Query 008542
Match_columns 562
No_of_seqs 144 out of 205
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 13:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02905 beta-amylase 100.0 1E-201 3E-206 1602.0 49.6 504 42-545 182-699 (702)
2 PLN02705 beta-amylase 100.0 2E-195 5E-200 1550.0 47.8 465 79-545 214-679 (681)
3 PLN02801 beta-amylase 100.0 3E-193 6E-198 1516.5 46.8 453 106-562 11-471 (517)
4 PLN02803 beta-amylase 100.0 1E-189 2E-194 1494.6 45.9 431 106-543 81-515 (548)
5 PLN00197 beta-amylase; Provisi 100.0 5E-189 1E-193 1492.9 46.3 437 103-543 98-541 (573)
6 PLN02161 beta-amylase 100.0 8E-187 2E-191 1466.8 45.3 432 104-542 85-531 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 2E-166 4E-171 1290.6 28.0 390 114-534 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.8 1.4E-18 3E-23 179.2 11.5 217 130-397 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.2 7.9E-11 1.7E-15 131.8 12.6 155 129-330 27-195 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.7 4.4E-08 9.6E-13 101.1 9.3 119 129-278 21-146 (319)
11 PLN03059 beta-galactosidase; P 98.3 4.3E-06 9.4E-11 96.1 11.6 147 129-324 56-213 (840)
12 TIGR03356 BGL beta-galactosida 97.6 0.00017 3.7E-09 77.5 9.0 110 129-278 51-164 (427)
13 PF00150 Cellulase: Cellulase 97.3 0.0013 2.9E-08 63.6 9.2 127 132-270 21-165 (281)
14 PF00232 Glyco_hydro_1: Glycos 97.2 0.0009 1.9E-08 72.2 8.2 101 129-269 55-159 (455)
15 KOG0496 Beta-galactosidase [Ca 96.9 0.0028 6.1E-08 71.6 9.0 141 129-281 46-203 (649)
16 PRK09852 cryptic 6-phospho-bet 96.7 0.0071 1.5E-07 66.4 9.6 110 129-278 68-183 (474)
17 PF02638 DUF187: Glycosyl hydr 96.6 0.18 3.8E-06 52.6 18.5 230 128-440 15-258 (311)
18 PRK15014 6-phospho-beta-glucos 96.5 0.011 2.5E-07 64.8 9.2 111 129-279 66-182 (477)
19 PF14871 GHL6: Hypothetical gl 96.2 0.076 1.7E-06 49.3 11.6 111 136-269 4-124 (132)
20 PRK13511 6-phospho-beta-galact 96.2 0.019 4.1E-07 62.8 8.8 109 129-278 51-163 (469)
21 smart00633 Glyco_10 Glycosyl h 96.0 0.037 8E-07 55.3 9.1 46 155-211 3-48 (254)
22 TIGR01233 lacG 6-phospho-beta- 95.9 0.034 7.3E-07 61.0 9.1 109 129-278 50-162 (467)
23 PLN02849 beta-glucosidase 95.8 0.038 8.3E-07 61.2 9.3 111 129-278 76-190 (503)
24 PLN02814 beta-glucosidase 95.8 0.039 8.4E-07 61.2 9.3 110 129-278 74-188 (504)
25 PLN02998 beta-glucosidase 95.7 0.042 9.2E-07 60.8 8.9 111 129-278 79-193 (497)
26 PRK09589 celA 6-phospho-beta-g 95.5 0.053 1.1E-06 59.7 8.7 111 129-278 64-179 (476)
27 PRK09593 arb 6-phospho-beta-gl 95.3 0.069 1.5E-06 58.8 8.8 111 129-278 70-185 (478)
28 COG2723 BglB Beta-glucosidase/ 94.4 0.48 1E-05 52.5 12.3 146 129-322 56-206 (460)
29 PF00331 Glyco_hydro_10: Glyco 93.6 0.14 3.1E-06 53.2 6.3 234 137-475 26-273 (320)
30 PF01229 Glyco_hydro_39: Glyco 92.9 0.27 5.8E-06 53.9 7.3 102 131-269 38-150 (486)
31 cd03465 URO-D_like The URO-D _ 92.2 0.99 2.1E-05 45.9 9.9 117 134-264 170-297 (330)
32 PF14488 DUF4434: Domain of un 89.9 1.1 2.5E-05 42.9 7.3 59 129-191 17-85 (166)
33 PF07745 Glyco_hydro_53: Glyco 89.5 0.68 1.5E-05 49.2 6.0 54 135-193 27-80 (332)
34 PRK10785 maltodextrin glucosid 87.3 13 0.00028 42.3 14.5 157 130-324 177-364 (598)
35 cd00465 URO-D_CIMS_like The UR 87.0 1.1 2.4E-05 45.1 5.4 61 133-197 145-210 (306)
36 PRK02412 aroD 3-dehydroquinate 86.7 6.2 0.00013 40.1 10.6 123 124-286 86-211 (253)
37 PRK11572 copper homeostasis pr 85.6 3 6.6E-05 43.0 7.7 70 110-191 51-124 (248)
38 PF03659 Glyco_hydro_71: Glyco 85.1 2.2 4.8E-05 46.1 6.9 55 130-193 15-69 (386)
39 PF00128 Alpha-amylase: Alpha 85.0 2.3 4.9E-05 41.3 6.3 64 130-196 2-80 (316)
40 PF10566 Glyco_hydro_97: Glyco 84.7 1.2 2.6E-05 46.3 4.5 106 104-237 80-186 (273)
41 PF03932 CutC: CutC family; I 84.3 1.7 3.6E-05 43.4 5.1 67 108-185 48-117 (201)
42 PF01487 DHquinase_I: Type I 3 84.2 13 0.00029 36.3 11.3 122 121-286 63-188 (224)
43 TIGR01093 aroD 3-dehydroquinat 84.1 10 0.00022 37.7 10.5 121 125-286 70-193 (228)
44 PRK01060 endonuclease IV; Prov 83.8 2 4.4E-05 42.7 5.5 58 116-185 1-63 (281)
45 cd06592 GH31_glucosidase_KIAA1 83.5 13 0.00029 38.4 11.5 83 129-227 27-116 (303)
46 PHA00442 host recBCD nuclease 82.6 2.2 4.7E-05 35.1 4.2 27 136-181 30-56 (59)
47 TIGR01463 mtaA_cmuA methyltran 82.5 2.2 4.9E-05 44.1 5.4 58 135-196 183-243 (340)
48 cd00502 DHQase_I Type I 3-dehy 79.9 22 0.00048 35.0 11.1 120 124-286 67-188 (225)
49 TIGR02104 pulA_typeI pullulana 79.7 18 0.00038 41.2 11.6 65 131-195 163-256 (605)
50 cd03308 CmuA_CmuC_like CmuA_Cm 79.6 3.1 6.7E-05 44.4 5.4 82 111-196 173-278 (378)
51 smart00642 Aamy Alpha-amylase 78.0 9.2 0.0002 36.5 7.5 68 129-196 16-97 (166)
52 PRK13111 trpA tryptophan synth 77.8 9.7 0.00021 39.1 8.1 89 109-228 88-177 (258)
53 PLN02361 alpha-amylase 77.0 7.8 0.00017 42.3 7.6 67 130-199 27-107 (401)
54 cd06593 GH31_xylosidase_YicI Y 76.4 14 0.0003 38.0 8.9 88 128-229 20-114 (308)
55 cd03311 CIMS_C_terminal_like C 76.3 5.2 0.00011 41.4 5.8 95 132-228 155-252 (332)
56 PF02065 Melibiase: Melibiase; 76.2 11 0.00023 41.2 8.3 79 129-211 55-144 (394)
57 cd04724 Tryptophan_synthase_al 75.8 17 0.00037 36.5 9.1 63 110-191 76-138 (242)
58 PRK13209 L-xylulose 5-phosphat 74.1 6.8 0.00015 39.0 5.8 67 117-188 8-76 (283)
59 TIGR00433 bioB biotin syntheta 73.6 8.4 0.00018 38.8 6.4 55 135-191 123-180 (296)
60 PF01261 AP_endonuc_2: Xylose 72.7 3.5 7.6E-05 37.9 3.2 46 138-188 1-46 (213)
61 TIGR00542 hxl6Piso_put hexulos 72.1 7.6 0.00016 38.9 5.6 55 131-188 15-71 (279)
62 PRK10150 beta-D-glucuronidase; 71.9 73 0.0016 36.1 13.7 47 129-189 310-356 (604)
63 TIGR01515 branching_enzym alph 71.2 8.6 0.00019 43.8 6.4 56 130-191 154-228 (613)
64 TIGR02402 trehalose_TreZ malto 70.9 8.5 0.00018 43.3 6.2 61 130-195 109-186 (542)
65 PF08821 CGGC: CGGC domain; I 70.3 15 0.00032 33.4 6.4 56 131-192 51-107 (107)
66 PRK09875 putative hydrolase; P 69.9 1.3E+02 0.0027 31.8 14.1 68 124-211 26-94 (292)
67 PLN02591 tryptophan synthase 69.0 24 0.00052 36.3 8.5 89 109-228 77-166 (250)
68 PF01055 Glyco_hydro_31: Glyco 68.8 16 0.00034 39.3 7.4 85 129-229 40-134 (441)
69 PRK09856 fructoselysine 3-epim 68.7 12 0.00027 37.0 6.2 51 133-190 14-68 (275)
70 cd03307 Mta_CmuA_like MtaA_Cmu 68.5 9.3 0.0002 39.5 5.5 55 136-196 175-232 (326)
71 PRK10658 putative alpha-glucos 65.3 47 0.001 38.7 10.7 86 130-229 281-373 (665)
72 PRK12313 glycogen branching en 64.7 14 0.00031 42.1 6.4 58 128-191 166-242 (633)
73 COG3142 CutC Uncharacterized p 64.6 17 0.00038 37.5 6.4 75 109-195 50-128 (241)
74 PRK06252 methylcobalamin:coenz 64.4 7.6 0.00016 40.1 3.9 56 135-196 183-241 (339)
75 COG3693 XynA Beta-1,4-xylanase 64.4 4.7 0.0001 43.4 2.4 202 148-448 59-264 (345)
76 PRK13210 putative L-xylulose 5 64.3 17 0.00037 36.0 6.2 53 132-188 16-71 (284)
77 KOG0626 Beta-glucosidase, lact 62.1 23 0.00049 40.4 7.2 71 130-212 89-164 (524)
78 PRK08508 biotin synthase; Prov 61.3 49 0.0011 34.0 9.0 53 129-187 40-93 (279)
79 COG2730 BglC Endoglucanase [Ca 60.8 50 0.0011 35.8 9.4 104 135-278 76-187 (407)
80 COG1649 Uncharacterized protei 60.7 77 0.0017 35.3 10.8 127 127-269 59-199 (418)
81 PLN02229 alpha-galactosidase 60.7 21 0.00045 39.7 6.5 70 129-199 77-160 (427)
82 PRK09989 hypothetical protein; 60.2 22 0.00047 35.3 6.1 42 133-186 16-57 (258)
83 cd03309 CmuC_like CmuC_like. P 60.0 10 0.00023 39.9 4.0 49 144-196 168-222 (321)
84 PF00290 Trp_syntA: Tryptophan 59.9 35 0.00076 35.4 7.7 91 107-228 84-175 (259)
85 PLN02808 alpha-galactosidase 59.6 17 0.00036 39.9 5.6 58 129-186 46-114 (386)
86 TIGR03234 OH-pyruv-isom hydrox 59.4 21 0.00045 35.1 5.8 42 133-186 15-56 (254)
87 PRK10933 trehalose-6-phosphate 59.3 19 0.00042 40.7 6.2 64 129-195 30-107 (551)
88 COG3867 Arabinogalactan endo-1 58.7 23 0.00049 38.4 6.2 58 134-193 65-126 (403)
89 CHL00200 trpA tryptophan synth 58.5 45 0.00097 34.5 8.2 91 109-230 90-181 (263)
90 PRK13398 3-deoxy-7-phosphohept 57.8 41 0.00089 34.9 7.8 69 119-192 28-99 (266)
91 PLN02389 biotin synthase 57.7 20 0.00043 38.8 5.8 46 134-185 177-229 (379)
92 PRK04302 triosephosphate isome 56.7 25 0.00055 34.7 5.9 47 136-192 76-122 (223)
93 PF01791 DeoC: DeoC/LacD famil 56.7 13 0.00029 36.7 4.0 53 135-188 79-131 (236)
94 PRK09441 cytoplasmic alpha-amy 56.4 27 0.00059 38.4 6.6 67 130-196 20-108 (479)
95 TIGR02403 trehalose_treC alpha 56.1 29 0.00063 39.0 6.9 65 129-195 24-101 (543)
96 PF13653 GDPD_2: Glycerophosph 56.0 10 0.00023 27.4 2.2 18 135-152 10-27 (30)
97 TIGR02102 pullulan_Gpos pullul 55.5 23 0.0005 43.6 6.4 62 130-191 478-577 (1111)
98 cd00717 URO-D Uroporphyrinogen 55.5 20 0.00043 37.2 5.1 74 137-226 182-260 (335)
99 PF01026 TatD_DNase: TatD rela 55.2 86 0.0019 31.4 9.4 47 133-192 15-62 (255)
100 TIGR02456 treS_nterm trehalose 54.6 36 0.00079 38.1 7.3 65 129-196 25-103 (539)
101 PRK09997 hydroxypyruvate isome 53.4 26 0.00057 34.7 5.4 41 133-185 16-56 (258)
102 TIGR01464 hemE uroporphyrinoge 52.6 25 0.00055 36.5 5.4 73 138-226 186-263 (338)
103 PF01208 URO-D: Uroporphyrinog 52.3 21 0.00046 36.8 4.7 110 137-261 187-307 (343)
104 PRK12595 bifunctional 3-deoxy- 50.1 56 0.0012 35.4 7.6 72 112-192 119-190 (360)
105 cd06604 GH31_glucosidase_II_Ma 49.8 1.7E+02 0.0037 30.8 11.0 85 128-228 20-113 (339)
106 PF05706 CDKN3: Cyclin-depende 49.5 8.8 0.00019 37.7 1.4 47 131-185 57-103 (168)
107 PLN00196 alpha-amylase; Provis 49.3 53 0.0012 36.2 7.4 64 130-196 42-119 (428)
108 PRK07360 FO synthase subunit 2 49.0 17 0.00036 38.9 3.5 53 134-191 162-223 (371)
109 PLN02692 alpha-galactosidase 48.9 31 0.00066 38.3 5.5 57 129-185 70-137 (412)
110 PRK09505 malS alpha-amylase; R 48.8 38 0.00083 39.6 6.5 62 130-191 228-314 (683)
111 PRK00115 hemE uroporphyrinogen 48.7 30 0.00065 36.3 5.2 75 136-226 190-269 (346)
112 PF02836 Glyco_hydro_2_C: Glyc 48.6 62 0.0014 32.9 7.4 50 128-191 32-81 (298)
113 PRK05222 5-methyltetrahydropte 47.9 27 0.00059 41.1 5.2 82 132-224 581-667 (758)
114 PLN02433 uroporphyrinogen deca 47.9 34 0.00074 36.0 5.5 76 137-226 184-262 (345)
115 PLN02877 alpha-amylase/limit d 47.4 33 0.00071 41.8 5.8 63 133-195 374-493 (970)
116 TIGR02631 xylA_Arthro xylose i 47.3 23 0.00049 38.4 4.2 54 130-188 30-87 (382)
117 PRK03906 mannonate dehydratase 47.1 29 0.00063 37.9 5.0 51 137-191 15-65 (385)
118 cd06565 GH20_GcnA-like Glycosy 47.0 1.9E+02 0.004 30.3 10.6 133 127-267 12-177 (301)
119 cd01299 Met_dep_hydrolase_A Me 46.8 57 0.0012 33.3 6.8 64 128-195 116-182 (342)
120 PRK14706 glycogen branching en 46.7 43 0.00094 38.8 6.5 61 126-191 161-239 (639)
121 TIGR00695 uxuA mannonate dehyd 46.7 33 0.00072 37.8 5.3 51 137-191 15-65 (394)
122 PF10566 Glyco_hydro_97: Glyco 46.6 56 0.0012 34.3 6.8 63 130-194 30-96 (273)
123 cd06599 GH31_glycosidase_Aec37 46.1 1E+02 0.0022 32.3 8.5 86 131-228 28-120 (317)
124 PRK07094 biotin synthase; Prov 45.3 41 0.00089 34.6 5.5 56 135-191 129-187 (323)
125 cd06602 GH31_MGAM_SI_GAA This 45.1 2.1E+02 0.0046 30.4 10.8 91 128-229 20-119 (339)
126 PRK14511 maltooligosyl trehalo 44.6 82 0.0018 38.2 8.4 66 130-196 18-96 (879)
127 TIGR03551 F420_cofH 7,8-dideme 44.6 19 0.00041 37.9 3.0 58 134-191 140-201 (343)
128 cd00958 DhnA Class I fructose- 44.4 48 0.001 32.6 5.6 65 130-200 74-138 (235)
129 TIGR03699 mena_SCO4550 menaqui 44.1 21 0.00046 37.2 3.3 53 135-191 143-203 (340)
130 PRK13125 trpA tryptophan synth 43.9 70 0.0015 32.2 6.8 64 110-192 74-137 (244)
131 cd01310 TatD_DNAse TatD like p 42.8 2E+02 0.0042 27.7 9.4 47 133-192 16-62 (251)
132 PRK12858 tagatose 1,6-diphosph 42.0 60 0.0013 35.0 6.3 56 132-187 106-161 (340)
133 PRK05402 glycogen branching en 42.0 61 0.0013 37.9 6.8 59 128-191 261-337 (726)
134 TIGR02884 spore_pdaA delta-lac 41.7 55 0.0012 32.4 5.6 82 424-521 142-223 (224)
135 PRK08508 biotin synthase; Prov 41.7 33 0.00072 35.2 4.2 51 135-191 102-159 (279)
136 cd07944 DRE_TIM_HOA_like 4-hyd 41.5 1.2E+02 0.0025 31.2 8.1 77 135-231 85-166 (266)
137 PRK09936 hypothetical protein; 41.5 50 0.0011 35.2 5.5 55 130-191 36-94 (296)
138 PRK04326 methionine synthase; 41.5 50 0.0011 34.2 5.5 78 132-226 161-239 (330)
139 TIGR03849 arch_ComA phosphosul 41.3 57 0.0012 33.7 5.7 52 131-190 70-121 (237)
140 smart00854 PGA_cap Bacterial c 41.0 73 0.0016 31.6 6.4 56 130-192 158-213 (239)
141 TIGR00423 radical SAM domain p 40.1 30 0.00066 35.8 3.7 56 134-189 106-165 (309)
142 PLN02960 alpha-amylase 39.7 81 0.0017 38.3 7.4 56 129-191 413-486 (897)
143 TIGR00262 trpA tryptophan synt 39.5 68 0.0015 32.9 6.0 63 110-191 87-149 (256)
144 cd02742 GH20_hexosaminidase Be 38.9 4.3E+02 0.0094 27.5 11.8 132 126-267 10-183 (303)
145 PLN02475 5-methyltetrahydropte 38.8 53 0.0012 39.0 5.7 84 132-226 586-674 (766)
146 PRK08883 ribulose-phosphate 3- 38.0 1.9E+02 0.0041 29.1 8.8 110 130-258 10-127 (220)
147 PRK15108 biotin synthase; Prov 37.9 3.7E+02 0.008 28.7 11.3 55 130-191 77-131 (345)
148 PRK06256 biotin synthase; Vali 37.9 36 0.00077 35.4 3.8 46 135-186 152-204 (336)
149 PRK15452 putative protease; Pr 37.4 35 0.00075 37.9 3.8 41 108-153 57-97 (443)
150 PRK13753 dihydropteroate synth 37.3 4E+02 0.0087 28.2 11.3 102 121-243 14-122 (279)
151 PF05226 CHASE2: CHASE2 domain 37.0 4E+02 0.0087 27.1 11.1 56 130-192 62-117 (310)
152 PRK08445 hypothetical protein; 36.9 41 0.00088 35.9 4.1 58 134-191 143-204 (348)
153 PRK08195 4-hyroxy-2-oxovalerat 36.7 90 0.002 33.3 6.6 90 136-264 92-186 (337)
154 PF02126 PTE: Phosphotriestera 36.2 93 0.002 32.9 6.5 63 130-211 36-98 (308)
155 TIGR03700 mena_SCO4494 putativ 36.1 38 0.00082 35.9 3.7 58 134-191 149-210 (351)
156 TIGR02529 EutJ ethanolamine ut 35.8 94 0.002 31.2 6.3 64 115-190 24-96 (239)
157 PF01717 Meth_synt_2: Cobalami 35.5 75 0.0016 33.0 5.7 86 132-229 154-245 (324)
158 PLN02540 methylenetetrahydrofo 35.3 86 0.0019 36.2 6.5 74 132-216 153-234 (565)
159 PF09184 PPP4R2: PPP4R2; Inte 35.0 9.3 0.0002 40.1 -1.0 31 511-541 96-127 (288)
160 TIGR03586 PseI pseudaminic aci 34.4 89 0.0019 33.5 6.1 70 112-185 1-93 (327)
161 TIGR02103 pullul_strch alpha-1 34.4 53 0.0011 39.8 4.8 25 134-158 288-314 (898)
162 PRK09993 C-lysozyme inhibitor; 33.7 29 0.00064 33.8 2.2 28 223-250 107-135 (153)
163 COG1082 IolE Sugar phosphate i 33.7 71 0.0015 31.2 4.9 49 131-186 14-62 (274)
164 PRK00957 methionine synthase; 32.9 1.6E+02 0.0035 30.3 7.6 80 132-229 144-224 (305)
165 PRK15108 biotin synthase; Prov 32.9 68 0.0015 34.2 5.0 45 135-185 136-187 (345)
166 cd00951 KDGDH 5-dehydro-4-deox 32.8 2.2E+02 0.0048 29.3 8.5 113 108-246 67-182 (289)
167 PF04187 DUF399: Protein of un 32.8 31 0.00067 34.3 2.3 20 166-185 86-105 (213)
168 PRK06520 5-methyltetrahydropte 32.6 77 0.0017 34.1 5.3 67 132-199 170-247 (368)
169 PF02679 ComA: (2R)-phospho-3- 32.6 61 0.0013 33.6 4.4 89 108-213 65-153 (244)
170 cd06591 GH31_xylosidase_XylS X 32.5 1.8E+02 0.0038 30.5 7.9 87 129-230 21-115 (319)
171 smart00518 AP2Ec AP endonuclea 32.2 1.2E+02 0.0025 30.2 6.2 51 133-185 11-61 (273)
172 TIGR03217 4OH_2_O_val_ald 4-hy 31.9 1.3E+02 0.0029 32.0 6.9 92 135-265 90-186 (333)
173 cd07381 MPP_CapA CapA and rela 31.5 1.6E+02 0.0035 29.0 7.0 56 130-192 160-215 (239)
174 COG1619 LdcA Uncharacterized p 31.5 1.3E+02 0.0028 32.3 6.7 93 121-222 15-107 (313)
175 PRK12568 glycogen branching en 31.3 1.1E+02 0.0025 36.3 6.8 59 128-191 265-341 (730)
176 PF13200 DUF4015: Putative gly 30.4 6.2E+02 0.014 27.3 11.5 127 128-290 9-150 (316)
177 PLN02447 1,4-alpha-glucan-bran 30.3 1E+02 0.0022 36.9 6.1 63 127-194 245-326 (758)
178 cd02809 alpha_hydroxyacid_oxid 30.2 4.3E+02 0.0093 27.4 10.1 130 130-269 127-287 (299)
179 COG1523 PulA Type II secretory 30.2 92 0.002 36.8 5.8 99 96-207 173-303 (697)
180 PRK08673 3-deoxy-7-phosphohept 30.1 1.3E+02 0.0029 32.4 6.5 67 119-192 94-165 (335)
181 PRK12677 xylose isomerase; Pro 30.0 1.1E+02 0.0025 33.2 6.1 49 133-186 32-84 (384)
182 cd08627 PI-PLCc_gamma1 Catalyt 29.9 45 0.00098 34.3 2.9 31 125-156 23-53 (229)
183 cd00019 AP2Ec AP endonuclease 29.7 1.5E+02 0.0033 29.6 6.6 52 132-185 10-62 (279)
184 cd06597 GH31_transferase_CtsY 29.7 2.4E+02 0.0053 30.0 8.4 63 128-192 20-106 (340)
185 COG2352 Ppc Phosphoenolpyruvat 29.5 47 0.001 40.0 3.3 67 128-201 532-612 (910)
186 cd06600 GH31_MGAM-like This fa 29.5 5.3E+02 0.011 27.1 10.7 83 128-228 20-113 (317)
187 TIGR02401 trehalose_TreY malto 29.3 1.9E+02 0.0042 34.9 8.2 65 130-195 14-91 (825)
188 PF05378 Hydant_A_N: Hydantoin 29.2 1.1E+02 0.0024 29.6 5.3 45 130-182 132-176 (176)
189 cd08560 GDPD_EcGlpQ_like_1 Gly 28.7 68 0.0015 34.6 4.2 49 134-186 247-295 (356)
190 TIGR01371 met_syn_B12ind 5-met 28.3 90 0.002 37.0 5.4 83 132-224 575-661 (750)
191 PRK02227 hypothetical protein; 28.1 76 0.0017 32.9 4.2 46 136-185 135-183 (238)
192 PRK06233 hypothetical protein; 27.9 1.2E+02 0.0026 32.7 5.8 67 132-199 171-249 (372)
193 COG4130 Predicted sugar epimer 27.9 63 0.0014 33.7 3.5 74 104-182 90-164 (272)
194 smart00481 POLIIIAc DNA polyme 27.9 1.8E+02 0.0038 23.1 5.5 44 133-187 16-59 (67)
195 COG0620 MetE Methionine syntha 27.6 1.4E+02 0.003 32.1 6.1 65 131-201 157-227 (330)
196 PF04476 DUF556: Protein of un 27.4 76 0.0017 32.9 4.0 44 138-185 137-183 (235)
197 cd08592 PI-PLCc_gamma Catalyti 27.3 52 0.0011 33.8 2.9 31 125-156 23-53 (229)
198 cd07491 Peptidases_S8_7 Peptid 27.3 2.8E+02 0.006 28.0 8.0 72 129-209 86-159 (247)
199 TIGR00677 fadh2_euk methylenet 27.0 1.8E+02 0.0039 30.3 6.7 71 134-216 147-226 (281)
200 COG0407 HemE Uroporphyrinogen- 26.7 1.1E+02 0.0025 33.2 5.4 58 136-196 193-251 (352)
201 TIGR02026 BchE magnesium-proto 26.5 1.7E+02 0.0037 32.6 6.8 51 136-191 288-345 (497)
202 TIGR03056 bchO_mg_che_rel puta 26.5 2.4E+02 0.0053 26.7 7.1 80 392-476 11-94 (278)
203 TIGR00010 hydrolase, TatD fami 26.5 1.7E+02 0.0036 28.2 6.0 46 134-192 17-62 (252)
204 TIGR00419 tim triosephosphate 26.0 1.4E+02 0.0031 30.0 5.6 45 137-191 73-117 (205)
205 PF03786 UxuA: D-mannonate deh 25.9 43 0.00094 36.4 2.1 51 137-191 16-67 (351)
206 cd03319 L-Ala-DL-Glu_epimerase 25.9 73 0.0016 32.8 3.6 58 126-199 235-293 (316)
207 cd07947 DRE_TIM_Re_CS Clostrid 25.7 3.7E+02 0.0081 28.1 8.7 84 135-229 77-176 (279)
208 COG2876 AroA 3-deoxy-D-arabino 25.4 1.4E+02 0.0031 31.8 5.6 54 130-183 227-282 (286)
209 PLN03231 putative alpha-galact 25.2 1.1E+02 0.0023 33.5 4.9 56 130-185 16-102 (357)
210 TIGR02100 glgX_debranch glycog 25.1 1.2E+02 0.0025 35.7 5.5 65 131-195 181-272 (688)
211 PRK05926 hypothetical protein; 25.1 71 0.0015 34.6 3.5 58 134-191 168-229 (370)
212 cd06589 GH31 The enzymes of gl 25.0 1.8E+02 0.0039 29.5 6.2 71 128-215 20-99 (265)
213 PF01136 Peptidase_U32: Peptid 24.9 68 0.0015 31.3 3.1 22 132-153 2-23 (233)
214 cd03310 CIMS_like CIMS - Cobal 24.8 2.7E+02 0.006 28.4 7.5 59 132-196 151-211 (321)
215 PRK12331 oxaloacetate decarbox 24.7 1.7E+02 0.0036 32.8 6.4 52 130-191 94-145 (448)
216 PF01183 Glyco_hydro_25: Glyco 24.7 1.9E+02 0.004 27.4 5.9 109 138-269 12-120 (181)
217 PF13380 CoA_binding_2: CoA bi 24.6 1.6E+02 0.0035 26.5 5.2 44 128-185 62-105 (116)
218 cd00598 GH18_chitinase-like Th 24.2 2.7E+02 0.0058 26.2 6.8 46 132-181 90-136 (210)
219 cd00530 PTE Phosphotriesterase 24.2 1.9E+02 0.0041 29.0 6.2 56 128-193 28-83 (293)
220 cd08212 RuBisCO_large_I Ribulo 24.2 1.4E+02 0.0031 33.6 5.7 52 130-192 224-275 (450)
221 COG2342 Predicted extracellula 24.2 1.4E+02 0.003 32.1 5.3 64 132-198 126-197 (300)
222 COG1099 Predicted metal-depend 24.2 57 0.0012 34.0 2.5 55 136-192 15-73 (254)
223 PTZ00445 p36-lilke protein; Pr 24.1 1.7E+02 0.0038 30.1 5.8 58 128-185 25-94 (219)
224 PRK13397 3-deoxy-7-phosphohept 23.8 2.4E+02 0.0053 29.4 6.9 64 124-192 21-87 (250)
225 PRK00111 hypothetical protein; 23.8 1.3E+02 0.0027 30.1 4.7 46 251-303 128-174 (180)
226 TIGR00539 hemN_rel putative ox 23.4 1.8E+02 0.0039 30.8 6.0 52 135-191 100-159 (360)
227 COG1312 UxuA D-mannonate dehyd 23.4 82 0.0018 34.5 3.5 51 137-191 15-65 (362)
228 PRK14705 glycogen branching en 23.4 1.4E+02 0.0031 37.5 6.0 54 131-191 764-835 (1224)
229 TIGR03569 NeuB_NnaB N-acetylne 23.3 87 0.0019 33.6 3.7 54 132-185 16-92 (329)
230 PRK03705 glycogen debranching 23.2 1E+02 0.0022 36.0 4.5 51 137-191 184-264 (658)
231 cd06564 GH20_DspB_LnbB-like Gl 23.2 8.2E+02 0.018 25.7 10.8 117 125-269 10-155 (326)
232 TIGR00559 pdxJ pyridoxine 5'-p 23.1 93 0.002 32.3 3.7 51 135-185 134-185 (237)
233 PRK13210 putative L-xylulose 5 23.1 1.5E+02 0.0033 29.3 5.2 59 132-192 94-154 (284)
234 COG1856 Uncharacterized homolo 22.4 90 0.002 32.8 3.4 52 135-188 100-155 (275)
235 COG1060 ThiH Thiamine biosynth 22.3 1.3E+02 0.0027 32.9 4.7 59 133-191 159-221 (370)
236 PF01261 AP_endonuc_2: Xylose 22.2 90 0.0019 28.7 3.2 60 131-192 70-133 (213)
237 PRK09240 thiH thiamine biosynt 21.9 1.8E+02 0.004 31.2 5.9 46 135-185 163-219 (371)
238 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.9 2.6E+02 0.0056 28.8 6.7 52 130-191 89-140 (275)
239 PLN02417 dihydrodipicolinate s 21.7 3.6E+02 0.0079 27.7 7.7 98 129-246 80-180 (280)
240 PRK04175 rpl7ae 50S ribosomal 21.7 2.2E+02 0.0048 26.3 5.6 44 421-478 33-76 (122)
241 PLN02784 alpha-amylase 21.5 2.4E+02 0.0051 34.5 7.1 63 131-196 520-596 (894)
242 cd04871 ACT_PSP_2 ACT domains 21.5 1E+02 0.0022 26.4 3.1 36 439-481 48-83 (84)
243 PRK09121 5-methyltetrahydropte 21.4 1.5E+02 0.0032 31.7 4.9 60 132-199 156-216 (339)
244 TIGR03212 uraD_N-term-dom puta 21.3 95 0.002 32.7 3.5 28 416-443 72-99 (297)
245 COG0036 Rpe Pentose-5-phosphat 21.2 4.2E+02 0.0091 27.4 7.9 109 130-258 14-130 (220)
246 PRK05799 coproporphyrinogen II 21.2 1.9E+02 0.0041 30.6 5.7 49 136-189 100-156 (374)
247 TIGR01748 rhaA L-rhamnose isom 21.1 1.2E+03 0.027 26.3 12.5 171 126-372 63-247 (414)
248 COG0159 TrpA Tryptophan syntha 21.1 5.2E+02 0.011 27.4 8.7 92 109-231 93-185 (265)
249 PLN02389 biotin synthase 21.1 7.3E+02 0.016 27.2 10.2 54 129-185 116-169 (379)
250 cd03174 DRE_TIM_metallolyase D 21.1 2.4E+02 0.0052 27.7 6.1 58 135-194 77-141 (265)
251 COG1809 (2R)-phospho-3-sulfola 21.1 1.8E+02 0.0039 30.5 5.2 47 131-185 89-135 (258)
252 cd06413 GH25_muramidase_1 Unch 21.0 2.5E+02 0.0055 27.0 6.1 51 137-194 16-66 (191)
253 PF00834 Ribul_P_3_epim: Ribul 20.9 90 0.0019 31.1 3.1 25 130-154 10-34 (201)
254 TIGR02351 thiH thiazole biosyn 20.7 2.8E+02 0.0061 29.7 6.9 46 135-185 162-218 (366)
255 TIGR02764 spore_ybaN_pdaB poly 20.7 1.7E+02 0.0038 27.7 4.9 79 424-521 110-190 (191)
256 PRK00042 tpiA triosephosphate 20.6 1.5E+02 0.0032 30.7 4.6 45 137-191 78-126 (250)
257 PRK08005 epimerase; Validated 20.6 1.1E+02 0.0023 30.9 3.6 143 130-323 11-161 (210)
258 smart00729 Elp3 Elongator prot 20.5 3.1E+02 0.0067 24.8 6.3 48 135-189 100-157 (216)
259 PF14587 Glyco_hydr_30_2: O-Gl 20.4 4.1E+02 0.0088 29.6 8.1 82 161-276 93-177 (384)
260 TIGR01949 AroFGH_arch predicte 20.4 1.4E+02 0.0031 30.1 4.4 52 133-188 91-142 (258)
261 PRK10426 alpha-glucosidase; Pr 20.3 4.3E+02 0.0093 30.8 8.7 87 131-229 220-317 (635)
262 TIGR03006 pepcterm_polyde poly 20.1 1.5E+02 0.0032 30.7 4.5 24 421-444 28-51 (265)
No 1
>PLN02905 beta-amylase
Probab=100.00 E-value=1.3e-201 Score=1601.98 Aligned_cols=504 Identities=75% Similarity=1.340 Sum_probs=485.8
Q ss_pred cccceecccccccccccc-------------cccchhhhcc-cccccccCCCCCCCCcccccchhhccCCCCCCCcCCCC
Q 008542 42 HSLTYCNVTYCNACRFKR-------------TQFRTLAAIG-EWEEETEDDPHGGDSVDAADDMKAVHLPPKLPERDFAG 107 (562)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (562)
-|.+|+|++++|+|++|+ .++..+++|. ++...+++..++++|++|++++++.|+++..+++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 261 (702)
T PLN02905 182 VSSGYRSSVEYNACRMKGVFVPASSPYDVSPSQSSELVVVMGDRGSQNENHGLIGGSVDAINSKQILDIPPKLTERDFAG 261 (702)
T ss_pred cccccccccccchhhhccccccCCCccccccCCCCcceeEeecccccccccCCccCcccccchhhhhhhhcccccccccC
Confidence 478999999999999999 4445565554 78899999999999999996666669999999999999
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
+++||||||||||+|+++|+++++++|+++|++||++|||||||||||||||+++|++|||++|++||+|||++||||||
T Consensus 262 ~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 262 TPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred CCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhh
Q 008542 188 VMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF 267 (562)
Q Consensus 188 vmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~ 267 (562)
|||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|++|
T Consensus 342 VMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 342 VMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred EEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceEEEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCc
Q 008542 268 FVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGF 347 (562)
Q Consensus 268 ~~~~vI~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t~F 347 (562)
|+++||+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||+||||||+||++|++|+|
T Consensus 422 l~~g~I~eI~VGLGPaGELRYPSYp~s~GW~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgF 501 (702)
T PLN02905 422 FEDGVISMVEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGF 501 (702)
T ss_pred hcCCceEEEEeccCCCccccCCCCcCcCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCCeeeEEecceeecCCCCCChhhhhccccCCCCCCChHHHH
Q 008542 348 FRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIA 427 (562)
Q Consensus 348 F~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia 427 (562)
|+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+||||||||||+|+||||||||||||+++||||+||+
T Consensus 502 F~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa 581 (702)
T PLN02905 502 FCDGGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEGTCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIA 581 (702)
T ss_pred CCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhcCCCCCCCC
Q 008542 428 AMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLNDPDG 507 (562)
Q Consensus 428 ~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~~~~~~~~~~~ 507 (562)
+|||||+|+|+||||||+|++||...++++|+||+||+||+++||++||+|+|||||++||.++|+||++|++++++++.
T Consensus 582 ~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~ 661 (702)
T PLN02905 582 SMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDG 661 (702)
T ss_pred HHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCcc
Confidence 99999999999999999999996434589999999999999999999999999999999999999999999998877777
Q ss_pred CcceeeEEeecCccccCCCChhHHHHHHHHhcCCCCCC
Q 008542 508 RHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAVPD 545 (562)
Q Consensus 508 ~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~ 545 (562)
.+|++||||||++.||+++||++|++|||+||+++..+
T Consensus 662 ~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~~~~~ 699 (702)
T PLN02905 662 RHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGEAVLD 699 (702)
T ss_pred CceeeeEEecCchhhcCcchHHHHHHHHHHhccccccc
Confidence 78999999999999999999999999999999987543
No 2
>PLN02705 beta-amylase
Probab=100.00 E-value=2.4e-195 Score=1550.02 Aligned_cols=465 Identities=60% Similarity=1.104 Sum_probs=454.9
Q ss_pred CCCCCCcccc-cchhhccCCCCCCCcCCCCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeee
Q 008542 79 PHGGDSVDAA-DDMKAVHLPPKLPERDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGI 157 (562)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGi 157 (562)
..+++|++|+ +||+++++++..++++++++++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGi 293 (681)
T PLN02705 214 TSPITSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGI 293 (681)
T ss_pred cCccccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeE
Confidence 4455999999 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecc
Q 008542 158 VEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWG 237 (562)
Q Consensus 158 VE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~ 237 (562)
||+++|++|||++|++||+|||++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||
T Consensus 294 VE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg 373 (681)
T PLN02705 294 VEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWS 373 (681)
T ss_pred eecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHH
Q 008542 238 IDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLS 317 (562)
Q Consensus 238 ~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~ 317 (562)
+|++|||+||||+|+|+|||+|||++|++||++++|+||+|||||||||||||||+..||+||||||||||||||+++|+
T Consensus 374 ~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk 453 (681)
T PLN02705 374 IDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLR 453 (681)
T ss_pred cCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEeccCCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCCeeeEEecce
Q 008542 318 KAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397 (562)
Q Consensus 318 ~~a~~~G~~~WG~gP~nag~Yn~~P~~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~GI 397 (562)
++|+++||++||+||||||+||+.|++|+||+++|+|+|+||||||+|||++||+||||||++|+.+|++++|+||||||
T Consensus 454 ~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVaGI 533 (681)
T PLN02705 454 KAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIPAV 533 (681)
T ss_pred HHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCe
Q 008542 398 HWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSIL 477 (562)
Q Consensus 398 HWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~ 477 (562)
||||+|+||||||||||||+++||||+||++|||||+|+|+|||+||+|++++ +.+++|+||+||+||+++||++||+
T Consensus 534 HWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~--~~~a~s~PE~LV~QV~~aA~~~Gv~ 611 (681)
T PLN02705 534 YWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFVCSGLQMSPNE--NDEALADPEGLSWQVLNSAWDRGLT 611 (681)
T ss_pred cccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEEeccccccCCC--CCccCCCHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999973 5688999999999999999999999
Q ss_pred eeccccCCCCCcchHHHHHHhcCCCCCCCCCcceeeEEeecCccccCCCChhHHHHHHHHhcCCCCCC
Q 008542 478 VASENALPCYDREGYNKILENAKPLNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAVPD 545 (562)
Q Consensus 478 l~GENAL~~~d~~~~~qi~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~ 545 (562)
|+|||||++||.++|+||++|++++++++..+|++||||||++.||+++||++|++|||+||+++++.
T Consensus 612 vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~ 679 (681)
T PLN02705 612 VAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDIRDK 679 (681)
T ss_pred eeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhccccccc
Confidence 99999999999999999999999988777778999999999999999999999999999999988654
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=2.6e-193 Score=1516.55 Aligned_cols=453 Identities=54% Similarity=0.974 Sum_probs=439.4
Q ss_pred CCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 106 ~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
...++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 11 ~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 11 MLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred ccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHh
Q 008542 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (562)
Q Consensus 186 qvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~ 265 (562)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 91 q~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 170 (517)
T PLN02801 91 QAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMA 170 (517)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCC
Q 008542 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHET 345 (562)
Q Consensus 266 ~~~~~~vI~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t 345 (562)
+|+++++|+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||. |||||+||+.|++|
T Consensus 171 ~~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t 249 (517)
T PLN02801 171 DFLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDT 249 (517)
T ss_pred HhccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred CccccCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCC--eeeEEecceeecCCCCCChhhhhccccCCCCCCCh
Q 008542 346 GFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGT--CISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGY 423 (562)
Q Consensus 346 ~FF~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~--~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY 423 (562)
+||+++|+|+|+||||||+|||++||+||||||++|+++|+++ +|+||||||||||+|+||||||||||||+++||||
T Consensus 250 ~FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY 329 (517)
T PLN02801 250 GFFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGY 329 (517)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccch
Confidence 9999999999999999999999999999999999999999875 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhcCCCC
Q 008542 424 APIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLN 503 (562)
Q Consensus 424 ~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~~~~~~~ 503 (562)
.|||+|||||+|+|+||||||+|++|+ ++++|+||+||+||+++||++||+|+|||||+|||+++|+||++|++++.
T Consensus 330 ~pIa~m~~rh~~~l~FTClEM~D~eq~---~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~ 406 (517)
T PLN02801 330 RPIARMLSRHYGILNFTCLEMRDTEQP---AEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNG 406 (517)
T ss_pred HHHHHHHHHcCCeEEEeecccccCCCC---cccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhcc
Confidence 999999999999999999999999994 68999999999999999999999999999999999999999999998753
Q ss_pred -C---CCCCcceeeEEeecCccccCCCChhHHHHHHHHhcCCC--CCCcccccccccccccccCC
Q 008542 504 -D---PDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEA--VPDLRVYTTEGNKEECSKNQ 562 (562)
Q Consensus 504 -~---~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~--~~~~~~~~~~~~~~~~~~~~ 562 (562)
+ +...+|++||||||++.||+++||++|++|||+||+++ ++++++|.|...|+|+||+.
T Consensus 407 ~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~p~~~~~~~ 471 (517)
T PLN02801 407 VNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCPDPAKYGHEIVPLERSNPE 471 (517)
T ss_pred CCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCCChhhcCCCCCccccCCCc
Confidence 2 22356999999999999999999999999999999977 88999999999999999984
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=1e-189 Score=1494.63 Aligned_cols=431 Identities=53% Similarity=0.977 Sum_probs=419.3
Q ss_pred CCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 106 AGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 106 ~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
...++||||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHh
Q 008542 186 QVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (562)
Q Consensus 186 qvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~ 265 (562)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEEEEEeeccCCCCCCCCCCCCCCC-CcCCCCcccccccHHHHHHHHHHHHHhCCcccCC-CCCCCCCCCCCCC
Q 008542 266 EFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GPGNAGSYNSTPH 343 (562)
Q Consensus 266 ~~~~~~vI~eI~VGLGP~GELRYPSyp~~~g-W~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~-gP~nag~Yn~~P~ 343 (562)
+|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 79999999999999999999999888 9999999999999999999999999999999995 8999999999999
Q ss_pred CCCccccCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCC--eeeEEecceeecCCCCCChhhhhccccCCCCCC
Q 008542 344 ETGFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGT--CISAKLSGIHWWYKTASHAAELTAGFYNPSNRD 421 (562)
Q Consensus 344 ~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~--~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rd 421 (562)
+|+||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+|+|||||||||||||++||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rd 399 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHD 399 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcc
Confidence 999999999999999999999999999999999999999999864 899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhcCC
Q 008542 422 GYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP 501 (562)
Q Consensus 422 GY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~~~~~ 501 (562)
||+||++|||||+|+|+||||||+|++|| ++++|+||+||+||+++||++||+|+|||||++||.++|+||++++++
T Consensus 400 GY~~Ia~mf~rh~~~l~FTClEM~D~eqp---~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~ 476 (548)
T PLN02803 400 GYLPIARMFSKHGVVLNFTCMEMRDGEQP---EHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRS 476 (548)
T ss_pred cHHHHHHHHHHcCCeEEEEecCcccCCCC---ccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcc
Confidence 99999999999999999999999999984 689999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcceeeEEeecCccccCCCChhHHHHHHHHhcCCCC
Q 008542 502 LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAV 543 (562)
Q Consensus 502 ~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 543 (562)
+. ..++++||||||++.||+++||++|++|||+||++..
T Consensus 477 ~~---~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 515 (548)
T PLN02803 477 DS---GNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGR 515 (548)
T ss_pred cc---cCceeeeEEecCChHHcChhhHHHHHHHHHHhcCccc
Confidence 43 2369999999999999999999999999999998764
No 5
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=5.1e-189 Score=1492.92 Aligned_cols=437 Identities=49% Similarity=0.916 Sum_probs=421.5
Q ss_pred cCCCCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcC
Q 008542 103 RDFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (562)
Q Consensus 103 ~~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (562)
......++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||++|++||+|||++|
T Consensus 98 ~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~G 177 (573)
T PLN00197 98 GTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHG 177 (573)
T ss_pred cccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcC
Confidence 34445679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHH
Q 008542 183 LKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRV 262 (562)
Q Consensus 183 LKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~ 262 (562)
||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||+
T Consensus 178 LKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~ 257 (573)
T PLN00197 178 LKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRD 257 (573)
T ss_pred CeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCceEEEEEeeccCCCCCCCCCCCCCCC-CcCCCCcccccccHHHHHHHHHHHHHhCCcccCC-CCCCCCCCCC
Q 008542 263 EFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWAR-GPGNAGSYNS 340 (562)
Q Consensus 263 ~F~~~~~~~vI~eI~VGLGP~GELRYPSyp~~~g-W~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~-gP~nag~Yn~ 340 (562)
+|++|++ ++|+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ ||||||+||+
T Consensus 258 ~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~ 336 (573)
T PLN00197 258 NFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNN 336 (573)
T ss_pred HHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCC
Confidence 9999998 69999999999999999999999888 9999999999999999999999999999999995 8999999999
Q ss_pred CCCCCCccc-cCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCC--CeeeEEecceeecCCCCCChhhhhccccCC
Q 008542 341 TPHETGFFR-DGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--TCISAKLSGIHWWYKTASHAAELTAGFYNP 417 (562)
Q Consensus 341 ~P~~t~FF~-~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g--~~l~aKV~GIHWwY~t~SHaAELTAGyYNt 417 (562)
.|++|+||+ +||+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+|||||||||||||
T Consensus 337 ~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt 416 (573)
T PLN00197 337 WPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNT 416 (573)
T ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccC
Confidence 999999999 47899999999999999999999999999999999985 689999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHH
Q 008542 418 SNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILE 497 (562)
Q Consensus 418 ~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~ 497 (562)
++||||+||++|||||||+|+||||||+|++|| ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++
T Consensus 417 ~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp---~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~ 493 (573)
T PLN00197 417 RFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQP---QDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQ 493 (573)
T ss_pred CCcccHHHHHHHHHHcCCeEEEEecCcccCCCC---ccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHH
Confidence 999999999999999999999999999999984 68999999999999999999999999999999999999999999
Q ss_pred hcCCCCC--CCCCcceeeEEeecCccccCCCChhHHHHHHHHhcCCCC
Q 008542 498 NAKPLND--PDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEAV 543 (562)
Q Consensus 498 ~~~~~~~--~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~ 543 (562)
+++.+.+ +...++++||||||++.||+++||++|++|||+||++..
T Consensus 494 ~~~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~ 541 (573)
T PLN00197 494 ASSLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKD 541 (573)
T ss_pred hcccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCC
Confidence 9876542 234679999999999999999999999999999999874
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=7.9e-187 Score=1466.81 Aligned_cols=432 Identities=41% Similarity=0.776 Sum_probs=416.1
Q ss_pred CCCCCCCccEEEeeccceeeCCC----cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHH
Q 008542 104 DFAGTPYVPVYVMLPLGIIDMNC----ELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVR 179 (562)
Q Consensus 104 ~~~~~~~vpvyVMLPLd~V~~~~----~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr 179 (562)
.....++||||||||||+|+.++ +++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||
T Consensus 85 ~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 164 (531)
T PLN02161 85 VSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLIS 164 (531)
T ss_pred ccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 44556799999999999999764 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHH
Q 008542 180 ELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRS 259 (562)
Q Consensus 180 ~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~S 259 (562)
++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|
T Consensus 165 ~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 244 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLS 244 (531)
T ss_pred HcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCceEEEEEeeccCCCCCCCCCCCCCCC-CcCCCCcccccccHHHHHHHHHHHHHhCCcccC-CCCCCCCC
Q 008542 260 FRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWA-RGPGNAGS 337 (562)
Q Consensus 260 F~~~F~~~~~~~vI~eI~VGLGP~GELRYPSyp~~~g-W~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG-~gP~nag~ 337 (562)
||++|++|++ +||+||+|||||||||||||||+.+| |+||||||||||||||+++||++|+++||++|| .||||||.
T Consensus 245 Fr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~ 323 (531)
T PLN02161 245 FSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGC 323 (531)
T ss_pred HHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcc
Confidence 9999999997 79999999999999999999999876 999999999999999999999999999999999 58999999
Q ss_pred CCCCCCCCCcccc-CCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCC--------CeeeEEecceeecCCCCCChh
Q 008542 338 YNSTPHETGFFRD-GGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEG--------TCISAKLSGIHWWYKTASHAA 408 (562)
Q Consensus 338 Yn~~P~~t~FF~~-gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g--------~~l~aKV~GIHWwY~t~SHaA 408 (562)
||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|+||||||||||+|+||||
T Consensus 324 Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaA 403 (531)
T PLN02161 324 YNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPA 403 (531)
T ss_pred cCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchh
Confidence 9999999999997 5789999999999999999999999999999999963 789999999999999999999
Q ss_pred hhhccccCCCCCCChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCC
Q 008542 409 ELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYD 488 (562)
Q Consensus 409 ELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d 488 (562)
||||||||+++||||.|||+|||||+|+|+||||||+|.+|+ +++.|+||+||+||+++||++||+|+|||||+|||
T Consensus 404 ElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~---~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D 480 (531)
T PLN02161 404 ELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETP---EKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFD 480 (531)
T ss_pred hhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCC---ccccCCHHHHHHHHHHHHHHcCCceeecccccccC
Confidence 999999999999999999999999999999999999999984 68999999999999999999999999999999999
Q ss_pred cchHHHHHHhcCCCCCCCCCcceeeEEeecCccccCCCChhHHHHHHHHhcCCC
Q 008542 489 REGYNKILENAKPLNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERFVKRMHGEA 542 (562)
Q Consensus 489 ~~~~~qi~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~ 542 (562)
..+|+||++|++.. +..++.+||||||++.||+++||++|++|||+||+++
T Consensus 481 ~~~~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~ 531 (531)
T PLN02161 481 EMGLRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSADM 531 (531)
T ss_pred hhHHHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCCC
Confidence 99999999999642 2356999999999999999999999999999999874
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=1.9e-166 Score=1290.60 Aligned_cols=390 Identities=62% Similarity=1.143 Sum_probs=332.6
Q ss_pred EEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 114 YVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 114 yVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
|||||||+|+++++++ +|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999887764 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceE
Q 008542 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (562)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI 273 (562)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| |||+||| +|+|+|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHH------HhCCcccC-CCCCCCCCCCCCCCCCC
Q 008542 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAE------ARGHLFWA-RGPGNAGSYNSTPHETG 346 (562)
Q Consensus 274 ~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~------~~G~~~WG-~gP~nag~Yn~~P~~t~ 346 (562)
+||+|||||||||||||||+.+||+||||||||||||||+++||++|+ +++|++|| .+|+|+ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 999999999999999999999999999999999999999999999999 44589999 589998 999999999
Q ss_pred ccccCCcccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCC---eeeEEecceeecCC--CCCChhhhhccccCCCCCC
Q 008542 347 FFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGT---CISAKLSGIHWWYK--TASHAAELTAGFYNPSNRD 421 (562)
Q Consensus 347 FF~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~---~l~aKV~GIHWwY~--t~SHaAELTAGyYNt~~rd 421 (562)
||+++|+|+|+||||||+|||++|++||||||++|+.+|+++ +|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999987 89999999999999 88999999999999
Q ss_pred ChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhcCC
Q 008542 422 GYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKP 501 (562)
Q Consensus 422 GY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~~~~~ 501 (562)
|+||++|||||+|+|+||||||+|.+++ +..|+||+||+||+++|+++||+|+|||||++||+++|+||+++++.
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~----p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~ 375 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQ----PEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG 375 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGS----CGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCC----CCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc
Confidence 9999999999999999999999999542 23579999999999999999999999999999999999999999974
Q ss_pred CCCCCCCcceeeEEeecCccccCCCChhHHHHH
Q 008542 502 LNDPDGRHLSAFTYLRLSPVLTDGHNFIEFERF 534 (562)
Q Consensus 502 ~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 534 (562)
.++.+||||||++.||+++||++|++|
T Consensus 376 ------~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 ------YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp ------TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred ------cCCCCeEEEccChHhcCcccHHhccCC
Confidence 345679999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.77 E-value=1.4e-18 Score=179.17 Aligned_cols=217 Identities=18% Similarity=0.294 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEee-eeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCCh
Q 008542 130 DPEILVNQLKILKSINVDGVMVDC-WWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQ 208 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~ 208 (562)
+.+.|+++|+.||++|++-|.+.+ -|..+|+ .||+|||+.+++++++++++|||| ||++ .+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe----------ccccccc
Confidence 457999999999999999999865 5999999 799999999999999999999998 8888 5678999
Q ss_pred hHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCCCCC
Q 008542 209 WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRY 288 (562)
Q Consensus 209 WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLGP~GELRY 288 (562)
|+. +++||++.+|++|++...--.... -.-.+.|+++++.|.+++...+++
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~~g~~~~~--------~~~~p~yr~~~~~~~~~l~~~y~~------------------ 125 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRGFGSRQHY--------CPNSPAYREYARRFIRALAERYGD------------------ 125 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEECCCSTT---------HCCHHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred chh---hhcccccccCCCCCcCccCCcccc--------chhHHHHHHHHHHHHHHHHhhccc------------------
Confidence 998 789999999999986431111000 022789999999999999988773
Q ss_pred CCCCCCCCCcC---CCCcccccccHHHHHHHHHHHHHhC------CcccCCCC--CCCCCCCC--CCCCCCccccCCccc
Q 008542 289 PTYPAKHGWKY---PGIGEFQCYDKYLMKSLSKAAEARG------HLFWARGP--GNAGSYNS--TPHETGFFRDGGEYD 355 (562)
Q Consensus 289 PSyp~~~gW~~---PGiGEFQCYDky~~~~l~~~a~~~G------~~~WG~gP--~nag~Yn~--~P~~t~FF~~gG~w~ 355 (562)
+|...||+. ||.+ .||++.+++.|++++++|| |.+||+.- +....+.. .|..+....+.+
T Consensus 126 --~p~vi~~~i~NE~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~--- 198 (374)
T PF02449_consen 126 --HPAVIGWQIDNEPGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPA--- 198 (374)
T ss_dssp --TTTEEEEEECCSTTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HH---
T ss_pred --cceEEEEEeccccCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChH---
Confidence 344344443 3333 8999999999999999998 77999732 22233333 344444222211
Q ss_pred ccccchhHHHhHHHHHhHHHHHHHHHHhhcCCCeeeEEecce
Q 008542 356 SYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGI 397 (562)
Q Consensus 356 S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~GI 397 (562)
...+|...-+..+.+.-..+....+++-++.+|..+.-|.
T Consensus 199 --~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~ 238 (374)
T PF02449_consen 199 --QWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGS 238 (374)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccc
Confidence 1234555567788888888888888887888998888876
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=7.9e-11 Score=131.76 Aligned_cols=155 Identities=19% Similarity=0.350 Sum_probs=123.4
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE-eeeeeeeecCCCccccchhHHHH-HHHHHHcCCcEEEEEeeeccCCCCCCCCcCCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRL-FQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l-~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpL 206 (562)
.+++.|+.+|++||++|++.|++ .+-|+.+|+ ..|+|||++.++. ++++++.||++ ||++ | ++-..
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t-------~--P~g~~ 94 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT-------G--PTGAP 94 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec-------C--CCCCC
Confidence 36689999999999999999999 666999999 7999999999999 99999999999 9988 1 45679
Q ss_pred ChhHHhhhccCCCeeeeCCCCCccc----ceeecccCcccccCCCchhHHHHHHHHHHHHHHhhh-hcCc-eEEEEEeec
Q 008542 207 PQWVMEIGQNNPEIYFTDREGRRNS----ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEF-FVDG-IIAEIEVGL 280 (562)
Q Consensus 207 P~WV~e~g~~~pDI~~tDr~G~rn~----E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~-~~~~-vI~eI~VGL 280 (562)
|.|+. +++|+|+.+|..|.+.. |.++.- ...|+++.+...+..+++ ++++ -|...+|.-
T Consensus 95 P~Wl~---~~~PeiL~~~~~~~~~~~g~r~~~~~~------------~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn 159 (673)
T COG1874 95 PAWLA---KKYPEILAVDENGRVRSDGARENICPV------------SPVYREYLDRILQQIRERLYGNGPAVITWQNDN 159 (673)
T ss_pred chHHh---cCChhheEecCCCcccCCCcccccccc------------cHHHHHHHHHHHHHHHHHHhccCCceeEEEccC
Confidence 99999 89999999999987643 333332 347988888877777777 5421 133333333
Q ss_pred cCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhC------CcccCC
Q 008542 281 GPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG------HLFWAR 330 (562)
Q Consensus 281 GP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G------~~~WG~ 330 (562)
.|.|. -||++++++.|+.|+++++ |..|++
T Consensus 160 -----------------eY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t 195 (673)
T COG1874 160 -----------------EYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGT 195 (673)
T ss_pred -----------------ccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhh
Confidence 23443 4999999999999999998 778874
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.71 E-value=4.4e-08 Score=101.09 Aligned_cols=119 Identities=18% Similarity=0.378 Sum_probs=75.4
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchh---HHHHHHHHHHcCCcEEEEEee--eccCCCCCCCCc
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG---YRRLFQIVRELELKLQVVMSF--HECGGNVGDDVH 203 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~---Y~~l~~mvr~~GLKvqvvmsF--HqCGGNVGD~~~ 203 (562)
..++.|+..|++||++|++.|.+.|.|...|+ .||+|||++ .++++++|+++||+| |+.+ =.|+- -.+
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE----~~~ 93 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAE----WDN 93 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TT----BGG
T ss_pred CChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceeccc----ccc
Confidence 36899999999999999999999999999999 699999997 679999999999997 6766 22321 011
Q ss_pred CCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc--CceEEEEEe
Q 008542 204 IPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV--DGIIAEIEV 278 (562)
Q Consensus 204 IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~--~~vI~eI~V 278 (562)
=-||.||.. ++++.+... +.+ -++.-+.|++.+...+++++- .|.|.-|||
T Consensus 94 gG~P~Wl~~----~~~~~~R~~----~~~----------------~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 94 GGLPAWLLR----KPDIRLRTN----DPP----------------FLEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp GG--GGGGG----STTS-SSSS-----HH----------------HHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhhhc----ccccccccc----chh----------------HHHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 129999983 334433211 111 244556666677777777652 268888888
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.28 E-value=4.3e-06 Score=96.13 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=102.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHH---HHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRR---LFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~---l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
..++.|+.-|++||++|++.|.+-|.|..-|+ .||+|||++=+. .+++|++.||.|++=..=.-|+-=- .=-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~----~GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWN----FGG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeec----CCC
Confidence 37899999999999999999999999999999 699999998654 5788999999994433333332100 002
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc--------CceEEEEE
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV--------DGIIAEIE 277 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~--------~~vI~eI~ 277 (562)
||.|+. ++|+|.+. |--+.|.+.|+.|-++..+.+. .|-|.-+|
T Consensus 131 lP~WL~----~~~~i~~R------------------------s~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLK----YVPGIEFR------------------------TDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhh----cCCCcccc------------------------cCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 999997 34665432 3346777777777777766662 25677777
Q ss_pred eeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhC
Q 008542 278 VGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARG 324 (562)
Q Consensus 278 VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G 324 (562)
| |=-|=||.. .| ---|+.-++.|++.|++.|
T Consensus 183 I------ENEYGs~~~----~~------~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 I------ENEYGPVEW----EI------GAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred e------cccccceec----cc------CcchHHHHHHHHHHHHHcC
Confidence 6 333434421 11 1226666678888888887
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.64 E-value=0.00017 Score=77.46 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=86.4
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
.....++.+|+.||++|++.+.+.+=|..+|+.+++++| +..|+++++.++++||+..|.|. | ..
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------fd 118 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------WD 118 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------CC
Confidence 467899999999999999999999999999998788888 79999999999999999966664 2 35
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
+|.|+.+ +.|-.+. .-++.|.+|.+...++|.+...- -||.|..+
T Consensus 119 ~P~~l~~------------~gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 119 LPQALED------------RGGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred ccHHHHh------------cCCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 9999863 2233222 23688888888888888874320 25666654
No 13
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.27 E-value=0.0013 Score=63.57 Aligned_cols=127 Identities=11% Similarity=0.207 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeee-cCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeec----cCCCCCCCCc
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVE-AHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHE----CGGNVGDDVH 203 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE-~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq----CGGNVGD~~~ 203 (562)
...++.++.||++|++-|++.+.|...+ +..+. .--|..++++++.+++.||+| |+.+|. |.++-+....
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~~~~w~~~~~~~~~~ 98 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHNAPGWANGGDGYGNN 98 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEESTTCSSSTSTTTTH
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEeccCccccccccccccc
Confidence 4789999999999999999999995554 43333 346788999999999999999 899998 3333333333
Q ss_pred CCCChhHHh----hhccCCCeeeeCCCCCcccceeecccCcccccCCCc------hhHHHHHHHHHHHHHHhhhhcC
Q 008542 204 IPLPQWVME----IGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRT------AVEVYFDYMRSFRVEFNEFFVD 270 (562)
Q Consensus 204 IpLP~WV~e----~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRT------piq~Y~dfm~SF~~~F~~~~~~ 270 (562)
.....|+.+ ..+. |++.. --+.|-+=++|...+.. +.+.|.++++...++....-.+
T Consensus 99 ~~~~~~~~~~~~~la~~-----y~~~~-----~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~ 165 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKR-----YKDNP-----PVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN 165 (281)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTTTT-----TTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHhhhhhhccc-----cCCCC-----cEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc
Confidence 334445433 1221 11111 12344444777765543 4588999999999999887543
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.22 E-value=0.0009 Score=72.22 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=77.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Ccccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
.....++.+|+.||++|++...+.+=|..|+|.+ .+++| +..|+++++.++++|++..|.|.- .
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H------------~ 122 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH------------F 122 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES------------S
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee------------c
Confidence 4678999999999999999999999999999987 78888 999999999999999999666642 4
Q ss_pred CCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc
Q 008542 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~ 269 (562)
.||.|+.+.| |-.| |.-++.|.+|.+-..++|.+...
T Consensus 123 ~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 123 DLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp --BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBS
T ss_pred ccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcc
Confidence 6999998532 2222 33378888898888889888653
No 15
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.0028 Score=71.61 Aligned_cols=141 Identities=21% Similarity=0.427 Sum_probs=96.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHH---HHHHHcCCcEEEEEee--eccC-CCCCCCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF---QIVRELELKLQVVMSF--HECG-GNVGDDV 202 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~---~mvr~~GLKvqvvmsF--HqCG-GNVGD~~ 202 (562)
..++.|..-|+++|++|.++|.+-|+|..-|+ .||+||||+=.+|+ .+|++.||=| +|-. --|+ .|-|
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~G--- 119 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFG--- 119 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCC---
Confidence 36889999999999999999999999999999 79999999977765 5677888877 5543 1111 1222
Q ss_pred cCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCccc----ccCCC-------chhHHHHHHHHHHHHHHhhhhcCc
Q 008542 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKER----VLRGR-------TAVEVYFDYMRSFRVEFNEFFVDG 271 (562)
Q Consensus 203 ~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~p----vl~GR-------Tpiq~Y~dfm~SF~~~F~~~~~~~ 271 (562)
-||.|+. .-|.|.|...+.-.-.|-=.|.-=-+| +|..+ .--..|-.+-+.+++....+++..
T Consensus 120 --G~P~wL~----~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~ 193 (649)
T KOG0496|consen 120 --GLPWWLR----NVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWA 193 (649)
T ss_pred --Ccchhhh----hCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccc
Confidence 3897774 568888865544332222223322233 22110 112578999999999999999976
Q ss_pred eEEEEEeecc
Q 008542 272 IIAEIEVGLG 281 (562)
Q Consensus 272 vI~eI~VGLG 281 (562)
.+..+..+.|
T Consensus 194 a~m~~~l~~g 203 (649)
T KOG0496|consen 194 AVLATSLGTG 203 (649)
T ss_pred eEEEEecCCC
Confidence 6666666655
No 16
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.71 E-value=0.0071 Score=66.37 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=87.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
.....++.+++.||++|++...+.+=|..++|.+ +++-.++.|+++++-++++|++..|.|.-|
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~------------ 135 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF------------ 135 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC------------
Confidence 4678899999999999999999999999999965 478889999999999999999997777654
Q ss_pred CCChhHHhhhccCCCeeeeCC-CCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 205 PLPQWVMEIGQNNPEIYFTDR-EGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr-~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
.||.|+.+ + .|-. .|.-++.|.+|.+-..++|.+...- -||.|..+
T Consensus 136 ~~P~~l~~------------~~GGW~----------------~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 136 DVPMHLVT------------EYGSWR----------------NRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred CCCHHHHH------------hcCCCC----------------CHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 69999863 2 1221 1344788888888888888885431 14567653
No 17
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.61 E-value=0.18 Score=52.62 Aligned_cols=230 Identities=18% Similarity=0.194 Sum_probs=145.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeee-ee------eecCC------Ccc-ccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWW-GI------VEAHT------PQV-YNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWW-Gi------VE~~~------p~~-YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
+..++++++-|+.||++|++.|-++||+ |. +|+.+ +++ -.|.....+++.+++.||+|++=|-+--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3478899999999999999999999995 33 33321 111 1377899999999999999999884421
Q ss_pred cCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceE
Q 008542 194 CGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGII 273 (562)
Q Consensus 194 CGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI 273 (562)
-..+.+.. .-.-|.|+. .++|+...+...+.-+.-+|..+ .+.=++|+.+...++...++ |
T Consensus 95 ~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSHI-LKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhhh-hhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 11111111 112577765 45677666655554444567766 78889999999999988875 6
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCc
Q 008542 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGE 353 (562)
Q Consensus 274 ~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t~FF~~gG~ 353 (562)
..|.+= --|||.. . + -||.+..+.|++.- | ..|. ..|++.
T Consensus 156 DGIhlD-----dy~yp~~--~--~---------g~~~~~~~~y~~~~---g-----~~~~------~~~~d~-------- 195 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP--S--F---------GYDFPDVAAYEKYT---G-----KDPF------SSPEDD-------- 195 (311)
T ss_pred CeEEec-----ccccccc--c--C---------CCCCccHHHHHHhc---C-----cCCC------CCccch--------
Confidence 666643 2345421 1 1 24555566666531 1 0110 011110
Q ss_pred ccccccchhHHHhHHHHHhHHHHHHHHHHhhcCCCeeeEEecceeecCCCCCChhhhhccccCCCCCCChHHHHHHHHHc
Q 008542 354 YDSYYGRFFLNWYSQVLIDHGDRVFALANLAFEGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKH 433 (562)
Q Consensus 354 w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~~F~g~~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh 433 (562)
...+|=.+.+-+--.+|-...+++=+.+.+++=+.|+- |.+-.+=|.....-+++-
T Consensus 196 -------~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~-----------------~~~y~~~~qD~~~W~~~G 251 (311)
T PF02638_consen 196 -------AWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIW-----------------NSAYDDYYQDWRNWLKEG 251 (311)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecch-----------------hhhhhheeccHHHHHhcC
Confidence 17788888777777777777777767778877655542 133334577777777665
Q ss_pred CcEEEEe
Q 008542 434 GVALNFT 440 (562)
Q Consensus 434 ~~~l~FT 440 (562)
-++..++
T Consensus 252 ~iD~i~P 258 (311)
T PF02638_consen 252 YIDYIVP 258 (311)
T ss_pred CccEEEe
Confidence 5565555
No 18
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.46 E-value=0.011 Score=64.81 Aligned_cols=111 Identities=11% Similarity=0.170 Sum_probs=86.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC----CccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT----PQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
.....++.+++.||++|++...+.+=|..|+|.+ +++-.+..|+++++.++++|++..|-|.- .
T Consensus 66 D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H------------~ 133 (477)
T PRK15014 66 DFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH------------F 133 (477)
T ss_pred CcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC------------C
Confidence 4667899999999999999999999999999965 46778999999999999999998555542 4
Q ss_pred CCChhHHhhhccCCCeeeeCC-CCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEee
Q 008542 205 PLPQWVMEIGQNNPEIYFTDR-EGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEVG 279 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr-~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~-~~vI~eI~VG 279 (562)
.||.|+.+ + .|-.| |.-++.|.+|.+-..++|.+... =-||.|+.+-
T Consensus 134 dlP~~L~~------------~yGGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 134 EMPLHLVQ------------QYGSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred CCCHHHHH------------hcCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 79999963 2 12222 23378888888888888887543 0267777643
No 19
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.18 E-value=0.076 Score=49.25 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=74.2
Q ss_pred HHHHHHHHcCcceEEEeee--eee------eecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCC
Q 008542 136 NQLKILKSINVDGVMVDCW--WGI------VEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP 207 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVW--WGi------VE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP 207 (562)
+-++.||++||+.|++.+= +|. |-...|+- .-.-..++++.+++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4467899999999999442 332 21112332 36788999999999999999999983 34
Q ss_pred hhHHhhhccCCCeeeeCCCCC--cccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc
Q 008542 208 QWVMEIGQNNPEIYFTDREGR--RNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (562)
Q Consensus 208 ~WV~e~g~~~pDI~~tDr~G~--rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~ 269 (562)
.++. +++||=+..|++|+ +..+....+.-..++ -.-|+||+..-.+++-+.++
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILDRYD 124 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHHcCC
Confidence 4444 89999999999998 222322221111111 13488998888877766553
No 20
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.17 E-value=0.019 Score=62.84 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
......+.+++.||++|++.-...+=|..|+|.+++ +=-+..|++|++-++++|++-.|.|- ...
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~------------H~d 118 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH------------HFD 118 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------CCC
Confidence 567899999999999999999999999999998765 44578899999999999999855553 357
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~-~~vI~eI~V 278 (562)
||.|+.+ +.|-.|. .-++.|.+|.+-..++|.+ .. =-||.|..+
T Consensus 119 lP~~L~~------------~GGW~n~----------------~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 119 TPEALHS------------NGDWLNR----------------ENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CcHHHHH------------cCCCCCH----------------HHHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 9999963 2343333 3377888888888888877 54 124556543
No 21
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=95.97 E-value=0.037 Score=55.25 Aligned_cols=46 Identities=22% Similarity=0.488 Sum_probs=37.7
Q ss_pred eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHH
Q 008542 155 WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (562)
Q Consensus 155 WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~ 211 (562)
|+.+|+ .+|+|||+..+++++.++++|++++.-..+..+ ..|.|+.
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~ 48 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVF 48 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhh
Confidence 899998 799999999999999999999999653333211 3789986
No 22
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.88 E-value=0.034 Score=60.97 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=83.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc---cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
.....++.+++.||++|++.-...+=|..++|.+++++ -...|++|++-++++|++-.|-|- ...
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~------------H~d 117 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH------------HFD 117 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc------------CCC
Confidence 56789999999999999999999999999999887766 377899999999999999855553 357
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~-~~vI~eI~V 278 (562)
||.|+.+ +.|-.| |.-++.|.+|.+--.++|.+ .. =-||.|..+
T Consensus 118 lP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 118 TPEALHS------------NGDFLN----------------RENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred CcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 9999963 233332 33477788887777777776 32 125566543
No 23
>PLN02849 beta-glucosidase
Probab=95.82 E-value=0.038 Score=61.24 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=85.7
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
......+.+++.||++|++.-...+=|..|+|.+.++.| ...|+++++-++++|++-.|-|. ...
T Consensus 76 D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~------------H~d 143 (503)
T PLN02849 76 DGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF------------HYD 143 (503)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec------------CCC
Confidence 467899999999999999999999999999998766555 66899999999999999855553 357
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
||.|+.+. -.|-.| |.-++.|.+|.+--.++|.+..+- -||.|..+
T Consensus 144 lP~~L~~~-----------yGGW~n----------------r~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 144 HPQYLEDD-----------YGGWIN----------------RRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CcHHHHHh-----------cCCcCC----------------chHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 99999731 023222 344788889988888888885431 14557653
No 24
>PLN02814 beta-glucosidase
Probab=95.81 E-value=0.039 Score=61.22 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccc---hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW---SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW---s~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
.....++.+++.||++|++.-...+=|..|+|+++++.|- ..|++|++-++++|++-.|-|. .-.
T Consensus 74 D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~------------H~d 141 (504)
T PLN02814 74 DGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY------------HYD 141 (504)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec------------CCC
Confidence 4678999999999999999999999999999988777775 6799999999999999855553 357
Q ss_pred CChhHHhhhccCCCeeeeCC-CCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDR-EGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr-~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
||.|+.+ + .|-. .|.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 142 lP~~L~~------------~yGGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 142 LPQSLED------------EYGGWI----------------NRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCHHHHH------------hcCCcC----------------ChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 9999973 2 2222 2344788888888888888886541 14556653
No 25
>PLN02998 beta-glucosidase
Probab=95.66 E-value=0.042 Score=60.81 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
.....++.+++.||++|++.-...+=|..|+|++++.+| ...|+++++-++++|++-.|-|. ...
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~------------H~d 146 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH------------HFD 146 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec------------CCC
Confidence 467899999999999999999999999999998777665 67899999999999999855553 357
Q ss_pred CChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
||.|+.+. . .|-. .|.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 147 lP~~L~~~---y--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 147 LPQALEDE---Y--------GGWL----------------SQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCHHHHHh---h--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 99999731 0 2222 2344888999988888888885431 14556653
No 26
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.46 E-value=0.053 Score=59.65 Aligned_cols=111 Identities=13% Similarity=0.175 Sum_probs=84.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCC----ccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTP----QVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p----~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
.....++.+++.||++|++.-...+=|..|+|.+. ++=-...|++|++-++++|++-.|-|. | .
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H-----------~ 131 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H-----------F 131 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 46789999999999999999999999999999752 344578899999999999999866553 3 5
Q ss_pred CCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
.||.|+.+. -.|-.| |.-++.|.+|.+--.++|.+..+- -||.|..+
T Consensus 132 dlP~~L~~~-----------yGGW~n----------------~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 132 EMPYHLVTE-----------YGGWRN----------------RKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCHHHHHh-----------cCCcCC----------------hHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 799999631 022222 334788888888888888885431 25677654
No 27
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.27 E-value=0.069 Score=58.79 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=84.1
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-C---ccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-P---QVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p---~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
.....++.+++.||++|++.-...+=|..|+|.+ + ++=-...|++|++-++++|++-.|-|- | .
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H-----------~ 137 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H-----------F 137 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------c
Confidence 4678999999999999999999999999999975 3 334478899999999999999866553 3 5
Q ss_pred CCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEe
Q 008542 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEV 278 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V 278 (562)
.||+|+.+. -.|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 138 dlP~~L~~~-----------~GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 138 DCPMHLIEE-----------YGGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred CCCHHHHhh-----------cCCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 799999631 022222 333788888888888888885431 15667654
No 28
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=0.48 Score=52.52 Aligned_cols=146 Identities=18% Similarity=0.180 Sum_probs=101.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCc-ccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQ-VYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
......+.+++.+|++|++...+.+=|..+-|.+.+ ..| -.-|++||+-+.+.|++..|-|+ ..
T Consensus 56 d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~------------Hf 123 (460)
T COG2723 56 DFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY------------HF 123 (460)
T ss_pred chhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------cc
Confidence 357789999999999999999999999999996655 455 56699999999999999855553 36
Q ss_pred CCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcC-ceEEEEEeeccCC
Q 008542 205 PLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVD-GIIAEIEVGLGPC 283 (562)
Q Consensus 205 pLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~vI~eI~VGLGP~ 283 (562)
.+|.|+.+.. .|-. .|.-++.|..|.+--.++|.+..+- -|.-|+.|=+.
T Consensus 124 d~P~~L~~~y-----------gGW~----------------nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~-- 174 (460)
T COG2723 124 DLPLWLQKPY-----------GGWE----------------NRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE-- 174 (460)
T ss_pred CCcHHHhhcc-----------CCcc----------------CHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc--
Confidence 8999998432 2322 2455888888888888888776541 14556655433
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHH
Q 008542 284 GELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEA 322 (562)
Q Consensus 284 GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~ 322 (562)
++-..|-..|++..++-.=+-+--.+-++|++
T Consensus 175 -------~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 175 -------LGYLYGGHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred -------ccccccccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 11122334577776665444555555555555
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.58 E-value=0.14 Score=53.19 Aligned_cols=234 Identities=19% Similarity=0.297 Sum_probs=133.0
Q ss_pred HHHHHHHcCcceEEEe--eeeeeeecCCCccccchhHHHHHHHHHHcCCcEE--EEEeeeccCCCCCCCCcCCCChhHHh
Q 008542 137 QLKILKSINVDGVMVD--CWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ--VVMSFHECGGNVGDDVHIPLPQWVME 212 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq--vvmsFHqCGGNVGD~~~IpLP~WV~e 212 (562)
..+.+-....+.|+.. .=|+.+|+ .+|+|||+.-+++++.+++.|++++ +.+. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555555667777754 33999998 7999999999999999999999997 4443 42 37999984
Q ss_pred hhccCCCeeeeCCCCCcccceeecccCcccccCCCch--hHHHHHHHHHHHHHHhhhhcC-ceEEEEEe---eccCCC--
Q 008542 213 IGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTA--VEVYFDYMRSFRVEFNEFFVD-GIIAEIEV---GLGPCG-- 284 (562)
Q Consensus 213 ~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTp--iq~Y~dfm~SF~~~F~~~~~~-~vI~eI~V---GLGP~G-- 284 (562)
.... +| -+..++.|+.+.++....+++ |.|....| -+...|
T Consensus 93 ~~~~-------------------------------~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 93 LANG-------------------------------SPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp STTS-------------------------------SBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSS
T ss_pred ccCC-------------------------------CcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcc
Confidence 3110 11 246777788887877777775 45655544 233322
Q ss_pred -CCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCcccccccchhH
Q 008542 285 -ELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGEYDSYYGRFFL 363 (562)
Q Consensus 285 -ELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t~FF~~gG~w~S~YGkFFL 363 (562)
.||- ..| +--+| +.|....|+.+-+.. | ....|-+. |+....
T Consensus 142 ~~~r~------~~~-~~~lG-----~~yi~~aF~~A~~~~--------P-----------~a~L~~ND--y~~~~~---- 184 (320)
T PF00331_consen 142 GGLRD------SPW-YDALG-----PDYIADAFRAAREAD--------P-----------NAKLFYND--YNIESP---- 184 (320)
T ss_dssp SSBCT------SHH-HHHHT-----TCHHHHHHHHHHHHH--------T-----------TSEEEEEE--SSTTST----
T ss_pred ccccC------Chh-hhccc-----HhHHHHHHHHHHHhC--------C-----------CcEEEecc--ccccch----
Confidence 2222 111 11233 678888898877743 2 22233331 332222
Q ss_pred HHhHHHHHhHHHHHHHHHHhhc-CCCeeeEEecceeecCCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeec
Q 008542 364 NWYSQVLIDHGDRVFALANLAF-EGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCV 442 (562)
Q Consensus 364 ~WYS~~Li~HGdrVL~~A~~~F-~g~~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTCl 442 (562)
.+-++++.+.+.+= .|+||-+===--|+..... .+.....++.|+..|+.+++|=|
T Consensus 185 --------~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~ITEl 241 (320)
T PF00331_consen 185 --------AKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHITEL 241 (320)
T ss_dssp --------HHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEEEE
T ss_pred --------HHHHHHHHHHHHHHhCCCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEEee
Confidence 55677777776554 2455332100113332222 33466777778889999999999
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHhcC
Q 008542 443 ELRTVDQHEDFPEALADPEGLVWQVLNAAWDVS 475 (562)
Q Consensus 443 EM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~G 475 (562)
++.+...+. ..+....=.....+++.+|.++.
T Consensus 242 Dv~~~~~~~-~~~~~~~qA~~~~~~~~~~~~~~ 273 (320)
T PF00331_consen 242 DVRDDDNPP-DAEEEEAQAEYYRDFLTACFSHP 273 (320)
T ss_dssp EEESSSTTS-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eecCCCCCc-chHHHHHHHHHHHHHHHHHHhCC
Confidence 998776531 00000001234455666666655
No 30
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.89 E-value=0.27 Score=53.89 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHH-HcCcceEEEeeeeeee-------ec-CCCc--cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 131 PEILVNQLKILK-SINVDGVMVDCWWGIV-------EA-HTPQ--VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 131 ~~~~~~~L~~LK-~~GVdGV~vdVWWGiV-------E~-~~p~--~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
...++.+|+.++ ++|+.-|.+ ||+. .. .+++ .|||+..+++++.+.+.|||..+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 357889999997 699999875 4433 11 1233 399999999999999999999999999
Q ss_pred CCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc
Q 008542 200 DDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (562)
Q Consensus 200 D~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~ 269 (562)
-|.++.. .+.-.|. .+..++.- .-.+.+.|++++|..++.+.+|
T Consensus 107 ------~p~~~~~----~~~~~~~------~~~~~~pp----------~~~~~W~~lv~~~~~h~~~RYG 150 (486)
T PF01229_consen 107 ------MPMALAS----GYQTVFW------YKGNISPP----------KDYEKWRDLVRAFARHYIDRYG 150 (486)
T ss_dssp ------B-GGGBS----S--EETT------TTEE-S-B----------S-HHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhhcC----CCCcccc------ccCCcCCc----------ccHHHHHHHHHHHHHHHHhhcC
Confidence 5666641 1111111 11122211 2278999999999999999998
No 31
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=92.21 E-value=0.99 Score=45.92 Aligned_cols=117 Identities=16% Similarity=0.409 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhH
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 210 (562)
+...++++.++|+++|.++.-|+--.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 3455566777899999999988754322466555 999999999999998765 569995 432 344555
Q ss_pred HhhhccCCCeeeeCCCCC-----c---ccceeecccCcccccCCCchhHHHHHHHHHHHHHH
Q 008542 211 MEIGQNNPEIYFTDREGR-----R---NSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEF 264 (562)
Q Consensus 211 ~e~g~~~pDI~~tDr~G~-----r---n~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F 264 (562)
.+.+ .|++-.|..-. + .+-+|..++|..-+|..-||-++. +..+..-+.+
T Consensus 240 ~~~~---~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~-~~v~~~l~~~ 297 (330)
T cd03465 240 ADLG---ADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIK-EEVKELLEKL 297 (330)
T ss_pred HHhC---CCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHH-HHHHHHHHHH
Confidence 5433 46666654411 0 124666778776344445664444 3333333333
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=89.86 E-value=1.1 Score=42.92 Aligned_cols=59 Identities=12% Similarity=0.300 Sum_probs=44.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC--Cccc-cc-------hhHHHHHHHHHHcCCcEEEEEee
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT--PQVY-NW-------SGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
-+++.|++.|+.||++|++.|.+- |.-.+... |-++ ++ +....+++.|.+.|+|| +++.
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv--~~Gl 85 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV--FVGL 85 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE--EEeC
Confidence 378999999999999999999876 55554422 3222 11 36889999999999999 4444
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=89.45 E-value=0.68 Score=49.25 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
+.-|+.||+.||+-|++-|| |.|...|..|...=.++++-++++|||| .|-||-
T Consensus 27 ~d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CCHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 34678899999999999997 6664458889998899999999999999 899994
No 34
>PRK10785 maltodextrin glucosidase; Provisional
Probab=87.34 E-value=13 Score=42.34 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc-------------chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
|-+++.+.|..||++||++|-+-= +.|..+--.|+ ...+++|++.|++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 679999999999999999998854 23433333343 35789999999999999977777755553
Q ss_pred CCCCCCcCCCChhHHhhhc-----------cCCCeeeeCCCCCcccceeec-ccCcccccCCCchhHHHHHHHHHHH-HH
Q 008542 197 NVGDDVHIPLPQWVMEIGQ-----------NNPEIYFTDREGRRNSECLTW-GIDKERVLRGRTAVEVYFDYMRSFR-VE 263 (562)
Q Consensus 197 NVGD~~~IpLP~WV~e~g~-----------~~pDI~~tDr~G~rn~E~lSl-~~D~~pvl~GRTpiq~Y~dfm~SF~-~~ 263 (562)
+ -.|+..... .+.|-|.-+..|+ +.+| +++.+|-|.=. -+..+++|..=. +-
T Consensus 254 ----~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~--np~v~~~l~~~~~~v 318 (598)
T PRK10785 254 ----S-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQ--SEEVVNEIYRGEDSI 318 (598)
T ss_pred ----C-----CHHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCC--CHHHHHHHHhhhhHH
Confidence 1 127654321 1123444344442 4454 46678877633 345666665311 12
Q ss_pred HhhhhcCceEEEEEeeccCCCCCCCCCCCCCCCCcCCC---Cc--ccccccHHHHHHHHHHHHHhC
Q 008542 264 FNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHGWKYPG---IG--EFQCYDKYLMKSLSKAAEARG 324 (562)
Q Consensus 264 F~~~~~~~vI~eI~VGLGP~GELRYPSyp~~~gW~~PG---iG--EFQCYDky~~~~l~~~a~~~G 324 (562)
+.-.+.. .| ..+||++=- ++ ...+-+....+.|++++++..
T Consensus 319 ~~~Wl~~-------------------~~-giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~ 364 (598)
T PRK10785 319 VRHWLKA-------------------PY-NIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEEN 364 (598)
T ss_pred HHHhhcC-------------------CC-CCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhC
Confidence 3333321 00 146888722 22 223345566788888888765
No 35
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=86.95 E-value=1.1 Score=45.09 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeec--CCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEA--HTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~--~~p~---~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGN 197 (562)
.+.+.++++.++|+++|.++.=|+.... -+|. +|-|.+++++++.+++.|.++ + .|-||+.
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~ 210 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH
Confidence 4566677888999999999987665431 1344 445899999999888878665 3 4999973
No 36
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=86.70 E-value=6.2 Score=40.06 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCCccc-CHHHHHHHHHHHHHcC-cceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 008542 124 MNCELV-DPEILVNQLKILKSIN-VDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (562)
Q Consensus 124 ~~~~~~-~~~~~~~~L~~LK~~G-VdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~ 201 (562)
.+|+.. +.+...+-|+.+-.+| +|.|.|+..++ =...+++.+.+++.|.|+ |.|+|.=.+
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kv--I~S~H~f~~----- 147 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKV--VLSYHDFEK----- 147 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEE--EEeeCCCCC-----
Confidence 345443 3344444567777788 99999987553 134678889999999987 999995333
Q ss_pred CcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccc-cCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeec
Q 008542 202 VHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGL 280 (562)
Q Consensus 202 ~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pv-l~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGL 280 (562)
+++.|-+. + .-.+..++++|-+.+ ..-+++.++.+=+ .|..++..... .+-=|.++|
T Consensus 148 ---tP~~~~l~--~-------------~~~~~~~~gaDivKia~~a~~~~D~~~ll--~~~~~~~~~~~--~~P~i~~~M 205 (253)
T PRK02412 148 ---TPPKEEIV--E-------------RLRKMESLGADIVKIAVMPQSEQDVLTLL--NATREMKELYA--DQPLITMSM 205 (253)
T ss_pred ---CcCHHHHH--H-------------HHHHHHHhCCCEEEEEecCCCHHHHHHHH--HHHHHHHhcCC--CCCEEEEeC
Confidence 34444321 1 012444667776665 3556666655432 44444443211 134578999
Q ss_pred cCCCCC
Q 008542 281 GPCGEL 286 (562)
Q Consensus 281 GP~GEL 286 (562)
|+.|-+
T Consensus 206 G~~G~~ 211 (253)
T PRK02412 206 GKLGRI 211 (253)
T ss_pred CCCchH
Confidence 998854
No 37
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=85.58 E-value=3 Score=43.01 Aligned_cols=70 Identities=9% Similarity=0.243 Sum_probs=53.9
Q ss_pred CccEEEeeccceeeCCCccc----CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 110 YVPVYVMLPLGIIDMNCELV----DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~----~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.+||+||+=-- .+.+. .-+.+..+++.+|++|+|||.+.+= ..+++.|...-++|++.++ |+++
T Consensus 51 ~ipv~vMIRPR----~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~v 118 (248)
T PRK11572 51 TIPVHPIIRPR----GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAV 118 (248)
T ss_pred CCCeEEEEecC----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCce
Confidence 38999997432 12222 4578999999999999999998764 4588999999999999994 7887
Q ss_pred EEEEee
Q 008542 186 QVVMSF 191 (562)
Q Consensus 186 qvvmsF 191 (562)
--=++|
T Consensus 119 TFHRAf 124 (248)
T PRK11572 119 TFHRAF 124 (248)
T ss_pred EEechh
Confidence 444555
No 38
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=85.13 E-value=2.2 Score=46.14 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
..+.|+++++..|++|+||..+++. .+..+.+.-...+++.|++.|+|| .+||--
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD~ 69 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFDM 69 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEecc
Confidence 6789999999999999999999996 345577899999999999999999 788743
No 39
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.97 E-value=2.3 Score=41.29 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCccc-------------cchhHHHHHHHHHHcCCcEEEEEee-ecc
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVY-------------NWSGYRRLFQIVRELELKLQVVMSF-HEC 194 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvvmsF-HqC 194 (562)
|.+.|.+.|..||++||++|.+- .+.|.. +..-| .+..+++|++.|++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 45789999999999999999886 233321 11112 3467899999999999999655544 655
Q ss_pred CC
Q 008542 195 GG 196 (562)
Q Consensus 195 GG 196 (562)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 40
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=84.67 E-value=1.2 Score=46.33 Aligned_cols=106 Identities=22% Similarity=0.318 Sum_probs=69.1
Q ss_pred CCCCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCC
Q 008542 104 DFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELEL 183 (562)
Q Consensus 104 ~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GL 183 (562)
+++...+|.|.+-.--..-.+...+.+. +++-|+.+++.||.||.||-+ .+++|+-=..|+++++.+.+++|
T Consensus 80 ~Ya~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~L 151 (273)
T PF10566_consen 80 DYAKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKL 151 (273)
T ss_dssp HHHHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCc
Confidence 4666777887776544441111113233 699999999999999999986 45899999999999999999988
Q ss_pred cEEEEEeeeccCCCCCCCCcCCCCh-hHHhhhccCCCeeeeCCCCCcccceeecc
Q 008542 184 KLQVVMSFHECGGNVGDDVHIPLPQ-WVMEIGQNNPEIYFTDREGRRNSECLTWG 237 (562)
Q Consensus 184 KvqvvmsFHqCGGNVGD~~~IpLP~-WV~e~g~~~pDI~~tDr~G~rn~E~lSl~ 237 (562)
- +-||.|- .|. |- +.+|.++ .++|.|-.|+-.|.
T Consensus 152 m----vnfHg~~----------kPtG~~----RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 152 M----VNFHGAT----------KPTGLR----RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp E----EEETTS-------------TTHH----HCSTTEE--EE--S--GGGGGTT
T ss_pred E----EEecCCc----------CCCccc----ccCccHH--HHHHhhhhhhcccc
Confidence 5 4899643 443 33 6888764 57888888885444
No 41
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=84.31 E-value=1.7 Score=43.39 Aligned_cols=67 Identities=15% Similarity=0.314 Sum_probs=46.3
Q ss_pred CCCccEEEeecc---ceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCc
Q 008542 108 TPYVPVYVMLPL---GIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (562)
Q Consensus 108 ~~~vpvyVMLPL---d~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLK 184 (562)
...+||+||+=- |.+-++ ..-+.+..+++.+|++|+|||.+.+ +- .+++.|...-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 356899999743 222111 1447899999999999999999865 33 488999999999999987 777
Q ss_pred E
Q 008542 185 L 185 (562)
Q Consensus 185 v 185 (562)
+
T Consensus 117 ~ 117 (201)
T PF03932_consen 117 V 117 (201)
T ss_dssp E
T ss_pred E
Confidence 7
No 42
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=84.23 E-value=13 Score=36.35 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=74.4
Q ss_pred eeeCCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 121 IIDMNCELV-DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 121 ~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
....+|... +.+.-.+-|+.+-.+|++.|.|+.+ .+.........+++.+-|| |+|+|-..+
T Consensus 63 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~f~~--- 125 (224)
T PF01487_consen 63 TKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHDFEK--- 125 (224)
T ss_dssp BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEESS----
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEeccCCC---
Confidence 334455553 4455566677777788998888654 1344444477888899998 999995444
Q ss_pred CCCcCCCChh--HHhhhccCCCeeeeCCCCCcccceeecccCcccc-cCCCchhHHHHHHHHHHHHHHhhhhcCceEEEE
Q 008542 200 DDVHIPLPQW--VMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEI 276 (562)
Q Consensus 200 D~~~IpLP~W--V~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pv-l~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI 276 (562)
-|.| +.+. -.+...+++|-+.+ ...+++.+..+ +..|..++.... .+.=|
T Consensus 126 ------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~~p~i 178 (224)
T PF01487_consen 126 ------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---DIPVI 178 (224)
T ss_dssp --------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---SSEEE
T ss_pred ------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---CCcEE
Confidence 3444 2211 12333466676555 45667777666 666777777652 36778
Q ss_pred EeeccCCCCC
Q 008542 277 EVGLGPCGEL 286 (562)
Q Consensus 277 ~VGLGP~GEL 286 (562)
-++||+.|.+
T Consensus 179 ~~~MG~~G~~ 188 (224)
T PF01487_consen 179 AISMGELGRI 188 (224)
T ss_dssp EEEETGGGHH
T ss_pred EEEcCCCchh
Confidence 9999999864
No 43
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=84.07 E-value=10 Score=37.66 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCccc-CHHHHHHHHHHH-HHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCC
Q 008542 125 NCELV-DPEILVNQLKIL-KSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (562)
Q Consensus 125 ~~~~~-~~~~~~~~L~~L-K~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~ 202 (562)
+|... +.+...+-|+.+ ...|+|.|.|+.+|.. ...+++++.+++.|-|| |+|+|.=.+.
T Consensus 70 GG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~t----- 131 (228)
T TIGR01093 70 GGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQKT----- 131 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCCC-----
Confidence 44443 334444445655 7789999999987741 24678888888999888 9999954321
Q ss_pred cCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccc-cCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecc
Q 008542 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLG 281 (562)
Q Consensus 203 ~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pv-l~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLG 281 (562)
-+.+.|+. . -.+..++|+|-+.+ ..-+++.+..+= .+|..++.... .+-=|.++||
T Consensus 132 -p~~~~l~~-~----------------~~~~~~~gaDivKia~~a~~~~D~~~l--l~~~~~~~~~~---~~p~i~~~MG 188 (228)
T TIGR01093 132 -PSWEEIVE-R----------------LEKALSYGADIVKIAVMANSKEDVLTL--LEITNKVDEHA---DVPLITMSMG 188 (228)
T ss_pred -CCHHHHHH-H----------------HHHHHHhCCCEEEEEeccCCHHHHHHH--HHHHHHHHhcC---CCCEEEEeCC
Confidence 12233321 1 11333566776655 344555544432 25555555441 2445789999
Q ss_pred CCCCC
Q 008542 282 PCGEL 286 (562)
Q Consensus 282 P~GEL 286 (562)
+.|-+
T Consensus 189 ~~G~~ 193 (228)
T TIGR01093 189 DRGKI 193 (228)
T ss_pred CCChh
Confidence 99865
No 44
>PRK01060 endonuclease IV; Provisional
Probab=83.78 E-value=2 Score=42.70 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=42.2
Q ss_pred eeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc-----cchhHHHHHHHHHHcCCcE
Q 008542 116 MLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-----NWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 116 MLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-----dWs~Y~~l~~mvr~~GLKv 185 (562)
|+++++.++ -.+.++..|+.++++|.++|++.+. .|..+ +=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 667777652 2233999999999999999999653 23333 2234677888999999997
No 45
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=83.49 E-value=13 Score=38.39 Aligned_cols=83 Identities=10% Similarity=0.194 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCcccc-----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 008542 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYN-----WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~Yd-----Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~ 201 (562)
.+.+.+.+-++.+++.| +|.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~--------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVH--------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEEC---------
Confidence 46788999999999988 689999986532 223333 345788888999999998 66664
Q ss_pred CcCCCChhHHhhhccCCCeeeeCCCC
Q 008542 202 VHIPLPQWVMEIGQNNPEIYFTDREG 227 (562)
Q Consensus 202 ~~IpLP~WV~e~g~~~pDI~~tDr~G 227 (562)
+.|..-.=+-+++.+ .+.+.++..|
T Consensus 92 P~i~~~s~~~~e~~~-~g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREAVE-KGYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhhhh-CCeEEECCCC
Confidence 333322223334443 5788999888
No 46
>PHA00442 host recBCD nuclease inhibitor
Probab=82.64 E-value=2.2 Score=35.13 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=22.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHc
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~ 181 (562)
.-|.+|++.||| ||+||.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457888888887 899999999998653
No 47
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.50 E-value=2.2 Score=44.07 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcc---ccchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQV---YNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
...++++.++|+|+|.+.--|+.-.--+|.. |-+.+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 4455667899999998887786422234554 44999999999999887432 3 588975
No 48
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=79.86 E-value=22 Score=34.99 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCC
Q 008542 124 MNCELV-DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (562)
Q Consensus 124 ~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~ 202 (562)
.+|++. +.+...+-|+.+-.+|+|.|.|+..+ +-.+++++.+++.|-|| |+|+|.-.+..
T Consensus 67 eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~tp---- 127 (225)
T cd00502 67 EGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSGTP---- 127 (225)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCCCc----
Confidence 344443 33444445677777889999888754 34777888888888888 99999654421
Q ss_pred cCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccc-cCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecc
Q 008542 203 HIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV-LRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLG 281 (562)
Q Consensus 203 ~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pv-l~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLG 281 (562)
+.+.|..-. .+.-.+++|-+.+ ..-+++.+..+= + .|..++.... .+.=|.++||
T Consensus 128 --~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~~l-l-~~~~~~~~~~---~~p~i~~~MG 183 (225)
T cd00502 128 --SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNLRL-L-KFTRQVKNLY---DIPLIAINMG 183 (225)
T ss_pred --CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHHHH-H-HHHHHHHhcC---CCCEEEEEcC
Confidence 233343211 1222345565554 233444444332 2 4444554432 2455789999
Q ss_pred CCCCC
Q 008542 282 PCGEL 286 (562)
Q Consensus 282 P~GEL 286 (562)
+.|.+
T Consensus 184 ~~G~~ 188 (225)
T cd00502 184 ELGKL 188 (225)
T ss_pred CCCch
Confidence 99964
No 49
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=79.68 E-value=18 Score=41.23 Aligned_cols=65 Identities=20% Similarity=0.405 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCcceEEE-eee-e-eeeecCCCcccc-------------------------chhHHHHHHHHHHcC
Q 008542 131 PEILVNQLKILKSINVDGVMV-DCW-W-GIVEAHTPQVYN-------------------------WSGYRRLFQIVRELE 182 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~v-dVW-W-GiVE~~~p~~Yd-------------------------Ws~Y~~l~~mvr~~G 182 (562)
...+...|..||++||+.|.+ +|. . +.-|..+...|+ ...++++++.+++.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 346678899999999999976 332 1 111111111122 356999999999999
Q ss_pred CcEEEEEee-eccC
Q 008542 183 LKLQVVMSF-HECG 195 (562)
Q Consensus 183 LKvqvvmsF-HqCG 195 (562)
|+|..=+-| |-|+
T Consensus 243 i~VilDvV~NH~~~ 256 (605)
T TIGR02104 243 IRVIMDVVYNHTYS 256 (605)
T ss_pred CEEEEEEEcCCccC
Confidence 999777777 5443
No 50
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=79.58 E-value=3.1 Score=44.39 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=52.9
Q ss_pred ccEEEeeccceeeCC-----Cc----ccCHHHHHHH-----------HHHHHHcCcce-EEEeeeeeeeecCCCcccc--
Q 008542 111 VPVYVMLPLGIIDMN-----CE----LVDPEILVNQ-----------LKILKSINVDG-VMVDCWWGIVEAHTPQVYN-- 167 (562)
Q Consensus 111 vpvyVMLPLd~V~~~-----~~----~~~~~~~~~~-----------L~~LK~~GVdG-V~vdVWWGiVE~~~p~~Yd-- 167 (562)
+-..+..|++++... +- ..+++.+.+- +++..++|++| |.+..+-+..+-=+|.+|+
T Consensus 173 i~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef 252 (378)
T cd03308 173 AGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKF 252 (378)
T ss_pred cceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHH
Confidence 445888999855411 11 1255554443 44556789998 7777762222222466666
Q ss_pred -chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 168 -WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 168 -Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
|-+++++++-+++.|.++ |+ |-||.
T Consensus 253 ~~P~~k~i~~~i~~~g~~~--il--h~cG~ 278 (378)
T cd03308 253 YWPSFKKVVEGLAARGQRI--FL--FFEGD 278 (378)
T ss_pred HHHHHHHHHHHHHhcCCCE--EE--EcCCC
Confidence 999999999999988665 54 99984
No 51
>smart00642 Aamy Alpha-amylase domain.
Probab=77.96 E-value=9.2 Score=36.51 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
-+.+.+.+.|..||++||++|-+.-.+-..+. .....| ..+.++++++.+++.|+||..=+-+--|
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 46799999999999999999977654322220 001111 3467899999999999999766666555
Q ss_pred CC
Q 008542 195 GG 196 (562)
Q Consensus 195 GG 196 (562)
+.
T Consensus 96 ~~ 97 (166)
T smart00642 96 SD 97 (166)
T ss_pred CC
Confidence 54
No 52
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.76 E-value=9.7 Score=39.12 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++ . .-+...+++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip--------D----Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP--------D----LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC--------C----CCHHHHHHHHHHHHHcCCcEEEE
Confidence 456888888776653 2367788999999999999996 1 12467889999999999999655
Q ss_pred EeeeccCCCCCCCCcCCCChhHHhhhccCCC-eeeeCCCCC
Q 008542 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGR 228 (562)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~pD-I~~tDr~G~ 228 (562)
++- + +.+..+..+.+..++ |++..+.|.
T Consensus 149 vap-----------~-t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 149 VAP-----------T-TTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 544 2 346788877777777 555577664
No 53
>PLN02361 alpha-amylase
Probab=76.96 E-value=7.8 Score=42.31 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccc-------------hhHHHHHHHHHHcCCcEEEEEee-eccC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-------------SGYRRLFQIVRELELKLQVVMSF-HECG 195 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mvr~~GLKvqvvmsF-HqCG 195 (562)
-++.|.+.|..||++||++|-+.-=. |..++..|+- +.+++|++.+++.|+||.+=+-+ |-||
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 46899999999999999999886532 3333333333 46899999999999999665555 7777
Q ss_pred CCCC
Q 008542 196 GNVG 199 (562)
Q Consensus 196 GNVG 199 (562)
..-|
T Consensus 104 ~~~~ 107 (401)
T PLN02361 104 TTQG 107 (401)
T ss_pred CCCC
Confidence 5433
No 54
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=76.42 E-value=14 Score=37.96 Aligned_cols=88 Identities=13% Similarity=0.269 Sum_probs=60.0
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
..+.+.+.+-++.+|++| +|.+.+|.=|- ...+-+.|+|+ --+++++-+++.|+|+ ++..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 357889999999999999 88999997443 21111245555 6889999999999998 6666632 221
Q ss_pred CCcCCCChhHHhhhccCCCeeeeCCCCCc
Q 008542 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 201 ~~~IpLP~WV~e~g~~~pDI~~tDr~G~r 229 (562)
+ -| +-++++ .++.|.++.+|..
T Consensus 93 ~----~~--~~~e~~-~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEAA-EKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHHH-HCCeEEECCCCCe
Confidence 1 12 334444 3688999888763
No 55
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=76.34 E-value=5.2 Score=41.38 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChh-
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW- 209 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W- 209 (562)
+++.+.+++|.++|++.|.+|.= |+.+=...+....-.+.+++.+.+++.+...++ ..|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 46778889999999999999984 665443223345666777788877765655543 46999998643222222223
Q ss_pred HHhh-hccCCCeeeeCCCCC
Q 008542 210 VMEI-GQNNPEIYFTDREGR 228 (562)
Q Consensus 210 V~e~-g~~~pDI~~tDr~G~ 228 (562)
+.+. .+..-|.++-|-...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 2222 244567777666543
No 56
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.16 E-value=11 Score=41.18 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=50.1
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeee-----------eeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWW-----------GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN 197 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWW-----------GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGN 197 (562)
.+.+.+.+.++++|++|++-+.||-=| |.-+. .+.+|= +|.+.|++-|++.|||. =|.|=----|
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVS 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EE--EEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeE--EEEecccccc
Confidence 378899999999999999999998766 33333 244442 58999999999999999 5554211112
Q ss_pred CCCCCcCCCChhHH
Q 008542 198 VGDDVHIPLPQWVM 211 (562)
Q Consensus 198 VGD~~~IpLP~WV~ 211 (562)
.+-...-.-|.|+.
T Consensus 131 ~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 131 PDSDLYREHPDWVL 144 (394)
T ss_dssp SSSCHCCSSBGGBT
T ss_pred chhHHHHhCcccee
Confidence 22222334677776
No 57
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.83 E-value=17 Score=36.54 Aligned_cols=63 Identities=21% Similarity=0.198 Sum_probs=45.7
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 008542 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvm 189 (562)
.+|+.+|.=++.+- ...+++-++.++++|++||.+.-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 46888885544332 124677899999999999999521 1 1 367789999999999997766
Q ss_pred ee
Q 008542 190 SF 191 (562)
Q Consensus 190 sF 191 (562)
+-
T Consensus 137 ~P 138 (242)
T cd04724 137 AP 138 (242)
T ss_pred CC
Confidence 64
No 58
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.08 E-value=6.8 Score=39.01 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=45.6
Q ss_pred eccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchh--HHHHHHHHHHcCCcEEEE
Q 008542 117 LPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG--YRRLFQIVRELELKLQVV 188 (562)
Q Consensus 117 LPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~--Y~~l~~mvr~~GLKvqvv 188 (562)
+||.+.. -.+.....++..++.+|++|.++|++.+. . .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~--~~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~~-~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYE--KALPAGECWLEKLAIAKTAGFDFVEMSVD-E-SD-ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeec--ccCCCCCCHHHHHHHHHHcCCCeEEEecC-c-cc-cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 4566553 12333457899999999999999999643 0 00 1123456664 668899999999999654
No 59
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.57 E-value=8.4 Score=38.79 Aligned_cols=55 Identities=15% Similarity=-0.005 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeee---ecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIV---EAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiV---E~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
+..|+.||++|++.|.+++= +.- +.-. +..+|..+.+.++.++++|+++.+-+-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 56788999999999988733 211 1111 2468899999999999999997655544
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.71 E-value=3.5 Score=37.89 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=35.9
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 138 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
|+.++++|+++|++..++..-... + =...+++.++++++||++..+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEEE
Confidence 688999999999999886644321 1 356889999999999997443
No 61
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.08 E-value=7.6 Score=38.86 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccch--hHHHHHHHHHHcCCcEEEE
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS--GYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs--~Y~~l~~mvr~~GLKvqvv 188 (562)
.-.|...|+.++++|.++|++.++.. + ..+..++|+ .-.++.++++++||+|..+
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 45799999999999999999965431 1 123344544 4667888999999999544
No 62
>PRK10150 beta-D-glucuronidase; Provisional
Probab=71.88 E-value=73 Score=36.10 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=36.7
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvm 189 (562)
.+.+++.++|+.||++|++.|.+- .. | .-.++.++|-+.||-|..=+
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~-----p------~~~~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HY-----P------YSEEMLDLADRHGIVVIDET 356 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cC-----C------CCHHHHHHHHhcCcEEEEec
Confidence 577889999999999999999982 11 1 11478999999999886433
No 63
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=71.16 E-value=8.6 Score=43.81 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=41.2
Q ss_pred CHHHHHHHH-HHHHHcCcceEEE-eeeeeeeecCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEe
Q 008542 130 DPEILVNQL-KILKSINVDGVMV-DCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMS 190 (562)
Q Consensus 130 ~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvvms 190 (562)
+-+++...| ..||++||+.|.+ +|... |...+|- .+++|++.+++.||+|..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 357888886 9999999999999 66432 2222232 489999999999999954444
Q ss_pred e
Q 008542 191 F 191 (562)
Q Consensus 191 F 191 (562)
+
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 4
No 64
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.91 E-value=8.5 Score=43.30 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+.+++.+.|..||++||++|.+-= +.| .++.++|. .+++|++.+++.||+|..=+-+-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 458899999999999999997632 122 24455664 38999999999999996655663
Q ss_pred ccC
Q 008542 193 ECG 195 (562)
Q Consensus 193 qCG 195 (562)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 343
No 65
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=70.26 E-value=15 Score=33.43 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHc-CCcEEEEEeee
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKLQVVMSFH 192 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~-GLKvqvvmsFH 192 (562)
.+.+...++.||+.|||.|.+.. -++-. .|.- ---.++++.+++++. |++| |..+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlss--C~~~~-~~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSS--CMVKG-NPHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcC--CEecC-CCCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 67889999999999999888754 22322 1111 444599999999999 9988 99888
No 66
>PRK09875 putative hydrolase; Provisional
Probab=69.90 E-value=1.3e+02 Score=31.76 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCCcccCHHHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCC
Q 008542 124 MNCELVDPEILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (562)
Q Consensus 124 ~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~ 202 (562)
.++.+.+.+...+.|+.+|++|+..| ||+= .|+ |+ .=..|.++.++.|+.| |+++ |=-.
T Consensus 26 ~~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~I--v~~T-------G~y~ 85 (292)
T PRK09875 26 VDCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINV--VACT-------GYYQ 85 (292)
T ss_pred cccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcE--EEcC-------cCCC
Confidence 34567788999999999999999876 4432 221 21 2467888999999888 7776 1112
Q ss_pred cCCCChhHH
Q 008542 203 HIPLPQWVM 211 (562)
Q Consensus 203 ~IpLP~WV~ 211 (562)
..-.|.|+.
T Consensus 86 ~~~~p~~~~ 94 (292)
T PRK09875 86 DAFFPEHVA 94 (292)
T ss_pred CccCCHHHh
Confidence 234788886
No 67
>PLN02591 tryptophan synthase
Probab=69.02 E-value=24 Score=36.28 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=63.9
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
..+|+.+|.=...|- .-.+++=++.+|++||+||-++= .-+..-.++.+.++++||.....
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 446888887777653 24788889999999999999971 23467778999999999999665
Q ss_pred EeeeccCCCCCCCCcCCCChhHHhhhccCCCeee-eCCCCC
Q 008542 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYF-TDREGR 228 (562)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~-tDr~G~ 228 (562)
.+- + +-+..+..+.+.-++..| ..+.|.
T Consensus 138 v~P-----------t-t~~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TTP-----------T-TPTERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEeeCCCC
Confidence 543 1 345688887776666443 355544
No 68
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=68.75 E-value=16 Score=39.27 Aligned_cols=85 Identities=9% Similarity=0.164 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCC
Q 008542 129 VDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDD 201 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~ 201 (562)
.+.+.+.+-++.+++.| +|++.+|.+|+.- -+.|.|+ .-+++++.+++.|+|+ ++..|
T Consensus 40 ~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~--------- 104 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKV--VLWVH--------- 104 (441)
T ss_dssp TSHHHHHHHHHHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEE---------
T ss_pred CCHHHHHHHHHHHHHcCCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEE--EEEee---------
Confidence 46888899999998865 6899999998762 2245554 5799999999999998 77776
Q ss_pred CcCCCChh---HHhhhccCCCeeeeCCCCCc
Q 008542 202 VHIPLPQW---VMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 202 ~~IpLP~W---V~e~g~~~pDI~~tDr~G~r 229 (562)
+.|....- ..+.+++ .++++++.+|..
T Consensus 105 P~v~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 134 (441)
T PF01055_consen 105 PFVSNDSPDYENYDEAKE-KGYLVKNPDGSP 134 (441)
T ss_dssp SEEETTTTB-HHHHHHHH-TT-BEBCTTSSB
T ss_pred cccCCCCCcchhhhhHhh-cCceeecccCCc
Confidence 34443333 3333333 488999999843
No 69
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.65 E-value=12 Score=36.97 Aligned_cols=51 Identities=12% Similarity=0.412 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc--cc--hhHHHHHHHHHHcCCcEEEEEe
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NW--SGYRRLFQIVRELELKLQVVMS 190 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dW--s~Y~~l~~mvr~~GLKvqvvms 190 (562)
-++..|+.++++|+++|++ |+. .+..| ++ ..-+++.++++++||++..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5999999999999999998 321 11111 12 2467788999999999854333
No 70
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=68.47 E-value=9.3 Score=39.50 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
+-++++.++|+|+|.+.--|+-..--+|..|. +-+++++++-+++ + . +| .|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~--~i--lh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P--TI--LHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C--cE--EEECCC
Confidence 44555667899999998889854322577777 9999999999997 2 2 23 588986
No 71
>PRK10658 putative alpha-glucosidase; Provisional
Probab=65.29 E-value=47 Score=38.72 Aligned_cols=86 Identities=12% Similarity=0.241 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCC
Q 008542 130 DPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGDDV 202 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~ 202 (562)
+.+.+.+-++.+++.| +|.|.+|+.|.. ...-+.|.|+ .-+++++-+++.|+|+ ++..+ +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc---------C
Confidence 4566777778888755 589999998842 1112345543 4578889999999998 55564 3
Q ss_pred cCCCChhHHhhhccCCCeeeeCCCCCc
Q 008542 203 HIPLPQWVMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 203 ~IpLP~WV~e~g~~~pDI~~tDr~G~r 229 (562)
.|..-.-+-+++.+ -+.|.++.+|..
T Consensus 348 ~i~~~s~~f~e~~~-~gy~vk~~~G~~ 373 (665)
T PRK10658 348 YIAQKSPLFKEGKE-KGYLLKRPDGSV 373 (665)
T ss_pred CcCCCchHHHHHHH-CCeEEECCCCCE
Confidence 34333344555655 478999998874
No 72
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.67 E-value=14 Score=42.14 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=41.4
Q ss_pred ccCHHHHHHHH-HHHHHcCcceEEE-eeeeeeeecCCCccccch-----------------hHHHHHHHHHHcCCcEEEE
Q 008542 128 LVDPEILVNQL-KILKSINVDGVMV-DCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 128 ~~~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvv 188 (562)
.-+-+++...| ..||++||+.|.+ +|+ | .|...+|. .+++|++.|++.||||..=
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34557788785 9999999999985 432 2 23333443 4899999999999999544
Q ss_pred Eee
Q 008542 189 MSF 191 (562)
Q Consensus 189 msF 191 (562)
+-+
T Consensus 240 ~V~ 242 (633)
T PRK12313 240 WVP 242 (633)
T ss_pred ECC
Confidence 445
No 73
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=64.62 E-value=17 Score=37.55 Aligned_cols=75 Identities=21% Similarity=0.464 Sum_probs=56.8
Q ss_pred CCccEEEeeccceeeCCCccc----CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCc
Q 008542 109 PYVPVYVMLPLGIIDMNCELV----DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELK 184 (562)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~----~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLK 184 (562)
..+|||+|.== ..|.+. .-+.+..+++..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.
T Consensus 50 ~~ipv~~MIRP----RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~ 117 (241)
T COG3142 50 SKIPVYVMIRP----RGGDFVYSDDELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLG 117 (241)
T ss_pred cCCceEEEEec----CCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCc
Confidence 56899999632 223332 4478999999999999999998764 4699999999999999887 666
Q ss_pred EEEEEeeeccC
Q 008542 185 LQVVMSFHECG 195 (562)
Q Consensus 185 vqvvmsFHqCG 195 (562)
|--=++|-.|-
T Consensus 118 vTFHrAFD~~~ 128 (241)
T COG3142 118 VTFHRAFDECP 128 (241)
T ss_pred eeeehhhhhcC
Confidence 64467775443
No 74
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=64.44 E-value=7.6 Score=40.12 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
.+.++++.++|+|+|.+..=|+.-.--+|..|. +-+++++++-+++. .++ .|-||.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~i--lH~cG~ 241 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PTI--LHICGD 241 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----CcE--EEECCC
Confidence 345566778999999888777642223455555 88999999999875 233 577975
No 75
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=64.36 E-value=4.7 Score=43.42 Aligned_cols=202 Identities=18% Similarity=0.277 Sum_probs=112.3
Q ss_pred eEEEeee---eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeC
Q 008542 148 GVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTD 224 (562)
Q Consensus 148 GV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tD 224 (562)
.+-+.+| |..+|+ .+|+|+|..=+++++.||++||+++ +|--= -.-..|.|+. .|
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lh----GHtLv------W~~q~P~W~~-----------~~ 116 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPLH----GHTLV------WHSQVPDWLF-----------GD 116 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCeec----cceee------ecccCCchhh-----------cc
Confidence 4556777 999999 8999999999999999999999763 33100 0124788875 11
Q ss_pred CCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc-CceEEEEEeeccCCCCCCCCCCCCCCCCcCCCCc
Q 008542 225 REGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV-DGIIAEIEVGLGPCGELRYPTYPAKHGWKYPGIG 303 (562)
Q Consensus 225 r~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~-~~vI~eI~VGLGP~GELRYPSyp~~~gW~~PGiG 303 (562)
+ +.+.--+++++++...-..+|.+..- =+||.|+ |--.| ++.++ -|-.-|.|
T Consensus 117 e------------------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~-vdd~g-------~~R~s-~w~~~~~g 169 (345)
T COG3693 117 E------------------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEA-VDDQG-------SLRRS-AWYDGGTG 169 (345)
T ss_pred c------------------cChHHHHHHHHHHHHHHHHhccCceeEEEecccc-cCCCc-------hhhhh-hhhccCCc
Confidence 1 11222256777776666666555221 1244444 22222 34332 36554555
Q ss_pred ccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCccccCCcccccccchhHHHhHHHHHhHHHHHHHHHHh
Q 008542 304 EFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGFFRDGGEYDSYYGRFFLNWYSQVLIDHGDRVFALANL 383 (562)
Q Consensus 304 EFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t~FF~~gG~w~S~YGkFFL~WYS~~Li~HGdrVL~~A~~ 383 (562)
..|+..+|+.|.++ .|+--=-||.-- .++-.+.+ +-|+.+-+.
T Consensus 170 -----pd~I~~aF~~Area--------dP~AkL~~NDY~------ie~~~~kr------------------~~~~nlI~~ 212 (345)
T COG3693 170 -----PDYIKLAFHIAREA--------DPDAKLVINDYS------IEGNPAKR------------------NYVLNLIEE 212 (345)
T ss_pred -----cHHHHHHHHHHHhh--------CCCceEEeeccc------ccCChHHH------------------HHHHHHHHH
Confidence 58999999988773 243222232211 00111221 122222211
Q ss_pred hcCCCeeeEEecceeecCCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEEEEeecccccCC
Q 008542 384 AFEGTCISAKLSGIHWWYKTASHAAELTAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVD 448 (562)
Q Consensus 384 ~F~g~~l~aKV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~~ 448 (562)
. ..=|++|-|| +.+|| ++-+ ++...++-..+ .-|.|-|+.+..|=|||++..
T Consensus 213 L---kekG~pIDgi----G~QsH---~~~~--~~~~~~~~~a~-~~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 213 L---KEKGAPIDGI----GIQSH---FSGD--GPSIEKMRAAL-LKFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred H---HHCCCCccce----eeeee---ecCC--CCCHHHHHHHH-HHHhhcCCCceEEEeeeeccC
Confidence 1 1225666675 67788 3322 23333443333 344455999999999998865
No 76
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.33 E-value=17 Score=36.02 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCccccch--hHHHHHHHHHHcCCcEEEE
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVYNWS--GYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~YdWs--~Y~~l~~mvr~~GLKvqvv 188 (562)
-.++..|+.++++|+++|++.+- +.. .....+|+ .-+++.++++++||++..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 36889999999999999999532 221 12234565 3678999999999999654
No 77
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=62.05 E-value=23 Score=40.41 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCC--ccccch---hHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTP--QVYNWS---GYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHI 204 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p--~~YdWs---~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~I 204 (562)
..-..+.+++.||++||++-...+-|..+=|.+. +..|.. .|+.|++-+.+.|++-.|-| || -
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH-----------w 156 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH-----------W 156 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec-----------C
Confidence 3457899999999999999999999999999887 557775 59999999999999997776 45 3
Q ss_pred CCChhHHh
Q 008542 205 PLPQWVME 212 (562)
Q Consensus 205 pLP~WV~e 212 (562)
-||+|+.+
T Consensus 157 DlPq~LeD 164 (524)
T KOG0626|consen 157 DLPQALED 164 (524)
T ss_pred CCCHHHHH
Confidence 69999974
No 78
>PRK08508 biotin synthase; Provisional
Probab=61.33 E-value=49 Score=34.01 Aligned_cols=53 Identities=15% Similarity=0.034 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE-eeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 129 VDPEILVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
.+++.+.+..+.+++.|+..+.+ +-+= +....++.+|.++++.+++.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 36678888888889999988865 2111 12234789999999999998876643
No 79
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=60.75 E-value=50 Score=35.82 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecC---CCccc----cchhHHHHHHHHHHcCCcEEEEEeeeccCCC-CCCCCcCCC
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAH---TPQVY----NWSGYRRLFQIVRELELKLQVVMSFHECGGN-VGDDVHIPL 206 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~---~p~~Y----dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGN-VGD~~~IpL 206 (562)
+..+..+|++|++.|++++=|-.++.- .|.-. .| ..+++++-+++.||+| ++..|.-.|. .+++.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~~~~~~~~---- 148 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPGGNNGHEH---- 148 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCCCCCCcCc----
Confidence 889999999999999999873333542 12222 34 7888999999999999 9999965432 22221
Q ss_pred ChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEe
Q 008542 207 PQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEV 278 (562)
Q Consensus 207 P~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~V 278 (562)
.-+++..+. .-+-++.|.+.-+....+|.+ . .++..|++
T Consensus 149 -------------s~~~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~--~-~~VIg~~~ 187 (407)
T COG2730 149 -------------SGYTSDYKE-----------------ENENVEATIDIWKFIANRFKN--Y-DTVIGFEL 187 (407)
T ss_pred -------------ccccccccc-----------------cchhHHHHHHHHHHHHHhccC--C-Cceeeeee
Confidence 111222111 123478888888999999999 2 34554443
No 80
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.71 E-value=77 Score=35.35 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=79.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeee-eeee------ecCCCc-------cccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 127 ELVDPEILVNQLKILKSINVDGVMVDCW-WGIV------EAHTPQ-------VYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 127 ~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiV------E~~~p~-------~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
.+..+..+...|..|..+|++.|-+-|| +|.. .+.... .=.|+-...+++.+++.||++++=+.|-
T Consensus 59 v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 59 VLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4568999999999999999999999999 8753 332222 1235556677778889999998877762
Q ss_pred ccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc
Q 008542 193 ECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (562)
Q Consensus 193 qCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~ 269 (562)
--+=+-. .-..-=|.|.. .+.|+-.+....|.. +..+|++ .++.=++|+.+...+.-.-|.
T Consensus 139 ~~a~~~s-~~~~~~p~~~~---~~~~~~~~~~~~~~~----------~~~~ldP--g~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 139 RMAPPTS-PLTKRHPHWLT---TKRPGWVYVRHQGWG----------KRVWLDP--GIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred ccCCCCC-hhHhhCCCCcc---cCCCCeEEEecCCce----------eeeEeCC--CChHHHHHHHHHHHHHHhCCC
Confidence 1111000 00111244555 344555555444432 2233332 256778899998888877664
No 81
>PLN02229 alpha-galactosidase
Probab=60.66 E-value=21 Score=39.72 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=49.2
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCC-------CccccchhHHHHHHHHHHcCCcEEEEE--eeecc
Q 008542 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHT-------PQVYNWSGYRRLFQIVRELELKLQVVM--SFHEC 194 (562)
Q Consensus 129 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~-------p~~YdWs~Y~~l~~mvr~~GLKvqvvm--sFHqC 194 (562)
.+++.+.+...+ ||.+|.+-|.||-=|...++.. |.+|- +|.+.|++.+++.|||+=.-. ....|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 478888888887 5999999999988664333322 34444 689999999999999983322 23346
Q ss_pred CCCCC
Q 008542 195 GGNVG 199 (562)
Q Consensus 195 GGNVG 199 (562)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 55443
No 82
>PRK09989 hypothetical protein; Provisional
Probab=60.23 E-value=22 Score=35.32 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
-+...|++++++|.++|++.. +..++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 578899999999999999932 22233 3578888999999983
No 83
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=59.98 E-value=10 Score=39.95 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=35.0
Q ss_pred cCcceEEEeeeeee-----eecCCCccccchhHHHHHHHHHHcC-CcEEEEEeeeccCC
Q 008542 144 INVDGVMVDCWWGI-----VEAHTPQVYNWSGYRRLFQIVRELE-LKLQVVMSFHECGG 196 (562)
Q Consensus 144 ~GVdGV~vdVWWGi-----VE~~~p~~YdWs~Y~~l~~mvr~~G-LKvqvvmsFHqCGG 196 (562)
+|+|+|.+--.|+- +.++-=.+|-|-+++++++-+++.| .+ ..+|.||-
T Consensus 168 ~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG~ 222 (321)
T cd03309 168 LEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCGA 222 (321)
T ss_pred hCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCCC
Confidence 39999998666765 4433334444999999999999984 33 34589984
No 84
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=59.91 E-value=35 Score=35.39 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 107 GTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 107 ~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
..+.+|+.+|.=.+.|- ...+++=++.+|++||+||.++= =| +....++.+.++++||++.
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipD--------LP----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPD--------LP----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETT--------SB----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcC--------CC----hHHHHHHHHHHHHcCCeEE
Confidence 45678999998887753 24677889999999999998852 22 3566889999999999997
Q ss_pred EEEeeeccCCCCCCCCcCCCChhHHhhhccCCCee-eeCCCCC
Q 008542 187 VVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIY-FTDREGR 228 (562)
Q Consensus 187 vvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~-~tDr~G~ 228 (562)
...+=. ..+..+..+.+.-+... +..+.|.
T Consensus 145 ~lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~Gv 175 (259)
T PF00290_consen 145 PLVAPT------------TPEERIKKIAKQASGFIYLVSRMGV 175 (259)
T ss_dssp EEEETT------------S-HHHHHHHHHH-SSEEEEESSSSS
T ss_pred EEECCC------------CCHHHHHHHHHhCCcEEEeeccCCC
Confidence 666642 36778888776656644 4577765
No 85
>PLN02808 alpha-galactosidase
Probab=59.58 E-value=17 Score=39.86 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCCCccccc------hhHHHHHHHHHHcCCcEE
Q 008542 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHTPQVYNW------SGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 129 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mvr~~GLKvq 186 (562)
.+++.+.+...+ ||++|.+-|.||-=|-..++.+.|..-. +|.+.|++.|++.|||.=
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfG 114 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLG 114 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceE
Confidence 478888888887 6899999999998886665544443222 689999999999999983
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.40 E-value=21 Score=35.11 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
-++..|+.++++|.+||++.. | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 588999999999999998832 1 122 25778889999999984
No 87
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.30 E-value=19 Score=40.65 Aligned_cols=64 Identities=14% Similarity=0.302 Sum_probs=45.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecC-CCcccc-------------chhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAH-TPQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
-|-+++.+.|..||++||++|-+.=-+ +.. ....|+ .+.+++|++.++++|+||..=+-+--|
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 477899999999999999999764332 110 112232 346899999999999999766666444
Q ss_pred C
Q 008542 195 G 195 (562)
Q Consensus 195 G 195 (562)
+
T Consensus 107 s 107 (551)
T PRK10933 107 S 107 (551)
T ss_pred c
Confidence 3
No 88
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=58.71 E-value=23 Score=38.38 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeec----CCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
-+.-|..||+.||.-|.+-||=-=-.. -+-|.=|-..--++.+-+++.|+|| .+-||-
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 345688999999999999999322111 1233445555556666677889998 999993
No 89
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.53 E-value=45 Score=34.52 Aligned_cols=91 Identities=13% Similarity=0.244 Sum_probs=66.6
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
..+|+.+|.=+..|- .-.+++-++.++++|||||.++-- | +.-..++.+.++++||+....
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 457887887776653 236788899999999999998743 2 245789999999999999777
Q ss_pred EeeeccCCCCCCCCcCCCChhHHhhhccCCC-eeeeCCCCCcc
Q 008542 189 MSFHECGGNVGDDVHIPLPQWVMEIGQNNPE-IYFTDREGRRN 230 (562)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~~pD-I~~tDr~G~rn 230 (562)
++-. +.+..+..+.+.-.. |++..+.|..-
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG 181 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTG 181 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 7662 356788777665554 55557777653
No 90
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.82 E-value=41 Score=34.86 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=50.8
Q ss_pred cceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcc---ccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV---YNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 119 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+-+|.-=|.+.+.+++..--++||++|+..+....|= =+.+|.. +-.++++.+.+.+++.||.+ +-.+|
T Consensus 28 ~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 28 KIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred EEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3345445677899999999999999999988887663 1111221 22678999999999999998 55554
No 91
>PLN02389 biotin synthase
Probab=57.67 E-value=20 Score=38.85 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCC-------ccccchhHHHHHHHHHHcCCcE
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
-+.+|++||++|+|.+.+ .+|. .| ..-+|+.+.+.++.+++.|+++
T Consensus 177 ~~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 357889999999999988 4563 22 1238999999999999999988
No 92
>PRK04302 triosephosphate isomerase; Provisional
Probab=56.73 E-value=25 Score=34.70 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
..++.||++|+++|.++- ++++..+..-.++++.+++.||.+ |++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 458999999999998863 344445556788999999999988 66654
No 93
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.69 E-value=13 Score=36.73 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
..+.+...++|+|+|.+=++|+.+.+ +...+...--.++.+.|++.|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888899999999999999999886 567777777888888899899999544
No 94
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=56.40 E-value=27 Score=38.36 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc---c-------------------chhHHHHHHHHHHcCCcEEE
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY---N-------------------WSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mvr~~GLKvqv 187 (562)
.++.|.+.|..||.+||++|-+.-.+--........| | ...+++|++.|++.|+||.+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 3678999999999999999987654322211011222 2 23488999999999999988
Q ss_pred EEeeeccCC
Q 008542 188 VMSFHECGG 196 (562)
Q Consensus 188 vmsFHqCGG 196 (562)
=+-|=-|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 888866765
No 95
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=56.09 E-value=29 Score=39.02 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=48.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvvmsFHqCG 195 (562)
-+-+++.+.|..||++||++|-+.--.-.-+ ....| ....+++|++.|++.|+||..=+-+.-|+
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 4678999999999999999997754432211 11234 34578999999999999997777776555
No 96
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=55.95 E-value=10 Score=27.43 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=13.7
Q ss_pred HHHHHHHHHcCcceEEEe
Q 008542 135 VNQLKILKSINVDGVMVD 152 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vd 152 (562)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345578888999999987
No 97
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.48 E-value=23 Score=43.60 Aligned_cols=62 Identities=15% Similarity=0.357 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eee-eeeee-cC----------CCccccch-------------------------hH
Q 008542 130 DPEILVNQLKILKSINVDGVMV-DCW-WGIVE-AH----------TPQVYNWS-------------------------GY 171 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~v-dVW-WGiVE-~~----------~p~~YdWs-------------------------~Y 171 (562)
+-.+|...|..||++||+.|.+ +|+ .+.+. .. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 4578889999999999999976 343 33332 10 12345554 38
Q ss_pred HHHHHHHHHcCCcEEEEEee
Q 008542 172 RRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 172 ~~l~~mvr~~GLKvqvvmsF 191 (562)
+++++-++++||+|..=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 89999999999999554445
No 98
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=55.46 E-value=20 Score=37.17 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=48.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCCcCCCChhHH
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWVM 211 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~--GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~ 211 (562)
-.+++.++|+|+|.+.-=|+-+ -+|.+|+ +-+++++++-+++. |.++ .|-|||+ + ++-.++.
T Consensus 182 ~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~-----~-~~~~~~~ 248 (335)
T cd00717 182 YLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGA-----G-GLLEDLA 248 (335)
T ss_pred HHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCC-----H-HHHHHHH
Confidence 3344566999999754435533 4577777 99999999999998 4433 5667763 1 4555665
Q ss_pred hhhccCCCeeeeCCC
Q 008542 212 EIGQNNPEIYFTDRE 226 (562)
Q Consensus 212 e~g~~~pDI~~tDr~ 226 (562)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 43 3466666654
No 99
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=55.17 E-value=86 Score=31.38 Aligned_cols=47 Identities=9% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCcceEEE-eeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 133 ILVNQLKILKSINVDGVMV-DCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
.....++.++++||.++.+ .+.. ..++.+.+++++++.+|.+.+.+|
T Consensus 15 ~~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 15 DRPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp THHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 3677889999999988842 2222 455588999999999999999999
No 100
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=54.64 E-value=36 Score=38.09 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=48.1
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCC-Ccccc-------------chhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHT-PQVYN-------------WSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
=|-+.|.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.|++.|+||..=+-+.-+
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 46789999999999999999977543 23211 22332 467899999999999999777777655
Q ss_pred CC
Q 008542 195 GG 196 (562)
Q Consensus 195 GG 196 (562)
+.
T Consensus 102 s~ 103 (539)
T TIGR02456 102 SD 103 (539)
T ss_pred CC
Confidence 43
No 101
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=53.38 E-value=26 Score=34.70 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.++..|++++++|.+||++ |+ |.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 4888999999999999999 22 111 24788889999999998
No 102
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=52.55 E-value=25 Score=36.54 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHc--CCcEEEEEeeeccCCCCCCCCcCCCChhHHh
Q 008542 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLPQWVME 212 (562)
Q Consensus 138 L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~--GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e 212 (562)
++++.++|+|+|.+.-=|+-+ =+|.+|+ +-+++++++-+++. +.. | .|-|||.. ++-.++.+
T Consensus 186 ~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~~------~~~~~~~~ 252 (338)
T TIGR01464 186 LVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGAG------HLLEELAE 252 (338)
T ss_pred HHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCcH------HHHHHHHh
Confidence 344667999998754435533 4577777 99999999999987 433 3 45577531 34445553
Q ss_pred hhccCCCeeeeCCC
Q 008542 213 IGQNNPEIYFTDRE 226 (562)
Q Consensus 213 ~g~~~pDI~~tDr~ 226 (562)
...|++-.|..
T Consensus 253 ---~~~~~~s~d~~ 263 (338)
T TIGR01464 253 ---TGADVVGLDWT 263 (338)
T ss_pred ---cCCCEEEeCCC
Confidence 33466666654
No 103
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=52.34 E-value=21 Score=36.76 Aligned_cols=110 Identities=16% Similarity=0.211 Sum_probs=59.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCc---cccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhh
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQ---VYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEI 213 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~ 213 (562)
-++++.++|+|+|.+.-=++ .--+|. +|-+-+++++++.+++.|.+ ..-+|-||-. + ++=.++.+
T Consensus 187 ~~~~~~~~G~d~i~~~d~~~--~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~~-----~-~~~~~l~~- 254 (343)
T PF01208_consen 187 YAKAQIEAGADGIFIFDSSG--SLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGNT-----T-PILDDLAD- 254 (343)
T ss_dssp HHHHHHHTT-SEEEEEETTG--GGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTHG-------GGHHHHHT-
T ss_pred HHHHHHHhCCCccccccccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCch-----H-HHHHHHHh-
Confidence 45667789999996665222 222344 67899999999999999993 2357889742 1 23333333
Q ss_pred hccCCCeeeeCCCCCc--------ccceeecccCcccccCCCchhHHHHHHHHHHH
Q 008542 214 GQNNPEIYFTDREGRR--------NSECLTWGIDKERVLRGRTAVEVYFDYMRSFR 261 (562)
Q Consensus 214 g~~~pDI~~tDr~G~r--------n~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~ 261 (562)
...|++-.|..=.- .+=+|-=++|..-+|. -||-+++++--+-..
T Consensus 255 --~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 255 --LGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp --SS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred --cCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 33455555533211 1112222455544566 677777765444444
No 104
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.09 E-value=56 Score=35.35 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=52.7
Q ss_pred cEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 112 pvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
|+++-.| |.+.+.+.+...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-+.
T Consensus 119 ~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t~v 189 (360)
T PRK12595 119 QSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--ISEI 189 (360)
T ss_pred eeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EEee
Confidence 4555566 666789999999999999999988866663111112234456789999999999999998 4444
Q ss_pred e
Q 008542 192 H 192 (562)
Q Consensus 192 H 192 (562)
|
T Consensus 190 ~ 190 (360)
T PRK12595 190 V 190 (360)
T ss_pred C
Confidence 4
No 105
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=49.77 E-value=1.7e+02 Score=30.79 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
..+.+.+.+-++.+++.| +|+|.+|.=|.. +-+.|+|+ .-+++++-+++.|+|+ ++..|
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~--~~~~~-------- 85 (339)
T cd06604 20 YYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKV--VTIID-------- 85 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEE--EEEEe--------
Confidence 346788888889998866 588999866541 23335444 3679999999999999 55554
Q ss_pred CCcCCC-C-hhHHhhhccCCCeeeeCCCCC
Q 008542 201 DVHIPL-P-QWVMEIGQNNPEIYFTDREGR 228 (562)
Q Consensus 201 ~~~IpL-P-~WV~e~g~~~pDI~~tDr~G~ 228 (562)
|.|.. | .-+-+++.+ .+.|.++.+|.
T Consensus 86 -P~v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 86 -PGVKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred -CceeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 22322 1 123344544 48899998885
No 106
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=49.54 E-value=8.8 Score=37.72 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.+.++++|.+||+.||..|-+ ++|...=..|... .|.+.++++||++
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAW 103 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEE
Confidence 468999999999999999865 6777656666665 4668899999987
No 107
>PLN00196 alpha-amylase; Provisional
Probab=49.31 E-value=53 Score=36.22 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcccc------c--------hhHHHHHHHHHHcCCcEEEEEeeeccC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYN------W--------SGYRRLFQIVRELELKLQVVMSFHECG 195 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd------W--------s~Y~~l~~mvr~~GLKvqvvmsFHqCG 195 (562)
+.+.+.+.|..||++||+.|-+.-= .|+.++..|+ - ..+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 5788999999999999999988742 2433333442 2 258999999999999997766665555
Q ss_pred C
Q 008542 196 G 196 (562)
Q Consensus 196 G 196 (562)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 4
No 108
>PRK07360 FO synthase subunit 2; Reviewed
Probab=49.00 E-value=17 Score=38.87 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeee---------cCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVE---------AHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE---------~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+..|++||++|++.+. +.-. .-.|++-.+..|.+..+.+++.||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999994 2111 11477778888899999999999999443333
No 109
>PLN02692 alpha-galactosidase
Probab=48.93 E-value=31 Score=38.25 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeecCCCccccc------hhHHHHHHHHHHcCCcE
Q 008542 129 VDPEILVNQLKI-----LKSINVDGVMVDCWWGIVEAHTPQVYNW------SGYRRLFQIVRELELKL 185 (562)
Q Consensus 129 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mvr~~GLKv 185 (562)
.+++.+.+...+ ||++|.+-|.||.=|-.-++...|..-. +|.+.|++.|++.|||.
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 367777777665 4888999999988654434433333333 78999999999999998
No 110
>PRK09505 malS alpha-amylase; Reviewed
Probab=48.84 E-value=38 Score=39.62 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeeeec-----------CCCccc-------------cchhHHHHHHHHHHcCCc
Q 008542 130 DPEILVNQLKILKSINVDGVMVD-CWWGIVEA-----------HTPQVY-------------NWSGYRRLFQIVRELELK 184 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vd-VWWGiVE~-----------~~p~~Y-------------dWs~Y~~l~~mvr~~GLK 184 (562)
|.+.|.+.|..||++||++|-+. ++=.+... .+...| ....+++|++-+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999864 22111000 001111 345799999999999999
Q ss_pred EEEEEee
Q 008542 185 LQVVMSF 191 (562)
Q Consensus 185 vqvvmsF 191 (562)
|..=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9655555
No 111
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=48.74 E-value=30 Score=36.33 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=48.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcC--CcEEEEEeeeccCCCCCCCCcCCCChhH
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELE--LKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~G--LKvqvvmsFHqCGGNVGD~~~IpLP~WV 210 (562)
.-++++.++|+|+|.+.-=|+-+ -+|.+|+ +-+.+++++-+++.| .+ |+ |-|||.. ++-.++
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~---il--h~cg~~~------~~~~~~ 256 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVP---VI--LFGKGAG------ELLEAM 256 (346)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---EE--EEcCCcH------HHHHHH
Confidence 34455667999999754335543 4577777 999999999999984 33 33 6788642 223345
Q ss_pred HhhhccCCCeeeeCCC
Q 008542 211 MEIGQNNPEIYFTDRE 226 (562)
Q Consensus 211 ~e~g~~~pDI~~tDr~ 226 (562)
. +...|++-.|..
T Consensus 257 ~---~~~~~~is~d~~ 269 (346)
T PRK00115 257 A---ETGADVVGLDWT 269 (346)
T ss_pred H---hcCCCEEeeCCC
Confidence 4 334466666543
No 112
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=48.56 E-value=62 Score=32.93 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
..+.++++++|+.||++|++.|.+- ...+ -.++.++|-+.||-|..=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 3578999999999999999999982 1122 157889999999999766655
No 113
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=47.91 E-value=27 Score=41.15 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhH----HHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGY----RRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y----~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpL 206 (562)
.+++..++.|.++|+..|-+|.= | .|.-....-+|..| -+.++.+-+ |++-...+++|-|-||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 47788889999999999999986 6 34333344567444 556666664 6654446799999998764 1 2
Q ss_pred ChhHHhhhccCCCeeeeC
Q 008542 207 PQWVMEIGQNNPEIYFTD 224 (562)
Q Consensus 207 P~WV~e~g~~~pDI~~tD 224 (562)
|. +.+-+-|.++-+
T Consensus 654 ~~----i~~l~vD~~~lE 667 (758)
T PRK05222 654 DA----IAALDADVISIE 667 (758)
T ss_pred HH----HHhCCCCEEEEE
Confidence 32 235667777765
No 114
>PLN02433 uroporphyrinogen decarboxylase
Probab=47.88 E-value=34 Score=36.02 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=47.3
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCcccc---chhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhh
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYN---WSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEI 213 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~ 213 (562)
-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||.. ++-.++.
T Consensus 184 ~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~~-------~~~~~~~-- 250 (345)
T PLN02433 184 YVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGSG-------GLLERLA-- 250 (345)
T ss_pred HHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCCH-------HHHHHHH--
Confidence 3445566999999665546543 3577777 999999999999863222 2345888852 3333444
Q ss_pred hccCCCeeeeCCC
Q 008542 214 GQNNPEIYFTDRE 226 (562)
Q Consensus 214 g~~~pDI~~tDr~ 226 (562)
+...|++-.|..
T Consensus 251 -~~~~~~i~~d~~ 262 (345)
T PLN02433 251 -GTGVDVIGLDWT 262 (345)
T ss_pred -hcCCCEEEcCCC
Confidence 334456655544
No 115
>PLN02877 alpha-amylase/limit dextrinase
Probab=47.40 E-value=33 Score=41.83 Aligned_cols=63 Identities=22% Similarity=0.434 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCcceEEE-eee-eeee-ecC-----------------------------CCccccchh----------
Q 008542 133 ILVNQLKILKSINVDGVMV-DCW-WGIV-EAH-----------------------------TPQVYNWSG---------- 170 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~v-dVW-WGiV-E~~-----------------------------~p~~YdWs~---------- 170 (562)
+.-.-|+.||++||..|++ +|+ .+-| |.. ....|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3445688999999999986 666 5444 211 023488976
Q ss_pred --------------HHHHHHHHHHcCCcEEEEEee-eccC
Q 008542 171 --------------YRRLFQIVRELELKLQVVMSF-HECG 195 (562)
Q Consensus 171 --------------Y~~l~~mvr~~GLKvqvvmsF-HqCG 195 (562)
++++++-++++||+|..=+-| |-..
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 899999999999999433333 5444
No 116
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=47.28 E-value=23 Score=38.41 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe---ee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 130 DPEILVNQLKILKSINVDGVMVD---CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
.+-.+...+++++++|.+||++. +| |+..+.+ . + .-.+++-++++++||+|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e--~--~-~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE--R--D-QIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH--H--H-HHHHHHHHHHHHhCCeEEEe
Confidence 44567788999999999999864 12 3332211 0 1 22678999999999999443
No 117
>PRK03906 mannonate dehydratase; Provisional
Probab=47.08 E-value=29 Score=37.91 Aligned_cols=51 Identities=14% Similarity=0.129 Sum_probs=38.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.|..+|++||+||....- .-.....++-..-+++-++|+++||+|-||=|+
T Consensus 15 ~l~~~rQ~G~~~iv~~l~----~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~ 65 (385)
T PRK03906 15 TLEDIRQPGATGIVTALH----DIPVGEVWPVEEILARKAEIEAAGLEWSVVESV 65 (385)
T ss_pred hHHHHhcCCCCceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 478899999999997631 111224456667888999999999999998666
No 118
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.98 E-value=1.9e+02 Score=30.26 Aligned_cols=133 Identities=17% Similarity=0.238 Sum_probs=81.1
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE---eee--eeeeecCC-CccccchhHHHHHHHHHHcCCcEEEEEeee--------
Q 008542 127 ELVDPEILVNQLKILKSINVDGVMV---DCW--WGIVEAHT-PQVYNWSGYRRLFQIVRELELKLQVVMSFH-------- 192 (562)
Q Consensus 127 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVW--WGiVE~~~-p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH-------- 192 (562)
.+-..+.|++.++.|...|.+.+++ |-+ -|.-|-.. .+.|.=+.++++.+.|++.|+.|+|-+-+=
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 5667889999999999999999976 322 34444322 678888999999999999999997754320
Q ss_pred --ccCC--CCC---CCCcCCCCh---hHHhhhccCCCeeeeCCCCCcccceeecccCcccccC---------CCchhHHH
Q 008542 193 --ECGG--NVG---DDVHIPLPQ---WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLR---------GRTAVEVY 253 (562)
Q Consensus 193 --qCGG--NVG---D~~~IpLP~---WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~---------GRTpiq~Y 253 (562)
+-.. .++ +.-++.-|. .|.+.-++--++ ...+++-+|+|+..-+. .++..+.|
T Consensus 92 ~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l~ 163 (301)
T cd06565 92 HPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HPSKYIHIGMDEAYDLGRGRSLRKHGNLGRGELY 163 (301)
T ss_pred CcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CCCCeEEECCCcccccCCCHHHHHhcCCCHHHHH
Confidence 0000 000 000111111 000000000000 11478889999987652 45667888
Q ss_pred HHHHHHHHHHHhhh
Q 008542 254 FDYMRSFRVEFNEF 267 (562)
Q Consensus 254 ~dfm~SF~~~F~~~ 267 (562)
.+|++...+...+.
T Consensus 164 ~~~~~~v~~~v~~~ 177 (301)
T cd06565 164 LEHLKKVLKIIKKR 177 (301)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888877777654
No 119
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=46.84 E-value=57 Score=33.26 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeec-CCC--ccccchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEA-HTP--QVYNWSGYRRLFQIVRELELKLQVVMSFHECG 195 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p--~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCG 195 (562)
+.+++.+++.++.+++.|++.|-+-.=++..-+ ..+ ..++-...+++++.+++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 356889999999999999999976543322111 111 2577788999999999999976 467543
No 120
>PRK14706 glycogen branching enzyme; Provisional
Probab=46.71 E-value=43 Score=38.81 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=42.8
Q ss_pred CcccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCccccchh-----------------HHHHHHHHHHcCCcEEE
Q 008542 126 CELVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQV 187 (562)
Q Consensus 126 ~~~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mvr~~GLKvqv 187 (562)
+.+-.-+.+...| ..||++||+.|++=- +.|- |...+|-+ ++++++.++++||+|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344557777777 689999999998642 4453 44445644 78999999999999943
Q ss_pred EEee
Q 008542 188 VMSF 191 (562)
Q Consensus 188 vmsF 191 (562)
=+-+
T Consensus 236 D~v~ 239 (639)
T PRK14706 236 DWVP 239 (639)
T ss_pred Eecc
Confidence 3333
No 121
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=46.67 E-value=33 Score=37.77 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.|..+|++||+||....-- + + ....++-..-.++-++|.++||+|-||=|+
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p-~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--P-NGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--C-CCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4788899999999866521 1 1 123445556788889999999999998666
No 122
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=46.63 E-value=56 Score=34.29 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeec----CCCccccchhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
+-+..++-..-..+.|++.|.||..|---+. .--..+.+....+|++.+++.|.+| +|..|.-
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~~ 96 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHSE 96 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeCC
Confidence 5577778888889999999999999975332 1125677899999999999999999 6666643
No 123
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.08 E-value=1e+02 Score=32.29 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccchh-----HHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCc
Q 008542 131 PEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWSG-----YRRLFQIVRELELKLQVVMSFHECGGNVGDDVH 203 (562)
Q Consensus 131 ~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs~-----Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~ 203 (562)
.+.+.+-++.+++.| +|.|.+|.=|-.-+...-+.|+|.- -+++++-+++.|+|+ +++.|-+=.. |
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccC--C---
Confidence 578888888998876 4888888433222221223456543 678899999999999 5566533221 0
Q ss_pred CCCChhHHhhhccCCCeeeeCCCCC
Q 008542 204 IPLPQWVMEIGQNNPEIYFTDREGR 228 (562)
Q Consensus 204 IpLP~WV~e~g~~~pDI~~tDr~G~ 228 (562)
=|. -+++++ -+.|.++.+|.
T Consensus 101 --~~~--y~e~~~-~g~~v~~~~g~ 120 (317)
T cd06599 101 --HPR--YKELKE-AGAFIKPPDGR 120 (317)
T ss_pred --CHH--HHHHHH-CCcEEEcCCCC
Confidence 122 344444 37888888775
No 124
>PRK07094 biotin synthase; Provisional
Probab=45.28 E-value=41 Score=34.65 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 135 VNQLKILKSINVDGVMVDCW---WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 46788999999999987541 111111123 578999999999999999987444333
No 125
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=45.08 E-value=2.1e+02 Score=30.35 Aligned_cols=91 Identities=8% Similarity=0.122 Sum_probs=55.5
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccc-----hhH--HHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008542 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNW-----SGY--RRLFQIVRELELKLQVVMSFHECGGNV 198 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdW-----s~Y--~~l~~mvr~~GLKvqvvmsFHqCGGNV 198 (562)
..+.+.+.+-++.+++.| +|+|.+|+=|.. .-+.|+| .-- +++++-+++.|+|+ ++..|-.-. +
T Consensus 20 y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v~-~ 92 (339)
T cd06602 20 YKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAIS-A 92 (339)
T ss_pred CCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCccc-c
Confidence 456788899999998755 688999865531 2234443 345 89999999999999 555542111 0
Q ss_pred CCCCcCCCChhHHhhhccCCCeeeeCCCCCc
Q 008542 199 GDDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 199 GD~~~IpLP~WV~e~g~~~pDI~~tDr~G~r 229 (562)
.. ..-.-+. .+++.+ -+.|.++.+|..
T Consensus 93 ~~-~~~~~~~--~~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 93 NE-PTGSYPP--YDRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred Cc-CCCCCHH--HHHHHH-CCeEEECCCCCE
Confidence 00 0000122 233443 478888888864
No 126
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=44.64 E-value=82 Score=38.20 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
+-+.+.+.|..||++||+.|-+.=-+-.... +...| ..+.++++++.++++||||..=+-+--++.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 4578999999999999999977654322111 12222 357899999999999999966666654443
No 127
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=44.63 E-value=19 Score=37.86 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCcceEEE---eee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 134 LVNQLKILKSINVDGVMV---DCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+..|++||++|++.+.. +.. -.+...-.|++..+..+.+.+++++++||++-..|=+
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 368899999999998851 111 1111122456667777899999999999998555444
No 128
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.39 E-value=48 Score=32.59 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
+...+..+++.+..+|+++|.+-+.++.. +..+......++.+++++.|+++ |+-.|-=|-.+|+
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~----~~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~ 138 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSE----EEREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKN 138 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCc----hHHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccC
Confidence 45677778999999999999888887743 24567778888999999999998 4444443433443
No 129
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=44.12 E-value=21 Score=37.20 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeec--------CCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEA--------HTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~--------~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
+..|+.||++|++.+.- +-+|. -.|++..|..|.+.++.++++|+++..-|-+
T Consensus 143 ~e~l~~Lk~aG~~~~~~----~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 143 REVLERLKEAGLDSIPG----GGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred HHHHHHHHHcCCCcCCC----CcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 78999999999996631 12332 1366779999999999999999997543333
No 130
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.88 E-value=70 Score=32.16 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=41.4
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 008542 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvm 189 (562)
.+|+.+|.=+... .. ..++-++.++++|+++|.+... .+|. .....++.+.++++|++. ++
T Consensus 74 ~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~ 134 (244)
T PRK13125 74 SVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VF 134 (244)
T ss_pred CCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EE
Confidence 4577666433321 12 3445578889999999999421 0121 234678999999999999 55
Q ss_pred eee
Q 008542 190 SFH 192 (562)
Q Consensus 190 sFH 192 (562)
..|
T Consensus 135 ~v~ 137 (244)
T PRK13125 135 FTS 137 (244)
T ss_pred EEC
Confidence 554
No 131
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=42.76 E-value=2e+02 Score=27.66 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
..+..|+.|+++||+.+.+--.+ +..++.+.+++++. .++.+.+++|
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 34778899999999988766321 12456677778887 6777777887
No 132
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.04 E-value=60 Score=34.97 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
....-..+.+|.+|.|+|.+-|+|+-=+...-+.-......++.+-|++.||-+..
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 34445577899999999999999993222111567888899999999999999844
No 133
>PRK05402 glycogen branching enzyme; Provisional
Probab=41.99 E-value=61 Score=37.93 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=40.5
Q ss_pred ccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeecCCCccccch-----------------hHHHHHHHHHHcCCcEEEEE
Q 008542 128 LVDPEILVNQL-KILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 128 ~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvvm 189 (562)
.-+-+++...| ..||++||+.|.+-=- .|. |...+|- .+++|++.|++.||+|..=+
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34557888886 9999999999976431 221 2222232 37899999999999994444
Q ss_pred ee
Q 008542 190 SF 191 (562)
Q Consensus 190 sF 191 (562)
-+
T Consensus 336 V~ 337 (726)
T PRK05402 336 VP 337 (726)
T ss_pred CC
Confidence 44
No 134
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=41.70 E-value=55 Score=32.44 Aligned_cols=82 Identities=16% Similarity=0.163 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeeccccCCCCCcchHHHHHHhcCCCC
Q 008542 424 APIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASENALPCYDREGYNKILENAKPLN 503 (562)
Q Consensus 424 ~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GENAL~~~d~~~~~qi~~~~~~~~ 503 (562)
..+.+.++++|..+.+..++..|-... ...+|+..+++|++.++.-.|-|.=.+.. ...++..+|++.++.
T Consensus 142 ~~~~~~l~~~Gy~~v~w~v~~~Dw~~~-----~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~-- 212 (224)
T TIGR02884 142 ERTLAYTKELGYYTVFWSLAFKDWKVD-----EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE-- 212 (224)
T ss_pred HHHHHHHHHcCCcEEeccccCcccCCC-----CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH--
Confidence 357889999999999999887766431 12457888999987766555655544321 134689999998863
Q ss_pred CCCCCcceeeEEeecCcc
Q 008542 504 DPDGRHLSAFTYLRLSPV 521 (562)
Q Consensus 504 ~~~~~~~~~FTylRm~~~ 521 (562)
.+|+|.++.+.
T Consensus 213 -------~Gy~fvtl~el 223 (224)
T TIGR02884 213 -------QGYTFKSLDDL 223 (224)
T ss_pred -------CCCEEEEhHHc
Confidence 36788887654
No 135
>PRK08508 biotin synthase; Provisional
Probab=41.68 E-value=33 Score=35.18 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------cccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
+.+|++||++|++.+.++ +|. ++. --+|....+.++.+++.|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 778999999999999986 554 331 246777888888999999988443333
No 136
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.52 E-value=1.2e+02 Score=31.19 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhh
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g 214 (562)
..+|+.....||+.|.+-+ ...+++...+.++.+|+.|+++.+-+.. ..-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 3467788899999999865 1237889999999999999998766555 1113467776542
Q ss_pred ----ccCCC-eeeeCCCCCccc
Q 008542 215 ----QNNPE-IYFTDREGRRNS 231 (562)
Q Consensus 215 ----~~~pD-I~~tDr~G~rn~ 231 (562)
+.-+| |.+.|-.|.-++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCH
Confidence 22233 667777776544
No 137
>PRK09936 hypothetical protein; Provisional
Probab=41.46 E-value=50 Score=35.24 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccch----hHHHHHHHHHHcCCcEEEEEee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS----GYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs----~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+++|+.-++++|.+|++-+.|- | .-- +++ ||. +..++++.+++.||||++=|-|
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-W-t~y-G~~----~fg~~~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-W-TRY-GDA----DFGGQRGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-e-eec-cCC----CcccchHHHHHHHHHHHHcCCEEEEcccC
Confidence 67899999999999999999885 3 222 111 443 5678999999999999554444
No 138
>PRK04326 methionine synthase; Provisional
Probab=41.46 E-value=50 Score=34.24 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhH
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 210 (562)
+++...+++|+++|++.|.+|.= |.. .+. ++..+.+.++.+-+ +++.. ...|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHH-
Confidence 46778889999999999999873 543 222 33444455544443 44543 35699988752 111
Q ss_pred HhhhccCCCeeeeCCC
Q 008542 211 MEIGQNNPEIYFTDRE 226 (562)
Q Consensus 211 ~e~g~~~pDI~~tDr~ 226 (562)
-...+.+-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1123455566666554
No 139
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=41.31 E-value=57 Score=33.74 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEe
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMS 190 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvms 190 (562)
...+++-|+..|++|++.|+|. .+--...=.-..++++++++.|||+.+=+.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEecccc
Confidence 3688899999999999999884 233344556678899999999999965443
No 140
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=41.00 E-value=73 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+.+++.+.+++||+ ++|-|.+-.=||.=....| ...-+++++-+-+.|..+ |++-|
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H 213 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHH 213 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCC
Confidence 46789999999998 7999999999997432223 223356666666689887 88888
No 141
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=40.15 E-value=30 Score=35.75 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 008542 134 LVNQLKILKSINVDGVM-VD--CW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~-vd--VW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvm 189 (562)
.+..|++||++|++.+. +. .. -.+-..-.|++..|..+.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999774 11 11 11111223778899999999999999999984333
No 142
>PLN02960 alpha-amylase
Probab=39.66 E-value=81 Score=38.32 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=41.2
Q ss_pred cCHHHHH-HHHHHHHHcCcceEEEeeeeeeeecCCCccccchh-----------------HHHHHHHHHHcCCcEEEEEe
Q 008542 129 VDPEILV-NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSG-----------------YRRLFQIVRELELKLQVVMS 190 (562)
Q Consensus 129 ~~~~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mvr~~GLKvqvvms 190 (562)
-.-+++. ..|..||++||+.|.+- .+.|- ++..+|-+ +++|++.+++.||+| ||-
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--ILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EEE
Confidence 3556776 45999999999999874 34442 44444544 899999999999999 555
Q ss_pred e
Q 008542 191 F 191 (562)
Q Consensus 191 F 191 (562)
+
T Consensus 486 v 486 (897)
T PLN02960 486 I 486 (897)
T ss_pred e
Confidence 4
No 143
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.48 E-value=68 Score=32.85 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred CccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEE
Q 008542 110 YVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 110 ~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvm 189 (562)
.+|+..|+=.+.| -.-.+++-++.++++||+||.+.- |+ .+.-.++++.++++||+...++
T Consensus 87 ~~plv~m~Y~Npi-------~~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLI-------FRKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHH-------hhhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEE
Confidence 3566566544432 134778889999999999999873 22 2456789999999999996555
Q ss_pred ee
Q 008542 190 SF 191 (562)
Q Consensus 190 sF 191 (562)
+-
T Consensus 148 ~P 149 (256)
T TIGR00262 148 AP 149 (256)
T ss_pred CC
Confidence 54
No 144
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=38.90 E-value=4.3e+02 Score=27.46 Aligned_cols=132 Identities=11% Similarity=0.223 Sum_probs=80.7
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeee----eee--------eec-------CCCccccchhHHHHHHHHHHcCCcEE
Q 008542 126 CELVDPEILVNQLKILKSINVDGVMVDCW----WGI--------VEA-------HTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
..+...+.|++.+..|...+.+.+.+-.= |-+ .|. ...+.|.=+-.+++++.|++.|+.|+
T Consensus 10 R~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~vi 89 (303)
T cd02742 10 RHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVI 89 (303)
T ss_pred ccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEE
Confidence 35678899999999999999888755433 422 111 12457888999999999999999997
Q ss_pred EEEee--ec-----------cCC-------CCCCCCcCCCCh---hHHhhhccCCCeeeeCCCCCcccceeecccCcccc
Q 008542 187 VVMSF--HE-----------CGG-------NVGDDVHIPLPQ---WVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERV 243 (562)
Q Consensus 187 vvmsF--Hq-----------CGG-------NVGD~~~IpLP~---WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pv 243 (562)
|-+-+ |. |.. ..-+.-++.-|. .+.+.-++--++| ..+|+-+|.|+.+.
T Consensus 90 PEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------~~~~iHiGgDE~~~ 161 (303)
T cd02742 90 PEIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------PDRYLHIGGDEAHF 161 (303)
T ss_pred EeccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC--------CCCeEEecceecCC
Confidence 76533 10 000 000011111111 1111111101111 24789999999764
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhh
Q 008542 244 LRGRTAVEVYFDYMRSFRVEFNEF 267 (562)
Q Consensus 244 l~GRTpiq~Y~dfm~SF~~~F~~~ 267 (562)
. .++.+.|..|++...+...+.
T Consensus 162 ~--~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 162 K--QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHc
Confidence 4 577888988888888777765
No 145
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=38.78 E-value=53 Score=38.99 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHH----HHHHHcCCcEEEEEeeeccCCCCCCCCcCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~----~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpL 206 (562)
.+++..++.|.++|+.-|-||.= |. |...-..-+|..|.+.+ +++. .|++-..-+++|-|-||..+ | +
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~~-~~v~~~~~I~~H~C~gnf~~---I-~ 658 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRITN-CGVQDTTQIHTHMCYSNFND---I-I 658 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEEecCCcHH---H-H
Confidence 46788889999999999999976 52 33222346777666554 4443 45543445788999998654 1 2
Q ss_pred ChhHHhhhccCCCeeeeCCC
Q 008542 207 PQWVMEIGQNNPEIYFTDRE 226 (562)
Q Consensus 207 P~WV~e~g~~~pDI~~tDr~ 226 (562)
| .+.+-+-|.++.|-+
T Consensus 659 ~----~i~~l~~D~~~~E~~ 674 (766)
T PLN02475 659 H----SIIDMDADVITIENS 674 (766)
T ss_pred H----HHHhCCCCEEEEEcC
Confidence 2 234566777776533
No 146
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.99 E-value=1.9e+02 Score=29.10 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc--cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP 207 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP 207 (562)
|...++++|++|+++|+|-+.+|| -+|+| |.+.=-+.++.+|+..-++ .+..|-- +.=|
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~Dv--------mDG~Fvpn~tfg~~~i~~i~~~~~~~--~~dvHLM---------v~~p 70 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDV--------MDNHYVPNLTFGAPICKALRDYGITA--PIDVHLM---------VKPV 70 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec--------ccCcccCccccCHHHHHHHHHhCCCC--CEEEEec---------cCCH
Confidence 678999999999999999999998 36666 4555556666777653122 2444522 2223
Q ss_pred h-hHHhhhccCCCeeeeCCCCCccc-cee----ecccCcccccCCCchhHHHHHHHH
Q 008542 208 Q-WVMEIGQNNPEIYFTDREGRRNS-ECL----TWGIDKERVLRGRTAVEVYFDYMR 258 (562)
Q Consensus 208 ~-WV~e~g~~~pDI~~tDr~G~rn~-E~l----Sl~~D~~pvl~GRTpiq~Y~dfm~ 258 (562)
. |+..-.+..+|++..--+=..+. +.| ..|+----+|.--||++.+..+..
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 3 55554556667665444422221 222 244433345677899999876654
No 147
>PRK15108 biotin synthase; Provisional
Probab=37.88 E-value=3.7e+02 Score=28.75 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
+++.+.+..+.+++.|+.-|.+-.=| + .|-.-++.+|.++++.+++.|+++ ++|.
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s~ 131 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMTL 131 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEeC
Confidence 55788888889999999998653323 1 354567899999999999998865 4443
No 148
>PRK06256 biotin synthase; Validated
Probab=37.87 E-value=36 Score=35.35 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc-------cccchhHHHHHHHHHHcCCcEE
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ-------VYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
+..++.||++|++.|.+. +|. .+. ..+|..+.+.++.++++|+++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 356788999999999774 354 322 2478888899999999999873
No 149
>PRK15452 putative protease; Provisional
Probab=37.36 E-value=35 Score=37.92 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEee
Q 008542 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDC 153 (562)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV 153 (562)
..+++|||.+|.-. .+ .+-+.+...|+.|+++|||||.|.-
T Consensus 57 ~~g~kvyvt~n~i~--~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 57 ALGKKFYVVVNIAP--HN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HcCCEEEEEecCcC--CH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 35689999998433 22 2346788889999999999999853
No 150
>PRK13753 dihydropteroate synthase; Provisional
Probab=37.29 E-value=4e+02 Score=28.22 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=60.8
Q ss_pred eeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc------cchhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 121 IIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NWSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 121 ~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
..+++|...+.+...+..+.|-+.|+|-|-|.- |+..|+-= +|.--..+++.+++.+.. +|.
T Consensus 14 SFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGg-----eSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~----ISI--- 81 (279)
T PRK13753 14 SFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGP-----AASHPDARPVSPADEIRRIAPLLDALSDQMHR----VSI--- 81 (279)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc----EEE---
Confidence 345567777888888888889999999998873 55556532 466666777888876533 333
Q ss_pred CCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccC-cccc
Q 008542 195 GGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGID-KERV 243 (562)
Q Consensus 195 GGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D-~~pv 243 (562)
|+.+-..=.-.++.|. | +.-|-+|-.+++-+..-.+ ..|+
T Consensus 82 -----DT~~~~va~~al~aGa---d-iINDVsg~~d~~~~~vva~~~~~v 122 (279)
T PRK13753 82 -----DSFQPETQRYALKRGV---G-YLNDIQGFPDPALYPDIAEADCRL 122 (279)
T ss_pred -----ECCCHHHHHHHHHcCC---C-EEEeCCCCCchHHHHHHHHcCCCE
Confidence 3333222233333443 2 4666677655544443323 3444
No 151
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=37.04 E-value=4e+02 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+++.+.+-|++|.++|...|-+|+.- .|+ +.++=.+.+.+++.++++|=++ +++.+
T Consensus 62 ~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~---~~~~~~~D~~la~al~~~~~~v--vl~~~ 117 (310)
T PF05226_consen 62 PRSVYARLLDRLAAAGAKAIGFDILF--DEP---DPSNPEGDQALAEALRRAGNRV--VLASV 117 (310)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEeee--cCC---CCCCchHHHHHHHHHHhCCCeE--EEEEe
Confidence 67889999999999999999999954 343 1111127888999999998777 56644
No 152
>PRK08445 hypothetical protein; Provisional
Probab=36.94 E-value=41 Score=35.92 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCcceEE---Eeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 134 LVNQLKILKSINVDGVM---VDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+..|++||++|++-+. +... -.+-+.-.|++-.-..|.+..+.++++||++-.-|=|
T Consensus 143 ~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 143 IKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 37899999999999543 3322 1122233366777777899999999999999666555
No 153
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=36.66 E-value=90 Score=33.29 Aligned_cols=90 Identities=20% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhc
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQ 215 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~ 215 (562)
.+|+...+.||+.|.|-.-+... ..-.+.++.+|+.|+++.+.+.. ..-.-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 56888999999999987643332 24589999999999999876664 12235566655422
Q ss_pred ----cCCC-eeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHH
Q 008542 216 ----NNPE-IYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEF 264 (562)
Q Consensus 216 ----~~pD-I~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F 264 (562)
.-+| |.++|-.|. -||-+++ ++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~------------------~~P~~v~-~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGA------------------LLPEDVR-DRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCC------------------CCHHHHH-HHHHHHHHhc
Confidence 2233 566777664 3666655 4556666544
No 154
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=36.20 E-value=93 Score=32.94 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChh
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQW 209 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~W 209 (562)
+.+...+.|+.+|++|+.. +||. .|.-+-=. =..|.++.++.|+.|++.=.||. ....|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GRd-~~~l~~is~~tGv~II~~TG~y~---------~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGRD-VEALREISRRTGVNIIASTGFYK---------EPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-S---------GGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCcC-HHHHHHHHHHhCCeEEEeCCCCc---------cccCChh
Confidence 6788999999999999876 4665 34322211 27788899999999955555552 2346788
Q ss_pred HH
Q 008542 210 VM 211 (562)
Q Consensus 210 V~ 211 (562)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 155
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=36.05 E-value=38 Score=35.86 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCcceEE-E--eee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 134 LVNQLKILKSINVDGVM-V--DCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~-v--dVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+..|++||++|++.+- . ... --+...-.|++..|.-+.+.++.++++|+++-.-|=+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 46679999999999775 1 111 1111222366778889999999999999999554444
No 156
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=35.76 E-value=94 Score=31.21 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=48.4
Q ss_pred EeeccceeeCCCcccCHHHHHHHHHHHH-----HcCcc----eEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 115 VMLPLGIIDMNCELVDPEILVNQLKILK-----SINVD----GVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 115 VMLPLd~V~~~~~~~~~~~~~~~L~~LK-----~~GVd----GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
+++|-+.|. +|.+.|.++.+.-|++|+ .+|.. .|.|+.|+.-+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 455656554 688899999999999998 34543 4677888877776 57889999999999
Q ss_pred EEEEe
Q 008542 186 QVVMS 190 (562)
Q Consensus 186 qvvms 190 (562)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 65543
No 157
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=35.47 E-value=75 Score=32.95 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcc------ccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV------YNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIP 205 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~Ip 205 (562)
+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.++.+- .+... .+++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH---
Confidence 57888999999999999999976 2222211111 12332222222221 24444 569999999853221
Q ss_pred CChhHHhhhccCCCeeeeCCCCCc
Q 008542 206 LPQWVMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 206 LP~WV~e~g~~~pDI~~tDr~G~r 229 (562)
-...+.+-|.++-+-+..+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2334667787776555544
No 158
>PLN02540 methylenetetrahydrofolate reductase
Probab=35.32 E-value=86 Score=36.20 Aligned_cols=74 Identities=12% Similarity=0.168 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH---HcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCC-----CCCCCc
Q 008542 132 EILVNQLKILK---SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGN-----VGDDVH 203 (562)
Q Consensus 132 ~~~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGN-----VGD~~~ 203 (562)
..++.+|..|| ++|+|.+..-. -||-..|.+..+.||+.|+++-++...--+..= .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiITQl-----------fFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIITQL-----------FYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEeecc-----------ccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 34556777766 59999987543 589999999999999999666444433221110 001256
Q ss_pred CCCChhHHhhhcc
Q 008542 204 IPLPQWVMEIGQN 216 (562)
Q Consensus 204 IpLP~WV~e~g~~ 216 (562)
|.+|.|+.+.-++
T Consensus 222 i~IP~~i~~rLe~ 234 (565)
T PLN02540 222 TKIPAEITAALEP 234 (565)
T ss_pred CcCCHHHHHHHHh
Confidence 8899999986543
No 159
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=35.01 E-value=9.3 Score=40.07 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=26.9
Q ss_pred eeeEEeecCccccCC-CChhHHHHHHHHhcCC
Q 008542 511 SAFTYLRLSPVLTDG-HNFIEFERFVKRMHGE 541 (562)
Q Consensus 511 ~~FTylRm~~~lf~~-~n~~~F~~FVr~m~~~ 541 (562)
.=||.+|||.+++.| .+|..+..|++.|..-
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek~ 127 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEKV 127 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhee
Confidence 359999999999999 5799999999998653
No 160
>TIGR03586 PseI pseudaminic acid synthase.
Probab=34.44 E-value=89 Score=33.50 Aligned_cols=70 Identities=19% Similarity=0.314 Sum_probs=44.1
Q ss_pred cEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCc---------------------cccc
Q 008542 112 PVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQ---------------------VYNW 168 (562)
Q Consensus 112 pvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~---------------------~YdW 168 (562)
|+||-+-+++ |.+| +-+...+-.++.|++|+|.|-.--| =.++.+..+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 3455555553 3444 3456666677889999999877664 1111111111 2236
Q ss_pred hhHHHHHHHHHHcCCcE
Q 008542 169 SGYRRLFQIVRELELKL 185 (562)
Q Consensus 169 s~Y~~l~~mvr~~GLKv 185 (562)
.+|.+|++.+++.||.+
T Consensus 77 e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 77 EWHKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 77889999999999997
No 161
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=34.38 E-value=53 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCcceEEE-eee-eeee
Q 008542 134 LVNQLKILKSINVDGVMV-DCW-WGIV 158 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~v-dVW-WGiV 158 (562)
.-.-|+.||++||..|++ +|+ ++-|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 446788999999999985 666 6654
No 162
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=33.74 E-value=29 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=20.8
Q ss_pred eCCCCCcccceee-cccCcccccCCCchh
Q 008542 223 TDREGRRNSECLT-WGIDKERVLRGRTAV 250 (562)
Q Consensus 223 tDr~G~rn~E~lS-l~~D~~pvl~GRTpi 250 (562)
.....+-+.|-|+ |++|+.+-++|||.+
T Consensus 107 v~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 107 STIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEcCCCcChhheeeecCCCCcccccceee
Confidence 4444555568888 588888899999975
No 163
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=33.74 E-value=71 Score=31.23 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
...++.-|+..+++|.+||++.. +..... +.+-.+++-+.+++.||++-
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEE
Confidence 45788999999999999999987 222222 22238999999999999983
No 164
>PRK00957 methionine synthase; Provisional
Probab=32.92 E-value=1.6e+02 Score=30.31 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhH
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWV 210 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV 210 (562)
+++...+++|+++|++.|.+|.= |.. +-.+++...+.++.+.+ ++++ ....|-||+ . -|.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG~-~-------~~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCGD-V-------SNII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECCC-c-------HHHH-
Confidence 46677888999999999999863 553 12234444455554443 3344 346799953 2 1212
Q ss_pred HhhhccCCCeeeeCCCCCc
Q 008542 211 MEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 211 ~e~g~~~pDI~~tDr~G~r 229 (562)
-...+.+-|.+.-|-.|.+
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 2223566788888876553
No 165
>PRK15108 biotin synthase; Provisional
Probab=32.90 E-value=68 Score=34.18 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccc-------cchhHHHHHHHHHHcCCcE
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------NWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------dWs~Y~~l~~mvr~~GLKv 185 (562)
+..|++||++|||.+.++. |. .|+.| +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 7789999999999988854 32 22222 5666677777788889876
No 166
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=32.83 E-value=2.2e+02 Score=29.34 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
...+||.+..-.++ +..-+..+..+++|+|+|++ +=+ ---+.+-.+..+.|+-+.++ .+ .|
T Consensus 67 ~~~~pvi~gv~~~t----------~~~i~~a~~a~~~Gad~v~~------~pP-~y~~~~~~~i~~~f~~v~~~-~~-~p 127 (289)
T cd00951 67 AGRVPVLAGAGYGT----------ATAIAYAQAAEKAGADGILL------LPP-YLTEAPQEGLYAHVEAVCKS-TD-LG 127 (289)
T ss_pred CCCCCEEEecCCCH----------HHHHHHHHHHHHhCCCEEEE------CCC-CCCCCCHHHHHHHHHHHHhc-CC-CC
Q ss_pred EEeeeccCCCCCCCCcCCCChhHHhhhccCCCe-eeeCCCCCccc--ceeecccCcccccCC
Q 008542 188 VMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEI-YFTDREGRRNS--ECLTWGIDKERVLRG 246 (562)
Q Consensus 188 vmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI-~~tDr~G~rn~--E~lSl~~D~~pvl~G 246 (562)
||-++ +-| .+++ |.=+.+..+++|.| -++|.+|.-.. +++...-|+..||.|
T Consensus 128 i~lYn-~~g-----~~l~-~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~~~~~~~~v~~G 182 (289)
T cd00951 128 VIVYN-RAN-----AVLT-ADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGG 182 (289)
T ss_pred EEEEe-CCC-----CCCC-HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEeC
No 167
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=32.75 E-value=31 Score=34.29 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=15.8
Q ss_pred ccchhHHHHHHHHHHcCCcE
Q 008542 166 YNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 166 YdWs~Y~~l~~mvr~~GLKv 185 (562)
|+|+.|+.+++.+|+.||+|
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipv 105 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPV 105 (213)
T ss_dssp --GGGTHHHHHHHHTSS--E
T ss_pred CchHHHHHHHHHHHHCCCCE
Confidence 57999999999999999998
No 168
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.65 E-value=77 Score=34.13 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ecC-----CCcccc----chhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIV-EAH-----TPQVYN----WSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiV-E~~-----~p~~Yd----Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
+++++.+++|.++|++.|-+|.= |+.. ... .....+ =..|.++++.+-+ |++--..+++|-|-||..
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 47788889999999999999976 7642 110 001011 1233355554443 664444789999999863
No 169
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.60 E-value=61 Score=33.62 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=52.7
Q ss_pred CCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 108 TPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 108 ~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
..+|+||-+-.|--+- .-...++.-|+.+|++|++.|+|.. +--...=.-..++++++++.|||+.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3567777776665442 1256899999999999999999853 33333445677899999999999955
Q ss_pred EEeeeccCCCCCCCCcCCCChhHHhh
Q 008542 188 VMSFHECGGNVGDDVHIPLPQWVMEI 213 (562)
Q Consensus 188 vmsFHqCGGNVGD~~~IpLP~WV~e~ 213 (562)
=..-. +.+.+...++..|+..+
T Consensus 132 EvG~K----~~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKK----DPESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-S----SHHHHTT--CCHHHHHH
T ss_pred cccCC----CchhcccCCHHHHHHHH
Confidence 44421 11222223366787654
No 170
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=32.52 E-value=1.8e+02 Score=30.51 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHHc--CcceEEEee-eeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 129 VDPEILVNQLKILKSI--NVDGVMVDC-WWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~--GVdGV~vdV-WWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
.+.+.+.+-++.+++. -+|.|.+|. ||+ ..+-+.|+|+ --+++++-+++.|+|| |+..|-. |.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv--~~~i~P~---v~- 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAEL--MISIWPT---FG- 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEE--EEEecCC---cC-
Confidence 4778899999999886 679999996 553 1111256665 5789999999999999 4455411 11
Q ss_pred CCcCCCChhHHhhhccCCCeeeeCCCCCcc
Q 008542 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRRN 230 (562)
Q Consensus 201 ~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn 230 (562)
..-+. -+++++ .+.++++..|...
T Consensus 92 ---~~~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 92 ---PETEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred ---CCChh--HHHHHH-CCEEEEcCCCCee
Confidence 11122 234444 4889999887743
No 171
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=32.23 E-value=1.2e+02 Score=30.18 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.++..|..+.++|+++|.+ |.+-.....+..++=...+++-++++++||++
T Consensus 11 ~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 5788999999999999998 33322221122233345888999999999985
No 172
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=31.89 E-value=1.3e+02 Score=32.05 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhh
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIG 214 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g 214 (562)
..+|+...+.||+.|.|-.-+.-. .--++.++.+|+.|+++++.+.. ..-.-|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHH
Confidence 357899999999999987743322 24689999999999998765543 1123455555432
Q ss_pred c----cCCC-eeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHh
Q 008542 215 Q----NNPE-IYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFN 265 (562)
Q Consensus 215 ~----~~pD-I~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~ 265 (562)
+ .-+| |.++|-.|. -||.+++ +..+.+++++.
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~------------------~~P~~v~-~~v~~l~~~l~ 186 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGA------------------MLPDDVR-DRVRALKAVLK 186 (333)
T ss_pred HHHHhcCCCEEEEccCCCC------------------CCHHHHH-HHHHHHHHhCC
Confidence 2 2233 556666664 2555544 55666665543
No 173
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=31.53 E-value=1.6e+02 Score=29.01 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+.+.+.+.+++||+. +|-|.+-.=||.-....|. +.-+++++.+-+.|..+ |++-|
T Consensus 160 ~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H 215 (239)
T cd07381 160 DLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHH 215 (239)
T ss_pred CHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCC
Confidence 568899999999988 9999999999974322232 23356666666789888 88888
No 174
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=31.45 E-value=1.3e+02 Score=32.30 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=62.9
Q ss_pred eeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 121 IIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 121 ~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
+|...+.....+++++.++.|+..|.+.|--..=|...+.-+.- +=+--.+|-++..+-..|+ |||.= | |.
T Consensus 15 iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~r--G---Gy 85 (313)
T COG1619 15 IIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCVR--G---GY 85 (313)
T ss_pred EEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEcc--c---CC
Confidence 34433444468899999999999998877766555444331111 0122445666677677777 99993 3 44
Q ss_pred CCcCCCChhHHhhhccCCCeee
Q 008542 201 DVHIPLPQWVMEIGQNNPEIYF 222 (562)
Q Consensus 201 ~~~IpLP~WV~e~g~~~pDI~~ 222 (562)
.++==||-|-.+..+++|-||+
T Consensus 86 gs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 86 GSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred ChhhhhhhcchHHHhcCCceEE
Confidence 5665699999988999999886
No 175
>PRK12568 glycogen branching enzyme; Provisional
Probab=31.26 E-value=1.1e+02 Score=36.27 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=41.0
Q ss_pred ccCHHHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCccccc-----------------hhHHHHHHHHHHcCCcEEEEE
Q 008542 128 LVDPEILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVVM 189 (562)
Q Consensus 128 ~~~~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mvr~~GLKvqvvm 189 (562)
..+.+.+... |..||++||+.|.+-= +.|. |...+| ..++++++.++++||+|..=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4466788777 5999999999997632 1221 222233 358999999999999994444
Q ss_pred ee
Q 008542 190 SF 191 (562)
Q Consensus 190 sF 191 (562)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 44
No 176
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=30.44 E-value=6.2e+02 Score=27.27 Aligned_cols=127 Identities=20% Similarity=0.302 Sum_probs=86.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeee--eeeeec----------CCCccccchhHHHHHHHHHHcCCcEEE-EEeeecc
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCW--WGIVEA----------HTPQVYNWSGYRRLFQIVRELELKLQV-VMSFHEC 194 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~----------~~p~~YdWs~Y~~l~~mvr~~GLKvqv-vmsFHqC 194 (562)
..+++.+++-|+.+|+.|++.|.|||= +|.|== ..-..+ =.-.+++++.+++.|+-+++ |.+|
T Consensus 9 a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~F--- 84 (316)
T PF13200_consen 9 AGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVF--- 84 (316)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEe---
Confidence 457789999999999999999999996 665521 111112 35678899999999999877 4455
Q ss_pred CCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCccc--ceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCce
Q 008542 195 GGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNS--ECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGI 272 (562)
Q Consensus 195 GGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~--E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~v 272 (562)
-|+. | .+++||..+....|..=. +-.+ |+|- -.+.-.+|.-..+.+-+.. |
T Consensus 85 ----kD~~---l-------a~~~pe~av~~~~G~~w~d~~~~~-WvnP--------~~~evw~Y~i~IA~Eaa~~-G--- 137 (316)
T PF13200_consen 85 ----KDPV---L-------AEAHPEWAVKTKDGSVWRDNEGEA-WVNP--------YSKEVWDYNIDIAKEAAKL-G--- 137 (316)
T ss_pred ----cChH---H-------hhhChhhEEECCCCCcccCCCCCc-cCCC--------CCHHHHHHHHHHHHHHHHc-C---
Confidence 2332 1 245777777666664322 2222 3332 1678889999999998865 5
Q ss_pred EEEEEeeccCCCCCCCCC
Q 008542 273 IAEIEVGLGPCGELRYPT 290 (562)
Q Consensus 273 I~eI~VGLGP~GELRYPS 290 (562)
+.||+.= =+|||.
T Consensus 138 FdEIqfD-----YIRFP~ 150 (316)
T PF13200_consen 138 FDEIQFD-----YIRFPD 150 (316)
T ss_pred CCEEEee-----eeecCC
Confidence 6777652 467777
No 177
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=30.25 E-value=1e+02 Score=36.87 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred cccCHHHH-HHHHHHHHHcCcceEEEeeeeeeeecCCCccccc-----------------hhHHHHHHHHHHcCCcEEEE
Q 008542 127 ELVDPEIL-VNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-----------------SGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 127 ~~~~~~~~-~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mvr~~GLKvqvv 188 (562)
.+..-+++ +..|..||++||+.|.+-- +.|. +....| ..+++|++.++++||+|..=
T Consensus 245 ~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 245 KVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34445565 5669999999999998642 2232 111123 44899999999999999544
Q ss_pred Eee-ecc
Q 008542 189 MSF-HEC 194 (562)
Q Consensus 189 msF-HqC 194 (562)
+-+ |.|
T Consensus 320 vV~nH~~ 326 (758)
T PLN02447 320 VVHSHAS 326 (758)
T ss_pred ecccccc
Confidence 444 443
No 178
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.23 E-value=4.3e+02 Score=27.38 Aligned_cols=130 Identities=17% Similarity=0.109 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHH------------------HHHHHHHcCCcEEEEEee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRR------------------LFQIVRELELKLQVVMSF 191 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~------------------l~~mvr~~GLKvqvvmsF 191 (562)
+++.+...++.+++.|+++|.+.+--- +++ ....|.-.++ .+..+.++|.+. +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~---I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADG---IVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCE---EEE
Confidence 567788888999999999998866421 121 1134432222 233344455554 234
Q ss_pred eccCCCCCCCCcCCCChhHHhhhccCC-CeeeeCCCCCccc----ceeecccCcccccCCCchhH--------HHHHHHH
Q 008542 192 HECGGNVGDDVHIPLPQWVMEIGQNNP-EIYFTDREGRRNS----ECLTWGIDKERVLRGRTAVE--------VYFDYMR 258 (562)
Q Consensus 192 HqCGGNVGD~~~IpLP~WV~e~g~~~p-DI~~tDr~G~rn~----E~lSl~~D~~pvl~GRTpiq--------~Y~dfm~ 258 (562)
|.+||-..|. .++....+.++.+.-+ +|-..=.-|-++. ++|.+|+|-+ .-||--+. --.++++
T Consensus 200 ~~~gG~~~~~-g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V--~ig~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLDG-APATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAV--LIGRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCCC-CcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEE--EEcHHHHHHHHhcCHHHHHHHHH
Confidence 4556654332 2333344555544322 4555555566555 7888999973 33543332 2246777
Q ss_pred HHHHHHhhhhc
Q 008542 259 SFRVEFNEFFV 269 (562)
Q Consensus 259 SF~~~F~~~~~ 269 (562)
.+++++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 78777776653
No 179
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.22 E-value=92 Score=36.84 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=63.0
Q ss_pred CCCCCCCcCCC-CCCCccEEEeeccceeeCCCcccCHHHHHHH--HHHHHHcCcceEEE-eeeeeeeecC---CCccccc
Q 008542 96 LPPKLPERDFA-GTPYVPVYVMLPLGIIDMNCELVDPEILVNQ--LKILKSINVDGVMV-DCWWGIVEAH---TPQVYNW 168 (562)
Q Consensus 96 ~~~~~~~~~~~-~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~--L~~LK~~GVdGV~v-dVWWGiVE~~---~p~~YdW 168 (562)
|.=.+|-++|+ ..+.||--.- |.+ .+|... |..||++||..|++ +|..-+-|+. ....|+|
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~r---------GTy---~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~W 240 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELR---------GTY---LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNW 240 (697)
T ss_pred EEEEeeecccccCCCCCchhhc---------cce---ehhccccHHHHHHHhCCceEEEecceEEecccccccccccccc
Confidence 44456778888 6676663221 111 233333 99999999999985 7775555543 3567888
Q ss_pred h------------------------hHHHHHHHHHHcCCcEEEEEee-eccCCCCCCCCcCCCC
Q 008542 169 S------------------------GYRRLFQIVRELELKLQVVMSF-HECGGNVGDDVHIPLP 207 (562)
Q Consensus 169 s------------------------~Y~~l~~mvr~~GLKvqvvmsF-HqCGGNVGD~~~IpLP 207 (562)
- .++++++-++++||-|+-=+=| |-+.||.- -++.++.
T Consensus 241 GYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~-g~t~~f~ 303 (697)
T COG1523 241 GYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL-GPTLSFR 303 (697)
T ss_pred CCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc-Ccccccc
Confidence 4 4788888889999999333333 77766521 2445443
No 180
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.06 E-value=1.3e+02 Score=32.42 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=50.0
Q ss_pred cceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeee
Q 008542 119 LGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 119 Ld~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+-+|.--|.+.+++++..--+.||++|.+.+...+| +..-.-|.|. +++-|.+.+++.||.+ +-..|
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 334455678889999999999999999997766666 2222235555 4999999999999999 55554
No 181
>PRK12677 xylose isomerase; Provisional
Probab=29.97 E-value=1.1e+02 Score=33.17 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 133 ILVNQLKILKSINVDGVMVDC---W-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdV---W-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
.++.-+++++++|++||++.. | |+.-+. ..+ ...+++-++++++||+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeE
Confidence 578889999999999998831 2 322211 011 247889999999999983
No 182
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=29.91 E-value=45 Score=34.33 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 008542 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (562)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWG 156 (562)
++++.....+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 356666677777777777 8999999999955
No 183
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.73 E-value=1.5e+02 Score=29.56 Aligned_cols=52 Identities=21% Similarity=-0.018 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHc-CCcE
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL-ELKL 185 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~-GLKv 185 (562)
..|+..|+.+|++|.++|++.+=...-.. .+. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 57889999999999999998763210000 000 0115788899999999 6665
No 184
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.72 E-value=2.4e+02 Score=29.97 Aligned_cols=63 Identities=10% Similarity=0.238 Sum_probs=41.0
Q ss_pred ccCHHHHHHHHHHHHHcCc--ceEEEeee--------eee---eecCC--C---ccccc------hhHHHHHHHHHHcCC
Q 008542 128 LVDPEILVNQLKILKSINV--DGVMVDCW--------WGI---VEAHT--P---QVYNW------SGYRRLFQIVRELEL 183 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GV--dGV~vdVW--------WGi---VE~~~--p---~~YdW------s~Y~~l~~mvr~~GL 183 (562)
..+.+.+..-++.+++.|+ |+|.+|.| |.. ++..+ + +.++| --.+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 3477889999999999875 88999842 111 11111 1 12222 246899999999999
Q ss_pred cEEEEEeee
Q 008542 184 KLQVVMSFH 192 (562)
Q Consensus 184 KvqvvmsFH 192 (562)
|+ ++..|
T Consensus 100 kv--~l~v~ 106 (340)
T cd06597 100 KV--LLWQI 106 (340)
T ss_pred EE--EEEec
Confidence 99 54443
No 185
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=29.46 E-value=47 Score=39.95 Aligned_cols=67 Identities=28% Similarity=0.483 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHHH-----HHcC---cceEEEeeeeeeeecCCCccc---cchhHH---HHHHHHHHcCCcEEEEEeeec
Q 008542 128 LVDPEILVNQLKIL-----KSIN---VDGVMVDCWWGIVEAHTPQVY---NWSGYR---RLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 128 ~~~~~~~~~~L~~L-----K~~G---VdGV~vdVWWGiVE~~~p~~Y---dWs~Y~---~l~~mvr~~GLKvqvvmsFHq 193 (562)
|.+...+-.+|-.| -.+| +.-||+. .=-+..++-| +|.-|+ +|+++++++|.+++ =||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEcc
Confidence 44555555554332 2244 7888884 3344445555 799886 58999999999985 4999
Q ss_pred cCCCCCCC
Q 008542 194 CGGNVGDD 201 (562)
Q Consensus 194 CGGNVGD~ 201 (562)
-||.||-.
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999975
No 186
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=29.46 E-value=5.3e+02 Score=27.08 Aligned_cols=83 Identities=14% Similarity=0.315 Sum_probs=54.8
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeecCCCccccch-----hHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 128 LVDPEILVNQLKILKSIN--VDGVMVDCWWGIVEAHTPQVYNWS-----GYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|+ --+++++-+++.|+|+.++ .|
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~--~~-------- 85 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTI--VD-------- 85 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEE--ee--------
Confidence 346788888899998865 58899996552 1 23455554 4788999999999998444 43
Q ss_pred CCcCCC----ChhHHhhhccCCCeeeeCCCCC
Q 008542 201 DVHIPL----PQWVMEIGQNNPEIYFTDREGR 228 (562)
Q Consensus 201 ~~~IpL----P~WV~e~g~~~pDI~~tDr~G~ 228 (562)
+.|.. |.+ +++.+ .+.|.++.+|.
T Consensus 86 -P~i~~~~~~~~~--~~~~~-~~~~v~~~~g~ 113 (317)
T cd06600 86 -PGIRVDQNYSPF--LSGMD-KGKFCEIESGE 113 (317)
T ss_pred -ccccCCCCChHH--HHHHH-CCEEEECCCCC
Confidence 23322 333 22332 47888888875
No 187
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=29.27 E-value=1.9e+02 Score=34.95 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc-------------cchhHHHHHHHHHHcCCcEEEEEeeeccC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY-------------NWSGYRRLFQIVRELELKLQVVMSFHECG 195 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mvr~~GLKvqvvmsFHqCG 195 (562)
+.+.+.+.|..|+.+||+.|.+.=-+-.... +..-| ....+++|++.++++||+|..=+-+--++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4578999999999999999977654432211 22233 36789999999999999996655554444
No 188
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=29.15 E-value=1.1e+02 Score=29.59 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (562)
|++++++.++.||..||+.|.|--=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 78999999999999999999998888887663 3356777887765
No 189
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.71 E-value=68 Score=34.65 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEE
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvq 186 (562)
+.+.|+.+++.|+++|..+. |.++-....+ .. -..++++.++++||+|+
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V~ 295 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDII 295 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEEE
Confidence 55778999999999866543 3333322222 22 56789999999999994
No 190
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=28.31 E-value=90 Score=36.95 Aligned_cols=83 Identities=11% Similarity=0.148 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHH-HHHHHHc--CCcEEEEEeeeccCCCCCCCCcCCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRL-FQIVREL--ELKLQVVMSFHECGGNVGDDVHIPLP 207 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l-~~mvr~~--GLKvqvvmsFHqCGGNVGD~~~IpLP 207 (562)
.+++..++.|.++|+.-|-+|.= | +|.-.-.+-+|..|.+. .+..+.+ |++--.-+.+|-|-||++|- =
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL--~~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i-----~ 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPAL--REGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI-----I 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchh--hhcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH-----H
Confidence 36778889999999999999976 5 23211122355555333 3444332 55311234899999987621 1
Q ss_pred hhHHhhhccCCCeeeeC
Q 008542 208 QWVMEIGQNNPEIYFTD 224 (562)
Q Consensus 208 ~WV~e~g~~~pDI~~tD 224 (562)
.++. +.+-|.+..|
T Consensus 648 ~~l~---~l~vD~i~lE 661 (750)
T TIGR01371 648 ESIA---DLDADVISIE 661 (750)
T ss_pred HHHH---hCCCCEEEEE
Confidence 2332 5556666655
No 191
>PRK02227 hypothetical protein; Provisional
Probab=28.13 E-value=76 Score=32.92 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=36.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCC---CccccchhHHHHHHHHHHcCCcE
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHT---PQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~---p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.-+..++++|++|+|+|-+ ++.+ -..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567789999999999965 3333 23467788899999999999997
No 192
>PRK06233 hypothetical protein; Provisional
Probab=27.93 E-value=1.2e+02 Score=32.73 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ecCC---CccccchhHHHH-------HHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIV-EAHT---PQVYNWSGYRRL-------FQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiV-E~~~---p~~YdWs~Y~~l-------~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
+++++.+++|.++|++.|-+|.= |+.. +... ..--.+..|.++ ++.+- .|+.--..+++|-|-||..
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~-~~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKAL-ADLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHH-hCCCcCCEEEEEeeCCCCC
Confidence 46778889999999999999975 7632 2100 110123334333 32222 2553344679999998864
No 193
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=27.91 E-value=63 Score=33.68 Aligned_cols=74 Identities=26% Similarity=0.266 Sum_probs=0.0
Q ss_pred CCCCCCCccEEEeeccceeeCCCcccCHHHHHHHHHHHHH-cCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcC
Q 008542 104 DFAGTPYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKS-INVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELE 182 (562)
Q Consensus 104 ~~~~~~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~-~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~G 182 (562)
+++..-+-..-||-||.--+.-+..++++.+...||+||- +--.|+. |+|||-+=..-.-.---+.++.|+++|
T Consensus 90 ~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 90 DYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred HHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
No 194
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.89 E-value=1.8e+02 Score=23.12 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQV 187 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqv 187 (562)
.++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.|+++.+
T Consensus 16 ~~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 4677889999999999955 3432 567788999999999998843
No 195
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=27.59 E-value=1.4e+02 Score=32.10 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCcceEEEee-eeeeeecCCCccccchhHHHHHH----H-HHHcCCcEEEEEeeeccCCCCCCC
Q 008542 131 PEILVNQLKILKSINVDGVMVDC-WWGIVEAHTPQVYNWSGYRRLFQ----I-VRELELKLQVVMSFHECGGNVGDD 201 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~----m-vr~~GLKvqvvmsFHqCGGNVGD~ 201 (562)
..++++.++.|+.+||.-|.+|. -|+.-.+... |..|.+.+. . ++..|-++ -.++|-|.|+..+.
T Consensus 157 A~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~~ 227 (330)
T COG0620 157 ALALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccch
Confidence 34677888999999999999999 4777655322 244444332 2 23345555 56778999976543
No 196
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=27.37 E-value=76 Score=32.90 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=34.7
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCC---ccccchhHHHHHHHHHHcCCcE
Q 008542 138 LKILKSINVDGVMVDCWWGIVEAHTP---QVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 138 L~~LK~~GVdGV~vdVWWGiVE~~~p---~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
+..++++|.+|||+|-+ .+.+. ..+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 46778999999999976 33333 3456778888899999999998
No 197
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=27.34 E-value=52 Score=33.84 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 008542 125 NCELVDPEILVNQLKILKSINVDGVMVDCWWG 156 (562)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWG 156 (562)
++++..+..+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 356666667776666776 9999999999954
No 198
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.33 E-value=2.8e+02 Score=27.99 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=47.1
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCC--cCCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDV--HIPL 206 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~--~IpL 206 (562)
.+...+.+.|+...+.|++-|.+- ||.-.+ ......-+.++++++.+.+.|.=| |.|- ||-|.+. .+|.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilv--vaaA----GN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILL--FCSA----SDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEE--EEec----CCCCCcCCCcccC
Confidence 367789999999999999988777 675332 111223567788888888877444 4444 6666544 4555
Q ss_pred Chh
Q 008542 207 PQW 209 (562)
Q Consensus 207 P~W 209 (562)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 199
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=27.02 E-value=1.8e+02 Score=30.32 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC------CCCcC
Q 008542 134 LVNQLKILK---SINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG------DDVHI 204 (562)
Q Consensus 134 ~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG------D~~~I 204 (562)
++.++++|| ++|++.+..-. -||-+.|.+..+.+++.|+++-++-.+=-+.. .. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~s-~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPINN-YASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccCC-HHHHHHHHhcCCC
Confidence 444555554 49999887543 47889999999999999888755544322210 00 12557
Q ss_pred CCChhHHhhhcc
Q 008542 205 PLPQWVMEIGQN 216 (562)
Q Consensus 205 pLP~WV~e~g~~ 216 (562)
.+|.||.+.-++
T Consensus 215 ~vP~~l~~~l~~ 226 (281)
T TIGR00677 215 KIPQEIMSRLEP 226 (281)
T ss_pred CCCHHHHHHHHh
Confidence 899999976543
No 200
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=26.71 E-value=1.1e+02 Score=33.21 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=43.7
Q ss_pred HHHHHHHHcCcceEEEeeee-eeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCC
Q 008542 136 NQLKILKSINVDGVMVDCWW-GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGG 196 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWW-GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGG 196 (562)
.-|++.-++|+|.|.+.--| |.+......+|...+-.++++-+++.+-. .+|+-| |+|
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~-~pii~f--~~g 251 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGG-VPVIHF--CKG 251 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCC-CcEEEE--CCC
Confidence 34556667999999886555 44555668899999999999999987776 356555 877
No 201
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.55 E-value=1.7e+02 Score=32.58 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=39.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCC-------ccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
..|+.||++|+..|.+. +|...+ +..+.+.+.+.+++++++|+++.+-+=+
T Consensus 288 ell~~l~~aG~~~v~iG-----iES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 288 DILHLYRRAGLVHISLG-----TEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred HHHHHHHHhCCcEEEEc-----cccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 46788999999998886 465433 4567888999999999999987654444
No 202
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=26.51 E-value=2.4e+02 Score=26.68 Aligned_cols=80 Identities=9% Similarity=0.082 Sum_probs=48.0
Q ss_pred EEecceeecCCCCCChh-hh---hccccCCCCCCChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHH
Q 008542 392 AKLSGIHWWYKTASHAA-EL---TAGFYNPSNRDGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQV 467 (562)
Q Consensus 392 aKV~GIHWwY~t~SHaA-EL---TAGyYNt~~rdGY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV 467 (562)
+++.|+||+|....... .. .-|+ .....-|.++++.|++. +...+++++.......+....-+-+.++..+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 48899999997543321 11 1132 23344588999999874 5566677775432111112134568888888
Q ss_pred HHHHHhcCC
Q 008542 468 LNAAWDVSI 476 (562)
Q Consensus 468 ~~aA~~~Gv 476 (562)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776653
No 203
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=26.50 E-value=1.7e+02 Score=28.23 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 134 LVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
.++-++.++++||+.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999998733211 255678889999999 998888887
No 204
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.02 E-value=1.4e+02 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=35.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
....||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|.
T Consensus 73 S~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 4578999999999986 5666666666667777888999987 7777
No 205
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.88 E-value=43 Score=36.43 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=34.0
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 137 QLKILKSI-NVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~-GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.|..+++. ||+||.....+--. ...++-...+++-+.|+++||++.||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47778886 99999988865222 33456667889999999999999998765
No 206
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.86 E-value=73 Score=32.81 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.6
Q ss_pred CcccCHHHHHHHHHHHHHcCcceEEEeeee-eeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 126 CELVDPEILVNQLKILKSINVDGVMVDCWW-GIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWW-GiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
..+.+...++ +.++.-++|+|.+|+=| |-+ +..++++++++++|+++ +++.| |.+++|
T Consensus 235 E~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi----------~~~~~~~~~a~~~gi~~--~~~~~-~~~~i~ 293 (316)
T cd03319 235 ESCFSAADAA---RLAGGGAYDGINIKLMKTGGL----------TEALRIADLARAAGLKV--MVGCM-VESSLS 293 (316)
T ss_pred CCCCCHHHHH---HHHhcCCCCEEEEeccccCCH----------HHHHHHHHHHHHcCCCE--EEECc-hhhHHH
Confidence 3444555544 55677899999999764 333 23589999999999999 65554 355544
No 207
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=25.69 E-value=3.7e+02 Score=28.07 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCccc------cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCC-
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQVY------NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP- 207 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP- 207 (562)
.+++++..++|++.|.+-+ +.=|...-.++ -+.-+.+++++++++||++++.+ .|....++.
T Consensus 77 ~~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~ 145 (279)
T cd07947 77 KEDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYG 145 (279)
T ss_pred HHHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCccc
Confidence 3556666678999988754 33333223333 34558888899999999986655 233323333
Q ss_pred ---hhHHhhhc----cCCC--eeeeCCCCCc
Q 008542 208 ---QWVMEIGQ----NNPE--IYFTDREGRR 229 (562)
Q Consensus 208 ---~WV~e~g~----~~pD--I~~tDr~G~r 229 (562)
.|+.+..+ .-.| |-+.|--|.-
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a 176 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYG 176 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcC
Confidence 47776544 3333 3466666653
No 208
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=25.43 E-value=1.4e+02 Score=31.78 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee--eeeeecCCCccccchhHHHHHHHHHHcCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCW--WGIVEAHTPQVYNWSGYRRLFQIVRELEL 183 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdWs~Y~~l~~mvr~~GL 183 (562)
+++-+.---++.+++|.||+|+.|. =...=.+++||.+...++++.+-++..+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3344444445668999999999998 33333468999999999999998887654
No 209
>PLN03231 putative alpha-galactosidase; Provisional
Probab=25.22 E-value=1.1e+02 Score=33.49 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=38.2
Q ss_pred CHHHHHHHH----HHHHHcCcceEEEeeeeeeeec----------------CCCcccc-----ch------hHHHHHHHH
Q 008542 130 DPEILVNQL----KILKSINVDGVMVDCWWGIVEA----------------HTPQVYN-----WS------GYRRLFQIV 178 (562)
Q Consensus 130 ~~~~~~~~L----~~LK~~GVdGV~vdVWWGiVE~----------------~~p~~Yd-----Ws------~Y~~l~~mv 178 (562)
+++.+.+.. +-||.+|-+-|.||.-|-.-++ .+-|+.- |- |.+.|++.|
T Consensus 16 ~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 16 SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 444444444 3688999999999977754321 1122222 22 899999999
Q ss_pred HHcCCcE
Q 008542 179 RELELKL 185 (562)
Q Consensus 179 r~~GLKv 185 (562)
++.|||+
T Consensus 96 Hs~GLKf 102 (357)
T PLN03231 96 HALGLKL 102 (357)
T ss_pred HhCCcce
Confidence 9999998
No 210
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=25.08 E-value=1.2e+02 Score=35.69 Aligned_cols=65 Identities=14% Similarity=0.334 Sum_probs=41.6
Q ss_pred HHHHHH--HHHHHHHcCcceEEEe-e----------------eeeeeec---CCCccc----cchhHHHHHHHHHHcCCc
Q 008542 131 PEILVN--QLKILKSINVDGVMVD-C----------------WWGIVEA---HTPQVY----NWSGYRRLFQIVRELELK 184 (562)
Q Consensus 131 ~~~~~~--~L~~LK~~GVdGV~vd-V----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mvr~~GLK 184 (562)
-.++.. .|..||++||+.|.+- | .||.-=. .-...| .-..+++|++.+++.||+
T Consensus 181 f~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~ 260 (688)
T TIGR02100 181 YAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIE 260 (688)
T ss_pred HHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCE
Confidence 355554 4999999999999763 2 2442100 001122 245699999999999999
Q ss_pred EEEEEee-eccC
Q 008542 185 LQVVMSF-HECG 195 (562)
Q Consensus 185 vqvvmsF-HqCG 195 (562)
|..=+-| |-+.
T Consensus 261 VIlDvV~NHt~~ 272 (688)
T TIGR02100 261 VILDVVYNHTAE 272 (688)
T ss_pred EEEEECcCCccC
Confidence 9665555 5443
No 211
>PRK05926 hypothetical protein; Provisional
Probab=25.06 E-value=71 Score=34.59 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCcceEEEeee----eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 134 LVNQLKILKSINVDGVMVDCW----WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 134 ~~~~L~~LK~~GVdGV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.+..|++||++|++-+-..-+ .-+-+.-.|++-....+.+..+.++++||++-.-|=|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~ 229 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATMLC 229 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCceEE
Confidence 477799999999987764301 1112223467777788899999999999999554444
No 212
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.01 E-value=1.8e+02 Score=29.50 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=52.0
Q ss_pred ccCHHHHHHHHHHHHH--cCcceEEEeeeeeeeecCCCccc--c-----chhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008542 128 LVDPEILVNQLKILKS--INVDGVMVDCWWGIVEAHTPQVY--N-----WSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~--~GVdGV~vdVWWGiVE~~~p~~Y--d-----Ws~Y~~l~~mvr~~GLKvqvvmsFHqCGGNV 198 (562)
..+.+.+.+-.+.+++ .-+|+|.+|.+|..- -+.+ + |.--+++++-+++.|+|+ ++..|
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~--~~~~~------ 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKL--VLWID------ 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEE--EEEeC------
Confidence 3577888888999988 557899999999742 3333 3 445689999999999999 55554
Q ss_pred CCCCcCCCChhHHhhhc
Q 008542 199 GDDVHIPLPQWVMEIGQ 215 (562)
Q Consensus 199 GD~~~IpLP~WV~e~g~ 215 (562)
+.| -.|..+.-+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 333 778887544
No 213
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=24.93 E-value=68 Score=31.33 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCcceEEEee
Q 008542 132 EILVNQLKILKSINVDGVMVDC 153 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdV 153 (562)
+++++.|+.|+++|||||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999963
No 214
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=24.78 E-value=2.7e+02 Score=28.40 Aligned_cols=59 Identities=24% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHH-cCCcEEEEEeeeccCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRE-LELKLQVVMSFHECGG 196 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~-~GLKvqvvmsFHqCGG 196 (562)
+.....+++|+++|++.|.+|.= |...-. + ..++....+++.+.+.+ .|-+ ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 35677888999999999999874 554432 2 45788888888888876 3333 24688987
No 215
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=24.72 E-value=1.7e+02 Score=32.76 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
..+.++..+++..+.||+.|.+-+--.-++ -.++.++.++++|+++++.+|+
T Consensus 94 pddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 94 ADDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 345678889999999999988776433332 3788999999999999988887
No 216
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=24.66 E-value=1.9e+02 Score=27.35 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccC
Q 008542 138 LKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNN 217 (562)
Q Consensus 138 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~ 217 (562)
..+||+.||++|++=+.=|.- |.=..|.+-.+.++++||++-+..-++.| |..|. ..==.|+.+..+
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a--~~qA~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA--EAQADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH--HHHHHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH--HHHHHHHHHHhc--
Confidence 567799999999999864432 22345788888999999998766666543 22211 000013322211
Q ss_pred CCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHHHHHHHHHHhhhhc
Q 008542 218 PEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFV 269 (562)
Q Consensus 218 pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~ 269 (562)
+. ....+-+++|-+--...........+.++.|.+++....|
T Consensus 79 ---------~~-~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 79 ---------GG-DPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---------TS-STSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---------cc-CCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 11 1222223344331123344578888999999999977665
No 217
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.63 E-value=1.6e+02 Score=26.47 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=32.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
..+++....-|+.++++|+.+|-+-- + +.=.++.++++++|+++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~~----------g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQP----------G----AESEELIEAAREAGIRV 105 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE-T----------T----S--HHHHHHHHHTT-EE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEEc----------c----hHHHHHHHHHHHcCCEE
Confidence 45889999999999999999876532 2 56689999999999998
No 218
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=24.23 E-value=2.7e+02 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHH-HHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHc
Q 008542 132 EILV-NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVREL 181 (562)
Q Consensus 132 ~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~ 181 (562)
+++. +-++.++..|.|||.+|.-|...+.. -++..|.++++.+|+.
T Consensus 90 ~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 90 AAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred HHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 3444 44456688999999999655433321 2467788877777764
No 219
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=24.23 E-value=1.9e+02 Score=29.03 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=38.2
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeec
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHE 193 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHq 193 (562)
+.+.+.....|+.++++||..|. | +|.- +.++ +| +.+.+++++.|+++.+...+|.
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~~---~~~~~~~~~~g~~v~~~~G~hp 83 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-DV---EKLAEVARATGVNIVAATGFYK 83 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-CH---HHHHHHHHHhCCcEEEecccCC
Confidence 44567778899999999998772 2 1110 0011 33 6677888899999988888874
No 220
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=24.21 E-value=1.4e+02 Score=33.55 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+.+.+.+..+.++++|..+||+++.+| |++.+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 478999999999999999999997654 4567777777778877665544554
No 221
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=24.21 E-value=1.4e+02 Score=32.07 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCcceEEEee---eeeeeec-----CCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDC---WWGIVEA-----HTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNV 198 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdV---WWGiVE~-----~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNV 198 (562)
+.+...|++|+..|+|||-+|+ ||=..+. .++-+=.=..|.++.+++|.+.=-+++|- |-|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~---qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIP---QNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe---cccHhh
Confidence 4788999999999999998886 3222211 12233344558899999998765555542 445443
No 222
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.20 E-value=57 Score=34.01 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=42.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHH----HHHHHcCCcEEEEEeee
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLF----QIVRELELKLQVVMSFH 192 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~----~mvr~~GLKvqvvmsFH 192 (562)
.+|.+|+..||+.|-.--.|= ++...++.|- ..+++|. .-+.++|||+.+-+..|
T Consensus 15 eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~-~h~~rl~~~E~~Ra~~~Gl~~~vavGvH 73 (254)
T COG1099 15 EDLEKMALSGIREVITLAHDP-YPMKTAEVYL-DHFRRLLGVEPERAEKAGLKLKVAVGVH 73 (254)
T ss_pred HHHHHHHHhChhhhhhcccCC-CCcccHHHHH-HHHHHHHccchhhHHhhCceeeEEeccC
Confidence 589999999999999988887 6766666552 2223333 34789999999999999
No 223
>PTZ00445 p36-lilke protein; Provisional
Probab=24.09 E-value=1.7e+02 Score=30.10 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=45.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccch------------hHHHHHHHHHHcCCcE
Q 008542 128 LVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWS------------GYRRLFQIVRELELKL 185 (562)
Q Consensus 128 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs------------~Y~~l~~mvr~~GLKv 185 (562)
++..+....=.+.||+.||..|.+|.==-+|...+.|..++. ..+++++.++++|++|
T Consensus 25 ~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 25 LNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 345566666677899999999999986666776666655553 4888999999999999
No 224
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=23.81 E-value=2.4e+02 Score=29.37 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCcc---ccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 124 MNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQV---YNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 124 ~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
-=|.+..++++..--+.+|++|+.-+.-..|= =+.+|.. ....+++.|.+.+++.||.+ +-..|
T Consensus 21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~k---pRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYK---PRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred ccCccCCHHHHHHHHHHHHHcCCCEEEecccC---CCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 34777889999888899999999999988885 1222222 23468999999999999998 54554
No 225
>PRK00111 hypothetical protein; Provisional
Probab=23.79 E-value=1.3e+02 Score=30.09 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhhhcCceEEEEEeeccCCCCCCCCCCCCCCC-CcCCCCc
Q 008542 251 EVYFDYMRSFRVEFNEFFVDGIIAEIEVGLGPCGELRYPTYPAKHG-WKYPGIG 303 (562)
Q Consensus 251 q~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLGP~GELRYPSyp~~~g-W~~PGiG 303 (562)
+.-+=......+.+++++|..+|.+|-| .||.+ ||. .+| |+.+|.|
T Consensus 128 tEL~~~r~~Il~rLNe~LG~~vV~dIri-~GP~~----psw--~~G~~~v~grg 174 (180)
T PRK00111 128 TNLRMMQRQILQVIAEKVGPDIITELRI-FGPQA----PSW--RKGPLHVKGRG 174 (180)
T ss_pred HHHHhHHHHHHHHHHHHcCcCceeEEEE-ECCCC----CCC--CcCCCcCCCCC
Confidence 3444445678889999999889999999 99963 332 234 6667777
No 226
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.41 E-value=1.8e+02 Score=30.80 Aligned_cols=52 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC-------ccccchhHHHHHHHHHHcCCc-EEEEEee
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELK-LQVVMSF 191 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLK-vqvvmsF 191 (562)
+..|+.||++||+.|.+. ||...| ...++.-+.+.+++++++|++ |.+-|-+
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 227
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=23.39 E-value=82 Score=34.47 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.|..++++||+||.-.. -.-.....+.-+--.++=++|+++||.+-||=|.
T Consensus 15 ~l~~irQ~Gv~gIV~aL----h~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv 65 (362)
T COG1312 15 TLEDIRQAGVKGVVTAL----HHIPAGEVWPVEEILKRKEEIESAGLTWSVVESV 65 (362)
T ss_pred cHHHHHHhCccceeccC----CCCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC
Confidence 46778888999987443 2222233455566778888999999999888776
No 228
>PRK14705 glycogen branching enzyme; Provisional
Probab=23.37 E-value=1.4e+02 Score=37.51 Aligned_cols=54 Identities=15% Similarity=0.275 Sum_probs=38.3
Q ss_pred HHHHHHH-HHHHHHcCcceEEEeeeeeeeecCCCccccch-----------------hHHHHHHHHHHcCCcEEEEEee
Q 008542 131 PEILVNQ-LKILKSINVDGVMVDCWWGIVEAHTPQVYNWS-----------------GYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 131 ~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
-+++... |..||++||+.|.+== +.|- |...+|- .++++++.++++||+| ||-+
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmP---v~e~--p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD~ 835 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMP---VAEH--PFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLDW 835 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECc---cccC--CCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 3556556 6999999999997531 2332 4444553 3899999999999999 5544
No 229
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.31 E-value=87 Score=33.63 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee--------------------e-e--eeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 132 EILVNQLKILKSINVDGVMVDCW--------------------W-G--IVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW--------------------W-G--iVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
+.-.+-+++.|++|+|+|-.--+ | | +.|--..-.+.|.+|++|++.+++.||.+
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~ 92 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEF 92 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcE
Confidence 44455567778999999976543 1 1 00100112356789999999999999987
No 230
>PRK03705 glycogen debranching enzyme; Provisional
Probab=23.24 E-value=1e+02 Score=36.04 Aligned_cols=51 Identities=14% Similarity=0.453 Sum_probs=35.6
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeee-------eecCCCcccc------chhHHHHHHHHHHcCCcEE
Q 008542 137 QLKILKSINVDGVMVD-C----------------WWGI-------VEAHTPQVYN------WSGYRRLFQIVRELELKLQ 186 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vd-V----------------WWGi-------VE~~~p~~Yd------Ws~Y~~l~~mvr~~GLKvq 186 (562)
.|..||++||+.|.+- | .||. +|+ .|- =..+++|++-+++.||||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4899999999999762 2 2442 222 111 0258999999999999996
Q ss_pred EEEee
Q 008542 187 VVMSF 191 (562)
Q Consensus 187 vvmsF 191 (562)
.=+-|
T Consensus 260 lDvV~ 264 (658)
T PRK03705 260 LDVVF 264 (658)
T ss_pred EEEcc
Confidence 65666
No 231
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.21 E-value=8.2e+02 Score=25.68 Aligned_cols=117 Identities=10% Similarity=0.190 Sum_probs=76.6
Q ss_pred CCcccCHHHHHHHHHHHHHcCcceEEE---eeeeeee-e-------------------------cCCCccccchhHHHHH
Q 008542 125 NCELVDPEILVNQLKILKSINVDGVMV---DCWWGIV-E-------------------------AHTPQVYNWSGYRRLF 175 (562)
Q Consensus 125 ~~~~~~~~~~~~~L~~LK~~GVdGV~v---dVWWGiV-E-------------------------~~~p~~YdWs~Y~~l~ 175 (562)
...+...+.|++.|..|...+.+.+++ |=| .+- + ....+.|.=+-+++++
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 88 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNL-IFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELI 88 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCc-ccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHH
Confidence 345667899999999999999998885 323 221 1 1135678888999999
Q ss_pred HHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHH
Q 008542 176 QIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFD 255 (562)
Q Consensus 176 ~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~d 255 (562)
+.|++.|+.|+ +.|-.|.=.....+.+|++.............|.+. .+.=.+
T Consensus 89 ~yA~~rgI~vI---------------PEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~------------~~~t~~ 141 (326)
T cd06564 89 AYAKDRGVNII---------------PEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDIS------------NPEAVK 141 (326)
T ss_pred HHHHHcCCeEe---------------ccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCC------------CHHHHH
Confidence 99999999993 556677655555566777655543222333344333 233335
Q ss_pred HHHHHHHHHhhhhc
Q 008542 256 YMRSFRVEFNEFFV 269 (562)
Q Consensus 256 fm~SF~~~F~~~~~ 269 (562)
|+++.-+++.+.+.
T Consensus 142 f~~~l~~E~~~~f~ 155 (326)
T cd06564 142 FVKALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHHHHhcC
Confidence 77777777777664
No 232
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=23.13 E-value=93 Score=32.35 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 135 VNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
..++++.|+.|+|.|++.-= +..--.....+-.++-|.+.++.+++.||+|
T Consensus 134 ~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~V 185 (237)
T TIGR00559 134 KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKV 185 (237)
T ss_pred HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence 56788889999999998643 3222122233456899999999999999999
No 233
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.09 E-value=1.5e+02 Score=29.31 Aligned_cols=59 Identities=8% Similarity=0.184 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccc--hhHHHHHHHHHHcCCcEEEEEeee
Q 008542 132 EILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
+.++..++..+.+|++.|.+.-+-..-+...+..+++ ...+++.+++++.|+++ .+=+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 4578888889999999998631100011111111111 35788999999999988 66666
No 234
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=22.37 E-value=90 Score=32.77 Aligned_cols=52 Identities=23% Similarity=0.232 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcc----ccchhHHHHHHHHHHcCCcEEEE
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQV----YNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~----YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
+..|++||..+||.|.+|.. |.=|- =-+. +.=.-|.+.+.++++.|++|.|=
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~v-Ik~vy~l~ksv~dyl~~l~~L~e~~irvvpH 155 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDV-IKRVYKLPKSVEDYLRSLLLLKENGIRVVPH 155 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHH-HHHHHcCCccHHHHHHHHHHHHHcCceecee
Confidence 67899999999999999975 11110 0111 22246999999999999999653
No 235
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=22.33 E-value=1.3e+02 Score=32.94 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeec----CCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEA----HTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
.++.-|++||++|.|.++..-===+.|. ..|.+-++.+..+..+.+.+.|++-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 4666799999999999987544334443 4589999999999999999999999888887
No 236
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.23 E-value=90 Score=28.65 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeee---eeeec-CCCccccchhHHHHHHHHHHcCCcEEEEEeee
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWW---GIVEA-HTPQVYNWSGYRRLFQIVRELELKLQVVMSFH 192 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWW---GiVE~-~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFH 192 (562)
.+.++..++..+.+|+..|.+...+ ..-.. +..-..--..++++.+++++.|+++ ++=.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEecc
Confidence 4688899999999999999888553 11110 0111222346788999999999665 44444
No 237
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.92 E-value=1.8e+02 Score=31.20 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCc----------cccchhHHHHHHHHHHcCCc-E
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQ----------VYNWSGYRRLFQIVRELELK-L 185 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~----------~YdWs~Y~~l~~mvr~~GLK-v 185 (562)
..+++.||++||++|++.+ |...+. ..+|..=.+..+.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5667999999999999763 442222 45677777788999999996 6
No 238
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.90 E-value=2.6e+02 Score=28.80 Aligned_cols=52 Identities=4% Similarity=-0.001 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSF 191 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsF 191 (562)
..+..+.++++....|++.|.+-+-.. +.+--.+.++.+|+.|+++++-+++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 345678899999999999988854322 2567788899999999998765543
No 239
>PLN02417 dihydrodipicolinate synthase
Probab=21.70 E-value=3.6e+02 Score=27.69 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccc--hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCC
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW--SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPL 206 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpL 206 (562)
.+.+.--...++.+++|+|+||+ ..|--|.. .+..+.|+-+.++. ||+=. |.-....+.|
T Consensus 80 ~~t~~~i~~a~~a~~~Gadav~~---------~~P~y~~~~~~~i~~~f~~va~~~----pi~lY-----n~P~~tg~~l 141 (280)
T PLN02417 80 NSTREAIHATEQGFAVGMHAALH---------INPYYGKTSQEGLIKHFETVLDMG----PTIIY-----NVPGRTGQDI 141 (280)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEE---------cCCccCCCCHHHHHHHHHHHHhhC----CEEEE-----EChhHhCcCC
Q ss_pred ChhHHhhhccCCC-eeeeCCCCCcccceeecccCcccccCC
Q 008542 207 PQWVMEIGQNNPE-IYFTDREGRRNSECLTWGIDKERVLRG 246 (562)
Q Consensus 207 P~WV~e~g~~~pD-I~~tDr~G~rn~E~lSl~~D~~pvl~G 246 (562)
|.-+.+.-.++|. +-++|.+|+ .....+-.|.+.||.|
T Consensus 142 ~~~~l~~l~~~pni~giKdss~~--~~~~~~~~~~~~v~~G 180 (280)
T PLN02417 142 PPEVIFKIAQHPNFAGVKECTGN--DRVKQYTEKGILLWSG 180 (280)
T ss_pred CHHHHHHHhcCCCEEEEEeCCCc--HHHHHHhcCCeEEEEc
No 240
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.69 E-value=2.2e+02 Score=26.26 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCee
Q 008542 421 DGYAPIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILV 478 (562)
Q Consensus 421 dGY~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l 478 (562)
-|+..+.+.+++..+.|.|-+- .++|.+....+...|+++||++
T Consensus 33 ~G~~~v~kaikkgkakLVilA~--------------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIAE--------------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEeC--------------CCChHHHHHHHHHHHHHcCCCE
Confidence 4799999999999999999872 2667788899999999999996
No 241
>PLN02784 alpha-amylase
Probab=21.47 E-value=2.4e+02 Score=34.55 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccc-------------hhHHHHHHHHHHcCCcEEEEEee-eccCC
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNW-------------SGYRRLFQIVRELELKLQVVMSF-HECGG 196 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mvr~~GLKvqvvmsF-HqCGG 196 (562)
++.|...|..|+++||++|-+.-= .+..++..|+- ..+++|++.+++.|+||.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~---~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPP---TESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCC---CCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 689999999999999999988763 23333334432 35889999999999999554444 76654
No 242
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=21.45 E-value=1e+02 Score=26.36 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=27.6
Q ss_pred EeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeecc
Q 008542 439 FTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVASE 481 (562)
Q Consensus 439 FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~GE 481 (562)
-.|||..-... + .+++.|-.++...+++.||.++=|
T Consensus 48 ~~~~e~~v~~~-----~--~~~~~lr~~L~~la~elgvDIavQ 83 (84)
T cd04871 48 KACVEFSVRGQ-----P--ADLEALRAALLELASELNVDIAFQ 83 (84)
T ss_pred cEEEEEEEeCC-----C--CCHHHHHHHHHHHhcccCceEEEe
Confidence 34888765532 1 478999999999999999988643
No 243
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=21.37 E-value=1.5e+02 Score=31.67 Aligned_cols=60 Identities=22% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 132 EILVNQLKILKSINVDGVMVDCW-WGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 132 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
++++..+++|.++|++-|-+|.= |... +.. .=+.|.++++.+-+ |++.. .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~----~~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVF----FDE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhh----hHH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 46788889999999999999965 6631 100 13456566666653 67764 44599988863
No 244
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=21.32 E-value=95 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=23.6
Q ss_pred CCCCCCChHHHHHHHHHcCcEEEEeecc
Q 008542 416 NPSNRDGYAPIAAMLKKHGVALNFTCVE 443 (562)
Q Consensus 416 Nt~~rdGY~~Ia~mf~kh~~~l~FTClE 443 (562)
.--.|-|.-.|+++|+|||+..+|-+.-
T Consensus 72 ~YG~rvG~~RiLdlL~~~gv~aTffv~g 99 (297)
T TIGR03212 72 EYGSRAGFWRLLRLFTERGIPVTVFGVA 99 (297)
T ss_pred hhcchhCHHHHHHHHHHcCCCEEEEeEH
Confidence 3347889999999999999999997654
No 245
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.16 E-value=4.2e+02 Score=27.39 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc--cchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLP 207 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP 207 (562)
|...+..+|+++.++|+|-+.+||= +|+| |.+-=-.+++.+|+. -++ .+..| -.|.-|
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVM--------DghFVPNiTfGp~~v~~l~~~-t~~--p~DvH---------LMV~~p 73 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVM--------DGHFVPNITFGPPVVKALRKI-TDL--PLDVH---------LMVENP 73 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEecc--------CCCcCCCcccCHHHHHHHhhc-CCC--ceEEE---------EecCCH
Confidence 7789999999999999999999983 5554 344334556666662 122 55566 334444
Q ss_pred h-hHHhhhccCCCeeeeC-CCCCcccceee----cccCcccccCCCchhHHHHHHHH
Q 008542 208 Q-WVMEIGQNNPEIYFTD-REGRRNSECLT----WGIDKERVLRGRTAVEVYFDYMR 258 (562)
Q Consensus 208 ~-WV~e~g~~~pDI~~tD-r~G~rn~E~lS----l~~D~~pvl~GRTpiq~Y~dfm~ 258 (562)
. |+-.-.+.-+|+..-- +....-.+.|+ .|+--==+|+--||++.|+.|+.
T Consensus 74 ~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~ 130 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLD 130 (220)
T ss_pred HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHh
Confidence 4 6665556656744333 33333333333 34433335788899999987765
No 246
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=21.16 E-value=1.9e+02 Score=30.62 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=38.3
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeecCCC-------ccccchhHHHHHHHHHHcCCc-EEEEE
Q 008542 136 NQLKILKSINVDGVMVDCWWGIVEAHTP-------QVYNWSGYRRLFQIVRELELK-LQVVM 189 (562)
Q Consensus 136 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mvr~~GLK-vqvvm 189 (562)
..|+.||++||+.|.+.| |...+ ...++.-+.+.+++++++|++ |.+-|
T Consensus 100 e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dl 156 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDL 156 (374)
T ss_pred HHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEe
Confidence 578999999999999988 54332 345788899999999999987 53333
No 247
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=21.14 E-value=1.2e+03 Score=26.32 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=104.7
Q ss_pred CcccCHHHHHHHHHHHHH--cCcceEEEeeeeeeeecC---CCccccchhHHHHHHHHHHcCCcEEEEEeeeccCCCCCC
Q 008542 126 CELVDPEILVNQLKILKS--INVDGVMVDCWWGIVEAH---TPQVYNWSGYRRLFQIVRELELKLQVVMSFHECGGNVGD 200 (562)
Q Consensus 126 ~~~~~~~~~~~~L~~LK~--~GVdGV~vdVWWGiVE~~---~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD 200 (562)
|.-.++..+.+++..+.+ -|-.-|.+-.=|+ |.. .-.+..=.-|..+.+.+++.||++-
T Consensus 63 G~aR~~~El~~D~~~~~~L~pg~~~vnLH~~y~--~~d~~vdrd~~~p~hf~~w~~~Ak~~glglD-------------- 126 (414)
T TIGR01748 63 GKARTPSELRADLEKAMSLIPGKHRLNLHAIYL--ETDEPVSRDEIKPEHFKNWVEWAKANGLGLD-------------- 126 (414)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceeeecccc--cCCCcccccccCcccHHHHHHHHHHcCCCcC--------------
Confidence 555688899999988866 4778899999995 322 1123333678899999999999992
Q ss_pred CCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecccCcccccCCCchhHHHHHH-------HHHHHHHHhhhhcCceE
Q 008542 201 DVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWGIDKERVLRGRTAVEVYFDY-------MRSFRVEFNEFFVDGII 273 (562)
Q Consensus 201 ~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~~D~~pvl~GRTpiq~Y~df-------m~SF~~~F~~~~~~~vI 273 (562)
=||..| .+.. .+.=+||. .|-+.=|+| ++...+.|..-+|+..|
T Consensus 127 ---------------fNpn~F-sh~~---~k~G~SLs----------hpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~~l 177 (414)
T TIGR01748 127 ---------------FNPTCF-SHPL---SADGFTLS----------HPDDSIRQFWIDHCKASRRISEYFGKELGTPSV 177 (414)
T ss_pred ---------------cCcccC-CCcc---ccCCCccc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 233333 1111 11112332 223333333 46677888888887444
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHhCCcccCCCCCCCCCCCCCCCCCCc--cccC
Q 008542 274 AEIEVGLGPCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEARGHLFWARGPGNAGSYNSTPHETGF--FRDG 351 (562)
Q Consensus 274 ~eI~VGLGP~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~G~~~WG~gP~nag~Yn~~P~~t~F--F~~g 351 (562)
..|=| .+|-+|||.-.|.- =+.++.+|.+.-.+...+.|-. + -..+++-+-+| |.-|
T Consensus 178 ~niWi---------------pDG~kd~~~d~~~~-r~Rl~eSLdeI~a~~l~~~~~~---~--~vE~KlFg~g~EsYtvg 236 (414)
T TIGR01748 178 MNIWI---------------PDGMKDIPVDRLTP-RKRLLEALDEVFSEKLNEAHHI---D--AVESKLFGLGAESYTVG 236 (414)
T ss_pred heeec---------------CCCCCCCCcccccH-HHHHHHHHHHHHHhhcCchhhh---h--hheeeccccccceeecc
Confidence 44433 26788999887776 6777788888777766666532 1 12234444444 4432
Q ss_pred CcccccccchhHHHhHHHHHh
Q 008542 352 GEYDSYYGRFFLNWYSQVLID 372 (562)
Q Consensus 352 G~w~S~YGkFFL~WYS~~Li~ 372 (562)
-=+||.+-++.
T Consensus 237 ----------s~df~~~ya~~ 247 (414)
T TIGR01748 237 ----------SHEFYMGYATT 247 (414)
T ss_pred ----------chHHHHHHHcc
Confidence 45788887654
No 248
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=21.12 E-value=5.2e+02 Score=27.39 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCccEEEeeccceeeCCCcccCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 109 PYVPVYVMLPLGIIDMNCELVDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 109 ~~vpvyVMLPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
..+|+-+|.=...| -...+++=++.+|++|||||.|.= =| + ..=+++.+.++++||+...+
T Consensus 93 ~~~Pivlm~Y~Npi-------~~~Gie~F~~~~~~~GvdGlivpD--------LP--~--ee~~~~~~~~~~~gi~~I~l 153 (265)
T COG0159 93 VKVPIVLMTYYNPI-------FNYGIEKFLRRAKEAGVDGLLVPD--------LP--P--EESDELLKAAEKHGIDPIFL 153 (265)
T ss_pred CCCCEEEEEeccHH-------HHhhHHHHHHHHHHcCCCEEEeCC--------CC--h--HHHHHHHHHHHHcCCcEEEE
Confidence 55777777655543 346788899999999999998752 11 1 12246788888999999665
Q ss_pred EeeeccCCCCCCCCcCCCChhHHhhhcc-CCCeeeeCCCCCccc
Q 008542 189 MSFHECGGNVGDDVHIPLPQWVMEIGQN-NPEIYFTDREGRRNS 231 (562)
Q Consensus 189 msFHqCGGNVGD~~~IpLP~WV~e~g~~-~pDI~~tDr~G~rn~ 231 (562)
-+= + +.+.++..+.+. ..-|+|..+.|..-.
T Consensus 154 vaP-----------t-t~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 154 VAP-----------T-TPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 443 1 234555555433 356899999776543
No 249
>PLN02389 biotin synthase
Probab=21.12 E-value=7.3e+02 Score=27.15 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 129 VDPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 129 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.+++.+.+..+.+++.|+..|.+-..|-.. ......+.+|.++++.+++.|+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~---~~e~~~~e~i~eiir~ik~~~l~i 169 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDT---VGRKTNFNQILEYVKEIRGMGMEV 169 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCC---CCChhHHHHHHHHHHHHhcCCcEE
Confidence 477888899999999999998775555221 111235788999999999888765
No 250
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.07 E-value=2.4e+02 Score=27.71 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecC------CCccccchhHHHHHHHHHHcCCcEEEEE-eeecc
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAH------TPQVYNWSGYRRLFQIVRELELKLQVVM-SFHEC 194 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~------~p~~YdWs~Y~~l~~mvr~~GLKvqvvm-sFHqC 194 (562)
...++.++++|++.|.+-.=-. +.. ....-+++...+.++.+++.|+++++.+ ....|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 6788999999999998877422 110 1222367788899999999999998888 45544
No 251
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=21.07 E-value=1.8e+02 Score=30.53 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcE
Q 008542 131 PEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKL 185 (562)
Q Consensus 131 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKv 185 (562)
.++++.-|+.+|++|.+.|++.- +-=-.+=+.-.+|++++.+.|+++
T Consensus 89 ~~kvdeyl~e~~~lGfe~iEIS~--------G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 89 QDKVDEYLNEAKELGFEAIEISN--------GTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred cccHHHHHHHHHHcCccEEEecC--------CeeecchHHHHHHHHHHHhcccEE
Confidence 35889999999999999998752 333345678899999999999998
No 252
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.96 E-value=2.5e+02 Score=26.99 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=38.9
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEEEeeecc
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVVMSFHEC 194 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvvmsFHqC 194 (562)
++.+||+.||++|.+=+.-|. .|.=..|.+-.+-|+++||++-+..=++.+
T Consensus 16 d~~~vk~~gi~fviiKateG~-------~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG-------DHVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC-------CccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 477889999999999985332 244477888888999999999777656543
No 253
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.91 E-value=90 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCW 154 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVW 154 (562)
|...+++++++|+++|++.+.+||=
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiM 34 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIM 34 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeec
Confidence 6778999999999999999999985
No 254
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=20.71 E-value=2.8e+02 Score=29.70 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCCcc----------ccchhHHHHHHHHHHcCCc-E
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTPQV----------YNWSGYRRLFQIVRELELK-L 185 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~----------YdWs~Y~~l~~mvr~~GLK-v 185 (562)
.+++++||++||+.+++.+ |.-.+.. -+|..-.+.++.++++|++ |
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 4567999999999999853 4422333 2556667788999999997 5
No 255
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.71 E-value=1.7e+02 Score=27.66 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCcEEEEeecccccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCeeec--cccCCCCCcchHHHHHHhcCC
Q 008542 424 APIAAMLKKHGVALNFTCVELRTVDQHEDFPEALADPEGLVWQVLNAAWDVSILVAS--ENALPCYDREGYNKILENAKP 501 (562)
Q Consensus 424 ~~Ia~mf~kh~~~l~FTClEM~d~~q~~~~~~a~s~Pe~Lv~QV~~aA~~~Gv~l~G--ENAL~~~d~~~~~qi~~~~~~ 501 (562)
..+.+++++.|..+..-.++-.|-.. .+|+.+++++++.++.-.|.+.= ++.. ...++..+|+..++.
T Consensus 110 ~~~~~~l~~~G~~~v~w~~~~~D~~~--------~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~--~t~~~l~~~i~~l~~ 179 (191)
T TIGR02764 110 KAVLKAAESLGYTVVHWSVDSRDWKN--------PGVESIVDRVVKNTKPGDIILLHASDSAK--QTVKALPTIIKKLKE 179 (191)
T ss_pred HHHHHHHHHcCCeEEEecCCCCccCC--------CCHHHHHHHHHhcCCCCCEEEEeCCCCcH--hHHHHHHHHHHHHHH
Confidence 46788999999998777666544432 45899999998877654444433 2211 123577788877653
Q ss_pred CCCCCCCcceeeEEeecCcc
Q 008542 502 LNDPDGRHLSAFTYLRLSPV 521 (562)
Q Consensus 502 ~~~~~~~~~~~FTylRm~~~ 521 (562)
.+|+|..+.+.
T Consensus 180 ---------~Gy~~vtl~~l 190 (191)
T TIGR02764 180 ---------KGYEFVTISEL 190 (191)
T ss_pred ---------CCCEEEEHHHh
Confidence 25777766543
No 256
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=20.58 E-value=1.5e+02 Score=30.66 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHH----HHHcCCcEEEEEee
Q 008542 137 QLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQI----VRELELKLQVVMSF 191 (562)
Q Consensus 137 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m----vr~~GLKvqvvmsF 191 (562)
+...||++|++.|.+. +++++=.+.-=++++.. +.++||+. |+|.
T Consensus 78 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvCi 126 (250)
T PRK00042 78 SAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILCV 126 (250)
T ss_pred CHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEEc
Confidence 4678999999999996 67777777777888877 99999988 8887
No 257
>PRK08005 epimerase; Validated
Probab=20.57 E-value=1.1e+02 Score=30.91 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeecCCCccc--cchhHHHHHHHHHHc-CCcEEEEEeeeccCCCCCCCCcCCC
Q 008542 130 DPEILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVY--NWSGYRRLFQIVREL-ELKLQVVMSFHECGGNVGDDVHIPL 206 (562)
Q Consensus 130 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mvr~~-GLKvqvvmsFHqCGGNVGD~~~IpL 206 (562)
|...++++|++|+++|+|-+.+||= +|+| |.+-=-+.++.+|+. .+. +-.|----| +
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvM--------DG~FVPN~tfG~~~i~~l~~~t~~~----~DvHLMv~~--------P 70 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIE--------DTSFINNITFGMKTIQAVAQQTRHP----LSFHLMVSS--------P 70 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecc--------CCCcCCccccCHHHHHHHHhcCCCC----eEEEeccCC--------H
Confidence 7789999999999999999999983 5555 334334455555553 333 334422211 2
Q ss_pred ChhHHhhhccCCCeeeeCCCCCccc-cee----ecccCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceEEEEEeecc
Q 008542 207 PQWVMEIGQNNPEIYFTDREGRRNS-ECL----TWGIDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEIEVGLG 281 (562)
Q Consensus 207 P~WV~e~g~~~pDI~~tDr~G~rn~-E~l----Sl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI~VGLG 281 (562)
=.|+.+-.+..+|+..-.-+-..+. +.| +.|+--==.|.--||++.+..+.. ..+ .|.=.+|
T Consensus 71 ~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~--------~vD--~VlvMsV--- 137 (210)
T PRK08005 71 QRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL--------QLD--ALMIMTS--- 137 (210)
T ss_pred HHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH--------hcC--EEEEEEe---
Confidence 2366555555566555444322221 111 122211112455688888865543 221 2222222
Q ss_pred CCCCCCCCCCCCCCCCcCCCCcccccccHHHHHHHHHHHHHh
Q 008542 282 PCGELRYPTYPAKHGWKYPGIGEFQCYDKYLMKSLSKAAEAR 323 (562)
Q Consensus 282 P~GELRYPSyp~~~gW~~PGiGEFQCYDky~~~~l~~~a~~~ 323 (562)
-||-|. |.|-..+++.+++..+-.
T Consensus 138 -----------------~PGf~G-Q~f~~~~~~KI~~l~~~~ 161 (210)
T PRK08005 138 -----------------EPDGRG-QQFIAAMCEKVSQSREHF 161 (210)
T ss_pred -----------------cCCCcc-ceecHHHHHHHHHHHHhc
Confidence 355443 889999988888766543
No 258
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=20.48 E-value=3.1e+02 Score=24.78 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeecCCC---------ccccchhHHHHHHHHHHcC-CcEEEEE
Q 008542 135 VNQLKILKSINVDGVMVDCWWGIVEAHTP---------QVYNWSGYRRLFQIVRELE-LKLQVVM 189 (562)
Q Consensus 135 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p---------~~YdWs~Y~~l~~mvr~~G-LKvqvvm 189 (562)
...++.|+++|++.|.+++ ++. ....++-+.+.++.++++| +++...+
T Consensus 100 ~~~~~~l~~~~~~~i~isl-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 100 EELLEALKEAGVNRVSLGV-------QSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred HHHHHHHHHcCCCeEEEec-------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeE
No 259
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=20.42 E-value=4.1e+02 Score=29.60 Aligned_cols=82 Identities=20% Similarity=0.425 Sum_probs=46.6
Q ss_pred CCCccccc---hhHHHHHHHHHHcCCcEEEEEeeeccCCCCCCCCcCCCChhHHhhhccCCCeeeeCCCCCcccceeecc
Q 008542 161 HTPQVYNW---SGYRRLFQIVRELELKLQVVMSFHECGGNVGDDVHIPLPQWVMEIGQNNPEIYFTDREGRRNSECLTWG 237 (562)
Q Consensus 161 ~~p~~YdW---s~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVGD~~~IpLP~WV~e~g~~~pDI~~tDr~G~rn~E~lSl~ 237 (562)
..++.||| .+-+-+++.|++.|.+. ++.| .+ ++|.|...-|..- .+.....+|.
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~--f~aF----------SN-SPP~~MT~NG~~~--------g~~~~~~NLk-- 149 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNI--FEAF----------SN-SPPWWMTKNGSAS--------GGDDGSDNLK-- 149 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT-----EEEE-----------S-SS-GGGSSSSSSB---------S-SSS-SS---
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCe--EEEe----------ec-CCCHHHhcCCCCC--------CCCccccccC--
Confidence 36899999 67778899999999998 7777 22 5888887433321 1111133333
Q ss_pred cCcccccCCCchhHHHHHHHHHHHHHHhhhhcCceEEEE
Q 008542 238 IDKERVLRGRTAVEVYFDYMRSFRVEFNEFFVDGIIAEI 276 (562)
Q Consensus 238 ~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~vI~eI 276 (562)
.|. .+.|.+||....++| +-.| =.|+-|
T Consensus 150 ~d~---------y~~FA~YLa~Vv~~~-~~~G-I~f~~I 177 (384)
T PF14587_consen 150 PDN---------YDAFADYLADVVKHY-KKWG-INFDYI 177 (384)
T ss_dssp TT----------HHHHHHHHHHHHHHH-HCTT---EEEE
T ss_pred hhH---------HHHHHHHHHHHHHHH-HhcC-Ccccee
Confidence 333 789999999999999 4445 244444
No 260
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.36 E-value=1.4e+02 Score=30.12 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeecCCCccccchhHHHHHHHHHHcCCcEEEE
Q 008542 133 ILVNQLKILKSINVDGVMVDCWWGIVEAHTPQVYNWSGYRRLFQIVRELELKLQVV 188 (562)
Q Consensus 133 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mvr~~GLKvqvv 188 (562)
.+...++.+-.+|+++|.+-+.+|. + .+.++- .--.++.+++++.|+.+.++
T Consensus 91 ~~~~~v~~al~~Ga~~v~~~~~~g~-~--~~~~~~-~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 91 RIVTTVEDAIRMGADAVSIHVNVGS-D--TEWEQI-RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred eeeeeHHHHHHCCCCEEEEEEecCC-c--hHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 4556688888999999999998774 1 112222 45566667778889988653
No 261
>PRK10426 alpha-glucosidase; Provisional
Probab=20.25 E-value=4.3e+02 Score=30.85 Aligned_cols=87 Identities=14% Similarity=0.278 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeeeeec-CCCcc---ccc-----hhHHHHHHHHHHcCCcEEEEEeeeccCCCCC
Q 008542 131 PEILVNQLKILKSIN--VDGVMVDCWWGIVEA-HTPQV---YNW-----SGYRRLFQIVRELELKLQVVMSFHECGGNVG 199 (562)
Q Consensus 131 ~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~-~~p~~---YdW-----s~Y~~l~~mvr~~GLKvqvvmsFHqCGGNVG 199 (562)
.+.+.+-++++++.| +|+|.+|-|-+.-.. .+.+. |.| ..-+++++-+++.|+|+.+++-=|
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~------- 292 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPY------- 292 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCc-------
Confidence 467888899999877 688888876443221 11111 222 345788888999999995444332
Q ss_pred CCCcCCCChhHHhhhccCCCeeeeCCCCCc
Q 008542 200 DDVHIPLPQWVMEIGQNNPEIYFTDREGRR 229 (562)
Q Consensus 200 D~~~IpLP~WV~e~g~~~pDI~~tDr~G~r 229 (562)
|..-.-+-+++.+ -+.|.+|.+|..
T Consensus 293 ----v~~~~~~y~e~~~-~gy~vk~~~g~~ 317 (635)
T PRK10426 293 ----LASDGDLCEEAAE-KGYLAKDADGGD 317 (635)
T ss_pred ----cCCCCHHHHHHHH-CCcEEECCCCCE
Confidence 2221223445554 489999999874
No 262
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=20.13 E-value=1.5e+02 Score=30.69 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHcCcEEEEeeccc
Q 008542 421 DGYAPIAAMLKKHGVALNFTCVEL 444 (562)
Q Consensus 421 dGY~~Ia~mf~kh~~~l~FTClEM 444 (562)
+++..|+++|+++|+..+|=++..
T Consensus 28 ~nt~riL~lL~~~gikATFFv~g~ 51 (265)
T TIGR03006 28 RNTDRILDLLDRHGVKATFFTLGW 51 (265)
T ss_pred HhHHHHHHHHHHcCCcEEEEEecc
Confidence 468899999999999999998753
Done!