Query 008541
Match_columns 562
No_of_seqs 198 out of 824
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 89.9 1.2 4.3E-05 45.7 10.0 60 145-211 298-357 (444)
2 4djk_A Probable glutamate/gamm 89.0 3.7 0.00013 42.9 12.9 34 47-80 202-237 (511)
3 3l1l_A Arginine/agmatine antip 83.4 4 0.00014 41.8 9.5 16 51-66 196-211 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 31.5 20 0.00067 31.8 1.9 22 532-555 30-51 (124)
5 3luu_A Uncharacterized protein 26.1 22 0.00076 30.0 1.2 17 531-547 34-50 (101)
6 2l6n_A Uncharacterized protein 25.0 30 0.001 31.1 1.9 15 532-546 37-51 (132)
7 3ghp_A Cellulosomal scaffoldin 21.0 26 0.00089 34.2 0.7 7 375-381 121-127 (227)
8 1tyj_A Cellulosomal scaffoldin 19.3 25 0.00085 33.0 0.2 13 22-34 37-49 (170)
9 2o7g_A Probable RNA polymerase 15.9 54 0.0019 26.9 1.5 35 521-555 76-110 (112)
10 3l8q_A Cellulosomal scaffoldin 14.9 44 0.0015 34.5 0.7 13 22-34 209-221 (350)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=89.94 E-value=1.2 Score=45.69 Aligned_cols=60 Identities=5% Similarity=-0.018 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEecCchhhhhhhcceeeehHHH
Q 008541 145 IVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFI 211 (562)
Q Consensus 145 ii~Qai~Lg~fPr~ki~hTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~i 211 (562)
+....-+-|.+|+.= -+++ ++. |...-++......+...+-+-+.+.+.++++...+..+
T Consensus 298 ~l~a~a~dg~lP~~f-~~~~---~~~---P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 357 (444)
T 3gia_A 298 VAYSLAKDGELPEFF-ERKV---WFK---STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLF 357 (444)
T ss_dssp HHHHHHHHSSCCSSC-CTTS---CCS---CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHH-hCCC---CCC---CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 444555779999641 1222 222 65333332222222222335666777766655444433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=88.95 E-value=3.7 Score=42.94 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=21.7
Q ss_pred ceeeeecchhhhhcchhhhhhccCCCc--ccceeee
Q 008541 47 TGWISLGGLLLCITGTEAMFADLGHFT--ALSIRLA 80 (562)
Q Consensus 47 ~g~~~LG~V~L~iTG~EALyADlGHFg--~~~I~~a 80 (562)
.+|..+..++.+.+|-|+.-.=-+-.- +|.+..|
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~a 237 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLA 237 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHH
Confidence 456677888999999998644333332 3444444
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=83.44 E-value=4 Score=41.77 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=10.6
Q ss_pred eecchhhhhcchhhhh
Q 008541 51 SLGGLLLCITGTEAMF 66 (562)
Q Consensus 51 ~LG~V~L~iTG~EALy 66 (562)
.+..++.+.+|-|+.-
T Consensus 196 ~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 196 TLNVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHHHTTTTTTHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3445667788999753
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=31.46 E-value=20 Score=31.84 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHHHhhhcCCCCcccccCCCCeee
Q 008541 532 YSFLRKNCRGPSVALNIPHISLIE 555 (562)
Q Consensus 532 Y~FLRkNcR~~~~~L~IP~~~lle 555 (562)
|.|||.||+++...-. .+++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l~ 51 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVLQ 51 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCCC
T ss_pred HHHHHhcCCCcccCCC--Cccccc
Confidence 5899999999765443 455543
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=26.12 E-value=22 Score=30.04 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=10.4
Q ss_pred HHHHHhhhcCCCCcccc
Q 008541 531 LYSFLRKNCRGPSVALN 547 (562)
Q Consensus 531 ~Y~FLRkNcR~~~~~L~ 547 (562)
=|.|||.||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37899999997765443
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=24.96 E-value=30 Score=31.08 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.1
Q ss_pred HHHHhhhcCCCCccc
Q 008541 532 YSFLRKNCRGPSVAL 546 (562)
Q Consensus 532 Y~FLRkNcR~~~~~L 546 (562)
|.|||.||+.+...-
T Consensus 37 ~~wLRd~Cpcaec~~ 51 (132)
T 2l6n_A 37 CELLRVYSPSAEVHG 51 (132)
T ss_dssp HHHHHHSCSCSSSSS
T ss_pred HHHHHhcCCCcccCC
Confidence 699999999876543
No 7
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=20.99 E-value=26 Score=34.19 Aligned_cols=7 Identities=29% Similarity=0.430 Sum_probs=2.9
Q ss_pred EEEeeec
Q 008541 375 VRYGYKD 381 (562)
Q Consensus 375 ~ryGy~d 381 (562)
+--|||-
T Consensus 121 avIgFKV 127 (227)
T 3ghp_A 121 AVVGFKV 127 (227)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 3334444
No 8
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=19.33 E-value=25 Score=33.03 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred hcCCcceeeecCh
Q 008541 22 IHWNPKVISAISP 34 (562)
Q Consensus 22 ~~~~p~Vl~A~nP 34 (562)
++|||+||+|++|
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
No 9
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=15.85 E-value=54 Score=26.93 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHhhhcCCCCcccccCCCCeee
Q 008541 521 SFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIE 555 (562)
Q Consensus 521 ~~lKK~vIn~~Y~FLRkNcR~~~~~L~IP~~~lle 555 (562)
+|+.+++.|.+.+++||+.|.+.....-.+..+++
T Consensus 76 ~wl~~i~~n~~~d~~R~~~~~~~~~~~~~~~~~~d 110 (112)
T 2o7g_A 76 TWLLAIARHVVADHIRHVRSRPRTTRGARPEHLID 110 (112)
T ss_dssp HHHHHHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhhhcc
No 10
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=14.87 E-value=44 Score=34.53 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=0.0
Q ss_pred hcCCcceeeecCh
Q 008541 22 IHWNPKVISAISP 34 (562)
Q Consensus 22 ~~~~p~Vl~A~nP 34 (562)
++|||+||+|+||
T Consensus 209 IKYDP~VLqaV~p 221 (350)
T 3l8q_A 209 IKYDPTVLQAVNP 221 (350)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhHeeeccC
Done!