Query 008541
Match_columns 562
No_of_seqs 198 out of 824
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:58:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008541.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008541hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 20.7 30 0.0022 21.2 2.3 20 257-276 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 16.3 39 0.0028 26.2 2.8 24 520-543 73-96 (113)
3 d2yvxa3 f.57.1.1 (A:276-448) M 12.8 20 0.0015 31.4 0.0 116 87-215 12-129 (173)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.7 26 0.0019 25.4 -0.0 39 88-128 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 9.4 71 0.0051 24.6 2.3 26 355-380 57-82 (103)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 8.5 83 0.0061 23.1 2.3 29 354-382 47-75 (89)
7 d1ug8a_ d.68.7.1 (A:) Poly(A)- 7.3 68 0.005 25.1 1.2 22 384-405 7-28 (87)
8 d1biha4 b.1.1.4 (A:307-395) He 7.2 1.1E+02 0.0082 22.1 2.5 22 355-376 53-74 (89)
9 d1cs6a3 b.1.1.4 (A:209-299) Ax 7.1 1.2E+02 0.0088 21.9 2.6 41 336-376 35-75 (91)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 6.8 2E+02 0.015 27.9 4.9 74 210-283 355-430 (509)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.67 E-value=30 Score=21.18 Aligned_cols=20 Identities=30% Similarity=0.850 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHhH
Q 008541 257 GWVPLVLSSVFMVVMYIWHY 276 (562)
Q Consensus 257 GW~pl~ia~~~~~iM~~W~~ 276 (562)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777788888854
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=16.34 E-value=39 Score=26.18 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCC
Q 008541 520 SSFVKRFMIDILYSFLRKNCRGPS 543 (562)
Q Consensus 520 S~~lKK~vIn~~Y~FLRkNcR~~~ 543 (562)
.+|+.+++-|.+.+++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998754
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=12.81 E-value=20 Score=31.40 Aligned_cols=116 Identities=9% Similarity=0.168 Sum_probs=64.1
Q ss_pred hHHHhhhccc--hhhhccCCccccCcceeeccCcchhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHhCCCCceeEEecC
Q 008541 87 PCLVVQYMGQ--AAYLSKNLDKIPNSFYDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTS 164 (562)
Q Consensus 87 P~LlL~Y~GQ--aA~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fPr~ki~hTS 164 (562)
|-|+++.+|+ +|+++.+-|+.-+.+-. =..+.|+ ++-++.-++||+. +++-+++++|..-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 3355555554 56677655543332211 1256666 6778888999986 4888999999643211 11
Q ss_pred CccCCceeechhhHHHHHHHhheeEEecCchhhhhhhcceeeehHHHHHHH
Q 008541 165 RHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFL 215 (562)
Q Consensus 165 ~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~M~iTT~L 215 (562)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|++.+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 223344566666665555444444445555555555555555555555544
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.67 E-value=26 Score=25.42 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHhhhccchhhhccCCccccCcceeeccCcchhHHHHHHH
Q 008541 88 CLVVQYMGQAAYLSKNLDKIPNSFYDSIPEPVFWPVFVVAT 128 (562)
Q Consensus 88 ~LlL~Y~GQaA~l~~~p~~~~npFf~~~P~~~~~P~~vlAt 128 (562)
++++--++=+.|+.++.. ++.-|.++|+.+.|-.+-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444444556667777644 334599999999997665543
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.39 E-value=71 Score=24.58 Aligned_cols=26 Identities=23% Similarity=0.545 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 008541 355 EERFLIGRVCPRPYRMYRCIVRYGYK 380 (562)
Q Consensus 355 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 380 (562)
+....|..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 44577888888888999999988664
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.54 E-value=83 Score=23.08 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCCCcEEEEEEEEeeecc
Q 008541 354 PEERFLIGRVCPRPYRMYRCIVRYGYKDV 382 (562)
Q Consensus 354 ~~eR~~v~~~~~~~~~~~r~~~ryGy~d~ 382 (562)
...++.+..+...+.|.|+|.++.|+.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 45668888888888899999999887554
No 7
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.35 E-value=68 Score=25.13 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.7
Q ss_pred CCchhHHHHHHHHHHHHHhhhc
Q 008541 384 RDDGDFENQLIQSIAEFIQMEA 405 (562)
Q Consensus 384 ~~~~~f~~~l~~~l~~fI~~e~ 405 (562)
.+..+|.+++++.|.+|++.+.
T Consensus 7 ~d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 7 GDQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHHHHHHcCcc
Confidence 3457899999999999999764
No 8
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}
Probab=7.15 E-value=1.1e+02 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred CceEEEEEecCCCCcEEEEEEE
Q 008541 355 EERFLIGRVCPRPYRMYRCIVR 376 (562)
Q Consensus 355 ~eR~~v~~~~~~~~~~~r~~~r 376 (562)
+..+.+..+...+.|.|+|+++
T Consensus 53 ~~~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 53 DSGLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp TTEEEESSCCSTTCEEEEEEEE
T ss_pred eeeEEECCCChhhCEEEEEEEE
No 9
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.07 E-value=1.2e+02 Score=21.91 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=0.0
Q ss_pred ceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEE
Q 008541 336 HKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVR 376 (562)
Q Consensus 336 h~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~~r~~~r 376 (562)
.++.|+-.=.......+..+..+.+..+...+.|.|+|++.
T Consensus 35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.81 E-value=2e+02 Score=27.91 Aligned_cols=74 Identities=11% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccccC--CccHHHHHHHHHHHHHHHHhHhHHHHHh
Q 008541 210 FITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQ--GGWVPLVLSSVFMVVMYIWHYGTRKKYN 283 (562)
Q Consensus 210 ~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~ie~~f~sa~l~Ki~~--GGW~pl~ia~~~~~iM~~W~~G~~~~~~ 283 (562)
.+-++...+.=..-|++++...+...+++...=+.+++.......| .+=+.+.+.+.+.++...|.||.++..+
T Consensus 355 ~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~ 430 (509)
T d2a65a1 355 IMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWE 430 (509)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHHHHHH
Done!