Query 008540
Match_columns 562
No_of_seqs 544 out of 4329
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 05:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jxv_A 70 kDa peptidyl-prolyl 100.0 3.7E-66 1.3E-70 526.9 28.5 355 27-383 1-355 (356)
2 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 8.4E-57 2.9E-61 477.1 46.7 386 151-552 29-421 (457)
3 1kt0_A FKBP51, 51 kDa FK506-bi 100.0 1E-43 3.5E-48 376.6 22.8 376 35-505 29-408 (457)
4 1q1c_A FK506-binding protein 4 100.0 3E-40 1E-44 322.7 28.4 223 35-264 49-276 (280)
5 1p5q_A FKBP52, FK506-binding p 100.0 4E-37 1.4E-41 312.8 38.2 276 264-549 19-297 (336)
6 2if4_A ATFKBP42; FKBP-like, al 100.0 6.9E-38 2.4E-42 318.7 24.0 277 269-549 48-331 (338)
7 3jxv_A 70 kDa peptidyl-prolyl 100.0 3.6E-37 1.2E-41 313.4 27.5 221 35-262 125-355 (356)
8 1q1c_A FK506-binding protein 4 100.0 2.5E-36 8.7E-41 294.9 29.7 223 151-389 49-280 (280)
9 2if4_A ATFKBP42; FKBP-like, al 99.9 3.6E-26 1.2E-30 232.2 14.3 291 26-517 38-334 (338)
10 1yat_A FK506 binding protein; 99.9 2.8E-24 9.4E-29 181.2 15.3 111 33-144 2-113 (113)
11 3kz7_A FK506-binding protein 3 99.9 5E-24 1.7E-28 181.5 15.1 109 35-143 2-118 (119)
12 3o5e_A Peptidyl-prolyl CIS-tra 99.9 5.1E-24 1.7E-28 187.0 15.0 111 35-145 33-143 (144)
13 3o5q_A Peptidyl-prolyl CIS-tra 99.9 4.1E-24 1.4E-28 184.0 13.9 111 35-145 17-127 (128)
14 1r9h_A FKB-6, FK506 binding pr 99.9 4.4E-24 1.5E-28 185.4 13.9 112 35-146 12-123 (135)
15 2y78_A Peptidyl-prolyl CIS-tra 99.9 1.1E-23 3.8E-28 181.9 15.2 110 33-143 24-133 (133)
16 2ppn_A FK506-binding protein 1 99.9 1.3E-23 4.6E-28 175.3 13.2 107 38-144 1-107 (107)
17 2f4e_A ATFKBP42; FKBP-like, al 99.9 2.9E-23 1E-27 188.7 16.5 130 18-148 30-163 (180)
18 2lgo_A FKBP; infectious diseas 99.9 1.3E-23 4.5E-28 180.8 13.3 113 31-143 16-130 (130)
19 3b7x_A FK506-binding protein 6 99.9 3.9E-24 1.3E-28 185.5 9.9 124 20-144 7-133 (134)
20 4dip_A Peptidyl-prolyl CIS-tra 99.9 5.3E-23 1.8E-27 176.6 14.5 111 33-145 8-123 (125)
21 2lkn_A AH receptor-interacting 99.9 1.3E-23 4.3E-28 185.9 10.3 115 34-148 7-161 (165)
22 1jvw_A Macrophage infectivity 99.9 3.4E-23 1.2E-27 185.1 12.3 112 32-146 32-144 (167)
23 3oe2_A Peptidyl-prolyl CIS-tra 99.9 9.2E-23 3.1E-27 189.0 14.4 106 33-144 113-218 (219)
24 2vn1_A 70 kDa peptidylprolyl i 99.9 2E-22 6.9E-27 173.9 15.6 112 33-145 11-127 (129)
25 3uf8_A Ubiquitin-like protein 99.9 1.1E-22 3.6E-27 189.4 14.8 132 11-143 73-209 (209)
26 1u79_A FKBP-type peptidyl-prol 99.9 5E-23 1.7E-27 177.5 10.4 111 32-143 7-128 (129)
27 2awg_A 38 kDa FK-506 binding p 99.9 3.3E-22 1.1E-26 169.6 15.0 108 33-144 8-117 (118)
28 2jwx_A FKBP38NTD, FK506-bindin 99.9 2.6E-22 9E-27 177.3 14.7 109 33-146 38-150 (157)
29 1fd9_A Protein (macrophage inf 99.9 1.9E-22 6.6E-27 187.2 14.4 111 32-145 101-211 (213)
30 1p5q_A FKBP52, FK506-binding p 99.9 3.4E-22 1.2E-26 202.7 14.2 270 147-510 19-293 (336)
31 1q6h_A FKBP-type peptidyl-prol 99.9 7.6E-22 2.6E-26 184.4 15.0 108 33-144 117-224 (224)
32 3rkv_A Putative peptidylprolyl 99.9 6.1E-22 2.1E-26 178.4 13.8 154 392-545 4-161 (162)
33 2d9f_A FK506-binding protein 8 99.9 6.7E-22 2.3E-26 171.6 11.9 113 32-148 11-126 (135)
34 2pbc_A FK506-binding protein 2 99.8 5.9E-21 2E-25 157.7 11.9 96 51-146 4-99 (102)
35 1r9h_A FKB-6, FK506 binding pr 99.8 3.1E-20 1.1E-24 161.1 13.3 118 151-274 12-135 (135)
36 3o5e_A Peptidyl-prolyl CIS-tra 99.8 7E-20 2.4E-24 160.6 15.3 114 264-382 27-142 (144)
37 2fbn_A 70 kDa peptidylprolyl i 99.8 3.9E-19 1.3E-23 165.5 20.1 175 373-547 12-187 (198)
38 2f4e_A ATFKBP42; FKBP-like, al 99.8 1.4E-19 4.8E-24 164.4 15.2 127 269-399 48-179 (180)
39 3o5q_A Peptidyl-prolyl CIS-tra 99.8 2.4E-19 8.2E-24 154.1 14.4 110 268-382 17-126 (128)
40 3kz7_A FK506-binding protein 3 99.8 4.1E-19 1.4E-23 151.0 15.5 111 269-381 3-118 (119)
41 4gco_A Protein STI-1; structur 99.8 2.4E-19 8.3E-24 154.4 14.3 114 397-525 11-124 (126)
42 2lkn_A AH receptor-interacting 99.8 4.4E-20 1.5E-24 163.2 9.1 86 268-355 8-96 (165)
43 2hr2_A Hypothetical protein; a 99.8 3.7E-19 1.3E-23 156.9 11.7 138 395-535 7-155 (159)
44 2jwx_A FKBP38NTD, FK506-bindin 99.8 5.5E-19 1.9E-23 156.0 12.6 110 149-263 39-150 (157)
45 2ppn_A FK506-binding protein 1 99.8 9E-19 3.1E-23 145.9 13.0 102 154-260 1-106 (107)
46 2awg_A 38 kDa FK-506 binding p 99.8 1.2E-18 4E-23 147.7 13.1 109 148-261 8-117 (118)
47 1yat_A FK506 binding protein; 99.8 1.4E-18 4.8E-23 146.1 13.2 104 152-260 5-112 (113)
48 3b7x_A FK506-binding protein 6 99.8 6.4E-19 2.2E-23 152.6 10.5 115 262-382 18-133 (134)
49 2vn1_A 70 kDa peptidylprolyl i 99.8 4.4E-18 1.5E-22 146.6 15.6 115 264-383 10-127 (129)
50 2lgo_A FKBP; infectious diseas 99.8 2.9E-18 1E-22 147.4 13.5 105 151-260 20-130 (130)
51 4dt4_A FKBP-type 16 kDa peptid 99.8 3E-19 1E-23 158.8 7.4 132 52-192 24-158 (169)
52 2kr7_A FKBP-type peptidyl-prol 99.8 1.6E-18 5.5E-23 152.6 11.9 131 51-192 5-139 (151)
53 2y78_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.6E-23 148.0 12.6 105 150-260 25-133 (133)
54 1ihg_A Cyclophilin 40; ppiase 99.8 7.3E-18 2.5E-22 172.8 17.5 155 391-545 215-370 (370)
55 3oe2_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.4E-23 159.0 12.6 104 150-261 114-218 (219)
56 4dip_A Peptidyl-prolyl CIS-tra 99.8 4.7E-18 1.6E-22 145.6 13.2 115 266-384 8-124 (125)
57 3prb_A FKBP-type peptidyl-prol 99.8 3.8E-19 1.3E-23 165.9 6.4 169 53-232 2-190 (231)
58 3pr9_A FKBP-type peptidyl-prol 99.8 4E-19 1.4E-23 156.5 5.8 128 53-192 2-143 (157)
59 2d9f_A FK506-binding protein 8 99.8 2.4E-18 8.2E-23 149.1 10.1 110 148-262 12-123 (135)
60 1jvw_A Macrophage infectivity 99.8 1.2E-17 4E-22 149.2 14.6 122 268-398 35-156 (167)
61 3uf8_A Ubiquitin-like protein 99.7 1.7E-17 5.8E-22 154.3 15.0 107 148-260 99-209 (209)
62 1ix5_A FKBP; ppiase, isomerase 99.7 3.2E-19 1.1E-23 157.0 3.2 131 52-192 1-144 (151)
63 2kfw_A FKBP-type peptidyl-prol 99.7 4.9E-18 1.7E-22 154.9 9.7 130 53-192 3-134 (196)
64 1u79_A FKBP-type peptidyl-prol 99.7 1E-17 3.5E-22 144.1 9.9 110 150-260 9-128 (129)
65 2k8i_A SLYD, peptidyl-prolyl C 99.7 1.8E-17 6E-22 148.4 11.5 131 53-193 3-135 (171)
66 1fd9_A Protein (macrophage inf 99.7 4.7E-17 1.6E-21 151.0 12.8 104 150-261 103-210 (213)
67 2pbc_A FK506-binding protein 2 99.7 5.2E-17 1.8E-21 133.9 10.2 91 167-262 4-98 (102)
68 4gcn_A Protein STI-1; structur 99.7 1.5E-16 5.2E-21 136.9 12.0 115 395-525 4-125 (127)
69 3upv_A Heat shock protein STI1 99.7 2.7E-16 9.1E-21 134.6 12.6 117 398-529 3-125 (126)
70 3cgm_A SLYD, peptidyl-prolyl C 99.7 6.3E-17 2.2E-21 142.9 7.3 126 53-193 3-131 (158)
71 1q6h_A FKBP-type peptidyl-prol 99.7 9.9E-16 3.4E-20 143.1 14.8 104 269-381 120-223 (224)
72 1hxv_A Trigger factor; FKBP fo 99.7 1.5E-16 5E-21 132.8 7.8 85 51-143 28-112 (113)
73 3sz7_A HSC70 cochaperone (SGT) 99.6 3E-15 1E-19 134.5 13.3 121 397-532 9-131 (164)
74 3gyz_A Chaperone protein IPGC; 99.6 4.9E-15 1.7E-19 131.4 13.5 105 397-516 34-138 (151)
75 2xcb_A PCRH, regulatory protei 99.6 1.2E-14 4.2E-19 127.3 13.2 123 397-534 16-138 (142)
76 2vgx_A Chaperone SYCD; alterna 99.6 9.5E-15 3.2E-19 129.2 12.4 119 397-530 19-137 (148)
77 4ga2_A E3 SUMO-protein ligase 99.6 1.1E-14 3.9E-19 129.0 11.8 115 397-526 29-144 (150)
78 3q49_B STIP1 homology and U bo 99.6 1.5E-14 5E-19 125.2 11.3 120 399-533 9-133 (137)
79 4ga2_A E3 SUMO-protein ligase 99.6 6.7E-15 2.3E-19 130.5 8.5 125 405-544 3-127 (150)
80 3urz_A Uncharacterized protein 99.5 1.7E-13 5.8E-18 128.4 15.9 132 399-530 4-136 (208)
81 1a17_A Serine/threonine protei 99.5 4E-13 1.4E-17 119.7 16.9 123 392-529 6-128 (166)
82 1elw_A TPR1-domain of HOP; HOP 99.5 1.7E-13 5.9E-18 114.2 12.7 114 398-526 3-116 (118)
83 4gyw_A UDP-N-acetylglucosamine 99.5 1.6E-13 5.4E-18 151.9 14.9 137 397-533 7-162 (723)
84 4dt4_A FKBP-type 16 kDa peptid 99.5 5.2E-14 1.8E-18 125.0 8.6 82 168-262 24-109 (169)
85 2vyi_A SGTA protein; chaperone 99.5 6.1E-13 2.1E-17 112.9 14.0 123 393-530 6-128 (131)
86 2kr7_A FKBP-type peptidyl-prol 99.5 2.3E-13 7.8E-18 119.6 10.9 124 167-305 5-135 (151)
87 2xev_A YBGF; tetratricopeptide 99.5 6.7E-13 2.3E-17 113.3 13.4 116 400-527 3-121 (129)
88 2dba_A Smooth muscle cell asso 99.5 3.9E-13 1.3E-17 117.3 12.1 116 399-526 28-143 (148)
89 1hxi_A PEX5, peroxisome target 99.5 1.5E-13 5.2E-18 116.9 9.1 102 401-517 19-120 (121)
90 2lni_A Stress-induced-phosphop 99.5 3.5E-13 1.2E-17 115.2 11.2 116 398-528 15-130 (133)
91 1hxv_A Trigger factor; FKBP fo 99.4 2.3E-13 7.9E-18 113.3 9.2 82 167-260 28-112 (113)
92 1elr_A TPR2A-domain of HOP; HO 99.4 7.1E-13 2.4E-17 112.6 12.3 119 398-532 3-128 (131)
93 3pr9_A FKBP-type peptidyl-prol 99.4 1E-13 3.5E-18 121.9 6.7 79 169-261 2-97 (157)
94 4i17_A Hypothetical protein; T 99.4 1.1E-12 3.7E-17 124.2 14.4 130 400-545 8-145 (228)
95 2pl2_A Hypothetical conserved 99.4 4.1E-13 1.4E-17 126.7 10.9 126 402-544 42-178 (217)
96 2kfw_A FKBP-type peptidyl-prol 99.4 2.3E-13 7.9E-18 124.0 8.6 123 169-305 3-130 (196)
97 4gyw_A UDP-N-acetylglucosamine 99.4 5.9E-13 2E-17 147.4 12.9 68 448-515 111-178 (723)
98 1zu2_A Mitochondrial import re 99.4 2.9E-13 9.9E-18 118.9 7.6 102 410-526 13-135 (158)
99 2k8i_A SLYD, peptidyl-prolyl C 99.4 5.9E-13 2E-17 119.0 9.7 81 169-262 3-86 (171)
100 1ix5_A FKBP; ppiase, isomerase 99.4 3.9E-14 1.3E-18 124.5 1.9 80 169-261 2-98 (151)
101 2c2l_A CHIP, carboxy terminus 99.4 1.5E-12 5E-17 128.1 12.5 102 399-515 4-105 (281)
102 2h6f_A Protein farnesyltransfe 99.4 9.9E-13 3.4E-17 135.0 11.0 130 399-528 97-246 (382)
103 2pl2_A Hypothetical conserved 99.4 4E-12 1.4E-16 119.8 13.7 107 420-535 98-204 (217)
104 3vtx_A MAMA; tetratricopeptide 99.4 5.2E-12 1.8E-16 115.1 14.0 146 399-545 5-169 (184)
105 3prb_A FKBP-type peptidyl-prol 99.4 5.8E-13 2E-17 124.2 7.1 79 169-261 2-97 (231)
106 1na0_A Designed protein CTPR3; 99.4 1.2E-11 4.2E-16 103.8 14.6 114 399-527 9-122 (125)
107 2h6f_A Protein farnesyltransfe 99.4 2.4E-12 8.1E-17 132.1 11.9 132 399-530 131-288 (382)
108 3k9i_A BH0479 protein; putativ 99.4 8.8E-13 3E-17 111.2 7.0 97 411-522 2-101 (117)
109 3cgm_A SLYD, peptidyl-prolyl C 99.3 1.2E-12 4.1E-17 115.5 7.5 79 169-262 3-81 (158)
110 1wao_1 Serine/threonine protei 99.3 1.7E-12 5.7E-17 137.6 9.9 120 396-530 3-122 (477)
111 1w26_A Trigger factor, TF; cha 99.3 1.8E-12 6.2E-17 134.1 8.3 100 51-158 156-255 (432)
112 3urz_A Uncharacterized protein 99.3 1.6E-11 5.3E-16 114.9 13.0 107 404-526 59-200 (208)
113 3gyz_A Chaperone protein IPGC; 99.3 1.3E-12 4.5E-17 115.7 5.2 97 449-546 37-133 (151)
114 3vtx_A MAMA; tetratricopeptide 99.3 3.2E-11 1.1E-15 109.8 14.5 118 399-516 39-175 (184)
115 2kck_A TPR repeat; tetratricop 99.3 7.1E-12 2.4E-16 103.3 9.1 102 399-515 6-110 (112)
116 2e2e_A Formate-dependent nitri 99.3 2.4E-11 8.1E-16 110.0 13.1 113 399-526 44-159 (177)
117 4i17_A Hypothetical protein; T 99.3 2.9E-11 9.9E-16 114.2 13.5 117 401-532 44-169 (228)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2E-11 6.9E-16 113.8 12.2 129 398-545 5-149 (213)
119 4gco_A Protein STI-1; structur 99.3 4.3E-11 1.5E-15 102.4 12.7 98 447-545 12-109 (126)
120 3ieg_A DNAJ homolog subfamily 99.2 7.6E-11 2.6E-15 118.3 15.1 123 400-533 235-357 (359)
121 2fo7_A Synthetic consensus TPR 99.2 9.9E-11 3.4E-15 99.3 13.5 129 401-545 3-131 (136)
122 3uq3_A Heat shock protein STI1 99.2 5.2E-11 1.8E-15 113.8 12.3 112 399-525 139-256 (258)
123 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.9E-10 6.4E-15 111.2 15.8 114 397-525 41-154 (275)
124 1t11_A Trigger factor, TF; hel 99.2 4.9E-12 1.7E-16 129.1 4.6 101 51-159 159-259 (392)
125 2vsy_A XCC0866; transferase, g 99.2 5.8E-11 2E-15 128.7 13.2 131 399-545 23-156 (568)
126 3qky_A Outer membrane assembly 99.2 2.7E-10 9.2E-15 110.1 16.5 136 399-547 52-225 (261)
127 3qky_A Outer membrane assembly 99.2 5.2E-11 1.8E-15 115.1 11.1 135 399-546 15-177 (261)
128 4abn_A Tetratricopeptide repea 99.2 7E-11 2.4E-15 125.1 12.9 122 400-536 171-312 (474)
129 3as5_A MAMA; tetratricopeptide 99.2 2.2E-10 7.4E-15 103.2 14.3 132 399-546 42-173 (186)
130 2vgx_A Chaperone SYCD; alterna 99.2 2.1E-11 7.1E-16 107.5 6.8 110 420-545 8-117 (148)
131 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.7E-10 9.3E-15 107.7 14.8 110 399-520 4-134 (225)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.2 8.7E-11 3E-15 109.4 11.2 103 399-516 37-155 (213)
133 3u4t_A TPR repeat-containing p 99.2 1.6E-10 5.4E-15 111.8 13.4 73 451-523 77-149 (272)
134 2pzi_A Probable serine/threoni 99.2 1.3E-11 4.6E-16 136.6 6.3 126 399-525 433-577 (681)
135 3uq3_A Heat shock protein STI1 99.2 2.1E-10 7.3E-15 109.4 13.9 146 399-545 79-235 (258)
136 4abn_A Tetratricopeptide repea 99.2 1.2E-10 4.2E-15 123.2 12.8 130 399-545 102-249 (474)
137 4eqf_A PEX5-related protein; a 99.2 1.3E-10 4.5E-15 117.8 12.4 135 399-549 213-359 (365)
138 2pzi_A Probable serine/threoni 99.2 4.7E-11 1.6E-15 132.3 9.6 94 448-543 467-560 (681)
139 2l6j_A TPR repeat-containing p 99.2 9E-12 3.1E-16 103.0 2.9 94 399-507 4-103 (111)
140 2e2e_A Formate-dependent nitri 99.1 2E-11 7E-16 110.5 5.0 131 401-547 12-145 (177)
141 3as5_A MAMA; tetratricopeptide 99.1 1.9E-10 6.4E-15 103.6 11.3 132 398-545 7-138 (186)
142 2q7f_A YRRB protein; TPR, prot 99.1 4.5E-10 1.5E-14 106.3 14.1 133 400-532 58-209 (243)
143 2kat_A Uncharacterized protein 99.1 2.5E-10 8.7E-15 95.4 10.8 100 417-531 3-104 (115)
144 1fch_A Peroxisomal targeting s 99.1 2E-10 6.8E-15 116.2 12.0 123 399-536 217-350 (368)
145 2q7f_A YRRB protein; TPR, prot 99.1 3.5E-10 1.2E-14 107.1 12.9 79 449-527 160-238 (243)
146 1qqe_A Vesicular transport pro 99.1 4.6E-10 1.6E-14 110.7 14.1 130 397-535 75-218 (292)
147 2y4t_A DNAJ homolog subfamily 99.1 6.2E-10 2.1E-14 116.0 15.8 121 400-531 258-378 (450)
148 3mkr_A Coatomer subunit epsilo 99.1 5.1E-10 1.7E-14 110.4 14.2 116 399-531 130-249 (291)
149 2r5s_A Uncharacterized protein 99.1 2.1E-10 7.1E-15 104.0 10.2 81 464-545 90-172 (176)
150 3ieg_A DNAJ homolog subfamily 99.1 4.6E-10 1.6E-14 112.5 13.8 111 399-524 3-116 (359)
151 3qou_A Protein YBBN; thioredox 99.1 2.8E-10 9.6E-15 112.0 11.7 122 399-535 117-274 (287)
152 1hxi_A PEX5, peroxisome target 99.1 1E-09 3.6E-14 92.9 13.6 94 451-545 20-113 (121)
153 4gcn_A Protein STI-1; structur 99.1 3.5E-10 1.2E-14 96.7 10.5 96 448-544 8-110 (127)
154 1qqe_A Vesicular transport pro 99.1 3.7E-10 1.3E-14 111.3 12.2 112 398-518 116-235 (292)
155 2ho1_A Type 4 fimbrial biogene 99.1 7E-10 2.4E-14 105.9 13.8 85 449-533 142-226 (252)
156 3upv_A Heat shock protein STI1 99.1 8E-10 2.7E-14 93.8 12.7 96 448-544 4-99 (126)
157 4eqf_A PEX5-related protein; a 99.1 2.3E-10 7.9E-15 116.0 10.8 129 404-546 182-310 (365)
158 2vq2_A PILW, putative fimbrial 99.1 1E-09 3.5E-14 102.3 14.4 82 449-530 114-196 (225)
159 2gw1_A Mitochondrial precursor 99.1 4.4E-10 1.5E-14 119.0 13.2 106 395-516 2-107 (514)
160 2vq2_A PILW, putative fimbrial 99.1 8.4E-10 2.9E-14 102.9 13.6 96 449-545 77-175 (225)
161 3cv0_A Peroxisome targeting si 99.1 2.5E-10 8.7E-15 113.1 10.5 133 399-547 172-316 (327)
162 2xcb_A PCRH, regulatory protei 99.1 1.3E-10 4.5E-15 101.3 7.3 96 449-545 19-114 (142)
163 1w3b_A UDP-N-acetylglucosamine 99.1 6.4E-10 2.2E-14 113.8 12.9 146 399-545 169-333 (388)
164 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.4E-09 4.9E-14 102.7 14.2 132 400-544 42-211 (225)
165 3u4t_A TPR repeat-containing p 99.1 1.2E-09 4E-14 105.5 13.8 118 399-531 74-191 (272)
166 3fp2_A TPR repeat-containing p 99.1 4.7E-10 1.6E-14 119.7 11.9 116 387-518 13-128 (537)
167 2y4t_A DNAJ homolog subfamily 99.1 1.6E-09 5.3E-14 112.9 15.5 114 397-525 24-140 (450)
168 2ho1_A Type 4 fimbrial biogene 99.1 7.3E-10 2.5E-14 105.8 11.8 96 449-545 106-203 (252)
169 2l6j_A TPR repeat-containing p 99.1 1.4E-09 4.9E-14 89.5 12.0 67 449-515 5-71 (111)
170 1w3b_A UDP-N-acetylglucosamine 99.1 9.6E-10 3.3E-14 112.5 13.2 146 399-545 135-299 (388)
171 1na3_A Designed protein CTPR2; 99.1 2E-09 6.7E-14 85.2 12.2 81 448-528 9-89 (91)
172 3hym_B Cell division cycle pro 99.0 2.6E-09 8.7E-14 105.9 15.8 145 400-545 23-187 (330)
173 1fch_A Peroxisomal targeting s 99.0 2.3E-09 7.9E-14 108.3 15.5 147 399-546 132-314 (368)
174 2fo7_A Synthetic consensus TPR 99.0 1.3E-09 4.5E-14 92.2 11.6 101 400-515 36-136 (136)
175 3edt_B KLC 2, kinesin light ch 99.0 2E-09 6.9E-14 103.9 14.1 141 397-545 41-197 (283)
176 3sz7_A HSC70 cochaperone (SGT) 99.0 1.7E-09 5.9E-14 96.4 12.4 97 448-545 11-107 (164)
177 3hym_B Cell division cycle pro 99.0 1.5E-09 5E-14 107.6 13.2 133 399-547 90-223 (330)
178 3ro3_A PINS homolog, G-protein 99.0 3.2E-09 1.1E-13 93.0 14.0 140 396-545 6-157 (164)
179 2hr2_A Hypothetical protein; a 99.0 1.5E-09 5.2E-14 95.4 10.9 97 448-545 11-130 (159)
180 1xnf_A Lipoprotein NLPI; TPR, 99.0 1.8E-09 6.1E-14 104.2 11.0 125 409-545 15-139 (275)
181 3mkr_A Coatomer subunit epsilo 99.0 3.2E-09 1.1E-13 104.6 12.4 97 410-521 177-274 (291)
182 3ulq_A Response regulator aspa 99.0 7.3E-09 2.5E-13 105.9 15.4 132 396-535 140-283 (383)
183 3ma5_A Tetratricopeptide repea 99.0 3.5E-09 1.2E-13 86.2 10.4 67 449-515 8-74 (100)
184 3u3w_A Transcriptional activat 99.0 3E-09 1E-13 104.7 11.7 138 398-544 114-264 (293)
185 4g1t_A Interferon-induced prot 98.9 4E-09 1.4E-13 110.7 13.0 125 399-529 51-185 (472)
186 3u3w_A Transcriptional activat 98.9 5.6E-09 1.9E-13 102.8 13.1 107 398-512 154-267 (293)
187 2kc7_A BFR218_protein; tetratr 98.9 4.9E-09 1.7E-13 84.7 10.4 69 451-519 3-72 (99)
188 3q49_B STIP1 homology and U bo 98.9 7.8E-09 2.7E-13 88.6 12.3 97 448-545 9-105 (137)
189 3n71_A Histone lysine methyltr 98.9 1.4E-08 4.7E-13 107.1 16.5 143 393-543 303-461 (490)
190 2gw1_A Mitochondrial precursor 98.9 7.6E-09 2.6E-13 109.4 14.7 119 400-527 373-494 (514)
191 2vsy_A XCC0866; transferase, g 98.9 2.1E-09 7.3E-14 116.3 10.3 119 412-546 2-120 (568)
192 2kc7_A BFR218_protein; tetratr 98.9 5.9E-10 2E-14 90.2 4.3 93 402-516 3-95 (99)
193 3cv0_A Peroxisome targeting si 98.9 1.7E-08 5.9E-13 99.7 15.9 147 399-546 89-269 (327)
194 2kck_A TPR repeat; tetratricop 98.9 6.9E-09 2.4E-13 84.9 10.7 97 450-547 8-107 (112)
195 2ifu_A Gamma-SNAP; membrane fu 98.9 5.2E-09 1.8E-13 103.8 11.5 118 398-516 75-228 (307)
196 2ifu_A Gamma-SNAP; membrane fu 98.9 7.1E-09 2.4E-13 102.9 12.5 102 399-503 116-253 (307)
197 1na3_A Designed protein CTPR2; 98.9 5.4E-09 1.8E-13 82.6 9.3 84 398-496 8-91 (91)
198 3rkv_A Putative peptidylprolyl 98.9 5.7E-09 1.9E-13 92.8 10.3 95 448-543 11-123 (162)
199 3q15_A PSP28, response regulat 98.9 1.7E-08 5.7E-13 103.1 15.1 143 396-547 138-291 (378)
200 3ulq_A Response regulator aspa 98.9 1.3E-08 4.5E-13 104.0 14.1 109 395-512 180-294 (383)
201 3fp2_A TPR repeat-containing p 98.9 4.5E-09 1.5E-13 112.0 11.0 151 394-545 238-406 (537)
202 3q15_A PSP28, response regulat 98.9 1.8E-08 6.2E-13 102.9 15.1 109 397-514 180-293 (378)
203 1pc2_A Mitochondria fission pr 98.9 6.4E-09 2.2E-13 90.3 9.6 102 414-530 13-119 (152)
204 2qfc_A PLCR protein; TPR, HTH, 98.9 1.7E-08 5.9E-13 99.2 14.1 134 400-542 116-262 (293)
205 3edt_B KLC 2, kinesin light ch 98.9 1.7E-08 6E-13 97.2 13.2 109 396-511 82-198 (283)
206 2xpi_A Anaphase-promoting comp 98.8 1.7E-08 5.8E-13 109.2 14.0 132 399-546 373-504 (597)
207 1w26_A Trigger factor, TF; cha 98.8 5.4E-09 1.8E-13 108.1 9.5 85 167-262 156-242 (432)
208 2qfc_A PLCR protein; TPR, HTH, 98.8 2.4E-08 8.2E-13 98.2 13.8 107 398-512 154-267 (293)
209 1elw_A TPR1-domain of HOP; HOP 98.8 2.7E-08 9.3E-13 82.0 12.0 96 449-545 5-100 (118)
210 2xev_A YBGF; tetratricopeptide 98.8 2E-08 6.9E-13 85.0 11.3 95 451-546 5-105 (129)
211 4a1s_A PINS, partner of inscut 98.8 1.4E-08 4.7E-13 104.4 12.1 125 396-531 45-181 (411)
212 3nf1_A KLC 1, kinesin light ch 98.8 2.7E-08 9.2E-13 97.5 13.7 140 397-544 67-222 (311)
213 3ro3_A PINS homolog, G-protein 98.8 2.8E-08 9.6E-13 86.8 12.4 108 398-514 48-161 (164)
214 2lni_A Stress-induced-phosphop 98.8 2.6E-08 8.9E-13 84.3 11.5 97 448-545 16-112 (133)
215 3nf1_A KLC 1, kinesin light ch 98.8 3.5E-08 1.2E-12 96.7 13.9 109 396-511 108-224 (311)
216 3gw4_A Uncharacterized protein 98.8 2.6E-08 8.9E-13 91.3 12.2 129 398-535 25-166 (203)
217 2xpi_A Anaphase-promoting comp 98.8 7.5E-08 2.5E-12 104.1 16.9 147 399-546 305-470 (597)
218 3sf4_A G-protein-signaling mod 98.8 4.3E-08 1.5E-12 100.0 13.8 129 397-534 185-325 (406)
219 3ro2_A PINS homolog, G-protein 98.8 4.9E-08 1.7E-12 96.3 12.9 141 397-547 181-333 (338)
220 3ro2_A PINS homolog, G-protein 98.8 2.7E-08 9.2E-13 98.2 10.9 122 399-531 5-138 (338)
221 2dba_A Smooth muscle cell asso 98.8 8E-08 2.7E-12 83.0 12.4 96 449-545 29-127 (148)
222 2vyi_A SGTA protein; chaperone 98.7 1.4E-07 4.7E-12 79.2 13.2 98 447-545 11-108 (131)
223 1a17_A Serine/threonine protei 98.7 9.4E-08 3.2E-12 84.3 12.4 99 447-546 12-110 (166)
224 2ond_A Cleavage stimulation fa 98.7 6.7E-08 2.3E-12 95.8 12.7 147 401-548 101-272 (308)
225 3qww_A SET and MYND domain-con 98.7 1.6E-07 5.5E-12 97.4 15.8 123 396-525 295-430 (433)
226 1ouv_A Conserved hypothetical 98.7 1.1E-07 3.8E-12 92.0 13.9 75 450-528 76-158 (273)
227 3sf4_A G-protein-signaling mod 98.7 3.3E-08 1.1E-12 100.9 10.4 122 399-531 9-142 (406)
228 4a1s_A PINS, partner of inscut 98.7 4.3E-08 1.5E-12 100.7 11.1 137 398-544 222-370 (411)
229 2fbn_A 70 kDa peptidylprolyl i 98.7 1.7E-07 5.9E-12 86.1 13.8 98 447-545 37-150 (198)
230 1na0_A Designed protein CTPR3; 98.7 1.9E-07 6.4E-12 77.7 12.3 98 448-546 9-106 (125)
231 2c2l_A CHIP, carboxy terminus 98.7 9.4E-08 3.2E-12 93.5 11.6 95 449-544 5-99 (281)
232 2ond_A Cleavage stimulation fa 98.7 1.1E-07 3.7E-12 94.2 12.1 101 400-515 51-167 (308)
233 1elr_A TPR2A-domain of HOP; HO 98.7 1.1E-07 3.7E-12 79.9 10.3 96 449-545 5-107 (131)
234 3qwp_A SET and MYND domain-con 98.7 3.5E-07 1.2E-11 94.9 16.2 126 397-529 285-423 (429)
235 4g1t_A Interferon-induced prot 98.7 6.7E-08 2.3E-12 101.3 10.5 121 399-526 94-219 (472)
236 1wao_1 Serine/threonine protei 98.6 8.1E-09 2.8E-13 109.2 3.3 102 399-515 40-154 (477)
237 1dce_A Protein (RAB geranylger 98.6 2.1E-07 7.2E-12 100.3 14.2 116 399-529 63-191 (567)
238 4f3v_A ESX-1 secretion system 98.6 2.9E-07 1E-11 89.0 12.9 109 401-523 137-248 (282)
239 2v5f_A Prolyl 4-hydroxylase su 98.6 3.4E-07 1.2E-11 74.9 11.4 79 451-529 8-93 (104)
240 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-07 5.7E-12 87.5 10.4 129 399-528 18-174 (212)
241 1t11_A Trigger factor, TF; hel 98.6 2.6E-08 9E-13 101.5 5.2 84 168-262 160-245 (392)
242 3k9i_A BH0479 protein; putativ 98.6 5.5E-08 1.9E-12 81.3 6.1 85 460-545 2-89 (117)
243 1ouv_A Conserved hypothetical 98.6 5.8E-07 2E-11 86.8 14.4 91 449-544 111-213 (273)
244 1zu2_A Mitochondrial import re 98.6 1.6E-07 5.4E-12 82.4 9.2 72 459-530 13-94 (158)
245 3gw4_A Uncharacterized protein 98.6 5.9E-07 2E-11 82.1 13.5 110 396-513 63-178 (203)
246 1ihg_A Cyclophilin 40; ppiase 98.6 2.2E-07 7.4E-12 94.8 10.8 95 450-545 225-335 (370)
247 1dce_A Protein (RAB geranylger 98.6 3.3E-07 1.1E-11 98.7 12.7 137 393-544 22-171 (567)
248 3rjv_A Putative SEL1 repeat pr 98.5 2.1E-07 7.2E-12 86.9 9.6 110 406-528 18-137 (212)
249 2r5s_A Uncharacterized protein 98.5 2E-07 6.8E-12 84.0 8.5 115 395-510 36-172 (176)
250 2v5f_A Prolyl 4-hydroxylase su 98.5 8.7E-07 3E-11 72.5 11.4 82 400-489 6-87 (104)
251 3dra_A Protein farnesyltransfe 98.5 2.6E-07 9E-12 91.1 9.5 130 401-545 105-249 (306)
252 3dra_A Protein farnesyltransfe 98.5 7.9E-07 2.7E-11 87.7 12.9 117 399-530 67-194 (306)
253 1nzn_A CGI-135 protein, fissio 98.5 7.5E-07 2.6E-11 74.4 10.5 104 412-530 14-122 (126)
254 1hz4_A MALT regulatory protein 98.5 1.6E-06 5.4E-11 87.8 15.2 126 398-532 52-190 (373)
255 3bee_A Putative YFRE protein; 98.5 8.7E-07 3E-11 70.8 9.7 68 450-517 8-78 (93)
256 3q7a_A Farnesyltransferase alp 98.4 1.6E-06 5.4E-11 86.6 13.0 119 412-545 67-195 (349)
257 3dss_A Geranylgeranyl transfer 98.4 3.8E-06 1.3E-10 83.5 15.7 100 415-529 90-192 (331)
258 3ma5_A Tetratricopeptide repea 98.4 5.8E-07 2E-11 72.8 7.2 81 399-494 7-89 (100)
259 3dss_A Geranylgeranyl transfer 98.4 1.5E-06 5.3E-11 86.3 11.7 129 401-544 31-172 (331)
260 1klx_A Cysteine rich protein B 98.4 2.1E-06 7.3E-11 74.1 10.6 98 405-523 31-136 (138)
261 4f3v_A ESX-1 secretion system 98.3 8.1E-07 2.8E-11 85.9 8.3 128 402-546 105-237 (282)
262 3qou_A Protein YBBN; thioredox 98.3 8.3E-07 2.8E-11 87.0 7.8 113 398-510 150-283 (287)
263 2kat_A Uncharacterized protein 98.3 3.4E-06 1.2E-10 69.8 10.3 78 466-544 3-80 (115)
264 3q7a_A Farnesyltransferase alp 98.3 2.3E-06 7.8E-11 85.5 9.7 116 399-529 88-214 (349)
265 2ooe_A Cleavage stimulation fa 98.3 3.3E-06 1.1E-10 90.2 11.3 117 400-530 322-439 (530)
266 2xm6_A Protein corresponding t 98.2 7.5E-06 2.6E-10 86.5 12.1 78 448-527 363-451 (490)
267 3n71_A Histone lysine methyltr 98.2 5.8E-06 2E-10 87.1 10.6 113 396-515 348-468 (490)
268 3o48_A Mitochondria fission 1 98.2 1.2E-05 4.2E-10 67.1 10.2 82 450-531 42-127 (134)
269 1hz4_A MALT regulatory protein 98.2 1.7E-05 5.7E-10 80.2 13.5 138 396-544 11-162 (373)
270 2ooe_A Cleavage stimulation fa 98.1 5.7E-06 2E-10 88.3 10.2 106 399-519 272-393 (530)
271 1y8m_A FIS1; mitochondria, unk 98.1 2.8E-05 9.4E-10 65.9 11.6 81 450-530 41-125 (144)
272 3gty_X Trigger factor, TF; cha 98.1 2.3E-06 7.7E-11 88.4 5.9 88 52-159 154-241 (433)
273 1xi4_A Clathrin heavy chain; a 98.1 2.2E-05 7.6E-10 89.9 13.3 111 401-534 1197-1332(1630)
274 1klx_A Cysteine rich protein B 98.1 2.6E-05 8.8E-10 67.1 11.0 94 412-528 8-105 (138)
275 1b89_A Protein (clathrin heavy 98.0 1.3E-05 4.5E-10 82.1 9.6 108 401-533 124-258 (449)
276 2xm6_A Protein corresponding t 97.9 8.9E-05 3E-09 78.1 14.4 92 400-510 76-179 (490)
277 3e4b_A ALGK; tetratricopeptide 97.9 4.4E-05 1.5E-09 79.8 11.4 120 401-526 178-328 (452)
278 3ly7_A Transcriptional activat 97.9 0.00024 8.1E-09 70.9 15.8 114 402-516 199-344 (372)
279 3ffl_A Anaphase-promoting comp 97.9 0.00012 4E-09 63.9 11.4 118 401-526 22-165 (167)
280 4b4t_Q 26S proteasome regulato 97.9 6.1E-05 2.1E-09 77.5 11.7 120 395-514 51-207 (434)
281 1pc2_A Mitochondria fission pr 97.9 0.0001 3.5E-09 63.8 10.7 78 400-491 33-114 (152)
282 3u64_A Protein TP_0956; tetrat 97.8 3E-05 1E-09 74.3 7.5 88 415-515 179-273 (301)
283 3e4b_A ALGK; tetratricopeptide 97.8 0.00011 3.9E-09 76.7 11.4 75 448-528 283-366 (452)
284 4b4t_Q 26S proteasome regulato 97.7 7.3E-05 2.5E-09 76.9 9.5 101 401-510 137-237 (434)
285 1xi4_A Clathrin heavy chain; a 97.7 0.00014 4.7E-09 83.6 12.2 107 404-515 1054-1167(1630)
286 3mv2_B Coatomer subunit epsilo 97.6 0.00013 4.4E-09 71.4 8.4 100 404-521 181-292 (310)
287 3mv2_B Coatomer subunit epsilo 97.4 0.0005 1.7E-08 67.2 9.3 122 402-537 103-232 (310)
288 3bee_A Putative YFRE protein; 97.3 0.00037 1.3E-08 55.3 6.1 68 399-481 6-76 (93)
289 2ff4_A Probable regulatory pro 97.3 0.0033 1.1E-07 64.0 14.6 127 398-525 114-254 (388)
290 3qwp_A SET and MYND domain-con 97.3 0.00089 3E-08 69.2 10.2 93 396-495 326-426 (429)
291 3u64_A Protein TP_0956; tetrat 97.2 0.00071 2.4E-08 64.8 8.2 65 463-527 178-250 (301)
292 3qww_A SET and MYND domain-con 97.1 0.0013 4.4E-08 68.0 9.7 80 396-482 337-421 (433)
293 1nzn_A CGI-135 protein, fissio 96.9 0.0056 1.9E-07 50.9 9.5 45 447-491 73-117 (126)
294 3o48_A Mitochondria fission 1 96.8 0.012 4E-07 49.2 10.7 75 403-491 44-121 (134)
295 1y8m_A FIS1; mitochondria, unk 96.8 0.017 6E-07 48.8 11.8 75 402-490 42-119 (144)
296 1b89_A Protein (clathrin heavy 96.7 0.0038 1.3E-07 63.9 9.0 141 393-535 142-301 (449)
297 4e6h_A MRNA 3'-END-processing 96.5 0.054 1.8E-06 59.1 16.7 145 403-548 382-535 (679)
298 3gty_X Trigger factor, TF; cha 96.3 0.0067 2.3E-07 62.4 7.7 72 168-262 154-227 (433)
299 3ffl_A Anaphase-promoting comp 96.3 0.016 5.5E-07 50.4 8.8 94 398-492 62-165 (167)
300 4e6h_A MRNA 3'-END-processing 96.2 0.018 6E-07 63.0 10.8 134 401-549 436-573 (679)
301 3ly7_A Transcriptional activat 95.9 0.054 1.9E-06 53.9 11.6 123 416-544 194-337 (372)
302 4gns_B Protein CSD3, chitin bi 95.7 0.067 2.3E-06 58.6 12.4 59 450-508 339-397 (754)
303 4h7y_A Dual specificity protei 95.7 0.17 5.7E-06 43.1 11.9 94 416-517 36-129 (161)
304 3mv2_A Coatomer subunit alpha; 95.2 0.13 4.4E-06 49.7 11.1 118 399-516 114-241 (325)
305 3txn_A 26S proteasome regulato 94.7 0.28 9.7E-06 49.4 12.6 98 404-510 104-209 (394)
306 3mkr_B Coatomer subunit alpha; 94.6 1.9 6.5E-05 41.6 17.5 114 402-515 105-231 (320)
307 3kae_A CDC27, possible protein 94.6 0.39 1.3E-05 41.6 11.2 97 403-519 37-151 (242)
308 2uy1_A Cleavage stimulation fa 94.5 0.55 1.9E-05 49.1 14.9 121 400-522 214-360 (493)
309 1zbp_A Hypothetical protein VP 94.5 0.27 9.2E-06 46.3 11.0 70 456-525 5-74 (273)
310 4b4t_R RPN7, 26S proteasome re 93.8 0.18 6.1E-06 51.8 9.3 99 401-511 133-237 (429)
311 1ya0_A SMG-7 transcript varian 92.9 0.48 1.6E-05 49.4 10.6 81 448-528 152-232 (497)
312 2uy1_A Cleavage stimulation fa 92.8 0.47 1.6E-05 49.6 10.7 128 401-549 288-416 (493)
313 3txn_A 26S proteasome regulato 91.2 1.5 5.3E-05 44.0 11.8 132 400-531 20-191 (394)
314 2v6y_A AAA family ATPase, P60 90.4 0.57 1.9E-05 35.7 6.0 41 391-431 2-43 (83)
315 4b4t_P 26S proteasome regulato 89.3 4.9 0.00017 41.1 14.0 105 398-511 136-247 (445)
316 2cpt_A SKD1 protein, vacuolar 89.1 1.1 3.7E-05 36.6 7.0 44 388-431 6-50 (117)
317 1zbp_A Hypothetical protein VP 89.0 1.7 5.8E-05 40.9 9.2 63 406-483 4-66 (273)
318 4gns_B Protein CSD3, chitin bi 88.8 0.43 1.5E-05 52.2 5.7 60 400-474 338-397 (754)
319 4g26_A Pentatricopeptide repea 87.1 3.1 0.00011 43.3 11.0 102 401-516 107-211 (501)
320 3mkq_B Coatomer subunit alpha; 86.6 2.6 8.7E-05 37.1 8.3 82 399-508 34-115 (177)
321 1ya0_A SMG-7 transcript varian 85.9 2.5 8.6E-05 43.9 9.3 81 399-494 152-232 (497)
322 2dl1_A Spartin; SPG20, MIT, st 85.5 4.9 0.00017 32.3 8.6 74 394-467 17-97 (116)
323 2w2u_A Hypothetical P60 katani 85.2 1.7 5.7E-05 33.0 5.6 43 389-431 8-51 (83)
324 2v6x_A Vacuolar protein sortin 84.0 2.5 8.5E-05 32.2 6.2 42 390-431 4-45 (85)
325 1wfd_A Hypothetical protein 15 83.7 4.3 0.00015 31.5 7.5 37 395-431 11-47 (93)
326 4b4t_S RPN3, 26S proteasome re 83.0 1.7 5.7E-05 45.1 6.3 69 447-515 230-303 (523)
327 4g26_A Pentatricopeptide repea 82.6 7.5 0.00026 40.4 11.4 74 450-523 107-183 (501)
328 2ff4_A Probable regulatory pro 82.3 3.9 0.00013 41.0 8.7 78 454-531 121-220 (388)
329 3mkq_A Coatomer beta'-subunit; 81.8 3.6 0.00012 45.2 9.1 24 451-474 684-707 (814)
330 4a5x_A MITD1, MIT domain-conta 81.4 5.8 0.0002 30.2 7.3 35 397-431 14-48 (86)
331 4fhn_B Nucleoporin NUP120; pro 80.1 3.8 0.00013 47.5 8.8 106 403-508 846-964 (1139)
332 3t5v_B Nuclear mRNA export pro 78.6 3.9 0.00013 41.8 7.3 103 413-515 140-254 (455)
333 4b4t_R RPN7, 26S proteasome re 76.8 2.9 0.0001 42.6 5.8 76 450-525 133-213 (429)
334 3mkq_B Coatomer subunit alpha; 76.5 5.2 0.00018 35.1 6.4 46 459-509 16-61 (177)
335 1wy6_A Hypothetical protein ST 76.5 9 0.00031 32.0 7.3 61 451-511 93-154 (172)
336 2crb_A Nuclear receptor bindin 76.2 4.7 0.00016 30.8 5.2 37 396-432 12-48 (97)
337 4b4t_P 26S proteasome regulato 75.8 20 0.00068 36.5 11.8 87 447-533 136-231 (445)
338 3mkq_A Coatomer beta'-subunit; 75.2 7.3 0.00025 42.7 9.0 49 455-508 701-762 (814)
339 3lpz_A GET4 (YOR164C homolog); 75.0 54 0.0018 31.8 13.8 110 393-505 29-159 (336)
340 3ax2_A Mitochondrial import re 70.6 6 0.0002 29.0 4.5 40 392-431 10-49 (73)
341 3spa_A Mtrpol, DNA-directed RN 70.5 34 0.0011 38.7 12.4 104 401-515 129-236 (1134)
342 3kae_A CDC27, possible protein 68.7 46 0.0016 28.9 10.2 53 452-509 37-89 (242)
343 4a5x_A MITD1, MIT domain-conta 68.3 36 0.0012 25.7 8.7 15 457-471 25-39 (86)
344 2dl1_A Spartin; SPG20, MIT, st 68.0 9.6 0.00033 30.6 5.5 66 462-535 17-86 (116)
345 1om2_A Protein (mitochondrial 67.2 14 0.00049 28.5 6.2 41 391-431 12-52 (95)
346 4h7y_A Dual specificity protei 66.6 22 0.00075 30.3 7.7 72 410-497 71-142 (161)
347 2w2u_A Hypothetical P60 katani 66.2 27 0.00093 26.2 7.6 23 453-475 24-46 (83)
348 2v6y_A AAA family ATPase, P60 65.6 31 0.0011 25.8 7.9 15 501-515 37-51 (83)
349 2wpv_A GET4, UPF0363 protein Y 64.4 99 0.0034 29.6 13.1 107 397-506 31-158 (312)
350 3eab_A Spastin; spastin, MIT, 64.3 34 0.0012 26.0 7.7 66 396-461 13-85 (89)
351 2cpt_A SKD1 protein, vacuolar 62.1 60 0.0021 26.1 10.1 22 501-522 44-65 (117)
352 3ax2_A Mitochondrial import re 60.5 23 0.00079 25.9 6.0 37 487-523 22-58 (73)
353 1qsa_A Protein (soluble lytic 60.4 13 0.00045 39.7 6.7 56 455-510 292-347 (618)
354 2yin_A DOCK2, dedicator of cyt 60.4 15 0.00053 37.2 6.9 97 401-497 37-141 (436)
355 2crb_A Nuclear receptor bindin 58.0 60 0.0021 24.8 10.0 26 484-509 17-42 (97)
356 2vkj_A TM1634; membrane protei 57.9 47 0.0016 25.1 7.2 33 397-429 51-83 (106)
357 3t5x_A PCI domain-containing p 57.3 21 0.00071 32.0 6.5 37 447-483 13-49 (203)
358 1wfd_A Hypothetical protein 15 55.5 67 0.0023 24.5 9.1 15 501-515 41-55 (93)
359 2wb7_A PT26-6P; extra chromoso 53.7 47 0.0016 33.8 8.8 16 416-431 449-464 (526)
360 4b4t_S RPN3, 26S proteasome re 51.7 75 0.0026 32.8 10.3 105 397-516 268-378 (523)
361 2cfu_A SDSA1; SDS-hydrolase, l 49.9 29 0.001 37.3 7.4 49 483-531 450-498 (658)
362 2cfu_A SDSA1; SDS-hydrolase, l 48.0 21 0.00072 38.4 5.8 47 451-497 452-498 (658)
363 2v6x_A Vacuolar protein sortin 47.8 84 0.0029 23.4 8.2 15 460-474 25-39 (85)
364 3spa_A Mtrpol, DNA-directed RN 46.9 1.2E+02 0.004 34.4 11.5 74 450-523 129-208 (1134)
365 4gq2_M Nucleoporin NUP120; bet 46.0 26 0.0009 39.5 6.5 49 457-509 819-867 (950)
366 2rpa_A Katanin P60 ATPase-cont 45.4 90 0.0031 23.0 8.0 26 485-510 15-40 (78)
367 2ijq_A Hypothetical protein; s 45.3 82 0.0028 26.9 8.0 68 402-476 35-103 (161)
368 4gq2_M Nucleoporin NUP120; bet 45.3 58 0.002 36.7 9.2 26 403-428 844-869 (950)
369 2npm_A 14-3-3 domain containin 43.3 61 0.0021 30.1 7.4 54 415-476 172-226 (260)
370 2br9_A 14-3-3E, 14-3-3 protein 43.1 57 0.002 29.8 7.1 55 415-476 146-201 (234)
371 3qnk_A Putative lipoprotein; a 42.7 1.6E+02 0.0055 30.3 11.6 48 464-511 153-211 (517)
372 2g0u_A Type III secretion syst 42.7 1.1E+02 0.0037 23.3 7.3 44 498-541 32-75 (92)
373 2vkj_A TM1634; membrane protei 42.3 1.1E+02 0.0037 23.1 7.8 37 482-519 53-89 (106)
374 1om2_A Protein (mitochondrial 41.1 34 0.0012 26.4 4.4 36 487-522 25-60 (95)
375 3ubw_A 14-3-3E, 14-3-3 protein 40.2 68 0.0023 29.8 7.1 55 415-476 172-227 (261)
376 3uzd_A 14-3-3 protein gamma; s 40.2 68 0.0023 29.6 7.1 55 415-476 147-202 (248)
377 2ijq_A Hypothetical protein; s 39.2 1.4E+02 0.0046 25.5 8.4 58 453-510 37-103 (161)
378 1o9d_A 14-3-3-like protein C; 39.2 70 0.0024 29.7 7.1 54 415-475 151-205 (260)
379 3t5x_A PCI domain-containing p 39.0 60 0.0021 28.9 6.5 34 482-515 14-47 (203)
380 2ca5_A MXIH; transport protein 38.5 1E+02 0.0034 23.0 6.3 38 498-535 26-63 (85)
381 4fhn_B Nucleoporin NUP120; pro 35.4 30 0.001 39.9 4.9 51 455-509 819-869 (1139)
382 2o8p_A 14-3-3 domain containin 34.7 81 0.0028 28.6 6.5 71 399-476 120-196 (227)
383 2ymb_A MITD1, MIT domain-conta 34.6 8.3 0.00028 35.9 0.0 39 394-432 18-56 (257)
384 2rkl_A Vacuolar protein sortin 34.4 64 0.0022 21.9 4.3 40 391-430 12-51 (53)
385 3iqu_A 14-3-3 protein sigma; s 34.4 94 0.0032 28.4 7.0 71 399-476 123-204 (236)
386 2oo2_A Hypothetical protein AF 33.9 91 0.0031 23.5 5.6 38 392-429 28-65 (86)
387 2pmr_A Uncharacterized protein 32.6 1E+02 0.0034 23.3 5.7 37 392-428 32-68 (87)
388 3myv_A SUSD superfamily protei 32.1 83 0.0028 31.9 7.1 47 464-510 164-218 (454)
389 2cwy_A Hypothetical protein TT 31.4 1.6E+02 0.0056 22.4 7.0 63 403-476 5-67 (94)
390 3otn_A SUSD superfamily protei 31.0 2.1E+02 0.0071 29.1 10.0 48 464-511 160-226 (482)
391 3mcx_A SUSD superfamily protei 29.5 1E+02 0.0035 31.4 7.4 49 464-512 176-232 (477)
392 3efz_A 14-3-3 protein; 14-3-3, 29.3 91 0.0031 29.0 6.1 56 415-477 168-226 (268)
393 3kez_A Putative sugar binding 29.0 94 0.0032 31.5 6.9 47 464-510 170-224 (461)
394 3i4g_A SUSD-like carbohydrate 29.0 1.9E+02 0.0064 29.9 9.3 48 464-511 167-227 (528)
395 3lew_A SUSD-like carbohydrate 27.5 1.1E+02 0.0037 31.5 7.1 48 464-511 174-232 (495)
396 2yhe_A SEC-alkyl sulfatase; hy 32.9 13 0.00046 40.0 0.0 50 451-500 464-513 (668)
397 3myv_A SUSD superfamily protei 25.8 78 0.0027 32.1 5.6 55 415-476 164-218 (454)
398 3lxu_X Tripeptidyl-peptidase 2 25.5 4E+02 0.014 31.0 11.6 90 439-529 1232-1330(1354)
399 2rpa_A Katanin P60 ATPase-cont 25.3 2E+02 0.007 21.1 7.0 39 389-431 6-44 (78)
400 3dza_A Uncharacterized putativ 24.7 3.5E+02 0.012 23.6 11.5 105 397-510 33-178 (191)
401 3re2_A Predicted protein; meni 24.3 2.6E+02 0.0088 27.3 8.2 63 464-528 280-348 (472)
402 2wpv_A GET4, UPF0363 protein Y 24.0 4.7E+02 0.016 24.8 14.4 124 400-532 14-150 (312)
403 3r9m_A BRO1 domain-containing 23.9 5.1E+02 0.017 25.2 11.6 160 395-556 110-343 (376)
404 3ckc_A SUSD; TPR repeat, carbo 23.6 4.5E+02 0.015 26.7 11.1 47 464-510 169-231 (527)
405 3kez_A Putative sugar binding 23.6 68 0.0023 32.6 4.6 54 416-476 171-224 (461)
406 3jys_A SUSD superfamily protei 22.7 4.8E+02 0.016 26.5 11.0 94 417-510 94-222 (499)
407 3lew_A SUSD-like carbohydrate 22.6 70 0.0024 32.9 4.5 58 415-476 174-231 (495)
408 1lqb_D HIF-1 alpha, hypoxia-in 21.9 36 0.0012 20.2 1.2 11 1-11 20-30 (34)
409 3htx_A HEN1; HEN1, small RNA m 21.6 2.5E+02 0.0084 31.1 8.5 58 52-113 560-649 (950)
410 2wm9_A Dedicator of cytokinesi 21.5 82 0.0028 31.7 4.6 100 401-501 13-140 (428)
411 3c3r_A Programmed cell death 6 21.3 4.9E+02 0.017 25.4 10.3 23 518-540 318-340 (380)
412 2zan_A Vacuolar protein sortin 20.8 21 0.00071 36.4 0.0 38 394-431 6-43 (444)
413 3mcx_A SUSD superfamily protei 20.3 72 0.0025 32.5 4.0 56 415-477 176-231 (477)
No 1
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=3.7e-66 Score=526.92 Aligned_cols=355 Identities=81% Similarity=1.270 Sum_probs=222.4
Q ss_pred cCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccc
Q 008540 27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106 (562)
Q Consensus 27 ~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~G 106 (562)
+++++.+++++|++|+++++|+|+..|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|
T Consensus 1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G 80 (356)
T 3jxv_A 1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG 80 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence 46788899999999999999999778999999999999999999999999987789999999999999999999999999
Q ss_pred cEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCC
Q 008540 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186 (562)
Q Consensus 107 e~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g 186 (562)
++++|+|||++|||+.+.++.||++++|+|+|+|++|..+.++..++.+.++++++|.|+.+|..|+.|++||+++++||
T Consensus 81 e~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg 160 (356)
T 3jxv_A 81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG 160 (356)
T ss_dssp -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred CEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceee
Q 008540 187 MVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266 (562)
Q Consensus 187 ~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~ 266 (562)
++|+++.+..|.+|.+++++||+.+|.+|++||+++|.|||+++||+.|.+.......|||+++|+|+|+|++|....++
T Consensus 161 t~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv 240 (356)
T 3jxv_A 161 TVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240 (356)
T ss_dssp CEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEE
T ss_pred CEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999998766666679999999999999999999999
Q ss_pred cCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEE
Q 008540 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346 (562)
Q Consensus 267 ~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v 346 (562)
+.|++++++++++|.|..+|..|+.|+|||.+++.||++|+++.. .+..|++|.+|.+.+|+||+.+|..|++||++.|
T Consensus 241 ~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v 319 (356)
T 3jxv_A 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV 319 (356)
T ss_dssp STTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred ccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence 999999999999999988999999999999999999999998753 4578999999999999999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (562)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~ 383 (562)
.|+|.++||+.+... ...||++++++|+|+|.++.+
T Consensus 320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence 999999999886532 256899999999999999874
No 2
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=8.4e-57 Score=477.05 Aligned_cols=386 Identities=36% Similarity=0.637 Sum_probs=336.3
Q ss_pred cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (562)
Q Consensus 151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp 226 (562)
.++++.++++++|.|...|..||.|+|||++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 678999999999999777999999999999999999999986 6999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEE
Q 008540 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF 306 (562)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~ 306 (562)
|+++||+.|.+ +.|||+++|+|+|+|++|.. .++..|++++++++++|.|..+|..|+.|+|||.+++ +|++|
T Consensus 109 ~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f 181 (457)
T 1kt0_A 109 PEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMF 181 (457)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEE
T ss_pred hHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEE
Confidence 99999998875 67999999999999999987 5778899999999999999889999999999999999 89999
Q ss_pred EecCCCCCcccEEEEcCCc---chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540 307 VKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (562)
Q Consensus 307 ~~~~~~~~~~~~~~~lg~~---~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~ 383 (562)
+++ +++|.+|++ .++++|+.++..|++||++.+.++|.++|+..+... ..||+++.+.|.++|..+.+
T Consensus 182 ~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~ 252 (457)
T 1kt0_A 182 DCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK 252 (457)
T ss_dssp EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEEEEEEC
T ss_pred ecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhhhhccc
Confidence 863 489999987 489999999999999999999999999999988653 46899999999999999999
Q ss_pred ccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 384 ~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
....|.+..+++...+..++.+|+.++++|+|.+|+..|++|+.+.+.......++.......+..+|+|+|.||+++++
T Consensus 253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 332 (457)
T 1kt0_A 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE 332 (457)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999887777778888888999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
|++|+.+|++||+++|+++++||++|.+|+.+++|++|+.+|++|++++|++..++..++.+..++.+..++++.+|++|
T Consensus 333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 008540 544 FAKMTEPKE 552 (562)
Q Consensus 544 f~~~~~~~~ 552 (562)
|+++....+
T Consensus 413 f~k~~~~d~ 421 (457)
T 1kt0_A 413 FKKFAEQDA 421 (457)
T ss_dssp ---------
T ss_pred Hhhhhhccc
Confidence 998866554
No 3
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=100.00 E-value=1e-43 Score=376.55 Aligned_cols=376 Identities=31% Similarity=0.493 Sum_probs=274.6
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
+++|++|+++++|+|...|..||.|+|||++++.||++|++|+.++.|+.|.+|.+++|+||+++|.||++|++++|+||
T Consensus 29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~ 108 (457)
T 1kt0_A 29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK 108 (457)
T ss_dssp ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence 68999999999999955599999999999999989999999988778999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccc
Q 008540 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG 194 (562)
Q Consensus 115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~ 194 (562)
|++|||..+.++.||++++++|+|+|++|... ++..++.++++++..|.|+..|..|+.|++||++++ +|++|++ .+
T Consensus 109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~-~~ 185 (457)
T 1kt0_A 109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDC-RD 185 (457)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEE-EE
T ss_pred hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEec-Cc
Confidence 99999999998899999999999999999875 566888999999999999999999999999999999 8888886 57
Q ss_pred eEEEecCC---CCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcc
Q 008540 195 VEFTVKDG---HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271 (562)
Q Consensus 195 ~~~~~g~~---~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~ 271 (562)
..|.+|.| .++++|+.|+..|+.|+++.|.++|.++|+..|.+ ...|||++.+.|.+.+.+|.........
T Consensus 186 ~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~----~~~ip~~~~l~y~~~l~~~~~A~~~~~~-- 259 (457)
T 1kt0_A 186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKESWEM-- 259 (457)
T ss_dssp EEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG----GGTBCTTCCEEEEEEEEEEECCCCGGGS--
T ss_pred eEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc----ccCCCCCCEEEEEhhhhhcccCcchhhc--
Confidence 89999976 48999999999999999999999999999988864 2358999999999999987652211100
Q ss_pred eEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEEEEcC
Q 008540 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAP 350 (562)
Q Consensus 272 v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v~i~~ 350 (562)
.+. ..|.. . ..+..-|.. -+..|+. .-+..++.++... +
T Consensus 260 ----~~~-----~~~~~---a----~~~~~~G~~-------------~~~~g~~~~A~~~y~~Al~~~-----------p 299 (457)
T 1kt0_A 260 ----DTK-----EKLEQ---A----AIVKEKGTV-------------YFKGGKYMQAVIQYGKIVSWL-----------E 299 (457)
T ss_dssp ----CHH-----HHHHH---H----HHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHH-----------T
T ss_pred ----CHH-----HHHHH---H----HHHHHHHHH-------------HHhCCCHHHHHHHHHHHHHHh-----------c
Confidence 000 00000 0 000000000 0111221 1233344443211 1
Q ss_pred CCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008540 351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (562)
Q Consensus 351 ~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~ 430 (562)
....+ .. ....+.....+..+.++|.++++.++|++|+..|++|+.+.|
T Consensus 300 -----------------~~~~~---------~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 300 -----------------MEYGL---------SE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp -----------------TCCSC---------CH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -----------------ccccC---------Ch-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 00000 00 000122334467889999999999999999999999999987
Q ss_pred hcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008540 431 YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505 (562)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~ 505 (562)
.+. .+|+++|.+|+++++|++|+.+|+++++++|++..+++.++.++..++++++|...+
T Consensus 349 ~~~---------------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 349 ANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp TCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643 348999999999999999999999999999999999999999999999999887543
No 4
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=3e-40 Score=322.68 Aligned_cols=223 Identities=44% Similarity=0.760 Sum_probs=205.3
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
+++||+|+++++|+|...|..||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 68999999999999955599999999999999999999999987678999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeEeeeccccc--cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~--~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
|++|||+.+.++.||++++++|+|+|+++... ++. .++++.++++++|+|...+..||.|++||++++ +|++|++
T Consensus 129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~- 205 (280)
T 1q1c_A 129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ- 205 (280)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-
T ss_pred cHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-
Confidence 99999999988899999999999999999864 443 788999999999999878999999999999998 8888887
Q ss_pred cceEEEecCCC---CcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccce
Q 008540 193 DGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264 (562)
Q Consensus 193 ~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~ 264 (562)
.++.|.+|.++ +++||+++|.+|++||++.|.|||+++||+.+.+. ..|||+++|+|+|+|+++....
T Consensus 206 ~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~----~~IP~~~~l~f~V~L~~i~~~~ 276 (280)
T 1q1c_A 206 RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAK 276 (280)
T ss_dssp EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG----GTBCTTCCEEEEEEEEEEECCC
T ss_pred CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc----CccCCCCeEEEEEEEEEEeCCC
Confidence 68999999987 59999999999999999999999999999887641 2599999999999999987643
No 5
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=100.00 E-value=4e-37 Score=312.81 Aligned_cols=276 Identities=39% Similarity=0.721 Sum_probs=257.2
Q ss_pred eeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcc---hhhHHHHHHhccCC
Q 008540 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKK 340 (562)
Q Consensus 264 ~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~---v~~gle~~l~~M~~ 340 (562)
.+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++||++ |++|.+|.+. ++++|+.+|..|++
T Consensus 19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~~ 90 (336)
T 1p5q_A 19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRMEK 90 (336)
T ss_dssp ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCCC
Confidence 5567799999999999999878999999999999999 89999864 7999999886 58999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHH
Q 008540 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420 (562)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~ 420 (562)
||++.+.++|+++||..+... ..||+++.+.|.++|.++.+....|.+..+.....+..+..+|+.+++.|+|++|+.
T Consensus 91 Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~ 168 (336)
T 1p5q_A 91 GEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALL 168 (336)
T ss_dssp TCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999988653 258999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008540 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500 (562)
Q Consensus 421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~ 500 (562)
.|++|+.+.|.......+...........+++|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|++++
T Consensus 169 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 248 (336)
T 1p5q_A 169 QYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248 (336)
T ss_dssp HHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999998876667777888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549 (562)
Q Consensus 501 A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~ 549 (562)
|+.+|++|++++|++..++..++.+...+.+..++++.+|++||+++..
T Consensus 249 A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999987643
No 6
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=100.00 E-value=6.9e-38 Score=318.66 Aligned_cols=277 Identities=34% Similarity=0.532 Sum_probs=212.4
Q ss_pred CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecC-CcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEE
Q 008540 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL 346 (562)
Q Consensus 269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~-g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v 346 (562)
+.++.++|+++|.|. .|..|+.|+|||.+++.+ |++|+++.. ++.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus 48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~ 124 (338)
T 2if4_A 48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124 (338)
T ss_dssp ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence 567999999999995 899999999999999985 999998642 468999999999 899999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCccEEEEEEEeeeeec---cccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHH
Q 008540 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE---KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE 423 (562)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~---~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~ 423 (562)
+|++.++||..+... .+.||+++++.|.++|..+... ...|.++.+++++.+..++.+|+.+++.|+|.+|+..|+
T Consensus 125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~ 203 (338)
T 2if4_A 125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE 203 (338)
T ss_dssp EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999987632 2469999999999999988764 347889999999999999999999999999999999999
Q ss_pred HHHHHhhhcC--CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008540 424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501 (562)
Q Consensus 424 ~al~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A 501 (562)
+|+.+.+.+. ............++..+|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|
T Consensus 204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A 283 (338)
T 2if4_A 204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA 283 (338)
T ss_dssp HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999987643 12223334455566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549 (562)
Q Consensus 502 ~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~ 549 (562)
+.+|++|++++|++..++..|..+..+.....++++++|++||+....
T Consensus 284 ~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHHHTTC---------------------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999888888888889999999976543
No 7
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A
Probab=100.00 E-value=3.6e-37 Score=313.38 Aligned_cols=221 Identities=38% Similarity=0.685 Sum_probs=206.5
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
.+.++.++++++|.|+..|..||.|.|||++++.||++|+++ .++.|.+|.+++++||+.||.+|++||+++|+||
T Consensus 125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~ 200 (356)
T 3jxv_A 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200 (356)
T ss_dssp SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence 568999999999999999999999999999999999999988 4799999999999999999999999999999999
Q ss_pred CCCccCCCCCCC-----CCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEe
Q 008540 115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV 189 (562)
Q Consensus 115 ~~~~yg~~~~~~-----~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~ 189 (562)
|+++||+.+.++ .||+++.|.|+|+|++|..+.++..+..+.++++++|.|+..|..||.|++||++++.+|++|
T Consensus 201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f 280 (356)
T 3jxv_A 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF 280 (356)
T ss_dssp GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence 999999998764 699999999999999999988999999999999999999999999999999999999999999
Q ss_pred ecc-----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540 190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262 (562)
Q Consensus 190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (562)
+++ +|+.|.+|.+++++||+++|.+|++||++.|.|||++|||+.+... ...||||++|+|+|+|++|..
T Consensus 281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~~ 355 (356)
T 3jxv_A 281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFVK 355 (356)
T ss_dssp EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEEC
T ss_pred eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEEc
Confidence 865 6899999999999999999999999999999999999999876421 146899999999999999853
No 8
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A
Probab=100.00 E-value=2.5e-36 Score=294.90 Aligned_cols=223 Identities=37% Similarity=0.671 Sum_probs=203.0
Q ss_pred cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (562)
Q Consensus 151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp 226 (562)
.++++.++++++|.|...|..||.|++||++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus 49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip 128 (280)
T 1q1c_A 49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK 128 (280)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence 678999999999999777999999999999999999999986 6899999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeec--CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCc
Q 008540 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT 304 (562)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~ 304 (562)
|++|||+.|.+ +.|||+++|+|+|+|++|.. .++. .|+++.++++++|.|...|..|+.|+|||.+++ +|+
T Consensus 129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~ 201 (280)
T 1q1c_A 129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK 201 (280)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence 99999998875 57999999999999999986 5666 789999999999999878999999999999998 899
Q ss_pred EEEecCCCCCcccEEEEcCCcc---hhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540 305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (562)
Q Consensus 305 ~~~~~~~~~~~~~~~~~lg~~~---v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (562)
+|++ .+++|.+|.+. +|+||+.+|.+|++||++.|.||++|+||..+... ..||+++++.|+|+|.++
T Consensus 202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i 272 (280)
T 1q1c_A 202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF 272 (280)
T ss_dssp EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence 9975 37999999997 59999999999999999999999999999876542 259999999999999999
Q ss_pred eecccccc
Q 008540 382 EKEKESWD 389 (562)
Q Consensus 382 ~~~~~~~~ 389 (562)
...++.|+
T Consensus 273 ~~~~~~W~ 280 (280)
T 1q1c_A 273 EKAKESWE 280 (280)
T ss_dssp ECCCC---
T ss_pred eCCCCCCC
Confidence 99888884
No 9
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.93 E-value=3.6e-26 Score=232.15 Aligned_cols=291 Identities=20% Similarity=0.268 Sum_probs=173.3
Q ss_pred ccCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcC-CCEEeecCCCCCcEEEEcCCC-ccchhHHHHHccc
Q 008540 26 MKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGWDIGIKTM 103 (562)
Q Consensus 26 ~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~-g~~~~~t~~~~~p~~~~~g~~-~~~~g~~~~l~gm 103 (562)
.++.....++++|+.++++++|.| ..|..||.|+|||++++.+ |++|++++..+.|+.|.+|.+ ++|+||+++|.||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m 116 (338)
T 2if4_A 38 PKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASM 116 (338)
T ss_dssp CCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHC
T ss_pred CCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcC
Confidence 356666677899999999999999 7899999999999999985 999999976668999999999 8999999999999
Q ss_pred ccccEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEE
Q 008540 104 KKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEA 181 (562)
Q Consensus 104 ~~Ge~~~v~ip~~~~yg~~~~--~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~ 181 (562)
++|++++|+|||+++||..+. .+.||++++++|.|+|+++....+.. .
T Consensus 117 ~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------~----------------- 166 (338)
T 2if4_A 117 KSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------A----------------- 166 (338)
T ss_dssp CBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------T-----------------
T ss_pred CCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------c-----------------
Confidence 999999999999999999887 36789999999999887776421100 0
Q ss_pred EeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 182 RLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 182 ~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
.+-..+++-+.. .
T Consensus 167 ---------------------~~~~~~~~~~~~---------------------------------------------a- 179 (338)
T 2if4_A 167 ---------------------RSDMTVEERIGA---------------------------------------------A- 179 (338)
T ss_dssp ---------------------TTBCCHHHHHHH---------------------------------------------H-
T ss_pred ---------------------cccCCHHHHHHH---------------------------------------------H-
Confidence 000000000000 0
Q ss_pred cceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCC
Q 008540 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKK 340 (562)
Q Consensus 262 ~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~ 340 (562)
.. +..-|... +..|+. .-+..++.++.....
T Consensus 180 --~~---------------------------------~~~~g~~~-------------~~~g~~~~A~~~y~~Al~~~p~ 211 (338)
T 2if4_A 180 --DR---------------------------------RKMDGNSL-------------FKEEKLEEAMQQYEMAIAYMGD 211 (338)
T ss_dssp --HH---------------------------------HHHHHHHT-------------CSSSCCHHHHHHHHHHHHHSCH
T ss_pred --HH---------------------------------HHHHHHHH-------------HhcCCHHHHHHHHHHHHHHhcc
Confidence 00 00001100 001111 223345555432110
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHH
Q 008540 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420 (562)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~ 420 (562)
.. .|...+.. ......-....+.++|..+++.++|++|+.
T Consensus 212 ~~----------~~~~~~~~------------------------------~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 212 DF----------MFQLYGKY------------------------------QDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HH----------HHTCCHHH------------------------------HHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred ch----------hhhhcccH------------------------------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 00 00000000 000011122467899999999999999999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHH
Q 008540 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY-IQMADLD 499 (562)
Q Consensus 421 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~-~~l~~~~ 499 (562)
.|++|+.+.|.+. .+|+++|.+|+.+++|++|+.+++++++++|++..++..++.+. ...+..+
T Consensus 252 ~~~~al~~~p~~~---------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 252 HCNIVLTEEEKNP---------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999877543 34899999999999999999999999999999999999999984 4567788
Q ss_pred HHHHHHHHHHHhCCCCHH
Q 008540 500 LAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 500 ~A~~~~~~al~l~p~~~~ 517 (562)
.|...|++++.++|++..
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 999999999999998854
No 10
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.92 E-value=2.8e-24 Score=181.22 Aligned_cols=111 Identities=51% Similarity=0.889 Sum_probs=104.6
Q ss_pred eecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v 111 (562)
+++++|++|+++++|+| .. ++.||.|.|||++++.||++|++++..+.|+.|.+|.+++++||++||.+|++|++++|
T Consensus 2 ~~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v 80 (113)
T 1yat_A 2 EVIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARL 80 (113)
T ss_dssp EECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEE
T ss_pred CCCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEE
Confidence 35789999999999999 55 99999999999999999999999987668999999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 112 ~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
.|||++|||+.+.++.||++++++|+|+|++++
T Consensus 81 ~ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik 113 (113)
T 1yat_A 81 TIPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN 113 (113)
T ss_dssp EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred EECHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence 999999999999888899999999999998873
No 11
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.91 E-value=5e-24 Score=181.51 Aligned_cols=109 Identities=46% Similarity=0.832 Sum_probs=102.1
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCC-------CCcEEEEcCCCccchhHHHHHccccccc
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~-------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge 107 (562)
.|+|++|+++++|+|...|+.||.|.|||++++.||++|++++.. +.|+.|.+|.+++++||++||.+|++|+
T Consensus 2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 81 (119)
T 3kz7_A 2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE 81 (119)
T ss_dssp CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence 589999999999999657999999999999999999999999752 4799999999999999999999999999
Q ss_pred EEEEEecCCCccCCCCCCC-CCCCCCcEEEEEEEeEe
Q 008540 108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143 (562)
Q Consensus 108 ~~~v~ip~~~~yg~~~~~~-~ip~~~~l~~~vel~~~ 143 (562)
+++|+|||++|||+.+.++ .||++++|+|+|+|+++
T Consensus 82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence 9999999999999999864 79999999999999986
No 12
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.91 E-value=5.1e-24 Score=187.01 Aligned_cols=111 Identities=52% Similarity=0.906 Sum_probs=105.9
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
.++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++|+||+++|.+|++|++++|+||
T Consensus 33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 112 (144)
T 3o5e_A 33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 112 (144)
T ss_dssp CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence 68999999999999955899999999999999999999999987778999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540 115 PELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (562)
Q Consensus 115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~ 145 (562)
|++|||..+.++.||++++|+|+|+|++|..
T Consensus 113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg 143 (144)
T 3o5e_A 113 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143 (144)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence 9999999999889999999999999999863
No 13
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.91 E-value=4.1e-24 Score=184.00 Aligned_cols=111 Identities=52% Similarity=0.906 Sum_probs=105.4
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
.++|++|+++++|+|...|+.||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip 96 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK 96 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 78999999999999955789999999999999999999999976668999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540 115 PELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (562)
Q Consensus 115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~ 145 (562)
|++|||+.+.++.||++++|+|+|+|+++..
T Consensus 97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~ 127 (128)
T 3o5q_A 97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127 (128)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence 9999999999889999999999999999864
No 14
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.91 E-value=4.4e-24 Score=185.37 Aligned_cols=112 Identities=55% Similarity=0.988 Sum_probs=105.4
Q ss_pred cCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEec
Q 008540 35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP 114 (562)
Q Consensus 35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip 114 (562)
+++|++|+++++|+|...++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 68999999999999955799999999999999999999999976558999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540 115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (562)
Q Consensus 115 ~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~ 146 (562)
|++|||+.+.++.||++++++|+|+|+++...
T Consensus 92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~ 123 (135)
T 1r9h_A 92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE 123 (135)
T ss_dssp GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence 99999999988899999999999999999864
No 15
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.91 E-value=1.1e-23 Score=181.87 Aligned_cols=110 Identities=53% Similarity=0.881 Sum_probs=104.8
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
..+++|++|+++++|+| ..++.||.|+|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|.
T Consensus 24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~ 102 (133)
T 2y78_A 24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT 102 (133)
T ss_dssp EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 88999999999999999999999999876789999999999999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
|||++|||+.+.++.|||+++++|+|+|+++
T Consensus 103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV 133 (133)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence 9999999999988889999999999999874
No 16
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.90 E-value=1.3e-23 Score=175.32 Aligned_cols=107 Identities=50% Similarity=0.934 Sum_probs=100.2
Q ss_pred CeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCC
Q 008540 38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117 (562)
Q Consensus 38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~ 117 (562)
|++|+++++|+|...++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|.|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 78999999999944499999999999999999999999976557999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 118 AYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 118 ~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
|||+.+.++.||++++++|+|+|+++.
T Consensus 81 ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 107 (107)
T 2ppn_A 81 AYGATGHPGIIPPHATLVFDVELLKLE 107 (107)
T ss_dssp TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred ccCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence 999999888899999999999998863
No 17
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.90 E-value=2.9e-23 Score=188.67 Aligned_cols=130 Identities=29% Similarity=0.552 Sum_probs=114.5
Q ss_pred CCCCCCcCccCcceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCC-ccchh
Q 008540 18 DLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKG 95 (562)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~-~~~~g 95 (562)
-+++.+.+.+.......+++|++|+++++|+| ..|..||.|+|||++++. +|++|++++.++.|+.|.+|.+ ++++|
T Consensus 30 ~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G 108 (180)
T 2f4e_A 30 PSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG 108 (180)
T ss_dssp ----CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHH
T ss_pred CCCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHH
Confidence 33444555566677788999999999999999 789999999999999998 6999999987778999999999 99999
Q ss_pred HHHHHcccccccEEEEEecCCCccCCCCC--CCCCCCCCcEEEEEEEeEeeeccc
Q 008540 96 WDIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD 148 (562)
Q Consensus 96 ~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~--~~~ip~~~~l~~~vel~~~~~~~~ 148 (562)
|+++|.+|++|++++|+|||++|||..+. ++.||++++++|+|+|+++..+..
T Consensus 109 ~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e 163 (180)
T 2f4e_A 109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163 (180)
T ss_dssp HHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred HHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence 99999999999999999999999999986 468999999999999999986543
No 18
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.90 E-value=1.3e-23 Score=180.82 Aligned_cols=113 Identities=54% Similarity=0.963 Sum_probs=104.7
Q ss_pred eeeecCCCeEEE--EEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccE
Q 008540 31 EKEIGNQGLKKK--LVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108 (562)
Q Consensus 31 ~~~~~~~g~~~~--~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~ 108 (562)
.+..+++|++|+ ++++|+|...++.||.|+|+|++++.||++|++++..+.|+.|.+|.+++++||+++|.+|++|++
T Consensus 16 ~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~ 95 (130)
T 2lgo_A 16 TQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEK 95 (130)
T ss_dssp SCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEE
T ss_pred cceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCE
Confidence 345588999999 999999943399999999999999989999999987668999999999999999999999999999
Q ss_pred EEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 109 AVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 109 ~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
++|.|||++|||+.+.++.||++++++|+|+|+++
T Consensus 96 ~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 96 ALFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV 130 (130)
T ss_dssp EEEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred EEEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 99999999999999988889999999999999874
No 19
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=185.47 Aligned_cols=124 Identities=35% Similarity=0.639 Sum_probs=103.9
Q ss_pred CCCCcCccCccee--eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCCccchhH
Q 008540 20 PDDAPMMKVGEEK--EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGW 96 (562)
Q Consensus 20 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~~~~~g~ 96 (562)
+...|+..++.+. .++++|++|+++++|+| ..+..||.|+|||++++. +|++|++++.++.|+.|.+|.+++++||
T Consensus 7 ~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~ 85 (134)
T 3b7x_A 7 PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGM 85 (134)
T ss_dssp --CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHH
T ss_pred CCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHH
Confidence 3355666655554 34899999999999999 778899999999999998 6999999987668999999999999999
Q ss_pred HHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 97 DIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 97 ~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
++||.+|++|++++|+|||++|||+.+.++.||++++++|+|+|+++.
T Consensus 86 e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 86 ELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp HHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred HHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence 999999999999999999999999999888899999999999999875
No 20
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=176.59 Aligned_cols=111 Identities=38% Similarity=0.668 Sum_probs=103.9
Q ss_pred eecCCCeEEEEEEccc--CCCCCCCCCEEEEEEEEEEc-CCCEEeecCC--CCCcEEEEcCCCccchhHHHHHccccccc
Q 008540 33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~--G~~~~~~gd~V~v~y~~~~~-~g~~~~~t~~--~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge 107 (562)
+++++|++|+++++|+ | ..++.||.|.|||++++. ||++|++++. .+.|+.|.+|.+++++||++||.+|++|+
T Consensus 8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge 86 (125)
T 4dip_A 8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE 86 (125)
T ss_dssp GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence 4589999999999999 6 889999999999999998 9999999973 35899999999999999999999999999
Q ss_pred EEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540 108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (562)
Q Consensus 108 ~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~ 145 (562)
+++|.|||++|||+.+.+ .||++++|+|+|+|+++..
T Consensus 87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~ 123 (125)
T 4dip_A 87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN 123 (125)
T ss_dssp EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence 999999999999999965 8999999999999999875
No 21
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=185.90 Aligned_cols=115 Identities=24% Similarity=0.371 Sum_probs=97.9
Q ss_pred ecCCCeEEEEEEcccCCC-CCCCCCEEEEEEEEEEc--CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540 34 IGNQGLKKKLVKEGEGWD-TPENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 34 ~~~~g~~~~~~~~G~G~~-~~~~gd~V~v~y~~~~~--~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
++++||+|+++++|+|.. .+..||.|+|||++++. ||++||||+.+++|+.|.+|.+++|+||++||.+|++|++++
T Consensus 7 ~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~~ 86 (165)
T 2lkn_A 7 LREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIAQ 86 (165)
T ss_dssp HHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEEE
T ss_pred ccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceEE
Confidence 578999999999999932 23579999999999996 499999999999999999999999999999999999999999
Q ss_pred EEecCCCccCCC--------CCCCC-----------------------------CCCCCcEEEEEEEeEeeeccc
Q 008540 111 FTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKD 148 (562)
Q Consensus 111 v~ip~~~~yg~~--------~~~~~-----------------------------ip~~~~l~~~vel~~~~~~~~ 148 (562)
|+|||++|||.. ..... ++++++|+|+|||++|..+..
T Consensus 87 ~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e 161 (165)
T 2lkn_A 87 FLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT 161 (165)
T ss_dssp EECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred EEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence 999999999921 00011 233478999999999987654
No 22
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.89 E-value=3.4e-23 Score=185.14 Aligned_cols=112 Identities=43% Similarity=0.696 Sum_probs=104.9
Q ss_pred eeecCCCeEEEEEEcccCCCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540 32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
...+++|++|+++++|+| .. |..||.|+|||++++.||++|++++.++.|+.|.+| ++|+||+++|.+|++|++++
T Consensus 32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~ 108 (167)
T 1jvw_A 32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR 108 (167)
T ss_dssp EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence 456999999999999999 66 999999999999999999999999876689999995 89999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeeec
Q 008540 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146 (562)
Q Consensus 111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~~ 146 (562)
|+|||++|||+.+.++.||||++|+|+|+|+++...
T Consensus 109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~ 144 (167)
T 1jvw_A 109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG 144 (167)
T ss_dssp EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC
Confidence 999999999999988899999999999999999853
No 23
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.89 E-value=9.2e-23 Score=188.96 Aligned_cols=106 Identities=34% Similarity=0.616 Sum_probs=101.5
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
..+++|++|+++++|+| ..|..||.|+|||++++.||++|+++ +.|+.|.+| ++||||+++|.+|++|++++|+
T Consensus 113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~ 186 (219)
T 3oe2_A 113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186 (219)
T ss_dssp EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence 45899999999999999 88999999999999999999999999 589999998 8999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
|||++|||+.+.++.|||+++|+|+|+|+++.
T Consensus 187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence 99999999999888899999999999999886
No 24
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.89 E-value=2e-22 Score=173.86 Aligned_cols=112 Identities=46% Similarity=0.834 Sum_probs=101.4
Q ss_pred eecCCCeE-EEEEEcc---cCCCCCCCCCEEEEEEEEEE-cCCCEEeecCCCCCcEEEEcCCCccchhHHHHHccccccc
Q 008540 33 EIGNQGLK-KKLVKEG---EGWDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107 (562)
Q Consensus 33 ~~~~~g~~-~~~~~~G---~G~~~~~~gd~V~v~y~~~~-~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge 107 (562)
.++++|+. ++++++| +| ..++.||.|.|||++++ .||++|++++.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus 11 ~~~~~g~~~~~il~~G~~g~g-~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge 89 (129)
T 2vn1_A 11 ELTADGGVIKTILKKGDEGEE-NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE 89 (129)
T ss_dssp ECSTTSSEEEEEEECCCCSGG-GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred EECCCCCEEEEEEeCCCCCCC-CcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence 34666655 5689966 45 78999999999999999 6999999998766899999999999999999999999999
Q ss_pred EEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540 108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (562)
Q Consensus 108 ~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~ 145 (562)
+++|+|||++|||+.+.++.||++++++|+|+|+++..
T Consensus 90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence 99999999999999998888999999999999999875
No 25
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.89 E-value=1.1e-22 Score=189.42 Aligned_cols=132 Identities=47% Similarity=0.818 Sum_probs=113.8
Q ss_pred CCCCcCCCCCCCCcC----ccCc-ceeeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEE
Q 008540 11 NEMDADMDLPDDAPM----MKVG-EEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85 (562)
Q Consensus 11 ~~~~~~~~~~~~~~~----~~~~-~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~ 85 (562)
+.-|.....+++.-. .+.+ .....+++|++|+++++|+| ..|..||.|.|||++++.||++|++++..+.|+.|
T Consensus 73 ~~Tpk~L~~ed~d~I~~~~eq~Gg~t~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f 151 (209)
T 3uf8_A 73 DQTPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAF 151 (209)
T ss_dssp TCCTTTTTCCTTEEEEEECSCTTCCCCEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEE
T ss_pred CCChHHhhhcccccchhhccccccccccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEE
Confidence 334455555553322 2222 22456899999999999999 77999999999999999999999999877789999
Q ss_pred EcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCCcEEEEEEEeEe
Q 008540 86 TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143 (562)
Q Consensus 86 ~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~ 143 (562)
.+|.+++++||++||.+|++|++++|.|||++|||+.+.++.||++++|+|+|+|+++
T Consensus 152 ~lG~g~vi~G~eeaL~gM~~Ge~~~v~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 152 VLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV 209 (209)
T ss_dssp ETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred EeCCCccchhHHHHHhCCCCCCEEEEEECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence 9999999999999999999999999999999999999988889999999999999874
No 26
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.88 E-value=5e-23 Score=177.46 Aligned_cols=111 Identities=41% Similarity=0.706 Sum_probs=103.4
Q ss_pred eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcc------ccc
Q 008540 32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK 105 (562)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~g------m~~ 105 (562)
...+++|++|+++++|+| ..++.||.|+|||++++.||++|++++.+++|+.|.+|.+++++||+++|.| |++
T Consensus 7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~ 85 (129)
T 1u79_A 7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT 85 (129)
T ss_dssp CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence 456899999999999999 7899999999999999999999999986558999999999999999999999 999
Q ss_pred ccEEEEEecCCCccCCCCCC-----CCCCCCCcEEEEEEEeEe
Q 008540 106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW 143 (562)
Q Consensus 106 Ge~~~v~ip~~~~yg~~~~~-----~~ip~~~~l~~~vel~~~ 143 (562)
|++++|.|||++|||+.+.+ +.||++++++|+|+|+++
T Consensus 86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999999998863 479999999999999876
No 27
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.88 E-value=3.3e-22 Score=169.64 Aligned_cols=108 Identities=34% Similarity=0.563 Sum_probs=100.4
Q ss_pred eecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEE
Q 008540 33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110 (562)
Q Consensus 33 ~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~ 110 (562)
.++++| ++|+++++|+|. ..|+.||.|+|||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++|++++
T Consensus 8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~ 83 (118)
T 2awg_A 8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM 83 (118)
T ss_dssp ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence 456777 999999999993 27999999999999999899999984 799999999999999999999999999999
Q ss_pred EEecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 111 v~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
|.|||++|||+.+.++.||++++++|+|+|+++.
T Consensus 84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence 9999999999999888899999999999999875
No 28
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=177.25 Aligned_cols=109 Identities=34% Similarity=0.576 Sum_probs=101.8
Q ss_pred eecCCCe-EEEEEEcccCCC--CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEE
Q 008540 33 EIGNQGL-KKKLVKEGEGWD--TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (562)
Q Consensus 33 ~~~~~g~-~~~~~~~G~G~~--~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~ 109 (562)
.++++|+ +|+++++|+| . .|..||.|+|||++++.||++|+++ .|+.|.+|.+++|+||+++|.+|++|+++
T Consensus 38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~ 112 (157)
T 2jwx_A 38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA 112 (157)
T ss_dssp ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence 4578886 8999999999 5 8999999999999999999999984 79999999999999999999999999999
Q ss_pred EEEecCCCccCCCC-CCCCCCCCCcEEEEEEEeEeeec
Q 008540 110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV 146 (562)
Q Consensus 110 ~v~ip~~~~yg~~~-~~~~ip~~~~l~~~vel~~~~~~ 146 (562)
+|+|||++|||+.+ .++.||++++++|+|+|+++...
T Consensus 113 ~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~ 150 (157)
T 2jwx_A 113 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL 150 (157)
T ss_dssp EEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred EEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence 99999999999999 67789999999999999998864
No 29
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.88 E-value=1.9e-22 Score=187.21 Aligned_cols=111 Identities=36% Similarity=0.624 Sum_probs=104.6
Q ss_pred eeecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEE
Q 008540 32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111 (562)
Q Consensus 32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v 111 (562)
...+++|++|+++++|+| ..|..||.|+|||++++.||++|++++.++.|+.|.+| ++||||+++|.+|++|++++|
T Consensus 101 v~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v 177 (213)
T 1fd9_A 101 VVVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEI 177 (213)
T ss_dssp EEECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEE
T ss_pred cEECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEE
Confidence 456899999999999999 89999999999999999999999999876689999995 899999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCcEEEEEEEeEeee
Q 008540 112 TIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145 (562)
Q Consensus 112 ~ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~~ 145 (562)
+|||++|||+.+.++.||++++++|+|+|+++..
T Consensus 178 ~IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~ 211 (213)
T 1fd9_A 178 YVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK 211 (213)
T ss_dssp EECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred EECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence 9999999999998788999999999999999874
No 30
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.87 E-value=3.4e-22 Score=202.68 Aligned_cols=270 Identities=22% Similarity=0.286 Sum_probs=196.4
Q ss_pred cccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCC---CcchHHHHHhhccCCcEEEE
Q 008540 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLL 223 (562)
Q Consensus 147 ~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~v 223 (562)
.+++.++++.+++++.|.|...|..|+.|+|||++++ +|++|+++ |+.|.+|.|. ++++|+.||.+|+.|+++.+
T Consensus 19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l 96 (336)
T 1p5q_A 19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 96 (336)
T ss_dssp ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence 4567789999999999999778999999999999999 89999886 8999999886 58999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCC
Q 008540 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG 303 (562)
Q Consensus 224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g 303 (562)
.|||+++||..|.+. ..||+++++.|++.|.+|........ +.+. ..|.. ... +..-|
T Consensus 97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~~------~a~~-----~~p~~---a~~----~~~~g 154 (336)
T 1p5q_A 97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESWE------MNSE-----EKLEQ---STI----VKERG 154 (336)
T ss_dssp EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGGG------CCHH-----HHHHH---HHH----HHHHH
T ss_pred EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchhc------CCHH-----HHHHH---HHH----HHHHH
Confidence 999999999988741 25899999999999999865221110 0000 00000 000 00000
Q ss_pred cEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540 304 TVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (562)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~ 382 (562)
. .-+..|+. .-+..++.++... |....+ .
T Consensus 155 ~-------------~~~~~g~~~~A~~~y~~Al~~~----------------------------p~~~~~---------~ 184 (336)
T 1p5q_A 155 T-------------VYFKEGKYKQALLQYKKIVSWL----------------------------EYESSF---------S 184 (336)
T ss_dssp H-------------HHHHHTCHHHHHHHHHHHHHHT----------------------------TTCCCC---------C
T ss_pred H-------------HHHHCCCHHHHHHHHHHHHHHh----------------------------hccccC---------C
Confidence 0 00111221 1233344444221 110000 0
Q ss_pred eccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc
Q 008540 383 KEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462 (562)
Q Consensus 383 ~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~ 462 (562)
.....+.....+..+.++|..+++.|+|++|+..|++|+++.|.+. .+++++|.+|..++
T Consensus 185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g 244 (336)
T 1p5q_A 185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVN 244 (336)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHCC
Confidence 0001122334467889999999999999999999999999987643 34899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALE 510 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~ 510 (562)
+|++|+.+++++++++|++..+++.+|.++..++++++| ...|++++.
T Consensus 245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 556676664
No 31
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.87 E-value=7.6e-22 Score=184.45 Aligned_cols=108 Identities=49% Similarity=0.915 Sum_probs=101.7
Q ss_pred eecCCCeEEEEEEcccCCCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEE
Q 008540 33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112 (562)
Q Consensus 33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ 112 (562)
..+++|++|+++++|+| ..|..||.|+|||++++.||++|++++.++.|+.|.+| ++||||+++|.+|++|++++|+
T Consensus 117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~ 193 (224)
T 1q6h_A 117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV 193 (224)
T ss_dssp EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence 45899999999999999 88999999999999999999999999877789999996 8999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCcEEEEEEEeEee
Q 008540 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT 144 (562)
Q Consensus 113 ip~~~~yg~~~~~~~ip~~~~l~~~vel~~~~ 144 (562)
|||+++||+.+.++ ||++++++|+|+|+++.
T Consensus 194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~ik 224 (224)
T 1q6h_A 194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK 224 (224)
T ss_dssp ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred ECchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence 99999999999875 99999999999999873
No 32
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.87 E-value=6.1e-22 Score=178.36 Aligned_cols=154 Identities=29% Similarity=0.392 Sum_probs=132.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHH
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE 468 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~ 468 (562)
.++++..+..++++|+.+|++|+|..|+..|++|+.+++... ....+++.........+|+|+|.||+++++|++|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 457788999999999999999999999999999999966432 22345556667778889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 469 ~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
.+|+++|+++|+++++|+++|.+|..+|++++|+.+|++|++++|++. .+...+..+..++++..+++++.|++||+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998 88999999999999999999999999996
No 33
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=171.59 Aligned_cols=113 Identities=34% Similarity=0.539 Sum_probs=103.0
Q ss_pred eeecCCC-eEEEEEEcccCC-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEE
Q 008540 32 KEIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109 (562)
Q Consensus 32 ~~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~ 109 (562)
..++++| ++|+++++|+|. ..++.||.|+|||++++.||++|+++ .|+.|.+|.+++++||+++|.+|++|+++
T Consensus 11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~ 86 (135)
T 2d9f_A 11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA 86 (135)
T ss_dssp EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence 3456777 999999999992 28999999999999999999999984 79999999999999999999999999999
Q ss_pred EEEecCCCccCCCC-CCCCCCCCCcEEEEEEEeEeeeccc
Q 008540 110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD 148 (562)
Q Consensus 110 ~v~ip~~~~yg~~~-~~~~ip~~~~l~~~vel~~~~~~~~ 148 (562)
+|.|||++|||+.+ .++.||++++++|+|+|+++....+
T Consensus 87 ~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~ 126 (135)
T 2d9f_A 87 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD 126 (135)
T ss_dssp EEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred EEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence 99999999999998 6778999999999999999987544
No 34
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=157.69 Aligned_cols=96 Identities=52% Similarity=0.898 Sum_probs=90.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~ 130 (562)
..++.||.|+|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.+.++.||+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~ 83 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG 83 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence 67899999999999998899999999876689999999999999999999999999999999999999999998888999
Q ss_pred CCcEEEEEEEeEeeec
Q 008540 131 NATLQFDVELLSWTSV 146 (562)
Q Consensus 131 ~~~l~~~vel~~~~~~ 146 (562)
+++++|+|+|+++...
T Consensus 84 ~~~l~f~v~l~~v~~~ 99 (102)
T 2pbc_A 84 GATLVFEVELLKIERR 99 (102)
T ss_dssp TCCEEEEEEEEEEGGG
T ss_pred CCeEEEEEEEEEeccc
Confidence 9999999999998753
No 35
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1
Probab=99.83 E-value=3.1e-20 Score=161.07 Aligned_cols=118 Identities=32% Similarity=0.594 Sum_probs=100.9
Q ss_pred cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (562)
Q Consensus 151 ~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp 226 (562)
.++++.++++++|.|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus 12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip 91 (135)
T 1r9h_A 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR 91 (135)
T ss_dssp CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence 678999999999999767999999999999999999999986 7999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccceeec--CCcceEE
Q 008540 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIK 274 (562)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~~~~--~d~~v~k 274 (562)
|++|||+.|.+ +.|||+++|+|+|+|+++.. .++. .|++|+|
T Consensus 92 ~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k 135 (135)
T 1r9h_A 92 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTILR 135 (135)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC--------------
T ss_pred hHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence 99999998875 57999999999999999977 4666 6777765
No 36
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A
Probab=99.83 E-value=7e-20 Score=160.58 Aligned_cols=114 Identities=39% Similarity=0.619 Sum_probs=105.1
Q ss_pred eeec--CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCC
Q 008540 264 SEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341 (562)
Q Consensus 264 ~~~~--~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~G 341 (562)
+|++ .|++++++++++|.|..+|..|+.|+|||.+++.||++|+++. .++.|++|.+|.+.+|+||+.+|.+|++|
T Consensus 27 ~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~G 104 (144)
T 3o5e_A 27 EDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKG 104 (144)
T ss_dssp EECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCCBT
T ss_pred ccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCCCC
Confidence 5666 6899999999999997789999999999999999999999865 35789999999999999999999999999
Q ss_pred cEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (562)
Q Consensus 342 E~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~ 382 (562)
|++.|.|+|.++||+.+.. +.||++++|.|+|+|+++.
T Consensus 105 e~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik 142 (144)
T 3o5e_A 105 EICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 142 (144)
T ss_dssp CEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred CEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence 9999999999999998765 4799999999999999886
No 37
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.82 E-value=3.9e-19 Score=165.47 Aligned_cols=175 Identities=33% Similarity=0.478 Sum_probs=140.3
Q ss_pred EEEEEEeeeeeccccccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHH
Q 008540 373 HYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACN 451 (562)
Q Consensus 373 ~f~ieL~~~~~~~~~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~ 451 (562)
.....+..+.+.++.|.++.+++...+..+...|+.++..|+|++|+..|.+|+.+.+........ .......+...++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344556778889999999999999999999999999999999999999999999998876644332 2333455567889
Q ss_pred hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
+|+|.||+++++|++|+.+|++++.++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..+..+...+.+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 008540 532 YNKKEAKFYGNMFAKM 547 (562)
Q Consensus 532 ~~~~~~~~~~~~f~~~ 547 (562)
..+.++..|++||+.-
T Consensus 172 ~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 172 ARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHC-------------
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999854
No 38
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}
Probab=99.82 E-value=1.4e-19 Score=164.42 Aligned_cols=127 Identities=35% Similarity=0.503 Sum_probs=102.3
Q ss_pred CcceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCc-chhhHHHHHHhccCCCcEEEE
Q 008540 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL 346 (562)
Q Consensus 269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~-~v~~gle~~l~~M~~GE~~~v 346 (562)
+.++.++++++|.|. .|..|+.|+|||.+++. +|++|+++.. ++.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus 48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v 124 (180)
T 2f4e_A 48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV 124 (180)
T ss_dssp ETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEE
T ss_pred CCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEE
Confidence 457999999999995 89999999999999998 5999998753 568999999999 999999999999999999999
Q ss_pred EEcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccc---cccCChHHHHHHH
Q 008540 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAA 399 (562)
Q Consensus 347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~---~~~~~~~e~~~~a 399 (562)
.|+++++||..+... .+.||+++++.|+|+|+++....+ .|+|+.+||+..|
T Consensus 125 ~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A 179 (180)
T 2f4e_A 125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA 179 (180)
T ss_dssp EECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred EECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence 999999999887531 246999999999999999998777 8999999998876
No 39
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A
Probab=99.81 E-value=2.4e-19 Score=154.13 Aligned_cols=110 Identities=39% Similarity=0.613 Sum_probs=101.9
Q ss_pred CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (562)
Q Consensus 268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~ 347 (562)
.|++++++++++|+|...|..++.|+|||.+++.||++|+++. .++.|++|.+|.+.+++||+.+|..|++||++.|.
T Consensus 17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ 94 (128)
T 3o5q_A 17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL 94 (128)
T ss_dssp CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHH--HHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecC--CCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence 6889999999999997789999999999999999999999864 24689999999999999999999999999999999
Q ss_pred EcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (562)
Q Consensus 348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~ 382 (562)
|++.++||+.+.. ..||++++|.|+|+|+++.
T Consensus 95 ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~ 126 (128)
T 3o5q_A 95 CKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126 (128)
T ss_dssp ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred EChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence 9999999998765 4799999999999999886
No 40
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*
Probab=99.81 E-value=4.1e-19 Score=150.97 Aligned_cols=111 Identities=41% Similarity=0.624 Sum_probs=99.5
Q ss_pred CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCC-----CCcccEEEEcCCcchhhHHHHHHhccCCCcE
Q 008540 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343 (562)
Q Consensus 269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~-----~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~ 343 (562)
+.++.++|+++|+|...|..|+.|+|||.+++.||++|+++... ....|++|.+|.+.+++||+.+|..|++||+
T Consensus 3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 82 (119)
T 3kz7_A 3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK 82 (119)
T ss_dssp SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence 45799999999999778999999999999999999999987531 1248999999999999999999999999999
Q ss_pred EEEEEcCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (562)
Q Consensus 344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (562)
+.|.|+++++||+.+... ..||++++|+|+|+|+++
T Consensus 83 ~~v~ip~~~aYG~~g~~~--~~Ip~~~~l~f~veL~~i 118 (119)
T 3kz7_A 83 ARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDI 118 (119)
T ss_dssp EEEEECGGGTTCTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred EEEEECcHHhcCCCCCCC--CccCcCCeEEEEEEEEEe
Confidence 999999999999987643 369999999999999876
No 41
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=2.4e-19 Score=154.38 Aligned_cols=114 Identities=31% Similarity=0.489 Sum_probs=107.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+..++++|+.+|++|+|++|+..|++|+++.|.+.. +|+|+|.||.++|+|++|+.+|+++++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------------LYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999886543 489999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
++|+++.+|+++|.+|..+|++++|+.+|++|++++|+|.+++..|+.|
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888876
No 42
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=163.21 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCcceEEEEEecCCCCCC-CCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEE
Q 008540 268 DDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344 (562)
Q Consensus 268 ~d~~v~k~il~~G~g~~~-p~~~~~v~v~~~~~~~~--g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~ 344 (562)
.+.++.|+|+++|.|... +..|++|+|||.+++.| |++||+++. ++.|++|.||.+.+|+||+.+|.+|++||++
T Consensus 8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~ 85 (165)
T 2lkn_A 8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEIA 85 (165)
T ss_dssp HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence 367799999999999532 35799999999999954 999999864 7899999999999999999999999999999
Q ss_pred EEEEcCCCccC
Q 008540 345 LLTIAPEYAFG 355 (562)
Q Consensus 345 ~v~i~~~~~yg 355 (562)
.|+|||+++||
T Consensus 86 ~~~ipp~laYG 96 (165)
T 2lkn_A 86 QFLCDIKHVVL 96 (165)
T ss_dssp EEECCHHHHSS
T ss_pred EEEECHHHhcC
Confidence 99999999999
No 43
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.79 E-value=3.7e-19 Score=156.88 Aligned_cols=138 Identities=16% Similarity=0.141 Sum_probs=120.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
....+..+++.|+.+|+.|+|++|+..|++||++.|..+... ..........+|+|+|.|+.++|+|++|+.+|+++
T Consensus 7 ~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 7 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 356788999999999999999999999999999999854321 00112233458999999999999999999999999
Q ss_pred Hhc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 475 LDL-------DSRNVKAL----YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 475 l~~-------~p~~~ka~----~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
|++ +|++.++| |++|.+|..+|++++|+.+|++|++++|++..+...+..+++.+.+..++
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999 99999999999999999999999999999999999999988887776544
No 44
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=155.95 Aligned_cols=110 Identities=27% Similarity=0.409 Sum_probs=99.8
Q ss_pred cccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecC
Q 008540 149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227 (562)
Q Consensus 149 ~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~ 227 (562)
+..++.+.++++++|+|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|++++|.|||
T Consensus 39 ~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~ 118 (157)
T 2jwx_A 39 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS 118 (157)
T ss_dssp SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECG
T ss_pred ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECc
Confidence 445566689999999983 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCC-CCCCCCCCCCCCCCeEEEEEEeeccccc
Q 008540 228 QYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV 263 (562)
Q Consensus 228 ~~~~g~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 263 (562)
+++||+.+ .+ +.||||++|+|+|+|+++...
T Consensus 119 ~~aYG~~g~~~-----~~IPp~stLiF~VeL~~i~~~ 150 (157)
T 2jwx_A 119 KYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDL 150 (157)
T ss_dssp GGTTTTTCCSS-----SCCCTTCCEEEEEEEEEEEEC
T ss_pred hhcCCcccccC-----CCcCCCCeEEEEEEEEEEEcc
Confidence 99999988 43 579999999999999998653
No 45
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...
Probab=99.79 E-value=9e-19 Score=145.91 Aligned_cols=102 Identities=26% Similarity=0.515 Sum_probs=94.1
Q ss_pred ceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCC
Q 008540 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229 (562)
Q Consensus 154 ~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~ 229 (562)
++.++++++|+|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.+.|||++
T Consensus 1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~ 80 (107)
T 2ppn_A 1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY 80 (107)
T ss_dssp CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence 356789999999656999999999999999999999987 6999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 230 GFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 230 ~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
+||+.+.+ +.|||+++|+|+|+|+++
T Consensus 81 ayG~~~~~-----~~Ip~~~~l~f~v~l~~v 106 (107)
T 2ppn_A 81 AYGATGHP-----GIIPPHATLVFDVELLKL 106 (107)
T ss_dssp TTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred ccCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence 99998875 569999999999999875
No 46
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A
Probab=99.78 E-value=1.2e-18 Score=147.68 Aligned_cols=109 Identities=28% Similarity=0.422 Sum_probs=99.7
Q ss_pred ccccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540 148 DICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (562)
Q Consensus 148 ~~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp 226 (562)
++..++.+.++++++|.|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|+++.+.||
T Consensus 8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip 87 (118)
T 2awg_A 8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 87 (118)
T ss_dssp ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEEC
Confidence 3456677899999999984 479999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 227 ~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
|++|||+.+.+ +.|||+++|+|+|+|+++.
T Consensus 88 ~~~ayG~~~~~-----~~Ip~~~~l~f~v~l~~v~ 117 (118)
T 2awg_A 88 SKYCYGPQGRS-----PYIPPHAALCLEVTLKTAV 117 (118)
T ss_dssp GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred hHHccCCCCCC-----CccCCCCeEEEEEEEEEec
Confidence 99999998875 5799999999999998863
No 47
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1
Probab=99.78 E-value=1.4e-18 Score=146.14 Aligned_cols=104 Identities=25% Similarity=0.450 Sum_probs=95.9
Q ss_pred CcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecC
Q 008540 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227 (562)
Q Consensus 152 d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~ 227 (562)
+.++.++++++|+|...+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|||
T Consensus 5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~ 84 (113)
T 1yat_A 5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG 84 (113)
T ss_dssp GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence 45788999999999555999999999999999999999987 58999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 228 ~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
+++||+.+.+ +.|||+++|+|+|+|+++
T Consensus 85 ~~ayG~~~~~-----~~Ip~~~~l~f~vel~~i 112 (113)
T 1yat_A 85 PYAYGPRGFP-----GLIPPNSTLVFDVELLKV 112 (113)
T ss_dssp GGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred HHCcCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence 9999998875 569999999999999875
No 48
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=152.55 Aligned_cols=115 Identities=29% Similarity=0.497 Sum_probs=97.5
Q ss_pred cceeecCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCC
Q 008540 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK 340 (562)
Q Consensus 262 ~~~~~~~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~ 340 (562)
.+.+++.++++.++++++|.|. .+..++.|+|||.+++. +|++|+++.. +..|++|.+|.+.+++||+.+|..|++
T Consensus 18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~ 94 (134)
T 3b7x_A 18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR 94 (134)
T ss_dssp TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence 3467888999999999999995 57789999999999998 6999998652 468999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeee
Q 008540 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382 (562)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~ 382 (562)
||++.|.||++++||+.+.. +.||+++++.|+|+|+++.
T Consensus 95 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~VeL~~i~ 133 (134)
T 3b7x_A 95 GELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIELLDFL 133 (134)
T ss_dssp TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEC
T ss_pred CCEEEEEECHHHCcCCCCCC---CCcCcCCeEEEEEEEEEEe
Confidence 99999999999999998764 3599999999999999875
No 49
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A
Probab=99.78 E-value=4.4e-18 Score=146.57 Aligned_cols=115 Identities=38% Similarity=0.633 Sum_probs=101.9
Q ss_pred eeecCCcceEEEEEecC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCC
Q 008540 264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK 340 (562)
Q Consensus 264 ~~~~~d~~v~k~il~~G-~g-~~~p~~~~~v~v~~~~~~-~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~ 340 (562)
.+.++++.++++++++| .| ...|..|+.|+|||.+++ .+|++|+++.. +..|++|.+|.+.+++||+.+|..|++
T Consensus 10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~ 87 (129)
T 2vn1_A 10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRK 87 (129)
T ss_dssp EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence 34567888999999988 55 368999999999999999 79999998752 468999999999999999999999999
Q ss_pred CcEEEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeee
Q 008540 341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383 (562)
Q Consensus 341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~ 383 (562)
||++.|.|+++++||+.+.. +.||+++++.|+|+|+++..
T Consensus 88 Ge~~~v~ip~~~aYG~~~~~---~~Ip~~~~l~f~vel~~v~~ 127 (129)
T 2vn1_A 88 NEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIELLSFRE 127 (129)
T ss_dssp TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred CCEEEEEEChHHcCCCCCCC---CCcCCCCeEEEEEEEEEEec
Confidence 99999999999999988754 36999999999999998874
No 50
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}
Probab=99.77 E-value=2.9e-18 Score=147.35 Aligned_cols=105 Identities=29% Similarity=0.479 Sum_probs=94.6
Q ss_pred cCcceeEe--eeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEE
Q 008540 151 KDGGIIKK--ILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224 (562)
Q Consensus 151 ~d~~~~k~--i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~ 224 (562)
.+.++.++ ++++|+|...+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.
T Consensus 20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ 99 (130)
T 2lgo_A 20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99 (130)
T ss_dssp SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence 34555555 9999999655999999999999999999999987 58999999999999999999999999999999
Q ss_pred ecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 225 vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
|||+++||+.+.+ +.|||+++|+|+|+|+++
T Consensus 100 ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i 130 (130)
T 2lgo_A 100 IPYQLAYGERGYP-----PVIPPKATLVFEVELLAV 130 (130)
T ss_dssp ECTTTSTTTTCCS-----TTSCSSCCEEEEEEEEEC
T ss_pred ECcHHHCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence 9999999998875 569999999999999864
No 51
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.77 E-value=3e-19 Score=158.75 Aligned_cols=132 Identities=22% Similarity=0.332 Sum_probs=100.3
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
.++.||.|+|||++++.||++||+|+..+.|+.|.+|.+++||||++||.||++|++++|.|||++|||+++
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~-------- 95 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS-------- 95 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence 588999999999999999999999987668999999999999999999999999999999999999999876
Q ss_pred CcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
..++..|..-.|.....+ ..|..+..-...|. +......++.|++++||+|++.++.+.-
T Consensus 96 ~~lv~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v 158 (169)
T 4dt4_A 96 PDLIQYFSRREFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI 158 (169)
T ss_dssp GGGEEEEEGGGGTTTCCC-CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred hHHEEEeCHHHCCCcCCC-CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEE
Confidence 566666665555421111 11221111111121 1222335589999999999999887753
No 52
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.6e-18 Score=152.57 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=100.8
Q ss_pred CCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP 129 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~-~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip 129 (562)
..++.||.|++||++++. ||++|++|+.. .|+.|.+|.++++|||++||.||++|++++|.|||++|||+++
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------ 77 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------ 77 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence 568899999999999998 99999999864 7999999999999999999999999999999999999999876
Q ss_pred CCCcEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 130 ~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
..+++.+....|. ... ...|..+......|. +......++.|+++|||+|++.++.+.-
T Consensus 78 --~~~v~~v~~~~f~-~~~-~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v 139 (151)
T 2kr7_A 78 --SSYLQEVPRDQFE-GIE-LEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRF 139 (151)
T ss_dssp --SCEEEEEEGGGGT-TSC-CCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEE
T ss_pred --cceEEEEcHHHcC-CCC-CccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEE
Confidence 5677777776661 111 112222221111121 1123335689999999999999987764
No 53
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=99.77 E-value=2.8e-18 Score=147.98 Aligned_cols=105 Identities=30% Similarity=0.509 Sum_probs=96.8
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
..+.++.++++++|.| ..+..||.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|
T Consensus 25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i 103 (133)
T 2y78_A 25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI 103 (133)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence 4567888999999998 68999999999999999999999986 689999999999999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
||+++||+.+.+ +.||||++|+|+|+|+++
T Consensus 104 p~~~aYG~~~~~-----~~Ipp~~~l~f~VeL~~I 133 (133)
T 2y78_A 104 PPQLGYGARGAG-----GVIPPNATLVFEVELLDV 133 (133)
T ss_dssp CGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred CcHHhCCCCCCC-----CCCCCCCeEEEEEEEEEC
Confidence 999999998875 579999999999999863
No 54
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.76 E-value=7.3e-18 Score=172.84 Aligned_cols=155 Identities=35% Similarity=0.599 Sum_probs=136.0
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHH
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK 469 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~ 469 (562)
+.++..+.+..++.+|+.++++|+|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 5788899999999999999999999999999999999876532 111233334566678889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|+++|+++|++.++|+++|.+|..++++++|+.+|++|++++|++..++..+..+...+++.+++++.+|++||+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 55
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=99.76 E-value=2.8e-18 Score=158.96 Aligned_cols=104 Identities=23% Similarity=0.378 Sum_probs=96.6
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc-cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCC
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~ 228 (562)
+.+.++.++++++|+| ..|..||.|+|||++++.+|++|+++ .|+.|.+| ++++||+++|.+|++|++++|+|||+
T Consensus 114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~ 190 (219)
T 3oe2_A 114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSD 190 (219)
T ss_dssp ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECch
Confidence 4578899999999999 68999999999999999999999987 88899987 89999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 229 YGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 229 ~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
+|||+.|.+ +.||||++|+|+|+|+++.
T Consensus 191 lAYG~~g~~-----~~IPpnstLvFeVeLl~Ik 218 (219)
T 3oe2_A 191 QAYGAEGAG-----DLIDPFTPLVFEIELIAVS 218 (219)
T ss_dssp GTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred hcCCCCCCC-----CCCCCCCeEEEEEEEEEEe
Confidence 999999885 5699999999999999874
No 56
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=145.62 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=101.2
Q ss_pred ecCCcceEEEEEecCCC-CCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcE
Q 008540 266 ITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343 (562)
Q Consensus 266 ~~~d~~v~k~il~~G~g-~~~p~~~~~v~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~ 343 (562)
...+.++.++++++|.+ ...|..|+.|+|||.+++. ||++|+++.......|++|.+|.+.+++||+.+|..|++||+
T Consensus 8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~ 87 (125)
T 4dip_A 8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK 87 (125)
T ss_dssp GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence 34577899999999982 3789999999999999998 999999875212368999999999999999999999999999
Q ss_pred EEEEEcCCCccCCccccccccCCCCCccEEEEEEEeeeeec
Q 008540 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384 (562)
Q Consensus 344 ~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~ 384 (562)
+.|.|++.++||+.+.. .||++++++|+|+|+++.+.
T Consensus 88 ~~~~ip~~~aYG~~g~~----~Ip~~~~l~f~vel~~i~~~ 124 (125)
T 4dip_A 88 RKLIIPPALGYGKEGKG----KIPPESTLIFNIDLLEIRNG 124 (125)
T ss_dssp EEEEECGGGTTTTTCBT----TBCTTCCEEEEEEEEEEECC
T ss_pred EEEEEChHHhcCCCCCC----CCCCCCeEEEEEEEEEEEcC
Confidence 99999999999998743 69999999999999998753
No 57
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.76 E-value=3.8e-19 Score=165.86 Aligned_cols=169 Identities=23% Similarity=0.288 Sum_probs=115.3
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCcc
Q 008540 53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY 119 (562)
Q Consensus 53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~-------------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~y 119 (562)
++.||.|+|||++++ ||++||+|+.. +.|+.|.+|.++++|||++||.||++|++++|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 678999999999999 99999999752 3799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecccceEEEe
Q 008540 120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV 199 (562)
Q Consensus 120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~ 199 (562)
|+++ ..++..+..-.|.........|..+. . ....|......++.|++++||+|+|.++.+.-+-....-
T Consensus 81 Ge~~--------~~lv~~vp~~~f~~~~~~~~vG~~~~-~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~e 150 (231)
T 3prb_A 81 GKRD--------PSKIKLIPLSEFTKRGIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD 150 (231)
T ss_dssp CCCC--------GGGEEEEETHHHHTTTCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECC
T ss_pred CCCC--------hHHEEecCHHHCCcccCCCCCCcEEE-e-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEec
Confidence 9887 45555555444432100011122111 0 001133334456899999999999999987653333322
Q ss_pred cCCCCcchHHHHHhh----cc---CCcEEEEEecCCCccC
Q 008540 200 KDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGFG 232 (562)
Q Consensus 200 g~~~~~~gl~~~l~~----m~---~Ge~~~v~vp~~~~~g 232 (562)
...+-+.++-.-..+ |+ .++++.|.+|+...|-
T Consensus 151 at~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~~ 190 (231)
T 3prb_A 151 DKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFI 190 (231)
T ss_dssp SHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGGS
T ss_pred CCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhhh
Confidence 222222232222221 22 4678888889887653
No 58
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.76 E-value=4e-19 Score=156.49 Aligned_cols=128 Identities=27% Similarity=0.390 Sum_probs=97.5
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCcc
Q 008540 53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY 119 (562)
Q Consensus 53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~-------------~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~y 119 (562)
++.||.|+|||++++ ||++||+|+.. +.|+.|.+|.+++||||++||.||++|++++|+|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 678999999999999 99999999752 3799999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcEEEEEEEeEeeeccccc-cCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 120 GESGSPPTIPPNATLQFDVELLSWTSVKDIC-KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 120 g~~~~~~~ip~~~~l~~~vel~~~~~~~~~~-~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
|+++ ..++..+....+... ++. ..|..+. . ....+......++.|++++||+|++.++.++-
T Consensus 81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~~-~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v 143 (157)
T 3pr9_A 81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTIT-I-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRI 143 (157)
T ss_dssp CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEEE-E-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEEE-e-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEE
Confidence 9877 456666655444321 111 1122211 1 11123334445689999999999999987764
No 59
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=149.13 Aligned_cols=110 Identities=28% Similarity=0.418 Sum_probs=100.7
Q ss_pred ccccCcceeEeeeecCccc-cCCCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEec
Q 008540 148 DICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK 226 (562)
Q Consensus 148 ~~~~d~~~~k~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp 226 (562)
++..++.+.++++++|.|. ..+..||.|++||++++.+|++|++++|+.|.+|.+++++||+++|.+|++|+++.|.||
T Consensus 12 ~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip 91 (135)
T 2d9f_A 12 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 91 (135)
T ss_dssp ESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEEC
T ss_pred EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEEC
Confidence 3456677899999999983 489999999999999999999999989999999999999999999999999999999999
Q ss_pred CCCccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccc
Q 008540 227 PQYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKT 262 (562)
Q Consensus 227 ~~~~~g~~~-~~~~~~~~~ip~~~~l~~~v~l~~~~~ 262 (562)
|+++||+.+ .+ +.|||+++|+|+|+|+++..
T Consensus 92 ~~~aYG~~~~~~-----~~Ip~~~~l~f~vel~~v~~ 123 (135)
T 2d9f_A 92 SKYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVD 123 (135)
T ss_dssp HHHHTCTTCCSS-----SCCCTTCCEEEEEEEEEEES
T ss_pred hhHccCcCCcCC-----CccCCCCeEEEEEEEEEeec
Confidence 999999887 43 57999999999999999865
No 60
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=99.75 E-value=1.2e-17 Score=149.19 Aligned_cols=122 Identities=25% Similarity=0.406 Sum_probs=104.5
Q ss_pred CCcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEE
Q 008540 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347 (562)
Q Consensus 268 ~d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~ 347 (562)
-+.++.++++++|+|...|..|+.|+|||.+++.||++|+++.. ++.|++|.+| .+|+||+.+|.+|++||++.|.
T Consensus 35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~~~ 110 (167)
T 1jvw_A 35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRPN--EVIKGWTEALQLMREGDRWRLF 110 (167)
T ss_dssp CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEeC--chhHHHHHHHcCCCCCCEEEEE
Confidence 35679999999999964599999999999999999999998642 4589999994 7999999999999999999999
Q ss_pred EcCCCccCCccccccccCCCCCccEEEEEEEeeeeeccccccCChHHHHHH
Q 008540 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEA 398 (562)
Q Consensus 348 i~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~~~~~~~~~~~~~e~~~~ 398 (562)
||+.++||..+.. +.||++++++|+|+|+++.+. .+.++.++..+.
T Consensus 111 Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~~ 156 (167)
T 1jvw_A 111 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDEI 156 (167)
T ss_dssp ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHHH
T ss_pred ECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHHH
Confidence 9999999998754 469999999999999999853 455666665443
No 61
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.74 E-value=1.7e-17 Score=154.27 Aligned_cols=107 Identities=30% Similarity=0.503 Sum_probs=98.8
Q ss_pred ccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEE
Q 008540 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLL 223 (562)
Q Consensus 148 ~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v 223 (562)
..+.+.++.++++++|+| ..+..||.|+++|++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++|+++.|
T Consensus 99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v 177 (209)
T 3uf8_A 99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL 177 (209)
T ss_dssp CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence 455778899999999999 55999999999999999999999987 6899999999999999999999999999999
Q ss_pred EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 224 ~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
.|||++|||+.|.+ +.||||++|+|+|+|+++
T Consensus 178 ~Ipp~~aYG~~g~~-----~~IP~~s~LvF~VeL~~I 209 (209)
T 3uf8_A 178 TIPPQLGYGARGAA-----GVIPPNATLVFEVELLDV 209 (209)
T ss_dssp EECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred EECcHHhCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence 99999999999875 569999999999999863
No 62
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.74 E-value=3.2e-19 Score=157.02 Aligned_cols=131 Identities=23% Similarity=0.384 Sum_probs=96.6
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCc
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~-------------~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~ 118 (562)
+++.||.|+|||++++.||++|++|+. ...|+.|.+|.++++|||++||.||++|++++|.|||++|
T Consensus 1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a 80 (151)
T 1ix5_A 1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA 80 (151)
T ss_dssp CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence 367899999999999889999999963 2369999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEeEeeeccccccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 119 yg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
||+++ ..+++.|.+..|.........+..+. . ..-.+......++.|+++|||++++.++.++-
T Consensus 81 YG~~~--------~~~v~~v~~~~f~~~~~~~~~G~~~~-~-~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v 144 (151)
T 1ix5_A 81 YGNRN--------EMLIQKIPRDAFKEADFEPEEGMVIL-A-EGIPATITEVTDNEVTLDFNHELAGKDLVFTI 144 (151)
T ss_dssp SCSCC--------STTBCCEETHHHHTSTTCCCTTEEEE-S-SSCEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred CCCCC--------ccEEEEEEHHHcCccCCcccccCEEE-E-CCeEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence 99876 45566666655542100011111110 0 00111122334589999999999999987753
No 63
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.74 E-value=4.9e-18 Score=154.92 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=98.9
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (562)
Q Consensus 53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~ 132 (562)
++.||.|+|+|++++.||++|++|+.. +|+.|.+|.+++||||++||.+|++|++++|+|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~--------~ 73 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E 73 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC--------T
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC--------h
Confidence 678999999999998899999999864 7999999999999999999999999999999999999999876 4
Q ss_pred cEEEEEEEeEeeeccccccCcceeEeeeecC--ccccCCCCCCeEEEEEEEEeCCCeEeecc
Q 008540 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKA 192 (562)
Q Consensus 133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~ 192 (562)
.+++.|....|.....+ ..+..+......| .+..+...++.|+++|||+|++.++.|+-
T Consensus 74 ~lV~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v 134 (196)
T 2kfw_A 74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNV 134 (196)
T ss_dssp TTCEEECGGGCCCSSCC-CTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEE
T ss_pred hhEEEEEHHHCCCccCc-ccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence 45566655555321111 1222222111111 12244456789999999999999887763
No 64
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A
Probab=99.73 E-value=1e-17 Score=144.12 Aligned_cols=110 Identities=19% Similarity=0.342 Sum_probs=96.8
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhh------ccCCc
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE 219 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge 219 (562)
..+.++.+++++.|.| ..+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+ |++|+
T Consensus 9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge 87 (129)
T 1u79_A 9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG 87 (129)
T ss_dssp ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence 3456788999999998 67899999999999999999999986 6899999999999999999998 99999
Q ss_pred EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008540 220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260 (562)
Q Consensus 220 ~~~v~vp~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 260 (562)
+++|.|||+++||+.+.+.......||||++|+|+|+|+++
T Consensus 88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i 128 (129)
T 1u79_A 88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128 (129)
T ss_dssp EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence 99999999999998875211112469999999999999875
No 65
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.72 E-value=1.8e-17 Score=148.36 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (562)
Q Consensus 53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~ 132 (562)
++.||.|+|+|++++.||++|++|+.. .|+.|.+|.++++|||++||.||++|++++|.|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~--------~ 73 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E 73 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC--------T
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC--------h
Confidence 678999999999998899999999864 7999999999999999999999999999999999999999876 4
Q ss_pred cEEEEEEEeEeeeccccccCcceeEeeeecCc--cccCCCCCCeEEEEEEEEeCCCeEeeccc
Q 008540 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE--KWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (562)
Q Consensus 133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~--g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (562)
.+++.|....|.....+ ..+..+......|. +......++.|+++||++|++.++.|+-+
T Consensus 74 ~~v~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~ve 135 (171)
T 2k8i_A 74 NLVQRVPKDVFMGVDEL-QVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVE 135 (171)
T ss_dssp TSEEEEEGGGGTTSSCC-CTTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEE
T ss_pred hhEEEeeHHHCCcccCc-cCCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEE
Confidence 55666655554321111 11111111111110 11222345899999999999999988653
No 66
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=99.71 E-value=4.7e-17 Score=150.98 Aligned_cols=104 Identities=28% Similarity=0.464 Sum_probs=95.3
Q ss_pred ccCcceeEeeeecCccccCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEe
Q 008540 150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV 225 (562)
Q Consensus 150 ~~d~~~~k~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~v 225 (562)
+.+.++.+++++.|+| ..|..||.|+|||.+++.+|++|+++ .|+.|.+ +++++||+++|.+|++|+++.|+|
T Consensus 103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I 179 (213)
T 1fd9_A 103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV 179 (213)
T ss_dssp ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence 4567889999999999 78999999999999999999999987 6888988 589999999999999999999999
Q ss_pred cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 226 p~~~~~g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
||+++||+.|.+ +.|||+++|+|+|+|+++.
T Consensus 180 P~~laYG~~g~~-----~~Ipp~stLiF~VeLl~v~ 210 (213)
T 1fd9_A 180 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 210 (213)
T ss_dssp CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEE
T ss_pred CchhccCccCCC-----CCCCCCCeEEEEEEEEEEE
Confidence 999999998864 5799999999999999875
No 67
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=133.87 Aligned_cols=91 Identities=25% Similarity=0.445 Sum_probs=84.6
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008540 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE 242 (562)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~ 242 (562)
..+..||.|++||++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+.+.+
T Consensus 4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~----- 78 (102)
T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP----- 78 (102)
T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence 46889999999999999999999986 689999999999999999999999999999999999999988774
Q ss_pred CCCCCCCeEEEEEEeecccc
Q 008540 243 GAVPPNATLQIALELVSWKT 262 (562)
Q Consensus 243 ~~ip~~~~l~~~v~l~~~~~ 262 (562)
+.|||+++|+|+|+|+++..
T Consensus 79 ~~Ip~~~~l~f~v~l~~v~~ 98 (102)
T 2pbc_A 79 PKIPGGATLVFEVELLKIER 98 (102)
T ss_dssp TTBCTTCCEEEEEEEEEEGG
T ss_pred CCcCcCCeEEEEEEEEEecc
Confidence 57999999999999999865
No 68
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=1.5e-16 Score=136.92 Aligned_cols=115 Identities=24% Similarity=0.355 Sum_probs=101.2
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
..+.|..+++.|+.+|++|+|++|+..|++|+++.|.+. .+|+|+|.||+++|+|++|+.+|+++
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------------~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------------TFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 356788899999999999999999999999999988654 34899999999999999999999999
Q ss_pred HhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 475 LDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 475 l~~~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
|+++|++ .++|+++|.+|..++++++|+++|++++.++|+ +++...+..+
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 9998876 468999999999999999999999999999885 4555555443
No 69
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.7e-16 Score=134.63 Aligned_cols=117 Identities=24% Similarity=0.310 Sum_probs=108.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+..+|+.+++.|+|++|+..|++++++.|.+. .+++++|.|+.++++|++|+.+|++++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999988654 34899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------p~~~~~~~~l~~l~~~~ 529 (562)
+|++..+++++|.+|..+|++++|+.+|+++++++ |++..+...+..+..++
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 99999999988876543
No 70
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.67 E-value=6.3e-17 Score=142.94 Aligned_cols=126 Identities=20% Similarity=0.263 Sum_probs=96.5
Q ss_pred CCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCCC
Q 008540 53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA 132 (562)
Q Consensus 53 ~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~~ 132 (562)
++.||.|+|||+++ .||++|++++ +.|.+|.++++|||++||.||++|++++|.|||++|||+++ .
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~ 68 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P 68 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence 67899999999999 8999999996 89999999999999999999999999999999999999876 5
Q ss_pred cEEEEEEEeEeeeccccccCcceeEeeeecCc---cccCCCCCCeEEEEEEEEeCCCeEeeccc
Q 008540 133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD 193 (562)
Q Consensus 133 ~l~~~vel~~~~~~~~~~~d~~~~k~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~ 193 (562)
.+++.|.+..|.....+ ..|..+......|. +...-..++.|++++||++++.++.++-+
T Consensus 69 ~lv~~v~~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~ve 131 (158)
T 3cgm_A 69 EGVQVVPLSAFPEDAEV-VPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVE 131 (158)
T ss_dssp GGEEEEEGGGSCTTSCC-CTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred ceEEEEEHHHCCCCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEE
Confidence 77888877766431111 11221111111121 12233355899999999999999887653
No 71
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A
Probab=99.66 E-value=9.9e-16 Score=143.05 Aligned_cols=104 Identities=32% Similarity=0.546 Sum_probs=94.3
Q ss_pred CcceEEEEEecCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCCcchhhHHHHHHhccCCCcEEEEEE
Q 008540 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI 348 (562)
Q Consensus 269 d~~v~k~il~~G~g~~~p~~~~~v~v~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~v~~gle~~l~~M~~GE~~~v~i 348 (562)
+.++..+++++|.| ..|..|+.|+|||.+++.||++|+++.. ++.|++|.+| .+|+||+.+|..|++||++.|.|
T Consensus 120 ~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~--~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~I 194 (224)
T 1q6h_A 120 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYT--RGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI 194 (224)
T ss_dssp TTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGG--GTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred CCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccc--cCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEEE
Confidence 56789999999999 5899999999999999999999998753 5689999994 79999999999999999999999
Q ss_pred cCCCccCCccccccccCCCCCccEEEEEEEeee
Q 008540 349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381 (562)
Q Consensus 349 ~~~~~yg~~~~~~~~~~ip~~~~l~f~ieL~~~ 381 (562)
|++++||..+.. .||++++++|+|+|+++
T Consensus 195 P~~laYG~~g~~----~IPp~stLiF~VeL~~i 223 (224)
T 1q6h_A 195 PPELAYGKAGVP----GIPPNSTLVFDVELLDV 223 (224)
T ss_dssp CGGGTTTTTCBT----TBCTTCCEEEEEEEEEE
T ss_pred CchhhcCcCCCC----CCCCCCEEEEEEEEEEe
Confidence 999999988753 39999999999999876
No 72
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.66 E-value=1.5e-16 Score=132.75 Aligned_cols=85 Identities=22% Similarity=0.438 Sum_probs=76.0
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~ 130 (562)
..++.||.|+|+|++++ ||++|+++. +.|+.|.+|.+++||||+++|.||++|++++|.||+...||..+. +
T Consensus 28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~-----~ 99 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----Q 99 (113)
T ss_dssp -CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----G
T ss_pred CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC-----C
Confidence 57899999999999998 999999996 489999999999999999999999999999999974444998763 5
Q ss_pred CCcEEEEEEEeEe
Q 008540 131 NATLQFDVELLSW 143 (562)
Q Consensus 131 ~~~l~~~vel~~~ 143 (562)
+++++|+|+|+++
T Consensus 100 g~~l~F~V~l~~V 112 (113)
T 1hxv_A 100 SKPVTFEVVLKAI 112 (113)
T ss_dssp SCCCEEEEEECCB
T ss_pred CCEEEEEEEEEEE
Confidence 7999999999876
No 73
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=3e-15 Score=134.52 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=107.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|+.+++.|+|++|+..|++++++.|.+. .+++++|.||+++++|++|+.+|+++++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 73 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELATV 73 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999988643 3489999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--VKLEYKTLKEKMKEY 532 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~--~~~~l~~l~~~~~~~ 532 (562)
++|++..+|+++|.+|..+|++++|+.+|+++++++|++.. +...+..++.++.+.
T Consensus 74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977 555555555555443
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=4.9e-15 Score=131.42 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=98.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+..+...|..+++.|+|++|+..|++++.+.|.+... |+++|.|+.++|+|++|+..|+++++
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~---------------~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------IMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 456778999999999999999999999999998876544 89999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
++|+++.+|+++|.||..+|++++|+..|++|++++|+++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999875
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=1.2e-14 Score=127.29 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=109.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..+++.|+|++|+..|++++...|.+.. +++++|.|+.++|+|++|+..|++++.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------------YFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34567788999999999999999999999999886543 388999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
++|+++.+++++|.+|..+|++++|+..|+++++++|+++........+...+....+
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~ 138 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988777766666666555443
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.58 E-value=9.5e-15 Score=129.21 Aligned_cols=119 Identities=16% Similarity=0.202 Sum_probs=105.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..+++.|+|++|+..|++++...|.+... ++++|.|+.++|+|++|+..|++++.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------------~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF---------------FLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 346678889999999999999999999999998865433 88999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.......++...+.
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998766555554444443
No 77
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=1.1e-14 Score=128.95 Aligned_cols=115 Identities=13% Similarity=0.035 Sum_probs=100.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+....+...|+.|++.|+|++|+..|++|+++.|.+.. +|+++|.||.++|++++|+.+++++++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------------AHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 44566778999999999999999999999999887543 388999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~-~~~al~l~p~~~~~~~~l~~l~ 526 (562)
++|+++.+++++|.+|..++++++|... +++|++++|+|+.+......+.
T Consensus 94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 9999999999999999999999876655 6899999999998877766554
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=1.5e-14 Score=125.20 Aligned_cols=120 Identities=29% Similarity=0.391 Sum_probs=109.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+|+.|+..|.+++.+.|.+. .+++++|.|+.++++|++|+.+++++++++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999987643 348999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~~~~~~~~ 533 (562)
|+++.+++++|.+|..+|++++|+..|+++++++|+ +..+...+..+..+.....
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 7788888888876665544
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.55 E-value=6.7e-15 Score=130.49 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=107.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHH
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka 484 (562)
.|..+..+|++++|+..|.+++...|..... ++++|.+|+++|+|++|+.+++++++++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5778888999999999999999888765554 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
|+++|.+|..+|++++|+..|+++++++|++..+...++.+.....+..++.+.++++..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887777665444433444443
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.52 E-value=1.7e-13 Score=128.36 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=108.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
+..+..+|..++..|+|++|+..|++++...|.+...... ...........+++++|.+|.++|+|++|+..|++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998864322000 000001112233445999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+.-...
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988764443
No 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.51 E-value=4e-13 Score=119.73 Aligned_cols=123 Identities=24% Similarity=0.395 Sum_probs=111.2
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHH
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~ 471 (562)
.....+.+..+...|..++..|+|+.|+..|.+++...+.+. .+++++|.++..+++|++|+..+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 356778899999999999999999999999999999877542 34889999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 472 ~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+....
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 128 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 128 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887777664333
No 82
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.50 E-value=1.7e-13 Score=114.21 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=105.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|+.|+..|++++...|.+. .+++++|.++.++++|++|+..++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 466788999999999999999999999999877543 34889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998888887764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.6e-13 Score=151.93 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=79.1
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhcHHHH
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAAC 457 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~ 457 (562)
+.+..+.+.|+.+.++|+|++|+..|++|+++.|..... .++-... +..-...+|+|+|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456777888888888888888888888888877654321 0000000 000112345555556
Q ss_pred HhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+.++|++++|+.+|+++++++|++..+|+++|.+|..+|++++|++.|++|++++|++..+...++.+...+.+..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 6566666666666666666556555566666666666666666666666666666665555555555555544433
No 84
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=99.49 E-value=5.2e-14 Score=125.02 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=74.4
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc----cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~ 243 (562)
.+..|+.|+++|++++.+|++|+++ +|+.|.+|.+++++||+++|.+|++|+++.|.|||++|||+.
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~--------- 94 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP--------- 94 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC---------
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence 5778999999999999999999987 799999999999999999999999999999999999999954
Q ss_pred CCCCCCeEEEEEEeecccc
Q 008540 244 AVPPNATLQIALELVSWKT 262 (562)
Q Consensus 244 ~ip~~~~l~~~v~l~~~~~ 262 (562)
+..+++.+....|..
T Consensus 95 ----~~~lv~~vp~~~f~~ 109 (169)
T 4dt4_A 95 ----SPDLIQYFSRREFMD 109 (169)
T ss_dssp ----CGGGEEEEEGGGGTT
T ss_pred ----ChHHEEEeCHHHCCC
Confidence 455788888888853
No 85
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.47 E-value=6.1e-13 Score=112.92 Aligned_cols=123 Identities=30% Similarity=0.326 Sum_probs=110.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
+.....+..+...|..++..|+|+.|+..|++++...+... .++.++|.++..++++++|+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~ 70 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------------VYFCNRAAAYSKLGNYAGAVQDCE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhhchHHHHHHHH
Confidence 34456778899999999999999999999999999876532 348899999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 473 ~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988888887765543
No 86
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=99.46 E-value=2.3e-13 Score=119.59 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred cCCCCCCeEEEEEEEEeC-CCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008540 167 ENPKDLDEVLVNYEARLE-DGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE 242 (562)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~ 242 (562)
..+..||.|++||++++. +|++|+++ .|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.
T Consensus 5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~-------- 76 (151)
T 2kr7_A 5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVY-------- 76 (151)
T ss_dssp CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSS--------
T ss_pred cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCC--------
Confidence 456789999999999998 99999987 699999999999999999999999999999999999999954
Q ss_pred CCCCCCCeEEEEEEeeccccceeecCCcceEEEEEecCC---CCCCCCCCCEEEEEEEEEecCCcE
Q 008540 243 GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD---GFERPNEGAVVKVKLIGKLQDGTV 305 (562)
Q Consensus 243 ~~ip~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~---g~~~p~~~~~v~v~~~~~~~~g~~ 305 (562)
+..+++.+....|.. . ....|..+..--..|. +...-..++.|+|+|++.|++-++
T Consensus 77 -----~~~~v~~v~~~~f~~-~-~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L 135 (151)
T 2kr7_A 77 -----ESSYLQEVPRDQFEG-I-ELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTL 135 (151)
T ss_dssp -----CSCEEEEEEGGGGTT-S-CCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCE
T ss_pred -----CcceEEEEcHHHcCC-C-CCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEE
Confidence 345888898888821 1 1222333322111121 111223456677777766654443
No 87
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.46 E-value=6.7e-13 Score=113.28 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..++..|+|++|+..|++++...|.+.. ...+++++|.|+.++|+|++|+..+++++..+|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999998876542 223488999999999999999999999999999
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 480 ~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
++ ..+++++|.+|..+|++++|+..|+++++.+|++..+......+..
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 99 8999999999999999999999999999999999877766665543
No 88
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.9e-13 Score=117.33 Aligned_cols=116 Identities=33% Similarity=0.559 Sum_probs=105.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+|..|+..|+++++..+.. .....+++++|.+|.++++|++|+..|++++.++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 5678899999999999999999999999876642 1235568999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
|++..+++++|.+|..+|++++|+..|+++++++|++..++..+..+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888877664
No 89
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=1.5e-13 Score=116.93 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+..+|..+++.|++++|+..|++++...|.+.. +++++|.++..+|++++|+..++++++++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4678899999999999999999999999887543 3889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
+..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999998743
No 90
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=3.5e-13 Score=115.18 Aligned_cols=116 Identities=30% Similarity=0.386 Sum_probs=105.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|+.|+..|++++...+.+. .+++++|.++..++++++|+..++++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------------KLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 366788999999999999999999999998876532 34889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
+|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888888776543
No 91
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=99.45 E-value=2.3e-13 Score=113.32 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=72.6
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008540 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG 243 (562)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp-~~~~~g~~~~~~~~~~~ 243 (562)
..+..||.|+++|++++ +|++|+++ +|+.|.+|.++++|||+++|.+|++|+++.|.|| |+. ||..+.
T Consensus 28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~------- 98 (113)
T 1hxv_A 28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL------- 98 (113)
T ss_dssp -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------
T ss_pred CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------
Confidence 36788999999999999 99999987 7999999999999999999999999999999996 553 886543
Q ss_pred CCCCCCeEEEEEEeecc
Q 008540 244 AVPPNATLQIALELVSW 260 (562)
Q Consensus 244 ~ip~~~~l~~~v~l~~~ 260 (562)
++++|+|+|+|+++
T Consensus 99 ---~g~~l~F~V~l~~V 112 (113)
T 1hxv_A 99 ---QSKPVTFEVVLKAI 112 (113)
T ss_dssp ---GSCCCEEEEEECCB
T ss_pred ---CCCEEEEEEEEEEE
Confidence 56899999999875
No 92
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.44 E-value=7.1e-13 Score=112.63 Aligned_cols=119 Identities=27% Similarity=0.338 Sum_probs=106.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|+.|+..|.+++...+... .+++++|.++..+++|++|+.++++++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 467788999999999999999999999999876532 34889999999999999999999999999
Q ss_pred CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 478 DSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 478 ~p~~-------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
.|.+ ..+++++|.+|..+|++++|+..|+++++++| +..+...+..+...+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 9887 99999999999999999999999999999999 678888888877666543
No 93
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=99.44 E-value=1e-13 Score=121.94 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~ 231 (562)
...||.|++||++++ +|++|+++ +|+.|.+|.+++++||++||.+|++|++++|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 467899999999999 99999986 489999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 232 GEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
|+.+. .+++.+....|.
T Consensus 81 G~~~~-------------~~V~~v~~~~f~ 97 (157)
T 3pr9_A 81 GKRDP-------------SKIKLIPLSEFT 97 (157)
T ss_dssp CCCCG-------------GGEEEEEHHHHH
T ss_pred CCCCh-------------HhEEEcCHHHCC
Confidence 96544 467777777764
No 94
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=1.1e-12 Score=124.17 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
..+...|..++..|+|++|+..|++++++.+ .+. .+++++|.|+.++++|++|+.+++++++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 5688999999999999999999999999986 322 237789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|++..+++++|.+|..+|++++|+..|+++++++|++.. +...++.+....++.+++. ..|.+...
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~-~~~~~al~ 145 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE-ENYKHATD 145 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHTT
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999984 4566666655555554433 35555443
No 95
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.43 E-value=4.1e-13 Score=126.66 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=76.7
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----------cCHHHHHHH
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAEKL 470 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~~~ 470 (562)
+...|..+++.|++++|+..|++++.+.|.+. .+++++|.++.++ |++++|+..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRYL---------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 34444444444444444444444444444322 2366677777777 777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 471 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
++++++++|++..+++.+|.+|..+|++++|+..|++|++++ ++..+...++.+.....+..+.. ..|++..
T Consensus 107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 178 (217)
T 2pl2_A 107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL-AQYAKAL 178 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 777777777777777777777777777777777777777777 66666666666666666555443 3444443
No 96
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=99.43 E-value=2.3e-13 Score=124.04 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=89.3
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
+..+|.|+++|++++.+|++|+++ +|+.|.+|.++++|||+++|.+|++|++++|.|||+.|||+.+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~---------- 72 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD---------- 72 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC----------
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC----------
Confidence 567899999999999999999987 6999999999999999999999999999999999999999643
Q ss_pred CCCCeEEEEEEeeccccceeecCCcceEEEEEecCC--CCCCCCCCCEEEEEEEEEecCCcE
Q 008540 246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD--GFERPNEGAVVKVKLIGKLQDGTV 305 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~~~~~~~d~~v~k~il~~G~--g~~~p~~~~~v~v~~~~~~~~g~~ 305 (562)
..+++.|.+..|..... ...+..+...-..|. +...-..+++|+|+|+..|++.++
T Consensus 73 ---~~lV~~vp~~~f~~~~~-~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L 130 (196)
T 2kfw_A 73 ---ENLVQRVPKDVFMGVDE-LQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNL 130 (196)
T ss_dssp ---TTTCEEECGGGCCCSSC-CCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCC
T ss_pred ---hhhEEEEEHHHCCCccC-cccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeE
Confidence 34677777777743111 222333321111110 112334466777777777755444
No 97
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=5.9e-13 Score=147.39 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
..+|+|+|.+|.++|++++|+.+|+++|+++|++..+++++|.+|..++++++|++.|++++++.|+.
T Consensus 111 ~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 45689999999999999999999999999999999999999999999999999999999999987664
No 98
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=2.9e-13 Score=118.95 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=91.3
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH----------HHHHHHHHHHHhcCC
Q 008540 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----------KQAEKLCTKVLDLDS 479 (562)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----------~~A~~~~~~al~~~p 479 (562)
-+.+.|++|+..|++|+++.|.+... |+|+|.+++.++++ ++|+..|++||+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea---------------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence 34567999999999999999986644 88999999999875 599999999999999
Q ss_pred CCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
++..+||++|.+|..+| +|++|+++|++|++++|++...+..+..+.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999985 899999999999999999988877777554
No 99
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=99.41 E-value=5.9e-13 Score=119.00 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=72.4
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc---cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
+..||.|+++|++++.+|++|+++ +|+.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+.+
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~---------- 72 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD---------- 72 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC----------
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC----------
Confidence 567899999999999999999987 6999999999999999999999999999999999999999543
Q ss_pred CCCCeEEEEEEeecccc
Q 008540 246 PPNATLQIALELVSWKT 262 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (562)
..+++.+....|..
T Consensus 73 ---~~~v~~v~~~~f~~ 86 (171)
T 2k8i_A 73 ---ENLVQRVPKDVFMG 86 (171)
T ss_dssp ---TTSEEEEEGGGGTT
T ss_pred ---hhhEEEeeHHHCCc
Confidence 34678888888753
No 100
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=99.41 E-value=3.9e-14 Score=124.53 Aligned_cols=80 Identities=21% Similarity=0.393 Sum_probs=71.3
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~ 231 (562)
+..||.|++||++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 567899999999999999999986 489999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 232 GEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
|+.+. .+++.+.+..|.
T Consensus 82 G~~~~-------------~~v~~v~~~~f~ 98 (151)
T 1ix5_A 82 GNRNE-------------MLIQKIPRDAFK 98 (151)
T ss_dssp CSCCS-------------TTBCCEETHHHH
T ss_pred CCCCc-------------cEEEEEEHHHcC
Confidence 96543 467777777774
No 101
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=1.5e-12 Score=128.13 Aligned_cols=102 Identities=31% Similarity=0.446 Sum_probs=95.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+..+|+.+++.|+|++|+..|++|+...|.+. .+++|+|.+|.++|+|++|+.+|+++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999987643 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
|++.++++++|.+|..+|++++|+..|+++++++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999976
No 102
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=9.9e-13 Score=134.99 Aligned_cols=130 Identities=16% Similarity=0.045 Sum_probs=69.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHHH------HHHHHHhcHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAKA------LKVACNLNNAACK 458 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~nla~~~ 458 (562)
+..+...|..+.+.|++++|+..|++|+.+.|.+... ..+.....+. -...+|+++|.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4445555666666666666666666666655543221 0000000000 0112355666666
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.++|+|++|+.+|+++|+++|+|..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666555555444
No 103
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=4e-12 Score=119.76 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008540 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (562)
Q Consensus 420 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~ 499 (562)
..|.+|+..+... ..+..-...+++++|.++..+|++++|+..++++++++ +++.+++.+|.+|..+|+++
T Consensus 98 g~~~~A~~~~~~a--------l~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 98 GYLEQALSVLKDA--------ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp HHHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHH--------HHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence 5666666554421 12222345678999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 500 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
+|+..|+++++++|++..+...+..+.....+.++.
T Consensus 169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999998887777766554
No 104
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=5.2e-12 Score=115.06 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=117.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHHH------HHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAKA------LKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~nla~~~~ 459 (562)
+..+.+.|+.++++|+|++|+..|++|+++.|.+.... ++....... ....++.++|.++.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 55678899999999999999999999999987653220 000111111 12345678889999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...++.+...+++.+++. ..
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~ 163 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV-KY 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888776654 45
Q ss_pred HHhhcc
Q 008540 540 YGNMFA 545 (562)
Q Consensus 540 ~~~~f~ 545 (562)
|++..+
T Consensus 164 ~~~al~ 169 (184)
T 3vtx_A 164 FKKALE 169 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665544
No 105
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=99.37 E-value=5.8e-13 Score=124.18 Aligned_cols=79 Identities=20% Similarity=0.370 Sum_probs=70.0
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecc-----------------cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCcc
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF 231 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~ 231 (562)
...||.|++||++++ +|++|+++ .|+.|.+|.++++|||+++|.+|++|+++.|.|||++||
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY 80 (231)
T 3prb_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (231)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence 467899999999999 99999976 389999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008540 232 GEKGKSASGNEGAVPPNATLQIALELVSWK 261 (562)
Q Consensus 232 g~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 261 (562)
|+.+. .+++.+....|.
T Consensus 81 Ge~~~-------------~lv~~vp~~~f~ 97 (231)
T 3prb_A 81 GKRDP-------------SKIKLIPLSEFT 97 (231)
T ss_dssp CCCCG-------------GGEEEEETHHHH
T ss_pred CCCCh-------------HHEEecCHHHCC
Confidence 96544 467777777764
No 106
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.36 E-value=1.2e-11 Score=103.79 Aligned_cols=114 Identities=32% Similarity=0.418 Sum_probs=103.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+++.|+..|.+++...+... .+++++|.++.+.+++++|+..+++++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999998866432 247899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
|.+..+++.+|.+|..+|++++|+..|++++.++|++..+...+..+..
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888876654
No 107
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=2.4e-12 Score=132.14 Aligned_cols=132 Identities=11% Similarity=-0.030 Sum_probs=102.6
Q ss_pred HhhhHHHHHHHHHcCc-HHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHH------HHHHHHHHhcHHHHH
Q 008540 399 AGKKKEQGNTLFKAGK-YARASKRYEKAVKYIEYDTSF-------------GDEEKKQA------KALKVACNLNNAACK 458 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~-~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~------~~~~~~~~~nla~~~ 458 (562)
+..+..+|..+...|+ +++|+..|++|+.+.|.+... ..+..... ..-...+|+|+|.++
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence 4456677777777775 777777777777776653211 01111111 111245689999999
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLA-----EFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~-l~~~~~A-----~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.++|+|++|+.+|+++|+++|++..+|+++|.+|.. .+.+++| +++|++|+.++|++..++..++.+.....
T Consensus 211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999 5554888 59999999999999999999999987754
No 108
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.35 E-value=8.8e-13 Score=111.15 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=83.7
Q ss_pred HcCcHHHHHHHHHHHHHH---hhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 008540 411 KAGKYARASKRYEKAVKY---IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR 487 (562)
Q Consensus 411 ~~g~~~~A~~~y~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~ 487 (562)
..|+|++|+..|++|+++ .|. ...+++++|.+|.++|+|++|+..++++++++|++..++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 368899999999999987 343 33458999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 488 ~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
+|.+|..+|++++|+..|++++.++|+++.+....
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999999998765433
No 109
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=99.35 E-value=1.2e-12 Score=115.52 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCCCCeEEEEEEEEeCCCeEeecccceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCC
Q 008540 169 PKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPN 248 (562)
Q Consensus 169 ~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ip~~ 248 (562)
+..||.|+++|+++ .+|++|+++. +.|.+|.++++|||+++|.+|++|+++.|.|||+.|||+. +
T Consensus 3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------------~ 67 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------------D 67 (158)
T ss_dssp CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------------C
T ss_pred CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------------C
Confidence 46789999999999 8999999888 9999999999999999999999999999999999999954 4
Q ss_pred CeEEEEEEeecccc
Q 008540 249 ATLQIALELVSWKT 262 (562)
Q Consensus 249 ~~l~~~v~l~~~~~ 262 (562)
..+++.|.+..|..
T Consensus 68 ~~lv~~v~~~~f~~ 81 (158)
T 3cgm_A 68 PEGVQVVPLSAFPE 81 (158)
T ss_dssp GGGEEEEEGGGSCT
T ss_pred cceEEEEEHHHCCC
Confidence 56889999988853
No 110
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.34 E-value=1.7e-12 Score=137.57 Aligned_cols=120 Identities=26% Similarity=0.408 Sum_probs=109.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
.+.+..+...|+.++++|+|++|+..|++|+++.|... .+++|+|.+|.++++|++|+.++++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35677889999999999999999999999999977643 348999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
+++|++..+++++|.+|..+|++++|++.|++|++++|++..+...++.+....+
T Consensus 68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 122 (477)
T 1wao_1 68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122 (477)
T ss_dssp HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988888888744443
No 111
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.32 E-value=1.8e-12 Score=134.09 Aligned_cols=100 Identities=25% Similarity=0.446 Sum_probs=89.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~ 130 (562)
..++.||.|+|||+++. ||+.|+++. +.|+.|.+|.|+++|||+++|.||++|++++|.+|++.+||..+. +
T Consensus 156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a 227 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K 227 (432)
T ss_dssp SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence 56899999999999995 999999987 489999999999999999999999999999999999999998764 5
Q ss_pred CCcEEEEEEEeEeeeccccccCcceeEe
Q 008540 131 NATLQFDVELLSWTSVKDICKDGGIIKK 158 (562)
Q Consensus 131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~ 158 (562)
+.+++|+|+|+++........|..+++.
T Consensus 228 g~~~~F~V~v~~v~~~~lpeldDEfak~ 255 (432)
T 1w26_A 228 GKAAKFAINLKKVEERELPELTAEFIKR 255 (432)
T ss_dssp SCEEEEEEECCEECCEECCCCSHHHHTT
T ss_pred CceEEEEEEEEEEeccCCCCcchHHHHH
Confidence 6899999999999876666666666653
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.6e-11 Score=114.88 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=91.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
..|..+++.|+|++|+..|++++++.|.+.. +++++|.++..+|++++|+.+|+++++++|++..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVD---------------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 4999999999999999999999999887543 3889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 484 ALYRRAQAYIQ-----------------------------------MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 484 a~~~~a~a~~~-----------------------------------l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+++++|.+|+. +++|++|+.+|++|++++|++ ++...+.++.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 88888777643 346889999999999999975 3445555543
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.30 E-value=1.3e-12 Score=115.68 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=88.4
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.+++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+..|++|++++|+++.++..++.+...
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhccc
Q 008540 529 MKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~~ 546 (562)
+.+..++. ..|.+....
T Consensus 117 lg~~~eA~-~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAK-ECFELVIQH 133 (151)
T ss_dssp TTCHHHHH-HHHHHHHHH
T ss_pred cCCHHHHH-HHHHHHHHh
Confidence 88877655 356655543
No 114
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=3.2e-11 Score=109.78 Aligned_cols=118 Identities=15% Similarity=0.058 Sum_probs=92.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------C-hHHHHHH------HHHHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------G-DEEKKQA------KALKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------~-~~~~~~~------~~~~~~~~~nla~~~~ 459 (562)
+..+...|..+++.|+++.|+..+.+++...+..... . ....... ......++.++|.+|.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4456777788888888888888888877765543211 0 0000000 1112446789999999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
++|+|++|+..++++++++|+++.+++++|.+|..+|++++|+.+|++|++++|++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999999999999999999999999999999999999999874
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=7.1e-12 Score=103.28 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=93.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+|++|+..|++++...+... .+++++|.++..+++|++|+..++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 70 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYVINVI 70 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34577899999999999999999999999876533 237899999999999999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008540 479 SR--NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 479 p~--~~ka~~~~a~a~~~l-~~~~~A~~~~~~al~l~p~~ 515 (562)
|. +..+++.+|.+|..+ |++++|+++|++++...|.+
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99 999999999999999 99999999999999999976
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=2.4e-11 Score=110.04 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=100.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH-HhhccCH--HHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~k~~~~--~~A~~~~~~al 475 (562)
+..+...|..++..|+|+.|+..|.+++.+.|.+. .+++++|.+ +...+++ ++|+..+++++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45678899999999999999999999999987643 237899999 8899999 99999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+.+|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999876555554443
No 117
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=2.9e-11 Score=114.24 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+...|..++..|+|++|+..|++|++..|.. ..+++++|.+|.++|++++|+..++++++++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 45568999999999999999999999887753 334889999999999999999999999999999
Q ss_pred CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 008540 481 NV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 481 ~~-------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~~ 532 (562)
+. .+|+++|.++..+|++++|+..|++|++++|+ +..+...++.+.......
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 98 77999999999999999999999999999999 888888888887655544
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=2e-11 Score=113.77 Aligned_cols=129 Identities=22% Similarity=0.191 Sum_probs=110.5
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|+.++..|+|++|+..|++++. . ...+++++|.+|.++|+|++|+.++++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---P---------------HSRICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS---C---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC---C---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455678999999999999999999999851 1 1235899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
+|++..+++++|.+|..+|++++|+..|++++++.|++. .+...++.+...+.+..++. ..|.
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 145 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQLA 145 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHHH
Confidence 999999999999999999999999999999999998877 88888888887777665543 3455
Q ss_pred hhcc
Q 008540 542 NMFA 545 (562)
Q Consensus 542 ~~f~ 545 (562)
+...
T Consensus 146 ~al~ 149 (213)
T 1hh8_A 146 LATS 149 (213)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5443
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.27 E-value=4.3e-11 Score=102.37 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=88.5
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
....+.|+|.+|+++|+|++|+..|+++|+++|.++.+|+++|.||..+|++++|+.+|++|++++|++..+...++.+.
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008540 527 EKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 527 ~~~~~~~~~~~~~~~~~f~ 545 (562)
..+++..++. ..|++...
T Consensus 92 ~~~~~~~~A~-~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQ-RAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHH-HHHHHHHH
T ss_pred HHCCCHHHHH-HHHHHHHH
Confidence 8888877654 46665554
No 120
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.24 E-value=7.6e-11 Score=118.31 Aligned_cols=123 Identities=24% Similarity=0.350 Sum_probs=109.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
......|..+++.|++++|+..|++++...|.+. .....++.++|.++.++|++++|+..++++++.+|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 3455679999999999999999999999877532 23445578899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
+++.+++++|.+|..+|++++|+..|+++++++|++..++..+..+...+++.+
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998887776543
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.24 E-value=9.9e-11 Score=99.31 Aligned_cols=129 Identities=27% Similarity=0.381 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+...|..++..|++++|+..|++++...+... .+++++|.++...+++++|+..+++++...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch---------------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 466789999999999999999999998765432 23778999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+..+++.+|.++..+|++++|+..|++++.+.|.+..+...+..+....++..+.. ..+..+..
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~ 131 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHc
Confidence 99999999999999999999999999999999999888888888776666555443 35555543
No 122
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=5.2e-11 Score=113.77 Aligned_cols=112 Identities=25% Similarity=0.320 Sum_probs=82.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+|++|+..|++++...|.+. .+++++|.++.++|++++|+..++++++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 44566777777777777777777777777665432 236677777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTL 525 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~------p~~~~~~~~l~~l 525 (562)
|++..+++.+|.+|..+|++++|+..|+++++++ |++..+...+..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 7777777777777777777777777777777777 7776666666543
No 123
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.21 E-value=1.9e-10 Score=111.19 Aligned_cols=114 Identities=19% Similarity=0.055 Sum_probs=102.6
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|++++|+..|++++...|... .+++++|.++..+|+|++|+..++++++
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999877533 3488999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
++|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999998655555444
No 124
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.21 E-value=4.9e-12 Score=129.06 Aligned_cols=101 Identities=20% Similarity=0.428 Sum_probs=89.2
Q ss_pred CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCC
Q 008540 51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP 130 (562)
Q Consensus 51 ~~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~ 130 (562)
..++.||.|+|||+++. ||+.|+++. +.|+.|.+|.|++||||+++|.||++|++++|.|+++..||..+. +
T Consensus 159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----a 230 (392)
T 1t11_A 159 EAAENGKRVSIDFVGSI-DGVEFEGGK--AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K 230 (392)
T ss_dssp CCCCTTCEEEEEEEEES-SSSCCTTCE--EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred CCCCCCCEEEEEEEEEE-CCEEccCCC--ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----C
Confidence 46889999999999995 999999884 479999999999999999999999999999999998788987664 6
Q ss_pred CCcEEEEEEEeEeeeccccccCcceeEee
Q 008540 131 NATLQFDVELLSWTSVKDICKDGGIIKKI 159 (562)
Q Consensus 131 ~~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (562)
|.++.|+|+|+++........|..+++.+
T Consensus 231 Gk~~~F~V~v~~i~~~~lpeldDEfak~~ 259 (392)
T 1t11_A 231 GKAAKFAIKVNKVEARELPELNDEFVARF 259 (392)
T ss_dssp SCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred CCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence 79999999999999877777777777643
No 125
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.21 E-value=5.8e-11 Score=128.67 Aligned_cols=131 Identities=7% Similarity=0.013 Sum_probs=115.0
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|+|++|+..|++|+++.|.+. .+++++|.+|..+|++++|+.+++++++++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999877543 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM---KEYNKKEAKFYGNMFA 545 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~---~~~~~~~~~~~~~~f~ 545 (562)
|++..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...+ .+..++. ..|++...
T Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~al~ 156 (568)
T 2vsy_A 88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAAVA 156 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999999999999888777 5554433 35555443
No 126
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.21 E-value=2.7e-10 Score=110.07 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=109.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh--------ccCHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL 470 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------~~~~~~A~~~ 470 (562)
...+...|..+++.|+|++|+..|+++++..|.+.. ...+++++|.|+++ ++++++|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 456778888899999999999999999988775542 23458899999999 9999999999
Q ss_pred HHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH-
Q 008540 471 CTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKM- 529 (562)
Q Consensus 471 ~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~~- 529 (562)
++++++.+|++..+. +.+|.+|..+|++++|+..|+++++.+|++ ..+...++.+...+
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 999999999986666 999999999999999999999999999984 45777777776655
Q ss_pred ---------HHHHHHHHHHHHhhcccc
Q 008540 530 ---------KEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 530 ---------~~~~~~~~~~~~~~f~~~ 547 (562)
.+.+ +....|+++....
T Consensus 200 ~~~~~~~~~~~~~-~A~~~~~~~~~~~ 225 (261)
T 3qky_A 200 EQSVRARQPERYR-RAVELYERLLQIF 225 (261)
T ss_dssp HTSCGGGHHHHHH-HHHHHHHHHHHHC
T ss_pred ccchhhcccchHH-HHHHHHHHHHHHC
Confidence 3333 3344666665544
No 127
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=5.2e-11 Score=115.11 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=109.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|+|++|+..|++++...|.+.. ...+++++|.||+++|+|++|+..++++++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 567889999999999999999999999998876531 24458899999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHH
Q 008540 479 SRN---VKALYRRAQAYIQ--------MADLDLAEFDIKKALEIDPDNRDVK-----------------LEYKTLKEKMK 530 (562)
Q Consensus 479 p~~---~ka~~~~a~a~~~--------l~~~~~A~~~~~~al~l~p~~~~~~-----------------~~l~~l~~~~~ 530 (562)
|++ ..+++++|.+|.. +|++++|+..|+++++++|++..+. ..++.+....+
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 854 6799999999999 9999999999999999999986555 34455555555
Q ss_pred HHHHHHHHHHHhhccc
Q 008540 531 EYNKKEAKFYGNMFAK 546 (562)
Q Consensus 531 ~~~~~~~~~~~~~f~~ 546 (562)
+..++. ..|.+....
T Consensus 163 ~~~~A~-~~~~~~l~~ 177 (261)
T 3qky_A 163 LYEAAA-VTYEAVFDA 177 (261)
T ss_dssp CHHHHH-HHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHH
Confidence 444433 355555443
No 128
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=7e-11 Score=125.11 Aligned_cols=122 Identities=16% Similarity=0.024 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHc---------CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--------c
Q 008540 400 GKKKEQGNTLFKA---------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------K 462 (562)
Q Consensus 400 ~~~~~~G~~~~~~---------g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~ 462 (562)
..+...|..++.. |+|++|+..|++|+++.|.+.. +++++|.+|..+ +
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR---------------SWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHHHhhccccc
Confidence 5677889999999 9999999999999999876543 388999999999 9
Q ss_pred CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
+|++|+..|+++++++| +++.+|+++|.+|..+|++++|++.|++|++++|++..++..+..+...+.+..+.-
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999998888887766544
No 129
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.20 E-value=2.2e-10 Score=103.22 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=112.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
...+...|..++..|++++|+..|++++...+... .++.++|.++...+++++|+..+++++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------------KVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34567888999999999999999999998866432 347899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++..++. ..|.+....
T Consensus 107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~ 173 (186)
T 3as5_A 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHc
Confidence 9999999999999999999999999999999999999999999988887777665443 455555443
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.19 E-value=2.1e-11 Score=107.52 Aligned_cols=110 Identities=11% Similarity=-0.021 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 008540 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499 (562)
Q Consensus 420 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~ 499 (562)
..|++++.+.|.+ ..+++++|.++++.|+|++|+..+++++..+|+++.+|+.+|.+|..+|+++
T Consensus 8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence 3466777665543 3348899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 500 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|+..|++|+.++|++..+...++.+...+.+..++. ..|.+...
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~ 117 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE-SGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 9999999999999999999999998887777766554 34444443
No 131
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=2.7e-10 Score=107.66 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=96.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+..+|..+++.|+|++|+..|++++...|.... ...+++++|.||+++|+|++|+..++++++.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 345778899999999999999999999998876442 23458899999999999999999999999999
Q ss_pred CCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540 479 SRNVK---ALYRRAQAYIQ------------------MADLDLAEFDIKKALEIDPDNRDVKL 520 (562)
Q Consensus 479 p~~~k---a~~~~a~a~~~------------------l~~~~~A~~~~~~al~l~p~~~~~~~ 520 (562)
|++.. ++|++|.+|.. +|++++|+..|+++++.+|++..+..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99875 89999999987 57899999999999999999975543
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=8.7e-11 Score=109.40 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=94.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|+|++|+..|++|+.+.|... .+++++|.+|.++|+|++|+.++++++++.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 35688999999999999999999999999876543 348899999999999999999999999988
Q ss_pred CCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 479 SRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 479 p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
|.+. .+++++|.+|..+|++++|+..|+++++++|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 8776 9999999999999999999999999999999873
No 133
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.18 E-value=1.6e-10 Score=111.76 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=45.8
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
+.++|.++.++|++++|+.+++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|.+..+...++
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666666655555555
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=1.3e-11 Score=136.59 Aligned_cols=126 Identities=14% Similarity=0.090 Sum_probs=68.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-------------hHHHHHHHH------HHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-------------DEEKKQAKA------LKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~------~~~~~~~nla~~~~ 459 (562)
+..+..+|..+++.|+|++|+..|++|++..|.+.... ++-....+. -...+++|+|.++.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44566666666666777777777776666665433210 000000000 00122555566666
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
++|+|++ +.+|+++++++|++..+|+++|.+|..+|++++|+++|++|++++|++..++..++.+
T Consensus 513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 6666666 6666666666666666666666666666666666666666666666655555555444
No 135
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.1e-10 Score=109.43 Aligned_cols=146 Identities=18% Similarity=0.181 Sum_probs=117.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-----h------HHHHHHHHHHHHHHhcHHHHHhhccCHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-----D------EEKKQAKALKVACNLNNAACKLKLKDYKQA 467 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~------~~~~~~~~~~~~~~~nla~~~~k~~~~~~A 467 (562)
+..+...|..+++.|++++|+..|++++.+.+...... . +...........++.++|.++..+|+|++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 67788999999999999999999999999754311000 0 000001123456788999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+..+++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...++.+...+++..++. ..|++...
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL-ETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888777665543 35555443
No 136
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=1.2e-10 Score=123.24 Aligned_cols=130 Identities=15% Similarity=-0.008 Sum_probs=115.1
Q ss_pred HhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
+..+..+|..++..|+| ++|+..|++|+++.|... .+++++|.+|.++|+|++|+.+|++++++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV---------------EAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788999999999999 999999999999987643 34889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008540 478 DSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM--------KEYNKKEAKFY 540 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l---------~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~--------~~~~~~~~~~~ 540 (562)
+|+ ..+++++|.+|..+ |++++|+..|++|++++|++..++..++.+...+ .+..++. ..|
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~-~~~ 244 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL-SAY 244 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH-HHH
Confidence 999 79999999999999 9999999999999999999999999999998777 6665543 355
Q ss_pred Hhhcc
Q 008540 541 GNMFA 545 (562)
Q Consensus 541 ~~~f~ 545 (562)
.+...
T Consensus 245 ~~al~ 249 (474)
T 4abn_A 245 AQAEK 249 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 137
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.16 E-value=1.3e-10 Score=117.84 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=105.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|++++|+..|++++...|.+. .+++++|.+|.++|++++|+..++++++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34567788889999999999999999998876543 247889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|++..+++++|.+|..+|++++|+..|+++++++|++ ..++..++.+...+.+.+..++ ...+-...
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~l~~ 356 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA-ANLGDLDV 356 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH-HHTTCCGG
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH-HHHhhHHH
Confidence 9999999999999999999999999999999998873 4566777777666665544332 33333344
Q ss_pred cCC
Q 008540 547 MTE 549 (562)
Q Consensus 547 ~~~ 549 (562)
+.+
T Consensus 357 ~~~ 359 (365)
T 4eqf_A 357 LLR 359 (365)
T ss_dssp GTT
T ss_pred HHH
Confidence 433
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=4.7e-11 Score=132.25 Aligned_cols=94 Identities=13% Similarity=0.016 Sum_probs=82.4
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
..+++++|.+++++|+|++|+.+|+++++++|++..+++++|.+|..+|++++ +++|++|++++|++..++..++.+..
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999 99999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhh
Q 008540 528 KMKEYNKKEAKFYGNM 543 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~ 543 (562)
.+.+.+++. ..|.+.
T Consensus 546 ~~g~~~~A~-~~~~~a 560 (681)
T 2pzi_A 546 AEGDRVGAV-RTLDEV 560 (681)
T ss_dssp HTTCHHHHH-HHHHTS
T ss_pred HcCCHHHHH-HHHHhh
Confidence 777766543 344443
No 139
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.16 E-value=9e-12 Score=102.98 Aligned_cols=94 Identities=29% Similarity=0.418 Sum_probs=68.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|+|++|+..|++|+.+.|.+. .+++|+|.|+.++|+|++|+.+|+++++++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45567777777777777777777777777766432 236777777777777777777777777777
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008540 479 SRN------VKALYRRAQAYIQMADLDLAEFDIKK 507 (562)
Q Consensus 479 p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~ 507 (562)
|++ ..+++++|.++..+|+++.|+..+++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 777 77777777777777777766655543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.15 E-value=2e-11 Score=110.48 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
++...++.++..|+|+.|+..|++++...|.+.. +++++|.+|..+++|++|+..++++++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 76 (177)
T 2e2e_A 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76 (177)
T ss_dssp CSSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred HHhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3445556678899999999999999998775432 3889999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 481 NVKALYRRAQA-YIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 481 ~~ka~~~~a~a-~~~l~~~--~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
+..+++.+|.+ |...|++ ++|+..|+++++++|++..+...++.+....++..++. ..|.+.+...
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 145 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-ELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH-HHHHHHHhhC
Confidence 99999999999 8899999 99999999999999999999999999888877776554 4666665543
No 141
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=1.9e-10 Score=103.64 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=114.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|++++|+..|++++...+.. ..++.++|.++..++++++|+..++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45678889999999999999999999998876543 234789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|.+..+++.+|.+|..+|++++|+..|++++.++|.+..+...++.+....++..+.. ..+.+...
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~ 138 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI-DSFKIALG 138 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH-HHHHHHHh
Confidence 99999999999999999999999999999999999999998888888877766665443 35555444
No 142
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.14 E-value=4.5e-10 Score=106.35 Aligned_cols=133 Identities=17% Similarity=0.072 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHHhh
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKLK 460 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~~k 460 (562)
..+...|..++..|++++|+..|++++...+..... ..+-....+. ....++.++|.++.+
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345556666666666666666666666665432111 0000000000 001224455555555
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~ 532 (562)
+|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+....++.
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR 209 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH
Confidence 555555555555555555555555555555555555555555555555555555555555555554444433
No 143
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=2.5e-10 Score=95.37 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 008540 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496 (562)
Q Consensus 417 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~ 496 (562)
.|+..|++++...|.+. .+++++|.+|..+|+|++|+..|++++.++|++..+++.+|.+|..+|
T Consensus 3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 57889999998877543 248899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 008540 497 DLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 497 ~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~~~~ 531 (562)
++++|+..|+++++++|. +......+..+...+..
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999885 44455555544444433
No 144
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.13 E-value=2e-10 Score=116.24 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=103.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|++++|+..|++++.+.|... .+++++|.++.++|++++|+..++++++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567788889999999999999999998866532 347889999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----------RDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~l~~~~~~~~~~~ 536 (562)
|++..+++++|.+|..+|++++|+..|++++.++|++ ..++..+..+...+.+.+...
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999999999999999999999999999999998888 778888888877776655443
No 145
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.13 E-value=3.5e-10 Score=107.07 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=72.5
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
.++.++|.++.++|++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999999999999999988888776644
No 146
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=4.6e-10 Score=110.70 Aligned_cols=130 Identities=14% Similarity=0.016 Sum_probs=105.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-cCHHHHHHHHHHHH
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL 475 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al 475 (562)
..+..+.+.|+.+.+.|+|++|+.+|++|+.+.+..... .....++.|+|.+|..+ |++++|+.+|++++
T Consensus 75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 346778899999999999999999999999988754321 22345688999999996 99999999999999
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHHHHHH
Q 008540 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~~~~~~~~~~ 535 (562)
++.|.+ ..++.++|.+|..+|+|++|+..|++++++.|++.. +...+..+...+.+..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998754 568999999999999999999999999999998753 334555555555544433
No 147
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.13 E-value=6.2e-10 Score=115.98 Aligned_cols=121 Identities=25% Similarity=0.355 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
......|..+++.|++++|+..|++++...|.+. .....++.++|.++.++|++++|+..|++++.++|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 3345669999999999999999999999876532 22345688999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
++..+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+....+.
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999887666544
No 148
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.12 E-value=5.1e-10 Score=110.43 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=68.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHH----HhhccCHHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC----KLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~k~~~~~~A~~~~~~a 474 (562)
...+...|..+.+.|++++|+..|+++++..|... ..+++.+ +...+++++|+..++++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~ 192 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 34566788888899999999999999988765421 1122211 11235555555555555
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
++.+|+++.+++.+|.+|..+|++++|+..|++|++++|+++++...+..+...+.+
T Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 555555555555555555555555555555555555555555555555544444433
No 149
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=2.1e-10 Score=103.96 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
...|+..++++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|+. ..++..+..+...+.+..+.. ..|+
T Consensus 90 ~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA-SKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH-HHHH
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH-HHHH
Confidence 3346777788888889999999999999999999999999999999999875 458888887777666554433 3555
Q ss_pred hhcc
Q 008540 542 NMFA 545 (562)
Q Consensus 542 ~~f~ 545 (562)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 150
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.12 E-value=4.6e-10 Score=112.53 Aligned_cols=111 Identities=26% Similarity=0.282 Sum_probs=101.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|+.++..|+|++|+..|++++...|.+. .+++++|.++..+|++++|+..++++++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999877543 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP---DNRDVKLEYKT 524 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p---~~~~~~~~l~~ 524 (562)
|++..+++.+|.+|..+|++++|+..|+++++++| ++..+...+..
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence 99999999999999999999999999999999999 88877777743
No 151
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=2.8e-10 Score=112.03 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=99.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHH-----------
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA----------- 467 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A----------- 467 (562)
...+...|..+++.|++++|+..|++++...|.+... ++++|.+++.+|++++|
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI---------------GLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH---------------HHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH---------------HHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 3567889999999999999999999999998875432 55666666666666655
Q ss_pred -----------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 008540 468 -----------------------EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEY 522 (562)
Q Consensus 468 -----------------------~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~--~~~~~~l 522 (562)
+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 455566677789999999999999999999999999999999999998 7788888
Q ss_pred HHHHHHHHHHHHH
Q 008540 523 KTLKEKMKEYNKK 535 (562)
Q Consensus 523 ~~l~~~~~~~~~~ 535 (562)
..+...+.+....
T Consensus 262 ~~~~~~~g~~~~a 274 (287)
T 3qou_A 262 QEILAALGTGDAL 274 (287)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHHcCCCCcH
Confidence 8887777654443
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=1e-09 Score=92.87 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=85.8
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
++++|.++++.|++++|+..++++++.+|++..+|+.+|.+|..+|++++|+..|++|++++|++..++..++.+.....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHhhcc
Q 008540 531 EYNKKEAKFYGNMFA 545 (562)
Q Consensus 531 ~~~~~~~~~~~~~f~ 545 (562)
+..++. ..|.+...
T Consensus 100 ~~~~A~-~~~~~al~ 113 (121)
T 1hxi_A 100 NANAAL-ASLRAWLL 113 (121)
T ss_dssp HHHHHH-HHHHHHHC
T ss_pred CHHHHH-HHHHHHHH
Confidence 877655 35555544
No 153
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.10 E-value=3.5e-10 Score=96.72 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=78.2
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKL 520 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~-------~~~ 520 (562)
..++.|+|.+++++|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+++|++|++++|++.. +..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4457899999999999999999999999999999999999999999999999999999999999987643 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 521 EYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 521 ~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
.++.+...+....++. ..|.+..
T Consensus 88 ~lg~~~~~~~~~~~A~-~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAV-QWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHH
Confidence 4555555555554433 3454443
No 154
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=3.7e-10 Score=111.35 Aligned_cols=112 Identities=24% Similarity=0.263 Sum_probs=91.7
Q ss_pred HHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~-g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
.+..+...|..+... |++++|+.+|++|+++.+..... .....+++++|.++.++|+|++|+.+|+++++
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356788999999996 99999999999999998854321 12345688999999999999999999999999
Q ss_pred cCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 477 LDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 477 ~~p~~~k-------a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
+.|++.. +++++|.||..+|++++|+..|+++++++|++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9987643 68999999999999999999999999999987643
No 155
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.10 E-value=7e-10 Score=105.91 Aligned_cols=85 Identities=15% Similarity=0.031 Sum_probs=53.8
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.+++++|.++.++|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...+..+...
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred HHHHH
Q 008540 529 MKEYN 533 (562)
Q Consensus 529 ~~~~~ 533 (562)
..+..
T Consensus 222 ~g~~~ 226 (252)
T 2ho1_A 222 FEDRD 226 (252)
T ss_dssp TTCHH
T ss_pred ccCHH
Confidence 44443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.10 E-value=8e-10 Score=93.81 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=85.5
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
...+.++|.++++.|+|++|+..++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..+...++.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008540 528 KMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~f 544 (562)
.+++..++. ..|.+..
T Consensus 84 ~~~~~~~A~-~~~~~al 99 (126)
T 3upv_A 84 AVKEYASAL-ETLDAAR 99 (126)
T ss_dssp HTTCHHHHH-HHHHHHH
T ss_pred HHhCHHHHH-HHHHHHH
Confidence 877766544 3444443
No 157
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=2.3e-10 Score=116.02 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=107.1
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
..|..+...|++++|+..|++++...|.... ..+++++|.+|.++|++++|+..++++++.+|++..
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3488999999999999999999999776221 224889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+++.+|.+|..+|++++|+..|+++++++|++..+...++.+...+.+..++. ..|++....
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~ 310 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV-SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh
Confidence 99999999999999999999999999999999999999999988877765543 456655543
No 158
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.10 E-value=1e-09 Score=102.29 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=50.9
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP-DNRDVKLEYKTLKE 527 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p-~~~~~~~~l~~l~~ 527 (562)
.+++++|.++.++|++++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++| .+..+...+..+..
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAK 193 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666 66555554444444
Q ss_pred HHH
Q 008540 528 KMK 530 (562)
Q Consensus 528 ~~~ 530 (562)
..+
T Consensus 194 ~~~ 196 (225)
T 2vq2_A 194 ALG 196 (225)
T ss_dssp HTT
T ss_pred hcC
Confidence 333
No 159
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=4.4e-10 Score=118.99 Aligned_cols=106 Identities=30% Similarity=0.320 Sum_probs=98.7
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
+.+.+..+..+|+.+++.|+|.+|+..|++++...|+ ..+++++|.|+.++|+|++|+..|+++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 5677899999999999999999999999999998752 234889999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
++.+|++..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 107 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999764
No 160
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.09 E-value=8.4e-10 Score=102.86 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=76.9
Q ss_pred HHHhcHHHHHhhc-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKL-KDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 449 ~~~~nla~~~~k~-~~~~~A~~~~~~al~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
.++.++|.++..+ +++++|+..++++++ .+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3477888888888 999999999999888 6667788888999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 008540 526 KEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~f~ 545 (562)
.....+..++. ..+.+...
T Consensus 157 ~~~~~~~~~A~-~~~~~~~~ 175 (225)
T 2vq2_A 157 KMLAGQLGDAD-YYFKKYQS 175 (225)
T ss_dssp HHHHTCHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHH-HHHHHHHH
Confidence 77776665543 35555544
No 161
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.09 E-value=2.5e-10 Score=113.06 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=114.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|++++|+..|++++...|... .++.++|.++..+|++++|+..++++++.+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 35577889999999999999999999999876543 248899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~------------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|++..+++.+|.+|..+|++++|+..|++++.++|+ +..+...+..+...+.+.+++. ..+++....
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~ 315 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE-LTYAQNVEP 315 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH-HHTTCCSHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHh
Confidence 999999999999999999999999999999999999 7888888888888777765543 355444444
Q ss_pred c
Q 008540 547 M 547 (562)
Q Consensus 547 ~ 547 (562)
+
T Consensus 316 ~ 316 (327)
T 3cv0_A 316 F 316 (327)
T ss_dssp H
T ss_pred c
Confidence 3
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.09 E-value=1.3e-10 Score=101.32 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=85.6
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
..++++|.++++.|+|++|+..+++++..+|++..+|+.+|.+|..+|++++|+.+|++|+.++|++..+...++.+...
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhcc
Q 008540 529 MKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~ 545 (562)
+.+..++. ..|.+...
T Consensus 99 ~g~~~~A~-~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAE-SGFYSARA 114 (142)
T ss_dssp TTCHHHHH-HHHHHHHH
T ss_pred cCCHHHHH-HHHHHHHH
Confidence 87776554 35554443
No 163
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.07 E-value=6.4e-10 Score=113.82 Aligned_cols=146 Identities=16% Similarity=0.073 Sum_probs=92.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~ 459 (562)
+..+...|..+.+.|++++|+..|++++.+.|..... .++-..... .....+++++|.++.
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 4455666667777777777777777776665542110 000000000 011345667777777
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
++|++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.....+..++. ..
T Consensus 249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 327 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RL 327 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 77777777777777777777777777777777777777777777777777777777777777776665555554432 34
Q ss_pred HHhhcc
Q 008540 540 YGNMFA 545 (562)
Q Consensus 540 ~~~~f~ 545 (562)
|.++..
T Consensus 328 ~~~al~ 333 (388)
T 1w3b_A 328 YRKALE 333 (388)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 544443
No 164
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=1.4e-09 Score=102.67 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=107.4
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh------------------c
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------L 461 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k------------------~ 461 (562)
..+...|..+++.|+|++|+..|+++++..|.+... ..+++++|.++.+ +
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 109 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDP 109 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence 457789999999999999999999999998876532 1235666766665 6
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008540 462 KDYKQAEKLCTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE 521 (562)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~ 521 (562)
+++++|+..++++++.+|++..+. +.+|.+|..+|++++|+..|+++++..|+++ ++...
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL 189 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence 899999999999999999987654 6789999999999999999999999999986 56777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 008540 522 YKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
++.+..++++..+.. ..++.+.
T Consensus 190 l~~~~~~~g~~~~A~-~~~~~l~ 211 (225)
T 2yhc_A 190 MENAYRQMQMNAQAE-KVAKIIA 211 (225)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHHHHHcCCcHHHH-HHHHHHH
Confidence 777777777766553 3455443
No 165
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.07 E-value=1.2e-09 Score=105.54 Aligned_cols=118 Identities=18% Similarity=0.132 Sum_probs=102.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++..|++++|+..|+++++..|.... ++.++|.+|.++|+|++|+..++++++.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 138 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence 344678999999999999999999999998876543 38899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
|.+..+++.+|...+..+++++|+..|+++++++|++..+...++.+...+..
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 99999999999444445599999999999999999998888888777666543
No 166
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.07 E-value=4.7e-10 Score=119.71 Aligned_cols=116 Identities=25% Similarity=0.358 Sum_probs=99.8
Q ss_pred cccCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 387 ~~~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (562)
...++.+++...+..+..+|+.+++.|+|++|+..|++++...|.+. .+++++|.||.++|+|++
T Consensus 13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~ 77 (537)
T 3fp2_A 13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---------------VFYSNISACYISTGDLEK 77 (537)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHH
Confidence 44578888999999999999999999999999999999999987643 348999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
|+..|+++++++|++..+++.+|.+|..+|++++|+..|+ ++.++|+....
T Consensus 78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 9999999999999999999999999999999999999996 88999887543
No 167
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.06 E-value=1.6e-09 Score=112.93 Aligned_cols=114 Identities=25% Similarity=0.258 Sum_probs=102.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..+++.|+|.+|+..|++++...|.+. .+++++|.++.++|++++|+..++++++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4577889999999999999999999999999876543 3488999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTL 525 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~---~~~~~l~~l 525 (562)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++. .+...+..+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 666655433
No 168
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.06 E-value=7.3e-10 Score=105.79 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=78.2
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~--~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
.+++++|.++..+|++++|+..+++++. .+|.+..+++.+|.+|..+|++++|+..|+++++++|.+..+...+..+.
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 4577888999999999999999999988 77888889999999999999999999999999999998888888888877
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008540 527 EKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 527 ~~~~~~~~~~~~~~~~~f~ 545 (562)
...++..++. ..+.++..
T Consensus 186 ~~~g~~~~A~-~~~~~~~~ 203 (252)
T 2ho1_A 186 YKEREYVPAR-QYYDLFAQ 203 (252)
T ss_dssp HHTTCHHHHH-HHHHHHHT
T ss_pred HHcCCHHHHH-HHHHHHHH
Confidence 7776665543 35555544
No 169
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.4e-09 Score=89.47 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=65.0
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
..++++|.+++++|+|++|+..++++++++|++..+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999998
No 170
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.05 E-value=9.6e-10 Score=112.49 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~~ 459 (562)
...+...|..+...|++++|+..|.+++...|..... ..+-....+. ....+++++|.++.
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4567789999999999999999999999987753211 0000011111 12345677788888
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
..+++++|+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.....+..+.. ..
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 293 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE-DC 293 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH-HH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HH
Confidence 88888888888888888888888888888888888888888888888888888888877777777766666555443 34
Q ss_pred HHhhcc
Q 008540 540 YGNMFA 545 (562)
Q Consensus 540 ~~~~f~ 545 (562)
|.++..
T Consensus 294 ~~~al~ 299 (388)
T 1w3b_A 294 YNTALR 299 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.05 E-value=2e-09 Score=85.19 Aligned_cols=81 Identities=33% Similarity=0.419 Sum_probs=75.1
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
..+++++|.++.++++|++|+..+++++..+|++..+++++|.+|..+|++++|+..|+++++++|++..+...++.+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999988888877654
Q ss_pred H
Q 008540 528 K 528 (562)
Q Consensus 528 ~ 528 (562)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
No 172
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.05 E-value=2.6e-09 Score=105.89 Aligned_cols=145 Identities=10% Similarity=-0.004 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------------HHHHHHHH------HHHHHHhcHHHHHhh
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------------EEKKQAKA------LKVACNLNNAACKLK 460 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~------~~~~~~~nla~~~~k 460 (562)
..+...|..++..|+|++|+..|++++...|....... +-...... ....+++++|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34566777888888888888888888877766543310 00000000 112346677777777
Q ss_pred cc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 461 LK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 461 ~~-~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
++ ++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+.....+..++. ..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE-RF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH-HH
Confidence 77 77777777777777777777777777777777777777777777777777777666666666666655554433 34
Q ss_pred HHhhcc
Q 008540 540 YGNMFA 545 (562)
Q Consensus 540 ~~~~f~ 545 (562)
|.+...
T Consensus 182 ~~~al~ 187 (330)
T 3hym_B 182 FSQALS 187 (330)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 554443
No 173
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.05 E-value=2.3e-09 Score=108.31 Aligned_cols=147 Identities=8% Similarity=-0.016 Sum_probs=117.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHH----HHHH-----
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKK----QAKA----- 445 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~----~~~~----- 445 (562)
+..+...|..++..|++++|+..|++++...|....... .... ....
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence 345677888888888999999989888887765432211 0000 0000
Q ss_pred -H--HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 446 -L--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 446 -~--~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
. ...+++++|.++.++|++++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+
T Consensus 212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 1 2467889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 008540 523 KTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 523 ~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+.+....++..++. ..|.+....
T Consensus 292 ~~~~~~~g~~~~A~-~~~~~al~~ 314 (368)
T 1fch_A 292 GISCINLGAHREAV-EHFLEALNM 314 (368)
T ss_dssp HHHHHHHTCHHHHH-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHHh
Confidence 99988887776554 355555543
No 174
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.3e-09 Score=92.19 Aligned_cols=101 Identities=32% Similarity=0.418 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..++..|+++.|+..|++++...+... .+++++|.++...+++++|+..+++++...|
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 100 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3466789999999999999999999998866432 2377899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.+..+++.+|.+|..+|++++|+..|++++.++|++
T Consensus 101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999874
No 175
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=2e-09 Score=103.86 Aligned_cols=141 Identities=23% Similarity=0.240 Sum_probs=114.7
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|+|++|+..|.+++.+........ ......++.++|.+|..+|++++|+.++.+++.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999864331110 123455689999999999999999999999999
Q ss_pred c--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (562)
Q Consensus 477 ~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (562)
+ +|....+++++|.+|..+|++++|+..|++++++ +|....+...++.+.....+..++. ..|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~ 192 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE-TLY 192 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence 8 5778899999999999999999999999999999 6666677888888877777665543 345
Q ss_pred Hhhcc
Q 008540 541 GNMFA 545 (562)
Q Consensus 541 ~~~f~ 545 (562)
.+...
T Consensus 193 ~~~l~ 197 (283)
T 3edt_B 193 KEILT 197 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.03 E-value=1.7e-09 Score=96.44 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=86.5
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
...++++|.+++++++|++|+..++++++++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 008540 528 KMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~f~ 545 (562)
.+.+..++. ..|.+.+.
T Consensus 91 ~~g~~~~A~-~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAK-EAYEKGIE 107 (164)
T ss_dssp HTTCHHHHH-HHHHHHHH
T ss_pred HccCHHHHH-HHHHHHHH
Confidence 877766554 35555443
No 177
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.5e-09 Score=107.64 Aligned_cols=133 Identities=17% Similarity=0.086 Sum_probs=115.6
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
+..+...|..++..| ++++|+..|++++...|.... ++.++|.++..++++++|+..++++++.
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------------AWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345778899999999 899999999999988775443 3889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008540 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~ 547 (562)
.|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....++..++. ..|.+.....
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~ 223 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE-KWFLDALEKI 223 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH-HHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998888777766554 3566665544
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.03 E-value=3.2e-09 Score=92.98 Aligned_cols=140 Identities=15% Similarity=0.100 Sum_probs=108.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|+|++|+..|.+++.+.+..... .....++.++|.++..++++++|+.++++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999998764321 2345678899999999999999999999999
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
.+.+.. ..+++++|.+|..+|++++|+..+++++.+.+.. ..+...++.+.....+..++. ..+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a 155 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH 155 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence 876543 6789999999999999999999999999874322 234555666665555554433 344444
Q ss_pred cc
Q 008540 544 FA 545 (562)
Q Consensus 544 f~ 545 (562)
..
T Consensus 156 ~~ 157 (164)
T 3ro3_A 156 LE 157 (164)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.01 E-value=1.5e-09 Score=95.44 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-------NVK-----ALYRRAQAYIQMADLDLAEFDIKKALEI---- 511 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~a~a~~~l~~~~~A~~~~~~al~l---- 511 (562)
...+.++|.+++++|+|++|+..|+++|+++|+ +.. +|+++|.|+..+|+|++|+.+|.+|+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445789999999999999999999999999999 554 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 512 ---DPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 512 ---~p~~~~~~----~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+|++..++ ...+.+...+.+.+++.. .|.+...
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHh
Confidence 99999888 888888888887776653 5555443
No 180
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.98 E-value=1.8e-09 Score=104.24 Aligned_cols=125 Identities=11% Similarity=-0.022 Sum_probs=105.2
Q ss_pred HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 008540 409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR 488 (562)
Q Consensus 409 ~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~ 488 (562)
+...++|++|+..|+++++..+... .....+++++|.++..+|+|++|+..++++++++|++..+++.+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 83 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 83 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3446889999999999998632111 12345688999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 489 a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
|.+|..+|++++|+..|+++++++|++..+...++.+....++..++. ..|.++..
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~ 139 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQ 139 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999998887777665543 45555554
No 181
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.97 E-value=3.2e-09 Score=104.64 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=87.1
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (562)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a 489 (562)
...|++++|+..|+++++..|.+. .+++++|.|+.++|+|++|+..++++++.+|+++.+++++|
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTL---------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345899999999999999877543 34889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 008540 490 QAYIQMADLDL-AEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 490 ~a~~~l~~~~~-A~~~~~~al~l~p~~~~~~~~ 521 (562)
.++..+|++++ |...++++++++|+++.+...
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999976 578999999999999877653
No 182
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.96 E-value=7.3e-09 Score=105.92 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=100.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|++..|+..|.+|+++.+..... ......+++++|.+|..+|+|++|+.++++++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456778888999999999999999999999887765431 12345668888888888888888888888888
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHH
Q 008540 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEI-----D-PDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~-p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
++.+.. ..+++++|.+|..+|++++|+.+|++|+++ + |....+...++.+...+++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 775433 358888888888888888888888888883 5 66666777777776665554443
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=3.5e-09 Score=86.22 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=63.6
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.+++++|.+|+++|+|++|+..++++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4588999999999999999999999999999999999999999999999999999999999997653
No 184
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=3e-09 Score=104.73 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=106.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh-
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD- 476 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~- 476 (562)
.+..+...|..++..++|++|+..|++|+.+....... .....+++|+|.+|..+|+|++|+.+++++++
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455678999998999999999999999965543332 12345689999999999999999999999994
Q ss_pred ------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 477 ------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 477 ------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
..+....+++++|.+|..+|+|++|+..+++|+++.+.. ..+...++.+...+++..++....|++.+
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 223446799999999999999999999999999986544 56777888887777643223334555443
No 185
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.94 E-value=4e-09 Score=110.72 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=99.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..++.+|+|++|+..|++|+++.+...... .......+|.|+|.+|..+|+|++|+.++++++++.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 45577899999999999999999999999876432110 001123458899999999999999999999998763
Q ss_pred --------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 479 --------SRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 479 --------p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+....++..+|.++..++ +|++|+++|++|++++|+++++...+..+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 355788889998887765 699999999999999999998888777665444
No 186
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=5.6e-09 Score=102.80 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=92.2
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|++|+..|++|++........ ......+++|+|.+|.++++|++|+.++++++++
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999987654322 2345667999999999999999999999999988
Q ss_pred CCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008540 478 DSRN------VKALYRRAQAYIQMA-DLDLAEFDIKKALEID 512 (562)
Q Consensus 478 ~p~~------~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~ 512 (562)
.+.. ..+|+++|.+|..+| .+++|+++|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6543 789999999999999 5799999999999763
No 187
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.94 E-value=4.9e-09 Score=84.68 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=65.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
.+++|.++++.++|++|+..++++++.+|++.. +++++|.+|..+|++++|+..|+++++++|++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 457899999999999999999999999999999 999999999999999999999999999999998766
No 188
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.94 E-value=7.8e-09 Score=88.59 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=86.3
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
...++++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...++.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 008540 528 KMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~f~ 545 (562)
.+.+..++. ..|++...
T Consensus 89 ~~~~~~~A~-~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAI-ANLQRAYS 105 (137)
T ss_dssp HTTCHHHHH-HHHHHHHH
T ss_pred HHhhHHHHH-HHHHHHHH
Confidence 877766554 35555443
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=1.4e-08 Score=107.14 Aligned_cols=143 Identities=16% Similarity=0.135 Sum_probs=112.0
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
.+.+..+....+.+..+..+|+|++|+..|++++.+........ +...+.+++|+|.+|..+|+|++|+.+|+
T Consensus 303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 375 (490)
T 3n71_A 303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR 375 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45566677788888888899999999999999999876533221 12356668999999999999999999999
Q ss_pred HHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHHHHHHH
Q 008540 473 KVLDL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKL---EYKTLKEKMKEYNKKE 536 (562)
Q Consensus 473 ~al~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~---~l~~l~~~~~~~~~~~ 536 (562)
++|++ -|++ ...++++|.+|..+|+|++|+..|++|+++ .|+++.+.. .+..++..++++++++
T Consensus 376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 2444 678999999999999999999999999974 688876555 4555566666666655
Q ss_pred HHHHHhh
Q 008540 537 AKFYGNM 543 (562)
Q Consensus 537 ~~~~~~~ 543 (562)
. +|+++
T Consensus 456 ~-~~~~~ 461 (490)
T 3n71_A 456 F-MYHKM 461 (490)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 4 45444
No 190
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.93 E-value=7.6e-09 Score=109.37 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh---ccCHHHHHHHHHHHHh
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---~~~~~~A~~~~~~al~ 476 (562)
..+...|..++..|++++|+..|++++...+....... ...+++++|.++.+ +|++++|+..+++++.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888888888776643100 01248899999999 9999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988877765543
No 191
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=2.1e-09 Score=116.27 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=87.8
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.|++++|+..|+++++..|.+. .+++++|.++.++|+|++|+..++++++++|++..+++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4789999999999999877543 3488999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 492 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|..+|++++|++.|+++++++|++..+...++.+.....+.+++. ..|.+....
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~ 120 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA-AAYTRAHQL 120 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 999999999999999999999999999999999988877776554 355555443
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.92 E-value=5.9e-10 Score=90.22 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=81.2
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
..++|..+++.|+|++|+..|+++++..|.+.. .+++++|.||.+++++++|+.+++++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 457899999999999999999999998775432 148899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
..++++ +.+.+|+..|+++..++|++.
T Consensus 69 ~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 69 PALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 998865 667889999999988888763
No 193
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.92 E-value=1.7e-08 Score=99.71 Aligned_cols=147 Identities=11% Similarity=0.041 Sum_probs=117.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHHH----HHHH----
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKKQ----AKAL---- 446 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~------------------------~~~~~----~~~~---- 446 (562)
...+...|..++..|++++|+..|++++...+....... ..... ....
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 345678899999999999999999999988765432210 01111 1111
Q ss_pred --HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008540 447 --KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524 (562)
Q Consensus 447 --~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~ 524 (562)
...++.++|.++.++|++++|+..++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 245688999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 008540 525 LKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 525 l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+....++..++. ..|.+....
T Consensus 249 ~~~~~g~~~~A~-~~~~~a~~~ 269 (327)
T 3cv0_A 249 SYSNMSQYDLAA-KQLVRAIYM 269 (327)
T ss_dssp HHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHHhccHHHHH-HHHHHHHHh
Confidence 887777665544 355555443
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.91 E-value=6.9e-09 Score=84.93 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=85.7
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKE 527 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~ 527 (562)
+++++|.++.++++|++|+..++++++.+|.+..+++.+|.+|..+|++++|+..|+++++++|+ +..+...++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999 9999999998887
Q ss_pred HH-HHHHHHHHHHHHhhcccc
Q 008540 528 KM-KEYNKKEAKFYGNMFAKM 547 (562)
Q Consensus 528 ~~-~~~~~~~~~~~~~~f~~~ 547 (562)
.+ .+.+++. +.+.+.....
T Consensus 88 ~~~~~~~~A~-~~~~~~~~~~ 107 (112)
T 2kck_A 88 YIEGKEVEAE-IAEARAKLEH 107 (112)
T ss_dssp TCSSCSHHHH-HHHHHHGGGC
T ss_pred HHhCCHHHHH-HHHHHHhhcc
Confidence 77 6665443 4565555443
No 195
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=5.2e-09 Score=103.85 Aligned_cols=118 Identities=14% Similarity=0.037 Sum_probs=60.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------------HH-H---HH---------HHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------------EE-K---KQ---------AKALK 447 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-----------------~~-~---~~---------~~~~~ 447 (562)
.+..+.+.|+.+.+.|+|++|+..|++|+.+.+....... ++ . .+ .....
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 3455666677777777777777777777766543211100 00 0 00 00112
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
..+++|+|.+|.++|+|++|+.++++++.+.|.+ ..+++.+|.+|+.+|++++|+..|++++ ++|+..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 3445555555555555555555555555544322 2345555555555555555555555555 555553
No 196
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=7.1e-09 Score=102.87 Aligned_cols=102 Identities=19% Similarity=0.093 Sum_probs=64.4
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------------ChHHHHHH------------HHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------------GDEEKKQA------------KALK 447 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------------~~~~~~~~------------~~~~ 447 (562)
+..+...|..+.. |+|++|+.+|++|+.+.+..... .++-.... ....
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 4556666666666 77777777777777666542110 00000000 1122
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-----ALYRRAQAYIQMADLDLAEF 503 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-----a~~~~a~a~~~l~~~~~A~~ 503 (562)
..++++++.|++.+|++++|+.++++++ ++|.+.. .+..++.++ ..++.+.+..
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 3478899999999999999999999999 9997643 345566655 4666554444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.90 E-value=5.4e-09 Score=82.60 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=75.7
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..++|++|+..|++++...|.+. .+++++|.++.+++++++|+..+++++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456778899999999999999999999999876543 24789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 008540 478 DSRNVKALYRRAQAYIQMA 496 (562)
Q Consensus 478 ~p~~~ka~~~~a~a~~~l~ 496 (562)
+|++..+++++|.++..+|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998765
No 198
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.90 E-value=5.7e-09 Score=92.84 Aligned_cols=95 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~------------------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+..+.++|..+++.|+|++|+..|++++.+ +|.+..+|+++|.||..+|+|++|+.+|++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445789999999999999999999999999 78888999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008540 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM 543 (562)
Q Consensus 510 ~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 543 (562)
.++|++..+...++.+...+.+..++.. .|.+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~a 123 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLL 123 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHH
Confidence 9999999999999988888777665543 44433
No 199
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=1.7e-08 Score=103.12 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=103.8
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|++..|+..|.+|+.+.+..... ......+++++|.+|..+|+|++|+.++++++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456677778888888888888888888888877654332 11345667888888888888888888888888
Q ss_pred hcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 476 DLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALE-----IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 476 ~~~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-----l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
++.+ ....+++++|.+|..+|++++|+..|++|+. .+|....+...++.+...+++.+++. ..+.+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 288 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF-QFIEEGL 288 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHHH
Confidence 7632 1246788888888888888888888888888 66766677777777777666665443 3555554
Q ss_pred ccc
Q 008540 545 AKM 547 (562)
Q Consensus 545 ~~~ 547 (562)
...
T Consensus 289 ~~~ 291 (378)
T 3q15_A 289 DHI 291 (378)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 200
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.89 E-value=1.3e-08 Score=104.00 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=96.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
....+..+...|..+...|+|++|+..|.+|+++.+..... .....+++|+|.+|..+|++++|+.+++++
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456788899999999999999999999999998765321 345567899999999999999999999999
Q ss_pred Hh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 475 LD-----LD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 475 l~-----~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
++ .+ |....+++++|.+|..+|++++|+..|++|+++.
T Consensus 251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99 56 8889999999999999999999999999999884
No 201
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.89 E-value=4.5e-09 Score=112.04 Aligned_cols=151 Identities=15% Similarity=0.045 Sum_probs=115.4
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc------------CCCChHHHHHHHH------HHHHHHhcHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD------------TSFGDEEKKQAKA------LKVACNLNNA 455 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~------------~~~~~~~~~~~~~------~~~~~~~nla 455 (562)
.....+..+...|..++..|++++|+..|++++...|.. .....+-...... ....+++++|
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 344567778888888999999999999999988876641 0001111111111 1245688999
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
.++..+++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...++.+....++..++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888887777766554
Q ss_pred HHHHHHhhcc
Q 008540 536 EAKFYGNMFA 545 (562)
Q Consensus 536 ~~~~~~~~f~ 545 (562)
. ..|.++..
T Consensus 398 ~-~~~~~a~~ 406 (537)
T 3fp2_A 398 I-KQYDIAKR 406 (537)
T ss_dssp H-HHHHHHHH
T ss_pred H-HHHHHHHH
Confidence 4 35555544
No 202
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=1.8e-08 Score=102.89 Aligned_cols=109 Identities=14% Similarity=-0.024 Sum_probs=97.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|+|++|+..|.+|+++.+..... .....+++|+|.+|..+|++++|+.++++++.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788899999999999999999999999987654321 24566799999999999999999999999999
Q ss_pred -----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 477 -----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 477 -----~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
.+|....+++++|.+|..+|++++|+..+++|+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999998543
No 203
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=6.4e-09 Score=90.25 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHH
Q 008540 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVLDLD-S-RNVKALYRR 488 (562)
Q Consensus 414 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~al~~~-p-~~~ka~~~~ 488 (562)
....+.+.|.+++...+. ...+.+++|.|+.+.+ +.++++..++.+++.+ | .+..++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~---------------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L 77 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC---------------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence 345666777777653321 1234789999999988 7779999999999998 7 679999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 489 a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
|.+|+++++|++|+.+++++|+++|+|..+..+...+..++.
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888887765553
No 204
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=1.7e-08 Score=99.21 Aligned_cols=134 Identities=14% Similarity=0.063 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH---h
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL---D 476 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al---~ 476 (562)
..+...|..+...|+|++|+..|++|+.......... ....+++++|.+|..+++|++|+.++++++ +
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3345567777777788888888888887655433221 134578999999999999999999999999 4
Q ss_pred cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008540 477 LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGN 542 (562)
Q Consensus 477 ~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~ 542 (562)
..|++ ..+++++|.+|..+|+|++|+..|++|+++.++. ..+...++.+...+++.+++-...|++
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45553 3799999999999999999999999999886431 456677777777666555442333443
No 205
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=1.7e-08 Score=97.18 Aligned_cols=109 Identities=18% Similarity=0.058 Sum_probs=93.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|++++|+..|.+|+.+........ ......++.++|.++..+|++++|+.++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567788999999999999999999999999864321110 02245568999999999999999999999999
Q ss_pred hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 476 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.+ +|....+++.+|.+|..+|++++|+..|++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7778899999999999999999999999999987
No 206
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.85 E-value=1.7e-08 Score=109.24 Aligned_cols=132 Identities=11% Similarity=-0.029 Sum_probs=110.5
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|++++|+..|++++++.|.+. .++++++.+|.+.|++++|+..++++++..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG---------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556678888888888888888888887655432 248899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
|++..+++.+|.+|...|++++|++.|+++++++|.+..+...+..+..+.++.+++. ..|.++...
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 504 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLL 504 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHh
Confidence 9999999999999999999999999999999999999988888888877777665544 466666554
No 207
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=98.85 E-value=5.4e-09 Score=108.10 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008540 167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244 (562)
Q Consensus 167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~ 244 (562)
..+..||.|++||.+.. +|+.|+++ .|+.|.+|.|+++|||+++|.||++|+++.|.||+..+||..+.
T Consensus 156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-------- 226 (432)
T 1w26_A 156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-------- 226 (432)
T ss_dssp SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence 35789999999999995 89999976 89999999999999999999999999999999999999996543
Q ss_pred CCCCCeEEEEEEeecccc
Q 008540 245 VPPNATLQIALELVSWKT 262 (562)
Q Consensus 245 ip~~~~l~~~v~l~~~~~ 262 (562)
++.+++|+|+|.++..
T Consensus 227 --ag~~~~F~V~v~~v~~ 242 (432)
T 1w26_A 227 --KGKAAKFAINLKKVEE 242 (432)
T ss_dssp --SSCEEEEEEECCEECC
T ss_pred --CCceEEEEEEEEEEec
Confidence 6789999999998754
No 208
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.85 E-value=2.4e-08 Score=98.20 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=90.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|++|+..|++|+.+....... ......+++|+|.+|.++|+|++|+.++++++.+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999876654432 1122367899999999999999999999999987
Q ss_pred CCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 008540 478 DSR------NVKALYRRAQAYIQMADLDLA-EFDIKKALEID 512 (562)
Q Consensus 478 ~p~------~~ka~~~~a~a~~~l~~~~~A-~~~~~~al~l~ 512 (562)
.+. ...+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 543 278999999999999999999 88899998764
No 209
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=2.7e-08 Score=82.03 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=85.2
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
..++++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..++++++++|++..+...++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHhhcc
Q 008540 529 MKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f~ 545 (562)
..+..+.. ..|.+...
T Consensus 85 ~~~~~~A~-~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAK-RTYEEGLK 100 (118)
T ss_dssp TTCHHHHH-HHHHHHHT
T ss_pred HhhHHHHH-HHHHHHHH
Confidence 77665544 35555543
No 210
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.84 E-value=2e-08 Score=84.96 Aligned_cols=95 Identities=20% Similarity=0.227 Sum_probs=84.0
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT 524 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~---~~~~~~l~~ 524 (562)
++++|.++++.|+|++|+..+++++..+|++. .+++.+|.+|..+|++++|+..|++++.++|++ ..+...++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 67899999999999999999999999999998 899999999999999999999999999999999 788888888
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 008540 525 LKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 525 l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
+...+.+..++. ..|.++...
T Consensus 85 ~~~~~g~~~~A~-~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQ-QTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHHcCCHHHHH-HHHHHHHHH
Confidence 887777665544 456665544
No 211
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.4e-08 Score=104.44 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=106.7
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|+|++|+..|+++++..+.+. .....+++++|.+|..+|+|++|+.++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677788999999999999999999999999865432 2344568899999999999999999999999
Q ss_pred hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 008540 476 DL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 476 ~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~~~~~ 531 (562)
++ +|....+++.+|.+|..+|++++|+..|++++.+ .|....+...++.+.....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 98 5777899999999999999999999999999998 44555677777777777666
No 212
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.83 E-value=2.7e-08 Score=97.51 Aligned_cols=140 Identities=22% Similarity=0.234 Sum_probs=111.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|++++|+..|.+++.+........ ......+++++|.+|..+|++++|+..++++++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999864331100 123455688999999999999999999999998
Q ss_pred cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 477 LD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540 (562)
Q Consensus 477 ~~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~~~~~~~~~~~~~ 540 (562)
+. |....+++.+|.+|..+|++++|+..|++++.+ +|....+...++.+.....+..++. ..|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~ 218 (311)
T 3nf1_A 140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE-TLY 218 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH-HHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH-HHH
Confidence 74 667889999999999999999999999999998 6666667777888777776665544 344
Q ss_pred Hhhc
Q 008540 541 GNMF 544 (562)
Q Consensus 541 ~~~f 544 (562)
.++.
T Consensus 219 ~~al 222 (311)
T 3nf1_A 219 KEIL 222 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 213
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.83 E-value=2.8e-08 Score=86.82 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=92.1
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|++|+..|++++.+.+..... .....+++++|.++..++++++|+..+++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999998764321 234566889999999999999999999999987
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 478 DS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 478 ~p------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
.+ ....+++.+|.+|..+|++++|+..+++++++...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 43 22678999999999999999999999999987554
No 214
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=2.6e-08 Score=84.31 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=85.9
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
...++++|.++.+.++|++|+..+++++..+|.+..+++.+|.+|..++++++|+..|+++++++|++..+...++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44588999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 008540 528 KMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~f~ 545 (562)
...+..++. ..|.+...
T Consensus 96 ~~~~~~~A~-~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAM-DVYQKALD 112 (133)
T ss_dssp HTTCHHHHH-HHHHHHHH
T ss_pred HHhhHHHHH-HHHHHHHH
Confidence 777666544 35555443
No 215
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=3.5e-08 Score=96.71 Aligned_cols=109 Identities=19% Similarity=0.118 Sum_probs=92.3
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|++++|+..|.+++.+........ ......+++++|.++..+|++++|+..+++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566788999999999999999999999999864321000 02245568899999999999999999999999
Q ss_pred hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 476 ~~--------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.+ +|....+++.+|.+|..+|++++|+..|++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7777899999999999999999999999999985
No 216
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=2.6e-08 Score=91.35 Aligned_cols=129 Identities=12% Similarity=0.103 Sum_probs=101.4
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|++|+..|.+++.+...... ......+++++|.++..+|++++|+.++++++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999998765432 1234567899999999999999999999999998
Q ss_pred ---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHHHHHHH
Q 008540 478 ---DS----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP--DNRD----VKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 478 ---~p----~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p--~~~~----~~~~l~~l~~~~~~~~~~ 535 (562)
.+ ....+++++|.+|..+|++++|+..+++++.+.+ .+.. +...++.+.....+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33 3367899999999999999999999999997643 2221 234555555555544433
No 217
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.80 E-value=7.5e-08 Score=104.12 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=114.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------------HHHHHHHH------HHHHHHhcHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------------EEKKQAKA------LKVACNLNNAACKL 459 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------------~~~~~~~~------~~~~~~~nla~~~~ 459 (562)
+..+...|..+++.|++++|+..|++++...+.+..... +-...... ....++++++.+|.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 455678899999999999999999999988776443210 00011111 12456778899999
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
+.|++++|+..++++++++|.+..+|+.+|.+|...|++++|++.|+++++++|++..+...+..+..+....+++. ..
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN-EY 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH-HH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999988888888888877777665544 46
Q ss_pred HHhhccc
Q 008540 540 YGNMFAK 546 (562)
Q Consensus 540 ~~~~f~~ 546 (562)
|.++...
T Consensus 464 ~~~~~~~ 470 (597)
T 2xpi_A 464 LQSSYAL 470 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6766554
No 218
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.79 E-value=4.3e-08 Score=99.99 Aligned_cols=129 Identities=16% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|+|++|+..|++++.+.+..... .....+++++|.+|..+|++++|+.++++++.
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 345678889999999999999999999999998765431 23455688999999999999999999999998
Q ss_pred cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHH
Q 008540 477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~ 534 (562)
+.+.. ..+++.+|.+|..+|++++|+..|++++.+.+.. ..+...++.+....++..+
T Consensus 256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 87655 7788999999999999999999999999885543 3455566666555554443
No 219
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.76 E-value=4.9e-08 Score=96.27 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=111.8
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+..+...|..++..|++++|+..|++++.+.+..... .....++.++|.++..+|++++|+..+++++.
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578889999999999999999999999988764321 23455689999999999999999999999998
Q ss_pred cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 477 ~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
+.+.. ..+++.+|.+|..+|++++|+..|++++.+.+.. ..+...++.+.....+..++. ..|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~ 330 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKHL 330 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence 87655 7899999999999999999999999999886543 235566777776666665443 4566555
Q ss_pred ccc
Q 008540 545 AKM 547 (562)
Q Consensus 545 ~~~ 547 (562)
...
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 443
No 220
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.76 E-value=2.7e-08 Score=98.17 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=100.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~- 477 (562)
+..+...|..++..|+|++|+..|++++...+.+. .....++.++|.++..+|++++|+..+++++.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999855422 234556889999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 008540 478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR------DVKLEYKTLKEKMKE 531 (562)
Q Consensus 478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~------~~~~~l~~l~~~~~~ 531 (562)
.+....+++.+|.+|..+|++++|+..|++++++.+... .+...++.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 456688999999999999999999999999999865432 255566666665555
No 221
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=8e-08 Score=83.02 Aligned_cols=96 Identities=21% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
..++++|.++++.++|++|+..++++++.+|++ ..+++++|.+|..++++++|+..|++++.++|++..+...++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 347789999999999999999999999999998 89999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 008540 526 KEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~f~ 545 (562)
...+.+..++. ..|.+...
T Consensus 109 ~~~~~~~~~A~-~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAV-LDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHH-HHHHHHHH
Confidence 88877766554 45555544
No 222
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.74 E-value=1.4e-07 Score=79.20 Aligned_cols=98 Identities=16% Similarity=0.243 Sum_probs=86.2
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
...+++++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..+++++.++|++..+...++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 008540 527 EKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 527 ~~~~~~~~~~~~~~~~~f~ 545 (562)
....+..+.. ..|.+...
T Consensus 91 ~~~~~~~~A~-~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAV-AYYKKALE 108 (131)
T ss_dssp HHTTCHHHHH-HHHHHHHH
T ss_pred HHhCCHHHHH-HHHHHHHh
Confidence 7777665544 35555444
No 223
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=9.4e-08 Score=84.34 Aligned_cols=99 Identities=18% Similarity=0.198 Sum_probs=86.5
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
....++++|.+++..++|++|+..+.+++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...++.+.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34558899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 008540 527 EKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 527 ~~~~~~~~~~~~~~~~~f~~ 546 (562)
..+.+..++. ..|.+....
T Consensus 92 ~~~~~~~~A~-~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAAL-RDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHH-HHHHHHHHH
T ss_pred HHhccHHHHH-HHHHHHHHh
Confidence 7777665543 355555443
No 224
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.73 E-value=6.7e-08 Score=95.76 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-CChH---------HHHHHHHHH----------HHHHhcHHHHHh-
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDE---------EKKQAKALK----------VACNLNNAACKL- 459 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~-~~~~---------~~~~~~~~~----------~~~~~nla~~~~- 459 (562)
.+...|..+.+.|++++|...|++|+++.|.+.. .... ..+...... ..+|...+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4556666666777777777777777775554321 1000 000000000 011222222222
Q ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI---DPD-NRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l---~p~-~~~~~~~l~~l~~~~~~~~~~ 535 (562)
.+|++++|+..++++++.+|+++.+|..+|..+..+|++++|+..|++|+.. +|+ +..++..+..+..........
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2566666666666666666666666666666666667777777777777664 443 455666555555555444333
Q ss_pred HHHHHHhhccccC
Q 008540 536 EAKFYGNMFAKMT 548 (562)
Q Consensus 536 ~~~~~~~~f~~~~ 548 (562)
...++++.+...
T Consensus 261 -~~~~~~a~~~~p 272 (308)
T 2ond_A 261 -LKVEKRRFTAFR 272 (308)
T ss_dssp -HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcc
Confidence 245555554443
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.72 E-value=1.6e-07 Score=97.36 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=97.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+....+.+...-+.|+|++|+..|++++.+....-... +...+..++|+|.+|..+|+|++|+.+|+++|
T Consensus 295 ~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 34455555666666667899999999999999876433221 12355668999999999999999999999999
Q ss_pred hc-----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008540 476 DL-----DS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTL 525 (562)
Q Consensus 476 ~~-----~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l 525 (562)
++ -| +-...|+++|.+|..+|+|++|+..|++|+++ .|+++.+......+
T Consensus 368 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 368 KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 75 23 44678999999999999999999999999975 78998877766544
No 226
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=1.1e-07 Score=91.99 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=45.3
Q ss_pred HHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 450 CNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 450 ~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
+++++|.+|.. .+++++|+.+++++++. +++.+++++|.+|.. .+++++|+.+|++|++++ +..+...
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 151 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence 35566666666 66666666666666655 356666666666666 666666666666666654 3445555
Q ss_pred HHHHHHH
Q 008540 522 YKTLKEK 528 (562)
Q Consensus 522 l~~l~~~ 528 (562)
++.+...
T Consensus 152 lg~~~~~ 158 (273)
T 1ouv_A 152 LGSLYDA 158 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555444
No 227
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.72 E-value=3.3e-08 Score=100.92 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=101.8
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc-
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL- 477 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~- 477 (562)
+..+...|..++..|+|++|+..|++++...+.+. .....+++++|.++..+|+|++|+.++++++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999865432 234566889999999999999999999999887
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHH
Q 008540 478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKE 531 (562)
Q Consensus 478 -----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~ 531 (562)
.|....+++.+|.+|..+|++++|+..|++++.+.|.. ..+...++.+.....+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 45568899999999999999999999999999987653 2366666766666666
No 228
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.71 E-value=4.3e-08 Score=100.66 Aligned_cols=137 Identities=13% Similarity=0.147 Sum_probs=106.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|++|+..|++++++.+..... .....+++++|.+|..+|++++|+.++++++.+
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999998764321 234456889999999999999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 478 ~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
.+.. ..+++.+|.+|..+|++++|+..|++++.+.+.. ..+...++.+...+.+..++. ..|++..
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 370 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL-KYAEQHL 370 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 7754 7899999999999999999999999999885442 235556666666555544332 3444433
No 229
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=1.7e-07 Score=86.10 Aligned_cols=98 Identities=13% Similarity=0.005 Sum_probs=85.1
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~----------------ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
....+.++|.++++.++|++|+..+++++.+.|.+. .+++++|.+|..+|+|++|+.+|+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344578999999999999999999999999999887 8999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 511 l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
++|++..+...++.+...+.+..++. ..|++...
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~ 150 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAK-ENLYKAAS 150 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHH-HHHHHHHH
Confidence 99999999999998887777766543 34554443
No 230
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.69 E-value=1.9e-07 Score=77.65 Aligned_cols=98 Identities=28% Similarity=0.370 Sum_probs=85.4
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
..+++++|.++...+++++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|++++.++|.+..+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 008540 528 KMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 528 ~~~~~~~~~~~~~~~~f~~ 546 (562)
...+..+.. ..|.++...
T Consensus 89 ~~~~~~~A~-~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAI-EYYQKALEL 106 (125)
T ss_dssp HTTCHHHHH-HHHHHHHHH
T ss_pred HhcCHHHHH-HHHHHHHHh
Confidence 766665443 455555543
No 231
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=9.4e-08 Score=93.51 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=84.5
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
..+.++|.++++.|+|++|+..+++++..+|++..+++++|.+|..+|++++|+.+|++|++++|++..+...++.+...
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHhhc
Q 008540 529 MKEYNKKEAKFYGNMF 544 (562)
Q Consensus 529 ~~~~~~~~~~~~~~~f 544 (562)
+++..++.. .|.+..
T Consensus 85 ~g~~~~A~~-~~~~al 99 (281)
T 2c2l_A 85 MESYDEAIA-NLQRAY 99 (281)
T ss_dssp TTCHHHHHH-HHHHHH
T ss_pred cCCHHHHHH-HHHHHH
Confidence 776665543 444443
No 232
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.67 E-value=1.1e-07 Score=94.21 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=55.3
Q ss_pred hhhHHHHHHHH-------HcCcH-------HHHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH
Q 008540 400 GKKKEQGNTLF-------KAGKY-------ARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464 (562)
Q Consensus 400 ~~~~~~G~~~~-------~~g~~-------~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~ 464 (562)
..+...|..+. +.|++ ++|+..|++|+. +.|.... +|.++|.++.++|++
T Consensus 51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---------------~~~~~~~~~~~~~~~ 115 (308)
T 2ond_A 51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---------------LYFAYADYEESRMKY 115 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHhcCCH
Confidence 34555555554 45775 999999999999 5664322 244444444455555
Q ss_pred HHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 465 KQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 465 ~~A~~~~~~al~~~p~~~k-a~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
++|+..|+++++++|.+.. +|+.+|.++..+|++++|+..|++|++++|.+
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 5555555555555444443 44444444444444444444444444444443
No 233
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.66 E-value=1.1e-07 Score=79.94 Aligned_cols=96 Identities=22% Similarity=0.247 Sum_probs=83.5
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-------RDVKLE 521 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-------~~~~~~ 521 (562)
..++++|.++...++|++|+..+.+++..+|.+..+++.+|.+|..+|++++|+..|++++.++|++ ..+...
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999999999999999998877 778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 522 YKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 522 l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
++.+....+...++. ..|.+...
T Consensus 85 la~~~~~~~~~~~A~-~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAI-HFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHhccHHHHH-HHHHHHHH
Confidence 888877776665543 45555544
No 234
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.66 E-value=3.5e-07 Score=94.89 Aligned_cols=126 Identities=8% Similarity=-0.026 Sum_probs=99.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
..+......-..+.++|+|++|+..|++++......-... +...+.++.|+|.+|..+|+|++|+.+|+++|.
T Consensus 285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3445555666678889999999999999998754322211 123566789999999999999999999999997
Q ss_pred c-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 008540 477 L-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 477 ~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~~~~ 529 (562)
+ -|++ ...++++|.+|..+|++++|+..|++|+++ .|+++.+...+..+..-.
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 5 2344 678999999999999999999999999975 789988777766554433
No 235
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.65 E-value=6.7e-08 Score=101.30 Aligned_cols=121 Identities=15% Similarity=0.060 Sum_probs=96.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cCHHHHHHHHHHHHh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKLCTKVLD 476 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~~~~~~al~ 476 (562)
+..+.+.|..++..|+|++|+..|++++.+.+........ ....++.++|.++++. ++|++|+.+++++++
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI-------ESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC-------CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch-------hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 3456789999999999999999999999998764322100 0123467787777665 479999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 477 LDSRNVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~---l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
++|+++.+++.+|.++.. .+++++|++.|++|++++|++..+...+....
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 999999999999988665 46778999999999999999988877776543
No 236
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.65 E-value=8.1e-09 Score=109.18 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=88.1
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|+|++|+..|++|+++.|... .+++|+|.+|.++|+|++|+..++++++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------------KGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 56788999999999999999999999999877543 348899999999999999999999999999
Q ss_pred CCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008540 479 SRNVKALYRRAQA--YIQMADLDLAEFDIK-----------KALEIDPDN 515 (562)
Q Consensus 479 p~~~ka~~~~a~a--~~~l~~~~~A~~~~~-----------~al~l~p~~ 515 (562)
|++..+++.++.+ +..++++++|++.++ +++.++|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999 899999999999999 888887764
No 237
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=2.1e-07 Score=100.27 Aligned_cols=116 Identities=13% Similarity=0.005 Sum_probs=105.5
Q ss_pred HhhhHHHHHHHHHcCc----------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHH
Q 008540 399 AGKKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ 466 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~----------~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~ 466 (562)
...+..+|..+.+.++ |++|+..|.++++..|..... |++++.+..+++ +|++
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a---------------W~hR~w~l~~l~~~~~~~ 127 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT---------------WHHRCWLLSRLPEPNWAR 127 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcccccHHH
Confidence 4567778888888777 999999999999998876544 899999999999 7899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 467 A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
|+..|++++++||.|..||+.|+.++..++ .+++|++++.++++++|+|..++.....+...+
T Consensus 128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 999999999999999999999999999999 999999999999999999999999988887664
No 238
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=2.9e-07 Score=89.02 Aligned_cols=109 Identities=15% Similarity=0.058 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC--
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-- 478 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-- 478 (562)
....+|..+++.++|..|+..|++++..-.. .+...+++++|.++..+|++++|+.+|++++.-.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 5567788888888888888888765543110 0223458899999999999999999999998654
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 479 SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 479 p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
|. ...+++++|.|+.++|+.++|+..|++++..+|+ ..+...|.
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 55 6679999999999999999999999999999999 77766654
No 239
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.61 E-value=3.4e-07 Score=74.95 Aligned_cols=79 Identities=25% Similarity=0.216 Sum_probs=69.9
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++.+|..++++++|..|+..+++|++.. +.....+..+|.||.++|+++.|+..+++|++++|++..+...++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 6689999999999999999999999863 356789999999999999999999999999999999998877777
Q ss_pred HHHHHH
Q 008540 524 TLKEKM 529 (562)
Q Consensus 524 ~l~~~~ 529 (562)
.+...+
T Consensus 88 ~~~~~~ 93 (104)
T 2v5f_A 88 YFEYIM 93 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 240
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=1.7e-07 Score=87.55 Aligned_cols=129 Identities=14% Similarity=0.011 Sum_probs=93.7
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc---------CCC----ChHHH-H----HHHHHHHHHHhcHHHHHhh
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---------TSF----GDEEK-K----QAKALKVACNLNNAACKLK 460 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~---------~~~----~~~~~-~----~~~~~~~~~~~nla~~~~k 460 (562)
+..+...|..++..+++++|+..|++|++..... ... ..++- . ....-...+++|+|.+|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 4566778888888888888888888887652110 000 01110 0 0111134567899999988
Q ss_pred ----ccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 461 ----LKDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 461 ----~~~~~~A~~~~~~al~~~p--~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.+++++|+.+++++++..+ .++.+++++|.+|.. .+++++|+.+|++|.++ |.+..+...|+.+...
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 8899999999999999887 458999999999999 88999999999999988 6666677777777644
No 241
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=98.59 E-value=2.6e-08 Score=101.50 Aligned_cols=84 Identities=11% Similarity=0.253 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
.+..||.|++||.+.. +|+.|+++ .++.|.+|.|+++|||+++|.||+.|+++.|.||....||..+
T Consensus 160 ~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~---------- 228 (392)
T 1t11_A 160 AAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN---------- 228 (392)
T ss_dssp CCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----------
T ss_pred CCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----------
Confidence 5789999999999995 89999976 7899999999999999999999999999999997334677432
Q ss_pred CCCCeEEEEEEeecccc
Q 008540 246 PPNATLQIALELVSWKT 262 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (562)
.+|.+++|+|+|.++..
T Consensus 229 laGk~~~F~V~v~~i~~ 245 (392)
T 1t11_A 229 LKGKAAKFAIKVNKVEA 245 (392)
T ss_dssp TSSCEEEECCCEEEEEE
T ss_pred CCCCeEEEEEEEEEEEc
Confidence 36789999999998754
No 242
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.59 E-value=5.5e-08 Score=81.33 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=71.0
Q ss_pred hccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKVLDL---DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536 (562)
Q Consensus 460 k~~~~~~A~~~~~~al~~---~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~ 536 (562)
.+|++++|+..+++++++ +|++..+++.+|.+|..+|+|++|+..|+++++++|++..+...++.+...+.+..++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999988888776654
Q ss_pred HHHHHhhcc
Q 008540 537 AKFYGNMFA 545 (562)
Q Consensus 537 ~~~~~~~f~ 545 (562)
. .+.+...
T Consensus 82 ~-~~~~al~ 89 (117)
T 3k9i_A 82 E-LLLKIIA 89 (117)
T ss_dssp H-HHHHHHH
T ss_pred H-HHHHHHH
Confidence 3 4444433
No 243
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.59 E-value=5.8e-07 Score=86.83 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=68.8
Q ss_pred HHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008540 449 ACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKL 520 (562)
Q Consensus 449 ~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~ 520 (562)
.+++++|.+|.. .+++++|+.+++++++.+ +..+++++|.+|.. .+++++|+.+|+++++++ +..+..
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~ 186 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF 186 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence 457788888888 888888888888888875 67888888888888 888888888888888774 556777
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHhhc
Q 008540 521 EYKTLKEK----MKEYNKKEAKFYGNMF 544 (562)
Q Consensus 521 ~l~~l~~~----~~~~~~~~~~~~~~~f 544 (562)
.++.+... .....++. ..|++..
T Consensus 187 ~lg~~~~~g~~~~~~~~~A~-~~~~~a~ 213 (273)
T 1ouv_A 187 NAGNMYHHGEGATKNFKEAL-ARYSKAC 213 (273)
T ss_dssp HHHHHHHHTCSSCCCHHHHH-HHHHHHH
T ss_pred HHHHHHHcCCCCCccHHHHH-HHHHHHH
Confidence 77777666 55544433 3555543
No 244
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.58 E-value=1.6e-07 Score=82.35 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=66.9
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~----------~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
.++++|++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++.+++..++.+...
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999999876 599999999999999999999999999877
Q ss_pred HH
Q 008540 529 MK 530 (562)
Q Consensus 529 ~~ 530 (562)
+.
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 245
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5.9e-07 Score=82.08 Aligned_cols=110 Identities=15% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+...|..++..|++++|+..|.+++.+....... ......+++++|.++..+|++++|+.++++++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456778899999999999999999999999997654422 12345668999999999999999999999999
Q ss_pred hcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 476 DLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 476 ~~~p--~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
.+.+ .+ ..++..+|.+|..+|++++|+..|++++++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7632 22 44678999999999999999999999998743
No 246
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.56 E-value=2.2e-07 Score=94.77 Aligned_cols=95 Identities=23% Similarity=0.181 Sum_probs=84.1
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLD----------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~----------------~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p 513 (562)
.+.++|.+++++++|++|+..|+++++ ++|.+..+|+++|.||+.+++|++|+.+|++|++++|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 377899999999999999999999998 7888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 514 DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 514 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
++..+...++.+...+.+.+++. ..|++...
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~-~~l~~Al~ 335 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQAL-ADLKKAQE 335 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHH-HHHHHHHH
Confidence 99999999999888887776554 35555443
No 247
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.55 E-value=3.3e-07 Score=98.68 Aligned_cols=137 Identities=10% Similarity=-0.003 Sum_probs=110.6
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC--------
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------- 463 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------- 463 (562)
..|++.-...........+.++| ++|+..|.+++.+.|..... |++++.+..++++
T Consensus 22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~ta---------------W~~R~~~l~~l~~~~~~~~~~ 86 (567)
T 1dce_A 22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESA 86 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHhcccccchhhhh
Confidence 44555545555555556666665 57899999999999876544 8999999999998
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 464 --YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539 (562)
Q Consensus 464 --~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~ 539 (562)
+++|+..++++++.+|++..||+.|+-++..++ ++++|++++.++++++|.|..++...+.+...+....+++-..
T Consensus 87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 999999999999999999999999999999999 7799999999999999999999988887777665222344444
Q ss_pred HHhhc
Q 008540 540 YGNMF 544 (562)
Q Consensus 540 ~~~~f 544 (562)
+.++.
T Consensus 167 ~~~~I 171 (567)
T 1dce_A 167 TDSLI 171 (567)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 44443
No 248
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.55 E-value=2.1e-07 Score=86.85 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=83.3
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc----CHHHHHHHHHHHHhcCCCC
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK----DYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~----~~~~A~~~~~~al~~~p~~ 481 (562)
...++..|..-.....|.+|+.++..... .-...+++++|.+|.. + ++++|+.+++++++ +.+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~ 84 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA----------QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGS 84 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCC
Confidence 34455555544445566677766554221 1134568899999998 7 89999999999965 578
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008540 482 VKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEK 528 (562)
Q Consensus 482 ~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~~ 528 (562)
+.+++++|.+|.. .+++++|+.+|++|.++.|. +..+...|+.+...
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 9999999999998 89999999999999999883 46788888877655
No 249
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=2e-07 Score=84.00 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=90.5
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--------------hHHHHHHHH------HHHHHHhcH
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--------------DEEKKQAKA------LKVACNLNN 454 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--------------~~~~~~~~~------~~~~~~~nl 454 (562)
....+..+...|..+++.|++++|+..|++++...| +.... .+....++. -...+++++
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 344566788899999999999999999999887655 21100 000111111 124678999
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|.++..+|++++|+..++++++.+|++ ..+++++|.+|..+|++++|+..|++++.
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999999999999999976 66999999999999999999999999875
No 250
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=8.7e-07 Score=72.47 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+.+.|..+|+.++|..|+..|++|++..+...... ..+..++.++|.|+.++|+++.|+..++++++++|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4567899999999999999999999999876543110 11445688999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 008540 480 RNVKALYRRA 489 (562)
Q Consensus 480 ~~~ka~~~~a 489 (562)
++..++.+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 9999988886
No 251
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=2.6e-07 Score=91.14 Aligned_cols=130 Identities=12% Similarity=-0.048 Sum_probs=109.1
Q ss_pred hhHHHHHHH----HHc---CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHH--HHHHHH
Q 008540 401 KKKEQGNTL----FKA---GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK--QAEKLC 471 (562)
Q Consensus 401 ~~~~~G~~~----~~~---g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~--~A~~~~ 471 (562)
.+..++..+ ... +++.+++..+.++++..|.+... +++++.+..+++.|+ +++..|
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a---------------W~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV---------------WSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcccChHHHHHHH
Confidence 455666666 444 78999999999999998876544 889999999999999 999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008540 472 TKVLDLDSRNVKALYRRAQAYIQMAD------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545 (562)
Q Consensus 472 ~~al~~~p~~~ka~~~~a~a~~~l~~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~ 545 (562)
+++++.+|.|..||+.|+.++..++. ++++++++++++.++|+|..++..++.+..+.......-...+.+++.
T Consensus 170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 99999999999999999999999998 999999999999999999999999888877666544434445554443
No 252
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=7.9e-07 Score=87.72 Aligned_cols=117 Identities=12% Similarity=-0.137 Sum_probs=101.9
Q ss_pred HhhhHHHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHH----hhc---cCHHHHHH
Q 008540 399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK 469 (562)
Q Consensus 399 a~~~~~~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~---~~~~~A~~ 469 (562)
...+..+|..+...+ .+++|+..+.+++...|..... +++++.+. .++ +++++++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a---------------W~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI---------------WNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH---------------HHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH---------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence 456778888888888 8999999999999988876654 77787777 666 78999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMADLD--LAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~~~--~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.|+++|+.+|.|..+|+.|+.++..++.++ ++++.+.++++++|.|-.++.....+...+.
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 9999999999999999988887776655543
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.50 E-value=7.5e-07 Score=74.38 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=84.2
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH---HHHHHHHHHhcC-C-CCHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ---AEKLCTKVLDLD-S-RNVKALY 486 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~---A~~~~~~al~~~-p-~~~ka~~ 486 (562)
......+.+.|.+++...+. ...+.+|+|.|+.+.++... +|..+..++..+ | .+..++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~---------------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY 78 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCC---------------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34455667777777653221 12346799999999887777 999999999987 5 6789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.+|.+|+++|+|++|+.+++.+|+++|+|..+..+...+..++.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888887766654
No 254
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.49 E-value=1.6e-06 Score=87.83 Aligned_cols=126 Identities=13% Similarity=0.029 Sum_probs=88.3
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
.+..+...|..++..|+|+.|...|.+++.+.+..... .....+++++|.++..+|+|++|+..+++++.+
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44567788888999999999999999999887754321 123445677888888888888888888888775
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHH
Q 008540 478 D--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----RDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 478 ~--------p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~-----~~~~~~l~~l~~~~~~~ 532 (562)
. |....++..+|.+|..+|++++|+..+++++.+.+.. ..+...+..+.....+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence 4 3345667778888888888888888888888776642 22344444444444433
No 255
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.46 E-value=8.7e-07 Score=70.82 Aligned_cols=68 Identities=19% Similarity=0.040 Sum_probs=61.3
Q ss_pred HHhcHHHHHhhccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008540 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~ 517 (562)
++..+|.+++..++ ..+|...++++|.+||+++++++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 36678888876555 799999999999999999999999999999999999999999999999998543
No 256
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=1.6e-06 Score=86.62 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=102.4
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRAQ 490 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~~a~ 490 (562)
....++|+..+.++|.+.|..... +++++.+...++ .+++++..++++|..+|.|..+|+.|+.
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~yta---------------Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTV---------------WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHH---------------HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 445578999999999999876543 889999999999 5999999999999999999999999999
Q ss_pred HHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Q 008540 491 AYIQM-A-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-------KKEAKFYGNMFA 545 (562)
Q Consensus 491 a~~~l-~-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~f~ 545 (562)
++..+ + +++++++.+.++++++|.|-.++...+.+...+.... ..+-..+.++..
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 99999 8 9999999999999999999999988888877776654 345556665554
No 257
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=3.8e-06 Score=83.47 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~~~a~a~ 492 (562)
+.+++..+..++...|.+... +++++.+..+++ .|++++..|+++++.+|.|..||+.|+.++
T Consensus 90 l~~EL~~~~~~L~~~PKny~a---------------W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGT---------------WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 789999999999988876544 889999999998 499999999999999999999999999999
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 493 IQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 493 ~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
..++. ++++++++.++++.+|.|..++.....+...+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999 69999999999999999999998888876666
No 258
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=5.8e-07 Score=72.81 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=66.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
+..+...|..+++.|+|++|+..|++++++.|..... ++++|.||.++|++++|+..+++++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGT---------------YYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999998876543 8999999999999999999999999987
Q ss_pred CC--CHHHHHHHHHHHHH
Q 008540 479 SR--NVKALYRRAQAYIQ 494 (562)
Q Consensus 479 p~--~~ka~~~~a~a~~~ 494 (562)
|. +..+...+...+..
T Consensus 72 ~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHH
Confidence 64 34444444444433
No 259
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.39 E-value=1.5e-06 Score=86.25 Aligned_cols=129 Identities=9% Similarity=-0.023 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHcCcHH-HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC----------HHHHHH
Q 008540 401 KKKEQGNTLFKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEK 469 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~-~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~----------~~~A~~ 469 (562)
.+.+.-....++|+|. +|+..+.+++.+.|..... ++.++.+...++. +++++.
T Consensus 31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta---------------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~ 95 (331)
T 3dss_A 31 SATQAVFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESAALVKAELG 95 (331)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHhcccccchhhhHHHHHHHH
Confidence 3334444444677776 7999999999998875543 7777777777665 799999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 470 LCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 470 ~~~~al~~~p~~~ka~~~~a~a~~~l~~--~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
.++.+|..+|.|..+|+.|+.++..++. ++++++.+.++++++|.|-.++..-+.+...+....+.+-..+.++.
T Consensus 96 ~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 96 FLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999994 99999999999999999999888877776655442233344444443
No 260
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.36 E-value=2.1e-06 Score=74.09 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=79.3
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCC
Q 008540 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 405 ~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~ 480 (562)
.|..++..+.+.+|+..|++|.+.-. ..+++|+|.+|.. .+++++|+.+++++.+. .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 77777777888889999999987521 2347899999998 88999999999999886 6
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 481 ~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
++.+++++|.+|.. .+++++|+.+|++|.++. +..+...|.
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 88999999999999 899999999999998873 444544443
No 261
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=8.1e-07 Score=85.91 Aligned_cols=128 Identities=11% Similarity=-0.024 Sum_probs=100.0
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCC
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~ 481 (562)
....+..+...|+|++|...|..++...|. .. +++++|.++++.++|++|+..+++++...+..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~ 168 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF 168 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence 345677888999999999999877754332 12 47899999999999999999999988863221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008540 482 --VKALYRRAQAYIQMADLDLAEFDIKKALEID--PD-NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546 (562)
Q Consensus 482 --~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~--p~-~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~ 546 (562)
..+++.+|.++..+|++++|+.+|++++.-. |. ..++...++.+..++.+.+++ ...|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA-~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA-VALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Confidence 4589999999999999999999999998644 55 556778888887777766544 3466666553
No 262
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.32 E-value=8.3e-07 Score=86.99 Aligned_cols=113 Identities=12% Similarity=-0.050 Sum_probs=88.8
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHH------HHHHHHhcHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKA------LKVACNLNNAACK 458 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-------------~~~~~~~~~~------~~~~~~~nla~~~ 458 (562)
.+..+...|..+.+.|++++|+..|++++...|..... ..+....++. -...+++++|.++
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567888889999999999999988887665421100 0001111111 1245689999999
Q ss_pred hhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
..+|++++|+..+.++++.+|++ ..++.+++.+|..+|+.++|...|++++.
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999998 89999999999999999999999999985
No 263
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.31 E-value=3.4e-06 Score=69.78 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 466 ~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
.|+..++++++.+|++..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.....+..++. ..|.+..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR-QAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999998887777665543 3444443
No 264
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=2.3e-06 Score=85.45 Aligned_cols=116 Identities=9% Similarity=-0.126 Sum_probs=102.5
Q ss_pred HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-c-CHHHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-K-DYKQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g-~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~-~~~~A~~~~~~al 475 (562)
...+..++..+...+ .+++|+..+.+++...|.+... ++.++.+..++ + ++++++..|+++|
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a---------------W~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV---------------WHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 345778888888888 5999999999999988876544 88999999888 7 8999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQAYIQMADLD--------LAEFDIKKALEIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a~~~l~~~~--------~A~~~~~~al~l~p~~~~~~~~l~~l~~~~ 529 (562)
+.+|.|..||+.|+-++..++.++ ++++.+.++++++|.|-.++.....+...+
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999888 999999999999999998888877765443
No 265
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.25 E-value=3.3e-06 Score=90.19 Aligned_cols=117 Identities=12% Similarity=0.043 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
..+...|..+.+.|++++|...|++++.+.|.+.. .+|++++.++.++|++++|+..++++++..|
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34566778888889999999999999987553210 1355556666666666666666666666655
Q ss_pred CCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008540 480 RNVKALYRRAQA-YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530 (562)
Q Consensus 480 ~~~ka~~~~a~a-~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~ 530 (562)
.+...+...+.. +..+|++++|+..|+++++++|++..++..+..+....+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 555555544433 234566666666666666666666655555555544333
No 266
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.18 E-value=7.5e-06 Score=86.47 Aligned_cols=78 Identities=21% Similarity=0.084 Sum_probs=68.2
Q ss_pred HHHHhcHHHHHhh----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CH
Q 008540 448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD---NR 516 (562)
Q Consensus 448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~---~~ 516 (562)
..+++++|.+|.. .+++++|+.+++++++. .++.+++++|.+|.. .+++++|+.+|++|++++|+ +.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 440 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE 440 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence 3468899999999 89999999999999986 478999999999999 89999999999999999954 77
Q ss_pred HHHHHHHHHHH
Q 008540 517 DVKLEYKTLKE 527 (562)
Q Consensus 517 ~~~~~l~~l~~ 527 (562)
.+...++.+..
T Consensus 441 ~a~~~l~~~~~ 451 (490)
T 2xm6_A 441 NRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTTSCH
T ss_pred HHHHHHHhcCH
Confidence 77777766644
No 267
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.17 E-value=5.8e-06 Score=87.07 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=92.1
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+.+.|..|..+|+|++|+.+|++++.+........ +......++|+|.+|..+|+|++|+..+++||
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999876533221 12355668999999999999999999999999
Q ss_pred hc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 476 ~~-----~p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
++ -|++ .+.+-.++.++..++.|++|...|+++.+-.-+|
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 74 3555 5666789999999999999999999987544333
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.16 E-value=1.2e-05 Score=67.13 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=71.1
Q ss_pred HHhcHHHHHhhccC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+.+|+|.|..+.++ ..++|..+...++.+|. ...++|.+|.+|+++|+|++|+.+++.+|+++|+|..+..+...+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 46688888888764 45799999999998884 588999999999999999999999999999999999998888877
Q ss_pred HHHHHH
Q 008540 526 KEKMKE 531 (562)
Q Consensus 526 ~~~~~~ 531 (562)
..++.+
T Consensus 122 e~ki~k 127 (134)
T 3o48_A 122 EDKIQK 127 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777664
No 269
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.15 E-value=1.7e-05 Score=80.23 Aligned_cols=138 Identities=9% Similarity=-0.044 Sum_probs=103.6
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+..+|..++..|+++.|+..+.+++...+... ......+++++|.++...|++++|+..+.+++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34456677889999999999999999999998765321 11344568899999999999999999999999
Q ss_pred hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDP--------DNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 476 ~~~p~~------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p--------~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
.+.+.. ..+++++|.+|..+|++++|+..|++++.+.+ ....+...+..+.....+..+.. ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~ 159 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE-ASAR 159 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH-HHHH
Confidence 876533 34578999999999999999999999998752 22344555666655555554443 2444
Q ss_pred hhc
Q 008540 542 NMF 544 (562)
Q Consensus 542 ~~f 544 (562)
+..
T Consensus 160 ~al 162 (373)
T 1hz4_A 160 SGI 162 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 270
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.14 E-value=5.7e-06 Score=88.34 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=90.3
Q ss_pred HhhhHHHHHHHHH-------cCcHH-------HHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccC
Q 008540 399 AGKKKEQGNTLFK-------AGKYA-------RASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463 (562)
Q Consensus 399 a~~~~~~G~~~~~-------~g~~~-------~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~ 463 (562)
...+...|..+.+ .|+++ .|+..|++|+. +.|... .+++++|..+.++|+
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~---------------~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------------LLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH---------------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHhcCC
Confidence 3456677777775 68877 89999999997 666432 348899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~-ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
+++|+..|+++++..|.++ .+|...+.++..+|++++|++.|++|++..|.+..+.
T Consensus 337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 9999999999999999985 6999999999999999999999999999988765443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.12 E-value=2.8e-05 Score=65.86 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=69.5
Q ss_pred HHhcHHHHHhhccC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
+.+|+|.|..+..+ -.+++..++..+..+| ....++|.+|.+|+++|+|++|+.+++.+|+.+|+|..+..+...+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 36688888888775 4579999999999888 4678999999999999999999999999999999999988887777
Q ss_pred HHHHH
Q 008540 526 KEKMK 530 (562)
Q Consensus 526 ~~~~~ 530 (562)
..++.
T Consensus 121 e~~i~ 125 (144)
T 1y8m_A 121 EDKIQ 125 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 272
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=98.11 E-value=2.3e-06 Score=88.39 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred CCCCCCEEEEEEEEEEcCCCEEeecCCCCCcEEEEcCCCccchhHHHHHcccccccEEEEEecCCCccCCCCCCCCCCCC
Q 008540 52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN 131 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~~g~~~~~t~~~~~p~~~~~g~~~~~~g~~~~l~gm~~Ge~~~v~ip~~~~yg~~~~~~~ip~~ 131 (562)
.++.||.|+|+|+++ .||..|+++.. .++.|.+|.+. + |+++|.||++|++++|.+.. +|
T Consensus 154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG 213 (433)
T 3gty_X 154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG 213 (433)
T ss_dssp CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence 578899999999998 49999998754 68889999887 4 99999999999999999854 35
Q ss_pred CcEEEEEEEeEeeeccccccCcceeEee
Q 008540 132 ATLQFDVELLSWTSVKDICKDGGIIKKI 159 (562)
Q Consensus 132 ~~l~~~vel~~~~~~~~~~~d~~~~k~i 159 (562)
.+..|.|.|.++.....+..|..+++.+
T Consensus 214 k~a~F~VtV~~Ik~~~lPEldDEfak~~ 241 (433)
T 3gty_X 214 KKYTYKLEVEEVYKRTLPEIGDELAKSV 241 (433)
T ss_dssp EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence 8999999999999877777777777754
No 273
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.07 E-value=2.2e-05 Score=89.93 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (562)
.+...|..++..|+|+.|+.+|.+|-. |..+|.|+.++|+|++|++.+++|...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~n-----------------------y~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVSN-----------------------FGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhH-----------------------HHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 456799999999999999999998631 78899999999999999999999955433
Q ss_pred ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008540 480 ------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534 (562)
Q Consensus 480 ------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~ 534 (562)
.++..+..++..|..+|.|++|+..|++++.+++.+.....+|..+..+.+..+-
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence 1444566788889999999999999999999999999999999888776654443
No 274
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.07 E-value=2.6e-05 Score=67.14 Aligned_cols=94 Identities=16% Similarity=0.019 Sum_probs=81.3
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 412 ~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
.+++.+|+..|++|.+... ... . +|.+|.....+++|+.+++++.+. .++.+++++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~a---------------~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MFG---------------C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TTH---------------H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hhh---------------h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3578999999999997642 111 3 999999999999999999999987 789999999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008540 492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 492 ~~~----l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~ 528 (562)
|.. .+++++|+.+|++|.+. .+..+...|..+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999 89999999999999987 678888888888765
No 275
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.03 E-value=1.3e-05 Score=82.08 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC-
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS- 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p- 479 (562)
.+...|+.++..|+|+.|...|.++ +. |.++|.|+.++|+|++|++.+.++. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR 178 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence 4555555555555555555555544 11 4455555555555555555555551 11
Q ss_pred --------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008540 480 --------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 480 --------------------------~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~ 533 (562)
.++.-+..+..+|.++|++++|+..|++++.+++.+..+..+|+.+..+.+..+
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k 258 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 258 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence 122223455678999999999999999999999999999999998877766544
No 276
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.93 E-value=8.9e-05 Score=78.15 Aligned_cols=92 Identities=18% Similarity=0.062 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh----ccCHHHHHHHH
Q 008540 400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLC 471 (562)
Q Consensus 400 ~~~~~~G~~~~~----~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~ 471 (562)
..+...|..++. .+++++|+..|++|++... ..+++++|.+|.. .+++++|+.++
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 138 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-----------------PQAQQNLGVMYHEGNGVKVDKAESVKWF 138 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 345556666666 6666666666666665311 1123444444444 44455555555
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008540 472 TKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALE 510 (562)
Q Consensus 472 ~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~ 510 (562)
+++++. +++.+++++|.+|.. .+++++|+.+|+++++
T Consensus 139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 544432 344444445544444 4444445444444444
No 277
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.91 E-value=4.4e-05 Score=79.79 Aligned_cols=120 Identities=18% Similarity=0.022 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHHH------HHHHHHhcHHHH
Q 008540 401 KKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAKA------LKVACNLNNAAC 457 (562)
Q Consensus 401 ~~~~~G~~~~~~g---~~~~A~~~y~~al~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~nla~~ 457 (562)
.+...|..+.+.| ++.+|+..|++|++..+..... ..+..+.... -...+++|+|.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4677888999999 9999999999998765433210 0000000111 112234555555
Q ss_pred -H--hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 458 -K--LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----DLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 458 -~--~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-----~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+ ...+++++|+.+++++++. .++.+++++|.+|. .| ++++|+.+|++|. +.+..+...|+.+.
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIY 328 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 2 3455555555555555543 35555555555555 33 5556666665555 55555555555443
No 278
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.90 E-value=0.00024 Score=70.89 Aligned_cols=114 Identities=12% Similarity=-0.015 Sum_probs=83.6
Q ss_pred hHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcCCC-----------------ChHHHHHHHHHH------------HH
Q 008540 402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSF-----------------GDEEKKQAKALK------------VA 449 (562)
Q Consensus 402 ~~~~G~~~~~~---g~~~~A~~~y~~al~~~~~~~~~-----------------~~~~~~~~~~~~------------~~ 449 (562)
+.-+|..++.+ ..+.+|+.+|++|+++.|..... .......+.... ..
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 33445555544 45789999999999998864211 111111111111 12
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
+|.-+|..++..|++++|+..+++++.++| +.-+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 333466677788999999999999999996 477889999999999999999999999999999875
No 279
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.88 E-value=0.00012 Score=63.85 Aligned_cols=118 Identities=13% Similarity=0.096 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD- 478 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~- 478 (562)
.+++....++..+.|+.|+-.+..++.+...+... +. ..+..++.++|.+++..++|..|...|++||...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999987665542 22 3455568899999999999999999999997643
Q ss_pred --CCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008540 479 --SRN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526 (562)
Q Consensus 479 --p~~----------------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~ 526 (562)
+.+ ....|++|.||.+++++++|+..++..- ..-..+.+...|+++.
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 111 2577999999999999999999987531 1224556666666553
No 280
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=6.1e-05 Score=77.53 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=87.3
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------------ChHHH-HHHH-----------
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------------GDEEK-KQAK----------- 444 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~------------------~~~~~-~~~~----------- 444 (562)
.......+.+.|..|++.|+|++|+..|.+++.+.+..... ..+.. ....
T Consensus 51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 33445668899999999999999999999999876542210 01110 0000
Q ss_pred -HHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008540 445 -ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514 (562)
Q Consensus 445 -~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~ 514 (562)
..+..++.++|.+|..+|+|.+|+..+++++.. .+....++...+.+|..+++|++|+..+++++.+.+.
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 023456778889999999999999988888764 2334678888899999999999999999999888543
No 281
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.0001 Score=63.79 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHcC---cHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAG---KYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 400 ~~~~~~G~~~~~~g---~~~~A~~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
+...+.|..+.+.+ ++++|+..++..++.. |. .+..+++|+|..|+++++|.+|+++|+++|
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55677888888877 7889999999988865 31 234568999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHH
Q 008540 476 DLDSRNVKALYRRAQA 491 (562)
Q Consensus 476 ~~~p~~~ka~~~~a~a 491 (562)
+++|+|..|..-+-.+
T Consensus 99 ~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 99 QTEPQNNQAKELERLI 114 (152)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHH
Confidence 9999999887765443
No 282
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.83 E-value=3e-05 Score=74.27 Aligned_cols=88 Identities=15% Similarity=-0.001 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc-----cCHHHHHHHHHHHHhcCCCC-HHHHHHH
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----KDYKQAEKLCTKVLDLDSRN-VKALYRR 488 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~~~~~A~~~~~~al~~~p~~-~ka~~~~ 488 (562)
...|...+++|+++.|.. ..-.+|..+|..|.+. |+.++|.++++++|+++|+. ..+++..
T Consensus 179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 567777788888877752 1334588899999996 99999999999999999975 9999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008540 489 AQAYIQM-ADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 489 a~a~~~l-~~~~~A~~~~~~al~l~p~~ 515 (562)
|..|+.. +++++|...|++|+..+|..
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999884 99999999999999988773
No 283
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.76 E-value=0.00011 Score=76.65 Aligned_cols=75 Identities=20% Similarity=0.076 Sum_probs=64.1
Q ss_pred HHHHhcHHHHHhhcc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 008540 448 VACNLNNAACKLKLK-----DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDV 518 (562)
Q Consensus 448 ~~~~~nla~~~~k~~-----~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~----l~~~~~A~~~~~~al~l~p~~~~~ 518 (562)
..+++|+|.+|. .| ++++|+.+++++. +.++.+++++|.+|.. ..++++|+.+|++|.+. .+..+
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 356 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA 356 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence 345889999998 55 9999999999999 8999999999999988 45999999999999875 45567
Q ss_pred HHHHHHHHHH
Q 008540 519 KLEYKTLKEK 528 (562)
Q Consensus 519 ~~~l~~l~~~ 528 (562)
...|+.+...
T Consensus 357 ~~~Lg~~y~~ 366 (452)
T 3e4b_A 357 DFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 284
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=7.3e-05 Score=76.94 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~ 480 (562)
.+...|..++..|+|.+|+..+.+++......... .....++++++.+|..+++|.+|...+++++...+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 34567888888888888888888888777654432 456678999999999999999999999999987654
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 481 NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 481 ~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
........+..+..+|.+..+...|..|..
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 208 IYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 434455667777777777666667776654
No 285
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.73 E-value=0.00014 Score=83.57 Aligned_cols=107 Identities=12% Similarity=-0.043 Sum_probs=82.3
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--hHHHHHHHH-----HHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKA-----LKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~--~~~~~~~~~-----~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.|..+...|.|++|+..|+++-.........- -..+++..+ ....+|+++|.++.+.|+|++|+..|.++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 348999999999999999999753322100000 011111111 23567999999999999999999999886
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 477 ~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+++.+|++.|.++.++|+|++|+++|.+|.+.+++.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence 788999999999999999999999999999988553
No 286
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.60 E-value=0.00013 Score=71.44 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=79.4
Q ss_pred HHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc----
Q 008540 404 EQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---- 477 (562)
Q Consensus 404 ~~G~~~~~~g--~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---- 477 (562)
..+...+..| +++.|...|+++....|.. ....+++| |++++|+|++|...++.+++.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~-------------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTW-------------KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-------------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-------------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3444455555 8999999999987655420 01112344 899999999999999988876
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008540 478 ------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521 (562)
Q Consensus 478 ------~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~ 521 (562)
+|+|+.++.++..+...+|+ +|.+.+.++.+++|+++-+...
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 58999999999999999998 8999999999999999865443
No 287
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.39 E-value=0.0005 Score=67.25 Aligned_cols=122 Identities=7% Similarity=-0.033 Sum_probs=86.8
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC-
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR- 480 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~- 480 (562)
+.-.|..++..|++++|++.+.+++...+.. . ...++.-++.+++++|+.+.|.+.+++..+.+|+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~-----------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE--G-----------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--T-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--C-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 3578888999999999999999987654410 0 2334667888999999999999999999888883
Q ss_pred ---CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008540 481 ---NVKALYRRAQA--YIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA 537 (562)
Q Consensus 481 ---~~ka~~~~a~a--~~~l~--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~ 537 (562)
+-..+..++.+ .+..| ++.+|...|+.+....|+......++. +...+++..++++
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 23445555544 66556 899999999998887776333344444 6666666665554
No 288
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.30 E-value=0.00037 Score=55.28 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=58.3
Q ss_pred HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
+..+...|..++..++ ..+|...+++|+.+.|.+... ++.+|..+++.|+|++|+.++++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA---------------~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAA---------------LSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456678888876555 799999999999999976543 7789999999999999999999999
Q ss_pred hcCCCC
Q 008540 476 DLDSRN 481 (562)
Q Consensus 476 ~~~p~~ 481 (562)
+.+|..
T Consensus 71 ~~~p~~ 76 (93)
T 3bee_A 71 DSNDPN 76 (93)
T ss_dssp TCCCTT
T ss_pred hhCCCC
Confidence 999974
No 289
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.29 E-value=0.0033 Score=63.96 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=101.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~ 470 (562)
....+...|......++...|...+.+|+.+..-.. .+...+...+.+.+..+...++.+++.+|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345566677777788999999999999999864321 1223455677888888889999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHH
Q 008540 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE-------IDPDNRDVKLEYKTL 525 (562)
Q Consensus 471 ~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~-------l~p~~~~~~~~l~~l 525 (562)
+..++..+|-+..+|..+-.||...|+..+|++.|+++.. ++|. ++.+..+..+
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~-~~l~~l~~~i 254 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERI 254 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999988754 3565 3444444443
No 290
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.00089 Score=69.18 Aligned_cols=93 Identities=9% Similarity=-0.039 Sum_probs=72.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+.+.|..|..+|+|++|+.+|++++.+........ +......++|+|.+|..+|+|++|+..+++|+
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999876533221 12355668999999999999999999999999
Q ss_pred hc-----CCCC---HHHHHHHHHHHHHc
Q 008540 476 DL-----DSRN---VKALYRRAQAYIQM 495 (562)
Q Consensus 476 ~~-----~p~~---~ka~~~~a~a~~~l 495 (562)
++ -|++ ...+.+++.|+..+
T Consensus 399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 399 DIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 75 3555 34555666666544
No 291
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.23 E-value=0.00071 Score=64.81 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 008540 463 DYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQM-----ADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKE 527 (562)
Q Consensus 463 ~~~~A~~~~~~al~~~p~--~~ka~~~~a~a~~~l-----~~~~~A~~~~~~al~l~p~~-~~~~~~l~~l~~ 527 (562)
....|....++|+++||+ +..+|..+|..|..+ |+.++|++.|++|++++|+. ..+.-.++...-
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 578899999999999999 677999999999996 99999999999999999975 777777776543
No 292
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0013 Score=67.95 Aligned_cols=80 Identities=11% Similarity=-0.013 Sum_probs=64.9
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+..+.+.|..|..+|+|++|+.+|++++.+........ +......++|+|.+|..+|+|++|+..+++||
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34567788999999999999999999999999876533221 12345568999999999999999999999999
Q ss_pred hc-----CCCCH
Q 008540 476 DL-----DSRNV 482 (562)
Q Consensus 476 ~~-----~p~~~ 482 (562)
++ -|+++
T Consensus 410 ~i~~~~lG~~Hp 421 (433)
T 3qww_A 410 AIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHTCTTCH
T ss_pred HHHHHHcCCCCh
Confidence 85 35654
No 293
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.89 E-value=0.0056 Score=50.89 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=38.9
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA 491 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a 491 (562)
+-.+++.+|..++|+|+|..|+.+|+.+|+.+|+|.+|.--+..+
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445688999999999999999999999999999998887655443
No 294
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.80 E-value=0.012 Score=49.17 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC
Q 008540 403 KEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 403 ~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p 479 (562)
.+.+..+.+..+ ..+++..++..++..+ ..+-.+++.+|..++|+|+|..|+.+|+.+|+.+|
T Consensus 44 F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--------------~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 44 FNYAWGLIKSTDVNDERLGVKILTDIYKEAE--------------SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--------------GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--------------chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 344555555443 4566666666555322 12445688999999999999999999999999999
Q ss_pred CCHHHHHHHHHH
Q 008540 480 RNVKALYRRAQA 491 (562)
Q Consensus 480 ~~~ka~~~~a~a 491 (562)
+|.+|.--+..+
T Consensus 110 ~N~QA~~Lk~~I 121 (134)
T 3o48_A 110 NNKQVGALKSMV 121 (134)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998887655444
No 295
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.79 E-value=0.017 Score=48.76 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=53.8
Q ss_pred hHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 402 KKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 402 ~~~~G~~~~~~g~---~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
..+.+..+.+..+ ..+++..++..++..+ . .+-.|++.+|..++|+++|..|..+|+.+|+.+
T Consensus 42 ~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~-----------~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 42 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---S-----------RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---S-----------THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---c-----------chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444555665543 4566666666655322 1 144568899999999999999999999999999
Q ss_pred CCCHHHHHHHHH
Q 008540 479 SRNVKALYRRAQ 490 (562)
Q Consensus 479 p~~~ka~~~~a~ 490 (562)
|+|.+|.--+..
T Consensus 108 P~n~QA~~Lk~~ 119 (144)
T 1y8m_A 108 RNNKQVGALKSM 119 (144)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999887665443
No 296
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.74 E-value=0.0038 Score=63.90 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=99.3
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHH------HHHHHHhcHHHHHhh
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKA------LKVACNLNNAACKLK 460 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~------~~~~~~~~~~~~------~~~~~~~nla~~~~k 460 (562)
..-...+..+...|.++++.|+|+.|++.|.+|........ ... ++..... ....-...+..+|.+
T Consensus 142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~--ef~lA~~~~l~L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC--cHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence 34456677889999999999999999999999942210000 000 0000000 000012235678999
Q ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHH
Q 008540 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM--ADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYN 533 (562)
Q Consensus 461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l--~~~~~A~~~~~~al~l~p-----~~~~~~~~l~~l~~~~~~~~ 533 (562)
.|+|++|+..++++|.+++.+..++..+|.+|.+- ++..++++.|...+.+.| ++...+.++.-+.-...+.+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999999999999999999999999888774 577788888877777777 66667777777776666665
Q ss_pred HH
Q 008540 534 KK 535 (562)
Q Consensus 534 ~~ 535 (562)
.+
T Consensus 300 ~A 301 (449)
T 1b89_A 300 NA 301 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 297
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.51 E-value=0.054 Score=59.11 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al 475 (562)
...+....+.|+++.|...|++++..++.. .+.+++....+..-...+|...+.+..+.+..+.|...+.+|+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555667889999999999999875311 1111122222222333456666777777788888888888888
Q ss_pred hc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 008540 476 DL-DSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMT 548 (562)
Q Consensus 476 ~~-~p~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~ 548 (562)
+. .+...+.|...|..-...++ ++.|+..|+++++..|++...+..+..+....++. .+.+.+|.+......
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~ 535 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKIS 535 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSS
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcC
Confidence 76 44456666666666666544 78888888888888888877776666554444332 344556666655543
No 298
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=96.31 E-value=0.0067 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCCCCCeEEEEEEEEeCCCeEeecc--cceEEEecCCCCcchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008540 168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV 245 (562)
Q Consensus 168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~v~vp~~~~~g~~~~~~~~~~~~i 245 (562)
.+..||.|+++|.+.. +|..|+++ .++.+.+|.+. + |+++|.||+.|+...|.+ .|
T Consensus 154 ~a~~gD~V~id~~~~~-dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v----tF-------------- 211 (433)
T 3gty_X 154 PAEAGDLVRVNMEVYN-EEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER----EY-------------- 211 (433)
T ss_dssp CCCTTSEEEEEEEEEC-TTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE----EE--------------
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE----ee--------------
Confidence 4668999999999884 88888865 56667778776 4 999999999999999998 33
Q ss_pred CCCCeEEEEEEeecccc
Q 008540 246 PPNATLQIALELVSWKT 262 (562)
Q Consensus 246 p~~~~l~~~v~l~~~~~ 262 (562)
+|.+..|.|.+..+..
T Consensus 212 -aGk~a~F~VtV~~Ik~ 227 (433)
T 3gty_X 212 -EGKKYTYKLEVEEVYK 227 (433)
T ss_dssp -TTEEEEEEEEEEEEEE
T ss_pred -CCCeEEEEEEEEEEEE
Confidence 3457889999988754
No 299
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.30 E-value=0.016 Score=50.38 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=61.9
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-------H-HHH-H-HHHHHHHHHhcHHHHHhhccCHHHH
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-------E-EKK-Q-AKALKVACNLNNAACKLKLKDYKQA 467 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~-------~-~~~-~-~~~~~~~~~~nla~~~~k~~~~~~A 467 (562)
.++.+...|+.+|.+++|.+|...|++||........... + ... . ....-..+.+.+|.||.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 3566788999999999999999999999987653211100 0 000 0 0000123467799999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHH
Q 008540 468 EKLCTKVLDLDSRNVKALYRRAQAY 492 (562)
Q Consensus 468 ~~~~~~al~~~p~~~ka~~~~a~a~ 492 (562)
+...+.+-. ...+++.-.-+|+.|
T Consensus 142 i~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 998765422 234567777777655
No 300
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.22 E-value=0.018 Score=62.95 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p 479 (562)
.+...++...+.++.+.|...|.+|++..+... . .+|...|....+.+ +++.|...|+++|+..|
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~-------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-P-------------DIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-T-------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-h-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 345555555667889999999999998733221 1 12445555555654 59999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~ 549 (562)
+++..+...+.....+|+.+.|+..|++|+...|+ ...++..+........... ..+++++++.....+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFPE 573 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCC
Confidence 99998888888888999999999999999999884 3455555555544444332 234566666655543
No 301
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.88 E-value=0.054 Score=53.92 Aligned_cols=123 Identities=10% Similarity=-0.005 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHH----------HHHHHHhcHHHHHhhccCH-----------HHHHHHHHHH
Q 008540 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKA----------LKVACNLNNAACKLKLKDY-----------KQAEKLCTKV 474 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~----------~~~~~~~nla~~~~k~~~~-----------~~A~~~~~~a 474 (562)
-.|..+|-+|..++.... .+...+... -...++..++.||.-+..+ ..|+. ...+
T Consensus 194 ~~Aydl~Lra~~~l~~~~---~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~-a~~a 269 (372)
T 3ly7_A 194 GALLTNFYQAHDYLLHGD---DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID-NIVT 269 (372)
T ss_dssp GGGHHHHHHHHHHHHHCS---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH-HHHh
Confidence 467788888877665421 122122111 1234556667777532211 12222 1123
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008540 475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544 (562)
Q Consensus 475 l~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f 544 (562)
+..+|.++.+|..+|.++...|++++|+..+++|+.++|+ ......++.+.....+.+++.. .|.+.|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~Al 337 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAF 337 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 4667889999999999999999999999999999999975 5566777888777766665543 344433
No 302
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.067 Score=58.56 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=53.5
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
++.-.|..++..++|+.|+..+++|...-|.....|+++|.||..+++|+.|+-.++.+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455777788999999999999999999999999999999999999999999888776
No 303
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.67 E-value=0.17 Score=43.15 Aligned_cols=94 Identities=12% Similarity=0.019 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 008540 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l 495 (562)
++-+..|++|+...|..... ...-.+.++.+.|.. ...++.++|.+.|+.++.++....+.|.-.|+--...
T Consensus 36 ~rlrd~YerAia~~Pp~k~~-------~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq 107 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYG-------QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ 107 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGT-------TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccccc-------cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 77789999999988865311 112233445556644 5679999999999999998888888888889888999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH
Q 008540 496 ADLDLAEFDIKKALEIDPDNRD 517 (562)
Q Consensus 496 ~~~~~A~~~~~~al~l~p~~~~ 517 (562)
|++..|++.+.+|+.+.|...+
T Consensus 108 gnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 108 GNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp TCHHHHHHHHHHHHHTTCBCHH
T ss_pred ccHHHHHHHHHHHhccCCCcHH
Confidence 9999999999999999998754
No 304
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=95.22 E-value=0.13 Score=49.70 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=79.9
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCH----HHHHHHHHHH
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----KQAEKLCTKV 474 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----~~A~~~~~~a 474 (562)
.....+.|-.++..|+|.+|+..|+.+|..++-....+.++.++++++...|...+-.+-+.+.+- +...+.++-+
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 333566899999999999999999999999987766667777788777776665554444333221 1112222222
Q ss_pred -----HhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008540 475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 475 -----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~p~~~ 516 (562)
.++.|.+.---.|.| ...++.++|-.|....++.|++.|..+
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 233444433333443 456788999999999999999999754
No 305
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.73 E-value=0.28 Score=49.40 Aligned_cols=98 Identities=15% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-----
Q 008540 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD----- 478 (562)
Q Consensus 404 ~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~----- 478 (562)
..|..|+..|+|.+|+..+.+.++.+..... ......++......|..++++.++...+.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 7889999999999999999999998875332 25567778889999999999999999999986542
Q ss_pred CCCHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 008540 479 SRNVKA--LYRRAQAYI-QMADLDLAEFDIKKALE 510 (562)
Q Consensus 479 p~~~ka--~~~~a~a~~-~l~~~~~A~~~~~~al~ 510 (562)
|....+ ..--|..|+ ..++|..|-.+|-.+++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222333 345688999 89999999999998874
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.64 E-value=1.9 Score=41.59 Aligned_cols=114 Identities=16% Similarity=0.285 Sum_probs=80.4
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhc--cC-----HHHHHHHHHHH
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KD-----YKQAEKLCTKV 474 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~-----~~~A~~~~~~a 474 (562)
..+.|-.++..|+|.+|+..|+.+|..++-....+.++..+++++...|...+-.+-+.+ +. .+...+.++-+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 467899999999999999999999999988776677788888888777665554443333 22 12333333333
Q ss_pred -----HhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 475 -----l~~~p~~~ka~~~~a-~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
.++.|.|.---.|.| ...++.++|-.|....++.|++.|..
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~ 231 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP 231 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence 233454433333444 45677899999999999999998863
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.63 E-value=0.39 Score=41.61 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh--c---
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--L--- 477 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--~--- 477 (562)
.-.+..+|-.|+|.+|+-... .... ....+..++||.++++|..|+...+..|+ .
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-------~lNT-------------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d 96 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-------KLNT-------------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERD 96 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-------TCCB-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCC
T ss_pred hhhhhhhhhcchHhHHHHHHH-------hcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 345667777787776665442 2111 12255789999999999999999999993 2
Q ss_pred ------------CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 478 ------------DSRNVKALY-RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 478 ------------~p~~~ka~~-~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
||.+...++ -+|..+.++|+-++|+.++.+....+|-.+.+.
T Consensus 97 ~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vE 151 (242)
T 3kae_A 97 PDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVE 151 (242)
T ss_dssp CCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHH
Confidence 233433333 569999999999999999999999888765544
No 308
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.52 E-value=0.55 Score=49.07 Aligned_cols=121 Identities=14% Similarity=0.020 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh---------HHHHHHH----------------HHHHHHHhcH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQAK----------------ALKVACNLNN 454 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~---------~~~~~~~----------------~~~~~~~~nl 454 (562)
..+...+..+.+.|+.+.|...|.+|+.. |.+...+- +....+. .....+|...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 34556677777889999999999999999 75432110 0000000 1122456666
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~-~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
+....+.+..+.|...+.+| ...+.....|...|..-..++ +.+.|+..|+++++..|+++..+..+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y 360 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 77777788999999999999 433334566666666666566 69999999999999989887654443
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.51 E-value=0.27 Score=46.31 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=62.9
Q ss_pred HHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008540 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525 (562)
Q Consensus 456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l 525 (562)
...++.+..++|+..+...++.+|.|.+....+-+.++-.|+|+.|...++.+.+++|+.......++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999987666555544
No 310
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.18 Score=51.78 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC--
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-- 478 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-- 478 (562)
.+...|..+++.|++..|++.|.++......... ++.++++...+++..++|..|..+++++..+-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~ 200 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK 200 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999998887654321 45567788889999999999999999986542
Q ss_pred -CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 479 -SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 479 -p~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
++. .+.....|.+++..++|..|-..|..++.-
T Consensus 201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 221 234456688888999999999999887654
No 311
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.88 E-value=0.48 Score=49.36 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=72.0
Q ss_pred HHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008540 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE 527 (562)
Q Consensus 448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~ 527 (562)
..++.++|........+..|..+|.+|+.+.|++-..|..+|..+...++.-+|.-+|-+++......+.++..|..+-.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 44677888888888899999999999999999999999999999999999999999999999887778888888876654
Q ss_pred H
Q 008540 528 K 528 (562)
Q Consensus 528 ~ 528 (562)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 312
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.84 E-value=0.47 Score=49.58 Aligned_cols=128 Identities=8% Similarity=-0.065 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhcc-CHHHHHHHHHHHHhcCC
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p 479 (562)
.+...+....+.+..+.|...|.+| + .+. .+. .+|...|......+ +.+.|...++.+++..|
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~-----------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGP-----------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCH-----------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CCh-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 3455555555677899999999999 3 221 111 12444555555555 69999999999999989
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMTE 549 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~f~~~~~ 549 (562)
+++..+...+.....+|+.+.|+..|+++ +....++..+.......... ..-++++.++...+.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM-ELFRELVDQKMDAIKA 416 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhcc
Confidence 98887777788788899999999999998 34566666666666555543 3344567777766653
No 313
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.24 E-value=1.5 Score=43.99 Aligned_cols=132 Identities=13% Similarity=0.037 Sum_probs=89.0
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh-------------------hhcCCCChHH---------HH---HHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI-------------------EYDTSFGDEE---------KK---QAKALKV 448 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~-------------------~~~~~~~~~~---------~~---~~~~~~~ 448 (562)
....+.|..|.+.|++++-.........++ ...+...+.. |. ....++.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999877766664443332 2222111111 11 1122344
Q ss_pred HHHhcHHHHHhhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q 008540 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEID---PDNRDVK 519 (562)
Q Consensus 449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~---p~~~~~~ 519 (562)
.+-..+|..|+..|+|.+|+..+.++++.... -...+....+.|..++++.+|.+.|.+|.... +.++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 45568999999999999999999998774221 25677788999999999999999999998653 3556666
Q ss_pred HHHHHHHHHHHH
Q 008540 520 LEYKTLKEKMKE 531 (562)
Q Consensus 520 ~~l~~l~~~~~~ 531 (562)
..+..+.-.+..
T Consensus 180 a~i~~~~Gi~~l 191 (394)
T 3txn_A 180 GALDLQSGILHA 191 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhHHHH
Confidence 666655544444
No 314
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=90.42 E-value=0.57 Score=35.68 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=35.1
Q ss_pred ChHH-HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 391 NTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 391 ~~~e-~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+..+ .++.|..+..+|..+=+.|+|.+|+.+|.+|++++-.
T Consensus 2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4445 6678889999999999999999999999999997653
No 315
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.27 E-value=4.9 Score=41.14 Aligned_cols=105 Identities=14% Similarity=0.063 Sum_probs=76.6
Q ss_pred HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh-
Q 008540 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD- 476 (562)
Q Consensus 398 ~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~- 476 (562)
.+.-....+..++..|+|.+|.........-.-. ... +..++.+++.....|+..++|.+|...++++..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~--~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYG--SME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--SSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh--ccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444567889999999999999998876643221 111 234555677788889999999999999999742
Q ss_pred --cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 477 --LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 477 --~~p~~----~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
-.+.+ .+.+...|..|...++|.+|-.+|..++..
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22222 344556789999999999999999888753
No 316
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=89.09 E-value=1.1 Score=36.55 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=37.4
Q ss_pred ccCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 388 ~~~~~~-e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.+|+.. +.++.|..+..+|...=+.++|.+|+.+|..|++++-.
T Consensus 6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~ 50 (117)
T 2cpt_A 6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 50 (117)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 345555 67788889999999999999999999999999998654
No 317
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.00 E-value=1.7 Score=40.88 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=51.1
Q ss_pred HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 406 G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
...+++.+..+.|+......++..|.+... ...+...+.-.|+|+.|...++.+.+++|....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~---------------R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 356889999999999999999988866532 334555666789999999999999999998744
No 318
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.81 E-value=0.43 Score=52.24 Aligned_cols=60 Identities=20% Similarity=0.166 Sum_probs=52.7
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
.-+..++..+..+|+|+.|+..-++|+...|.+... |..||.||.++++|+.|+-..+-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~t---------------W~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFES---------------WYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH---------------HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHH---------------HHHHHHHHHHhccHHHHHHHHhcC
Confidence 356778888999999999999999999999876543 889999999999999999887776
No 319
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=87.14 E-value=3.1 Score=43.35 Aligned_cols=102 Identities=5% Similarity=-0.037 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-C
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-S 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p 479 (562)
.+...-..+.+.|+++.|.+.|++..+.-- .+ ....|+.+-.+|.+.|++++|...+++..+.. .
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~P-------------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~ 172 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QP-------------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV 172 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-------------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 345566778899999999999988765311 01 12236777788899999999999999987753 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Q 008540 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR 516 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~p~~~ 516 (562)
-+...|..+-.+|.+.|++++|.+.|++..+. .|+..
T Consensus 173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 35678888999999999999999999987654 56543
No 320
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.61 E-value=2.6 Score=37.09 Aligned_cols=82 Identities=7% Similarity=-0.077 Sum_probs=49.3
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
...++..|...+++|+++-|.++|.++-++ ..+...|.-.|+-+.-....+.+....
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-----------------------~~L~~Ly~~tg~~e~L~kla~iA~~~g 90 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSF-----------------------DKLSFLYLVTGDVNKLSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH-----------------------HHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCH-----------------------HHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence 346788888888888888888888765432 234444445555554444444443322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
. +.....+++.+|+++++++.|.+.
T Consensus 91 ~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 91 D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 1 223345677778888877777543
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.87 E-value=2.5 Score=43.92 Aligned_cols=81 Identities=10% Similarity=-0.057 Sum_probs=70.2
Q ss_pred HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC
Q 008540 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478 (562)
Q Consensus 399 a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~ 478 (562)
...+...|...-.+..+..|...|.+|+.+.|..... |+-+|.+....+++-+|+-+|-++|...
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~---------------~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP---------------YNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch---------------HHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 3467788999888999999999999999999987755 8889999999999999999999999887
Q ss_pred CCCHHHHHHHHHHHHH
Q 008540 479 SRNVKALYRRAQAYIQ 494 (562)
Q Consensus 479 p~~~ka~~~~a~a~~~ 494 (562)
...+.|.-++...+.+
T Consensus 217 ~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 217 FPFPAASTNLQKALSK 232 (497)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHH
Confidence 7778888877777665
No 322
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.48 E-value=4.9 Score=32.33 Aligned_cols=74 Identities=11% Similarity=0.085 Sum_probs=58.3
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHH
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~ 466 (562)
.....|-.+.++|-..=..|+-+.|+.+|++++..+..- +....+.|+..+.+..+...||..+..+++....
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888888899999999999999987642 1244678999999999999999998887775554
Q ss_pred H
Q 008540 467 A 467 (562)
Q Consensus 467 A 467 (562)
.
T Consensus 97 ~ 97 (116)
T 2dl1_A 97 G 97 (116)
T ss_dssp H
T ss_pred c
Confidence 3
No 323
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=85.17 E-value=1.7 Score=33.03 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=35.7
Q ss_pred cCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 389 DMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 389 ~~~~~-e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.|++. ..++.|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus 8 ~~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 8 HMSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34443 45688889999999999999999999999999997653
No 324
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=83.97 E-value=2.5 Score=32.19 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=34.6
Q ss_pred CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 390 ~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
|+..+.++.|..+..+|...=+.|+|++|+.+|..|++++-.
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 343345677888899999999999999999999999997654
No 325
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=83.66 E-value=4.3 Score=31.49 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.++.|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~ 47 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999999999999998764
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.97 E-value=1.7 Score=45.09 Aligned_cols=69 Identities=14% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~~---~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
...+++-+-..|+..+.|++|....+++.--.. .| ...+|..|+++...++|.+|.++|..|+...|.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344566677889999999999999999953322 11 6778889999999999999999999999988765
No 327
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=82.63 E-value=7.5 Score=40.41 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=59.4
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRDVKLEYK 523 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~l~ 523 (562)
.|+.+-.+|.+.|++++|+..+++..+.. .-+...|..+-.+|.+.|++++|.+.|+...+. .|+.......+.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 47788889999999999999999987653 236788888999999999999999999988764 566554444443
No 328
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.25 E-value=3.9 Score=41.04 Aligned_cols=78 Identities=13% Similarity=-0.028 Sum_probs=58.7
Q ss_pred HHHHHhhccCHHHHHHHHHHHHhcCCC----------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 454 NAACKLKLKDYKQAEKLCTKVLDLDSR----------N------------VKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 454 la~~~~k~~~~~~A~~~~~~al~~~p~----------~------------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
.|......++...|...+.+||.+... . ..++..++.+++.+|++.+|+..+.+++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444567888999999999886421 1 235557889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 008540 512 DPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 512 ~p~~~~~~~~l~~l~~~~~~ 531 (562)
+|-+..+...+-.+..+..+
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr 220 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDR 220 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 99998877777665444433
No 329
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=81.81 E-value=3.6 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=17.6
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
|.++|..+++.++++.|+.+|.++
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 667777777777777777777765
No 330
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=81.37 E-value=5.8 Score=30.21 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=30.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
..|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999999998654
No 331
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.07 E-value=3.8 Score=47.48 Aligned_cols=106 Identities=10% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh--HHHHHHH------HHHHHHHhcHHHHHhhccCHHHHHHHHHHH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAK------ALKVACNLNNAACKLKLKDYKQAEKLCTKV 474 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~--~~~~~~~------~~~~~~~~nla~~~~k~~~~~~A~~~~~~a 474 (562)
.-+|..++..|++++|..+|.+|-.-+........ .....+. ......|+..+..+-+.+.++.+++.+..|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55788999999999999999988644322221111 1111110 012234566777888899999999999999
Q ss_pred HhcCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008540 475 LDLDSRN-V----KALYRRAQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 475 l~~~p~~-~----ka~~~~a~a~~~l~~~~~A~~~~~~a 508 (562)
|+..+.+ . ..|.++=++++.+++|++|-..+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9865433 2 25778899999999999997777543
No 332
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=78.56 E-value=3.9 Score=41.83 Aligned_cols=103 Identities=6% Similarity=0.006 Sum_probs=69.3
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC--------C--CC
Q 008540 413 GKYARASKRYEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--------S--RN 481 (562)
Q Consensus 413 g~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--------p--~~ 481 (562)
...+.|.+...++...+-.+.....++. -.-+.....+.+++-.+|+++++...|....+.+-... | ..
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3467788888888887665543211110 01222333345677789999999888777665432221 2 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDN 515 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l-~p~~ 515 (562)
+..+|.+|+.++..++|.+|.++|..|+.. -|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 678899999999999999999999999998 7754
No 333
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.77 E-value=2.9 Score=42.61 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=60.8
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRDVKLEYKT 524 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p---~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l--~p~~~~~~~~l~~ 524 (562)
++..+|..|++.|+++.|++.+.++..... .-...++...++++..++|..|...+++|..+ ...++..+..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456799999999999999999999987643 33788999999999999999999999999765 3344555544444
Q ss_pred H
Q 008540 525 L 525 (562)
Q Consensus 525 l 525 (562)
+
T Consensus 213 ~ 213 (429)
T 4b4t_R 213 Y 213 (429)
T ss_dssp H
T ss_pred H
Confidence 4
No 334
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.50 E-value=5.2 Score=35.12 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=39.4
Q ss_pred hhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+..|+++.|.+.++.. ++...|-++|.+.+..|+++-|+.+|.++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4689999999988765 567889999999999999999999998763
No 335
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.45 E-value=9 Score=32.02 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=45.8
Q ss_pred HhcHHHHHhh-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 451 NLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 451 ~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|.++|+-++- +|.-++--..+...+.-++-++..++.+|.||.++|+..+|.+.+++|-+-
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5677765554 445555555555556666778999999999999999999999999999864
No 336
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.24 E-value=4.7 Score=30.78 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=32.4
Q ss_pred HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
++.|..+-.++..+.+.|+|++||.++.+|..++...
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA 48 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568888889999999999999999999999887653
No 337
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.82 E-value=20 Score=36.55 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHh----cCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLD----LDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE---IDPDNRD 517 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~p~~--~ka~~~~a~a~~~l~~~~~A~~~~~~al~---l~p~~~~ 517 (562)
+..+...+|..|...|+|.+|......+.. .++.. ...+....+.|+..++|..|...++++.. -.+.++.
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 455566789999999999999999988753 12221 55778889999999999999999999742 3556666
Q ss_pred HHHHHHHHHHHHHHHH
Q 008540 518 VKLEYKTLKEKMKEYN 533 (562)
Q Consensus 518 ~~~~l~~l~~~~~~~~ 533 (562)
.+..+..+..++...+
T Consensus 216 lk~~~~~~~~~~~~~e 231 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHK 231 (445)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666665555554433
No 338
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=75.23 E-value=7.3 Score=42.68 Aligned_cols=49 Identities=18% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHH-------------HHHHHHcCCHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR-------------AQAYIQMADLDLAEFDIKKA 508 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~-------------a~a~~~l~~~~~A~~~~~~a 508 (562)
..||.+.++|..+...+.. ..+.+.+-++ ..+|+++|++++|++.|.+.
T Consensus 701 ~~~y~~~~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 701 IEAFTNAHDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHccChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4577788888877666543 1222222222 23556667777777666543
No 339
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.04 E-value=54 Score=31.83 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred HHHHHHHhhhHHHHHHHHHcCcHHHHHHHH-HHHHHHhhhcCCCChHHHHHHHHHHHHHH------------hcHHHHHh
Q 008540 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRY-EKAVKYIEYDTSFGDEEKKQAKALKVACN------------LNNAACKL 459 (562)
Q Consensus 393 ~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y-~~al~~~~~~~~~~~~~~~~~~~~~~~~~------------~nla~~~~ 459 (562)
+|..+.-+.++-..+.|.++++|++|++.. .-|+.++...... .-..+-.+.+.+| .++..++.
T Consensus 29 ~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~---sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 29 EEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGG---SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345666777889999999999999999874 4444444321100 0000000111111 11222222
Q ss_pred hcc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008540 460 KLK--------DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505 (562)
Q Consensus 460 k~~--------~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~ 505 (562)
... -..+|+.+..+.=...-.++..+..+|..|.+-++|.+|+.+|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 211 1334455544422223356888889999999999999998887
No 340
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=70.55 E-value=6 Score=29.03 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=33.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.+++-..-....+.|..+..+|+++.|+.+|-+|+..++.
T Consensus 10 ~e~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 10 AEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3445555667789999999999999999999999998774
No 341
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=70.51 E-value=34 Score=38.71 Aligned_cols=104 Identities=6% Similarity=-0.118 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcC-C
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-S 479 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p 479 (562)
.+...-+.|.+.|+.++|...|....++....... -+..|+-+-..|.+.|++++|+..+++..+.. .
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-----------dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-----------TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-----------CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 46677788999999999999997765432211111 12347888889999999999999999987643 2
Q ss_pred CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCC
Q 008540 480 RNVKALYRRAQAYIQMAD-LDLAEFDIKKALEI--DPDN 515 (562)
Q Consensus 480 ~~~ka~~~~a~a~~~l~~-~~~A~~~~~~al~l--~p~~ 515 (562)
-|.-.|.-+-.++.+.|+ .++|.+.|+...+. .|+.
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 366778888889999998 57888999888764 4554
No 342
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=68.72 E-value=46 Score=28.85 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=44.2
Q ss_pred hcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+-++...+-.|+|..|+-... .-+...+.|..+.||.++.+|..|+..+++.+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778899998887552 33568899999999999999999999999999
No 343
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=68.31 E-value=36 Score=25.70 Aligned_cols=15 Identities=20% Similarity=-0.135 Sum_probs=6.4
Q ss_pred HHhhccCHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLC 471 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~ 471 (562)
-.-+.|+|++|+..|
T Consensus 25 e~D~~g~y~eAl~lY 39 (86)
T 4a5x_A 25 ELDSESRYPQALVCY 39 (86)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 333444444444443
No 344
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.98 E-value=9.6 Score=30.61 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHH
Q 008540 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD----NRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 462 ~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~----~~~~~~~l~~l~~~~~~~~~~ 535 (562)
..|.+|..+.+++|.+|.. +.-...+.-|.+.+..|.+++.+..+ ....+...+.++.++......
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~ 86 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQN 86 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 3478888888888888762 33344455566667777888877653 123455555555555544433
No 345
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.24 E-value=14 Score=28.50 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=35.3
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+.+++-..-......|..++.+|+++.|+.+|-+|+..++.
T Consensus 12 d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 12 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45566667778889999999999999999999999998774
No 346
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=66.60 E-value=22 Score=30.25 Aligned_cols=72 Identities=13% Similarity=0.116 Sum_probs=56.1
Q ss_pred HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008540 410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA 489 (562)
Q Consensus 410 ~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a 489 (562)
...++.++|...|+.|+.+ ...+ ..+|...|..-.++|+...|.+.+.+++.+.|.. +-++..|
T Consensus 71 ~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a 134 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIA 134 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHH
Confidence 4458899999999999986 2211 5568888999999999999999999999998864 4466666
Q ss_pred HHHHHcCC
Q 008540 490 QAYIQMAD 497 (562)
Q Consensus 490 ~a~~~l~~ 497 (562)
..-++.|.
T Consensus 135 ~~nl~~~~ 142 (161)
T 4h7y_A 135 LRNLNLQK 142 (161)
T ss_dssp HHHHHTTC
T ss_pred HHhhhcCC
Confidence 66666554
No 347
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.22 E-value=27 Score=26.21 Aligned_cols=23 Identities=22% Similarity=0.017 Sum_probs=11.6
Q ss_pred cHHHHHhhccCHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVL 475 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al 475 (562)
.+|.-.-+.|+|++|+..|..++
T Consensus 24 ~~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 34444445555665555554443
No 348
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.60 E-value=31 Score=25.83 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhCCCC
Q 008540 501 AEFDIKKALEIDPDN 515 (562)
Q Consensus 501 A~~~~~~al~l~p~~ 515 (562)
|++.|.++++..|+.
T Consensus 37 aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 37 AIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCH
Confidence 334455555656554
No 349
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.39 E-value=99 Score=29.61 Aligned_cols=107 Identities=8% Similarity=-0.039 Sum_probs=57.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHH-HHHHHHhhhcCCCChHHHHHHHHHHHHH------------HhcHHHHHhh---
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRY-EKAVKYIEYDTSFGDEEKKQAKALKVAC------------NLNNAACKLK--- 460 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y-~~al~~~~~~~~~~~~~~~~~~~~~~~~------------~~nla~~~~k--- 460 (562)
+.-+.++-..+.|.++++|++|+... .-|+.++...... .-..+-.+.+.+ ..++..++..
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~---sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~ 107 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGG---SGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDP 107 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcc---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 44466788888899999999999884 4444443321100 000000000000 0111111111
Q ss_pred -----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008540 461 -----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506 (562)
Q Consensus 461 -----~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~ 506 (562)
..-..+|+.+..+.=...-.++..|..+|..|..-+++.+|+.+|-
T Consensus 108 ~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 108 SEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1112344444444322223578889999999999999999999884
No 350
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=64.33 E-value=34 Score=26.00 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHhhhHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcC----CCChHHHHHHHHHHHHHHhcHHHHHhhc
Q 008540 396 IEAAGKKKEQGNTLFKA---GKYARASKRYEKAVKYIEYDT----SFGDEEKKQAKALKVACNLNNAACKLKL 461 (562)
Q Consensus 396 ~~~a~~~~~~G~~~~~~---g~~~~A~~~y~~al~~~~~~~----~~~~~~~~~~~~~~~~~~~nla~~~~k~ 461 (562)
.+.|-.+.++|-..=.. |+-++|+..|++++..+..-. ....+.++..+.+..+...|+..+.-++
T Consensus 13 h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL 85 (89)
T 3eab_A 13 HKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777 888999999999998765421 1245778888888888888887776554
No 351
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=62.05 E-value=60 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH
Q 008540 501 AEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 501 A~~~~~~al~l~p~~~~~~~~l 522 (562)
|++.|..+++..+.+...+..|
T Consensus 44 Aie~l~~alk~e~~~~~~k~~l 65 (117)
T 2cpt_A 44 AVQYFLHVVKYEAQGDKAKQSI 65 (117)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHH
Confidence 4445666666676665544433
No 352
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.53 E-value=23 Score=25.88 Aligned_cols=37 Identities=5% Similarity=0.099 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~ 523 (562)
.+|..+...|++++|..+|-+|+...|+-.+....+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5788888888888998888889988888755555444
No 353
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.39 E-value=13 Score=39.70 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=46.7
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
+...++.++|..|...+.+.-.......++.|++|+++..+|+.++|...|+++..
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33455789999999999876654446689999999999999999999999998864
No 354
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=60.38 E-value=15 Score=37.24 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC-----h---HHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHH
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG-----D---EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~-----~---~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~ 472 (562)
.+...++.+.+.++|.+|.-++.....++..+.... . -........+..++...+..+.+-+.|+.|+..|+
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l~k 116 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISLCK 116 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345678889999999999998865555544332110 0 00011122344456566666777788999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCC
Q 008540 473 KVLDLDSRNVKALYRRAQAYIQMAD 497 (562)
Q Consensus 473 ~al~~~p~~~ka~~~~a~a~~~l~~ 497 (562)
.++.....+..-|-.++.+|..+.+
T Consensus 117 ~L~~~yE~~~~Dy~~Ls~~~~~~a~ 141 (436)
T 2yin_A 117 ELAEQYEMEIFDYELLSQNLIQQAK 141 (436)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886554443446666777666553
No 355
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=57.96 E-value=60 Score=24.77 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 484 ALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 484 a~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
.+-|+|.+++.-|+|++|+++.++|.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34466666666666666665555444
No 356
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=57.89 E-value=47 Score=25.07 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=29.3
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (562)
..+..+...|..+|+.++|.+|+..|+++...-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 567788899999999999999999999998653
No 357
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.25 E-value=21 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHHhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHH
Q 008540 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK 483 (562)
Q Consensus 447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k 483 (562)
.+.-++.+|..++-.++|.+|..++..|+...|....
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 4555677888888888888888888888888776543
No 358
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.49 E-value=67 Score=24.54 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhCCCC
Q 008540 501 AEFDIKKALEIDPDN 515 (562)
Q Consensus 501 A~~~~~~al~l~p~~ 515 (562)
|++.|..+++.+|+.
T Consensus 41 Aie~l~~alk~e~~~ 55 (93)
T 1wfd_A 41 GIDMLLQVLKGTKES 55 (93)
T ss_dssp HHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHCCCH
Confidence 334455555555543
No 359
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=53.71 E-value=47 Score=33.81 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 008540 416 ARASKRYEKAVKYIEY 431 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~ 431 (562)
+.|+.+|++|+.++..
T Consensus 449 ~kAi~~Y~~Ai~~L~k 464 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQK 464 (526)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555443
No 360
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.65 E-value=75 Score=32.84 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=65.0
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+.+..+.-.|..+.-+++|.+|.+++..|++..|.+..... .+..++-.+-.|.+-+|+... +.+-
T Consensus 268 q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g--------fr~~a~K~lI~V~LLlG~iP~------r~lf 333 (523)
T 4b4t_S 268 LEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG--------FLQQSNKLHCCIQLLMGDIPE------LSFF 333 (523)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH--------HHHHHHHHHHHHHHHHTCCCC------HHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh--------HHHHHHHHHHhHHhhcCCCCC------hHHh
Confidence 35777888999999999999999999999998876553311 122223333444444565443 1111
Q ss_pred cCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH
Q 008540 477 LDSRN---VKALYRRAQAYIQMAD---LDLAEFDIKKALEIDPDNR 516 (562)
Q Consensus 477 ~~p~~---~ka~~~~a~a~~~l~~---~~~A~~~~~~al~l~p~~~ 516 (562)
..+.. ...|+.++.|+ +.|+ |+.+++.++..+.-+-...
T Consensus 334 ~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty~ 378 (523)
T 4b4t_S 334 HQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTYQ 378 (523)
T ss_dssp TTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCTH
T ss_pred hchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChhH
Confidence 12322 34577787776 4455 5666666777776665543
No 361
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=49.92 E-value=29 Score=37.30 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008540 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531 (562)
Q Consensus 483 ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~ 531 (562)
.+...+|+.++..|+|.-|.+.+..++..+|+|.+++.+++.+.+.+..
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666555554443
No 362
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=47.98 E-value=21 Score=38.45 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=43.4
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD 497 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~ 497 (562)
...+|...+..|+|..|.+.++.++..+|+|..|...+|.+|.++|.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999984
No 363
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=47.78 E-value=84 Score=23.39 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.8
Q ss_pred hccCHHHHHHHHHHH
Q 008540 460 KLKDYKQAEKLCTKV 474 (562)
Q Consensus 460 k~~~~~~A~~~~~~a 474 (562)
+.++|++|+..|..+
T Consensus 25 ~~g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 25 TATQYEEAYTAYYNG 39 (85)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 344455544444333
No 364
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=46.91 E-value=1.2e+02 Score=34.42 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=57.7
Q ss_pred HHhcHHHHHhhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Q 008540 450 CNLNNAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALE--IDPDNRDVKLEYK 523 (562)
Q Consensus 450 ~~~nla~~~~k~~~~~~A~~~~~~al~~----~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~--l~p~~~~~~~~l~ 523 (562)
.|+-+-.+|.+.|+.++|...+.+.-++ ..-|+-.|.-+-..|.+.|++++|.+.|++..+ +.|+-......+.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 3667778999999999999999764432 234678899999999999999999999998876 4576554444444
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.96 E-value=26 Score=39.55 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
.++..+.++-| ...+...|.++-.-|-+|++|+.+|++++|..+|++|-
T Consensus 819 ~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 819 KLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34455555543 44667788888888999999999999999999999875
No 366
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=45.42 E-value=90 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=17.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 485 LYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 485 ~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
...+|+=|..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44566667777777777777776664
No 367
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.35 E-value=82 Score=26.90 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=46.5
Q ss_pred hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHH-hcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN-LNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 402 ~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
-...|..+|+.|+|-+|...++.+=...+. .+ ++..-+ +..+. .--|..+++.|++..|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~---~~-~er~~l---qGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGR---GN-TESKFL---HGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCS---SS-HHHHHH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCC---Cc-hHHHHH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356888999999999999998876543321 11 122222 22223 4566777788999999999999876
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.33 E-value=58 Score=36.73 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKY 428 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (562)
.-+|..++..|++++|..+|++|-.-
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~g 869 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLV 869 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence 45788888999999999999887643
No 369
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=43.27 E-value=61 Score=30.13 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|++|+++. ..-..+ +.++..+.+|.+..|+. +++.++|++.+.+|+.
T Consensus 172 ~e~a~~aY~~A~~iA-~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 172 AEDALKAYKDATVVA-KDLEPT-------HPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHHH-TTSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357888999999987 432221 24567777888888776 7899999988888764
No 370
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=43.15 E-value=57 Score=29.83 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|++|+++....-..+ +.++..+.+|.+..|+. +++.++|++.+.+|+.
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578889999998765322211 24566777888888776 7888998888887664
No 371
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=42.73 E-value=1.6e+02 Score=30.27 Aligned_cols=48 Identities=6% Similarity=-0.042 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 464 YKQAEKLCTKVLDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~-----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|+..+.+++.|+..-|. ..-|+--+|++|+.+++|++|.+.+++++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777788888765443 1357888999999999999999999999863
No 372
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=42.68 E-value=1.1e+02 Score=23.33 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008540 498 LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG 541 (562)
Q Consensus 498 ~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 541 (562)
...++..-..+++.+|+|+.+..++......+.-.+..+-..-|
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~lseynl~RNaQSntiK 75 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIMSEYNLYRNAQSSAVK 75 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566678999998888887776666666555544433
No 373
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=42.29 E-value=1.1e+02 Score=23.13 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~ 519 (562)
++.+...|+-+++.++|.+|...|+++..+. +|+.+.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t-en~~i~ 89 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS-DNEEIK 89 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc-cCHHHH
Confidence 4455566777778888888888888877654 444443
No 374
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.12 E-value=34 Score=26.39 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008540 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522 (562)
Q Consensus 487 ~~a~a~~~l~~~~~A~~~~~~al~l~p~~~~~~~~l 522 (562)
.+|..++..|+++.|+.+|-+|+.+.|.-.+....|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 577888888888888888888888877654444443
No 375
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=40.19 E-value=68 Score=29.79 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|++|.++....-..+ +.++..+.+|.+..|+. +++.++|+..+++|+.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pT-------hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677889999988754322211 24566777888887776 6888888888777654
No 376
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=40.16 E-value=68 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~ 476 (562)
-+.|...|++|..+....-..+ +.++..+.+|.+..|+. +++.++|++.+++|+.
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPT-------HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678889999998764322211 24566777888887776 7888888888777654
No 377
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.20 E-value=1.4e+02 Score=25.54 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=43.9
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCC------HHHHHH-HHHHH--HHcCCHHHHHHHHHHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN------VKALYR-RAQAY--IQMADLDLAEFDIKKALE 510 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~------~ka~~~-~a~a~--~~l~~~~~A~~~~~~al~ 510 (562)
..+..++..++|-+|=+.++.+-...+.. .+++.. +|.++ .+.|+..-|...+.+|+.
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566667799999999999887765544 556666 55544 556999999999999987
No 378
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=39.20 E-value=70 Score=29.74 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHH
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVL 475 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al 475 (562)
-+.|...|+.|+.+....-..+ +.++..+.+|.+..|+. +++.++|+..+.+|+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3578889999998865322211 24567778888888776 789999998888765
No 379
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=38.97 E-value=60 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008540 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515 (562)
Q Consensus 482 ~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~p~~ 515 (562)
+..+|.+|+.++..++|.+|.++|..|+..-|.+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4567777777777777777777777777776654
No 380
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=38.51 E-value=1e+02 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008540 498 LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK 535 (562)
Q Consensus 498 ~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~~~~~~~ 535 (562)
..+++..-.++|+-+|+|+.+..+|...-.++.-....
T Consensus 26 ~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNa 63 (85)
T 2ca5_A 26 LQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNA 63 (85)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677898887777776554444444333
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.38 E-value=30 Score=39.95 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=38.4
Q ss_pred HHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
+..+++.+.++-|.. .+...|.++-.-|-+|++|+..|++++|..+|++|-
T Consensus 819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334455555554433 445667787788999999999999999999999874
No 382
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=34.65 E-value=81 Score=28.62 Aligned_cols=71 Identities=13% Similarity=-0.055 Sum_probs=47.6
Q ss_pred HhhhHHHHHHHH-----HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHH
Q 008540 399 AGKKKEQGNTLF-----KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCT 472 (562)
Q Consensus 399 a~~~~~~G~~~~-----~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~ 472 (562)
+-.+|.+|..|- ..|+-+.|...|+.|.++....-.. -+.++.-+.+|.+..|+. +++.++|+...+
T Consensus 120 VFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~p-------thPirLGLaLNfSVFyYEIln~p~~Ac~lAk 192 (227)
T 2o8p_A 120 FFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDK-------IEQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192 (227)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGG-------GGGSCHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCC-------CChHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 555666665442 4566788999999999875432111 012345566788777664 788999999999
Q ss_pred HHHh
Q 008540 473 KVLD 476 (562)
Q Consensus 473 ~al~ 476 (562)
+|+.
T Consensus 193 ~Afd 196 (227)
T 2o8p_A 193 SLGK 196 (227)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 383
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=34.59 E-value=8.3 Score=35.90 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD 432 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~ 432 (562)
.....|..+..+|..+=+.|+|++|+.+|..|++++-..
T Consensus 18 p~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~a 56 (257)
T 2ymb_A 18 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQV 56 (257)
T ss_dssp ---------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345567788889999999999999999999999987653
No 384
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=34.43 E-value=64 Score=21.85 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=33.7
Q ss_pred ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008540 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE 430 (562)
Q Consensus 391 ~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~ 430 (562)
+..+.+..|.++-..+...+.=.+...|++..++|++++.
T Consensus 12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~ 51 (53)
T 2rkl_A 12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLN 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHh
Confidence 4456778888888888888888999999999999998764
No 385
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=34.41 E-value=94 Score=28.39 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred HhhhHHHHHHH-----HHcCc-----HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHH
Q 008540 399 AGKKKEQGNTL-----FKAGK-----YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQA 467 (562)
Q Consensus 399 a~~~~~~G~~~-----~~~g~-----~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A 467 (562)
+-.+|.+|..+ |..|+ -+.|...|++|.++....-..+ +.++..+.+|.+..|+. +++.++|
T Consensus 123 VFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyyEiln~~~~A 195 (236)
T 3iqu_A 123 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPT-------NPIRLGLALNFSVFHYEIANSPEEA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34456666654 22333 4678899999998764322221 24567777888887774 6888888
Q ss_pred HHHHHHHHh
Q 008540 468 EKLCTKVLD 476 (562)
Q Consensus 468 ~~~~~~al~ 476 (562)
++.+++|+.
T Consensus 196 c~lAk~Afd 204 (236)
T 3iqu_A 196 ISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 386
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=33.86 E-value=91 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=32.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHh
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYI 429 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~ 429 (562)
.++-++.|..+.+.|..++++|++..|+.++.=|--++
T Consensus 28 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 65 (86)
T 2oo2_A 28 DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWL 65 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999887655543
No 387
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=32.63 E-value=1e+02 Score=23.33 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=31.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHH
Q 008540 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428 (562)
Q Consensus 392 ~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~ 428 (562)
.++-++.|..+.+.|..++++|++..|+.++.=|--+
T Consensus 32 a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~Gw 68 (87)
T 2pmr_A 32 EEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGL 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999887655443
No 388
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.07 E-value=83 Score=31.87 Aligned_cols=47 Identities=17% Similarity=0.029 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSR--------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~--------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|+..+.+++.|+..-|. ..-|+.-+|++|+.+++|++|.+..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 67788888888776443 245788899999999999999999999985
No 389
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=31.44 E-value=1.6e+02 Score=22.41 Aligned_cols=63 Identities=19% Similarity=0.105 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 403 ~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
...|..+|+.|+|-+|.+.++.+=...+ .++..-. +-.+..--|..+.+.|++ |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~------~~~~~~~---qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKAT------GEERRLL---QGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC------HHHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC------CchHHHH---HHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4578899999999999999887765432 1222222 222233345555566676 7777777765
No 390
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=30.98 E-value=2.1e+02 Score=29.12 Aligned_cols=48 Identities=8% Similarity=-0.118 Sum_probs=37.7
Q ss_pred HH-HHHHHHHHHHhc-CC--------CCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHh
Q 008540 464 YK-QAEKLCTKVLDL-DS--------RNVKALYRRAQAYIQMA---------DLDLAEFDIKKALEI 511 (562)
Q Consensus 464 ~~-~A~~~~~~al~~-~p--------~~~ka~~~~a~a~~~l~---------~~~~A~~~~~~al~l 511 (562)
|+ ..+.+++.|+.. -| +..-|+--+|++|+.++ +|++|.+.+++++..
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~~ 226 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIKS 226 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHcc
Confidence 66 677888888876 34 22457788899999988 899999999999863
No 391
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.48 E-value=1e+02 Score=31.36 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008540 464 YKQAEKLCTKVLDLDSRN--------VKALYRRAQAYIQMADLDLAEFDIKKALEID 512 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~--------~ka~~~~a~a~~~l~~~~~A~~~~~~al~l~ 512 (562)
|+..+.+++.|+..-|.. .-|+--+|++|+.+++|++|.+..++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 778888999998765532 4578889999999999999999999998753
No 392
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=29.33 E-value=91 Score=29.04 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhhcC--CCChHHHHHHHHHHHHHHhcHHHHHhh-ccCHHHHHHHHHHHHhc
Q 008540 415 YARASKRYEKAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~ 477 (562)
-+.|...|++|.++....- .. -+.++.-+.+|.+..|+. +++.++|++.+++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~p-------ThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYP-------SDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGG-------GCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4678889999988753222 11 124567777888888774 78889998888887653
No 393
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.02 E-value=94 Score=31.53 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSR--------NVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~--------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
|+..+.+++.|+.+-|. ..-|+.-+|++|+.+++|++|.+..++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 57788888888775443 245788899999999999999999999986
No 394
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=28.97 E-value=1.9e+02 Score=29.93 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 464 YKQAEKLCTKVLDLDSR-------------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~-------------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|+..+.+|+.|+..-|. ..-|+--+|++|+..++|++|.+.+++++..
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 56677788888765552 1347888999999999999999999999864
No 395
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.46 E-value=1.1e+02 Score=31.48 Aligned_cols=48 Identities=21% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008540 464 YKQAEKLCTKVLDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEI 511 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~-----------~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l 511 (562)
|+..+.+++.|+..-|. ..-|+--+|++|+.+++|++|.+..++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66778888888765442 2347788999999999999999999999875
No 396
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=32.89 E-value=13 Score=39.99 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=44.7
Q ss_pred HhcHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 008540 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500 (562)
Q Consensus 451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~ 500 (562)
.+.+|...+..|+|..|.+.++.++..+|+|..|...+|.+|.++|.-.+
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 45678888899999999999999999999999999999999999986543
No 397
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=25.79 E-value=78 Score=32.09 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
|+..+..++.|+..+|..... .+.-+..++.-+|.+|+-+++|++|+..|++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~-------gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNN-------GRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCT-------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccC-------CeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 344555566666666542211 0111344566788899999999999999999985
No 398
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.52 E-value=4e+02 Score=31.05 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcHHHHHhhcc--------CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008540 439 EKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL-DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509 (562)
Q Consensus 439 ~~~~~~~~~~~~~~nla~~~~k~~--------~~~~A~~~~~~al~~-~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al 509 (562)
++++.+..++.+++..+.++.++. ..+.-.+.|.++++. |+++.|++.....-...+++|-.|++.+.+++
T Consensus 1232 ~m~~~k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~ 1311 (1354)
T 3lxu_X 1232 NMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLI 1311 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777766555554432 233334445555553 55667766555554557899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHH
Q 008540 510 EIDPDNRDVKLEYKTLKEKM 529 (562)
Q Consensus 510 ~l~p~~~~~~~~l~~l~~~~ 529 (562)
+-.| ..+...++..+.+.+
T Consensus 1312 ~~k~-~~~~~~~~~~~~~~l 1330 (1354)
T 3lxu_X 1312 EEKR-TRDHFVELAAINGAL 1330 (1354)
T ss_dssp HHTC-CHHHHHHHHHHHHHH
T ss_pred hccc-cHHHHHHHHHHHHHc
Confidence 8776 445555554444433
No 399
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.31 E-value=2e+02 Score=21.10 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=28.7
Q ss_pred cCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 389 ~~~~~e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
.|+..+..+. ...|..+-..|+|+.|+.+|+.++..+..
T Consensus 6 ~~~~~~i~e~----~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 6 TMSLQMIVEN----VKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp SSSSHHHHHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHH----HHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3455554444 35666777789999999999999987764
No 400
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=24.69 E-value=3.5e+02 Score=23.62 Aligned_cols=105 Identities=18% Similarity=0.095 Sum_probs=76.9
Q ss_pred HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc---------------------------------CCCChHHHHHH
Q 008540 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD---------------------------------TSFGDEEKKQA 443 (562)
Q Consensus 397 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~---------------------------------~~~~~~~~~~~ 443 (562)
..+..-...+...+..|+.+.|.....+|-..+... ...+++.
T Consensus 33 ~~A~~DI~~AR~aL~~G~~~~Ak~lL~~A~~~L~~a~~d~~~f~ka~~k~~~~~~~~iPI~~~l~v~edf~~tpeK---- 108 (191)
T 3dza_A 33 ANAMRDIQFARLALFHGQPDSAKKLTDDAAALLAADDASWAKFVKTDAKAKMIADRYVIINASIALSEDYVATPEK---- 108 (191)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCHHHHHTTBCTTCCCCSSSSCEEEEEEEEEEECCCCCCHHH----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhchHHHHhhcccCCCCCCceEEEcceeeeeccccCChHH----
Confidence 345556667777788899999999999998876531 0011211
Q ss_pred HHHHHHHHhcHHHHHhhccCHHHHHHHHHHHH-h------cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008540 444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVL-D------LDS-RNVKALYRRAQAYIQMADLDLAEFDIKKALE 510 (562)
Q Consensus 444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al-~------~~p-~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~ 510 (562)
.....-|.-+++.|+.+.|.+.++-+= . +-| ........+|..++..|+|.+|-..|+.|..
T Consensus 109 -----~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT~~~V~~A~~ll~~gk~yeAn~aLk~Aed 178 (191)
T 3dza_A 109 -----ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQTRKAVAQSQELLKAGKYYEANLVLKGAEE 178 (191)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 224577889999999999999887761 1 123 2356677899999999999999999998864
No 401
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.32 E-value=2.6e+02 Score=27.33 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEK 528 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~~ 528 (562)
|.+|+...++-. ...++.-|..+|-+|++.+++.+|+..+-.|-.. .-++.++.+++-.+...
T Consensus 280 ~~~AI~sa~~yY--~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAne 348 (472)
T 3re2_A 280 FKEAITVAKREY--SDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIAND 348 (472)
T ss_dssp HHHHHHHHHHHS--TTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--ccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 445555444433 3456777888888999999999999998777543 33456676666555433
No 402
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=23.96 E-value=4.7e+02 Score=24.81 Aligned_cols=124 Identities=12% Similarity=0.005 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc--
Q 008540 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-- 477 (562)
Q Consensus 400 ~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-- 477 (562)
.+..++=...+..|+|-+|.+.|+......-..... ...+.+++.-|..+++.+++..|.+.+.-.++.
T Consensus 14 ~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~---------~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~ 84 (312)
T 2wpv_A 14 AKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSY---------EHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYD 84 (312)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 334445556777899999999998777655433221 123444667888899999999998877666543
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHH
Q 008540 478 ---DSRNVKALYRRAQAYIQMADLDL-AEFDIKKALEI-------DPDNRDVKLEYKTLKEKMKEY 532 (562)
Q Consensus 478 ---~p~~~ka~~~~a~a~~~l~~~~~-A~~~~~~al~l-------~p~~~~~~~~l~~l~~~~~~~ 532 (562)
.+-+....-|+..++.....-+. =...+++|++- .-.+++....++...-+..+.
T Consensus 85 ~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~ 150 (312)
T 2wpv_A 85 LAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFV 150 (312)
T ss_dssp HTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCH
Confidence 23445566677766665442221 12233333321 124667777776654443333
No 403
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=23.90 E-value=5.1e+02 Score=25.21 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHcC------------cHHHHHHHHHHHHHHhhhcCCCChHH-------HHHHHHHHHHHHhcHH
Q 008540 395 KIEAAGKKKEQGNTLFKAG------------KYARASKRYEKAVKYIEYDTSFGDEE-------KKQAKALKVACNLNNA 455 (562)
Q Consensus 395 ~~~~a~~~~~~G~~~~~~g------------~~~~A~~~y~~al~~~~~~~~~~~~~-------~~~~~~~~~~~~~nla 455 (562)
..+.+..+.+.|..+.+.+ ..+.|...|++|-.++..-....... ...+..-...++.+++
T Consensus 110 ~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~ 189 (376)
T 3r9m_A 110 VFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQC 189 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHH
Q ss_pred HHHhhccCHHHHHH-----------------HHHHHHhcCCCC--------------------HHHHHHHHHHHHHcCCH
Q 008540 456 ACKLKLKDYKQAEK-----------------LCTKVLDLDSRN--------------------VKALYRRAQAYIQMADL 498 (562)
Q Consensus 456 ~~~~k~~~~~~A~~-----------------~~~~al~~~p~~--------------------~ka~~~~a~a~~~l~~~ 498 (562)
+++.+.--|.+|+. +|++|...-... ..|+|+.|..+...+++
T Consensus 190 LAQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~ 269 (376)
T 3r9m_A 190 QAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKC 269 (376)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCC
Q 008540 499 DLAEFDIKKALEIDPDNRDVKL------------------EYKTLKEKMKEYNKKEAKFYGNMFAKMTEPKEAEPM 556 (562)
Q Consensus 499 ~~A~~~~~~al~l~p~~~~~~~------------------~l~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 556 (562)
.+|+..|+.|.+.--.-....+ .+..+...+++..++..+.-.-+|-. ..+...|.
T Consensus 270 GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~~--~VP~~~p~ 343 (376)
T 3r9m_A 270 GEAIRSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIYFQ--KIPTEAPQ 343 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhHHHHHHHHHHHHHHHHHhhccceecc--cCCCCCCC
No 404
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=23.63 E-value=4.5e+02 Score=26.72 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Q 008540 464 YKQAEKLCTKVLDLDSR----------NVKALYRRAQAYIQM------ADLDLAEFDIKKALE 510 (562)
Q Consensus 464 ~~~A~~~~~~al~~~p~----------~~ka~~~~a~a~~~l------~~~~~A~~~~~~al~ 510 (562)
|+..+.+++.|...-|. ..-|+--+|++|+.. ++|++|.+.+++++.
T Consensus 169 y~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 169 YTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 67788899988875442 144777888888875 899999999999985
No 405
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.58 E-value=68 Score=32.62 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 416 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
+..+..++.|+..++..... .+.-+..++.-+|.+|+-+++|++|+..|++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~-------gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNK-------GKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCT-------TSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCC-------CeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44455555566665542211 0112344566678888889999999999999985
No 406
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=22.74 E-value=4.8e+02 Score=26.49 Aligned_cols=94 Identities=10% Similarity=-0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhcCC-CCh-HHHHHHHHHHHHHHhcHHHHHhh------------------ccCHHHHHHHHHHHHh
Q 008540 417 RASKRYEKAVKYIEYDTS-FGD-EEKKQAKALKVACNLNNAACKLK------------------LKDYKQAEKLCTKVLD 476 (562)
Q Consensus 417 ~A~~~y~~al~~~~~~~~-~~~-~~~~~~~~~~~~~~~nla~~~~k------------------~~~~~~A~~~~~~al~ 476 (562)
..+...+.+|+.++.... ... .-..+.+-+++-+|++|...|-. ..-|+..+.+++.|+.
T Consensus 94 ~~I~~aN~~i~~~~~~~~~~~~~~~~aEa~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~ 173 (499)
T 3jys_A 94 YIVALVNEFLKNIPNAPESIDKESYIAQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKP 173 (499)
T ss_dssp HHHHHHHHHHHHGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 456666666666554321 111 11334555566666666665522 1236778888888887
Q ss_pred cCCCC---------HHHHHHHHHHHH------HcCCHHHHHHHHHHHHH
Q 008540 477 LDSRN---------VKALYRRAQAYI------QMADLDLAEFDIKKALE 510 (562)
Q Consensus 477 ~~p~~---------~ka~~~~a~a~~------~l~~~~~A~~~~~~al~ 510 (562)
.-|.. .-|+--+|++|+ ..++|++|++.+++++.
T Consensus 174 ~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 174 NLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp GSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 55432 336777888877 57899999999999985
No 407
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.56 E-value=70 Score=32.92 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHh
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~ 476 (562)
|+..+..++.|+..+|....... ..+.-+..++.-+|.+|+-+++|++|+..|++++.
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~----~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDA----KHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSS----TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCccc----CCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555666666766654321100 00111344566788889999999999999999985
No 408
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=21.88 E-value=36 Score=20.22 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 008540 1 MDEDFDIPAAN 11 (562)
Q Consensus 1 ~~~~~~~~~~~ 11 (562)
|||||-+....
T Consensus 20 MddDFqL~~~~ 30 (34)
T 1lqb_D 20 MDDDFQLRSFD 30 (34)
T ss_pred cCcccccccCC
Confidence 78999876543
No 409
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=21.65 E-value=2.5e+02 Score=31.14 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEEEEEEc-CCC-------------------------------EEeecCCCCCcEEEEcCCCccchhHHHH
Q 008540 52 TPENGDEVEVHYTGTLL-DGT-------------------------------QFDSSRDRSTPFKFTLGQGNVIKGWDIG 99 (562)
Q Consensus 52 ~~~~gd~V~v~y~~~~~-~g~-------------------------------~~~~t~~~~~p~~~~~g~~~~~~g~~~~ 99 (562)
.+..|+.|.|.|++.+. +|+ .+++. .-+.|.+|.|.+.+-++-.
T Consensus 560 ~i~~gs~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ies~----~e~~fe~g~g~~~~~le~v 635 (950)
T 3htx_A 560 SITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESEYSANCESSVEPIESN----EEIEFEVGTGSMNPHIESE 635 (950)
T ss_dssp CCCTTEEEEEEEEEEEEECC----------------------------CCCEEEEEE----EEEEEEETTTCBCHHHHHH
T ss_pred ccCCCcEEEEEEEEEEEecCcccccccccccccccccccccccccchhhhhhccccc----HHHHHHHhcCCccchhhhe
Confidence 45789999999999875 331 23332 4588999999999999999
Q ss_pred HcccccccEEEEEe
Q 008540 100 IKTMKKGENAVFTI 113 (562)
Q Consensus 100 l~gm~~Ge~~~v~i 113 (562)
+.-|..|+...|..
T Consensus 636 V~qms~gqT~~F~~ 649 (950)
T 3htx_A 636 VTQMTVGEYASFKM 649 (950)
T ss_dssp HTTCCTTCEEEEEE
T ss_pred eeeccccceeEEec
Confidence 99999999998873
No 410
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=21.46 E-value=82 Score=31.73 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHcCcHHHHHHHHHHHHHHh----------hhcCC----CCh---HH--HHH---------HHHHHHHHHh
Q 008540 401 KKKEQGNTLFKAGKYARASKRYEKAVKYI----------EYDTS----FGD---EE--KKQ---------AKALKVACNL 452 (562)
Q Consensus 401 ~~~~~G~~~~~~g~~~~A~~~y~~al~~~----------~~~~~----~~~---~~--~~~---------~~~~~~~~~~ 452 (562)
-+..+++.+.+.++|.+|.-++-.+..+. +.+.. ... ++ ... -...+..++.
T Consensus 13 wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll~ 92 (428)
T 2wm9_A 13 WLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLE 92 (428)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHHH
Confidence 35677788899999999999887444321 11100 000 00 000 0111223444
Q ss_pred cHHHHHhhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008540 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501 (562)
Q Consensus 453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~a~a~~~l~~~~~A 501 (562)
..+..+.+-+.|+.|+..|+.++.....+ .-|-.++.+|..+.++-+.
T Consensus 93 ~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a~~y~~ 140 (428)
T 2wm9_A 93 QCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLHRAYSK 140 (428)
T ss_dssp HHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 45556667778999999999988654433 4466777777777554333
No 411
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=21.27 E-value=4.9e+02 Score=25.41 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 008540 518 VKLEYKTLKEKMKEYNKKEAKFY 540 (562)
Q Consensus 518 ~~~~l~~l~~~~~~~~~~~~~~~ 540 (562)
+..+...+...+++.++...-.|
T Consensus 318 l~~l~~~i~~~l~~a~kdNd~IY 340 (380)
T 3c3r_A 318 VKDFSDKINRALAAAKKDNDFIY 340 (380)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhCeec
Confidence 34455666666666655555454
No 412
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=20.82 E-value=21 Score=36.36 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008540 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY 431 (562)
Q Consensus 394 e~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~al~~~~~ 431 (562)
+.++.|..+..+|..+-+.|+|++|+.+|.+|++++-.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999998764
No 413
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=20.27 E-value=72 Score=32.55 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhcHHHHHhhccCHHHHHHHHHHHHhc
Q 008540 415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477 (562)
Q Consensus 415 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~ 477 (562)
|+..+..++.|+..++..... .+.-+..++.-+|.+|+-+++|++|+..|++++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~-------gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSN-------GYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCT-------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccC-------CcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 344455556666666542211 01113445667888999999999999999999863
Done!