BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008542
(562 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 473 bits (1218), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++P IGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NAKP N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 7 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 66
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 67 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 126
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 127 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 186
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++P IGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 187 SYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 245
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 246 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 305
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 306 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 362
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NAKP N P + TYLRLS L
Sbjct: 363 LSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLL 422
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 423 QKSNFNIFKKFVLKMHAD 440
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCI--SAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G + + K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNF+C+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 473 bits (1216), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP G+LRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA +NALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 295/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNF C+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 295/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H L FTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 295/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNF C+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 295/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGV VD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/438 (52%), Positives = 296/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +IEVGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/438 (52%), Positives = 295/438 (67%), Gaps = 10/438 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YVPVYVMLPLG+++++ DP+ L QL L++ VDGVMVD WWGI+E P+ Y+W
Sbjct: 11 YVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR 70
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR L Q+V+E L LQ +MSFH+CGGNVGD V+IP+PQWV++IG++N +I++T+R G R
Sbjct: 71 AYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTR 130
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D E + GRTA+E+Y DYM+SFR ++F G+I +I VGLGP GELRYP
Sbjct: 131 NKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRYP 190
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW++PGIGEFQCYDKYL A GH W P +AG YN P TGFF+
Sbjct: 191 SYPQSQGWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL-PDDAGKYNDVPESTGFFK 249
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS L++HGD++ AN AF G ++ K+SGIHWWYK +HA
Sbjct: 250 SNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHA 309
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN ++RDGY PIA ML +H LNFTC+E+R +Q D A + P+ LV QV
Sbjct: 310 AELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSD---AKSGPQELVQQV 366
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKPL----NDPDGRHLSAFTYLRLSPVLT 523
L+ W I VA ENALP YD YN+I+ NA+P N P + TYLRLS L
Sbjct: 367 LSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLSDDLL 426
Query: 524 DGHNFIEFERFVKRMHGE 541
NF F++FV +MH +
Sbjct: 427 QKSNFNIFKKFVLKMHAD 444
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/441 (51%), Positives = 295/441 (66%), Gaps = 9/441 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV +YVMLPLG+++ + D E + ++LK +K+ DGVMVD WWGI+EA P+ Y+WS
Sbjct: 12 YVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS 71
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
YR LFQ+V++ LK+Q +MSFH+CGGNVGD V IP+PQW+++IG NP+I++T+R G R
Sbjct: 72 AYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNR 131
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E L+ G+D +R+ +GRTA+E+Y D+M SFR +F G I +IEVG G GELRYP
Sbjct: 132 NQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYP 191
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP GW +PGIGEFQCYDKY++ +A + G+ W AG+YN TP +T FFR
Sbjct: 192 SYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFR 251
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
G Y + G+FFL WYS LI HGD+V AN F G I+AK+SGIHWWY SHA
Sbjct: 252 PNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHA 311
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAGFYN + RDGY PIA ML +H LNFTC+E+R +Q EA + P+ LV QV
Sbjct: 312 AELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPA---EAKSAPQELVQQV 368
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLT 523
L++ W I VA ENALP YD YN++L +P LN P +S TYLRLS L
Sbjct: 369 LSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGLTYLRLSDDLL 428
Query: 524 DGHNFIEFERFVKRMHGEAVP 544
NF F++FVK+MH + P
Sbjct: 429 QTDNFELFKKFVKKMHADLDP 449
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 291/436 (66%), Gaps = 10/436 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 5 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 64
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 65 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 124
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR +F G+I +IEVGLGP GELRYP
Sbjct: 125 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYP 184
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP HGW +PGIGEF CYDKYL AA A GH W P +AG YN TP T FFR
Sbjct: 185 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW-EFPNDAGQYNDTPERTQFFR 243
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
D G Y S GRFFL WYS LI HGDR+ AN F G ++ K++G+HWWYK SHA
Sbjct: 244 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPSHA 303
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN +RDGY IA MLK+H ++NFTC E+R +Q P+A++ PE LV QV
Sbjct: 304 AELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQP---PDAMSAPEELVQQV 360
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLT 523
L+A W + V+ ENALP YD YN IL NA+P + P L FTYLRLS L
Sbjct: 361 LSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 420
Query: 524 DGHNFIEFERFVKRMH 539
+G N++ F+ FV RMH
Sbjct: 421 EGQNYVNFKTFVDRMH 436
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/436 (53%), Positives = 288/436 (66%), Gaps = 10/436 (2%)
Query: 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS 169
YV VYVMLPL + +N + L QL+ L VDGVMVD WWG+VE P+ Y+WS
Sbjct: 9 YVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWS 68
Query: 170 GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229
Y++LF++V++ LKLQ +MSFH+CGGNVGD V+IP+PQWV ++G +P+I++TD G R
Sbjct: 69 AYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTR 128
Query: 230 NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYP 289
N E LT G+D + + GR+AV++Y DYM SFR EF G+I +IEVGLGP GE+RYP
Sbjct: 129 NIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYP 188
Query: 290 TYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFR 349
+YP HGW +PGIGEF CYDKYL AA A GH W P + G YN TP T FFR
Sbjct: 189 SYPQSHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF-PNDVGQYNDTPERTQFFR 247
Query: 350 DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHA 407
D G Y S GRFFL WYS LI HGDR+ AN F G ++ K+SGIHWWYK SHA
Sbjct: 248 DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHA 307
Query: 408 AELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467
AELTAG+YN +RDGY IA MLK+H ++NFTC E+R +Q +A++ PE LV QV
Sbjct: 308 AELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSS---QAMSAPEELVQQV 364
Query: 468 LNAAWDVSILVASENALPCYDREGYNKILENAKP----LNDPDGRHLSAFTYLRLSPVLT 523
L+A W + VA ENALP YD YN IL NA+P + P L FTYLRLS L
Sbjct: 365 LSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 424
Query: 524 DGHNFIEFERFVKRMH 539
+G N+ F+ FV RMH
Sbjct: 425 EGQNYANFKTFVDRMH 440
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 182 bits (462), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 203/447 (45%), Gaps = 55/447 (12%)
Query: 115 VMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRL 174
VM PL I+ D QL+ LK+ V + D WWG VE+ ++WS Y+
Sbjct: 10 VMGPLAKIN------DWGSFKKQLQTLKNNGVYAITTDVWWGYVESAGDNQFDWSYYKTY 63
Query: 175 FQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECL 234
V+E LK ++S H+CGGNVGDD +IPLP W+ G + E+ F D G NSE L
Sbjct: 64 ANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDESGYANSEAL 122
Query: 235 T--WGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYP 292
+ W G+ E+Y + +F II +I + GP GELRYP+Y
Sbjct: 123 SPLW------SGTGKQYDELYASFAENFAG------YKSIIPKIYLSGGPSGELRYPSYY 170
Query: 293 AKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR-GHL-----FWARGPGNAGSYNSTPHETG 346
GW YPG G+FQ Y + + A + G L W + N G
Sbjct: 171 PAAGWSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDG 230
Query: 347 FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFE---GTCISAKLSGIHWWYKT 403
F+ +GG Y+S YG+ FL+WY VL H + A A+ F+ G I AK+SG+HW
Sbjct: 231 FYTNGG-YNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNN 289
Query: 404 AS--HAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDF--PEALAD 459
+ H E G+Y+ Y + K + L FTC+E+ ++ P L D
Sbjct: 290 PAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSLPSTLVD 343
Query: 460 PEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLS 519
V + NA + + ENALP G+ KI E G H FT LR++
Sbjct: 344 ---TVSSIANAK---GVRLNGENALPT-GGSGFQKIEEKITKF----GYH--GFTLLRIN 390
Query: 520 PVL-TDGHNFIEFERFVKRMHGEAVPD 545
++ DG E F + + +A PD
Sbjct: 391 NLVNNDGSPTGELSGFKQYIISKAKPD 417
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 206/446 (46%), Gaps = 58/446 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K +MVD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAIMVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+IE+ GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKLSGIHWWYK--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQ 449
AK++G+HW Y T H AE AG+ + Y+ + K + +NFTC+E+
Sbjct: 286 AKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEMTDKGS 339
Query: 450 HEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRH 509
+ ++ + P+ LV + A + I++ ENAL + E Y ++ E A N
Sbjct: 340 YPEY----SMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------ 389
Query: 510 LSAFTYLRLSPVLTDGHNFIEFERFV 535
+ FT LR V+ + +F+ +
Sbjct: 390 FAGFTLLRYQDVMYNNSLMGKFKDLL 415
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 204/446 (45%), Gaps = 58/446 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+IE+ GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIELSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKLSGIHWWYK--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQ 449
AK++G+HW Y T H AE AG+ + Y+ + K + + FTC+E+
Sbjct: 286 AKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---D 336
Query: 450 HEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRH 509
+PE + P+ LV + A + I++ ENAL + E Y ++ E A N
Sbjct: 337 KGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------ 389
Query: 510 LSAFTYLRLSPVLTDGHNFIEFERFV 535
+ FT LR V+ + +F+ +
Sbjct: 390 FAGFTLLRYQDVMYNNSLMGKFKDLL 415
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 203/446 (45%), Gaps = 58/446 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKLSGIHWWYK--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQ 449
AK++G+HW Y T H AE AG+ + Y+ + K + + FTC+E+
Sbjct: 286 AKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---D 336
Query: 450 HEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRH 509
+PE + P+ LV + A + I++ ENAL + E Y ++ E A N
Sbjct: 337 KGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------ 389
Query: 510 LSAFTYLRLSPVLTDGHNFIEFERFV 535
+ FT LR V+ + +F+ +
Sbjct: 390 FAGFTLLRYQDVMYNNSLMGKFKDLL 415
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 203/446 (45%), Gaps = 58/446 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP GELRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIFLSGGPAGELRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKLSGIHWWYK--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQ 449
AK++G+HW Y T H AE AG+ + Y+ + K + + FTC+E+
Sbjct: 286 AKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---D 336
Query: 450 HEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRH 509
+PE + P+ LV + A + I++ ENAL + E Y ++ E A N
Sbjct: 337 KGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------ 389
Query: 510 LSAFTYLRLSPVLTDGHNFIEFERFV 535
+ FT LR V+ + +F+ +
Sbjct: 390 FAGFTLLRYQDVMYNNSLMGKFKDLL 415
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 202/446 (45%), Gaps = 58/446 (13%)
Query: 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW 168
P Y+M PL I E+ + E N L+ K + VD WWG +E + Q +++
Sbjct: 9 PDYKAYLMAPLKKI---PEVTNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDF 65
Query: 169 SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGR 228
S +R Q V+ +K+ ++S H+CGGNVGDD ++P+P WV +++ +YF G
Sbjct: 66 SYAQRFAQSVKNAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWN-QKSDDSLYFKSETGT 124
Query: 229 RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288
N E L L + Y + +F + +IA+I + GP G LRY
Sbjct: 125 VNKETL-------NPLASDVIRKEYGELYTAFAAAMKPY--KDVIAKIYLSGGPAGALRY 175
Query: 289 PTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNST------- 341
P+Y G YP G+FQ Y ++ A+++ L+ G+ N
Sbjct: 176 PSYTTSDGTGYPSRGKFQAYTEF--------AKSKFRLWVLNKYGSLNEVNKAWGTKLIS 227
Query: 342 -----PHETG--FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTC---IS 391
P G F +G Y S YG+ +L WY +L +H + LA+ AF+ T I
Sbjct: 228 ELAILPPSDGEQFLMNG--YLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIG 285
Query: 392 AKLSGIHWWYK--TASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQ 449
AK++G+HW Y T H AE AG+ + Y+ + K + + FTC+E+
Sbjct: 286 AKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMT---D 336
Query: 450 HEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDGRH 509
+PE + P+ LV + A + I++ ENAL + E Y ++ E A N
Sbjct: 337 KGSYPE-YSMPKTLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN------ 389
Query: 510 LSAFTYLRLSPVLTDGHNFIEFERFV 535
+ FT LR V+ + +F+ +
Sbjct: 390 FAGFTLLRYQDVMYNNSLMGKFKDLL 415
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D R++ FD S G++ EI G ++Y +
Sbjct: 808 KCCSWSADGARIMVAAKNKIFLFDIHTS-----------GLLGEIHTGHH--STIQYCDF 854
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
++ + ++ C + + S SK A+ RGHL W G
Sbjct: 855 SPQNHLAVVALSQY-CVELWNTDSRSKVADCRGHLSWVHG 893
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 LVDPEILVNQLKILKSINV-DGVMVDCWWGIVEAHTPQVYNWSGY 171
LVDPE+ ++L+ LK NV D V +D I+E Q+ +GY
Sbjct: 75 LVDPEVFFHELEQLKDFNVKDRVGIDYRCAIIEEKHKQLDRTNGY 119
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 802 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 848
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
+ ++ C + + + S K A+ RGHL W G
Sbjct: 849 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHG 887
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 232 ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTY 291
+C +W D ++++ + FD S G++AEI G ++Y +
Sbjct: 809 KCCSWSADGDKIIVAAKNKVLLFDIHTS-----------GLLAEIHTGHH--STIQYCDF 855
Query: 292 PAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARG 331
+ ++ C + + + S K A+ RGHL W G
Sbjct: 856 SPYDHLAVIALSQY-CVELWNIDSRLKVADCRGHLSWVHG 894
>pdb|1PRN|A Chain A, Refined Structure Of Porin From Rhodopseudomonas Blastica
And Comparison With The Porin From Rhodobacter
Capsulatus
Length = 289
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|1BH3|A Chain A, E1m, A116k Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|3PRN|A Chain A, E1m, A104w Mutant Of Rh. Blastica Porin
Length = 289
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|5PRN|A Chain A, E1m, Y96w, S119w Mutant Of Rh. Blastica Porin
Length = 289
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|2PRN|A Chain A, Rhodopseudomonas Blastica Porin, Triple Mutant E1m, E99w,
A116w
Length = 289
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|6PRN|A Chain A, E1m, K50a, R52a Mutant Of Rh. Blastica Porin
Length = 289
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|8PRN|A Chain A, E1m, K50a, R52a, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|7PRN|A Chain A, E1m, D97a, E99a Mutant Of Rh. Blastica Porin
Length = 289
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 359 GRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
G LNWY L GD+V N AF T + A +S I
Sbjct: 206 GTVGLNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 244
>pdb|1H6S|1 Chain 1, Asymmetric Conductivity Of Engineered Proteins
Length = 307
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 363 LNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397
LNWY L GD+V N AF T + A +S I
Sbjct: 228 LNWYDNGLSTAGDQVTLYGNYAFGATTVRAYVSDI 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,764,121
Number of Sequences: 62578
Number of extensions: 852189
Number of successful extensions: 1981
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 42
length of query: 562
length of database: 14,973,337
effective HSP length: 104
effective length of query: 458
effective length of database: 8,465,225
effective search space: 3877073050
effective search space used: 3877073050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)