMFA 545 (562)
Q Consensus 539 ~~~~~f~ 545 (562)
+.++|+.
T Consensus 135 f~~~~l~ 141 (318)
T KOG0530|consen 135 FTKLMLD 141 (318)
T ss_pred HHHHHHh
Confidence 8888876
No 395
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=70.65 E-value=29 Score=37.69 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=73.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-C---CCh-HHHHHHH--------------------------
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-S---FGD-EEKKQAK-------------------------- 444 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-~---~~~-~~~~~~~-------------------------- 444 (562)
-+.+..+.+-|..-++..+++.|++..++|.-+-.... . .+. -+...-+
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35577788888888899999999999998885422100 0 000 0000000
Q ss_pred ---HH---HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 445 ---AL---KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 445 ---~~---~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
++ -...-.|.|..+-...-|++|.+.|++-+.+-+ .+ ...|......-+.-...+.|+..|++||+.-|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 11 111223444444444555555555555554432 22 22344455555555677888888888888777
Q ss_pred CC--HHHHHHHHHHHHHHH
Q 008540 514 DN--RDVKLEYKTLKEKMK 530 (562)
Q Consensus 514 ~~--~~~~~~l~~l~~~~~ 530 (562)
.. +.+..+++++.++..
T Consensus 582 p~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 43 123334455544443
No 396
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=69.80 E-value=49 Score=34.22 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=42.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHh--hccCHHHHHHHHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLKDYKQAEKLCTKVL 475 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--k~~~~~~A~~~~~~al 475 (562)
.+.....++..+|++++|..|.+.+...+..++.... ...+.+++.+|. -.-+|.+|.+.++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3456678888999999999999999998875332111 122334444443 3556667777666555
Q ss_pred h
Q 008540 476 D 476 (562)
Q Consensus 476 ~ 476 (562)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 397
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=69.60 E-value=17 Score=35.63 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEP 555 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 555 (562)
...+++..++.++...++++.+.+.+++.+.++|-+..++..+-........+.. ....|+++-+.+......+|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~-ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSA-AIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchH-HHHHHHHHHHHhhhhcCCCc
Confidence 4578999999999999999999999999999999998777776666555544433 34466666655544444444
No 398
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.62 E-value=19 Score=38.02 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAV 426 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al 426 (562)
.++..|...+++|+++.|..+|.++-
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 45555555555555555555555443
No 399
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.47 E-value=35 Score=34.36 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 469 KLCTKVLDLDSRNVKALYRRAQAYIQMAD------------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~------------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
..+++.++-+|.++.+|..+..-.-.+-. .+..+..|++||+.+|++..++..+-++..++-.. .+-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-EKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHH
Confidence 45788899999999999988876655543 56778899999999999977766665555554432 223
Q ss_pred HHHHHhhcccc
Q 008540 537 AKFYGNMFAKM 547 (562)
Q Consensus 537 ~~~~~~~f~~~ 547 (562)
.+.++++....
T Consensus 85 ~~~we~~l~~~ 95 (321)
T PF08424_consen 85 AKKWEELLFKN 95 (321)
T ss_pred HHHHHHHHHHC
Confidence 44555555543
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.21 E-value=29 Score=31.95 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.....++..++.+...| ++..+.+++.++..+|+.++|.....++..+.|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 45566777788888877 57889999999999999999999999999999944
No 401
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.10 E-value=13 Score=22.28 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 496 ~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
|+++.|...|++++...|.+..++..+...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 356677777777777777776666655543
No 402
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.02 E-value=76 Score=32.70 Aligned_cols=86 Identities=17% Similarity=0.116 Sum_probs=60.1
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY--- 532 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~--- 532 (562)
..++..+++-+.....+|..+|+..-+|+.|.-++.+.+. +..-++.+++++++||.|-.++..-+-+....+..
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 3344467777888888899999999999999888887653 67888889999999998866555555454444443
Q ss_pred HHHHHHHHHhh
Q 008540 533 NKKEAKFYGNM 543 (562)
Q Consensus 533 ~~~~~~~~~~~ 543 (562)
...+-.+.-+|
T Consensus 165 ~~~El~ftt~~ 175 (421)
T KOG0529|consen 165 EKEELEFTTKL 175 (421)
T ss_pred chhHHHHHHHH
Confidence 34444443333
No 403
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=67.74 E-value=50 Score=33.08 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=76.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
-.+.|..+...++|..|..+|-+|++=+..-.. ..+....++ |.-++-..+.+-+--.++-....+++++...
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~----~v~A~~sLK---YMlLcKIMln~~ddv~~lls~K~~l~y~g~~ 284 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----DVKALTSLK---YMLLCKIMLNLPDDVAALLSAKLALKYAGRD 284 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCC----cHHHHHHHH---HHHHHHHHhcCHHHHHHHHhhHHHHhccCcc
Confidence 345555555667888898888888764432221 122233333 3334444444444445666677788888888
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQ--MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 482 ~ka~~~~a~a~~~--l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
..|+-..|.++.. +.+|+.|+..|+.=+.-|| -++..+..+...+-
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNLL 332 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHHH
Confidence 9999999999876 5689999999988776554 46666666554443
No 404
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=67.16 E-value=23 Score=27.02 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhCCCC
Q 008540 500 LAEFDIKKALEIDPDN 515 (562)
Q Consensus 500 ~A~~~~~~al~l~p~~ 515 (562)
.|++.|.++++.+|+.
T Consensus 33 ~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 33 KAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHhccCCCH
Confidence 3444455555566553
No 405
>PF15469 Sec5: Exocyst complex component Sec5
Probab=66.07 E-value=28 Score=31.70 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
.+.++|+|+.|+..|.+|..++...
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 4457899999999999999987754
No 406
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.47 E-value=24 Score=32.67 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD----NRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~----~~~~~~~l~~l~~~~~~~ 532 (562)
+.+...+.+|.-|. ..+.++|+..|.++|++.+. |+++..-|..+...++..
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34556666665444 55566677777777666433 245555555554444433
No 407
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.41 E-value=25 Score=37.79 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID--------PDNRDVKLEYKTLKE 527 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~ 527 (562)
.+.+++++++.|.+... +.++..-|-.+|.+.+..+++..|.++|.+|..+. .+|.+....++.+.+
T Consensus 645 elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 34567888888877443 34566778889999999999999999999987542 345444444444433
Q ss_pred HH
Q 008540 528 KM 529 (562)
Q Consensus 528 ~~ 529 (562)
+.
T Consensus 720 ~~ 721 (794)
T KOG0276|consen 720 KQ 721 (794)
T ss_pred hh
Confidence 33
No 408
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.90 E-value=56 Score=34.84 Aligned_cols=65 Identities=25% Similarity=0.159 Sum_probs=54.7
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD---S----RNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~---p----~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~p~~ 515 (562)
++-+|.|+..+|+-..|..++..+++.. . --+-|+|.+|..|..++. +.+|++++.+|.....++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 5567999999999999999999988421 1 127899999999999999 999999999999876554
No 409
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.45 E-value=1.2e+02 Score=27.60 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH-hcCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL-DLDS 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al-~~~p 479 (562)
.....|....++|+-..|+..|..+-.-.+. +.. .+-.+.+.-|..+.-.+.|++...-.+..- .-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~----------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI----------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch----------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 4556778888899999999999876643221 111 122234445666777888988766554422 2234
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
-...|.=-+|.+-++-|+|..|..+|.....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455556678889999999999999998765
No 410
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.45 E-value=27 Score=34.33 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=30.2
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
-+..|..+...+...-+.++|.+|+..|..|++++-.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4566677777888888889999999999999997654
No 411
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.36 E-value=15 Score=38.21 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=49.6
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
-..+.++++|..|.....-.|.-+-..+..+---|-..-+++-+++|.-++++++.++|..
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 3455689999999999998888766666766666777778899999999999999998754
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.34 E-value=1.1e+02 Score=34.88 Aligned_cols=87 Identities=8% Similarity=-0.011 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
+..--+|.....+++++.|...-+.++..++..... .++.++++++.++.-+|++.+|..+...+.++.-
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~ 528 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMAR 528 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHH
Confidence 333345677788999999999999999999876543 3677889999999999999999999999988732
Q ss_pred ----CC--HHHHHHHHHHHHHcC
Q 008540 480 ----RN--VKALYRRAQAYIQMA 496 (562)
Q Consensus 480 ----~~--~ka~~~~a~a~~~l~ 496 (562)
-. .-+.+..+.++...|
T Consensus 529 ~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 529 QHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred HcccHHHHHHHHHHHHHHHHHhh
Confidence 21 345567788888899
No 413
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.32 E-value=22 Score=34.74 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
.+.+...+.+|+..|.+.+|++..++++.++|-+......|-.+...++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 46677889999999999999999999999999998888887776666654
No 414
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=63.27 E-value=27 Score=38.23 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=17.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
|++.+.+=.+|.++...|.-++|.+.|-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 5665666666766666666666666553
No 415
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=62.50 E-value=23 Score=34.02 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC------
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------ 481 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~------ 481 (562)
.++..++--.|+..|...+.--|.+-..--....- ...+|.....|+ .--....|.+++++||-.....
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~----lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~I 78 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAAC----LEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKI 78 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhh----HHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCccee
Confidence 34445555667777766655444332110000000 111122333333 2234566788888887653221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
--+.++++.+|+.+.+|+.|..+|.+|+.+.-++.--+.+ .++...+...+++++
T Consensus 79 G~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We-~rLet~L~~~~kkQ~ 133 (368)
T COG5091 79 GLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWE-DRLETKLNKKNKKQK 133 (368)
T ss_pred eeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHH-HHHHHHHhHhhHhhc
Confidence 2356799999999999999999999999986555332222 234444544444443
No 416
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.54 E-value=37 Score=38.04 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.++.++..|+.+|++|+|+.|...|-++|..+..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 3566889999999999999999999999987654
No 417
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=62 Score=33.31 Aligned_cols=101 Identities=18% Similarity=0.000 Sum_probs=71.3
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHHHHHHHHHHHhcCCCCHHHHHH-H
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYR-R 488 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~~-~ 488 (562)
+.-++.-+.+-..+++..|..... ++-+..+..+.. +|..=++.|+++|+.||.|..+|.. |
T Consensus 88 ~~~ld~eL~~~~~~L~~npksY~a---------------W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRR 152 (421)
T KOG0529|consen 88 QALLDEELKYVESALKVNPKSYGA---------------WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRR 152 (421)
T ss_pred HHhhHHHHHHHHHHHHhCchhHHH---------------HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHH
Confidence 335566667777777777765543 667777777665 5899999999999999988777654 4
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 489 AQAYIQMAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 489 a~a~~~l~~---~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
-.+-..... ..+-+++..+++.-++.|-.++..-..+..
T Consensus 153 fV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 153 FVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 443333444 667788889999888888776665554433
No 418
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=61.06 E-value=79 Score=33.07 Aligned_cols=99 Identities=16% Similarity=0.015 Sum_probs=69.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+..+|-.+-+++++++|...|.+..+-....+.. ++..++.++-..-+-+++.+.-.......-+..|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~----------lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL----------LKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH----------HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc
Confidence 4578889999999999999999988765544332 122334455444445555555555555555566777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
+...+-.|...++.++|++|++.+-.-..
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77788889999999999999988865543
No 419
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.61 E-value=74 Score=24.45 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhCCCCH
Q 008540 500 LAEFDIKKALEIDPDNR 516 (562)
Q Consensus 500 ~A~~~~~~al~l~p~~~ 516 (562)
+|++.|..+++.+|+..
T Consensus 31 ~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 31 EGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHhhCCCHH
Confidence 34445566666677553
No 420
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=60.38 E-value=51 Score=34.31 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------C--CChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------S--FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~----------~--~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (562)
....|...+..+++..|+.++++||+...... . ....+..........++ +|. +-..=+...++.
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~--~a~-fg~~le~a~Cl~ 110 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLY--LAI-FGHLLERAACLR 110 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhH--HHH-HHHHHHHHHHHH
Confidence 34667788888888899988888887643211 0 00000000000000000 000 001112334455
Q ss_pred HHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 470 LCTKVLDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 470 ~~~~al~~~p~~----------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
-|...+.-.|.. ...|..+=.||.+.|++.+|++.-...+--+|++.+++..+..-+
T Consensus 111 rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 111 RCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 555555444433 256778889999999999999999999999999999888887554
No 421
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=60.02 E-value=47 Score=35.39 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
-++++...|++.+..-|..+.+|---....++..+|+.-...|.++|.
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666653
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.92 E-value=69 Score=33.98 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=66.8
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+..+-..+-....++-..+.|+++|.+. .+--||+.+++||... .-++-...+++..+.+-++...-++|....++.+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 3334445556667888999999999985 5678999999999998 4466677788888888888888888877776655
Q ss_pred HHHHHHHHHHHhhccc
Q 008540 531 EYNKKEAKFYGNMFAK 546 (562)
Q Consensus 531 ~~~~~~~~~~~~~f~~ 546 (562)
... ...+|++....
T Consensus 147 ~sk--~a~~f~Ka~yr 160 (711)
T COG1747 147 KSK--AAEFFGKALYR 160 (711)
T ss_pred hhh--HHHHHHHHHHH
Confidence 433 33455555443
No 423
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.60 E-value=26 Score=26.07 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.8
Q ss_pred HHHHHHHHhCCC
Q 008540 503 FDIKKALEIDPD 514 (562)
Q Consensus 503 ~~~~~al~l~p~ 514 (562)
..|..+++..++
T Consensus 33 ~~l~~~~~~~~~ 44 (69)
T PF04212_consen 33 EYLMQALKSESN 44 (69)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHhccCCC
Confidence 334445555543
No 424
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=1.6e+02 Score=31.53 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=64.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
+...+..+.-.|+-+.|+..++.++. ...++++.-+++.+|.++.-+.+|.+|-.++...... .++
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de-sdW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE-SDW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh-hhh
Confidence 34555666666776677777776664 2345667777999999999999999999999988876 345
Q ss_pred HHHHH--HHHHHHHH--------cCCHHHHHHHHHHHHH
Q 008540 482 VKALY--RRAQAYIQ--------MADLDLAEFDIKKALE 510 (562)
Q Consensus 482 ~ka~~--~~a~a~~~--------l~~~~~A~~~~~~al~ 510 (562)
.+|+| ..|.||+. .++-+.|...++.+.+
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~ 374 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE 374 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence 56665 34555533 3455555555555443
No 425
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=56.78 E-value=49 Score=31.72 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|++|+.+.....+.+ +.++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4789999999999887633221 35677778899887755 8899999999888754
No 426
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.64 E-value=1e+02 Score=32.25 Aligned_cols=102 Identities=13% Similarity=-0.001 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--------------CHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--------------DYKQ 466 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--------------~~~~ 466 (562)
+.+..|..+|--++|+.|...|+.+.+-+..+... .....++--.|+|.+..+ -++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 56778999999999999999999988765543322 122223333344444433 2445
Q ss_pred HHHHHHHH----HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 467 AEKLCTKV----LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 467 A~~~~~~a----l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|...|.++ ........++.+..+.++..++.+.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 55556552 2222244677788888888999988888877777654
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.55 E-value=2.2e+02 Score=28.56 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
|+|+|..++|+..+|.+.++...+-.|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 556666666666666666665544433
No 428
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.21 E-value=1.7e+02 Score=31.18 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=71.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--ChHHHHH---------------HHHHHHHHHhcHHHH--
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--GDEEKKQ---------------AKALKVACNLNNAAC-- 457 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~--~~~~~~~---------------~~~~~~~~~~nla~~-- 457 (562)
+.+..-++.+.. +.+.+-..|...|.+|+...-..... -.+-|++ +..+...+-.+++.+
T Consensus 130 nDvv~~ReLa~~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~ 208 (711)
T COG1747 130 NDVVIGRELADK-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLM 208 (711)
T ss_pred hhHHHHHHHHHH-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHH
Confidence 334444555544 44588889999999998754331111 0011111 112222222333332
Q ss_pred ------HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHh
Q 008540 458 ------KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--------------------MADLDLAEFDIKKALEI 511 (562)
Q Consensus 458 ------~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~--------------------l~~~~~A~~~~~~al~l 511 (562)
|....+|.+|++...-.|++|..+.+|.-++-.-+.. -.+|-+|+.+|++.+.+
T Consensus 209 qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f 288 (711)
T COG1747 209 QDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHF 288 (711)
T ss_pred HHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhee
Confidence 3346689999999999999999988887666555544 45677788888887777
Q ss_pred CCCC
Q 008540 512 DPDN 515 (562)
Q Consensus 512 ~p~~ 515 (562)
+..|
T Consensus 289 ~eGn 292 (711)
T COG1747 289 DEGN 292 (711)
T ss_pred ccCc
Confidence 6554
No 429
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=55.88 E-value=26 Score=22.22 Aligned_cols=30 Identities=27% Similarity=0.134 Sum_probs=19.9
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHHh
Q 008540 482 VKALYRRA--QAYIQMA-----DLDLAEFDIKKALEI 511 (562)
Q Consensus 482 ~ka~~~~a--~a~~~l~-----~~~~A~~~~~~al~l 511 (562)
+.|.|++| .+|..-. ++++|..+|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35777788 5444433 467888888887664
No 430
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.36 E-value=24 Score=32.72 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (562)
...|. ||.+.+-.+|+..|.+++.+...+... ...++..||..|+++++++.|-
T Consensus 145 ~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~-----------n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 145 YALAT-YYTKRDPEKTIQLLLRALELSNPDDNF-----------NPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHhcchhhhh
Confidence 33443 555889999999999999998776444 2344778999999999999874
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.29 E-value=1.1e+02 Score=30.16 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (562)
.+.+|.+.+.+++.+|+..|.+.+..-- +. + +.....+....++++..|...|++..--+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~---s~--d--ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGV---SK--D--EKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCC---Ch--h--hhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4678899999999999999998886411 11 1 1112223334668999999999887644433
No 432
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=53.97 E-value=29 Score=21.45 Aligned_cols=29 Identities=38% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 008540 483 KALYRRAQAYIQM----ADLDLAEFDIKKALEI 511 (562)
Q Consensus 483 ka~~~~a~a~~~l----~~~~~A~~~~~~al~l 511 (562)
.+.+++|.+|..- .+..+|..+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4666777776542 3677777777777553
No 433
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.55 E-value=1.9e+02 Score=29.76 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh--ccCHHHHHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCT 472 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--~~~~~~A~~~~~ 472 (562)
....++..+|++.+|..|.+.|.+++...... +.. -....+.+++.+|.. .=+|++|...++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~-----~~~-----~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSA-----VNH-----TFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccCh-----hhh-----hHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34456778999999999999999998764321 111 112223344444433 456677777666
No 434
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=52.40 E-value=53 Score=25.39 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=42.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008540 491 AYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTEP 550 (562)
Q Consensus 491 a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~ 550 (562)
.+.++..++=|..++.--|.-.|+|..+...+.....++++. ++.|.+.|+.|...
T Consensus 4 LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l----~~~Ye~~yGPLt~~ 59 (78)
T PF12652_consen 4 LLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQL----KKEYEKRYGPLTNF 59 (78)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH----HHHHHHHhCCCcCC
Confidence 455666777889999999999999999999888776665554 45677777776443
No 435
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=52.21 E-value=50 Score=27.91 Aligned_cols=80 Identities=16% Similarity=0.038 Sum_probs=57.0
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHh
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR---------------NVKALYRRAQAYIQMADLDLAEFDIKKA----LEI 511 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~---------------~~ka~~~~a~a~~~l~~~~~A~~~~~~a----l~l 511 (562)
+.++|...++.+++-.++-+|++|+.+..+ ++-...|+|.-+..+|+-+-.+++++-| +.|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888889999999999999999875321 1335568999999999999999999655 556
Q ss_pred CCCCH-----HHHHHHHHHHHHHH
Q 008540 512 DPDNR-----DVKLEYKTLKEKMK 530 (562)
Q Consensus 512 ~p~~~-----~~~~~l~~l~~~~~ 530 (562)
-|.-+ .....|+-|+..+-
T Consensus 84 iPQCp~~~C~afi~sLGCCk~ALl 107 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKALL 107 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHHHH
Confidence 66532 33444554544443
No 436
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.90 E-value=2.5e+02 Score=32.79 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=67.6
Q ss_pred HHHHHHHHcCcHHHHHHHHH------HHHHHhhhcCCCChHHHH-HHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 404 EQGNTLFKAGKYARASKRYE------KAVKYIEYDTSFGDEEKK-QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~------~al~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.|+.....+-|++|...|+ +|++.+-.+...-+-..+ .-+.-...+|..+|.+++..+...+|++.|-+|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 34555556666777766664 344444332211000000 011123456889999999999999999999654
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+++..|...-.+..+.|.|++-+.++..|.+-
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34567888888889999999999999888764
No 437
>PF12854 PPR_1: PPR repeat
Probab=51.89 E-value=38 Score=21.17 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKK 507 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (562)
|.-.|-.+-.+|.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445666777788888888888877764
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.27 E-value=1.7e+02 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (562)
.++++.|...++++++..|.++|.+|-++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 35667777777777777777777766653
No 439
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=50.09 E-value=43 Score=20.32 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQ 494 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~ 494 (562)
.+..+..++..+|.|..++..|--++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 3566777778888877777766555443
No 440
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=49.91 E-value=69 Score=24.23 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCCC
Q 008540 501 AEFDIKKALEIDPD 514 (562)
Q Consensus 501 A~~~~~~al~l~p~ 514 (562)
|++.|.+++..+|+
T Consensus 32 a~e~l~~~~~~~~~ 45 (75)
T cd02656 32 ALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHhccCCC
Confidence 33444445555554
No 441
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=49.73 E-value=11 Score=37.75 Aligned_cols=78 Identities=13% Similarity=0.016 Sum_probs=55.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (562)
.+...++.+.+..|+..-..+++..+. ...+|+.++..++.+.++++|++++..+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s---------------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERS---------------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccChh---------------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 455666677777777666666652222 33448899999999999999999999999999998665
Q ss_pred HHHHHHHHHHcCC
Q 008540 485 LYRRAQAYIQMAD 497 (562)
Q Consensus 485 ~~~~a~a~~~l~~ 497 (562)
.-.+...-....+
T Consensus 346 ~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 346 EEELENVRQKKKQ 358 (372)
T ss_pred HHHHHHhhhHHHH
Confidence 5555444444433
No 442
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.39 E-value=1e+02 Score=29.92 Aligned_cols=105 Identities=14% Similarity=0.238 Sum_probs=63.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC--C
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--N 481 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~ 481 (562)
..|+.+|..++|..-.+..++.-.-+..+.. ++..++-.. +..+|.---+.|-.+++-.+-...|.++|.+... +
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edG--edD~kKGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDG--EDDQKKGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccC--chhhhccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 5788888888887665555554444433221 111111111 2222333445677777777777888888876532 2
Q ss_pred HH--HHHH--HHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 482 VK--ALYR--RAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 482 ~k--a~~~--~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
+- ...| -|+.|++-|+|++|-.+|-.|++.
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 22 2222 277899999999999999888875
No 443
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.13 E-value=1.7e+02 Score=38.78 Aligned_cols=100 Identities=13% Similarity=0.000 Sum_probs=71.4
Q ss_pred HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCCCH
Q 008540 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----AD----LDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l----~~----~~~A~~~~~~al~l~p~~~ 516 (562)
..+...+.-.|..+.+++++++|-..+..|++++..-.|+|+..|.-+..+ .. -..|+.+|-+|....-+.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~s- 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSS- 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccch-
Confidence 345555677799999999999999999999999999999999998766554 11 247888888887766333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 517 DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 517 ~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
.++..++++.-.+.-.+... ...++|++.
T Consensus 2888 kaRk~iakvLwLls~dda~~--~l~~~~~k~ 2916 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSFDDSLG--TLGDVFDKF 2916 (3550)
T ss_pred hhHHHHHHHHHHHHhccccc--hHHHHHHHh
Confidence 46777777765555433322 444555543
No 444
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=47.84 E-value=3.6e+02 Score=28.43 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHcCcHHHHH-----HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARAS-----KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~-----~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
..++.+..-.+.++ .+|- .+|++.+..+.. +....+.-+...+..+-.+.+. .+-..|++.|..||
T Consensus 269 VmkEW~~ae~qaKn-PKAekqalnqhFQ~~v~sLEe-------e~a~erqqlvetH~~RV~AmlN-drrR~Ale~ylaAL 339 (615)
T KOG3540|consen 269 VMKEWEEAETQAKN-PKAEKQALNQHFQKTVSSLEE-------EAARERQQLVETHEARVEAMLN-DRRRDALENYLAAL 339 (615)
T ss_pred HHHHHHHHHhcccC-chhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 34555555556666 3343 445555554432 2222222233334444333332 23467999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCH
Q 008540 476 DLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~p~~~ 516 (562)
+.+|..+.--+..-+.|.+.. +-.--+..|+.++..||...
T Consensus 340 qa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 340 QADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 999988765555555555443 33456788999999998764
No 445
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.45 E-value=34 Score=26.49 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhcC
Q 008540 464 YKQAEKLCTKVLDLD 478 (562)
Q Consensus 464 ~~~A~~~~~~al~~~ 478 (562)
|+.|....+++|..|
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 344444444444443
No 446
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=47.42 E-value=96 Score=36.10 Aligned_cols=65 Identities=22% Similarity=0.179 Sum_probs=49.5
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-------a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
|+-.|++|.++++|++-++++..|++..|+++. .-||+=.+..... ..|....--|+..-|.+..
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCccccc
Confidence 778899999999999999999999999998864 3344444444333 3566777778888887643
No 447
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=46.22 E-value=1.5e+02 Score=33.05 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=30.7
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
..++|.+|+...+..-.. ....+.|-..|.-|..+|+|+-|.+.|.++
T Consensus 744 ~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 345666666655433221 222345556788899999999988887655
No 448
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.92 E-value=2.1e+02 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.214 Sum_probs=34.0
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+++|+.+.|.+.+. .-++...|-++|.+.+..|+++-|.++|+++-
T Consensus 329 l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 46777777776442 23466788899999999999999999888764
No 449
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.54 E-value=29 Score=20.43 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=15.4
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666655443
No 450
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.46 E-value=3.1e+02 Score=26.99 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=70.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC--
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-- 481 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-- 481 (562)
+.+..++-..+|..|+..++++++.+..+....+ ......+++..+..-=-+++..+++|.+++...-+-.+. |..
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~-pEklP 117 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV-PEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC-cccCC
Confidence 3445566788999999999999998865432211 111222333332222235677899999998877665553 333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
+|.+--.-..|.+++++....+.-.. .-.+|+|..
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~-WL~~p~Nq~ 152 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASA-WLQDPSNQS 152 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-HHhCcccCC
Confidence 56666667778899998766655544 345787753
No 451
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.42 E-value=89 Score=32.07 Aligned_cols=47 Identities=17% Similarity=0.033 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK 507 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (562)
....-+|+..++.++..+|.|....+.+.+.|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44577889999999999999999999999999999999999988854
No 452
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.40 E-value=2.1e+02 Score=28.90 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHH-HHHHH-HHHhcHHHHHhhccCHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQA-KALKV-ACNLNNAACKLKLKDYKQAEKLCTK 473 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-~~~~~-~~~~nla~~~~k~~~~~~A~~~~~~ 473 (562)
.+......-+|-.|+...+++.|+--|++|...-........++.... +++.. ..-- +++..+..-.+
T Consensus 122 YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~----------N~~~~~ae~s~ 191 (449)
T COG3014 122 YEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNI----------NMERSRAEVSE 191 (449)
T ss_pred HHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----------chhHHHHHHHH
Confidence 344455566777888888888888888887765443222111111111 11100 0011 12222222222
Q ss_pred HHh---------c----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 474 VLD---------L----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 474 al~---------~----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+++ + +=.|+-+-|++|..+..-+++.++...+..++-+.|+-
T Consensus 192 ~i~n~Y~ny~~~yea~~~l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 192 ILNNTYSNYLDKYEAYQGLLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 221 1 12456677777777777777777777777777777664
No 453
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.71 E-value=1.8e+02 Score=30.34 Aligned_cols=112 Identities=14% Similarity=0.052 Sum_probs=70.0
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH------HHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY------KQAE 468 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~------~~A~ 468 (562)
-+-.+.-+.+.|..++++..|..|+-..-.|-+.+....+. -.+.... ...+.+.+-.||+++++. +.-+
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k---lLe~VDN-yallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK---LLELVDN-YALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH---HHHhhcc-hhhhhcchhheehhhcccccCChHHHHH
Confidence 34667788999999999999999999888887766543321 0111111 122234556788887753 2223
Q ss_pred HHHHHHHhcC-------------CCC-HHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 469 KLCTKVLDLD-------------SRN-VKALY-----RRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 469 ~~~~~al~~~-------------p~~-~ka~~-----~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
..|++.+... +.. .+|+| --|...++.|+-++|.++|+.|-.
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3344433321 111 23444 458889999999999999998853
No 454
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=3.5e+02 Score=27.37 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=54.8
Q ss_pred HHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
..++..+-..+...|+..++|.+|+.....++. +| +.-+..+..-.++|+.+.+..+|...+..|...
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 345666667889999999999999999888764 33 234677888899999999999999999888754
No 455
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.78 E-value=53 Score=27.80 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=33.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.+++-..-....+.|..+..+|++..|..+|-+|+.+++.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4555566778889999999999999999999999998874
No 456
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.61 E-value=2.2e+02 Score=28.74 Aligned_cols=131 Identities=15% Similarity=0.037 Sum_probs=81.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc---CCC-------------Ch--HHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYD---TSF-------------GD--EEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~---~~~-------------~~--~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
-.+.|..++..++|.+....+..|-...... ... .+ -+..-..-.+..+++.+|+-|+..++
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD 140 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLND 140 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcc
Confidence 3577888888888887776665544332211 000 00 00000111234456678999999999
Q ss_pred HHHHHHHHHHHHhcC------------------------CCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLD------------------------SRNV-----------KALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 464 ~~~A~~~~~~al~~~------------------------p~~~-----------ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
++.|+--+++|+... |+-- ..|.+.+.-|-.-.++-.+-..|.++
T Consensus 141 ~~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~ 220 (449)
T COG3014 141 SAKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSG 220 (449)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 998888888876532 2211 12345566666677777888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 509 LEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 509 l~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+-..|++ ++...+..+.....-+.
T Consensus 221 lf~a~n~-dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 221 LFYALNG-DVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HhcccCc-cHhHHHHHHHHHhccCc
Confidence 9998888 67777777766665443
No 457
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=42.19 E-value=1.2e+02 Score=23.52 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 496 ~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
++...++....++++.+|+|+.+...+......+.-.+..+
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~eyn~~RNaQ 61 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQ 61 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666788888887777776655555544444
No 458
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=41.54 E-value=1.1e+02 Score=23.41 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHH
Q 008540 496 ADLDLAEFDIKKALE 510 (562)
Q Consensus 496 ~~~~~A~~~~~~al~ 510 (562)
++|++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
No 459
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.19 E-value=2e+02 Score=23.58 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=30.8
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 497 (562)
..+..|...+-.|+|..|.+...++-+..+...-.|.--|++-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 345667777777888888888877766655544555555665555553
No 460
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.74 E-value=2.9e+02 Score=26.79 Aligned_cols=102 Identities=15% Similarity=-0.011 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
-+.+=+..+++.+++.-|...-.-.++.+...... +++....+.++...+-.+- -.+..-...|+.+. +.-...-
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~---p~r~~fi~~ai~WS-~~~~~~~ 87 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE---PERKKFIKAAIKWS-KFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT----TTHHHHHHHHHHHH-HTSS-TT
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHH-ccCCCCC
Confidence 34455566777888888887776666666553322 2222122222111110000 00111123444444 2222223
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
.++.-+...|..|.+-+++.+|+.+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 568888899999999999999888873
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.51 E-value=3.2e+02 Score=28.40 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=70.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
++|..+.-.|....-+.+|..|.+++.+|++..|..... ..+..+...+..+.+-+|++.+-...|+..++
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~al---------Gf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ 315 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAAL---------GFRQQVNKLMIVVELLLGEIPERSVFRQPGMR 315 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhh---------hHHHHHHHHHHHHHHHcCCCcchhhhcCccHH
Confidence 567788888888888999999999999999998864433 12223333344455567777665444443332
Q ss_pred cCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 477 LDSRNVKALYRRAQA--YIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a--~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
.....||.+.+| ...+.+|..-++.|+.-+..|-...-+
T Consensus 316 ---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~Li 356 (493)
T KOG2581|consen 316 ---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLI 356 (493)
T ss_pred ---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHH
Confidence 133456666554 344566777777777777666555433
No 462
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.37 E-value=44 Score=33.80 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH-h---
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL-D--- 476 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al-~--- 476 (562)
.++..++...+++....-++...+|+........ ....++-.+.+|.++.++|.-+....+--+ +
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-----------qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~ 172 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-----------QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICK 172 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCcc-----------chhhhHHHHHHHHHHhhcccccCCccchhHHHHhc
Confidence 4556666666667766677777777766543332 133446667788888888877665543321 1
Q ss_pred cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 477 LDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 477 ~~p~~-----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.+|.. ...+|.-|..+..+++|+.|+.+|..++..
T Consensus 173 ~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 173 ANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred cCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 13332 346667889999999999999999988753
No 463
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.32 E-value=91 Score=31.59 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
.+-..+..+...|+.++..++|..|...|..|..+...-
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei 74 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEI 74 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999999999999987643
No 464
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=40.22 E-value=59 Score=35.01 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=53.4
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
-.+|.-|+..|.+.= -+...+|...|.+++++++|..|++-|++|+++-..+ +++...+..+ ..-.--..-+.
T Consensus 569 ~ErYqlaV~mckKc~---iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~---ieGgpp~dVq~ 642 (1141)
T KOG1811|consen 569 AERYQLAVEMCKKCG---IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINL---IEGGPPRDVQD 642 (1141)
T ss_pred HHHHHHHHHHHhhcC---CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHh---hcCCCcchHHH
Confidence 445666777666541 2345789999999999999999999999999986554 3444443322 22111122334
Q ss_pred HHhhccccCCC
Q 008540 540 YGNMFAKMTEP 550 (562)
Q Consensus 540 ~~~~f~~~~~~ 550 (562)
.+.|+..+.++
T Consensus 643 Vrem~dhlak~ 653 (1141)
T KOG1811|consen 643 VREMLDHLAKP 653 (1141)
T ss_pred HHHHHHHhccC
Confidence 55566655554
No 465
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.36 E-value=3.4e+02 Score=27.34 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCC--------ChHHHHHHHHH--HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC--H
Q 008540 415 YARASKRYEKAVKYIEYDTSF--------GDEEKKQAKAL--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN--V 482 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~--------~~~~~~~~~~~--~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~--~ 482 (562)
..+|.+.+++|++........ ...+....+.. .+-+-..+|.|..|+|+..+|++.++...+--|-. .
T Consensus 232 i~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~l 311 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTML 311 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHH
Confidence 456677777777654432111 00111112222 23333467999999999999999999887766621 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKK 507 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (562)
..+-++-.+++.+.-|-+....+-+
T Consensus 312 niheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 312 NIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666655444444433
No 466
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=39.01 E-value=1e+02 Score=27.37 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc----CCCC---------------------hHHHHHHHHHHHHHHhcH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----TSFG---------------------DEEKKQAKALKVACNLNN 454 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~----~~~~---------------------~~~~~~~~~~~~~~~~nl 454 (562)
......+...+..|+.+.|+....+|...+... +... -.+. .............
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~-~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDD-YVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeec-cCChHHHHHHHHH
Confidence 345566777888899999999999998876421 0000 0000 1111223335578
Q ss_pred HHHHhhccCHHHHHHHHHHHHh-cC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLD-LD------S-RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~-~~------p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
+.-+++.|+.+.|.+.++.+-. ++ | ........+|..++..|++.+|...|..|+.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999999999998877622 11 2 2245667889999999999999999999874
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.84 E-value=1.8e+02 Score=22.34 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=10.7
Q ss_pred cHHHHHhhccCHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al 475 (562)
-.|.-+-+.|+|.+|+.+|..++
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 468
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=38.77 E-value=2.5e+02 Score=28.71 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=65.1
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--CC------
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL--DS------ 479 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~--~p------ 479 (562)
...++.....+-+...++...+-++........++.--+ ...+-+-..|+++++++-+....+ |.+. -|
T Consensus 139 s~~~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y--~iaNlL~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di~~~~ 215 (413)
T COG5600 139 SELNQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLY--YIANLLFQIYLRLGRFKLCENFLK-ASKEVSMPDISEYQ 215 (413)
T ss_pred chhhHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHH--HHHHHHHHHHHHhccHHHHHHHHH-hcccccccccchhh
Confidence 334455566777777777776655443311111111111 112345678999999887654433 2222 01
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 480 --RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 480 --~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
.-+-.+|.+|.+|+...++.+|-..++.|+..-|.
T Consensus 216 ~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 216 KSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred hcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 22457889999999999999999999999987776
No 469
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.06 E-value=1.2e+02 Score=33.52 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=45.8
Q ss_pred HHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
.+..++.|+|..+..+..|+.|.++|.+.-. .-+...||+++..|++-.... .--|++......++..
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHH
Confidence 3455688999999999999999999976533 335567777777776543322 2235655555555444
Q ss_pred HH
Q 008540 526 KE 527 (562)
Q Consensus 526 ~~ 527 (562)
-.
T Consensus 862 f~ 863 (1189)
T KOG2041|consen 862 FT 863 (1189)
T ss_pred HH
Confidence 33
No 470
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=36.60 E-value=1.2e+02 Score=23.21 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.3
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (562)
..++.++.|..+.+.|..++++|++..|+.++.=|--++
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwL 65 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWL 65 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999987665543
No 471
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.25 E-value=1.9e+02 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhCCCC
Q 008540 501 AEFDIKKALEIDPDN 515 (562)
Q Consensus 501 A~~~~~~al~l~p~~ 515 (562)
|++.|.++++.+|+.
T Consensus 32 aie~l~~~~k~e~~~ 46 (75)
T cd02678 32 ALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHhhCCCH
Confidence 444455555566643
No 472
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.98 E-value=61 Score=19.36 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=14.5
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
|+.+-.+|.+.+++++|.+.+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555666666666666655443
No 473
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=35.95 E-value=67 Score=19.30 Aligned_cols=26 Identities=15% Similarity=-0.029 Sum_probs=16.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
|+.+..++.+.|+++.|...++.-.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566667777777777776665443
No 474
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.46 E-value=1e+02 Score=27.02 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=35.5
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhh
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEY 431 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~ 431 (562)
+.+++-..-....+.|..+...| ++.+|..+|-+||.+++.
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 45666667778889999999999 999999999999998875
No 475
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.34 E-value=1.4e+02 Score=28.81 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|+.|+++....-..+ +.++..+.+|.+..|+. +++.++|+...++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt-------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4588999999998855422111 24566677888888776 5788888887766654
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=34.80 E-value=69 Score=35.46 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDI 505 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~-~ka~~~~a~a~~~l~~~~~A~~~~ 505 (562)
-..|-+.|+|..|.+...+... |.. ...|...|.-+-..|+|.+|...|
T Consensus 798 i~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 798 IDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 3455666777777666655543 322 344555566666666666555443
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.75 E-value=2.2e+02 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=23.8
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (562)
...++++.|.|++|.+.+++... +|++.+-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44577888999999999888888 7777665
No 478
>PF13041 PPR_2: PPR repeat family
Probab=33.80 E-value=1.5e+02 Score=19.99 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 485 LYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|..+-.+|.+.|++++|.+.|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444445555555555555555443
No 479
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.72 E-value=4.2e+02 Score=25.15 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=48.8
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ 482 (562)
...+++.+..++|+..-..-++-.|.+... ..-+-..+.-.|+|++|...|+-+-.++|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456788889999999998888887766543 22344555678999999999999999999763
No 480
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.12 E-value=3.7e+02 Score=26.55 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 442 ~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~--p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
....++..+-+.++..+++.+.|.+|+...+.++. +| ++-+..|..-.++|....+..++...+..|..+
T Consensus 119 kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 119 KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 33445666677889999999999999999988764 22 456788889999999999999999999888765
No 481
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.33 E-value=1.1e+02 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
++.+++-..-.+-.++|..++.+|+++++..++-.||.+++.
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 466677777778889999999999999999999999988774
No 482
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=32.14 E-value=2.5e+02 Score=25.32 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT 548 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~ 548 (562)
|--..++|+.++-|-..-=...+...++...++||.- .++...+..-..+.++...+.+..+++++....
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~~A~ 164 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEEAAA 164 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666655444455556666667777752 344445554444444445555566666665543
No 483
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.87 E-value=1.1e+02 Score=30.50 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=50.1
Q ss_pred HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhc-HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHH
Q 008540 408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN-NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486 (562)
Q Consensus 408 ~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~ 486 (562)
-..+.+.|..-...|.+++..-|.+... |.. -+.-+.-.++++.|...+.++|+++|.+++.|+
T Consensus 116 Y~~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 116 YVIKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3344556777888899999988877654 222 233455678999999999999999999977554
Q ss_pred ---HHHHHHH
Q 008540 487 ---RRAQAYI 493 (562)
Q Consensus 487 ---~~a~a~~ 493 (562)
|+-..|.
T Consensus 181 eyfr~El~yi 190 (435)
T COG5191 181 EYFRMELMYI 190 (435)
T ss_pred HHHHHHHHHH
Confidence 4444443
No 484
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=31.62 E-value=3.7e+02 Score=27.19 Aligned_cols=150 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCChHHH-----HHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540 395 KIEAAGKKKEQGNTLFK---AGKYARASKRYEKAVKYIEYDTSFGDEEK-----KQAKALKVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~---~g~~~~A~~~y~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (562)
..+.+..+...|..... ....+.|...|++|.-++..-........ ..+......++.++++++...--|.+
T Consensus 114 Lfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe~~~~k 193 (345)
T cd09034 114 LFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQECFLLK 193 (345)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---------------------HHHHhcCCC---------------------CHHHHHHHHHHHHHcCCHHHHHHH
Q 008540 467 AEKLC---------------------TKVLDLDSR---------------------NVKALYRRAQAYIQMADLDLAEFD 504 (562)
Q Consensus 467 A~~~~---------------------~~al~~~p~---------------------~~ka~~~~a~a~~~l~~~~~A~~~ 504 (562)
|+..- .+++.-.+. ..-|+|+.|..+...+++.+|+..
T Consensus 194 a~~~~~~~~~liakLa~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~ 273 (345)
T cd09034 194 AEEDKKAKLSLLARLACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIAR 273 (345)
T ss_pred HHhcccCcHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Q ss_pred HHHHHHhCCCCHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhc
Q 008540 505 IKKALEIDPDNRDVKLE--------YKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 505 ~~~al~l~p~~~~~~~~--------l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
|+.|...--.-...... +..+...+.+..+...+.-..++
T Consensus 274 L~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy 321 (345)
T cd09034 274 LQAALELLKESERLCKSFLLDVWGNLKKLKEKIEKELEKAERENDFIY 321 (345)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhHhh
No 485
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=31.18 E-value=2.7e+02 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.+.-+++.+.|++..-+|.+++ ++.|--+..+.
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrM 209 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRM 209 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHH
Confidence 3334455666666666666553 34444444443
No 486
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=30.89 E-value=5.3e+02 Score=25.38 Aligned_cols=115 Identities=10% Similarity=0.065 Sum_probs=67.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (562)
.-..+++.++|++=-+.|.+...-...+..... . -........++.+..+-. .........+.-++..|++.-+
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~-~--Y~~~~~~~~l~D~~~~~~---~~~~~~~~LkaWv~a~P~Sy~A 79 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQ-R--YFRAWMSSTLFDMDSVVD---AWQARLAVLKAWVAACPKSYHA 79 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccc-h--HHHHHhhccccCcchhhh---HHHhHHHHHHHHHHHCCCChHH
Confidence 345678889998877778777654433222210 0 000000000111111110 1224555666667889999888
Q ss_pred HHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 485 LYRRAQAYIQMA----------------------DLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 485 ~~~~a~a~~~l~----------------------~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+..+|..+.... -.+.|..++.+|+.++|....+...+-.+
T Consensus 80 ~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~ 142 (277)
T PF13226_consen 80 HLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINI 142 (277)
T ss_pred HHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 888887776652 24689999999999999987655555444
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.00 E-value=3.7e+02 Score=26.54 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH-HHHHHHH--
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ-AEKLCTK-- 473 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~-A~~~~~~-- 473 (562)
..+......-..++..|+|..|+..+.+..+.+....... |. ...-.++.++.. .....+.
T Consensus 125 ~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~-------------c~---~~L~~~L~e~~~~i~~~ld~~l 188 (291)
T PF10475_consen 125 KTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS-------------CV---RHLSSQLQETLELIEEQLDSDL 188 (291)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch-------------HH---HHHhHHHHHHHHHHHHHHHHHH
Confidence 3444555666778889999999999988887765322210 01 111111111111 1111111
Q ss_pred ---HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 474 ---VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 474 ---al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+... ++..|-..=.||..+|+...+.+.+....
T Consensus 189 ~~~~~~F---d~~~Y~~v~~AY~lLgk~~~~~dkl~~~f 224 (291)
T PF10475_consen 189 SKVCQDF---DPDKYSKVQEAYQLLGKTQSAMDKLQMHF 224 (291)
T ss_pred HHHHHhC---CHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1123 34667788888899998887776555543
No 488
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.92 E-value=1.3e+02 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
.+|..++..|++++|..+|-+|+.+.|+-.+....+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 578888888888888888888888888764444433
No 489
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.91 E-value=3.8e+02 Score=29.34 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=29.3
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
.|-.+-..++.++|-.+|++.+..+|+ .+++..|+-+.+.|-...|...++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 48 KAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 344444455556666666666665555 455556666666666666655555
No 490
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=29.45 E-value=25 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=12.9
Q ss_pred HHHHHhhccccCCCCC
Q 008540 537 AKFYGNMFAKMTEPKE 552 (562)
Q Consensus 537 ~~~~~~~f~~~~~~~~ 552 (562)
+.+|++||+++.+..+
T Consensus 29 ~dWYk~MfkqiHk~~~ 44 (50)
T smart00459 29 KDWYRTMFKQIHRKGP 44 (50)
T ss_pred HHHHHHHHHHHHccCC
Confidence 3499999999987764
No 491
>PRK11619 lytic murein transglycosylase; Provisional
Probab=29.42 E-value=1.4e+02 Score=33.26 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=43.0
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
..+..++|+.+...+...-.......+.+|++|+++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344788888877777775443345678999999999999999999999998753
No 492
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.32 E-value=2.8e+02 Score=24.59 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=46.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
........+|.+++.|+.+.|.+..+.+-.-..... ... +. ......+.|..++..|+|.+|...+..++.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP------L~--~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP------LA--QTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE------HH--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC------HH--hhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345677899999999999999888765433211100 000 00 111245899999999999999999988874
No 493
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=29.32 E-value=8.9e+02 Score=31.37 Aligned_cols=67 Identities=16% Similarity=0.058 Sum_probs=59.7
Q ss_pred HHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
+.....+|++.|....+.|+++.|-.+.-.|.+.. -+.++..+|+.+...|+-..|+..++.-+.++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34567789999999999999999999998888876 46899999999999999999999999999664
No 494
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.27 E-value=1.3e+02 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=41.4
Q ss_pred HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008540 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (562)
Q Consensus 445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l 495 (562)
.++..+.--|+.+-+|.|+|..|...+..+.. |.+.+....+|+++.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 45667777899999999999999999999887 667778888888877654
No 495
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.27 E-value=2.4e+02 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=42.9
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKAL 485 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~ 485 (562)
.+.|.+-...|.+++..-|+++.. |..-|.-.+.-+ +.+.|...+.++|+.+|++++.|
T Consensus 118 ~~~~~~v~ki~~~~l~~Hp~~~dL---------------WI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 118 KKTYGEVKKIFAAMLAKHPNNPDL---------------WIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hcchhHHHHHHHHHHHhCCCCchh---------------HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 444888888899999998887765 333333333333 48999999999999999997644
No 496
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=29.26 E-value=1.7e+02 Score=24.35 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=35.6
Q ss_pred ccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008540 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (562)
Q Consensus 388 ~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (562)
+..+...-+..+..+..+|..+++.|+.+.|--.|-+.+.++
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 455666778899999999999999999999999999999887
No 497
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.14 E-value=6.2e+02 Score=30.15 Aligned_cols=112 Identities=20% Similarity=0.086 Sum_probs=49.4
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHH
Q 008540 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ 466 (562)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~ 466 (562)
+++.|=+-..+.++.+ -..+++=+.+.=+..|.+|+..+..... .+++..+.++.-. +++-|+.+++-+ .++.
T Consensus 865 kDPkEyLP~L~el~~m-~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~---Ly~~aL~ly~~~~e~~k~ 940 (1265)
T KOG1920|consen 865 KDPKEYLPFLNELKKM-ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHG---LYDEALALYKPDSEKQKV 940 (1265)
T ss_pred cChHHHHHHHHHHhhc-hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcc---cchhhhheeccCHHHHHH
Confidence 3444444444444421 2233344455556666677666554432 3333322222211 334444444433 2222
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
....|-.-|.-.- -+-.-|.+|...|+.++|++.|+.+.
T Consensus 941 i~~~ya~hL~~~~----~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 941 IYEAYADHLREEL----MSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHHHHHhc----cccHHHHHHHHhccHHHHHHHHHHhc
Confidence 2222222222111 11234566777777787777776543
No 498
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=27.27 E-value=1.7e+02 Score=32.09 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=36.4
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
.+...++|.+|....++.-++-| ..|+.-|+-+....+|++|.+.|.+|
T Consensus 782 lHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred heeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 44456678888777766555544 46788888888899999999888776
No 499
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.97 E-value=1.2e+02 Score=24.95 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=31.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (562)
.-+.+.+.+...+|-..+-.|+|..|.+...++-+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 346677888889999999999999999999999765
No 500
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.88 E-value=6.5e+02 Score=25.17 Aligned_cols=63 Identities=24% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNK 534 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l-~~l~~~~~~~~~ 534 (562)
.++||....+|+..|. .+ .|..|. .-|..|+++|..+++.+.+++.++..+ +++.+.+.+.++
T Consensus 7 l~kaI~lv~kA~~eD~--a~-nY~eA~-----~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEk 70 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN--AK-NYEEAL-----RLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEK 70 (439)
T ss_pred HHHHHHHHHHHhhhcc--hh-chHHHH-----HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHH
Confidence 4678888888887653 11 122221 225678888999998887776555554 345566655543
Done!