Query 008544
Match_columns 562
No_of_seqs 412 out of 2368
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 13:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02501 digalactosyldiacylgly 100.0 4.3E-87 9.4E-92 701.9 45.9 491 20-512 295-791 (794)
2 PLN02846 digalactosyldiacylgly 100.0 3.1E-74 6.7E-79 600.5 43.5 458 49-506 4-461 (462)
3 PLN02871 UDP-sulfoquinovose:DA 100.0 8E-36 1.7E-40 320.5 31.4 358 47-441 56-439 (465)
4 cd03796 GT1_PIG-A_like This fa 100.0 8.3E-36 1.8E-40 314.4 30.2 350 51-439 1-370 (398)
5 PRK10307 putative glycosyl tra 100.0 2.5E-34 5.4E-39 304.6 30.7 373 50-438 1-409 (412)
6 PRK00654 glgA glycogen synthas 100.0 3.1E-34 6.8E-39 307.8 28.4 367 50-438 1-464 (466)
7 TIGR03449 mycothiol_MshA UDP-N 100.0 6.7E-34 1.5E-38 300.6 30.5 363 52-438 1-403 (405)
8 cd04962 GT1_like_5 This family 100.0 8.3E-34 1.8E-38 295.7 29.7 350 50-436 1-370 (371)
9 cd03814 GT1_like_2 This family 100.0 4.6E-33 1E-37 287.6 30.8 347 51-435 1-364 (364)
10 TIGR03088 stp2 sugar transfera 100.0 5.2E-33 1.1E-37 290.6 29.9 345 50-437 2-373 (374)
11 TIGR02095 glgA glycogen/starch 100.0 1E-32 2.2E-37 297.2 29.9 376 50-436 1-472 (473)
12 KOG1111 N-acetylglucosaminyltr 100.0 7.1E-34 1.5E-38 274.5 18.6 352 50-443 1-373 (426)
13 PLN02316 synthase/transferase 100.0 3.7E-32 8E-37 303.7 32.0 366 47-438 585-1035(1036)
14 cd03792 GT1_Trehalose_phosphor 100.0 4.2E-32 9.1E-37 283.6 30.0 345 51-436 1-371 (372)
15 PRK15427 colanic acid biosynth 100.0 6.5E-32 1.4E-36 284.5 31.5 266 153-436 110-405 (406)
16 PLN02939 transferase, transfer 100.0 4E-32 8.7E-37 297.9 29.6 388 47-438 479-968 (977)
17 TIGR02149 glgA_Coryne glycogen 100.0 3.2E-32 6.9E-37 285.9 27.4 349 50-437 1-387 (388)
18 TIGR02472 sucr_P_syn_N sucrose 100.0 3.3E-32 7.1E-37 290.2 27.5 353 60-434 22-438 (439)
19 PRK14099 glycogen synthase; Pr 100.0 1.9E-32 4.2E-37 293.5 25.4 381 48-438 2-480 (485)
20 TIGR02468 sucrsPsyn_pln sucros 100.0 5.2E-32 1.1E-36 301.5 29.2 385 46-441 166-675 (1050)
21 cd03817 GT1_UGDG_like This fam 100.0 2.2E-31 4.9E-36 275.3 31.7 353 51-436 1-373 (374)
22 cd03805 GT1_ALG2_like This fam 100.0 2.5E-31 5.4E-36 279.5 29.9 348 50-430 1-392 (392)
23 cd03802 GT1_AviGT4_like This f 100.0 4.1E-31 8.9E-36 271.2 29.2 320 50-435 1-335 (335)
24 PRK15179 Vi polysaccharide bio 100.0 5.8E-31 1.3E-35 288.6 32.0 279 150-436 389-693 (694)
25 cd03816 GT1_ALG1_like This fam 100.0 4E-31 8.8E-36 279.7 29.4 360 49-431 3-411 (415)
26 PRK14098 glycogen synthase; Pr 100.0 1.3E-31 2.8E-36 287.4 25.3 381 48-438 4-487 (489)
27 cd03791 GT1_Glycogen_synthase_ 100.0 6.5E-31 1.4E-35 283.7 29.6 367 51-436 1-476 (476)
28 PRK15484 lipopolysaccharide 1, 100.0 1.1E-30 2.4E-35 273.3 30.3 254 158-437 96-378 (380)
29 cd03818 GT1_ExpC_like This fam 100.0 1.3E-30 2.9E-35 274.6 29.2 350 51-432 1-396 (396)
30 cd03801 GT1_YqgM_like This fam 100.0 3.7E-30 8E-35 264.3 31.5 352 51-435 1-374 (374)
31 cd03820 GT1_amsD_like This fam 100.0 3.1E-30 6.7E-35 263.5 29.9 329 51-431 1-347 (348)
32 cd03821 GT1_Bme6_like This fam 100.0 5.5E-30 1.2E-34 264.7 31.9 353 51-432 1-375 (375)
33 cd03813 GT1_like_3 This family 100.0 2.1E-30 4.4E-35 278.9 28.8 267 160-435 172-475 (475)
34 cd03812 GT1_CapH_like This fam 100.0 2.9E-30 6.3E-35 267.4 28.9 328 51-418 1-343 (358)
35 cd03800 GT1_Sucrose_synthase T 100.0 2.8E-30 6E-35 271.5 28.2 356 51-431 8-397 (398)
36 TIGR02470 sucr_synth sucrose s 100.0 4.4E-30 9.6E-35 281.1 30.3 272 160-434 384-745 (784)
37 cd04951 GT1_WbdM_like This fam 100.0 9.3E-30 2E-34 263.5 30.8 338 51-435 1-359 (360)
38 cd03807 GT1_WbnK_like This fam 100.0 1.1E-29 2.3E-34 261.6 29.4 342 51-435 1-365 (365)
39 PRK09922 UDP-D-galactose:(gluc 100.0 8.7E-30 1.9E-34 264.8 28.5 331 50-438 1-357 (359)
40 cd04955 GT1_like_6 This family 100.0 1.3E-29 2.8E-34 262.9 29.3 342 51-435 1-363 (363)
41 cd05844 GT1_like_7 Glycosyltra 100.0 6.3E-30 1.4E-34 266.0 27.0 339 51-432 1-366 (367)
42 cd03794 GT1_wbuB_like This fam 100.0 1.5E-29 3.2E-34 262.7 28.5 358 51-430 1-393 (394)
43 cd03822 GT1_ecORF704_like This 100.0 1.5E-29 3.2E-34 261.8 28.2 337 51-435 1-366 (366)
44 cd03795 GT1_like_4 This family 100.0 1.7E-29 3.7E-34 261.2 28.2 331 51-426 1-356 (357)
45 TIGR03087 stp1 sugar transfera 100.0 4.5E-29 9.7E-34 263.1 30.6 361 52-436 1-396 (397)
46 PLN00142 sucrose synthase 100.0 2.6E-29 5.6E-34 275.0 28.1 273 160-435 407-769 (815)
47 cd03798 GT1_wlbH_like This fam 100.0 1.3E-28 2.9E-33 253.7 31.6 354 52-436 1-376 (377)
48 PRK15490 Vi polysaccharide bio 100.0 1.9E-29 4.1E-34 264.6 25.2 275 150-437 269-576 (578)
49 cd03808 GT1_cap1E_like This fa 100.0 1E-28 2.3E-33 253.3 29.8 335 51-431 1-358 (359)
50 cd03825 GT1_wcfI_like This fam 100.0 6.8E-29 1.5E-33 257.5 28.0 317 50-436 1-364 (365)
51 cd03823 GT1_ExpE7_like This fa 100.0 8.8E-29 1.9E-33 254.9 27.9 340 51-435 1-358 (359)
52 cd03819 GT1_WavL_like This fam 100.0 7.1E-29 1.5E-33 256.7 26.5 314 64-425 10-354 (355)
53 cd03799 GT1_amsK_like This is 100.0 9.2E-29 2E-33 255.5 27.2 326 51-430 1-355 (355)
54 cd03809 GT1_mtfB_like This fam 100.0 3.6E-29 7.8E-34 258.8 24.0 343 51-432 1-365 (365)
55 TIGR02918 accessory Sec system 100.0 1.1E-28 2.4E-33 264.4 24.8 266 155-436 205-499 (500)
56 PLN02949 transferase, transfer 100.0 3.4E-27 7.4E-32 250.6 34.1 207 225-438 220-458 (463)
57 PRK10125 putative glycosyl tra 100.0 1.2E-27 2.6E-32 251.4 29.8 349 50-436 1-404 (405)
58 cd03806 GT1_ALG11_like This fa 100.0 4.2E-28 9.1E-33 256.6 26.1 260 159-428 105-418 (419)
59 cd03811 GT1_WabH_like This fam 100.0 1.5E-27 3.2E-32 243.9 29.0 318 51-411 1-335 (353)
60 PLN02275 transferase, transfer 100.0 1.5E-27 3.2E-32 249.0 27.5 244 157-406 96-371 (371)
61 cd04946 GT1_AmsK_like This fam 100.0 5.3E-26 1.2E-30 240.0 31.0 254 159-431 125-406 (407)
62 cd03804 GT1_wbaZ_like This fam 99.9 8.1E-26 1.8E-30 234.2 28.9 252 153-430 75-350 (351)
63 cd04949 GT1_gtfA_like This fam 99.9 7.4E-26 1.6E-30 236.3 20.4 257 159-430 97-372 (372)
64 PHA01630 putative group 1 glyc 99.9 7.8E-25 1.7E-29 223.4 20.4 221 188-436 71-330 (331)
65 PHA01633 putative glycosyl tra 99.9 2.8E-23 6E-28 209.8 22.8 221 187-432 71-335 (335)
66 PRK00726 murG undecaprenyldiph 99.9 1.3E-21 2.9E-26 203.2 21.7 331 50-434 2-355 (357)
67 cd03785 GT1_MurG MurG is an N- 99.9 2E-21 4.3E-26 201.1 22.2 239 150-418 78-336 (350)
68 PRK13609 diacylglycerol glucos 99.9 1.5E-21 3.2E-26 204.6 21.5 341 50-438 5-373 (380)
69 cd03793 GT1_Glycogen_synthase_ 99.9 8.5E-21 1.8E-25 199.8 23.9 281 152-438 139-588 (590)
70 TIGR01133 murG undecaprenyldip 99.9 7.2E-21 1.6E-25 196.8 22.8 238 150-418 79-333 (348)
71 COG0297 GlgA Glycogen synthase 99.9 1.1E-20 2.4E-25 198.2 24.2 378 50-440 1-481 (487)
72 cd01635 Glycosyltransferase_GT 99.9 2.9E-20 6.3E-25 178.8 24.0 222 52-392 1-229 (229)
73 PRK05749 3-deoxy-D-manno-octul 99.9 1.3E-20 2.8E-25 200.5 23.5 272 152-438 115-421 (425)
74 cd03788 GT1_TPS Trehalose-6-Ph 99.9 1.8E-21 3.8E-26 207.9 14.3 260 161-433 131-458 (460)
75 PF00534 Glycos_transf_1: Glyc 99.9 4.3E-21 9.3E-26 177.8 12.7 156 263-418 5-170 (172)
76 cd04950 GT1_like_1 Glycosyltra 99.8 4.9E-19 1.1E-23 185.0 28.1 257 159-436 100-371 (373)
77 PRK13608 diacylglycerol glucos 99.8 1.5E-19 3.3E-24 189.8 21.7 258 150-438 93-373 (391)
78 PLN02605 monogalactosyldiacylg 99.8 1.3E-19 2.9E-24 189.8 20.3 259 151-433 90-378 (382)
79 TIGR02400 trehalose_OtsA alpha 99.8 4.5E-19 9.8E-24 188.0 20.6 257 162-434 128-454 (456)
80 PLN03063 alpha,alpha-trehalose 99.8 1.4E-18 3E-23 195.4 15.2 266 162-439 148-480 (797)
81 TIGR00236 wecB UDP-N-acetylglu 99.7 3.2E-16 7E-21 163.3 23.2 264 150-432 75-363 (365)
82 cd03786 GT1_UDP-GlcNAc_2-Epime 99.7 2.1E-16 4.6E-21 164.4 20.2 262 150-433 77-361 (363)
83 KOG0853 Glycosyltransferase [C 99.7 1E-16 2.2E-21 165.9 14.5 212 226-438 210-469 (495)
84 PRK14501 putative bifunctional 99.7 9.9E-17 2.1E-21 180.7 15.7 264 162-439 134-465 (726)
85 PRK00025 lpxB lipid-A-disaccha 99.7 5.3E-16 1.1E-20 162.6 20.2 246 149-417 73-352 (380)
86 KOG1387 Glycosyltransferase [C 99.7 4.5E-14 9.8E-19 136.7 28.1 271 156-438 145-460 (465)
87 KOG2941 Beta-1,4-mannosyltrans 99.7 2.6E-14 5.6E-19 138.5 25.0 362 44-432 8-437 (444)
88 PRK09814 beta-1,6-galactofuran 99.7 3.7E-15 8E-20 153.2 20.7 236 154-418 56-310 (333)
89 PF13692 Glyco_trans_1_4: Glyc 99.6 3.1E-16 6.7E-21 139.1 8.5 131 273-408 2-135 (135)
90 COG0438 RfaG Glycosyltransfera 99.6 3.7E-14 8E-19 143.9 24.3 206 226-438 151-378 (381)
91 TIGR00215 lpxB lipid-A-disacch 99.5 3.4E-13 7.4E-18 141.1 18.8 204 150-376 78-293 (385)
92 TIGR02398 gluc_glyc_Psyn gluco 99.5 4.5E-13 9.7E-18 141.8 19.5 160 272-434 284-480 (487)
93 TIGR02094 more_P_ylases alpha- 99.5 1.5E-11 3.3E-16 134.0 24.8 166 269-435 385-599 (601)
94 TIGR03713 acc_sec_asp1 accesso 99.4 5.7E-13 1.2E-17 143.3 13.1 157 273-433 319-518 (519)
95 PLN03064 alpha,alpha-trehalose 99.4 1.1E-11 2.5E-16 139.2 21.2 262 162-438 232-563 (934)
96 PF13524 Glyco_trans_1_2: Glyc 99.2 1.6E-11 3.5E-16 101.1 6.1 85 348-432 1-92 (92)
97 PRK12446 undecaprenyldiphospho 99.2 1.9E-09 4.2E-14 111.4 22.5 250 150-434 80-349 (352)
98 COG0707 MurG UDP-N-acetylgluco 99.2 3.2E-09 6.9E-14 108.9 22.6 239 149-418 79-336 (357)
99 PF05693 Glycogen_syn: Glycoge 99.2 1.6E-09 3.5E-14 114.4 19.6 103 338-440 462-585 (633)
100 TIGR03590 PseG pseudaminic aci 99.1 1.2E-08 2.7E-13 101.9 19.9 261 51-377 1-268 (279)
101 cd04299 GT1_Glycogen_Phosphory 99.1 2.2E-08 4.8E-13 111.4 23.0 165 270-435 475-688 (778)
102 COG1519 KdtA 3-deoxy-D-manno-o 99.0 1.8E-07 3.9E-12 95.1 24.0 250 153-418 115-398 (419)
103 TIGR02919 accessory Sec system 99.0 7.3E-09 1.6E-13 109.2 13.9 126 273-411 282-414 (438)
104 cd03784 GT1_Gtf_like This fami 98.9 1.6E-07 3.5E-12 99.2 21.5 121 273-409 240-373 (401)
105 PF13439 Glyco_transf_4: Glyco 98.8 6.2E-09 1.3E-13 95.7 7.1 167 54-255 2-176 (177)
106 TIGR03492 conserved hypothetic 98.8 1.3E-07 2.9E-12 99.2 17.4 241 152-411 82-367 (396)
107 PF13528 Glyco_trans_1_3: Glyc 98.8 2.2E-07 4.8E-12 94.8 18.4 113 273-405 193-317 (318)
108 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.9E-06 4.1E-11 89.6 23.5 261 150-433 82-364 (365)
109 PF00982 Glyco_transf_20: Glyc 98.7 4.5E-07 9.8E-12 96.6 16.7 262 161-434 141-472 (474)
110 PRK10117 trehalose-6-phosphate 98.7 6.8E-07 1.5E-11 94.2 17.2 164 272-438 254-455 (474)
111 COG3914 Spy Predicted O-linked 98.6 3.1E-06 6.7E-11 88.6 19.9 265 152-438 326-615 (620)
112 COG0381 WecB UDP-N-acetylgluco 98.5 1.9E-05 4.1E-10 80.0 21.9 345 49-435 3-369 (383)
113 TIGR01426 MGT glycosyltransfer 98.5 6.1E-05 1.3E-09 79.3 26.0 125 274-410 227-361 (392)
114 PF02684 LpxB: Lipid-A-disacch 98.4 4.3E-06 9.3E-11 86.1 14.3 241 150-411 71-343 (373)
115 COG0380 OtsA Trehalose-6-phosp 98.4 3.4E-05 7.3E-10 81.2 20.4 261 163-436 149-479 (486)
116 PF13579 Glyco_trans_4_4: Glyc 98.4 2E-06 4.4E-11 77.4 10.1 139 64-239 1-143 (160)
117 PF13477 Glyco_trans_4_2: Glyc 98.3 7E-06 1.5E-10 72.8 11.5 137 51-233 1-139 (139)
118 PF13844 Glyco_transf_41: Glyc 98.3 7.8E-06 1.7E-10 85.9 13.5 169 264-436 276-466 (468)
119 TIGR00661 MJ1255 conserved hyp 98.3 0.00013 2.8E-09 74.6 22.2 117 274-410 190-316 (321)
120 PLN02205 alpha,alpha-trehalose 98.3 2.5E-05 5.4E-10 89.0 18.3 163 272-437 338-552 (854)
121 PHA03392 egt ecdysteroid UDP-g 98.3 0.00026 5.6E-09 76.8 25.0 126 273-410 297-434 (507)
122 PF04007 DUF354: Protein of un 98.3 0.00017 3.7E-09 73.4 21.8 217 150-408 72-310 (335)
123 COG3980 spsG Spore coat polysa 98.1 0.00012 2.5E-09 70.6 15.9 246 50-371 1-248 (318)
124 PF02350 Epimerase_2: UDP-N-ac 98.1 1.8E-05 3.9E-10 81.6 11.5 242 150-408 56-318 (346)
125 PF09314 DUF1972: Domain of un 98.1 7.7E-05 1.7E-09 68.9 13.4 163 50-243 2-171 (185)
126 COG0763 LpxB Lipid A disacchar 98.0 1.7E-05 3.7E-10 80.1 9.0 207 151-376 75-290 (381)
127 PRK01021 lpxB lipid-A-disaccha 97.9 0.00013 2.9E-09 78.6 13.3 202 150-376 299-514 (608)
128 COG1819 Glycosyl transferases, 97.9 0.00029 6.4E-09 74.2 15.0 120 277-411 242-371 (406)
129 PRK02797 4-alpha-L-fucosyltran 97.5 0.019 4.2E-07 56.8 19.6 268 156-440 34-320 (322)
130 PF08323 Glyco_transf_5: Starc 97.5 0.00033 7.3E-09 68.6 7.6 43 51-94 1-45 (245)
131 COG1817 Uncharacterized protei 97.3 0.068 1.5E-06 52.7 21.6 219 150-410 73-316 (346)
132 COG4641 Uncharacterized protei 97.3 0.01 2.2E-07 60.0 15.9 101 336-436 248-361 (373)
133 COG3660 Predicted nucleoside-d 97.3 0.046 1E-06 52.5 19.2 188 158-378 67-274 (329)
134 PRK14089 ipid-A-disaccharide s 97.0 0.0059 1.3E-07 62.7 11.6 91 274-376 169-261 (347)
135 COG4671 Predicted glycosyl tra 96.8 0.11 2.5E-06 52.1 17.4 130 273-409 220-366 (400)
136 PF04101 Glyco_tran_28_C: Glyc 96.2 0.0002 4.4E-09 65.7 -5.0 103 304-411 31-147 (167)
137 PF07429 Glyco_transf_56: 4-al 96.2 0.34 7.4E-06 48.9 17.3 156 273-437 184-356 (360)
138 cd03789 GT1_LPS_heptosyltransf 96.1 0.62 1.3E-05 46.4 19.1 98 275-379 124-227 (279)
139 KOG3742 Glycogen synthase [Car 96.1 0.0023 4.9E-08 65.2 1.2 101 338-438 493-614 (692)
140 COG0859 RfaF ADP-heptose:LPS h 95.8 1.3 2.7E-05 45.6 20.2 99 273-379 176-280 (334)
141 PF12038 DUF3524: Domain of un 95.8 0.09 1.9E-06 47.3 9.8 79 154-238 52-132 (168)
142 PRK10422 lipopolysaccharide co 95.7 3.1 6.8E-05 42.9 24.3 100 273-379 184-291 (352)
143 PF06258 Mito_fiss_Elm1: Mitoc 95.5 0.38 8.3E-06 48.7 14.6 103 273-379 147-259 (311)
144 PF04464 Glyphos_transf: CDP-G 94.8 0.16 3.4E-06 53.0 9.8 178 226-411 135-339 (369)
145 PF00201 UDPGT: UDP-glucoronos 94.8 0.21 4.6E-06 54.3 11.2 125 273-409 277-410 (500)
146 PF05159 Capsule_synth: Capsul 94.7 0.49 1.1E-05 46.9 12.7 99 273-378 117-227 (269)
147 PRK10017 colanic acid biosynth 94.6 7.6 0.00016 41.3 23.1 116 289-411 260-395 (426)
148 PF15024 Glyco_transf_18: Glyc 93.9 0.44 9.5E-06 51.2 10.7 150 273-436 277-455 (559)
149 PLN02448 UDP-glycosyltransfera 92.9 2.7 5.8E-05 45.3 15.0 127 273-409 275-416 (459)
150 PRK14986 glycogen phosphorylas 92.7 0.52 1.1E-05 53.2 9.3 133 269-401 539-703 (815)
151 PLN02670 transferase, transfer 92.5 2.4 5.3E-05 45.6 13.9 100 334-435 344-464 (472)
152 PF12000 Glyco_trans_4_3: Gkyc 92.4 0.72 1.6E-05 42.2 8.3 91 159-255 64-170 (171)
153 KOG4626 O-linked N-acetylgluco 92.0 2.3 5E-05 46.0 12.5 170 264-437 750-941 (966)
154 PF10087 DUF2325: Uncharacteri 91.6 1.4 3.1E-05 36.2 8.6 73 307-379 2-85 (97)
155 PLN02410 UDP-glucoronosyl/UDP- 90.9 5.6 0.00012 42.6 14.5 72 335-410 330-412 (451)
156 cd04300 GT1_Glycogen_Phosphory 90.7 0.96 2.1E-05 51.1 8.7 131 269-400 526-689 (797)
157 PF11997 DUF3492: Domain of un 90.7 2.5 5.4E-05 41.9 10.8 77 161-239 172-259 (268)
158 TIGR02195 heptsyl_trn_II lipop 90.5 3.1 6.7E-05 42.6 11.9 99 274-379 176-280 (334)
159 PF00343 Phosphorylase: Carboh 90.0 3.6 7.8E-05 46.0 12.3 131 269-399 440-602 (713)
160 PLN02562 UDP-glycosyltransfera 90.0 3.9 8.4E-05 43.8 12.4 73 335-409 334-414 (448)
161 PLN03004 UDP-glycosyltransfera 89.5 2.6 5.6E-05 45.2 10.4 74 333-408 338-424 (451)
162 PLN02173 UDP-glucosyl transfer 88.7 3.9 8.4E-05 43.8 11.1 74 335-410 323-410 (449)
163 COG0058 GlgP Glucan phosphoryl 88.6 2.2 4.7E-05 47.8 9.3 123 271-393 485-629 (750)
164 PLN00164 glucosyltransferase; 88.5 11 0.00024 40.8 14.6 76 333-410 343-433 (480)
165 PF01075 Glyco_transf_9: Glyco 88.4 2.2 4.8E-05 41.4 8.6 99 273-378 106-211 (247)
166 PF11440 AGT: DNA alpha-glucos 88.1 29 0.00062 34.2 22.9 292 64-408 1-353 (355)
167 TIGR02193 heptsyl_trn_I lipopo 87.8 8.7 0.00019 38.9 12.8 126 273-406 180-319 (319)
168 PLN03007 UDP-glucosyltransfera 87.8 14 0.0003 40.0 14.9 75 334-410 350-442 (482)
169 PLN00414 glycosyltransferase f 87.5 7.2 0.00016 41.7 12.3 132 273-410 253-404 (446)
170 PLN02208 glycosyltransferase f 87.5 12 0.00025 40.1 13.8 131 273-410 252-403 (442)
171 PRK14985 maltodextrin phosphor 87.3 1.5 3.3E-05 49.3 7.2 131 270-400 526-688 (798)
172 TIGR02093 P_ylase glycogen/sta 86.0 1.7 3.8E-05 49.0 6.8 131 270-401 524-687 (794)
173 PLN02764 glycosyltransferase f 85.9 19 0.00041 38.6 14.3 132 272-409 257-408 (453)
174 PLN02210 UDP-glucosyl transfer 85.8 12 0.00025 40.3 12.8 130 273-410 270-417 (456)
175 PLN02555 limonoid glucosyltran 85.8 7.6 0.00016 42.0 11.4 79 335-417 343-439 (480)
176 PLN02152 indole-3-acetate beta 85.8 13 0.00029 39.8 13.2 80 335-416 333-425 (455)
177 TIGR03609 S_layer_CsaB polysac 84.6 9.7 0.00021 38.2 11.1 142 226-377 128-277 (298)
178 PLN02167 UDP-glycosyltransfera 83.6 16 0.00036 39.4 12.9 71 335-409 346-435 (475)
179 PLN02554 UDP-glycosyltransfera 82.1 18 0.0004 39.1 12.5 69 335-407 348-439 (481)
180 PLN02863 UDP-glucoronosyl/UDP- 82.1 29 0.00062 37.6 13.9 70 334-407 348-432 (477)
181 PLN02207 UDP-glycosyltransfera 81.2 31 0.00067 37.2 13.7 72 335-408 338-426 (468)
182 PRK10964 ADP-heptose:LPS hepto 81.0 29 0.00062 35.2 13.0 95 277-379 183-282 (322)
183 PRK10916 ADP-heptose:LPS hepto 79.9 13 0.00029 38.2 10.2 98 274-378 182-289 (348)
184 TIGR02201 heptsyl_trn_III lipo 78.0 23 0.00049 36.3 11.2 99 273-378 182-288 (344)
185 PF03016 Exostosin: Exostosin 77.7 3 6.5E-05 41.8 4.5 65 338-402 229-299 (302)
186 PRK05380 pyrG CTP synthetase; 77.6 1.1E+02 0.0025 33.3 19.9 76 304-379 288-382 (533)
187 PLN02327 CTP synthase 76.9 1.2E+02 0.0026 33.2 19.0 76 304-379 297-401 (557)
188 PLN02992 coniferyl-alcohol glu 76.5 27 0.00059 37.7 11.6 76 333-410 342-429 (481)
189 TIGR01012 Sa_S2_E_A ribosomal 75.7 16 0.00034 34.2 8.3 97 285-383 43-147 (196)
190 PF01408 GFO_IDH_MocA: Oxidore 74.0 22 0.00048 29.9 8.4 74 299-378 20-95 (120)
191 PLN02534 UDP-glycosyltransfera 72.9 51 0.0011 35.8 12.5 72 334-407 349-443 (491)
192 PRK04020 rps2P 30S ribosomal p 71.8 18 0.0004 34.1 7.7 97 285-383 49-153 (204)
193 PF06925 MGDG_synth: Monogalac 71.6 5.3 0.00011 36.4 4.1 71 150-239 78-151 (169)
194 COG1887 TagB Putative glycosyl 70.9 94 0.002 32.6 13.6 138 267-411 202-356 (388)
195 PF00862 Sucrose_synth: Sucros 70.8 11 0.00024 40.2 6.6 35 159-196 399-434 (550)
196 KOG3349 Predicted glycosyltran 69.2 25 0.00055 31.2 7.4 95 274-377 5-108 (170)
197 PTZ00254 40S ribosomal protein 66.3 30 0.00064 33.7 8.0 99 284-383 51-157 (249)
198 PRK13397 3-deoxy-7-phosphohept 66.3 1.4E+02 0.0029 29.3 13.2 112 283-410 23-150 (250)
199 COG1927 Mtd Coenzyme F420-depe 65.3 61 0.0013 30.4 9.3 98 275-392 6-114 (277)
200 PLN03015 UDP-glucosyl transfer 64.8 55 0.0012 35.3 10.7 72 334-407 340-425 (470)
201 TIGR00337 PyrG CTP synthase. C 64.1 2.2E+02 0.0048 31.0 19.5 76 304-379 289-382 (525)
202 TIGR01361 DAHP_synth_Bsub phos 62.7 1.2E+02 0.0026 29.8 11.9 118 278-409 28-159 (260)
203 PF04230 PS_pyruv_trans: Polys 62.4 1E+02 0.0022 29.5 11.6 86 287-377 191-284 (286)
204 KOG1050 Trehalose-6-phosphate 62.2 1.1E+02 0.0024 34.9 12.7 138 271-411 274-443 (732)
205 TIGR00288 conserved hypothetic 61.6 45 0.00098 30.1 7.8 65 287-352 90-155 (160)
206 PF08288 PIGA: PIGA (GPI ancho 59.6 10 0.00022 30.3 3.0 44 152-197 41-86 (90)
207 PF02670 DXP_reductoisom: 1-de 58.5 48 0.001 28.8 7.2 88 284-376 32-121 (129)
208 PF01113 DapB_N: Dihydrodipico 58.5 17 0.00037 31.2 4.6 44 336-379 58-101 (124)
209 cd01967 Nitrogenase_MoFe_alpha 58.3 2.1E+02 0.0046 30.0 13.8 111 284-408 134-258 (406)
210 PF01975 SurE: Survival protei 57.9 14 0.00031 34.6 4.2 37 50-92 1-37 (196)
211 PRK13398 3-deoxy-7-phosphohept 57.2 2E+02 0.0044 28.4 14.8 116 277-408 29-160 (266)
212 PRK15438 erythronate-4-phospha 57.1 69 0.0015 33.4 9.5 77 303-379 115-210 (378)
213 TIGR01286 nifK nitrogenase mol 56.2 2.6E+02 0.0056 30.6 14.1 117 278-409 188-338 (515)
214 cd01080 NAD_bind_m-THF_DH_Cycl 54.9 54 0.0012 29.9 7.4 86 290-379 30-117 (168)
215 cd00027 BRCT Breast Cancer Sup 54.5 63 0.0014 23.3 6.8 62 305-376 2-65 (72)
216 PRK05447 1-deoxy-D-xylulose 5- 54.3 52 0.0011 34.3 7.9 88 284-378 35-124 (385)
217 PRK13396 3-deoxy-7-phosphohept 53.8 2.7E+02 0.0059 28.7 13.4 120 274-410 101-236 (352)
218 PRK08410 2-hydroxyacid dehydro 53.6 78 0.0017 32.0 9.1 56 337-404 188-248 (311)
219 PF10686 DUF2493: Protein of u 53.6 1E+02 0.0022 23.7 8.1 61 273-334 3-64 (71)
220 KOG0832 Mitochondrial/chloropl 53.2 84 0.0018 30.0 8.3 100 273-383 108-212 (251)
221 PF13407 Peripla_BP_4: Peripla 52.9 1.2E+02 0.0026 29.0 10.2 34 345-378 55-89 (257)
222 COG2984 ABC-type uncharacteriz 52.2 74 0.0016 32.1 8.3 80 299-378 153-248 (322)
223 PF02826 2-Hacid_dh_C: D-isome 52.1 61 0.0013 29.7 7.4 74 305-378 37-129 (178)
224 PRK06932 glycerate dehydrogena 51.8 77 0.0017 32.2 8.7 74 305-378 148-235 (314)
225 PRK06487 glycerate dehydrogena 51.7 72 0.0016 32.4 8.5 75 304-378 148-235 (317)
226 KOG1192 UDP-glucuronosyl and U 51.4 2.2E+02 0.0047 30.6 12.9 53 357-410 363-424 (496)
227 COG2327 WcaK Polysaccharide py 50.2 3.2E+02 0.007 28.5 21.5 194 212-411 140-353 (385)
228 PRK08673 3-deoxy-7-phosphohept 49.0 3.1E+02 0.0068 28.1 13.2 116 279-410 97-228 (335)
229 TIGR01088 aroQ 3-dehydroquinat 49.0 49 0.0011 29.1 5.7 90 317-406 31-138 (141)
230 PLN02928 oxidoreductase family 47.9 88 0.0019 32.3 8.5 44 335-378 216-264 (347)
231 PF03033 Glyco_transf_28: Glyc 47.7 19 0.00041 31.1 3.2 20 70-90 15-34 (139)
232 cd01425 RPS2 Ribosomal protein 47.3 2.1E+02 0.0045 26.7 10.2 75 304-379 56-161 (193)
233 COG3414 SgaB Phosphotransferas 47.0 40 0.00087 27.5 4.6 81 307-407 5-92 (93)
234 PRK13015 3-dehydroquinate dehy 46.6 1.6E+02 0.0035 26.1 8.6 91 317-407 33-141 (146)
235 PF08660 Alg14: Oligosaccharid 46.0 1.4E+02 0.0031 27.2 8.8 77 150-239 81-160 (170)
236 KOG1021 Acetylglucosaminyltran 45.9 54 0.0012 35.3 6.9 71 336-407 334-408 (464)
237 TIGR01761 thiaz-red thiazoliny 45.5 1.9E+02 0.0041 29.8 10.5 91 273-377 3-98 (343)
238 COG0673 MviM Predicted dehydro 44.7 1.3E+02 0.0029 30.4 9.4 68 305-377 30-99 (342)
239 PRK13302 putative L-aspartate 44.4 1.6E+02 0.0034 29.2 9.4 71 302-377 29-99 (271)
240 COG2247 LytB Putative cell wal 43.7 1.5E+02 0.0032 30.0 8.7 77 300-378 73-164 (337)
241 COG1830 FbaB DhnA-type fructos 43.2 1.5E+02 0.0032 29.2 8.6 41 275-315 116-156 (265)
242 COG4567 Response regulator con 42.4 1.4E+02 0.003 26.9 7.4 126 302-430 7-151 (182)
243 COG0052 RpsB Ribosomal protein 42.2 1.1E+02 0.0024 29.7 7.5 25 359-383 169-195 (252)
244 PRK05395 3-dehydroquinate dehy 42.0 58 0.0013 28.8 5.1 90 317-406 33-140 (146)
245 COG1553 DsrE Uncharacterized c 41.2 46 0.001 28.5 4.2 40 50-90 1-40 (126)
246 PRK00994 F420-dependent methyl 41.2 2.3E+02 0.005 27.4 9.2 97 275-391 6-113 (277)
247 KOG2842 Interferon-related pro 41.2 39 0.00085 34.8 4.5 140 356-500 235-393 (427)
248 PRK00207 sulfur transfer compl 40.4 42 0.0009 29.1 4.1 39 50-90 1-40 (128)
249 PF01531 Glyco_transf_11: Glyc 39.5 1.5E+02 0.0033 29.7 8.6 64 287-352 189-254 (298)
250 cd01750 GATase1_CobQ Type 1 gl 39.2 98 0.0021 28.8 6.7 68 307-378 3-81 (194)
251 cd01965 Nitrogenase_MoFe_beta_ 38.8 3.3E+02 0.0071 28.9 11.5 111 285-409 132-274 (428)
252 PLN03007 UDP-glucosyltransfera 38.8 37 0.00081 36.7 4.4 42 45-91 1-42 (482)
253 COG1052 LdhA Lactate dehydroge 38.7 1.8E+02 0.0038 29.7 8.9 42 338-379 193-239 (324)
254 PF10649 DUF2478: Protein of u 38.7 42 0.00092 30.3 3.9 34 345-378 93-132 (159)
255 PRK00257 erythronate-4-phospha 38.4 2.1E+02 0.0045 30.0 9.5 77 303-379 115-210 (381)
256 PRK15409 bifunctional glyoxyla 37.5 1.5E+02 0.0032 30.2 8.2 43 337-379 192-239 (323)
257 PRK06849 hypothetical protein; 37.3 2E+02 0.0042 30.0 9.4 33 49-90 4-36 (389)
258 TIGR00853 pts-lac PTS system, 37.0 55 0.0012 26.7 4.1 71 307-378 7-84 (95)
259 KOG0780 Signal recognition par 37.0 3.9E+02 0.0085 28.0 10.7 155 278-436 159-342 (483)
260 PF09949 DUF2183: Uncharacteri 36.8 1E+02 0.0022 25.5 5.6 40 292-331 52-93 (100)
261 cd05565 PTS_IIB_lactose PTS_II 36.7 84 0.0018 25.9 5.1 70 307-377 4-80 (99)
262 cd05564 PTS_IIB_chitobiose_lic 36.5 71 0.0015 26.0 4.7 71 307-378 3-80 (96)
263 COG0111 SerA Phosphoglycerate 36.5 2.2E+02 0.0047 29.1 9.2 89 304-404 142-249 (324)
264 cd05212 NAD_bind_m-THF_DH_Cycl 36.1 2.6E+02 0.0057 24.6 8.5 70 302-373 26-97 (140)
265 cd00466 DHQase_II Dehydroquina 35.6 74 0.0016 28.0 4.8 90 317-406 31-138 (140)
266 PRK06436 glycerate dehydrogena 35.1 2.1E+02 0.0045 28.9 8.8 41 337-377 165-210 (303)
267 cd01971 Nitrogenase_VnfN_like 34.7 5.4E+02 0.012 27.2 12.3 112 284-409 131-261 (427)
268 PF13905 Thioredoxin_8: Thiore 34.4 1.5E+02 0.0032 23.4 6.3 78 274-352 3-84 (95)
269 PF01220 DHquinase_II: Dehydro 33.4 98 0.0021 27.3 5.2 90 317-406 32-139 (140)
270 PLN02696 1-deoxy-D-xylulose-5- 33.1 1.5E+02 0.0032 31.7 7.4 88 285-377 92-181 (454)
271 PF13241 NAD_binding_7: Putati 31.9 78 0.0017 26.0 4.3 39 341-379 56-95 (103)
272 smart00115 CASc Caspase, inter 31.2 74 0.0016 30.9 4.7 44 45-89 3-50 (241)
273 PLN00016 RNA-binding protein; 31.1 73 0.0016 33.1 4.9 38 48-90 51-88 (378)
274 cd06289 PBP1_MalI_like Ligand- 30.9 4.7E+02 0.01 24.8 11.4 62 345-409 55-116 (268)
275 PF02951 GSH-S_N: Prokaryotic 30.9 83 0.0018 26.9 4.3 37 50-90 1-39 (119)
276 PRK12595 bifunctional 3-deoxy- 30.7 6.3E+02 0.014 26.2 13.5 108 286-409 129-252 (360)
277 COG2804 PulE Type II secretory 30.6 1.7E+02 0.0036 31.7 7.3 44 153-197 319-363 (500)
278 TIGR00243 Dxr 1-deoxy-D-xylulo 30.5 1.4E+02 0.003 31.2 6.5 90 283-377 34-125 (389)
279 PRK00048 dihydrodipicolinate r 30.5 1.8E+02 0.0039 28.5 7.3 43 336-378 51-93 (257)
280 PF00551 Formyl_trans_N: Formy 30.4 3.5E+02 0.0076 24.7 8.9 41 152-196 70-110 (181)
281 PF00533 BRCT: BRCA1 C Terminu 30.1 1E+02 0.0022 23.2 4.5 65 303-376 7-72 (78)
282 PF02441 Flavoprotein: Flavopr 29.8 1.1E+02 0.0023 26.4 5.0 35 50-90 1-35 (129)
283 COG1692 Calcineurin-like phosp 29.7 3.1E+02 0.0067 26.7 8.2 79 275-354 2-90 (266)
284 PRK13932 stationary phase surv 29.6 76 0.0017 31.2 4.4 38 48-92 4-41 (257)
285 PRK13304 L-aspartate dehydroge 29.4 2.4E+02 0.0053 27.7 8.1 69 304-378 26-94 (265)
286 PRK10840 transcriptional regul 29.3 4.5E+02 0.0098 24.3 9.8 105 305-409 4-127 (216)
287 cd06267 PBP1_LacI_sugar_bindin 29.3 4.8E+02 0.01 24.4 11.1 59 345-408 55-114 (264)
288 PF06506 PrpR_N: Propionate ca 29.1 1.9E+02 0.004 26.4 6.7 16 360-375 134-149 (176)
289 cd05312 NAD_bind_1_malic_enz N 29.1 3E+02 0.0065 27.4 8.4 41 335-375 93-138 (279)
290 cd00762 NAD_bind_malic_enz NAD 28.9 2.3E+02 0.0049 27.8 7.4 40 336-375 95-139 (254)
291 COG0757 AroQ 3-dehydroquinate 28.7 2.1E+02 0.0045 25.2 6.2 90 317-406 32-139 (146)
292 COG0299 PurN Folate-dependent 28.7 2.7E+02 0.0058 26.1 7.4 42 152-197 70-111 (200)
293 PF04430 DUF498: Protein of un 28.5 90 0.0019 26.1 4.1 42 292-333 41-86 (110)
294 PRK06027 purU formyltetrahydro 28.3 2.4E+02 0.0053 28.1 7.8 42 152-197 156-197 (286)
295 PRK08887 nicotinic acid mononu 27.5 3.5E+02 0.0077 24.6 8.2 67 290-371 84-151 (174)
296 TIGR00715 precor6x_red precorr 27.4 3.6E+02 0.0077 26.5 8.7 96 50-192 1-98 (256)
297 PRK13010 purU formyltetrahydro 27.3 2.7E+02 0.0058 27.9 7.9 42 152-197 160-201 (289)
298 COG2805 PilT Tfp pilus assembl 27.0 3.2E+02 0.007 27.7 8.1 41 45-90 120-160 (353)
299 PRK06249 2-dehydropantoate 2-r 26.8 62 0.0014 32.7 3.4 36 45-90 1-36 (313)
300 cd05311 NAD_bind_2_malic_enz N 26.8 2.9E+02 0.0063 26.4 7.9 36 338-374 90-125 (226)
301 PRK11790 D-3-phosphoglycerate 26.8 3E+02 0.0065 29.1 8.6 43 337-379 195-242 (409)
302 PRK05647 purN phosphoribosylgl 26.6 2.6E+02 0.0056 26.3 7.3 42 152-197 71-112 (200)
303 cd00316 Oxidoreductase_nitroge 26.5 2.9E+02 0.0064 28.7 8.6 109 284-407 126-250 (399)
304 PRK06718 precorrin-2 dehydroge 26.4 4.8E+02 0.011 24.4 9.2 107 295-407 26-141 (202)
305 PF11238 DUF3039: Protein of u 26.2 51 0.0011 24.1 1.8 16 360-375 15-30 (58)
306 PRK07574 formate dehydrogenase 26.2 3.8E+02 0.0083 28.1 9.1 43 336-378 239-286 (385)
307 PF02882 THF_DHG_CYH_C: Tetrah 26.0 4E+02 0.0086 24.1 8.1 63 292-354 24-88 (160)
308 PRK12480 D-lactate dehydrogena 25.7 2.5E+02 0.0053 28.7 7.5 43 337-379 190-237 (330)
309 cd00032 CASc Caspase, interleu 25.5 98 0.0021 30.0 4.4 44 45-89 4-52 (243)
310 TIGR01658 EYA-cons_domain eyes 25.4 1.6E+02 0.0034 28.7 5.4 50 292-344 216-267 (274)
311 PRK13011 formyltetrahydrofolat 25.2 3.4E+02 0.0074 27.1 8.2 41 153-197 157-197 (286)
312 COG2910 Putative NADH-flavin r 25.2 1.1E+02 0.0024 28.4 4.3 32 50-90 1-32 (211)
313 PRK15469 ghrA bifunctional gly 25.0 2.2E+02 0.0048 28.8 7.0 42 336-377 181-227 (312)
314 COG3737 Uncharacterized conser 25.0 1.4E+02 0.0031 25.4 4.5 48 286-333 51-102 (127)
315 cd01974 Nitrogenase_MoFe_beta 24.5 7.8E+02 0.017 26.1 11.4 115 284-409 135-278 (435)
316 cd06167 LabA_like LabA_like pr 24.3 3.5E+02 0.0075 23.5 7.5 66 283-349 78-146 (149)
317 PF00852 Glyco_transf_10: Glyc 23.9 3.7E+02 0.0081 27.6 8.6 72 338-411 220-301 (349)
318 PF14336 DUF4392: Domain of un 23.7 1.3E+02 0.0029 30.1 5.0 41 48-90 39-84 (291)
319 TIGR01283 nifE nitrogenase mol 23.6 4.2E+02 0.0092 28.4 9.2 33 48-90 325-357 (456)
320 COG2120 Uncharacterized protei 23.5 5.3E+02 0.012 24.8 9.1 39 49-92 10-48 (237)
321 PRK08305 spoVFB dipicolinate s 23.5 1E+02 0.0022 29.0 3.8 37 48-90 4-41 (196)
322 PLN02306 hydroxypyruvate reduc 23.4 4.5E+02 0.0098 27.5 9.1 42 337-378 228-274 (386)
323 cd01972 Nitrogenase_VnfE_like 23.3 3.7E+02 0.0081 28.5 8.6 110 284-407 136-264 (426)
324 PRK08306 dipicolinate synthase 23.2 1.9E+02 0.0041 29.1 6.0 22 67-89 11-32 (296)
325 COG3563 KpsC Capsule polysacch 23.1 4.5E+02 0.0097 28.3 8.6 79 292-378 169-253 (671)
326 PF13380 CoA_binding_2: CoA bi 23.1 1.5E+02 0.0032 25.1 4.5 35 50-90 1-35 (116)
327 TIGR01283 nifE nitrogenase mol 23.0 3.3E+02 0.0071 29.2 8.2 111 284-408 167-295 (456)
328 PRK13243 glyoxylate reductase; 23.0 3.2E+02 0.007 27.9 7.8 42 337-378 196-242 (333)
329 PRK01372 ddl D-alanine--D-alan 23.0 1.2E+02 0.0026 30.2 4.7 40 49-90 4-44 (304)
330 PRK04531 acetylglutamate kinas 22.9 4.2E+02 0.0092 27.9 8.8 120 273-408 37-163 (398)
331 cd05125 Mth938_2P1-like Mth938 22.9 2.2E+02 0.0049 24.1 5.5 43 292-334 42-88 (114)
332 cd01539 PBP1_GGBP Periplasmic 22.9 5.1E+02 0.011 25.6 9.2 34 345-378 57-91 (303)
333 PF01936 NYN: NYN domain; Int 22.6 2.2E+02 0.0048 24.5 5.8 67 284-351 75-144 (146)
334 PF01993 MTD: methylene-5,6,7, 22.6 40 0.00087 32.3 1.0 99 276-392 6-113 (276)
335 PRK12311 rpsB 30S ribosomal pr 22.5 8.4E+02 0.018 24.9 12.9 25 359-383 165-191 (326)
336 COG1879 RbsB ABC-type sugar tr 22.4 5.5E+02 0.012 25.6 9.5 64 344-409 90-158 (322)
337 PF03435 Saccharop_dh: Sacchar 22.2 4.6E+02 0.0099 27.2 9.0 75 300-377 18-99 (386)
338 PRK06719 precorrin-2 dehydroge 21.8 1.3E+02 0.0028 27.1 4.1 33 48-90 12-44 (157)
339 PRK14189 bifunctional 5,10-met 21.3 4.9E+02 0.011 26.0 8.4 81 291-373 145-227 (285)
340 TIGR01279 DPOR_bchN light-inde 21.2 7.1E+02 0.015 26.2 10.2 33 48-90 273-305 (407)
341 PRK00676 hemA glutamyl-tRNA re 21.2 9E+02 0.02 24.8 10.4 132 303-438 173-320 (338)
342 PRK14478 nitrogenase molybdenu 21.1 5.4E+02 0.012 27.8 9.4 120 48-218 323-443 (475)
343 cd06312 PBP1_ABC_sugar_binding 20.9 7.4E+02 0.016 23.6 9.9 34 345-378 57-91 (271)
344 COG3473 Maleate cis-trans isom 20.9 1.6E+02 0.0034 27.9 4.4 33 345-377 179-212 (238)
345 PLN02695 GDP-D-mannose-3',5'-e 20.8 1.3E+02 0.0029 31.1 4.6 38 44-90 16-53 (370)
346 COG2894 MinD Septum formation 20.7 5.8E+02 0.013 24.7 8.1 35 51-90 3-39 (272)
347 TIGR01327 PGDH D-3-phosphoglyc 20.7 4.7E+02 0.01 28.7 8.9 43 337-379 185-232 (525)
348 PF01012 ETF: Electron transfe 20.6 3.3E+02 0.0072 24.2 6.6 88 288-375 17-120 (164)
349 PRK08572 rps17p 30S ribosomal 20.5 1.1E+02 0.0024 25.7 3.0 43 500-542 2-48 (108)
350 cd06284 PBP1_LacI_like_6 Ligan 20.5 7.2E+02 0.016 23.4 10.6 60 345-409 55-114 (267)
351 cd01544 PBP1_GalR Ligand-bindi 20.3 7.6E+02 0.016 23.6 10.6 64 342-410 49-112 (270)
352 PRK10017 colanic acid biosynth 20.3 4.9E+02 0.011 27.7 8.7 103 276-378 3-157 (426)
353 COG1519 KdtA 3-deoxy-D-manno-o 20.2 7.7E+02 0.017 26.1 9.7 84 290-377 64-154 (419)
354 PRK02910 light-independent pro 20.1 4.7E+02 0.01 28.6 8.8 89 305-408 159-260 (519)
355 cd01974 Nitrogenase_MoFe_beta 20.1 8.7E+02 0.019 25.8 10.7 33 48-90 302-334 (435)
No 1
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=4.3e-87 Score=701.88 Aligned_cols=491 Identities=53% Similarity=0.938 Sum_probs=446.5
Q ss_pred cceeeccCCcCCCCcCCCChhhhchhhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCcccccc
Q 008544 20 AAVEFSSQSSYPKGFLHKNPEILSLMDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ 99 (562)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~ 99 (562)
|+|+|||||+|+||+||+..+.+ .| .++++|+|||++.+|||||++++++.+|.||++.|+++||++.||++..||+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~~~~~VtlviPWl~~~dq~~ 372 (794)
T PLN02501 295 ASVLQSTGHCYDGGFWTDSSKHE-LS-DGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKSAKQNVTLLVPWLCKSDQEL 372 (794)
T ss_pred hhhhhccCccccCCcccCccccc-cc-cCCCeEEEEEcccCcccccccccHHHHHHHhcccCCceEEEEEecCCcccccc
Confidence 77999999999999999999885 44 44499999999999999999999999999999998899999999999999999
Q ss_pred ccCCCceeCCchhhHHHHHHHhhhccCCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhch
Q 008544 100 VYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHG 179 (562)
Q Consensus 100 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~ 179 (562)
+||++++|.+|++|+.|++.|++.++.+.+.+++.+||++|...+++|+|++++.+.+.+++|||||+++|++++|++|+
T Consensus 373 vy~~~~~F~~p~eQe~~ir~wl~~r~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~G 452 (794)
T PLN02501 373 VYPNNLTFSSPEEQESYIRNWLEERIGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHG 452 (794)
T ss_pred ccCCCcccCCHHHHHHHHHHHHHHhcCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccccccCCCCcCcch
Q 008544 180 KRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGE 259 (562)
Q Consensus 180 ~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~ 259 (562)
.+|+++++|+|.++||+|..|..+++.+.+...+.+.+++++.+++||.|+++|..+++++...+.+++|||+++|.+..
T Consensus 453 lr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~ 532 (794)
T PLN02501 453 KRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGE 532 (794)
T ss_pred HHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHHhcccceeecccccccccCCcc
Confidence 99999999999999999999999998888888888899999998889999999999998887777778899999999876
Q ss_pred hhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCCh
Q 008544 260 KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA 339 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~ 339 (562)
+.......+...+.+.++|+||+.+.||++.|++|+..+..+.|+++|+|+|+|++.+++++.++++++.+.|+++.++.
T Consensus 533 r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~ 612 (794)
T PLN02501 533 KVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHA 612 (794)
T ss_pred hhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCH
Confidence 65444455655555678999999999999999999999988888999999999999999999999999888778888888
Q ss_pred HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHHh
Q 008544 340 DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTH 419 (562)
Q Consensus 340 ~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar~ 419 (562)
.++|+.+|+||+||..|+||++++||||||+|||++++++.+++.++.+|++++|+++|+++|.+++++++.+....++.
T Consensus 613 ~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~ 692 (794)
T PLN02501 613 DDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRY 692 (794)
T ss_pred HHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHh
Confidence 89999999999999999999999999999999999999997778889999999999999999999999988655555567
Q ss_pred cCCHHHHHHHHHHHHHhcCccccc------CCCCCCccccccccchHHHHHHHHHHhhhhhcccchhhhhhcCCCCCCCC
Q 008544 420 QLSWESATERFLQVAELVGDVVTK------RSKSPSRHLESESLNSKRIIEDAFGYLHYVASGFETSRRALGAIPGSLQP 493 (562)
Q Consensus 420 ~~sw~~~~~~~~~~y~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~l~~~h~~~~g~~~~r~~~ga~~~~~~~ 493 (562)
.+||+++++++++.-+..+..+.. ..+..........+++++.+|+++|+.|++++|.|.+|+++||+|+|+++
T Consensus 693 ~~SWeAaadrLle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~ 772 (794)
T PLN02501 693 NLSWEAATQRFMEYSDLDKVLNNGDDAKLSKSGGKSITKSVSMPNLSEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDY 772 (794)
T ss_pred hCCHHHHHHHHHHhhccccccccccccccccccccchhhhccCCcHHHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCc
Confidence 999999999999999887655441 11222333444448899999999999999999999999999999999999
Q ss_pred ChHHHHHhCCCCcccCccc
Q 008544 494 DEQLCKELGLVTELGKGHC 512 (562)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~ 512 (562)
|+|+|++|||.||++++..
T Consensus 773 ~~~~~~~~~~~~~~~~~~~ 791 (794)
T PLN02501 773 DKQHCKDLHLLPPHVENPI 791 (794)
T ss_pred CHHHHHhcCCCCCCCCCCC
Confidence 9999999999999998754
No 2
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=3.1e-74 Score=600.53 Aligned_cols=458 Identities=76% Similarity=1.224 Sum_probs=411.0
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+|||+|||++|+||++|+++++..++.+|+++|.|+|+|++||+...++..+||++++|.+++.++.+++.|...++...
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r~ 83 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISFL 83 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEEe
Confidence 49999999999999999999999999999999735999999999877788889999999999999999999987777788
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchH
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
+.+++++||.++....+.+.+..++.+.|++++|||||+++|++++|+.++.+|.+++.+++.++||++..|..+++.+.
T Consensus 84 ~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g~ 163 (462)
T PLN02846 84 PKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNGR 163 (462)
T ss_pred cccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccch
Confidence 99999999998777778888889999999999999999999999999877888998888999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCH
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~ 288 (562)
....+.+.+.+++.+.+||.++++|...+++....+.+++|||+.+|.+..+.......+...+.++++|+||+.++||+
T Consensus 164 ~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~ 243 (462)
T PLN02846 164 VKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGY 243 (462)
T ss_pred HHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCH
Confidence 67778888888888888999999999888877776677789999998876553221112212224579999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 368 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 368 (562)
+.+++++.++.+..|+++|+|+|+|++++++++.+++++++++++.+..+.+++|+.+|+||+||..|+||++++|||||
T Consensus 244 ~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~ 323 (462)
T PLN02846 244 KELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAM 323 (462)
T ss_pred HHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHc
Confidence 99999999998888999999999999999999999999988888888888889999999999999999999999999999
Q ss_pred CCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHHhcCcccccCCCCC
Q 008544 369 GKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDVVTKRSKSP 448 (562)
Q Consensus 369 G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y~~~~~~~~~~~~~~ 448 (562)
|+|||+++.++.+++.++.+|+.++|.++|++++.++++++..+++.++++.|||+.+++++++.|+.....+..+.+..
T Consensus 324 G~PVVa~~~~~~~~v~~~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~~~~~ 403 (462)
T PLN02846 324 GKIVVCANHPSNEFFKQFPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKPNKSS 403 (462)
T ss_pred CCcEEEecCCCcceeecCCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCcccccccc
Confidence 99999999999999999999999999999999999999987666777777999999999999999999998776665555
Q ss_pred CccccccccchHHHHHHHHHHhhhhhcccchhhhhhcCCCCCCCCChHHHHHhCCCCc
Q 008544 449 SRHLESESLNSKRIIEDAFGYLHYVASGFETSRRALGAIPGSLQPDEQLCKELGLVTE 506 (562)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~l~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~ 506 (562)
.+...+.++++.+.+|+++|++|++++|.|.+|+++||+|+|+++|+|+|++|||.+|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (462)
T PLN02846 404 LKNFMSTSPNLKKNMEDASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQ 461 (462)
T ss_pred ccchhccCccHhhhhhhHHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCC
Confidence 6666777789999999999999999999999999999999999999999999999887
No 3
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=8e-36 Score=320.46 Aligned_cols=358 Identities=17% Similarity=0.157 Sum_probs=250.8
Q ss_pred ccCCeEEEEeccc-CCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhcc
Q 008544 47 RKQQHIAIFTTAS-LPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 47 ~~~~rI~ivt~~~-~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
.++|||+++++.+ +|..+|++.+...++++|.++| |+|+++++.... .. .+ .++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G-~eV~vlt~~~~~--~~-~~-~g~~v------------------ 112 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG-DEVLVVTTDEGV--PQ-EF-HGAKV------------------ 112 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC-CeEEEEecCCCC--Cc-cc-cCcee------------------
Confidence 5669999998744 4567898999999999999998 999999873210 00 00 01000
Q ss_pred CCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh
Q 008544 126 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE 204 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~ 204 (562)
.....+.+..+.. . .........+.+.+++.+||+||++++....+. +..+++..+ |+|.++|+....+....
T Consensus 113 ~~~~~~~~~~~~~-~---~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~--~~~~ak~~~ip~V~~~h~~~~~~~~~~ 186 (465)
T PLN02871 113 IGSWSFPCPFYQK-V---PLSLALSPRIISEVARFKPDLIHASSPGIMVFG--ALFYAKLLCVPLVMSYHTHVPVYIPRY 186 (465)
T ss_pred eccCCcCCccCCC-c---eeeccCCHHHHHHHHhCCCCEEEECCCchhHHH--HHHHHHHhCCCEEEEEecCchhhhhcc
Confidence 0000011111110 0 000000124677788899999999987554332 223344444 89999998765554332
Q ss_pred hchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCccc-cccccCCCCcCcchhh-hHHhhc-CCCCCcc
Q 008544 205 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIVC-NVHGVNPKFLEIGEKK-MEQQQN-GNKAFTK 274 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~~-~v~GVd~~~~~~~~~~-~~~~~~-~~~~~~~ 274 (562)
....+...+. .+.+++.+. +|.++++|+..++.. .+.+. ..+|||.+.|.+.... ..+... +..++.+
T Consensus 187 ~~~~~~~~~~-~~~r~~~~~-ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 187 TFSWLVKPMW-DIIRFLHRA-ADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKP 264 (465)
T ss_pred cchhhHHHHH-HHHHHHHhh-CCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCe
Confidence 2222222221 223344443 899999998877632 22233 3369998877653322 122222 2234578
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEEEc
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNP 352 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v~p 352 (562)
+|+|+|++.++||++.+++++++ .++++|+|+|+|+..++++++++.. ++.|.|.. +++.++|+.+|++|+|
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~----~~~~~l~ivG~G~~~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~aDv~V~p 338 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMER----LPGARLAFVGDGPYREELEKMFAGT--PTVFTGMLQGDELSQAYASGDVFVMP 338 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHh----CCCcEEEEEeCChHHHHHHHHhccC--CeEEeccCCHHHHHHHHHHCCEEEEC
Confidence 89999999999999999998854 4689999999999888898887643 46666654 5667999999999999
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC-cccccc---CCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH---hcC
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS-NDFFKQ---FPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQL 421 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~---~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---~~~ 421 (562)
|..|+||++++||||||+|||+++.++ .|++.+ +.+|++++ |+++++++|.++++|++. +|+++++ ++|
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~f 418 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKW 418 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998 899988 99999974 999999999999998875 7888777 789
Q ss_pred CHHHHHHHHHH-HHHhcCccc
Q 008544 422 SWESATERFLQ-VAELVGDVV 441 (562)
Q Consensus 422 sw~~~~~~~~~-~y~~~~~~~ 441 (562)
+|+.+++++++ .|+.+....
T Consensus 419 sw~~~a~~l~~~~Y~~~~~~~ 439 (465)
T PLN02871 419 DWRAATRKLRNEQYSAAIWFW 439 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 798887443
No 4
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=8.3e-36 Score=314.35 Aligned_cols=350 Identities=15% Similarity=0.106 Sum_probs=244.8
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.|.|..||.+..+..+++.|.++| |+|+|+++............+++.+ ...+.
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~i~v------------------~~~p~ 61 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG-HKVVVITHAYGNRVGIRYLTNGLKV------------------YYLPF 61 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC-CeeEEEeccCCcCCCcccccCceeE------------------EEecc
Confidence 6999999999999999999999999999998 9999999732100000000011110 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
.... ..... ......+..+.+.+++.+|||||+|++...... .+..+.+..+ |+|.+.|+.+.... .
T Consensus 62 ~~~~-~~~~~---~~~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~~~~~~~~v~t~h~~~~~~~-------~ 129 (398)
T cd03796 62 VVFY-NQSTL---PTFFGTFPLLRNILIRERITIVHGHQAFSALAH-EALLHARTMGLKTVFTDHSLFGFAD-------A 129 (398)
T ss_pred eecc-CCccc---cchhhhHHHHHHHHHhcCCCEEEECCCCchHHH-HHHHHhhhcCCcEEEEecccccccc-------h
Confidence 0000 00000 000112334677777889999999987544211 1222344444 88999997542110 0
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhcc-------CCCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
.......+.++..+ .+|.++++|+..++. ..+.+ ...+|+|...|.+.... .+++.++++|+|+
T Consensus 130 ~~~~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~-------~~~~~~~i~~~gr 201 (398)
T cd03796 130 SSIHTNKLLRFSLA-DVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK-------RDNDKITIVVISR 201 (398)
T ss_pred hhHHhhHHHHHhhc-cCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-------CCCCceEEEEEec
Confidence 01112222233333 379999999877652 12222 33468988766543221 2344688999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCee--EEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVV--RVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~--~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
+.++||++.+++++..+.++.|+++|+++|+|+..+.+++.++++++.. .+.+.. +++.++|+.+|++++||..|+
T Consensus 202 l~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~ 281 (398)
T cd03796 202 LVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEA 281 (398)
T ss_pred cchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhc
Confidence 9999999999999999988889999999999998889999999988764 445543 456699999999999999999
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERF 430 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~ 430 (562)
||++++||||||+|||+++.++ .|++.++..++..+|+++++++|.+++++... .+.++++ ++|||+.+++++
T Consensus 282 ~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~ 361 (398)
T cd03796 282 FCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRT 361 (398)
T ss_pred cCHHHHHHHHcCCCEEECCCCCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHH
Confidence 9999999999999999999998 89998776555556999999999999997654 3444444 889999999999
Q ss_pred HHHHHhcCc
Q 008544 431 LQVAELVGD 439 (562)
Q Consensus 431 ~~~y~~~~~ 439 (562)
+++|+....
T Consensus 362 ~~~y~~l~~ 370 (398)
T cd03796 362 EKVYDRILQ 370 (398)
T ss_pred HHHHHHHhc
Confidence 999998763
No 5
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=304.60 Aligned_cols=373 Identities=14% Similarity=0.044 Sum_probs=247.1
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHh-hhccCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWL-EDRTGFT 128 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~-~~~~~~~ 128 (562)
|||++++..|+|..+|++.++..++++|.++| |+|+|+|+... ||.......... ..+..... ..++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G-~~V~vit~~~~-------~~~~~~~~~~~~-~~~~~~~~~~i~v~r~ 71 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG-HEVRVITAPPY-------YPQWRVGEGYSA-WRYRRESEGGVTVWRC 71 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC-CeEEEEecCCC-------CCCCCCCccccc-ccceeeecCCeEEEEc
Confidence 68999999999999999999999999999998 99999997311 111000000000 00000000 0000000
Q ss_pred CCcccccccccchhccch-hhhH---HhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhh
Q 008544 129 STFDTRFYPGKFAADKKS-ILAV---GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR 203 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~-~~~~---~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~ 203 (562)
+.. ....+......... .+.+ ..+.+.++ .+||+||++++...... .+..++++.+ |++.++|+.+++....
T Consensus 72 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~p~~~~~~-~~~~~~~~~~~~~v~~~~d~~~~~~~~ 148 (412)
T PRK10307 72 PLY-VPKQPSGLKRLLHLGSFALSSFFPLLAQRR-WRPDRVIGVVPTLFCAP-GARLLARLSGARTWLHIQDYEVDAAFG 148 (412)
T ss_pred ccc-CCCCccHHHHHHHHHHHHHHHHHHHhhccC-CCCCEEEEeCCcHHHHH-HHHHHHHhhCCCEEEEeccCCHHHHHH
Confidence 000 00000000000000 0011 11222222 68999999987655322 1233444444 7888888765443211
Q ss_pred hh--chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCcc-ccccccCCCCcCcchh---hhHHhhcCCCC
Q 008544 204 EK--NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIV-CNVHGVNPKFLEIGEK---KMEQQQNGNKA 271 (562)
Q Consensus 204 ~~--~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~-~~v~GVd~~~~~~~~~---~~~~~~~~~~~ 271 (562)
.+ .+.....+...+.+++.+. +|.++++|+..++.. .+.+ +..||+|.+.|.+... ...+...+.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~ 227 (412)
T PRK10307 149 LGLLKGGKVARLATAFERSLLRR-FDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPD 227 (412)
T ss_pred hCCccCcHHHHHHHHHHHHHHhh-CCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCC
Confidence 11 1111122333344444443 899999998887732 1223 2337999876654322 12344566667
Q ss_pred CccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCCC--CChHHHHhhcCE
Q 008544 272 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGR--DHADPIFHDYKV 348 (562)
Q Consensus 272 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~~--~~~~~l~~~adv 348 (562)
+.++++|+|++.++||++.+++|++.+. +.++++|+|+|+|+..+++++.++.+++. +.++|.. ++..++|+.||+
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~~~l~-~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi 306 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAARRLR-DRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADC 306 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHHHHhc-cCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCE
Confidence 7789999999999999999999999885 45789999999999999999999988775 4445543 355589999999
Q ss_pred EEEccCCCC----CcHHHHHHHHcCCcEEeeCCCC---ccccccCCceEee--CCHHHHHHHHHHHHhCCCC--CccHHH
Q 008544 349 FLNPSTTDV----VCTATAEALAMGKIVVCANHPS---NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQ 417 (562)
Q Consensus 349 ~v~pS~~E~----~~~~~lEAma~G~PVI~t~~~~---~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~a 417 (562)
+++||..|+ +|.+++||||||+|||+|+.++ .+++. .+|+++ +|+++++++|.++++|+.. .|++++
T Consensus 307 ~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a 384 (412)
T PRK10307 307 HLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVA 384 (412)
T ss_pred eEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999888 6888999999999999998875 46666 588887 4999999999999998875 888887
Q ss_pred H----hcCCHHHHHHHHHHHHHhcC
Q 008544 418 T----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 418 r----~~~sw~~~~~~~~~~y~~~~ 438 (562)
+ ++|||+.+++++.++|+...
T Consensus 385 ~~~~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 385 REYAERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 7 68999999999999999766
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=3.1e-34 Score=307.77 Aligned_cols=367 Identities=17% Similarity=0.138 Sum_probs=241.4
Q ss_pred CeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCcccccc-----c-------------cCCCceeCC
Q 008544 50 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ-----V-------------YPGNITFAS 109 (562)
Q Consensus 50 ~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~-----~-------------~p~~i~~~~ 109 (562)
|||++|+..+.|. .||.+..+..|+++|+++| |+|+|++|++....... + ..+++++.-
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G-~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG-HDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC-CcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 6899999888888 7899999999999999998 99999999764321110 0 001111110
Q ss_pred chhhHHHHHHHhhhccCCCCCcccccccccchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHHHHhh--
Q 008544 110 PKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAK-- 185 (562)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~~~~~-- 185 (562)
.+. ..+ + ..-.+..++. ...+..+-.....++++ ..+|||||+|.+... +. +..++..
T Consensus 80 v~~-~~~----------~-~~~~~y~~~d---~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~-~~--~~~l~~~~~ 141 (466)
T PRK00654 80 IDA-PHL----------F-DRPSGYGYPD---NGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTG-LI--PALLKEKYW 141 (466)
T ss_pred EeC-HHH----------c-CCCCCCCCcC---hHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHH-HH--HHHHHHhhh
Confidence 000 000 0 0000000110 00000000011222222 358999999986543 33 2223322
Q ss_pred ----cCCEEEEEcCCcHHH------Hhhhhch--HH-HHHHH----HHHHHHHHHHhccEEEEcChhhhccC--------
Q 008544 186 ----FRFVVGIVHTNYLEY------VKREKND--RL-QAFLL----EFVNSWLARVHCHKVIRLSAATQEYP-------- 240 (562)
Q Consensus 186 ----~~~vi~~~h~~~~~~------~~~~~~~--~~-~~~~~----~~~~~~~~~~~ad~vi~~S~~~~~~~-------- 240 (562)
..|+|.++|+....- ....+.. .+ ...+. ..+.+...+ +||.|+++|+..++..
T Consensus 142 ~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vitvS~~~~~ei~~~~~~~g 220 (466)
T PRK00654 142 RGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLY-YADRVTTVSPTYAREITTPEFGYG 220 (466)
T ss_pred ccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHH-hcCcCeeeCHHHHHHhccccCCcC
Confidence 138999999752110 0000000 00 00000 000111122 4899999998765521
Q ss_pred --------C-CccccccccCCCCcCcchh-------------------hhHHhhcCCCC-CccEEEEEeeccccCCHHHH
Q 008544 241 --------N-SIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA-FTKGAYYIGRMVWSKGYEEL 291 (562)
Q Consensus 241 --------~-~~~~~v~GVd~~~~~~~~~-------------------~~~~~~~~~~~-~~~~il~vGr~~~~Kg~~~l 291 (562)
. +.....||||.+.|.|... ...++..++++ +.++++|+||+.++||++.+
T Consensus 221 l~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~l 300 (466)
T PRK00654 221 LEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLV 300 (466)
T ss_pred hHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHH
Confidence 1 2223457999988766421 12244456653 57899999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCCCCcHHHHHHHH
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E~~~~~~lEAma 367 (562)
++|++++.++ +++|+|+|+|+. .+++++++++++.++.++.++++. ..+|+.||++|+||.+|+||++++|||+
T Consensus 301 i~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma 378 (466)
T PRK00654 301 LEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALR 378 (466)
T ss_pred HHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHH
Confidence 9999998764 799999999864 478888888888776666555432 3789999999999999999999999999
Q ss_pred cCCcEEeeCCCC-ccccccC------CceEeeC--CHHHHHHHHHHHHh---CCCC--CccHHHH-hcCCHHHHHHHHHH
Q 008544 368 MGKIVVCANHPS-NDFFKQF------PNCRTYD--GRNGFVEATLKALA---EEPA--QPTDAQT-HQLSWESATERFLQ 432 (562)
Q Consensus 368 ~G~PVI~t~~~~-~e~v~~~------~~g~~~~--d~~~la~~i~~ll~---~~~~--~l~~~ar-~~~sw~~~~~~~~~ 432 (562)
||+|+|+++.|| .|.+.++ .+|++++ |+++++++|.++++ +++. +|++++. +.|||+.+++++.+
T Consensus 379 ~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~ 458 (466)
T PRK00654 379 YGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEEYLE 458 (466)
T ss_pred CCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHHHHH
Confidence 999999999998 8999887 8999984 99999999999887 3333 6666666 88999999999999
Q ss_pred HHHhcC
Q 008544 433 VAELVG 438 (562)
Q Consensus 433 ~y~~~~ 438 (562)
+|+...
T Consensus 459 lY~~~~ 464 (466)
T PRK00654 459 LYRRLL 464 (466)
T ss_pred HHHHHh
Confidence 998754
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=6.7e-34 Score=300.56 Aligned_cols=363 Identities=16% Similarity=0.104 Sum_probs=244.0
Q ss_pred EEEEecccCCCc-------ccccccHHHHHHHHHHcCCCeEEEEeecCCcccccccc-CCCceeCCchhhHHHHHHHhhh
Q 008544 52 IAIFTTASLPWL-------TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVY-PGNITFASPKEQEAYVRWWLED 123 (562)
Q Consensus 52 I~ivt~~~~P~~-------~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~-p~~i~~~~~~~~~~~~~~~~~~ 123 (562)
|+++++..+|+. ||++.++.+++++|.++| |+|++++++.......... -+++++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~v~~-------------- 65 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRG-IEVDIFTRATRPSQPPVVEVAPGVRVRN-------------- 65 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCC-CEEEEEecccCCCCCCccccCCCcEEEE--------------
Confidence 678888888876 899999999999999998 9999999843211110000 01111110
Q ss_pred ccCCCCCcccccccc-cchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHH
Q 008544 124 RTGFTSTFDTRFYPG-KFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLE 199 (562)
Q Consensus 124 ~~~~~~~~~i~~y~~-r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~ 199 (562)
... ........ ++.... ..+....+..+++ ..+||+||+|..... +. +..+.+..+ |.|.++|+.+..
T Consensus 66 -~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Diih~h~~~~~-~~--~~~~~~~~~~p~v~t~h~~~~~ 137 (405)
T TIGR03449 66 -VVA---GPYEGLDKEDLPTQL-CAFTGGVLRAEARHEPGYYDLIHSHYWLSG-QV--GWLLRDRWGVPLVHTAHTLAAV 137 (405)
T ss_pred -ecC---CCcccCCHHHHHHHH-HHHHHHHHHHHhhccCCCCCeEEechHHHH-HH--HHHHHHhcCCCEEEeccchHHH
Confidence 000 00000000 000000 0000111223333 347999999984432 22 222334344 899999975422
Q ss_pred HHhhhhc-hHHHHHHHHHHHHHHHHHhccEEEEcChhhhcc-------CCCcc-ccccccCCCCcCcchhhhHHhhcCCC
Q 008544 200 YVKREKN-DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNK 270 (562)
Q Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~ 270 (562)
....... ........+...+.+.+ .+|.++++|+..++. ..+.+ ...+|+|.+.+.+......+...+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~e~~~~~-~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~ 216 (405)
T TIGR03449 138 KNAALADGDTPEPEARRIGEQQLVD-NADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLP 216 (405)
T ss_pred HHHhccCCCCCchHHHHHHHHHHHH-hcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCC
Confidence 1111000 00001122222233333 379999999875541 11223 33479998777655444445556666
Q ss_pred CCccEEEEEeeccccCCHHHHHHHHHHHHHhcCC--cEEEEEeC----C-CCHHHHHHHHHhcCCe--eEEeCCC--CCh
Q 008544 271 AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG--LEMDLYGN----G-EDFDQIQRAAKKLKLV--VRVYPGR--DHA 339 (562)
Q Consensus 271 ~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~--~~l~ivG~----g-~~~~~l~~~~~~l~l~--~~~~~~~--~~~ 339 (562)
++.++++|+|++.+.||++.++++++.+.++.|+ ++|+++|. | +..+++++.++++++. +.+.+.. ++.
T Consensus 217 ~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~ 296 (405)
T TIGR03449 217 LDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEEL 296 (405)
T ss_pred CCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHH
Confidence 6788999999999999999999999999887776 99999996 3 3457888888888875 4444443 445
Q ss_pred HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--Ccc
Q 008544 340 DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPT 414 (562)
Q Consensus 340 ~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~ 414 (562)
.++|+.+|++++||..|+||++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. +|+
T Consensus 297 ~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~ 376 (405)
T TIGR03449 297 VHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMG 376 (405)
T ss_pred HHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHH
Confidence 5899999999999999999999999999999999999998 99999999999985 999999999999998764 777
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHhcC
Q 008544 415 DAQT---HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 415 ~~ar---~~~sw~~~~~~~~~~y~~~~ 438 (562)
++++ ++|+|+.+++++.++|....
T Consensus 377 ~~~~~~~~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 377 AAAVEHAAGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 7666 68999999999999998654
No 8
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=8.3e-34 Score=295.69 Aligned_cols=350 Identities=17% Similarity=0.171 Sum_probs=245.7
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||++++. |..||++.....++++|.++| |+|++++..... ......+ ++.+.. .+...
T Consensus 1 mki~~~~~---p~~gG~~~~~~~la~~L~~~G-~~v~v~~~~~~~-~~~~~~~-~~~~~~-------------~~~~~-- 59 (371)
T cd04962 1 MKIGIVCY---PTYGGSGVVATELGKALARRG-HEVHFITSSRPF-RLDEYSP-NIFFHE-------------VEVPQ-- 59 (371)
T ss_pred CceeEEEE---eCCCCccchHHHHHHHHHhcC-CceEEEecCCCc-chhhhcc-CeEEEE-------------ecccc--
Confidence 58999973 778999999999999999998 999999872110 0000000 111000 00000
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhc-hHHHHhh-cCCEEEEEcCCcHHHHhhhhch
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHH-GKRWKAK-FRFVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~-~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~ 207 (562)
......+. ........+.+.+++.+||+||+|.+....+... ...+..+ ..|++.++|...........
T Consensus 60 -~~~~~~~~------~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~-- 130 (371)
T cd04962 60 -YPLFQYPP------YDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQDP-- 130 (371)
T ss_pred -cchhhcch------hHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccccc--
Confidence 00000000 0111234577788889999999987543211111 1111111 23889899965322111100
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEe
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 280 (562)
....+.+...+ .+|.++++|+..++.. .+.+ ...+|++...+.+..........+.+++.++++|+|
T Consensus 131 -----~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 204 (371)
T cd04962 131 -----SFQPATRFSIE-KSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHIS 204 (371)
T ss_pred -----cchHHHHHHHh-hCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEec
Confidence 11112222223 3799999998877631 2222 333688876665444333344556666788899999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCC
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~ 358 (562)
++.+.||++.+++++..+.++ ++++|+++|.|++.+.+++.++++++. +.+++..+++.++|+.+|++|+||..|++
T Consensus 205 ~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~ 283 (371)
T cd04962 205 NFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESF 283 (371)
T ss_pred ccccccCHHHHHHHHHHHHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCC
Confidence 999999999999999998765 569999999999999999998888764 55677788888999999999999999999
Q ss_pred cHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHH
Q 008544 359 CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATER 429 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~ 429 (562)
|++++|||+||+|||+|+.++ .|++.++.+|++++ |+++++++|.++++++.. .|+++++ ++|+|+.++++
T Consensus 284 ~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 363 (371)
T cd04962 284 GLAALEAMACGVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQ 363 (371)
T ss_pred ccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999998 99999999999975 999999999999998775 6777666 68999999999
Q ss_pred HHHHHHh
Q 008544 430 FLQVAEL 436 (562)
Q Consensus 430 ~~~~y~~ 436 (562)
+.+.|+.
T Consensus 364 ~~~~y~~ 370 (371)
T cd04962 364 YEALYRR 370 (371)
T ss_pred HHHHHHh
Confidence 9999975
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.6e-33 Score=287.60 Aligned_cols=347 Identities=18% Similarity=0.189 Sum_probs=247.4
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++++..++|..+|++..+..++++|.++| |+|+++++.... ....+.... ... .
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g-~~v~~~~~~~~~--~~~~~~~~~------------------~~~---~ 56 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG-HEVLVIAPGPFR--ESEGPARVV------------------PVP---S 56 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC-CEEEEEeCCchh--hccCCCCce------------------eec---c
Confidence 6999999999998999999999999999998 999999883211 000000000 000 0
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
.....+.. ..........+.+.+++.+||+||++.+....+. +..+.++.+ |++..+|+.+..+.........
T Consensus 57 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 130 (364)
T cd03814 57 VPLPGYPE----IRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLA--ALRAARRLGIPVVTSYHTDFPEYLRYYGLGPL 130 (364)
T ss_pred cccCcccc----eEecccchhhHHHHHHhcCCCEEEEeccchhhHH--HHHHHHHcCCCEEEEEecChHHHhhhcccchH
Confidence 00000000 0000111334666778889999999987665444 344555555 8999999887765543322222
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccCC----Cc-cccccccCCCCcCcchhhh-HHhhcCCCCCccEEEEEeecc
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPN----SI-VCNVHGVNPKFLEIGEKKM-EQQQNGNKAFTKGAYYIGRMV 283 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~----~~-~~~v~GVd~~~~~~~~~~~-~~~~~~~~~~~~~il~vGr~~ 283 (562)
.. ....+.+++.+. +|.+++.|+..++... .. ....+|+|.+.+.+..... .....+ ..+.+.++|+|++.
T Consensus 131 ~~-~~~~~~~~~~~~-~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 131 SW-LAWAYLRWFHNR-ADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred hH-hhHHHHHHHHHh-CCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhC-CCCCeEEEEEeccc
Confidence 22 212333333333 7999999988877322 11 2223588887765543322 122222 34467899999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHH
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTA 361 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~ 361 (562)
+.||++.+++++.++..+ ++++|+++|.|++.+.++ ....++.+++. .++..++|+.||++++||..|++|++
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~ 282 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLV 282 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcH
Confidence 999999999999999877 899999999988776665 33345666664 45666999999999999999999999
Q ss_pred HHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHH
Q 008544 362 TAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQV 433 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~ 433 (562)
++||||||+|||+++.++ .+++.++.+|++++ |.++++++|.++++|++. +|+++++ ++|+|+.+.+++++.
T Consensus 283 ~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (364)
T cd03814 283 VLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHh
Confidence 999999999999999998 89999989999874 888899999999998886 7777777 589999999999998
Q ss_pred HH
Q 008544 434 AE 435 (562)
Q Consensus 434 y~ 435 (562)
|+
T Consensus 363 ~~ 364 (364)
T cd03814 363 YR 364 (364)
T ss_pred hC
Confidence 84
No 10
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=5.2e-33 Score=290.58 Aligned_cols=345 Identities=12% Similarity=0.102 Sum_probs=239.3
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
++|+.+...+ ..||++.....++++|.+.| |++++++.... +. +. ...... .+..
T Consensus 2 ~~il~ii~~~--~~GG~e~~~~~l~~~l~~~~-~~~~v~~~~~~--~~---~~------------~~~~~~---~i~~-- 56 (374)
T TIGR03088 2 PLIVHVVYRF--DVGGLENGLVNLINHLPADR-YRHAVVALTEV--SA---FR------------KRIQRP---DVAF-- 56 (374)
T ss_pred ceEEEEeCCC--CCCcHHHHHHHHHhhccccc-cceEEEEcCCC--Ch---hH------------HHHHhc---CceE--
Confidence 6899998876 35888889999999999987 99988874110 00 00 000000 0000
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-C-EEEEEcCCcHHHHhhhhch
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~-vi~~~h~~~~~~~~~~~~~ 207 (562)
..+...+ ......+..+.+++++.+|||||+|+.... . +...+...+ + .+.+.|.... +. ... .
T Consensus 57 -~~~~~~~------~~~~~~~~~l~~~l~~~~~Divh~~~~~~~--~--~~~~~~~~~~~~~i~~~h~~~~-~~-~~~-~ 122 (374)
T TIGR03088 57 -YALHKQP------GKDVAVYPQLYRLLRQLRPDIVHTRNLAAL--E--AQLPAALAGVPARIHGEHGRDV-FD-LDG-S 122 (374)
T ss_pred -EEeCCCC------CCChHHHHHHHHHHHHhCCCEEEEcchhHH--H--HHHHHHhcCCCeEEEeecCccc-cc-chh-h
Confidence 0010000 011112445778888999999999976443 1 111222222 3 3334442211 00 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcchhh--hHHhhcCCCCCccEEE
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGEKK--MEQQQNGNKAFTKGAY 277 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~~~--~~~~~~~~~~~~~~il 277 (562)
......+.++..+. +|.++++|+..++.. .+.+ ...+|+|.+.+.+.... .........++.++++
T Consensus 123 ---~~~~~~~~~~~~~~-~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (374)
T TIGR03088 123 ---NWKYRWLRRLYRPL-IHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVG 198 (374)
T ss_pred ---HHHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEE
Confidence 11122233333333 799999998877732 2222 33469998777654211 1112223345577999
Q ss_pred EEeeccccCCHHHHHHHHHHHHHhcC----CcEEEEEeCCCCHHHHHHHHHhcCCeeE--EeCCCCChHHHHhhcCEEEE
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKELA----GLEMDLYGNGEDFDQIQRAAKKLKLVVR--VYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~~~----~~~l~ivG~g~~~~~l~~~~~~l~l~~~--~~~~~~~~~~l~~~adv~v~ 351 (562)
|+||+.++||++.+++++.++.++.+ +++|+++|+|+..+++++.++++++... +.+..++..++|+.+|++|+
T Consensus 199 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ 278 (374)
T TIGR03088 199 TVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVL 278 (374)
T ss_pred EEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEe
Confidence 99999999999999999999987765 6899999999988999999999887643 34567888899999999999
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCC--CccHHHH----hcCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLS 422 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~s 422 (562)
||..|+||++++|||+||+|||+|+.++ .|++.++.+|+++ +|+++++++|.++++++.. .|+++++ ++|+
T Consensus 279 pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs 358 (374)
T TIGR03088 279 PSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFS 358 (374)
T ss_pred ccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999998 9999999999987 4999999999999998765 6777665 7999
Q ss_pred HHHHHHHHHHHHHhc
Q 008544 423 WESATERFLQVAELV 437 (562)
Q Consensus 423 w~~~~~~~~~~y~~~ 437 (562)
|+.+++++.++|+..
T Consensus 359 ~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 359 INAMVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1e-32 Score=297.16 Aligned_cols=376 Identities=15% Similarity=0.153 Sum_probs=243.0
Q ss_pred CeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc------cCCCceeCCchhhHHHHHHHh
Q 008544 50 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV------YPGNITFASPKEQEAYVRWWL 121 (562)
Q Consensus 50 ~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~------~p~~i~~~~~~~~~~~~~~~~ 121 (562)
|||+++|.-+.|+ .||.+.....|+++|+++| |+|.|++|.+........ ....+.+.... ..++.|.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G-~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 76 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG-HDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRT---LYVKVFE 76 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC-CeEEEEecCCcChhhhhccCeEEEEEEEEeecCce---eEEEEEE
Confidence 6899999888887 7899999999999999998 999999997744221100 00000000000 0000000
Q ss_pred ----hhccCCCCC---ccc--ccccccc-hhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHHHHhhc---
Q 008544 122 ----EDRTGFTST---FDT--RFYPGKF-AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKF--- 186 (562)
Q Consensus 122 ----~~~~~~~~~---~~i--~~y~~r~-~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~~~~~~--- 186 (562)
..++.+... +.- ..|..-+ ....+..+-.....++++ ..+|||||+|++... .. +..++...
T Consensus 77 ~~~~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~--~~~l~~~~~~~ 153 (473)
T TIGR02095 77 GVVEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LV--PALLKAVYRPN 153 (473)
T ss_pred EEECCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HH--HHHHHhhccCC
Confidence 000000000 000 0111000 000011111111222332 468999999986543 22 22233322
Q ss_pred -CCEEEEEcCCcHHH-H-----hhhhch--HHH-HH-----HHHHHHHHHHHHhccEEEEcChhhhccC-----------
Q 008544 187 -RFVVGIVHTNYLEY-V-----KREKND--RLQ-AF-----LLEFVNSWLARVHCHKVIRLSAATQEYP----------- 240 (562)
Q Consensus 187 -~~vi~~~h~~~~~~-~-----~~~~~~--~~~-~~-----~~~~~~~~~~~~~ad~vi~~S~~~~~~~----------- 240 (562)
.|.|.++|+....- . ...+.. ... .. ....+ +...+ +||.++++|+..++..
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~~-~ad~v~tVS~~~~~ei~~~~~~~~l~~ 231 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFL-KGGIV-YADRVTTVSPTYAREILTPEFGYGLDG 231 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHH-HHHHH-hCCcCeecCHhHHHHhcCCcCCccchh
Confidence 48999999653110 0 000000 000 00 00011 11122 4899999998765521
Q ss_pred ------CCccccccccCCCCcCcchh-------------------hhHHhhcCCCC--CccEEEEEeeccccCCHHHHHH
Q 008544 241 ------NSIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA--FTKGAYYIGRMVWSKGYEELLG 293 (562)
Q Consensus 241 ------~~~~~~v~GVd~~~~~~~~~-------------------~~~~~~~~~~~--~~~~il~vGr~~~~Kg~~~ll~ 293 (562)
.+.....||||.+.|.|... ...++..+++. +.++++|+||+.++||++.+++
T Consensus 232 ~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~ 311 (473)
T TIGR02095 232 VLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLA 311 (473)
T ss_pred HHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHH
Confidence 12234457999988775421 12344556654 6789999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEeCCC--CHHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCCCCcHHHHHHHHcC
Q 008544 294 LLNIYHKELAGLEMDLYGNGE--DFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDVVCTATAEALAMG 369 (562)
Q Consensus 294 a~~~l~~~~~~~~l~ivG~g~--~~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E~~~~~~lEAma~G 369 (562)
|+.++.++ +++|+|+|+|+ ..+++++++++++.++.++++.++. ..+|+.+|++++||.+|+||++++|||+||
T Consensus 312 a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G 389 (473)
T TIGR02095 312 ALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYG 389 (473)
T ss_pred HHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCC
Confidence 99999765 59999999985 3577888888777667777665543 479999999999999999999999999999
Q ss_pred CcEEeeCCCC-ccccccC------CceEeeC--CHHHHHHHHHHHHh----CCCC--CccHHHH-hcCCHHHHHHHHHHH
Q 008544 370 KIVVCANHPS-NDFFKQF------PNCRTYD--GRNGFVEATLKALA----EEPA--QPTDAQT-HQLSWESATERFLQV 433 (562)
Q Consensus 370 ~PVI~t~~~~-~e~v~~~------~~g~~~~--d~~~la~~i~~ll~----~~~~--~l~~~ar-~~~sw~~~~~~~~~~ 433 (562)
+|||+++.++ .|++.++ .+|++++ |+++++++|.+++. +++. +|++++. +.|||+++++++.++
T Consensus 390 ~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~ 469 (473)
T TIGR02095 390 TVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQYVEL 469 (473)
T ss_pred CCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 9999999998 9999888 8999984 99999999999887 5553 7777776 789999999999999
Q ss_pred HHh
Q 008544 434 AEL 436 (562)
Q Consensus 434 y~~ 436 (562)
|+.
T Consensus 470 Y~~ 472 (473)
T TIGR02095 470 YRS 472 (473)
T ss_pred HHh
Confidence 985
No 12
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=7.1e-34 Score=274.46 Aligned_cols=352 Identities=17% Similarity=0.179 Sum_probs=247.7
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc-c-CCCceeCCchhhHHHHHHHhhhccCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-Y-PGNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~-~-p~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
.+|++|++.|+|..||++.+++.+++.|.+.| |.|.+++..+.. +..+ | .++.++...+. .+..
T Consensus 1 ~~i~mVsdff~P~~ggveshiy~lSq~li~lg-hkVvvithayg~--r~girylt~glkVyylp~-----------~v~~ 66 (426)
T KOG1111|consen 1 SRILMVSDFFYPSTGGVESHIYALSQCLIRLG-HKVVVITHAYGN--RVGIRYLTNGLKVYYLPA-----------VVGY 66 (426)
T ss_pred CcceeeCcccccCCCChhhhHHHhhcchhhcC-CeEEEEeccccC--ccceeeecCCceEEEEee-----------eeee
Confidence 37999999999999999999999999999998 999999985532 2211 1 12222111111 0000
Q ss_pred CCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhc-hHHHHhhcC-CEEEEEcCCcHHHHhhhh
Q 008544 128 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHH-GKRWKAKFR-FVVGIVHTNYLEYVKREK 205 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~-~~~~~~~~~-~vi~~~h~~~~~~~~~~~ 205 (562)
.+..+ |. ..+- +.-++..+.+++..|+|.|+++.. ++| +.+.++.++ +.+++-|..|..-
T Consensus 67 -n~tT~---pt-----v~~~--~Pllr~i~lrE~I~ivhghs~fS~--lahe~l~hartMGlktVfTdHSlfGfa----- 128 (426)
T KOG1111|consen 67 -NQTTF---PT-----VFSD--FPLLRPILLRERIEIVHGHSPFSY--LAHEALMHARTMGLKTVFTDHSLFGFA----- 128 (426)
T ss_pred -cccch---hh-----hhcc--CcccchhhhhhceEEEecCChHHH--HHHHHHHHHHhcCceEEEecccccccc-----
Confidence 00000 11 0000 222666777789999999988765 333 334455555 7888888754321
Q ss_pred chHHHHHHHHHHHHHHHHHhccEEEEcChhhhcc--------CCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEE
Q 008544 206 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY--------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY 277 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~--------~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il 277 (562)
.+...+...+... .....|++||+|...++- +.+..+..|.++...|.|.... ....+...|+
T Consensus 129 --d~~si~~n~ll~~-sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~------~~S~~i~~iv 199 (426)
T KOG1111|consen 129 --DIGSILTNKLLPL-SLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD------KPSADIITIV 199 (426)
T ss_pred --chhhhhhcceeee-eecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc------cCCCCeeEEE
Confidence 1111222211111 111479999999999882 2233344467788777764332 1122247899
Q ss_pred EEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEE--eCC--CCChHHHHhhcCEEEEcc
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV--YPG--RDHADPIFHDYKVFLNPS 353 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~--~~~--~~~~~~l~~~adv~v~pS 353 (562)
.++|+.++||+|.++++++++++++|+++++|+|+||.+..+++..+++.+..++ +|. .+++.+.|.+.|+|++||
T Consensus 200 v~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntS 279 (426)
T KOG1111|consen 200 VASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTS 279 (426)
T ss_pred EEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccH
Confidence 9999999999999999999999999999999999999998888888888777554 444 455559999999999999
Q ss_pred CCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee-CCHHHHHHHHHHHHhCCCC-Cc--cHHHHhcCCHHHHHH
Q 008544 354 TTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA-QP--TDAQTHQLSWESATE 428 (562)
Q Consensus 354 ~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~-~d~~~la~~i~~ll~~~~~-~l--~~~ar~~~sw~~~~~ 428 (562)
..|.||++++|||+||+|||+|+.|| +|++.++ .-+.. .+++++++++++++..-.. .. -+.-.+.|+|+.+++
T Consensus 280 lTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa~ 358 (426)
T KOG1111|consen 280 LTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVAE 358 (426)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999 9999554 12122 4899999999999876554 23 333338999999999
Q ss_pred HHHHHHHhcCccccc
Q 008544 429 RFLQVAELVGDVVTK 443 (562)
Q Consensus 429 ~~~~~y~~~~~~~~~ 443 (562)
+..++|..+......
T Consensus 359 rTekvy~r~~~t~~~ 373 (426)
T KOG1111|consen 359 RTEKVYDRAATTSIR 373 (426)
T ss_pred HHHHHHHHHhhccCc
Confidence 999999998855443
No 13
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.7e-32 Score=303.65 Aligned_cols=366 Identities=15% Similarity=0.119 Sum_probs=239.1
Q ss_pred ccCCeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc--cCCCceeCCchhhHHHHHHHh-
Q 008544 47 RKQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV--YPGNITFASPKEQEAYVRWWL- 121 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~--~p~~i~~~~~~~~~~~~~~~~- 121 (562)
.++|||++|+.-+.|. .||.+..+..|+++|++.| |+|.|++|.+........ .+....+.-... .++.|.
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G-h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~---~~~v~~~ 660 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN-HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGT---EIKVWFG 660 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC-CEEEEEecCCcccchhhcccceEEEEeccCCE---EEEEEEE
Confidence 3559999999888896 6888889999999999998 999999997643111000 000000000000 000000
Q ss_pred ---hhccCCCCCc-cc----ccccccchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHHHHhh-----c
Q 008544 122 ---EDRTGFTSTF-DT----RFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAK-----F 186 (562)
Q Consensus 122 ---~~~~~~~~~~-~i----~~y~~r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~~~~~-----~ 186 (562)
..++.+.... .+ ..|.. .....+..+-.....+++. ..+|||||+|..... +. +..+... +
T Consensus 661 ~~~GV~vyfl~~~~~~F~r~~~Yg~-~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~ta-lv--a~llk~~~~~~~~ 736 (1036)
T PLN02316 661 KVEGLSVYFLEPQNGMFWAGCVYGC-RNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSA-PV--AWLFKDHYAHYGL 736 (1036)
T ss_pred EECCcEEEEEeccccccCCCCCCCc-hhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHH-HH--HHHHHHhhhhhcc
Confidence 0000000000 00 00100 0000111111111222322 358999999987443 33 1222221 1
Q ss_pred --CCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc-c------C---CCccccccccCCCC
Q 008544 187 --RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE-Y------P---NSIVCNVHGVNPKF 254 (562)
Q Consensus 187 --~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~------~---~~~~~~v~GVd~~~ 254 (562)
.|+|.++|... +.. ..+...+. +||.|+++|+..++ + . .+...+.||||+..
T Consensus 737 ~~~p~V~TiHnl~--~~~------------n~lk~~l~--~AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~ 800 (1036)
T PLN02316 737 SKARVVFTIHNLE--FGA------------NHIGKAMA--YADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDI 800 (1036)
T ss_pred CCCCEEEEeCCcc--cch------------hHHHHHHH--HCCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccc
Confidence 37999999542 110 01112222 37999999988765 1 1 12234457999976
Q ss_pred cCcchh--------------------hhHHhhcCCC-CCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCC
Q 008544 255 LEIGEK--------------------KMEQQQNGNK-AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNG 313 (562)
Q Consensus 255 ~~~~~~--------------------~~~~~~~~~~-~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g 313 (562)
|.|... ...++..+++ .+.++|+||||+.++||++.|++|+..+.+. +++|+|+|+|
T Consensus 801 w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~--~~qlVIvG~G 878 (1036)
T PLN02316 801 WDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER--NGQVVLLGSA 878 (1036)
T ss_pred cCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc--CcEEEEEeCC
Confidence 654321 1124456666 3578999999999999999999999988753 7999999999
Q ss_pred CC---HHHHHHHHHhcCC----eeEEeCCCCChH--HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-cccc
Q 008544 314 ED---FDQIQRAAKKLKL----VVRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFF 383 (562)
Q Consensus 314 ~~---~~~l~~~~~~l~l----~~~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v 383 (562)
++ .+.++++++++++ .+.+++++++.. .+|+.+|+||+||.+|+||++.+|||+||+|+|+++.|| .|.|
T Consensus 879 pd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV 958 (1036)
T PLN02316 879 PDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTV 958 (1036)
T ss_pred CCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhc
Confidence 76 3678888887764 355666766653 799999999999999999999999999999999999998 8888
Q ss_pred ccC-------------CceEeeC--CHHHHHHHHHHHHhCCCC---CccHHHH----hcCCHHHHHHHHHHHHHhcC
Q 008544 384 KQF-------------PNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQT----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 384 ~~~-------------~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~~ar----~~~sw~~~~~~~~~~y~~~~ 438 (562)
.++ .+|++++ |+++++.+|.+++.+... .+++.++ +.|||+.++++|+++|+.+.
T Consensus 959 ~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 959 FDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred cccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 774 6899985 999999999999987422 3444443 78999999999999998764
No 14
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.2e-32 Score=283.61 Aligned_cols=345 Identities=11% Similarity=0.016 Sum_probs=231.6
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.+ ..||++..+.+++++|.+.| |+|+++++... +. .+. ..+ .+... . ..
T Consensus 1 ki~~~~~~~--~~GGv~~~~~~l~~~l~~~g-~~v~~~~~~~~--~~--~~~------~~~----~~~~~----~---~g 56 (372)
T cd03792 1 KVLHVNSTP--YGGGVAEILHSLVPLMRDLG-VDTRWEVIKGD--PE--FFN------VTK----KFHNA----L---QG 56 (372)
T ss_pred CeEEEeCCC--CCCcHHHHHHHHHHHHHHcC-CCceEEecCCC--hh--HHH------HHH----HhhHh----h---cC
Confidence 689998875 46898888999999999998 99999987221 00 000 000 00000 0 00
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhh-cCCEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FRFVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
.++.. +......... .....+.+.+...+|||||+|++....+. .+.+. ..|+|.+.|+.+..+.
T Consensus 57 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~----~~~~~~~~~~i~~~H~~~~~~~-------- 122 (372)
T cd03792 57 ADIEL-SEEEKEIYLE-WNEENAERPLLDLDADVVVIHDPQPLALP----LFKKKRGRPWIWRCHIDLSSPN-------- 122 (372)
T ss_pred CCCCC-CHHHHHHHHH-HHHHHhccccccCCCCEEEECCCCchhHH----HhhhcCCCeEEEEeeeecCCCc--------
Confidence 11111 1110000000 00001111345678999999988744221 12222 2378889997653211
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhc--cCCCccccccccCCCC-c----CcchhhhHHhhcCCCCCccEEEEEeec
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQE--YPNSIVCNVHGVNPKF-L----EIGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~--~~~~~~~~v~GVd~~~-~----~~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
....+.+...+.+ +|.+++.|..... +..+.....+|||+.. + .+......+...+.+++.++++++||+
T Consensus 123 -~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl 199 (372)
T cd03792 123 -RRVWDFLQPYIED--YDAAVFHLPEYVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRF 199 (372)
T ss_pred -HHHHHHHHHHHHh--CCEEeecHHHhcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEecc
Confidence 1122333333444 5888888733322 2223334446898742 1 111222334456777778999999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCH-----HHHHHHHHhcCC--eeEEeCCC----CChHHHHhhcCEEEE
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF-----DQIQRAAKKLKL--VVRVYPGR----DHADPIFHDYKVFLN 351 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~-----~~l~~~~~~l~l--~~~~~~~~----~~~~~l~~~adv~v~ 351 (562)
.+.||++.+++++..+.+..|+++|+++|+|+.. +.+++..+..+. ++.+++.. .+..++|+.+|+|++
T Consensus 200 ~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~ 279 (372)
T cd03792 200 DPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQ 279 (372)
T ss_pred ccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEe
Confidence 9999999999999999888789999999998642 234444434443 35555543 445589999999999
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHH
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWE 424 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~ 424 (562)
||..|+||++++||||||+|||+++.++ .+++.++.+|+++++.++++++|.+++++++. .|+++++ ++|+|+
T Consensus 280 ~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~ 359 (372)
T cd03792 280 KSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLIT 359 (372)
T ss_pred CCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHH
Confidence 9999999999999999999999999987 89999999999999999999999999998765 7777776 689999
Q ss_pred HHHHHHHHHHHh
Q 008544 425 SATERFLQVAEL 436 (562)
Q Consensus 425 ~~~~~~~~~y~~ 436 (562)
.+++++++.|+.
T Consensus 360 ~~~~~~~~~~~~ 371 (372)
T cd03792 360 RHLKDYLYLISK 371 (372)
T ss_pred HHHHHHHHHHHh
Confidence 999999999985
No 15
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=6.5e-32 Score=284.47 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=200.9
Q ss_pred HHhhcCcCCCcEEEecCCchhhhhhchHHHHh--hcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEE
Q 008544 153 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 229 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~--~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 229 (562)
+.+.+++.+||+||+|..... +. +..++. ..+ +++.++|......... ...+...+...+.+ +|.+
T Consensus 110 ~~~~~~~~~~diihaH~~~~~-~~--~~~~~~~~~~~~~~~~t~Hg~d~~~~~~------~~~~~~~~~~~~~~--ad~v 178 (406)
T PRK15427 110 CAQVATPFVADVFIAHFGPAG-VT--AAKLRELGVLRGKIATIFHGIDISSREV------LNHYTPEYQQLFRR--GDLM 178 (406)
T ss_pred HhhhhccCCCCEEEEcCChHH-HH--HHHHHHhCCCCCCeEEEEcccccccchh------hhhhhHHHHHHHHh--CCEE
Confidence 345567889999999986543 22 233333 222 6788999642211100 00111122223333 7999
Q ss_pred EEcChhhhccC------CCccc-cccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhc
Q 008544 230 IRLSAATQEYP------NSIVC-NVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 302 (562)
Q Consensus 230 i~~S~~~~~~~------~~~~~-~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 302 (562)
+++|+..++.. .+++. ..+|+|.+.|.+.... ...+...++|+||+.+.||++.++++++.+.++.
T Consensus 179 v~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~-------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~ 251 (406)
T PRK15427 179 LPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVK-------APATPLEIISVARLTEKKGLHVAIEACRQLKEQG 251 (406)
T ss_pred EECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCccc-------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhC
Confidence 99998877732 22232 3369998777542211 1123567999999999999999999999998888
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeE--EeCCC--CChHHHHhhcCEEEEccCC------CCCcHHHHHHHHcCCcE
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVR--VYPGR--DHADPIFHDYKVFLNPSTT------DVVCTATAEALAMGKIV 372 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~--~~~~~--~~~~~l~~~adv~v~pS~~------E~~~~~~lEAma~G~PV 372 (562)
++++|+|+|+|+..+++++.+++++++.+ +.|.. +++.++|+.||+||+||.. ||+|++++||||||+||
T Consensus 252 ~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PV 331 (406)
T PRK15427 252 VAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPV 331 (406)
T ss_pred CCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCE
Confidence 89999999999999999999999987644 44543 3455999999999999974 99999999999999999
Q ss_pred EeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHh-CCCC--CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 373 VCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALA-EEPA--QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 373 I~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~-~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
|+|+.++ .|++.++.+|++++ |+++++++|.++++ |++. +|+++++ ++|+|+..++++.++|+.
T Consensus 332 I~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 332 VSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999998 99999999999984 99999999999999 7764 7888887 889999999999999875
No 16
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=4e-32 Score=297.93 Aligned_cols=388 Identities=16% Similarity=0.136 Sum_probs=245.4
Q ss_pred ccCCeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-C--CceeCC-chhhHHHHHHH
Q 008544 47 RKQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-G--NITFAS-PKEQEAYVRWW 120 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-~--~i~~~~-~~~~~~~~~~~ 120 (562)
.+++||++|+.-..|+ .||-+-.+-.|.++|++.| |+|.|++|.|.......+.. . ...+.. ........+.|
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G-hdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 557 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG-HLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIW 557 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcC-CeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEE
Confidence 3559999999988897 5888888899999999998 99999999875332110000 0 000000 00000000000
Q ss_pred hh----hccCCCC-C-----c-ccccccccchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHH-HHh-h
Q 008544 121 LE----DRTGFTS-T-----F-DTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKR-WKA-K 185 (562)
Q Consensus 121 ~~----~~~~~~~-~-----~-~i~~y~~r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~-~~~-~ 185 (562)
.. ..+.+.. . | +-..|.. .....+..+-.....+++. ..+|||||+|.+......+.... +.. .
T Consensus 558 ~~~~~GV~vyfId~~~~~~fF~R~~iYg~-~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~ 636 (977)
T PLN02939 558 TGTVEGLPVYFIEPQHPSKFFWRAQYYGE-HDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKG 636 (977)
T ss_pred EEEECCeeEEEEecCCchhccCCCCCCCC-ccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhcc
Confidence 00 0001100 0 0 0001100 0011111111222333443 36899999999876522111000 100 1
Q ss_pred cC--CEEEEEcCCc-HHH-----Hhhhhch--------HHHHHHHHHHHHHHHHH-hccEEEEcChhhhcc---------
Q 008544 186 FR--FVVGIVHTNY-LEY-----VKREKND--------RLQAFLLEFVNSWLARV-HCHKVIRLSAATQEY--------- 239 (562)
Q Consensus 186 ~~--~vi~~~h~~~-~~~-----~~~~~~~--------~~~~~~~~~~~~~~~~~-~ad~vi~~S~~~~~~--------- 239 (562)
+. ++|.++|..- ... ....+.. .+...+...++..-..+ +||.|+++|+..++-
T Consensus 637 ~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL 716 (977)
T PLN02939 637 FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGL 716 (977)
T ss_pred CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccch
Confidence 22 7999999651 110 0000000 00000011111111111 589999999776652
Q ss_pred ------CC-CccccccccCCCCcCcchh-------------------hhHHhhcCCCC---CccEEEEEeeccccCCHHH
Q 008544 240 ------PN-SIVCNVHGVNPKFLEIGEK-------------------KMEQQQNGNKA---FTKGAYYIGRMVWSKGYEE 290 (562)
Q Consensus 240 ------~~-~~~~~v~GVd~~~~~~~~~-------------------~~~~~~~~~~~---~~~~il~vGr~~~~Kg~~~ 290 (562)
.. +...+.||||++.|.|... ...+...+++. +.++|+||||+.++||++.
T Consensus 717 ~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDl 796 (977)
T PLN02939 717 QDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHL 796 (977)
T ss_pred HHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHH
Confidence 11 2234558999987776532 22345567653 4689999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCH---HHHHHHHHhcCCe--eEEeCCCCChH--HHHhhcCEEEEccCCCCCcHHHH
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGEDF---DQIQRAAKKLKLV--VRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATA 363 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~~---~~l~~~~~~l~l~--~~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~l 363 (562)
+++|+..+.. ++++|+|+|+|++. +.+++++++++.. +.+.+++++.. .+|+.+|+||+||.+|+||++++
T Consensus 797 LleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqL 874 (977)
T PLN02939 797 IRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQM 874 (977)
T ss_pred HHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHH
Confidence 9999988764 47999999999763 6778888888764 56667777654 79999999999999999999999
Q ss_pred HHHHcCCcEEeeCCCC-cccccc---------CCceEeeC--CHHHHHHHHHHHHh----CCCC--CccHHHH-hcCCHH
Q 008544 364 EALAMGKIVVCANHPS-NDFFKQ---------FPNCRTYD--GRNGFVEATLKALA----EEPA--QPTDAQT-HQLSWE 424 (562)
Q Consensus 364 EAma~G~PVI~t~~~~-~e~v~~---------~~~g~~~~--d~~~la~~i~~ll~----~~~~--~l~~~ar-~~~sw~ 424 (562)
|||+||+|+|+++.|| .|.|.+ +.+|++++ |+++|+++|.+++. ++.. .|++++. +.|||+
T Consensus 875 EAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe 954 (977)
T PLN02939 875 IAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWD 954 (977)
T ss_pred HHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHH
Confidence 9999999999999998 887765 57899974 99999999999876 4443 6776665 789999
Q ss_pred HHHHHHHHHHHhcC
Q 008544 425 SATERFLQVAELVG 438 (562)
Q Consensus 425 ~~~~~~~~~y~~~~ 438 (562)
.++++|.++|+...
T Consensus 955 ~~A~qYeeLY~~ll 968 (977)
T PLN02939 955 SSASQYEELYQRAV 968 (977)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999776
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.2e-32 Score=285.86 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=234.5
Q ss_pred CeEEEEecccCCCc-ccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 50 QHIAIFTTASLPWL-TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 50 ~rI~ivt~~~~P~~-~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
|||+++++.|+|.. ||++.++..+++.|.++ |+|+|++..... . ..++++..... .| ..
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~--~~v~v~~~~~~~---~--~~~~~~~~~~~-------~~--~~---- 60 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL--MDVDVRCFGDQR---F--DSEGLTVKGYR-------PW--SE---- 60 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh--cCeeEEcCCCch---h--cCCCeEEEEec-------Ch--hh----
Confidence 68999999999885 88889999999999885 577777652110 0 00111110000 00 00
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhh-cC-CEEEEEcCCcHHHHhhh-h
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FR-FVVGIVHTNYLEYVKRE-K 205 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~-~~-~vi~~~h~~~~~~~~~~-~ 205 (562)
+. ........ ...++.......++|+||+|..... +. ..+..+ .+ |++.++|+.++...... .
T Consensus 61 ----~~----~~~~~~~~--~~~~~~~~~~~~~~divh~~~~~~~-~~---~~~~~~~~~~p~v~~~h~~~~~~~~~~~~ 126 (388)
T TIGR02149 61 ----LK----EANKALGT--FSVDLAMANDPVDADVVHSHTWYTF-LA---GHLAKKLYDKPLVVTAHSLEPLRPWKEEQ 126 (388)
T ss_pred ----cc----chhhhhhh--hhHHHHHhhCCCCCCeEeecchhhh-hH---HHHHHHhcCCCEEEEeecccccccccccc
Confidence 00 00000000 0112222233457999999986543 22 223333 23 89999997643211000 0
Q ss_pred chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC--------CCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEE
Q 008544 206 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP--------NSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGA 276 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~--------~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~i 276 (562)
.... ..+...+.+...+. +|.++++|+..++.. ...+ ...+|+|+..+.+......+...+.+.+.+++
T Consensus 127 ~~~~-~~~~~~~~~~~~~~-ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i 204 (388)
T TIGR02149 127 LGGG-YKLSSWAEKTAIEA-ADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYI 204 (388)
T ss_pred cccc-hhHHHHHHHHHHhh-CCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEE
Confidence 0000 01222233333333 899999998876621 1223 33469998877665444445566677777899
Q ss_pred EEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCH----HHHHHHHHhcCC---eeEEeCC---CCChHHHHhhc
Q 008544 277 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF----DQIQRAAKKLKL---VVRVYPG---RDHADPIFHDY 346 (562)
Q Consensus 277 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~----~~l~~~~~~l~l---~~~~~~~---~~~~~~l~~~a 346 (562)
+|+||+.+.||++.++++++++. ++++++++|+|++. +.+++.+..++. ++.++++ .++..++|+.+
T Consensus 205 ~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a 281 (388)
T TIGR02149 205 LFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNA 281 (388)
T ss_pred EEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhC
Confidence 99999999999999999998874 36889999887653 455666666554 2455555 34566999999
Q ss_pred CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CH------HHHHHHHHHHHhCCCC--CccH
Q 008544 347 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GR------NGFVEATLKALAEEPA--QPTD 415 (562)
Q Consensus 347 dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~------~~la~~i~~ll~~~~~--~l~~ 415 (562)
|++|+||..|++|++++|||+||+|||+++.++ .|++.++.+|++++ |+ ++++++|.+++++++. +|++
T Consensus 282 Dv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~ 361 (388)
T TIGR02149 282 EVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGI 361 (388)
T ss_pred CEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999999999999999999999998 99999999999974 66 8999999999998875 7777
Q ss_pred HHH----hcCCHHHHHHHHHHHHHhc
Q 008544 416 AQT----HQLSWESATERFLQVAELV 437 (562)
Q Consensus 416 ~ar----~~~sw~~~~~~~~~~y~~~ 437 (562)
+++ ++|+|+.+++++.++|+..
T Consensus 362 ~a~~~~~~~~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 362 AGRKRAEEEFSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 776 6899999999999999864
No 18
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=3.3e-32 Score=290.20 Aligned_cols=353 Identities=15% Similarity=0.125 Sum_probs=220.3
Q ss_pred CCCcccccccHHHHHHHHHHcCCC--eEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCccccccc
Q 008544 60 LPWLTGTAVNPLFRAAYLAKDGER--RVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYP 137 (562)
Q Consensus 60 ~P~~~G~a~~~~~la~~L~~~Gg~--eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~ 137 (562)
.|..||++.++.++++.|+++| | +|+|+|.......-..-|.... . +. ..-.+-.++...+
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G-~~~~V~v~t~~~~~~~~~~~~~~~~--~--~~------------~~gv~v~r~~~~~ 84 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRS-EVEQVDLVTRLIKDAKVSPDYAQPI--E--RI------------APGARIVRLPFGP 84 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCC-CCcEEEEEeccccCcCCCCccCCCe--e--Ee------------CCCcEEEEecCCC
Confidence 4888999999999999999998 6 9999996321100000011000 0 00 0000001111111
Q ss_pred ccchhccchh-----hhHHhHHhhcCc--CCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh-h---
Q 008544 138 GKFAADKKSI-----LAVGDITEIIPD--EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE-K--- 205 (562)
Q Consensus 138 ~r~~~~~~~~-----~~~~~l~~~i~~--~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~-~--- 205 (562)
.++.. .... .....+.+.+++ .+|||||+|.... ++. +..+++..+ |+|.+.|+......... .
T Consensus 85 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~-~~~--~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~ 160 (439)
T TIGR02472 85 RRYLR-KELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADA-GYV--GARLSRLLGVPLIFTGHSLGREKRRRLLAAGL 160 (439)
T ss_pred CCCcC-hhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhH-HHH--HHHHHHHhCCCEEEecccccchhhhhcccCCC
Confidence 11100 0000 011235555554 3799999997543 333 333444444 89999996432111100 0
Q ss_pred -chHHHHH--HHHH--HHHHHHHHhccEEEEcChhh-hc-------cCCCcc-ccccccCCCCcCcchhhh-------HH
Q 008544 206 -NDRLQAF--LLEF--VNSWLARVHCHKVIRLSAAT-QE-------YPNSIV-CNVHGVNPKFLEIGEKKM-------EQ 264 (562)
Q Consensus 206 -~~~~~~~--~~~~--~~~~~~~~~ad~vi~~S~~~-~~-------~~~~~~-~~v~GVd~~~~~~~~~~~-------~~ 264 (562)
...+... +... ..++..+ .+|.||++|... ++ ++.+++ +..||||++.|.+..... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~ 239 (439)
T TIGR02472 161 KPQQIEKQYNISRRIEAEEETLA-HASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLL 239 (439)
T ss_pred ChhhhhhhcchHHHHHHHHHHHH-hCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHH
Confidence 0000000 0001 1222333 389999998543 22 233334 344799998776532211 11
Q ss_pred hhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEE-EEeCCCCHH-----------HHHHHHHhcCCeeE-
Q 008544 265 QQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD-LYGNGEDFD-----------QIQRAAKKLKLVVR- 331 (562)
Q Consensus 265 ~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~~~-----------~l~~~~~~l~l~~~- 331 (562)
+..+..++.++++|+||+.+.||++.+++|+..+....++.+++ ++|+|++.+ ++.++++++++..+
T Consensus 240 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V 319 (439)
T TIGR02472 240 APFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKV 319 (439)
T ss_pred HhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceE
Confidence 22334455789999999999999999999998643211123333 568776532 23445666666544
Q ss_pred -EeCC--CCChHHHHhhc----CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHH
Q 008544 332 -VYPG--RDHADPIFHDY----KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEA 401 (562)
Q Consensus 332 -~~~~--~~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~ 401 (562)
|.+. .+++.++|+.+ |+||+||..|+||++++||||||+|||+|+.++ .|++.++.+|++++ |+++++++
T Consensus 320 ~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~ 399 (439)
T TIGR02472 320 AYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASA 399 (439)
T ss_pred EecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHH
Confidence 4443 45666889877 999999999999999999999999999999998 99999999999974 99999999
Q ss_pred HHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHH
Q 008544 402 TLKALAEEPA--QPTDAQT----HQLSWESATERFLQVA 434 (562)
Q Consensus 402 i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y 434 (562)
|.++++|+.. .|+++++ ++|||+.+++++.++.
T Consensus 400 i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 400 LEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999998875 7888776 7899999999998875
No 19
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=1.9e-32 Score=293.46 Aligned_cols=381 Identities=13% Similarity=0.089 Sum_probs=238.7
Q ss_pred cCCeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc-cCCCceeCCc-h-------hhHHH
Q 008544 48 KQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGNITFASP-K-------EQEAY 116 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~-~p~~i~~~~~-~-------~~~~~ 116 (562)
++|||++|+.-..|+ .||-+-..-.|.++|+++| |+|.|+.|.+...+.... ......+..+ . .....
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g-~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHG-VEVRTLVPGYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAGG 80 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC-CcEEEEeCCCcchhhhhcCceEEEEEeeeCCceEEEEEEEeCC
Confidence 458999999888887 5787777888999999998 999999997754321100 0000000000 0 00000
Q ss_pred HHHHhh-hccCCCCCcccc------cccccchhccchhhhHH---hHHhh-cCcCCCcEEEecCCchhhhhhchHHHHh-
Q 008544 117 VRWWLE-DRTGFTSTFDTR------FYPGKFAADKKSILAVG---DITEI-IPDEEADIAVLEEPEHLTWFHHGKRWKA- 184 (562)
Q Consensus 117 ~~~~~~-~~~~~~~~~~i~------~y~~r~~~~~~~~~~~~---~l~~~-i~~~~pDvV~~~~~~~~~~~~~~~~~~~- 184 (562)
+..++- ....+.....+. -|+. ...+..+-.. .+.+. ..+.+|||||+|..... +++ ..+..
T Consensus 81 v~~~~~~~~~~f~r~~~~y~~~~~~~~~d---~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~--~~l~~~ 154 (485)
T PRK14099 81 LDLFVLDAPHLYDRPGNPYVGPDGKDWPD---NAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAP--AYLHYS 154 (485)
T ss_pred ceEEEEeChHhhCCCCCCCCCccCCCCCc---HHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHH--HHHHhC
Confidence 000000 000000000000 0111 1111111111 12222 24579999999995543 332 22221
Q ss_pred -hcC-CEEEEEcCCcHH-HH-h----hhhch--HHH--H-HHHHH--HHHHHHHHhccEEEEcChhhhccC---------
Q 008544 185 -KFR-FVVGIVHTNYLE-YV-K----REKND--RLQ--A-FLLEF--VNSWLARVHCHKVIRLSAATQEYP--------- 240 (562)
Q Consensus 185 -~~~-~vi~~~h~~~~~-~~-~----~~~~~--~~~--~-~~~~~--~~~~~~~~~ad~vi~~S~~~~~~~--------- 240 (562)
+.+ |.|.|+|+.... .. . ..+.. .+. . .+... +.+...+ +||.|+++|+..++..
T Consensus 155 ~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~-~ad~vitVS~~~a~ei~~~~~g~gl 233 (485)
T PRK14099 155 GRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ-LADRITTVSPTYALEIQGPEAGMGL 233 (485)
T ss_pred CCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH-hcCeeeecChhHHHHHhcccCCcCh
Confidence 222 799999965211 00 0 00000 000 0 00000 1122222 3899999998876621
Q ss_pred -------CCcc-ccccccCCCCcCcchh-------------------hhHHhhcCCC--CCccEEEEEeeccccCCHHHH
Q 008544 241 -------NSIV-CNVHGVNPKFLEIGEK-------------------KMEQQQNGNK--AFTKGAYYIGRMVWSKGYEEL 291 (562)
Q Consensus 241 -------~~~~-~~v~GVd~~~~~~~~~-------------------~~~~~~~~~~--~~~~~il~vGr~~~~Kg~~~l 291 (562)
...+ ...||||++.|.|... ...++..+++ ++.++++++||+.++||++.+
T Consensus 234 ~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~L 313 (485)
T PRK14099 234 DGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLL 313 (485)
T ss_pred HHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHH
Confidence 1122 3447999987766432 1223445665 346788999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEe-CCCCChHHHH-hhcCEEEEccCCCCCcHHHHHHHH
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVY-PGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~-~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma 367 (562)
++|+..+.+. +++|+|+|+|+. .+.+++++++++.++.++ +..+++..+| +.+|+||+||.+|+||++++|||+
T Consensus 314 i~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma 391 (485)
T PRK14099 314 LEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALR 391 (485)
T ss_pred HHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHH
Confidence 9999988754 799999999874 577888888776555444 4445555666 579999999999999999999999
Q ss_pred cCCcEEeeCCCC-ccccccC---------CceEeeC--CHHHHHHHHHH---HHhCCCC--CccHHHH-hcCCHHHHHHH
Q 008544 368 MGKIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLK---ALAEEPA--QPTDAQT-HQLSWESATER 429 (562)
Q Consensus 368 ~G~PVI~t~~~~-~e~v~~~---------~~g~~~~--d~~~la~~i~~---ll~~~~~--~l~~~ar-~~~sw~~~~~~ 429 (562)
||+|+|+++.|| .|.+.++ .+|++++ |+++++++|.+ +++|++. +|+++++ ++|||++++++
T Consensus 392 ~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~~~~fSw~~~a~~ 471 (485)
T PRK14099 392 YGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGMTTDVSWRNPAQH 471 (485)
T ss_pred CCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCChHHHHHH
Confidence 999888899988 8888765 6899974 99999999997 5666554 7777776 88999999999
Q ss_pred HHHHHHhcC
Q 008544 430 FLQVAELVG 438 (562)
Q Consensus 430 ~~~~y~~~~ 438 (562)
++++|+...
T Consensus 472 y~~lY~~l~ 480 (485)
T PRK14099 472 YAALYRSLV 480 (485)
T ss_pred HHHHHHHHH
Confidence 999999875
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=5.2e-32 Score=301.48 Aligned_cols=385 Identities=17% Similarity=0.140 Sum_probs=244.1
Q ss_pred hccCCeEEEEecccCC-----------CcccccccHHHHHHHHHHcCC-CeEEEEeecCCccccccccCCCceeCCchhh
Q 008544 46 DRKQQHIAIFTTASLP-----------WLTGTAVNPLFRAAYLAKDGE-RRVTLVIPWLSLIHQKQVYPGNITFASPKEQ 113 (562)
Q Consensus 46 ~~~~~rI~ivt~~~~P-----------~~~G~a~~~~~la~~L~~~Gg-~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~ 113 (562)
+.+++.|++|+-...| ..||..+++.++|++|+++|| |+|+|+|......+....|+.......+...
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 3456899999965553 345677889999999999865 4999999855321111112211111111000
Q ss_pred HHHHHHHhhhccCCCCC---ccccccccc-chhccchhhh-----HHhHHhhcC--------------cCCCcEEEecCC
Q 008544 114 EAYVRWWLEDRTGFTST---FDTRFYPGK-FAADKKSILA-----VGDITEIIP--------------DEEADIAVLEEP 170 (562)
Q Consensus 114 ~~~~~~~~~~~~~~~~~---~~i~~y~~r-~~~~~~~~~~-----~~~l~~~i~--------------~~~pDvV~~~~~ 170 (562)
++.. ......++ .++++-|.. +.. .....+ ...+.+.+. ...|||||.|..
T Consensus 246 ~~~~-----~~~~~~~g~rIvRip~GP~~~~l~-Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw 319 (1050)
T TIGR02468 246 ENDG-----DEMGESSGAYIIRIPFGPRDKYIP-KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYA 319 (1050)
T ss_pred cccc-----ccccCCCCeEEEEeccCCCCCCcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcc
Confidence 0000 00000011 222332221 110 111111 111222221 124999999976
Q ss_pred chhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhh-hhchH-----HH--HHHHHH--HHHHHHHHhccEEEEcChhhhc-
Q 008544 171 EHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR-EKNDR-----LQ--AFLLEF--VNSWLARVHCHKVIRLSAATQE- 238 (562)
Q Consensus 171 ~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~-~~~~~-----~~--~~~~~~--~~~~~~~~~ad~vi~~S~~~~~- 238 (562)
... +. +..+...++ |.|.+.|+.-...... ...+. +. ..+... ...+... .||.||+.|...++
T Consensus 320 ~sG-~a--a~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~-~Ad~VIasT~qE~~e 395 (1050)
T TIGR02468 320 DAG-DS--AALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLD-ASEIVITSTRQEIEE 395 (1050)
T ss_pred hHH-HH--HHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHH-hcCEEEEeCHHHHHH
Confidence 544 23 455666666 9999999753222110 00010 00 001111 1223333 38999999966665
Q ss_pred ----c---C----------------------CCccccccccCCCCcCcchhhhH--------------------HhhcCC
Q 008544 239 ----Y---P----------------------NSIVCNVHGVNPKFLEIGEKKME--------------------QQQNGN 269 (562)
Q Consensus 239 ----~---~----------------------~~~~~~v~GVd~~~~~~~~~~~~--------------------~~~~~~ 269 (562)
| . .+..++.+|||++.|.|...... ......
T Consensus 396 q~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~ 475 (1050)
T TIGR02468 396 QWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFT 475 (1050)
T ss_pred HHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhcc
Confidence 1 1 02233446999987766321110 011223
Q ss_pred CCCccEEEEEeeccccCCHHHHHHHHHHHHHh--cCCcEEEEEeCCCCH-----------HHHHHHHHhcCCeeEE-eCC
Q 008544 270 KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE--LAGLEMDLYGNGEDF-----------DQIQRAAKKLKLVVRV-YPG 335 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~--~~~~~l~ivG~g~~~-----------~~l~~~~~~l~l~~~~-~~~ 335 (562)
.++.++|+|+||+.++||++.||+|+..+.+. .+++. +|+|.|++. ..++++++++++..++ |.+
T Consensus 476 ~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG 554 (1050)
T TIGR02468 476 NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPK 554 (1050)
T ss_pred cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecC
Confidence 45678999999999999999999999998753 34565 466876542 4567788888876444 433
Q ss_pred ---CCChHHHHhhc----CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHH
Q 008544 336 ---RDHADPIFHDY----KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKA 405 (562)
Q Consensus 336 ---~~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~l 405 (562)
.+++.++|+.| |+||+||.+|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++|+++|.++
T Consensus 555 ~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~L 634 (1050)
T TIGR02468 555 HHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKL 634 (1050)
T ss_pred CCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHH
Confidence 45667899887 699999999999999999999999999999998 99999999999985 999999999999
Q ss_pred HhCCCC--CccHHHH---hcCCHHHHHHHHHHHHHhcCccc
Q 008544 406 LAEEPA--QPTDAQT---HQLSWESATERFLQVAELVGDVV 441 (562)
Q Consensus 406 l~~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~~~~~~~ 441 (562)
++|+.. +|+++++ ++|+|+.+++++++.|+......
T Consensus 635 L~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 635 VADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred hhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccC
Confidence 999875 7888776 77999999999999998776443
No 21
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=2.2e-31 Score=275.25 Aligned_cols=353 Identities=22% Similarity=0.250 Sum_probs=244.6
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.|+|..+|.+.....++++|.++| |+|+++++............ . . . . .....
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~~~~~~-~----~-~-------~---~~~~~--- 60 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG-HEVYVVAPSYPGAPEEEEVV-V----V-R-------P---FRVPT--- 60 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC-CeEEEEeCCCCCCCcccccc-c----c-c-------c---ccccc---
Confidence 6999999999999999999999999999998 99999988432111100000 0 0 0 0 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
..+. +. .........+...+++.+||+||++.+...... +..++++.+ |++.++|+.+..+.........
T Consensus 61 ---~~~~-~~---~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 131 (374)
T cd03817 61 ---FKYP-DF---RLPLPIPRALIIILKELGPDIVHTHTPFSLGLL--GLRVARKLGIPVVATYHTMYEDYTHYVPLGRL 131 (374)
T ss_pred ---chhh-hh---hccccHHHHHHHHHhhcCCCEEEECCchhhhhH--HHHHHHHcCCCEEEEecCCHHHHHHHHhcccc
Confidence 0000 00 000001223455677889999999988665433 344555555 8999999887655443322111
Q ss_pred -HHHHHH-HHHHHHHHHhccEEEEcChhhhccCC------CccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 210 -QAFLLE-FVNSWLARVHCHKVIRLSAATQEYPN------SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 210 -~~~~~~-~~~~~~~~~~ad~vi~~S~~~~~~~~------~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
...... .+.+.... .+|.+++.|+..++... +.....+|+|...+.+..........+...+.+.++|+|+
T Consensus 132 ~~~~~~~~~~~~~~~~-~~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 210 (374)
T cd03817 132 LARAVVRRKLSRRFYN-RCDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGR 210 (374)
T ss_pred hhHHHHHHHHHHHHhh-hCCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEee
Confidence 111111 22233333 37999999988776322 1123335888877665443333334455556788999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
+.+.||++.+++++..+.++.++++++++|.|+..+.+++.++++++. +.+++.. ++..++|+.||++++||..|+
T Consensus 211 ~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~ 290 (374)
T cd03817 211 LAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTET 290 (374)
T ss_pred eecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccC
Confidence 999999999999999998888899999999999888899888877765 4445543 455699999999999999999
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERF 430 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~ 430 (562)
+|++++|||+||+|||+++.++ .+++.++.+|++++ +.++++++|.++++++.. .|+++++ ++++ ..+++
T Consensus 291 ~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 367 (374)
T cd03817 291 QGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKV 367 (374)
T ss_pred cChHHHHHHHcCCcEEEeCCCChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 9999999999999999999998 99999999999985 222999999999999886 7777776 3333 55566
Q ss_pred HHHHHh
Q 008544 431 LQVAEL 436 (562)
Q Consensus 431 ~~~y~~ 436 (562)
.++|+.
T Consensus 368 ~~~~~~ 373 (374)
T cd03817 368 EKLYEE 373 (374)
T ss_pred HHHHhc
Confidence 666653
No 22
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=2.5e-31 Score=279.48 Aligned_cols=348 Identities=16% Similarity=0.146 Sum_probs=230.8
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC---CC-ceeCCchhhHHHHHHHhhhcc
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP---GN-ITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p---~~-i~~~~~~~~~~~~~~~~~~~~ 125 (562)
|||++++..+. .||.+..+..+++.|.++| |+|+++|+.... ...+. ++ +.+. .
T Consensus 1 mkIl~~~~~~~--~gG~e~~~~~la~~L~~~G-~~V~v~~~~~~~---~~~~~~~~~~~~~i~----------------~ 58 (392)
T cd03805 1 LRVAFIHPDLG--IGGAERLVVDAALALQSRG-HEVTIYTSHHDP---SHCFEETKDGTLPVR----------------V 58 (392)
T ss_pred CeEEEECCCCC--CchHHHHHHHHHHHHHhCC-CeEEEEcCCCCc---hhcchhccCCeeEEE----------------E
Confidence 68999987653 5888889999999999998 999999873210 00010 00 0000 0
Q ss_pred CCCCCcccccccccc---hhccchhhhHHhHH-hhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHH
Q 008544 126 GFTSTFDTRFYPGKF---AADKKSILAVGDIT-EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYV 201 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~---~~~~~~~~~~~~l~-~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~ 201 (562)
. .......+..++ ....+. ....+. ..+...++|+||++......++ .....+ .+++++.|.......
T Consensus 59 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~~~~~~-~~~i~~~h~~~~~~~ 130 (392)
T cd03805 59 R--GDWLPRSIFGRFHILCAYLRM--LYLALYLLLLPDEKYDVFIVDQVSACVPL---LKLFSP-SKILFYCHFPDQLLA 130 (392)
T ss_pred E--eEEEcchhhHhHHHHHHHHHH--HHHHHHHHhcccCCCCEEEEcCcchHHHH---HHHhcC-CcEEEEEecChHHhc
Confidence 0 000000000000 000000 000011 1356678999999875443111 112222 578888884322111
Q ss_pred hhhhchHHH---HHHHHHHHHHHHHHhccEEEEcChhhhccCC--------Ccc-ccccccCCCCcCcchhhhHHhhcCC
Q 008544 202 KREKNDRLQ---AFLLEFVNSWLARVHCHKVIRLSAATQEYPN--------SIV-CNVHGVNPKFLEIGEKKMEQQQNGN 269 (562)
Q Consensus 202 ~~~~~~~~~---~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~--------~~~-~~v~GVd~~~~~~~~~~~~~~~~~~ 269 (562)
. ..+... ......+.++..+. +|.++++|+..++... +.. +..+|+|.+.+.+............
T Consensus 131 ~--~~~~~~~~~~~~~~~~e~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~ 207 (392)
T cd03805 131 Q--RGSLLKRLYRKPFDWLEEFTTGM-ADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIP 207 (392)
T ss_pred C--CCcHHHHHHHHHHHHHHHHHhhC-ceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCccccccccccccc
Confidence 1 111111 11222333333443 8999999988877321 112 3346888876654332212222334
Q ss_pred CCCccEEEEEeeccccCCHHHHHHHHHHHHHhc---CCcEEEEEeCCCCH--------HHHHHHHHh-cCCe--eEEeCC
Q 008544 270 KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL---AGLEMDLYGNGEDF--------DQIQRAAKK-LKLV--VRVYPG 335 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~---~~~~l~ivG~g~~~--------~~l~~~~~~-l~l~--~~~~~~ 335 (562)
.++.++++++|++.+.||++.+++++.++.++. |+++|+++|+|+.. +++++.+++ ++++ +.+.+.
T Consensus 208 ~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~ 287 (392)
T cd03805 208 KSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS 287 (392)
T ss_pred CCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 456788999999999999999999999998887 89999999998652 678888888 7765 455566
Q ss_pred CCCh--HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC
Q 008544 336 RDHA--DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 336 ~~~~--~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~ 411 (562)
..+. .++|+.+|++++||..|+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.++++++..
T Consensus 288 ~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~ 367 (392)
T cd03805 288 ISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDL 367 (392)
T ss_pred CChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHH
Confidence 5444 3899999999999999999999999999999999999998 89999999999875 999999999999999865
Q ss_pred --CccHHHH----hcCCHHHHHHHH
Q 008544 412 --QPTDAQT----HQLSWESATERF 430 (562)
Q Consensus 412 --~l~~~ar----~~~sw~~~~~~~ 430 (562)
+|+++++ ++|+|+.+++++
T Consensus 368 ~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 368 ADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 7877776 789999998764
No 23
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=4.1e-31 Score=271.17 Aligned_cols=320 Identities=16% Similarity=0.076 Sum_probs=227.9
Q ss_pred CeEEEEecccCC----CcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhcc
Q 008544 50 QHIAIFTTASLP----WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 50 ~rI~ivt~~~~P----~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
|||+++++.+.| ..||.+..+..++++|.++| |+|+++++......... .+ ..+. .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~~~~~-~~-----~~~~-------------~ 60 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG-HEVTLFASGDSKTAAPL-VP-----VVPE-------------P 60 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC-ceEEEEecCCCCcccce-ee-----ccCC-------------C
Confidence 699999998844 88998899999999999998 99999998432111000 00 0000 0
Q ss_pred CCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh
Q 008544 126 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE 204 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~ 204 (562)
.. ... . ............+.+.+++.+|||||++......+ +.+..+ |++.++|+........
T Consensus 61 ~~-----~~~-~---~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~~~~~~- 124 (335)
T cd03802 61 LR-----LDA-P---GRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPDPELLK- 124 (335)
T ss_pred cc-----ccc-c---hhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCCcccch-
Confidence 00 000 0 00011112234467788889999999998776622 222223 8999999765432210
Q ss_pred hchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCC--cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 205 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS--IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~--~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
..... ...+.++++|+..++.... .+ +..+|+|.+.|.+. +.....++|+|+
T Consensus 125 ------------~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~-----------~~~~~~i~~~Gr 179 (335)
T cd03802 125 ------------LYYAA--RPDVPFVSISDAQRRPWPPLPWVATVHNGIDLDDYPFR-----------GPKGDYLLFLGR 179 (335)
T ss_pred ------------HHHhh--CcCCeEEEecHHHHhhcccccccEEecCCcChhhCCCC-----------CCCCCEEEEEEe
Confidence 11111 2358899999888885433 22 33468988777641 122567999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhc---CCeeEEeCCCCCh--HHHHhhcCEEEEccC-C
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKL---KLVVRVYPGRDHA--DPIFHDYKVFLNPST-T 355 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l---~l~~~~~~~~~~~--~~l~~~adv~v~pS~-~ 355 (562)
+.+.||++.+++++.+ .+++|+++|.|++.+.+....... +.++.+.|..++. .++|+.+|++++||. .
T Consensus 180 ~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~ 254 (335)
T cd03802 180 ISPEKGPHLAIRAARR-----AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWE 254 (335)
T ss_pred eccccCHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccc
Confidence 9999999999998743 479999999998776666655544 3456677765543 489999999999997 6
Q ss_pred CCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHH
Q 008544 356 DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVA 434 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y 434 (562)
|+||++++||||||+|||+++.++ .|++.++.+|++++++++++++|.++++.+.....+.+.++|+|+.++++++++|
T Consensus 255 E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 255 EPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALY 334 (335)
T ss_pred CCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999999999999999998 9999999999999889999999999876543333334449999999999999998
Q ss_pred H
Q 008544 435 E 435 (562)
Q Consensus 435 ~ 435 (562)
+
T Consensus 335 ~ 335 (335)
T cd03802 335 R 335 (335)
T ss_pred C
Confidence 5
No 24
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=5.8e-31 Score=288.56 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=203.2
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEE-EEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVG-IVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 227 (562)
...+.+++++.+|||||+|..... ++ +...++..+ |+|. +.|+...... ...+ ......+...+....++
T Consensus 389 ~~~L~~~lk~~kpDIVH~h~~~a~-~l--g~lAa~~~gvPvIv~t~h~~~~~~~----~~~~-~~~~~~l~~~l~~~~~~ 460 (694)
T PRK15179 389 TTKLTDVMRSSVPSVVHIWQDGSI-FA--CALAALLAGVPRIVLSVRTMPPVDR----PDRY-RVEYDIIYSELLKMRGV 460 (694)
T ss_pred HHHHHHHHHHcCCcEEEEeCCcHH-HH--HHHHHHHcCCCEEEEEeCCCccccc----hhHH-HHHHHHHHHHHHhcCCe
Confidence 456888899999999999987664 22 222333333 6554 5665422111 0111 11122222333333345
Q ss_pred EEEEcChhhhc-------cCCCccc-cccccCCCCcCcchhhhH-Hh--hcCCCCCccEEEEEeeccccCCHHHHHHHHH
Q 008544 228 KVIRLSAATQE-------YPNSIVC-NVHGVNPKFLEIGEKKME-QQ--QNGNKAFTKGAYYIGRMVWSKGYEELLGLLN 296 (562)
Q Consensus 228 ~vi~~S~~~~~-------~~~~~~~-~v~GVd~~~~~~~~~~~~-~~--~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~ 296 (562)
.+++.|+..++ .+.+++. ..||||...|.+...... .. ....+++.++|+++||+.+.||++.+++|+.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 66777765543 2223343 347999876654222111 11 1223445678999999999999999999999
Q ss_pred HHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEe
Q 008544 297 IYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 297 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
++.++.|+++|+|+|+|+..+.+++.++++++. +.|.+..+++..+|+.+|+||+||.+|+||++++|||+||+|||+
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 998889999999999999999999999999876 445566778889999999999999999999999999999999999
Q ss_pred eCCCC-ccccccCCceEeeC--C--HHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 375 ANHPS-NDFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 375 t~~~~-~e~v~~~~~g~~~~--d--~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
|+.++ .|++.++.+|++++ | +++++++|.+++.+... .++++++ ++|||+.++++++++|++
T Consensus 621 t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 621 TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 99998 99999999999984 4 56899999998876543 5666665 789999999999999975
No 25
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=4e-31 Score=279.67 Aligned_cols=360 Identities=13% Similarity=0.095 Sum_probs=230.3
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
.+||+++++.. .|.+.++..+++.|+++| |+|+|++...........-.+++.+.. ....
T Consensus 3 ~~~~~~~~~~~----~~~~~R~~~~a~~L~~~G-~~V~ii~~~~~~~~~~~~~~~~v~~~~---------------~~~~ 62 (415)
T cd03816 3 RKRVCVLVLGD----IGRSPRMQYHALSLAKHG-WKVDLVGYLETPPHDEILSNPNITIHP---------------LPPP 62 (415)
T ss_pred ccEEEEEEecc----cCCCHHHHHHHHHHHhcC-ceEEEEEecCCCCCHHHhcCCCEEEEE---------------CCCC
Confidence 37899998853 566889999999999998 999999872210000000001111110 0000
Q ss_pred CCcccccccccchhccchhhh-HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh-h
Q 008544 129 STFDTRFYPGKFAADKKSILA-VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE-K 205 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~-~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~-~ 205 (562)
+ ......+............ +.-+..+++..+||+||++++........+..+++..+ |+|.++|+.+....... +
T Consensus 63 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~ 141 (415)
T cd03816 63 P-QRLNKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLG 141 (415)
T ss_pred c-cccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccC
Confidence 0 0000000000000000000 11123345667899999998655422111222333334 88999997543222111 1
Q ss_pred chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCccccc-cccCCCCcCcchhhhHHhh------------
Q 008544 206 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNV-HGVNPKFLEIGEKKMEQQQ------------ 266 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~v-~GVd~~~~~~~~~~~~~~~------------ 266 (562)
.......+...+.+++.+. ||.+|++|+.+++.. .+.+..+ +|. ...|.+.........
T Consensus 142 ~~~~~~~~~~~~e~~~~~~-ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~ 219 (415)
T cd03816 142 ENHPLVRLAKWYEKLFGRL-ADYNLCVTKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRE 219 (415)
T ss_pred CCCHHHHHHHHHHHHHhhc-CCEeeecCHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhccccccccc
Confidence 1111223555556666665 899999999888732 2333333 453 333333221111110
Q ss_pred -----cCC-CCCccEEEEEeeccccCCHHHHHHHHHHHHHh------cCCcEEEEEeCCCCHHHHHHHHHhcCCeeE-Ee
Q 008544 267 -----NGN-KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE------LAGLEMDLYGNGEDFDQIQRAAKKLKLVVR-VY 333 (562)
Q Consensus 267 -----~~~-~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~-~~ 333 (562)
.+. ++...+++++||+.+.||++.+++|+..+.+. .|+++|+|+|+|+..+++++.+++++++.. ++
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~ 299 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIR 299 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEE
Confidence 011 23345788899999999999999999998752 478999999999999999999999988644 45
Q ss_pred CC---CCChHHHHhhcCEEEEcc---CCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHH
Q 008544 334 PG---RDHADPIFHDYKVFLNPS---TTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKAL 406 (562)
Q Consensus 334 ~~---~~~~~~l~~~adv~v~pS---~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll 406 (562)
++ .++..++|+.+|+++.|+ ..|++|++++||||||+|||+++.++ .|++.++.+|++++|+++++++|.+++
T Consensus 300 ~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll 379 (415)
T cd03816 300 TPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLL 379 (415)
T ss_pred cCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHH
Confidence 54 356669999999999753 35789999999999999999999987 999999999999999999999999999
Q ss_pred hC---CCC--CccHHHH--hcCCHHHHHHHHH
Q 008544 407 AE---EPA--QPTDAQT--HQLSWESATERFL 431 (562)
Q Consensus 407 ~~---~~~--~l~~~ar--~~~sw~~~~~~~~ 431 (562)
+| ++. +|+++++ .+++|+...++.+
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 411 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEESELRWDENWDRVV 411 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhhhcCHHHHHHHHh
Confidence 99 554 8888887 7788888776654
No 26
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=1.3e-31 Score=287.39 Aligned_cols=381 Identities=14% Similarity=0.116 Sum_probs=239.8
Q ss_pred cCCeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc-cCC-----Cce--eCCchh-h---
Q 008544 48 KQQHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPG-----NIT--FASPKE-Q--- 113 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~-~p~-----~i~--~~~~~~-~--- 113 (562)
+.|||++|+.-..|+ .||-+-.+-.|.++|+++| |+|.|+.|.+........ .+. .+. +..... .
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g-~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEG-FEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVK 82 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCC-CeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEE
Confidence 348999999888887 5777777888999999998 999999998755322100 000 000 000000 0
Q ss_pred HH-----HHHHHhhhccCCCCCcccccccc-----cc-hhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchH
Q 008544 114 EA-----YVRWWLEDRTGFTSTFDTRFYPG-----KF-AADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGK 180 (562)
Q Consensus 114 ~~-----~~~~~~~~~~~~~~~~~i~~y~~-----r~-~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~ 180 (562)
.. .+..++-..-.++..- ..|.. -| ....+..+-.....++++ ..+|||||+|+.... +. +.
T Consensus 83 ~~~~~~~~v~~~~~~~~~~f~r~--~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~-l~--~~ 157 (489)
T PRK14098 83 VTALPSSKIQTYFLYNEKYFKRN--GLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAG-LV--PL 157 (489)
T ss_pred EecccCCCceEEEEeCHHHcCCC--CcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHH-HH--HH
Confidence 00 0000000000000000 01100 00 011111111112223333 358999999985443 33 22
Q ss_pred HHHhhc--------CCEEEEEcCCcHHHHh----hhh-c-hHHHHHH------HHHHHHHHHHHhccEEEEcChhhhccC
Q 008544 181 RWKAKF--------RFVVGIVHTNYLEYVK----REK-N-DRLQAFL------LEFVNSWLARVHCHKVIRLSAATQEYP 240 (562)
Q Consensus 181 ~~~~~~--------~~vi~~~h~~~~~~~~----~~~-~-~~~~~~~------~~~~~~~~~~~~ad~vi~~S~~~~~~~ 240 (562)
.+..+. .|.|.++|+...+... ... . ....... ...+..-+. +||.|+++|+..++..
T Consensus 158 ~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~--~ad~VitVS~~~a~ei 235 (489)
T PRK14098 158 LLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVE--HADLLTTTSPRYAEEI 235 (489)
T ss_pred HHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHH--hcCcceeeCHHHHHHh
Confidence 222221 3899999975321100 000 0 0000000 001111111 4899999998777521
Q ss_pred C------------------CccccccccCCCCcCcchhh-------------------hHHhhcCCC--CCccEEEEEee
Q 008544 241 N------------------SIVCNVHGVNPKFLEIGEKK-------------------MEQQQNGNK--AFTKGAYYIGR 281 (562)
Q Consensus 241 ~------------------~~~~~v~GVd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~il~vGr 281 (562)
. +...+.||||.+.|.|.... ...+..+++ ++.++++++||
T Consensus 236 ~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~~vgR 315 (489)
T PRK14098 236 AGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVGVIIN 315 (489)
T ss_pred CcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEEEecc
Confidence 1 12234579999877764321 122334544 35689999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCCC
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E~ 357 (562)
+.++||++.+++|+.++.+. +++|+|+|+|+. .+.+++++++++.++.+.++.++. ..+|+.+|+|++||..|+
T Consensus 316 l~~~KG~d~li~a~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~ 393 (489)
T PRK14098 316 FDDFQGAELLAESLEKLVEL--DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIES 393 (489)
T ss_pred ccccCcHHHHHHHHHHHHhc--CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCC
Confidence 99999999999999998753 799999999875 478888888887667777776554 489999999999999999
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-cccccc----CCceEeeC--CHHHHHHHHHHHH---hCCCC--CccHHHH-hcCCHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQ----FPNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQLSWE 424 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~----~~~g~~~~--d~~~la~~i~~ll---~~~~~--~l~~~ar-~~~sw~ 424 (562)
||++.+|||+||+|+|+++.|| .|.+.+ +.+|++++ |+++++++|.+++ ++++. .+++++. +.|||+
T Consensus 394 ~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~~~~fsw~ 473 (489)
T PRK14098 394 CGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAMERDFSWK 473 (489)
T ss_pred chHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999988 777753 67999974 9999999999876 34433 5555554 889999
Q ss_pred HHHHHHHHHHHhcC
Q 008544 425 SATERFLQVAELVG 438 (562)
Q Consensus 425 ~~~~~~~~~y~~~~ 438 (562)
.++++++++|+...
T Consensus 474 ~~a~~y~~lY~~~~ 487 (489)
T PRK14098 474 NSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 27
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=6.5e-31 Score=283.69 Aligned_cols=367 Identities=16% Similarity=0.151 Sum_probs=236.8
Q ss_pred eEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc-cC------------------------C
Q 008544 51 HIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YP------------------------G 103 (562)
Q Consensus 51 rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~-~p------------------------~ 103 (562)
||++||.-+.|+ .||.+..+..|+++|++.| |+|+|++|.+........ .. +
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G-~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLG-HDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCC-CeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeC
Confidence 699999887776 7999999999999999998 999999996643211100 00 0
Q ss_pred CceeCCchhhHHHHHHHhhhccCCCCCcccccccccchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHH
Q 008544 104 NITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKR 181 (562)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~ 181 (562)
++.+.-.+... +. .+.... ......|... ..+..+-.....+++. ..+|||||+|+.... +. +..
T Consensus 80 gv~~~~l~~~~-----~~-~~~~~~-~~~~~~~~~~---~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~--~~~ 146 (476)
T cd03791 80 GVPVYFLDNPD-----YF-DRPGLY-DDSGYDYEDN---AERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LV--PAL 146 (476)
T ss_pred CceEEEEcChH-----Hc-CCCCCC-CccCCCCccH---HHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HH--HHH
Confidence 11100000000 00 000000 0000000100 0000111111223333 378999999987654 22 222
Q ss_pred HHhh-------cCCEEEEEcCCcHHHHhhhhchHHHHH--------HH--------HHHHHHHHHHhccEEEEcChhhhc
Q 008544 182 WKAK-------FRFVVGIVHTNYLEYVKREKNDRLQAF--------LL--------EFVNSWLARVHCHKVIRLSAATQE 238 (562)
Q Consensus 182 ~~~~-------~~~vi~~~h~~~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~~~~ad~vi~~S~~~~~ 238 (562)
++.. ..|+|.++|+...... .....+... .. ..+.+...+ +||.++++|+..++
T Consensus 147 l~~~~~~~~~~~~~~v~tiH~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~v~~vS~~~~~ 223 (476)
T cd03791 147 LKEKYADPFFKNIKTVFTIHNLAYQGV--FPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIV-YADAVTTVSPTYAR 223 (476)
T ss_pred HHHhhccccCCCCCEEEEeCCCCCCCC--CCHHHHHHcCCCccchhhhcccccCCcccHHHHHHH-hcCcCeecCHhHHH
Confidence 3333 2389999997532110 000000000 00 011111222 38999999977665
Q ss_pred cCC-----------------CccccccccCCCCcCcchhh-------------------hHHhhcCCC--CCccEEEEEe
Q 008544 239 YPN-----------------SIVCNVHGVNPKFLEIGEKK-------------------MEQQQNGNK--AFTKGAYYIG 280 (562)
Q Consensus 239 ~~~-----------------~~~~~v~GVd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~il~vG 280 (562)
... +.....||||.+.+.+.... ..++..+++ ++.++++|+|
T Consensus 224 ~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vG 303 (476)
T cd03791 224 EILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVG 303 (476)
T ss_pred HhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEe
Confidence 221 22344579999877654322 123345553 6688999999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCC
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E 356 (562)
|+.++||++.+++++.++.++ +++|+++|.|+. .+.++++++++..++.++++.++. ..+|+.+|++++||..|
T Consensus 304 rl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E 381 (476)
T cd03791 304 RLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFLMPSRFE 381 (476)
T ss_pred eccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEECCCCCC
Confidence 999999999999999998765 499999999864 366777777665556666665533 37899999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCC------ceEeeC--CHHHHHHHHHHHHhCCC---C--CccHHHH-hcC
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFP------NCRTYD--GRNGFVEATLKALAEEP---A--QPTDAQT-HQL 421 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~------~g~~~~--d~~~la~~i~~ll~~~~---~--~l~~~ar-~~~ 421 (562)
+||++++|||+||+|||+++.|+ .|++.++. +|++++ |+++++++|.++++... . +|++++. +.|
T Consensus 382 ~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~f 461 (476)
T cd03791 382 PCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDF 461 (476)
T ss_pred CCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCC
Confidence 99999999999999999999998 99999887 999984 89999999999886432 2 5666665 789
Q ss_pred CHHHHHHHHHHHHHh
Q 008544 422 SWESATERFLQVAEL 436 (562)
Q Consensus 422 sw~~~~~~~~~~y~~ 436 (562)
+|+.++++++++|+.
T Consensus 462 sw~~~a~~~~~~y~~ 476 (476)
T cd03791 462 SWDRSAKEYLELYRS 476 (476)
T ss_pred ChHHHHHHHHHHHhC
Confidence 999999999999963
No 28
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.1e-30 Score=273.25 Aligned_cols=254 Identities=17% Similarity=0.216 Sum_probs=198.2
Q ss_pred CcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChh
Q 008544 158 PDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAA 235 (562)
Q Consensus 158 ~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 235 (562)
...++||||+|+...+ + ..+..+.. +.+.++|..+... .+.+ ++.++++|+.
T Consensus 96 ~~~~~~vi~v~~~~~~--~---~~~~~~~~~~~~v~~~h~~~~~~-------------------~~~~--~~~ii~~S~~ 149 (380)
T PRK15484 96 TITKDSVIVIHNSMKL--Y---RQIRERAPQAKLVMHMHNAFEPE-------------------LLDK--NAKIIVPSQF 149 (380)
T ss_pred CCCCCcEEEEeCcHHh--H---HHHHhhCCCCCEEEEEecccChh-------------------Hhcc--CCEEEEcCHH
Confidence 3467999999986544 2 22334333 7888899553211 0112 5999999988
Q ss_pred hhccC-----CCccc-cccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE
Q 008544 236 TQEYP-----NSIVC-NVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL 309 (562)
Q Consensus 236 ~~~~~-----~~~~~-~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i 309 (562)
.++.. ...+. ..+|+|.+.|.+......+...+.+.+.++++|+||+.+.||++.+++|+.++.++.|+++|+|
T Consensus 150 ~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvi 229 (380)
T PRK15484 150 LKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVV 229 (380)
T ss_pred HHHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEE
Confidence 88742 22333 3379998777654444344556666667889999999999999999999999998899999999
Q ss_pred EeCCCC---------HHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCC
Q 008544 310 YGNGED---------FDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 310 vG~g~~---------~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+|+|+. .+.+++.+++++.++.+.+.. ++..++|+.+|++|+||. .|+||++++||||||+|||+|+.
T Consensus 230 vG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~ 309 (380)
T PRK15484 230 VGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTK 309 (380)
T ss_pred EeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCC
Confidence 998753 135666777777777776664 356699999999999997 59999999999999999999999
Q ss_pred CC-ccccccCCceEe-e--CCHHHHHHHHHHHHhCCCC-CccHHHH----hcCCHHHHHHHHHHHHHhc
Q 008544 378 PS-NDFFKQFPNCRT-Y--DGRNGFVEATLKALAEEPA-QPTDAQT----HQLSWESATERFLQVAELV 437 (562)
Q Consensus 378 ~~-~e~v~~~~~g~~-~--~d~~~la~~i~~ll~~~~~-~l~~~ar----~~~sw~~~~~~~~~~y~~~ 437 (562)
|+ .|++.++.+|++ + .|+++++++|.++++|++. +|+++++ ++|+|+.++++++++|+..
T Consensus 310 gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 310 GGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred CCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 98 999999999984 3 3999999999999998875 7777776 7899999999999999753
No 29
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.98 E-value=1.3e-30 Score=274.62 Aligned_cols=350 Identities=13% Similarity=0.040 Sum_probs=219.2
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++|...|++. ...+++.|.++| |+|+++|...... .+.+++...... .....
T Consensus 1 ~il~~~~~~p~~-------~~~la~~L~~~G-~~v~~~~~~~~~~-----~~~~v~~~~~~~-------------~~~~~ 54 (396)
T cd03818 1 RILFVHQNFPGQ-------FRHLAPALAAQG-HEVVFLTEPNAAP-----PPGGVRVVRYRP-------------PRGPT 54 (396)
T ss_pred CEEEECCCCchh-------HHHHHHHHHHCC-CEEEEEecCCCCC-----CCCCeeEEEecC-------------CCCCC
Confidence 689998888543 345999999997 9999998833211 111111110000 00000
Q ss_pred cccccccccchhccchhhh-HHhHHhh-cCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHH------H
Q 008544 131 FDTRFYPGKFAADKKSILA-VGDITEI-IPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLE------Y 200 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~-~~~l~~~-i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~------~ 200 (562)
.....|...+......... ...+..+ .+..+||+||+|.......+ +...+. |++.+.|..+.. +
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~-----l~~~~~~~~~v~~~~~~~~~~~~~~~~ 129 (396)
T cd03818 55 SGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLF-----LKDVWPDAPLIGYFEFYYRAEGADVGF 129 (396)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhh-----HHHhCCCCCEEEEEeeeecCCCCCCCC
Confidence 0011111111111111111 1122222 34568999999976544323 333333 677665422211 1
Q ss_pred HhhhhchHH-HHHHHHHH--HHHHHHHhccEEEEcChhhhccCC----Ccc-ccccccCCCCcCcchhhhHHh--hcCCC
Q 008544 201 VKREKNDRL-QAFLLEFV--NSWLARVHCHKVIRLSAATQEYPN----SIV-CNVHGVNPKFLEIGEKKMEQQ--QNGNK 270 (562)
Q Consensus 201 ~~~~~~~~~-~~~~~~~~--~~~~~~~~ad~vi~~S~~~~~~~~----~~~-~~v~GVd~~~~~~~~~~~~~~--~~~~~ 270 (562)
......... ..++.... .....+ .+|.+|++|+..++... +.+ +..+|+|.+.|.+........ ...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~ 208 (396)
T cd03818 130 DPEFPPSLDDALRLRNRNALILLALA-QADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLT 208 (396)
T ss_pred CCCCCCchhHHHHHHHhhhHhHHHHH-hCCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCC
Confidence 100001100 01111110 111222 38999999998888432 233 334699998887654322111 12234
Q ss_pred CCccEEEEEee-ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC---------HHHHHHHHHhcC----C-eeEEeCC
Q 008544 271 AFTKGAYYIGR-MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED---------FDQIQRAAKKLK----L-VVRVYPG 335 (562)
Q Consensus 271 ~~~~~il~vGr-~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~---------~~~l~~~~~~l~----l-~~~~~~~ 335 (562)
++.++++|+|| +.+.||++.+++|+..+.++.|+++|+|+|++.. ....++..++++ . ++.+.+.
T Consensus 209 ~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~ 288 (396)
T cd03818 209 PGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR 288 (396)
T ss_pred CCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC
Confidence 55778999997 9999999999999999998899999999997421 112222233322 2 3555565
Q ss_pred CC--ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 336 RD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 336 ~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.+ +..++|+.+|++++||..|++|++++||||||+|||+|+.++ .|++.++.+|++++ |+++++++|.++++|++
T Consensus 289 v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 289 VPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPA 368 (396)
T ss_pred CCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 43 445899999999999999999999999999999999999998 99999999999974 99999999999999987
Q ss_pred C--CccHHHH----hcCCHHHHHHHHHH
Q 008544 411 A--QPTDAQT----HQLSWESATERFLQ 432 (562)
Q Consensus 411 ~--~l~~~ar----~~~sw~~~~~~~~~ 432 (562)
. +|+++++ ++|+|+.+++++++
T Consensus 369 ~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 369 RRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 5 7888777 66999999998863
No 30
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.98 E-value=3.7e-30 Score=264.34 Aligned_cols=352 Identities=19% Similarity=0.145 Sum_probs=248.9
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++++..++|..+|.+.....++++|.+.| |+|+++++............ .. .. ...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~i~~~~~~~~~~~~~~~-----~~-~~------------~~~--- 58 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARG-HEVTVLTPGDGGLPDEEEVG-----GI-VV------------VRP--- 58 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcC-ceEEEEecCCCCCCceeeec-----Cc-ce------------ecC---
Confidence 6999999998877888999999999999987 99999988432111100000 00 00 000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
..................+.+.+++.+||+||++.+....... ......+ |++.++|+.+....... ...
T Consensus 59 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~~~i~~~h~~~~~~~~~~--~~~ 129 (374)
T cd03801 59 ----PPLLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGIPLVLTVHGLEFGRPGNE--LGL 129 (374)
T ss_pred ----CcccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCCcEEEEeccchhhccccc--hhH
Confidence 0000000001111123346677788899999999987774431 2333333 89999997755432211 111
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccCCC-------cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS-------IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-------~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
.............+. +|.+++.|+..++...+ .+ ...+|++...+.+.. ...........+.+.++|+|+
T Consensus 130 ~~~~~~~~~~~~~~~-~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~ 207 (374)
T cd03801 130 LLKLARALERRALRR-ADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGR 207 (374)
T ss_pred HHHHHHHHHHHHHHh-CCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecc
Confidence 222333333333333 79999999888773221 22 223588877665432 222223344455788999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
+.+.||++.+++++..+.++.++++|+++|.++..+.+++.+++++.. +.+.+.. ++..++|+.||++++||..|+
T Consensus 208 ~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~ 287 (374)
T cd03801 208 LVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEG 287 (374)
T ss_pred hhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhcc
Confidence 999999999999999998888899999999888888888887666654 4455555 677799999999999999999
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATE 428 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~ 428 (562)
+|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. .++++++ +.|+|+..++
T Consensus 288 ~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (374)
T cd03801 288 FGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAA 367 (374)
T ss_pred ccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999999887 89999899999985 689999999999998875 6666655 8999999999
Q ss_pred HHHHHHH
Q 008544 429 RFLQVAE 435 (562)
Q Consensus 429 ~~~~~y~ 435 (562)
++.++|+
T Consensus 368 ~~~~~~~ 374 (374)
T cd03801 368 RTEEVYY 374 (374)
T ss_pred HHHHhhC
Confidence 9999874
No 31
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.98 E-value=3.1e-30 Score=263.46 Aligned_cols=329 Identities=16% Similarity=0.143 Sum_probs=232.6
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC--CCceeCCchhhHHHHHHHhhhccCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP--GNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p--~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
||++++..+.| .||.+.....++++|.+.| |+|++++..... ...+. .++.+..... ..
T Consensus 1 kI~i~~~~~~~-~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~---~~~~~~~~~~~~~~~~~-------------~~- 61 (348)
T cd03820 1 KILFVIPSLGN-AGGAERVLSNLANALAEKG-HEVTIISLDKGE---PPFYELDPKIKVIDLGD-------------KR- 61 (348)
T ss_pred CeEEEeccccC-CCChHHHHHHHHHHHHhCC-CeEEEEecCCCC---CCccccCCccceeeccc-------------cc-
Confidence 68999988877 7888888999999999987 999999883321 01111 1111000000 00
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchH
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
.. ...........+.+++++.+||+||++.+....+. ..+..+..+++...|..+.......
T Consensus 62 --~~---------~~~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~---- 123 (348)
T cd03820 62 --DS---------KLLARFKKLRRLRKLLKNNKPDVVISFLTSLLTFL---ASLGLKIVKLIVSEHNSPDAYKKRL---- 123 (348)
T ss_pred --cc---------chhccccchHHHHHhhcccCCCEEEEcCchHHHHH---HHHhhccccEEEecCCCccchhhhh----
Confidence 00 00111112345778888899999999998733222 2222222378888887654332110
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhcc----CCCc-cccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeecc
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEY----PNSI-VCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMV 283 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~----~~~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~ 283 (562)
......+...+. +|.+++.|+..+.. .... ....+|++...+.+. .....+.++|+|++.
T Consensus 124 ----~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~----------~~~~~~~i~~~g~~~ 188 (348)
T cd03820 124 ----RRLLLRRLLYRR-ADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS----------SDLKSKRILAVGRLV 188 (348)
T ss_pred ----HHHHHHHHHHhc-CCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcccc----------CCCCCcEEEEEEeec
Confidence 111122333333 79999999888531 1122 222346665543321 223467899999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCee--EEeCCCCChHHHHhhcCEEEEccCCCCCcHH
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVV--RVYPGRDHADPIFHDYKVFLNPSTTDVVCTA 361 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~--~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~ 361 (562)
+.||++.+++++..+.+..|+++|+++|.+++.+.+++.+++.++.. .+.+..+++.++|+.||++++||..|++|++
T Consensus 189 ~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~ 268 (348)
T cd03820 189 PQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMV 268 (348)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHH
Confidence 99999999999999988889999999999999888888888887654 3455568888999999999999999999999
Q ss_pred HHHHHHcCCcEEeeCCCC--ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHH
Q 008544 362 TAEALAMGKIVVCANHPS--NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFL 431 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~~--~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~ 431 (562)
++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++|++. .|+++++ ++|+|+++++++.
T Consensus 269 ~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 269 LLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHcCCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 999999999999999764 66777777999885 889999999999998875 6777665 8999999998875
No 32
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.98 E-value=5.5e-30 Score=264.71 Aligned_cols=353 Identities=16% Similarity=0.083 Sum_probs=232.2
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++++..+.|..||.+..+..++++|.+.| |+|+++++........ ............. ..
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~--- 62 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLG-HEVTVATTDAGGDPLL-VALNGVPVKLFSI-------------NV--- 62 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcC-CcEEEEecCCCCccch-hhccCceeeeccc-------------ch---
Confidence 6999999998899999999999999999998 9999998733111000 0000000000000 00
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
... .... .................++|+||+++........ ...+.++.+ |++...|+....+.. ....+
T Consensus 63 --~~~-~~~~---~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~ 133 (375)
T cd03821 63 --AYG-LNLA---RYLFPPSLLAWLRLNIREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWAL--PHKAL 133 (375)
T ss_pred --hhh-hhhh---hhccChhHHHHHHHhCCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEcccccccccc--ccchh
Confidence 000 0000 0000001112223345689999999864442221 222333334 889999976544331 11111
Q ss_pred HHHHHHHH-HHHHHHHhccEEEEcChhhhcc-----CCCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeec
Q 008544 210 QAFLLEFV-NSWLARVHCHKVIRLSAATQEY-----PNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 210 ~~~~~~~~-~~~~~~~~ad~vi~~S~~~~~~-----~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
...+.... .....+ .++.+++.|...... +...+ ...+|+|.+.+.+......+...+.+.+.++++|+|++
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 212 (375)
T cd03821 134 KKRLAWFLFERRLLQ-AAAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRL 212 (375)
T ss_pred hhHHHHHHHHHHHHh-cCCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCc
Confidence 22222211 222222 378888888555442 22223 33468888766543322223344556668899999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCe--eEEeCCCC--ChHHHHhhcCEEEEccCCC
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLV--VRVYPGRD--HADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~--~~~~~~~~--~~~~l~~~adv~v~pS~~E 356 (562)
.+.||++.+++++..+.++.++++|+++|.++. ...++..++++++. +.+++..+ +..++|+.||++++||..|
T Consensus 213 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e 292 (375)
T cd03821 213 HPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSE 292 (375)
T ss_pred chhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccC
Confidence 999999999999999998889999999998654 34555555666664 44555555 5558999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATE 428 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~ 428 (562)
+||++++|||+||+|||+++.++ .+++.+ ..|++++ ++++++++|.++++++.. .++++++ ++|+|+.+++
T Consensus 293 ~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 371 (375)
T cd03821 293 NFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQ 371 (375)
T ss_pred CCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999988 888887 7788775 679999999999999854 6776665 8999999999
Q ss_pred HHHH
Q 008544 429 RFLQ 432 (562)
Q Consensus 429 ~~~~ 432 (562)
++++
T Consensus 372 ~~~~ 375 (375)
T cd03821 372 QLLE 375 (375)
T ss_pred HhhC
Confidence 8763
No 33
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.98 E-value=2.1e-30 Score=278.91 Aligned_cols=267 Identities=16% Similarity=0.164 Sum_probs=202.9
Q ss_pred CCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh------hchHHHHHHHHHH---HHHHHHHhccEE
Q 008544 160 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE------KNDRLQAFLLEFV---NSWLARVHCHKV 229 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~ad~v 229 (562)
.++|++|+|+....++. +..+++..+ |+|.+.|+.+....... ..+..+..+.+.+ .+...+ .||.|
T Consensus 172 ~~~dviH~~s~~~~g~~--~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ad~I 248 (475)
T cd03813 172 PKADVYHAVSTGYAGLL--GALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQ-AADRI 248 (475)
T ss_pred CCCCEEeccCcchHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 47899999987555444 344555545 89999998765321110 0122222232222 222333 38999
Q ss_pred EEcChhhhcc------CCCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhc
Q 008544 230 IRLSAATQEY------PNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 302 (562)
Q Consensus 230 i~~S~~~~~~------~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 302 (562)
+++|+..++. +.+++ +..||+|.+.|.+.... ...++.++|+|+||+.+.||++.+++|+..+.++.
T Consensus 249 i~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 249 TTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRA------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred EecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCcccc------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 9999887763 22223 33469988776543221 12344688999999999999999999999999889
Q ss_pred CCcEEEEEeCCCC----HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 303 AGLEMDLYGNGED----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 303 ~~~~l~ivG~g~~----~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
|+++|+|+|.|+. .++++++++++++..++ +.|.++..++|+.+|++|+||..|++|++++||||||+|||+|+.
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~ 402 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV 402 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC
Confidence 9999999999843 36778888888875443 444888999999999999999999999999999999999999999
Q ss_pred CC-cccccc------CCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHH
Q 008544 378 PS-NDFFKQ------FPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAE 435 (562)
Q Consensus 378 ~~-~e~v~~------~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~ 435 (562)
++ .|++.+ +.+|++++ |+++++++|.++++|++. +|+++++ +.|+|+.+++++.++|+
T Consensus 403 g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 403 GSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred CChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 98 899888 56898874 999999999999998875 7887776 78999999999999985
No 34
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.98 E-value=2.9e-30 Score=267.35 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=223.5
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.+ ..||.+..+..+++.|.+.| |+|+++++... +.. + .. . +.. .....
T Consensus 1 kIl~~~~~~--~~GG~~~~~~~l~~~L~~~~-~~v~~i~~~~~--~~~--~---------~~--~-~~~---~~~~~--- 55 (358)
T cd03812 1 KILHIVGTM--NRGGIETFIMNYYRNLDRSK-IQFDFLVTSKE--EGD--Y---------DD--E-IEK---LGGKI--- 55 (358)
T ss_pred CEEEEeCCC--CCccHHHHHHHHHHhcCccc-eEEEEEEeCCC--Ccc--h---------HH--H-HHH---cCCeE---
Confidence 689999876 57888899999999999887 99999987221 000 0 00 0 000 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-C-EEEEEcCCcHHHHhhhhchH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~-vi~~~h~~~~~~~~~~~~~~ 208 (562)
+.+..... .....+..+.+.+++.+||+||++.+... ++ ...+.+... + .+...|..+..... ...
T Consensus 56 ~~~~~~~~------~~~~~~~~~~~~~~~~~~Dvv~~~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~ 123 (358)
T cd03812 56 YYIPARKK------NPLKYFKKLYKLIKKNKYDIVHVHGSSAS-GF--ILLAAKKAGVKVRIAHSHNTSDSHDK---KKK 123 (358)
T ss_pred EEecCCCc------cHHHHHHHHHHHHhcCCCCEEEEeCcchh-HH--HHHHHhhCCCCeEEEEeccccccccc---cch
Confidence 00000000 01111334666778899999999988744 22 233444333 3 45566654322111 100
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhccC-----CCcc-ccccccCCCCcCcchh-hhHHhhcCCCCCccEEEEEee
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-----NSIV-CNVHGVNPKFLEIGEK-KMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-----~~~~-~~v~GVd~~~~~~~~~-~~~~~~~~~~~~~~~il~vGr 281 (562)
. .....+.....+ .+|.++++|+..++.. ...+ ...+|+|.+.+.+... .......+..++.+.++|+|+
T Consensus 124 ~--~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr 200 (358)
T cd03812 124 I--LKYKVLRKLINR-LATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGR 200 (358)
T ss_pred h--hHHHHHHHHHHh-cCCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEec
Confidence 0 011222333333 3799999998877642 2223 3346898866544322 111333455566889999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCc
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVC 359 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~ 359 (562)
+.++||++.+++++..+.++.|+++++++|+|+..+.+++.++++++. +.+.+..+++.++|+.||++|+||..|++|
T Consensus 201 ~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~ 280 (358)
T cd03812 201 FSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLP 280 (358)
T ss_pred cccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCC
Confidence 999999999999999999889999999999999988999988888765 445666788889999999999999999999
Q ss_pred HHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 360 TATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 360 ~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
++++||||||+|||+|+.++ .+++.++.+++..+ ++++++++|.++++++.. .+...+.
T Consensus 281 ~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~ 343 (358)
T cd03812 281 LVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKK 343 (358)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhh
Confidence 99999999999999999998 88888855444444 679999999999999997 4554444
No 35
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.97 E-value=2.8e-30 Score=271.48 Aligned_cols=356 Identities=15% Similarity=0.100 Sum_probs=232.3
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccc-cCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQV-YPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
++++.+....|..||++..+..++++|.+.| |+|++++........... ..+++.+.. ...
T Consensus 8 ~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g-~~V~v~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-- 69 (398)
T cd03800 8 HGSPLAQPGGADTGGQNVYVLELARALARLG-HEVDIFTRRIDDALPPIVELAPGVRVVR---------------VPA-- 69 (398)
T ss_pred cccccccCCCCCCCceeehHHHHHHHHhccC-ceEEEEEecCCcccCCccccccceEEEe---------------ccc--
Confidence 4445555555778999999999999999998 999999873321110000 001111110 000
Q ss_pred Ccccccccccchhccchh-hhHHhHHhhcCcC--CCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhh
Q 008544 130 TFDTRFYPGKFAADKKSI-LAVGDITEIIPDE--EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREK 205 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~-~~~~~l~~~i~~~--~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~ 205 (562)
......+.+. ..... .....+.+.+++. +||+||++..... +. +..+++..+ |.|.++|+..........
T Consensus 70 -~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~ 143 (398)
T cd03800 70 -GPAEYLPKEE--LWPYLDEFADDLLRFLRREGGRPDLIHAHYWDSG-LV--ALLLARRLGIPLVHTFHSLGAVKRRHLG 143 (398)
T ss_pred -ccccCCChhh--cchhHHHHHHHHHHHHHhcCCCccEEEEecCccc-hH--HHHHHhhcCCceEEEeecccccCCcccc
Confidence 0000000000 00000 0122344555555 8999999975433 22 233444445 888899965332111100
Q ss_pred chHH-HHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CC-ccccccccCCCCcCcchhhhH-HhhcCCCCCccE
Q 008544 206 NDRL-QAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NS-IVCNVHGVNPKFLEIGEKKME-QQQNGNKAFTKG 275 (562)
Q Consensus 206 ~~~~-~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~-~~~~v~GVd~~~~~~~~~~~~-~~~~~~~~~~~~ 275 (562)
.... .........+.+.+ .+|.++++|+..++.. .. .....+|+|...+.+...... +.....+.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (398)
T cd03800 144 AADTYEPARRIEAEERLLR-AADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPR 222 (398)
T ss_pred cccccchhhhhhHHHHHHh-hCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcE
Confidence 0000 00111122233333 3899999998765521 11 223346888876654433222 223344556789
Q ss_pred EEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCH------HHHHHHHHhcCCe--eEEeCCCC--ChHHHHhh
Q 008544 276 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF------DQIQRAAKKLKLV--VRVYPGRD--HADPIFHD 345 (562)
Q Consensus 276 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~------~~l~~~~~~l~l~--~~~~~~~~--~~~~l~~~ 345 (562)
++|+||+.+.||++.+++++..+.++.++++|+++|++... ..++..++.+++. +.+++..+ ++.++++.
T Consensus 223 i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 302 (398)
T cd03800 223 ILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRA 302 (398)
T ss_pred EEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHh
Confidence 99999999999999999999999888889999999987642 3456677777654 44455533 45589999
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
+|++++||..|++|++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. .|+++++
T Consensus 303 adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 303 ADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRR 382 (398)
T ss_pred CCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 89999999999985 899999999999998765 6777666
Q ss_pred --hcCCHHHHHHHHH
Q 008544 419 --HQLSWESATERFL 431 (562)
Q Consensus 419 --~~~sw~~~~~~~~ 431 (562)
++|||+.++++++
T Consensus 383 ~~~~~s~~~~~~~~~ 397 (398)
T cd03800 383 ARARYTWERVAARLL 397 (398)
T ss_pred HHHhCCHHHHHHHHh
Confidence 7899999999886
No 36
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.97 E-value=4.4e-30 Score=281.11 Aligned_cols=272 Identities=11% Similarity=0.095 Sum_probs=188.3
Q ss_pred CCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhc--hHHHH--HHHHHHH-HHHHHHhccEEEEcC
Q 008544 160 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN--DRLQA--FLLEFVN-SWLARVHCHKVIRLS 233 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~--~~~~~--~~~~~~~-~~~~~~~ad~vi~~S 233 (562)
.+||+||+|..... +. +..++++++ |.+.+.|+.-.......+. ..... .+...+. .......||.||+.|
T Consensus 384 ~~pDlIHahy~d~g-lv--a~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT 460 (784)
T TIGR02470 384 GKPDLIIGNYSDGN-LV--ASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITST 460 (784)
T ss_pred CCCCEEEECCCchH-HH--HHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECc
Confidence 47999999986654 33 455777777 8899999662211100000 00000 1111111 122222489999999
Q ss_pred hhhhc--------c--------------------CCCccccc-cccCCCCcCcchhhhH-------------------Hh
Q 008544 234 AATQE--------Y--------------------PNSIVCNV-HGVNPKFLEIGEKKME-------------------QQ 265 (562)
Q Consensus 234 ~~~~~--------~--------------------~~~~~~~v-~GVd~~~~~~~~~~~~-------------------~~ 265 (562)
..... + +..++..+ +|+|...|.|...... ..
T Consensus 461 ~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~ 540 (784)
T TIGR02470 461 YQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDE 540 (784)
T ss_pred HHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHH
Confidence 53311 1 11222223 5999876654332211 12
Q ss_pred hcCC--CCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC------------HHHHHHHHHhcCCeeE
Q 008544 266 QNGN--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED------------FDQIQRAAKKLKLVVR 331 (562)
Q Consensus 266 ~~~~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~------------~~~l~~~~~~l~l~~~ 331 (562)
..+. ++++++|+++||+.+.||++.+++|+.++....++++|+|+|++++ .+++.++++++++..+
T Consensus 541 ~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~ 620 (784)
T TIGR02470 541 HYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQ 620 (784)
T ss_pred HhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCe
Confidence 2333 4567899999999999999999999988765556799999998642 1456677888887644
Q ss_pred --EeCCC---CChHHHHh----hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHH
Q 008544 332 --VYPGR---DHADPIFH----DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 399 (562)
Q Consensus 332 --~~~~~---~~~~~l~~----~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la 399 (562)
+.+.. .+..++|+ .+|+||+||++|+||++++||||||+|||+|+.|| .|++.++.+|++++ |+++++
T Consensus 621 V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA 700 (784)
T TIGR02470 621 IRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAA 700 (784)
T ss_pred EEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 44433 34446665 24799999999999999999999999999999999 99999999999985 999999
Q ss_pred HHHHHHH----hCCCC--CccHHHH----hcCCHHHHHHHHHHHH
Q 008544 400 EATLKAL----AEEPA--QPTDAQT----HQLSWESATERFLQVA 434 (562)
Q Consensus 400 ~~i~~ll----~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y 434 (562)
++|.+++ +|+.. +|+++++ ++|||+..+++++++.
T Consensus 701 ~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~ 745 (784)
T TIGR02470 701 EKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLA 745 (784)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999886 45544 7887776 7899999999999876
No 37
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.97 E-value=9.3e-30 Score=263.48 Aligned_cols=338 Identities=14% Similarity=0.086 Sum_probs=233.6
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
+|+++++.+ ..||....+..++++|.++| |+|++++........ ..+.. .. . .....
T Consensus 1 ~il~~~~~~--~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~~~~--~~~~~------~~-------~--~~~~~--- 57 (360)
T cd04951 1 KILYVITGL--GLGGAEKQVVDLADQFVAKG-HQVAIISLTGESEVK--PPIDA------TI-------I--LNLNM--- 57 (360)
T ss_pred CeEEEecCC--CCCCHHHHHHHHHHhcccCC-ceEEEEEEeCCCCcc--chhhc------cc-------e--EEecc---
Confidence 488888765 36888888999999999998 999999862211000 00000 00 0 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQ 210 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 210 (562)
.... .........+.+++++.+||+||++.+....+. ....+..+..+++.+.|+.... +
T Consensus 58 ---~~~~------~~~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~-~l~~~~~~~~~~v~~~h~~~~~-------~--- 117 (360)
T cd04951 58 ---SKNP------LSFLLALWKLRKILRQFKPDVVHAHMFHANIFA-RLLRLFLPSPPLICTAHSKNEG-------G--- 117 (360)
T ss_pred ---cccc------hhhHHHHHHHHHHHHhcCCCEEEEcccchHHHH-HHHHhhCCCCcEEEEeeccCch-------h---
Confidence 0000 001112334667788899999999987543221 1111112222788888854321 1
Q ss_pred HHHHHHHHHHHHHHhccEEEEcChhhhcc-------CCCcc-ccccccCCCCcCcchh--hhHHhhcCCCCCccEEEEEe
Q 008544 211 AFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIV-CNVHGVNPKFLEIGEK--KMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 211 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~-~~v~GVd~~~~~~~~~--~~~~~~~~~~~~~~~il~vG 280 (562)
.......+...+ +++.++++|+..++. +.+.+ ...+|+|...+.+... ...+...+.+++.++++|+|
T Consensus 118 -~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 195 (360)
T cd04951 118 -RLRMLAYRLTDF-LSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVG 195 (360)
T ss_pred -HHHHHHHHHHhh-ccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEe
Confidence 111122222222 368888888776653 22223 3336888776654322 22233455666678999999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCC
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~ 358 (562)
++.+.||++.+++++.++.++.|+++|+|+|+|++.+.+++.+++++.. +.+.+..+++.++|+.||++++||..|++
T Consensus 196 ~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~ 275 (360)
T cd04951 196 RLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGF 275 (360)
T ss_pred eCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCC
Confidence 9999999999999999998888999999999999988999988887754 55677788888999999999999999999
Q ss_pred cHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCC---CccHH---HHhcCCHHHHHHH
Q 008544 359 CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA---QPTDA---QTHQLSWESATER 429 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~---~l~~~---ar~~~sw~~~~~~ 429 (562)
|++++|||++|+|||+++.++ .|++.+ +|+.+ +|+++++++|.+++++++. .++++ ..++|+|+.++++
T Consensus 276 ~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 353 (360)
T cd04951 276 GLVVAEAMACELPVVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQ 353 (360)
T ss_pred ChHHHHHHHcCCCEEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999988 888877 55554 6999999999999965543 34443 2289999999999
Q ss_pred HHHHHH
Q 008544 430 FLQVAE 435 (562)
Q Consensus 430 ~~~~y~ 435 (562)
+.++|+
T Consensus 354 ~~~~y~ 359 (360)
T cd04951 354 WLTLYT 359 (360)
T ss_pred HHHHhh
Confidence 999996
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.97 E-value=1.1e-29 Score=261.56 Aligned_cols=342 Identities=15% Similarity=0.078 Sum_probs=240.1
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++++..+.+ ||++.....+++.|.+.| |+|.+++..... . +. ..... ..+..
T Consensus 1 ~i~~i~~~~~~--gG~~~~~~~l~~~l~~~~-~~v~~~~~~~~~--~---~~------------~~~~~---~~i~v--- 54 (365)
T cd03807 1 KVLHVITGLDV--GGAERMLVRLLKGLDRDR-FEHVVISLTDRG--E---LG------------EELEE---AGVPV--- 54 (365)
T ss_pred CeEEEEeeccC--ccHHHHHHHHHHHhhhcc-ceEEEEecCcch--h---hh------------HHHHh---cCCeE---
Confidence 68999988866 888888999999999988 999999762100 0 00 00000 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHh--hcCCEEEEEcCCcHHHHhhhhchH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
..+..... ......+..+.+++++.+||+||++......+. ..... ...+++.+.|....... .
T Consensus 55 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~div~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~------~ 120 (365)
T cd03807 55 YCLGKRPG-----RPDPGALLRLYKLIRRLRPDVVHTWMYHADLYG---GLAARLAGVPPVIWGIRHSDLDLG------K 120 (365)
T ss_pred EEEecccc-----cccHHHHHHHHHHHHhhCCCEEEeccccccHHH---HHHHHhcCCCcEEEEecCCccccc------c
Confidence 00110000 111122445777888899999999876543221 11122 22378888886644321 0
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhccCC------Ccc-ccccccCCCCcCcchhh--hHHhhcCCCCCccEEEEE
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN------SIV-CNVHGVNPKFLEIGEKK--MEQQQNGNKAFTKGAYYI 279 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------~~~-~~v~GVd~~~~~~~~~~--~~~~~~~~~~~~~~il~v 279 (562)
........+...+.+. +|.++++|+..++... +.+ ...+|+|...+.+.... ..+.+.+.+++.+.++|+
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (365)
T cd03807 121 KSTRLVARLRRLLSSF-IPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIV 199 (365)
T ss_pred hhHhHHHHHHHHhccc-cCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEe
Confidence 1112333334444443 7888999988777322 222 23358887665543322 122345666667889999
Q ss_pred eeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHH-hcCCe--eEEeCCCCChHHHHhhcCEEEEccCCC
Q 008544 280 GRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK-KLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 280 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~-~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E 356 (562)
|++.+.||++.+++++..+.++.++++|+++|.++.....+.... +.++. +.+++..++..++|+.+|++++||..|
T Consensus 200 G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e 279 (365)
T cd03807 200 ARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSE 279 (365)
T ss_pred cccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccc
Confidence 999999999999999999988889999999999988777777666 66654 445676888889999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESAT 427 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~ 427 (562)
++|++++|||+||+|||+++.++ .|++.+ +|+++ +|+++++++|.+++++++. .++++++ ++|+|+..+
T Consensus 280 ~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (365)
T cd03807 280 GFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMV 357 (365)
T ss_pred cCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999998 888877 77776 4999999999999999865 6666665 789999999
Q ss_pred HHHHHHHH
Q 008544 428 ERFLQVAE 435 (562)
Q Consensus 428 ~~~~~~y~ 435 (562)
+++.++|+
T Consensus 358 ~~~~~~y~ 365 (365)
T cd03807 358 EAYEELYR 365 (365)
T ss_pred HHHHHHhC
Confidence 99999985
No 39
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=8.7e-30 Score=264.83 Aligned_cols=331 Identities=14% Similarity=0.103 Sum_probs=224.1
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcC-CCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG-ERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~G-g~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
|||+++++.+ |..||++..+..++++|.++| ||+|+++++.... . . .+.... ......
T Consensus 1 mkI~~~~~~~-~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~--~-------------~---~~~~~~--~~~~~~ 59 (359)
T PRK09922 1 MKIAFIGEAV-SGFGGMETVISNVINTFEESKINCEMFFFCRNDKM--D-------------K---AWLKEI--KYAQSF 59 (359)
T ss_pred CeeEEecccc-cCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCC--C-------------h---HHHHhc--chhccc
Confidence 6999998865 556998999999999999993 3999999872210 0 0 000000 000000
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC---CEEEEEcCCcHHHHhhhh
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR---FVVGIVHTNYLEYVKREK 205 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~---~vi~~~h~~~~~~~~~~~ 205 (562)
+...+.... .......+.+++++.+||+||++++... ++ +....+..+ +++.+.|.......
T Consensus 60 ~~~~~~~~~--------~~~~~~~l~~~l~~~~~Dii~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~h~~~~~~~---- 124 (359)
T PRK09922 60 SNIKLSFLR--------RAKHVYNFSKWLKETQPDIVICIDVISC-LY--ANKARKKSGKQFKIFSWPHFSLDHKK---- 124 (359)
T ss_pred ccchhhhhc--------ccHHHHHHHHHHHhcCCCEEEEcCHHHH-HH--HHHHHHHhCCCCeEEEEecCcccccc----
Confidence 111111110 0111345778889999999999987554 22 222222222 35555664322110
Q ss_pred chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCC------Cccc-cccccCCCCcCcchhhhHHhhcCCCCCccEEEE
Q 008544 206 NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN------SIVC-NVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYY 278 (562)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------~~~~-~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~ 278 (562)
.. .. ..+ ..+|.++++|+..++... +.+. ..||+|.+.+.... ....+.+.++|
T Consensus 125 -------~~-~~-~~~--~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~--------~~~~~~~~i~~ 185 (359)
T PRK09922 125 -------HA-EC-KKI--TCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPP--------PERDKPAVFLY 185 (359)
T ss_pred -------hh-hh-hhh--hcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCC--------cccCCCcEEEE
Confidence 00 00 011 237999999988877422 1222 23577643221100 01123678999
Q ss_pred Eeeccc--cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCCh----HHHHhhcCEEE
Q 008544 279 IGRMVW--SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHA----DPIFHDYKVFL 350 (562)
Q Consensus 279 vGr~~~--~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~----~~l~~~adv~v 350 (562)
+||+.+ .||++.+++++.++. ++++|+++|+|++.+.+++.++++++. +.+.|..++. .++|+.+|++|
T Consensus 186 ~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v 262 (359)
T PRK09922 186 VGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALL 262 (359)
T ss_pred EEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEE
Confidence 999964 599999999998764 379999999999999999999988875 4455554443 36677899999
Q ss_pred EccCCCCCcHHHHHHHHcCCcEEeeC-CCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCCCccHH---HHhcCCH
Q 008544 351 NPSTTDVVCTATAEALAMGKIVVCAN-HPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPAQPTDA---QTHQLSW 423 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma~G~PVI~t~-~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~~l~~~---ar~~~sw 423 (562)
+||..|+||++++||||||+|||+++ .++ .|++.++.+|+++ +|+++++++|.+++++++.+.... ..++|+-
T Consensus 263 ~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 263 LTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred ECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 99999999999999999999999999 677 8999999999997 499999999999999998532222 2278899
Q ss_pred HHHHHHHHHHHHhcC
Q 008544 424 ESATERFLQVAELVG 438 (562)
Q Consensus 424 ~~~~~~~~~~y~~~~ 438 (562)
+..++++.+.|+..+
T Consensus 343 ~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 343 VLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998654
No 40
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.3e-29 Score=262.93 Aligned_cols=342 Identities=14% Similarity=0.109 Sum_probs=220.1
Q ss_pred eEEEEec-ccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 51 HIAIFTT-ASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 51 rI~ivt~-~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
||+|++. .++|..||++.....++++|.++| |+|+|+++..........+ +++++... +
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g-~~v~v~~~~~~~~~~~~~~-~~i~~~~~------------------~ 60 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARG-HEVTVYCRSPYPKQKETEY-NGVRLIHI------------------P 60 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcC-CCEEEEEccCCCCCccccc-CCceEEEc------------------C
Confidence 6899965 466778999999999999999998 9999998832111100000 11111100 0
Q ss_pred CcccccccccchhccchhhhHHhHHhhc-CcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhch
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i-~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~ 207 (562)
...... . ......+..+...+ .+.++|++|...+....+ ..+.++.+ |++.++|+.... . ....
T Consensus 61 ~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~v~~~h~~~~~--~-~~~~ 126 (363)
T cd04955 61 APEIGG----L---GTIIYDILAILHALFVKRDIDHVHALGPAIAPF----LPLLRLKGKKVVVNMDGLEWK--R-AKWG 126 (363)
T ss_pred CCCccc----h---hhhHHHHHHHHHHHhccCCeEEEEecCccHHHH----HHHHHhcCCCEEEEccCccee--e-cccc
Confidence 000000 0 00000111122222 345677777666654211 12333334 888888864211 1 1111
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhccC-----CCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeec
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-----NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-----~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
.....+.+...++..+. +|.++++|+..++.. .......+|+|...+.+ ........+..+ ...++|+|++
T Consensus 127 ~~~~~~~~~~~~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~--~~~~~~~~~~~~-~~~i~~~G~~ 202 (363)
T cd04955 127 RPAKRYLKFGEKLAVKF-ADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVSSE--EDEILKKYGLEP-GRYYLLVGRI 202 (363)
T ss_pred cchhHHHHHHHHHHHhh-ccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhcch--hhhhHHhcCCCC-CcEEEEEecc
Confidence 11122333333444443 899999998887743 22233346888766543 111222333333 4568899999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHH-hcCC--eeEEeCCCCC--hHHHHhhcCEEEEccCC-C
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK-KLKL--VVRVYPGRDH--ADPIFHDYKVFLNPSTT-D 356 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~-~l~l--~~~~~~~~~~--~~~l~~~adv~v~pS~~-E 356 (562)
.+.||++.+++++.++.. +++|+++|+|+....+.+.++ .++. ++++.+...+ ..+++..+|++++||.. |
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e 279 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVG 279 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCC
Confidence 999999999999988753 799999999866555555444 3443 3555665444 34899999999999988 9
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATER 429 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~ 429 (562)
+||++++|||+||+|||+|+.++ .|++.+ +|+++++.+.++++|.+++++++. .++++++ ++|||+.++++
T Consensus 280 ~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~ 357 (363)
T cd04955 280 GTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQ 357 (363)
T ss_pred CCChHHHHHHHcCCCEEEecCCccceeecC--CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999997 788766 677766444499999999999865 6777766 57999999999
Q ss_pred HHHHHH
Q 008544 430 FLQVAE 435 (562)
Q Consensus 430 ~~~~y~ 435 (562)
++++|+
T Consensus 358 ~~~~y~ 363 (363)
T cd04955 358 YEELYK 363 (363)
T ss_pred HHHHhC
Confidence 999985
No 41
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=6.3e-30 Score=266.05 Aligned_cols=339 Identities=14% Similarity=0.053 Sum_probs=227.6
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.++|. ++++...+++.|. | |+|++++...........-...+........ .....+
T Consensus 1 ~~~~~~~~~~~~---~e~~~~~~~~~l~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------- 63 (367)
T cd05844 1 RVLIFRPLLLAP---SETFVRNQAEALR--R-FRPVYVGGRRLGPAPLGALAVRLADLAGGKA-GLRLGA---------- 63 (367)
T ss_pred CEEEEeCCCCCC---chHHHHHHHHhcc--c-CCcEEEEeeccCCCCCcccceeeeecccchh-HHHHHH----------
Confidence 588999988774 5888999999995 4 8888887622110000000000000000000 000000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
..........+..++++.+||+||++..... +. +..++++.+ |++.++|+.............
T Consensus 64 ------------~~~~~~~~~~~~~~~~~~~~dvvh~~~~~~~-~~--~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~- 127 (367)
T cd05844 64 ------------LRLLTGSAPQLRRLLRRHRPDLVHAHFGFDG-VY--ALPLARRLGVPLVVTFHGFDATTSLALLLRS- 127 (367)
T ss_pred ------------HHhccccccHHHHHHHhhCCCEEEeccCchH-HH--HHHHHHHcCCCEEEEEeCccccccchhhccc-
Confidence 0000000112444677889999999876543 22 223445444 899999964221111101000
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccCC------Ccc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeec
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPN------SIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
.........+.+.+. +|.++++|+..++... ..+ +..+|+|...+.+.. ...+.+.++|+|++
T Consensus 128 ~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~---------~~~~~~~i~~~G~~ 197 (367)
T cd05844 128 RWALYARRRRRLARR-AALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPAT---------PARRPPRILFVGRF 197 (367)
T ss_pred chhHHHHHHHHHHHh-cCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCC---------CCCCCcEEEEEEee
Confidence 011222233333333 7999999998887422 122 233588776655321 11235789999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccC----
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPST---- 354 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~---- 354 (562)
.+.||++.+++++..+.++.++++|+++|.|+..+++++.++++++. +.+.+.. +++.++|+.+|++|+||.
T Consensus 198 ~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 198 VEKKGPLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred ccccChHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCC
Confidence 99999999999999998888999999999998888899999887654 4455554 346699999999999996
Q ss_pred --CCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCH
Q 008544 355 --TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSW 423 (562)
Q Consensus 355 --~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw 423 (562)
.|++|++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. +|+++++ ++|+|
T Consensus 278 ~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 357 (367)
T cd05844 278 GDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDL 357 (367)
T ss_pred CCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCH
Confidence 5999999999999999999999998 89999999999984 999999999999998875 6777665 78999
Q ss_pred HHHHHHHHH
Q 008544 424 ESATERFLQ 432 (562)
Q Consensus 424 ~~~~~~~~~ 432 (562)
+..++++.+
T Consensus 358 ~~~~~~l~~ 366 (367)
T cd05844 358 RRQTAKLEA 366 (367)
T ss_pred HHHHHHHhc
Confidence 999999875
No 42
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.97 E-value=1.5e-29 Score=262.72 Aligned_cols=358 Identities=16% Similarity=0.147 Sum_probs=236.5
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCcccccccc------CCCceeCCchhhHHHHHHHhhhc
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVY------PGNITFASPKEQEAYVRWWLEDR 124 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~------p~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
||+++++.+.|..+|.+..+..++++|.++| |+|+++++........... .+++.+..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 64 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG-HEVTVITGSPNYPSGKIYKGYKREEVDGVRVHR--------------- 64 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC-ceEEEEecCCCcccccccccceEEecCCeEEEE---------------
Confidence 6999999998888999999999999999998 9999998733111111000 00100000
Q ss_pred cCCCCCcccccccccchhccchhhhHHhHHhhc-CcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHh
Q 008544 125 TGFTSTFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVK 202 (562)
Q Consensus 125 ~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i-~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~ 202 (562)
........... ..+..... .+......... +..+||+||++.+.....+. +....++.+ |++.++|+.++....
T Consensus 65 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~~ 140 (394)
T cd03794 65 VPLPPYKKNGL-LKRLLNYL--SFALSALLALLKRRRRPDVIIATSPPLLIALA-ALLLARLKGAPFVLEVRDLWPESAV 140 (394)
T ss_pred EecCCCCccch-HHHHHhhh--HHHHHHHHHHHhcccCCCEEEEcCChHHHHHH-HHHHHHhcCCCEEEEehhhcchhHH
Confidence 00000000000 00000000 00111122222 47889999999854442221 222333333 899999977654432
Q ss_pred hhh---chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCC------Ccc-ccccccCCCCcCcchhhhHHhhcCCCCC
Q 008544 203 REK---NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN------SIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAF 272 (562)
Q Consensus 203 ~~~---~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~ 272 (562)
... .......+...+.+...+. +|.++++|+..++... ..+ ...+|++...+.+..............+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (394)
T cd03794 141 ALGLLKNGSLLYRLLRKLERLIYRR-ADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDD 219 (394)
T ss_pred HccCccccchHHHHHHHHHHHHHhc-CCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCC
Confidence 211 1111112333333333333 8999999988877431 222 2335777765554332211222334455
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCCC--CChHHHHhhcCEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGR--DHADPIFHDYKVF 349 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~~--~~~~~l~~~adv~ 349 (562)
...++|+|++.+.||++.+++++.++.+. ++++|+++|.|+..+.+++.+...+.. +.+++.. ++..++|+.+|++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~ 298 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVG 298 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCee
Confidence 78899999999999999999999999877 899999999999888888876655554 5556644 4555999999999
Q ss_pred EEccCCCCC-----cHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH-
Q 008544 350 LNPSTTDVV-----CTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT- 418 (562)
Q Consensus 350 v~pS~~E~~-----~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar- 418 (562)
++||..|++ |++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++|+.. .|+++++
T Consensus 299 i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 378 (394)
T cd03794 299 LVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRR 378 (394)
T ss_pred EEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 999987765 889999999999999999998 88888888898874 899999999999988876 7777666
Q ss_pred ---hcCCHHHHHHHH
Q 008544 419 ---HQLSWESATERF 430 (562)
Q Consensus 419 ---~~~sw~~~~~~~ 430 (562)
++|+|+.+++++
T Consensus 379 ~~~~~~s~~~~~~~~ 393 (394)
T cd03794 379 YVEEKFSREKLAERL 393 (394)
T ss_pred HHHHhhcHHHHHHhc
Confidence 589999999876
No 43
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.97 E-value=1.5e-29 Score=261.84 Aligned_cols=337 Identities=18% Similarity=0.074 Sum_probs=228.7
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+||++. +|..+|.+.....+++.|.+.| |+|++++..... .. .. .... . ...
T Consensus 1 kI~~v~~~-~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~--~~--~~------~~~~--~--------~~~---- 54 (366)
T cd03822 1 RIALVSPY-PPRKCGIATFTTDLVNALSARG-PDVLVVSVAALY--PS--LL------YGGE--Q--------EVV---- 54 (366)
T ss_pred CeEEecCC-CCCCCcHHHHHHHHHHHhhhcC-CeEEEEEeeccc--Cc--cc------CCCc--c--------cce----
Confidence 68999874 5778999999999999999998 999999762210 00 00 0000 0 000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchh--hhh-hchHHHHhhcC-CEEEEEcCCcHHHHhhhhc
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHL--TWF-HHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~--~~~-~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~ 206 (562)
.... .........+.+.+++.+||+||++..... ... ..........+ |+|.++|+......
T Consensus 55 ~~~~---------~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----- 120 (366)
T cd03822 55 RVIV---------LDNPLDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP----- 120 (366)
T ss_pred eeee---------cCCchhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc-----
Confidence 0000 000111233666778889999999873221 011 00011112233 89999997511110
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEEEcC-hhhhccCC----Ccc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEe
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVIRLS-AATQEYPN----SIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi~~S-~~~~~~~~----~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 280 (562)
. .....+.+.+.+. +|.++++| +..+++.. +.+ ...+|++...+...... .......+.+.++|+|
T Consensus 121 ~----~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G 192 (366)
T cd03822 121 R----PGDRALLRLLLRR-ADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESL---KALGGLDGRPVLLTFG 192 (366)
T ss_pred c----hhhhHHHHHHHhc-CCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhh---HhhcCCCCCeEEEEEe
Confidence 0 1112222223333 79999995 55555322 223 33368877665433221 2223344578899999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHH-----HHHHhcCCe--eEEeCC---CCChHHHHhhcCEEE
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQ-----RAAKKLKLV--VRVYPG---RDHADPIFHDYKVFL 350 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~-----~~~~~l~l~--~~~~~~---~~~~~~l~~~adv~v 350 (562)
++.+.||++.+++++..+.++.++++|+++|.+....... ++++++++. +.++++ .++..++|+.+|+++
T Consensus 193 ~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v 272 (366)
T cd03822 193 LLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVV 272 (366)
T ss_pred eccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEE
Confidence 9999999999999999999888999999999976533222 125666654 455666 345669999999999
Q ss_pred EccCCC--CCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH---hcC
Q 008544 351 NPSTTD--VVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQL 421 (562)
Q Consensus 351 ~pS~~E--~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---~~~ 421 (562)
+||..| ++|++++|||+||+|||+++.++.+.+.++.+|++++ |+++++++|.++++++.. +|+++++ ++|
T Consensus 273 ~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 352 (366)
T cd03822 273 LPYRSADQTQSGVLAYAIGFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAM 352 (366)
T ss_pred ecccccccccchHHHHHHHcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhC
Confidence 999999 9999999999999999999998877777888899874 899999999999998765 7887776 569
Q ss_pred CHHHHHHHHHHHHH
Q 008544 422 SWESATERFLQVAE 435 (562)
Q Consensus 422 sw~~~~~~~~~~y~ 435 (562)
+|+.+++++.++|+
T Consensus 353 s~~~~~~~~~~~~~ 366 (366)
T cd03822 353 SWERVAERYLRLLA 366 (366)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999884
No 44
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.7e-29 Score=261.18 Aligned_cols=331 Identities=17% Similarity=0.116 Sum_probs=225.3
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-CCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
||++++..|+|..||.+.....++++|.++| |+|++++.... .....+. ... .....+
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~--~~~~~~~~~~~------------------~~~~~~ 59 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARG-IEVAVLCASPE--PKGRDEERNGH------------------RVIRAP 59 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCC-CceEEEecCCC--CcchhhhccCc------------------eEEEee
Confidence 6999999999989998999999999999998 99999987221 1000000 000 000000
Q ss_pred C-cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchH
Q 008544 130 T-FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 130 ~-~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
. ......+. . ....... .+...+||+||++.+.....+ ...+..+..+.+.++|+...... .
T Consensus 60 ~~~~~~~~~~-------~-~~~~~~~-~~~~~~~Dii~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~------~ 122 (357)
T cd03795 60 SLLNVASTPF-------S-PSFFKQL-KKLAKKADVIHLHFPNPLADL--ALLLLPRKKPVVVHWHSDIVKQK------L 122 (357)
T ss_pred cccccccccc-------c-HHHHHHH-HhcCCCCCEEEEecCcchHHH--HHHHhccCceEEEEEcChhhccc------h
Confidence 0 00000000 0 0001011 155778999999987765333 12222222378889996532110 1
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhcc-------CCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
...+.+.+.++..+. ||.++++|+..++. ..+.....+|++...+.+...... .......+.+.++|+|+
T Consensus 123 -~~~~~~~~~~~~~~~-~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~ 199 (357)
T cd03795 123 -LLKLYRPLQRRFLRR-ADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGR 199 (357)
T ss_pred -hhhhhhHHHHHHHHh-cCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecc
Confidence 112223333333333 79999999887662 112223346888877654332211 12233455789999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCC--hHHHHhhcCEEEEccC--C
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDH--ADPIFHDYKVFLNPST--T 355 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~--~~~l~~~adv~v~pS~--~ 355 (562)
+.+.||++.+++++.++. +++|+++|+|+....+++.+++++.. +.+.+..++ ..++|+.||++++||. .
T Consensus 200 ~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~ 275 (357)
T cd03795 200 LVYYKGLDVLLEAAAALP----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERS 275 (357)
T ss_pred cccccCHHHHHHHHHhcc----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccc
Confidence 999999999999998876 79999999999888898888777665 444555443 4589999999999985 6
Q ss_pred CCCcHHHHHHHHcCCcEEeeCCCC-cccccc-CCceEee--CCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHH
Q 008544 356 DVVCTATAEALAMGKIVVCANHPS-NDFFKQ-FPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT----HQLSWES 425 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~-~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~ 425 (562)
|++|++++|||+||+|||+++.++ .+.+.+ +.+|+++ +|+++++++|.+++++++. .|+++++ +.|||+.
T Consensus 276 e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 276 EAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred cccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHh
Confidence 999999999999999999999987 777775 8899987 4899999999999998876 7777777 7899987
Q ss_pred H
Q 008544 426 A 426 (562)
Q Consensus 426 ~ 426 (562)
+
T Consensus 356 ~ 356 (357)
T cd03795 356 M 356 (357)
T ss_pred h
Confidence 5
No 45
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=4.5e-29 Score=263.06 Aligned_cols=361 Identities=14% Similarity=0.079 Sum_probs=225.7
Q ss_pred EEEEecccC-CCcccccccHHHHHHHHHHcCCCeEEEEeecCCcccccc---c--cCCCceeCCchhhHHHHHHHhhhcc
Q 008544 52 IAIFTTASL-PWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ---V--YPGNITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 52 I~ivt~~~~-P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~---~--~p~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
|+++|..++ |-..|..++++.++++|++. |+|++++......+... . +.+.+............+.. .
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~ 74 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSL----L 74 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHH----h
Confidence 577876542 44567699999999999873 89999987321111100 0 00110000000000000000 0
Q ss_pred CCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHH-HHhhh
Q 008544 126 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLE-YVKRE 204 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~-~~~~~ 204 (562)
.......+.. . ...+......+.+.+++.++|+||+++.....+. . ......|.|...|+.... +....
T Consensus 75 ~l~~~~p~~~-----~-~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~---~-~~~~~~p~i~~~~d~~~~~~~~~~ 144 (397)
T TIGR03087 75 GLLTGEPLSL-----P-YYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYV---T-PHVRGVPRIVDFVDVDSDKWLQYA 144 (397)
T ss_pred hhcCCCCCcc-----h-hhCCHHHHHHHHHHHhhCCCCEEEEeccccceec---c-ccccCCCeEeehhhHHHHHHHHHH
Confidence 0100000000 0 0111112334667788899999999876443111 0 011123888888864221 11110
Q ss_pred h-chHHHHHH-------HHHHHHHHHHHhccEEEEcChhhhccCC-------Ccc-ccccccCCCCcCcchhhhHHhhcC
Q 008544 205 K-NDRLQAFL-------LEFVNSWLARVHCHKVIRLSAATQEYPN-------SIV-CNVHGVNPKFLEIGEKKMEQQQNG 268 (562)
Q Consensus 205 ~-~~~~~~~~-------~~~~~~~~~~~~ad~vi~~S~~~~~~~~-------~~~-~~v~GVd~~~~~~~~~~~~~~~~~ 268 (562)
. .....+.+ ...+.+.+.+ .+|.++++|+..++... ..+ +..||||.+.|.+.... ...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~e~~~~~-~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~----~~~ 219 (397)
T TIGR03087 145 RTKRWPLRWIYRREGRLLLAYERAIAA-RFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDY----PNP 219 (397)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHh-hCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccc----cCC
Confidence 0 00101111 1222333333 38999999988876321 222 33479999887653221 111
Q ss_pred CCCCccEEEEEeeccccCCHHHHH----HHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEELL----GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH 344 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~ll----~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~ 344 (562)
...+.+.++|+|++.+.||++.++ +++..+.+..|+++|+|+|+|+.. +++++.. ..++.+.|..++...+|+
T Consensus 220 ~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~~-~~~~l~~--~~~V~~~G~v~~~~~~~~ 296 (397)
T TIGR03087 220 YPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPSP-AVRALAA--LPGVTVTGSVADVRPYLA 296 (397)
T ss_pred CCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCChH-HHHHhcc--CCCeEEeeecCCHHHHHH
Confidence 233457899999999999999887 556667777899999999998753 4444432 224677788888899999
Q ss_pred hcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEee-CCHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 345 DYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 345 ~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~-~d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
.+|++|+||. .||+|++++||||||+|||+|+.++..+...+.+|+++ +|+++++++|.++++|++. +|+++++
T Consensus 297 ~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 297 HAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred hCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999996 69999999999999999999997654444444567665 6999999999999998875 7888877
Q ss_pred --hcCCHHHHHHHHHHHHHh
Q 008544 419 --HQLSWESATERFLQVAEL 436 (562)
Q Consensus 419 --~~~sw~~~~~~~~~~y~~ 436 (562)
++|||+..++++.++|+.
T Consensus 377 v~~~fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 377 VLQHYHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHhCCHHHHHHHHHHHhcC
Confidence 689999999999999864
No 46
>PLN00142 sucrose synthase
Probab=99.97 E-value=2.6e-29 Score=275.05 Aligned_cols=273 Identities=11% Similarity=0.087 Sum_probs=187.0
Q ss_pred CCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhch--HHHH--HHHHHH-HHHHHHHhccEEEEcC
Q 008544 160 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND--RLQA--FLLEFV-NSWLARVHCHKVIRLS 233 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~--~~~~--~~~~~~-~~~~~~~~ad~vi~~S 233 (562)
.+||+||.|.+... +. +..++.+++ |.+.+.|+.-.......+.. .... .+...+ ........||.||+.|
T Consensus 407 ~~PDlIHaHYwdsg-~v--A~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT 483 (815)
T PLN00142 407 GKPDLIIGNYSDGN-LV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITST 483 (815)
T ss_pred CCCCEEEECCccHH-HH--HHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCc
Confidence 46999999976554 33 566777777 99999996632111110000 0000 011111 1222222479999888
Q ss_pred hhhhc--------c--------------------CCCccccc-cccCCCCcCcchhhhH-------------------Hh
Q 008544 234 AATQE--------Y--------------------PNSIVCNV-HGVNPKFLEIGEKKME-------------------QQ 265 (562)
Q Consensus 234 ~~~~~--------~--------------------~~~~~~~v-~GVd~~~~~~~~~~~~-------------------~~ 265 (562)
..... + ...++..+ .|+|...|.|...... ..
T Consensus 484 ~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e 563 (815)
T PLN00142 484 YQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDE 563 (815)
T ss_pred HHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHH
Confidence 44432 1 01122223 4888865543321111 11
Q ss_pred hcCC--CCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC------CH------HHHHHHHHhcCCeeE
Q 008544 266 QNGN--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE------DF------DQIQRAAKKLKLVVR 331 (562)
Q Consensus 266 ~~~~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~------~~------~~l~~~~~~l~l~~~ 331 (562)
..+. .++.++|+++||+.+.||++.+++|+.++.+..++++|+|+|+|. +. +.+.++++++++..+
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~ 643 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQ 643 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCc
Confidence 2332 345679999999999999999999999987777789999999872 11 346677888887644
Q ss_pred --EeCCC---CChHHHHh----hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHH
Q 008544 332 --VYPGR---DHADPIFH----DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 399 (562)
Q Consensus 332 --~~~~~---~~~~~l~~----~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la 399 (562)
+.+.. .+..+++. .+|+||+||.+|+||++++||||||+|||+|+.|| .|++.++.+|++++ |+++++
T Consensus 644 V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 644 FRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred EEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHH
Confidence 44442 23344444 46999999999999999999999999999999998 99999999999985 999999
Q ss_pred HHHHHHH----hCCCC--CccHHHH----hcCCHHHHHHHHHHHHH
Q 008544 400 EATLKAL----AEEPA--QPTDAQT----HQLSWESATERFLQVAE 435 (562)
Q Consensus 400 ~~i~~ll----~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~ 435 (562)
++|.+++ +|+.. +|+++++ ++|||+.++++++++..
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~ 769 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGG 769 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9998765 46554 7888776 68999999999999763
No 47
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=1.3e-28 Score=253.69 Aligned_cols=354 Identities=20% Similarity=0.173 Sum_probs=242.4
Q ss_pred EEEEecccCCC-cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 52 IAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 52 I~ivt~~~~P~-~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
|++++..++|. .+|.+.....++++|.+.| |+|+++++.... ........ ..+.. . ..... .
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g-~~v~v~~~~~~~--~~~~~~~~---~~~~~-------~--~~~~~-~- 63 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRG-VEVTVLAPGPWG--PKLLDLLK---GRLVG-------V--ERLPV-L- 63 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCC-CceEEEecCCCC--CCchhhcc---ccccc-------c--ccccc-C-
Confidence 67888888665 6788889999999999998 999999883311 11000000 00000 0 00000 0
Q ss_pred cccccccccchhccchhhhHHhHHhhcC--cCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhch
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIP--DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~--~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~ 207 (562)
........ ...........+.+.++ ..+||+||++.+....+. ...+.+..+ |++.++|+.+........
T Consensus 64 ~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~-- 136 (377)
T cd03798 64 LPVVPLLK---GPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFA--AALLKRKLGIPLVVTLHGSDVNLLPRKR-- 136 (377)
T ss_pred cchhhccc---cchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHH--HHHHHHhcCCCEEEEeecchhcccCchh--
Confidence 00000000 00111112345677787 889999999976555433 233334333 899999976543221110
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCcccc-ccccCCCCcCcchhhhHHhhcCCCCCccEEEEEe
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCN-VHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~-v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 280 (562)
..+...+...+ .+|.++++|+..++.. ...+.. .+|+|...+.+...... .......+.+.++|+|
T Consensus 137 -----~~~~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g 209 (377)
T cd03798 137 -----LLRALLRRALR-RADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVG 209 (377)
T ss_pred -----hHHHHHHHHHh-cCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEec
Confidence 12222222333 2799999998888742 223333 35888877665433221 2223344578899999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCC--ChHHHHhhcCEEEEccCCC
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRD--HADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~--~~~~l~~~adv~v~pS~~E 356 (562)
++.+.||++.+++++..+.++.++++++++|.+++.+.+++.++.++.. +.+.+..+ +..++++.||++++||..|
T Consensus 210 ~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~ 289 (377)
T cd03798 210 RLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLRE 289 (377)
T ss_pred cCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhc
Confidence 9999999999999999998888899999999998888888888877654 44555544 3459999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCCCccHHHH----hcCCHHHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQPTDAQT----HQLSWESATER 429 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~~l~~~ar----~~~sw~~~~~~ 429 (562)
++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++...+..+++ +.|+|+..+++
T Consensus 290 ~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 369 (377)
T cd03798 290 GFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAER 369 (377)
T ss_pred cCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999988 89999999888874 9999999999999988743333333 89999999999
Q ss_pred HHHHHHh
Q 008544 430 FLQVAEL 436 (562)
Q Consensus 430 ~~~~y~~ 436 (562)
+.++|+.
T Consensus 370 ~~~~~~~ 376 (377)
T cd03798 370 LLELYRE 376 (377)
T ss_pred HHHHHhh
Confidence 9999875
No 48
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=1.9e-29 Score=264.65 Aligned_cols=275 Identities=11% Similarity=-0.004 Sum_probs=196.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CE-EEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHH---
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FV-VGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARV--- 224 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~v-i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 224 (562)
+..+..++++.+|||||+|..... .+ +...+...+ |+ +...|..++... ..+.......+.+.
T Consensus 269 ~~~l~~~ir~~rpDIVHt~~~~a~-l~--g~laA~lagvpviv~~~h~~~~~~~---------~r~~~~e~~~~~~a~~i 336 (578)
T PRK15490 269 IKHLVPHLCERKLDYLSVWQDGAC-LM--IALAALIAGVPRIQLGLRGLPPVVR---------KRLFKPEYEPLYQALAV 336 (578)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccH-HH--HHHHHHhcCCCEEEEeecccCCcch---------hhHHHHHHHHhhhhcee
Confidence 456888899999999999987653 12 111222222 55 445664222110 11111111112221
Q ss_pred --hccEEEEcChhhhc-------cCCCcc-ccccccCCCCcCcchhhh--HHh--hcCCCCCccEEEEEeeccccCCHHH
Q 008544 225 --HCHKVIRLSAATQE-------YPNSIV-CNVHGVNPKFLEIGEKKM--EQQ--QNGNKAFTKGAYYIGRMVWSKGYEE 290 (562)
Q Consensus 225 --~ad~vi~~S~~~~~-------~~~~~~-~~v~GVd~~~~~~~~~~~--~~~--~~~~~~~~~~il~vGr~~~~Kg~~~ 290 (562)
.+| +++.|..+++ .+.+++ +..||||++.|.+..... .+. ..+.+++.++++++||+.+.||+..
T Consensus 337 ~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~ 415 (578)
T PRK15490 337 VPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFA 415 (578)
T ss_pred Eecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHH
Confidence 244 5666655444 233344 344799998776543211 111 2233455678999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 368 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 368 (562)
+++++.++.++.|+++|+|+|+|+..+++++.++++++. +.|.+..+++.++|+.+|+||+||.+|+||++++|||||
T Consensus 416 LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~ 495 (578)
T PRK15490 416 WIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV 495 (578)
T ss_pred HHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHh
Confidence 999999988888999999999999999999999998875 555677788889999999999999999999999999999
Q ss_pred CCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHH---HHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 369 GKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEAT---LKALAEEPA--QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 369 G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i---~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
|+|||+|+.++ .|++.++.+|++++ |++++++++ .++.++... .|+++++ ++|||+.++++|.++|..
T Consensus 496 GlPVVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 496 GVPVISTPAGGSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred CCCEEEeCCCCcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999998 99999999999985 677777666 333333322 4666666 789999999999999975
Q ss_pred c
Q 008544 437 V 437 (562)
Q Consensus 437 ~ 437 (562)
.
T Consensus 576 ~ 576 (578)
T PRK15490 576 Q 576 (578)
T ss_pred c
Confidence 3
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.97 E-value=1e-28 Score=253.27 Aligned_cols=335 Identities=18% Similarity=0.162 Sum_probs=229.7
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++. .+|.+.....++++|.+.| |+|+++++...... .....++.+. ..+.
T Consensus 1 kIl~i~~~----~~g~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~--~~~~~~~~~~------------------~~~~ 55 (359)
T cd03808 1 KILHIVTV----DGGLYSFRLPLIKALRAAG-YEVHVVAPPGDELE--ELEALGVKVI------------------PIPL 55 (359)
T ss_pred CeeEEEec----chhHHHHHHHHHHHHHhcC-CeeEEEecCCCccc--ccccCCceEE------------------eccc
Confidence 58899886 4677888899999999998 99999987321110 0000111100 0000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHh--hcCCEEEEEcCCcHHHHhhhhchH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA--KFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
..... ...........+.+.+++.+||+||++..... ++ +....+ +..+++...|+....... ..
T Consensus 56 ~~~~~------~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~----~~ 122 (359)
T cd03808 56 DRRGI------NPFKDLKALLRLYRLLRKERPDIVHTHTPKPG-IL--GRLAARLAGVPKVIYTVHGLGFVFTS----GG 122 (359)
T ss_pred ccccc------ChHhHHHHHHHHHHHHHhcCCCEEEEccccch-hH--HHHHHHHcCCCCEEEEecCcchhhcc----ch
Confidence 00000 00111122345677788899999999976543 22 122222 223677777755332221 11
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhccCC--------Cccc-cccccCCCCcCcchhhhHHhhcCCCCCccEEEEE
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN--------SIVC-NVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYI 279 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~--------~~~~-~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~v 279 (562)
........+.++..+. +|.+++.|+..++... ..+. ..+|++...+.+.... ...+.+.++|+
T Consensus 123 ~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~ 194 (359)
T cd03808 123 LKRRLYLLLERLALRF-TDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP-------IPEDDPVFLFV 194 (359)
T ss_pred hHHHHHHHHHHHHHhh-ccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc-------cCCCCcEEEEE
Confidence 1223444444444444 7999999988877321 1111 2236666555432211 23346889999
Q ss_pred eeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHH-HHhcCC--eeEEeCCCCChHHHHhhcCEEEEccCCC
Q 008544 280 GRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRA-AKKLKL--VVRVYPGRDHADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 280 Gr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~-~~~l~l--~~~~~~~~~~~~~l~~~adv~v~pS~~E 356 (562)
|++.+.||++.+++++..+.++.++++|+++|.++........ +.+.+. .+.+.+..++..++|+.+|++++||..|
T Consensus 195 G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e 274 (359)
T cd03808 195 ARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYRE 274 (359)
T ss_pred eccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCccc
Confidence 9999999999999999999888889999999998875554443 444443 3556777888899999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESAT 427 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~ 427 (562)
++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++.+++. +++++++ ++|+|+.++
T Consensus 275 ~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 354 (359)
T cd03808 275 GLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVV 354 (359)
T ss_pred CcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999997 89999899999974 899999999999998875 6777665 889999999
Q ss_pred HHHH
Q 008544 428 ERFL 431 (562)
Q Consensus 428 ~~~~ 431 (562)
++++
T Consensus 355 ~~~~ 358 (359)
T cd03808 355 KKLL 358 (359)
T ss_pred HHhh
Confidence 8875
No 50
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=6.8e-29 Score=257.49 Aligned_cols=317 Identities=17% Similarity=0.107 Sum_probs=227.9
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||+++++. +..+|.+.....++++|.++| |+|++++... .
T Consensus 1 MkIl~~~~~--~~~gG~~~~~~~l~~~l~~~G-~~v~v~~~~~-----------~------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--DISGGAARAAYRLHRALQAAG-VDSTMLVQEK-----------K------------------------- 41 (365)
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHHHhcC-CceeEEEeec-----------c-------------------------
Confidence 689999874 556888999999999999998 9999998711 0
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhh---cCCEEEEEcCCcHHHHhh---
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK---FRFVVGIVHTNYLEYVKR--- 203 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~---~~~vi~~~h~~~~~~~~~--- 203 (562)
.+.+.++..+|||||+|......+. ..+..+ ..|.|.++|+.+......
T Consensus 42 ----------------------~~~~~~~~~~~diih~~~~~~~~~~---~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~ 96 (365)
T cd03825 42 ----------------------ALISKIEIINADIVHLHWIHGGFLS---IEDLSKLLDRKPVVWTLHDMWPFTGGCHYP 96 (365)
T ss_pred ----------------------hhhhChhcccCCEEEEEccccCccC---HHHHHHHHcCCCEEEEcccCcccccccCCc
Confidence 0344566789999999875443221 112222 238999999754321100
Q ss_pred ------------------hhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCC--------CccccccccCCCCcCc
Q 008544 204 ------------------EKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN--------SIVCNVHGVNPKFLEI 257 (562)
Q Consensus 204 ------------------~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~--------~~~~~v~GVd~~~~~~ 257 (562)
.................+.. .++.++++|+..++... +..+..+|+|...+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~ 175 (365)
T cd03825 97 GGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWAD-LNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRP 175 (365)
T ss_pred cccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhcc-CCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCC
Confidence 00001111122222222211 25789999988777432 2223346999887766
Q ss_pred chhhhHHhhcCCCCCccEEEEEeeccc--cCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeC
Q 008544 258 GEKKMEQQQNGNKAFTKGAYYIGRMVW--SKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP 334 (562)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~il~vGr~~~--~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~ 334 (562)
......+...+.+++..++++.|+... .||++.+++++..+.++ .++++++++|.++..... ..+..+.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g 250 (365)
T cd03825 176 RDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLG 250 (365)
T ss_pred CcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecC
Confidence 555545555666666677777777655 89999999999998765 578999999998654321 2333455666
Q ss_pred CCCC---hHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 335 GRDH---ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 335 ~~~~---~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
...+ ..++|+.+|++++||..|++|++++|||+||+|||+++.++ .|++.++.+|++++ |++++++++.+++++
T Consensus 251 ~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 251 SLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD 330 (365)
T ss_pred CcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 6553 44889999999999999999999999999999999999987 89999988999875 899999999999998
Q ss_pred CCC--CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 409 EPA--QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 409 ~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
++. +|+++++ ++|||+..++++.++|+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 331 PDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 874 6777665 689999999999999975
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=8.8e-29 Score=254.86 Aligned_cols=340 Identities=15% Similarity=0.106 Sum_probs=229.2
Q ss_pred eEEEEecccCCC-cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-CCceeCCchhhHHHHHHHhhhccCCC
Q 008544 51 HIAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 51 rI~ivt~~~~P~-~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
||++++..++|. .+|.......++++|.++| |+|+++++.... ...... .......... + ....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g-~~v~v~~~~~~~--~~~~~~~~~~~~~~~~~-------~---~~~~- 66 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRG-HEVAVLTAGEDP--PRQDKEVIGVVVYGRPI-------D---EVLR- 66 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcC-CceEEEeCCCCC--CCcccccccceeecccc-------c---cccC-
Confidence 699999998876 3666677889999999998 999999873211 110010 0000000000 0 0000
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhch
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~ 207 (562)
.......... ...........+.+.+++.+||+||++.+...... ...+.++.+ |++.++|+.+......
T Consensus 67 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~~~~~~---- 137 (359)
T cd03823 67 --SALPRDLFHL-SDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWLICPRQ---- 137 (359)
T ss_pred --CCchhhhhHH-HhccCHHHHHHHHHHHHHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeeeecchh----
Confidence 0000000000 00011111344677788899999999987544222 122333333 8999999653221100
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhccCC------Cc-cccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEe
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN------SI-VCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 280 (562)
...... .|.++++|+..++... .. ....+|+|...+.+... ..+.+...++|+|
T Consensus 138 ----------~~~~~~--~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~-------~~~~~~~~i~~~G 198 (359)
T cd03823 138 ----------GLFKKG--GDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR-------APPGGRLRFGFIG 198 (359)
T ss_pred ----------hhhccC--CCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc-------CCCCCceEEEEEe
Confidence 000111 3999999988777321 12 22335787766543221 2344567899999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEEEccC-CCC
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-TDV 357 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v~pS~-~E~ 357 (562)
++.+.||++.+++++..+.+ ++++|+++|.++......... .....+.+.+.. ++..++|+.+|++++||. .|+
T Consensus 199 ~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~ 275 (359)
T cd03823 199 QLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPEN 275 (359)
T ss_pred cCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCC
Confidence 99999999999999999876 689999999987765444333 333446666665 566699999999999997 799
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQ 432 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~~~~~~~ 432 (562)
+|++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.++++++.. .+++++++..+.+.+++++++
T Consensus 276 ~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
T cd03823 276 FPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLK 355 (359)
T ss_pred CChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence 9999999999999999999998 89999988999974 799999999999998875 788888877777999999999
Q ss_pred HHH
Q 008544 433 VAE 435 (562)
Q Consensus 433 ~y~ 435 (562)
+|+
T Consensus 356 ~~~ 358 (359)
T cd03823 356 LYR 358 (359)
T ss_pred Hhh
Confidence 986
No 52
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.97 E-value=7.1e-29 Score=256.68 Aligned_cols=314 Identities=17% Similarity=0.157 Sum_probs=218.2
Q ss_pred ccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCcccccccccchhc
Q 008544 64 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 143 (562)
Q Consensus 64 ~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~ 143 (562)
||++.....++++|.++| |+|+++++... .. .. ... ..... ..+...... .
T Consensus 10 gG~e~~~~~l~~~L~~~g-~~v~v~~~~~~--~~-------------~~----~~~---~~~~~---~~~~~~~~~---~ 60 (355)
T cd03819 10 GGVERGTLELARALVERG-HRSLVASAGGR--LV-------------AE----LEA---EGSRH---IKLPFISKN---P 60 (355)
T ss_pred CcHHHHHHHHHHHHHHcC-CEEEEEcCCCc--hH-------------HH----HHh---cCCeE---EEccccccc---h
Confidence 898999999999999998 99999976210 00 00 000 00000 000000000 0
Q ss_pred cchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHH
Q 008544 144 KKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLA 222 (562)
Q Consensus 144 ~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (562)
.........+.+.+++.+||+||+++.... +. +..+.+..+ |++.++|+.+.... .....+.
T Consensus 61 ~~~~~~~~~l~~~~~~~~~dii~~~~~~~~-~~--~~~~~~~~~~~~i~~~h~~~~~~~--------------~~~~~~~ 123 (355)
T cd03819 61 LRILLNVARLRRLIREEKVDIVHARSRAPA-WS--AYLAARRTRPPFVTTVHGFYSVNF--------------RYNAIMA 123 (355)
T ss_pred hhhHHHHHHHHHHHHHcCCCEEEECCCchh-HH--HHHHHHhcCCCEEEEeCCchhhHH--------------HHHHHHH
Confidence 111112345677788899999999986543 22 222333334 89999997653311 1111222
Q ss_pred HHhccEEEEcChhhhccCC-------Ccc-ccccccCCCCcCcchhhh-----HHhhcCCCCCccEEEEEeeccccCCHH
Q 008544 223 RVHCHKVIRLSAATQEYPN-------SIV-CNVHGVNPKFLEIGEKKM-----EQQQNGNKAFTKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 223 ~~~ad~vi~~S~~~~~~~~-------~~~-~~v~GVd~~~~~~~~~~~-----~~~~~~~~~~~~~il~vGr~~~~Kg~~ 289 (562)
+ +|.++++|+..++... ..+ ...+|+|...+.+..... .+...+.+++.++++|+|++.++||++
T Consensus 124 ~--~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~ 201 (355)
T cd03819 124 R--GDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQE 201 (355)
T ss_pred h--cCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHH
Confidence 2 7999999988877322 222 233688887765432211 123344556678899999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCH----HHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEcc-CCCCCcHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDLYGNGEDF----DQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPS-TTDVVCTAT 362 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~ivG~g~~~----~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS-~~E~~~~~~ 362 (562)
.+++++..+.+..++++++++|.++.. +.+.+.+++++.. +.+++..+++.++|+.+|++++|| ..|++|+++
T Consensus 202 ~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l 281 (355)
T cd03819 202 VFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTA 281 (355)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHH
Confidence 999999999888789999999998764 3344566666654 566777888899999999999999 799999999
Q ss_pred HHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHh-CCCC--CccHHHH----hcCCHHH
Q 008544 363 AEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALA-EEPA--QPTDAQT----HQLSWES 425 (562)
Q Consensus 363 lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~-~~~~--~l~~~ar----~~~sw~~ 425 (562)
+||||||+|||+++.++ .|++.++.+|+++ +|+++++++|..++. +++. +++++++ .+|+|+.
T Consensus 282 ~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 282 VEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999987 8999998899997 499999999976665 4443 6777776 7888875
No 53
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.97 E-value=9.2e-29 Score=255.51 Aligned_cols=326 Identities=15% Similarity=0.114 Sum_probs=228.0
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.|+|. ++..+..++..|.++| |+|++++......... .. . ....... ..+.
T Consensus 1 ki~~~~~~~~~~---~~~~~~~~~~~L~~~g-~~v~v~~~~~~~~~~~--~~-~-~~~~~~~-~~~~------------- 58 (355)
T cd03799 1 KIAYLVKEFPRL---SETFILREILALEAAG-HEVEIFSLRPPEDTLV--HP-E-DRAELAR-TRYL------------- 58 (355)
T ss_pred CEEEECCCCCCc---chHHHHHHHHHHHhCC-CeEEEEEecCcccccc--cc-c-ccccccc-hHHH-------------
Confidence 699999998553 5778899999999998 9999998732110000 00 0 0000000 0000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhc--CCEEEEEcCCcHHHHhhhhchH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF--RFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~--~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
............+.+.+++.++|+||+|........ ..+..+. .+++.++|....... . ..
T Consensus 59 ----------~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ 121 (355)
T cd03799 59 ----------ARSLALLAQALVLARELRRLGIDHIHAHFGTTPATV---AMLASRLGGIPYSFTAHGKDIFRS-P---DA 121 (355)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCCCEEEECCCCchHHH---HHHHHHhcCCCEEEEEeccccccc-C---ch
Confidence 000111111233555667789999999987544222 2233332 378888885422111 0 00
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhccCCC-------cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEe
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS-------IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIG 280 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~-------~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vG 280 (562)
......+.. +|.++++|+..++...+ .+ ...+|+|.+.+.+.. .....+...++|+|
T Consensus 122 ------~~~~~~~~~--~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~-------~~~~~~~~~i~~~g 186 (355)
T cd03799 122 ------IDLDEKLAR--ADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP-------PPPPGEPLRILSVG 186 (355)
T ss_pred ------HHHHHHHhh--CCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc-------ccccCCCeEEEEEe
Confidence 111222222 79999999888874322 12 223588876665432 11223467899999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccCC-
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTT- 355 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~~- 355 (562)
++.+.||++.+++++.++.++.++++|+++|.|+..+.+++.++++++. +.+.+.. +++.++|+.+|++++||..
T Consensus 187 ~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~ 266 (355)
T cd03799 187 RLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTA 266 (355)
T ss_pred eeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceec
Confidence 9999999999999999998888899999999999989999988887664 4455554 4566999999999999998
Q ss_pred -----CCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcC
Q 008544 356 -----DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQL 421 (562)
Q Consensus 356 -----E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~ 421 (562)
|++|++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. .|+++++ ++|
T Consensus 267 ~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~ 346 (355)
T cd03799 267 ADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEF 346 (355)
T ss_pred CCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 89999998999984 899999999999998875 7777776 789
Q ss_pred CHHHHHHHH
Q 008544 422 SWESATERF 430 (562)
Q Consensus 422 sw~~~~~~~ 430 (562)
+|+..++++
T Consensus 347 s~~~~~~~l 355 (355)
T cd03799 347 DIRKQAARL 355 (355)
T ss_pred CHHHHhhcC
Confidence 999988753
No 54
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=3.6e-29 Score=258.79 Aligned_cols=343 Identities=15% Similarity=0.046 Sum_probs=229.4
Q ss_pred eEEEEecccCC-CcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 51 HIAIFTTASLP-WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 51 rI~ivt~~~~P-~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
||+|++..+.| ..||++..+..++++|.+.| |+|+++++........ .... . .....+ ...
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~~--~~~~------~---~~~~~~---~~~--- 62 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLD-PEEVLLLLPGAPGLLL--LPLR------A---ALRLLL---RLP--- 62 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcC-CceEEEEecCcccccc--ccch------h---cccccc---ccc---
Confidence 69999999988 89999999999999999998 9999998833111000 0000 0 000000 000
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHH
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
..................+...+||+||+++...... .....|++.++|+.+...........
T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~-------~~~~~~~i~~~hd~~~~~~~~~~~~~- 125 (365)
T cd03809 63 ---------RRLLWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAPLL-------RLRGVPVVVTIHDLIPLRFPEYFSPG- 125 (365)
T ss_pred ---------cccccchhhHHHHHHHHHhhhcCCCeeeecccccCcc-------cCCCCCEEEEeccchhhhCcccCCHH-
Confidence 0000011111122233445558899999998765511 12223899999976543322211111
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
.....+.......+. +|.++++|+..++.. ...+ ...+|++...+....... ........+.+.++|+|+
T Consensus 126 ~~~~~~~~~~~~~~~-~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~ 203 (365)
T cd03809 126 FRRYFRRLLRRALRR-ADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGT 203 (365)
T ss_pred HHHHHHHHHHHHHHH-cCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCC
Confidence 122333333333333 799999998877732 1222 233588887765433222 222334445788999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccCCC
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~~E 356 (562)
+.+.||++.+++++..+.+..++++|+++|.+.. ........++++.. +.+.+.. ++..++|+.+|++++||..|
T Consensus 204 ~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e 283 (365)
T cd03809 204 IEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYE 283 (365)
T ss_pred CccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhc
Confidence 9999999999999999998888899999998654 33333333444444 4555555 44559999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHH
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATE 428 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~ 428 (562)
++|++++|||++|+|||+++.++ .|++.+ +|+++ +|+++++++|.++++|++. .|+++++ ++|+|++.++
T Consensus 284 ~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~ 361 (365)
T cd03809 284 GFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTAR 361 (365)
T ss_pred cCCCCHHHHhcCCCcEEecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999987 888754 45544 5899999999999998886 7777764 8999999999
Q ss_pred HHHH
Q 008544 429 RFLQ 432 (562)
Q Consensus 429 ~~~~ 432 (562)
++++
T Consensus 362 ~~~~ 365 (365)
T cd03809 362 RTLD 365 (365)
T ss_pred HHhC
Confidence 8863
No 55
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=1.1e-28 Score=264.37 Aligned_cols=266 Identities=13% Similarity=0.106 Sum_probs=193.7
Q ss_pred hhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcC
Q 008544 155 EIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLS 233 (562)
Q Consensus 155 ~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 233 (562)
+.|...++||+|++.+....+. .+..+.. |++.++|..............+............. .+|.+|++|
T Consensus 205 ~~L~~~~~di~i~dr~~~~~~~----~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~~~~~~--~~D~iI~~S 278 (500)
T TIGR02918 205 KQLNLTKKDIIILDRSTGIGQA----VLENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQFSNAD--YIDFFITAT 278 (500)
T ss_pred HHHhCCCCCEEEEcCCcccchH----HHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHHHhchh--hCCEEEECC
Confidence 3345568999999887655322 1223323 78889997542211111111111111222222222 369999999
Q ss_pred hhhhccC----------CCc-cccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhc
Q 008544 234 AATQEYP----------NSI-VCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL 302 (562)
Q Consensus 234 ~~~~~~~----------~~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~ 302 (562)
+..++.. ... ....+|++...+.+. .......|+|+||+.+.||++.+++|+.++.++.
T Consensus 279 ~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~----------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~ 348 (500)
T TIGR02918 279 DIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE----------QERKPFSIITASRLAKEKHIDWLVKAVVKAKKSV 348 (500)
T ss_pred HHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc----------cccCCeEEEEEeccccccCHHHHHHHHHHHHhhC
Confidence 8765521 111 222346554333211 0112457999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC-C-
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S- 379 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~-~- 379 (562)
|+++|+|+|+|+..+.++++++++++...+ +.|..+..++|+.||++|+||..|+||++++||||||+|||+++.+ |
T Consensus 349 p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~ 428 (500)
T TIGR02918 349 PELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGN 428 (500)
T ss_pred CCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCC
Confidence 999999999999989999999998876444 5556788899999999999999999999999999999999999986 5
Q ss_pred ccccccCCceEeeC------C----HHHHHHHHHHHHhCCCC-CccHHHH---hcCCHHHHHHHHHHHHHh
Q 008544 380 NDFFKQFPNCRTYD------G----RNGFVEATLKALAEEPA-QPTDAQT---HQLSWESATERFLQVAEL 436 (562)
Q Consensus 380 ~e~v~~~~~g~~~~------d----~~~la~~i~~ll~~~~~-~l~~~ar---~~~sw~~~~~~~~~~y~~ 436 (562)
+|++.++.+|++++ | +++|+++|.++++++.. +|+++++ +.|+|+.+++++.++++.
T Consensus 429 ~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 429 PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVRE 499 (500)
T ss_pred HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 89999999999975 2 88999999999954333 7888777 899999999999998875
No 56
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=3.4e-27 Score=250.63 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=161.9
Q ss_pred hccEEEEcChhhhccCC------Ccc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHH
Q 008544 225 HCHKVIRLSAATQEYPN------SIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNI 297 (562)
Q Consensus 225 ~ad~vi~~S~~~~~~~~------~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~ 297 (562)
.+|.|++.|+.+++... +.+ +..+|+|.+.+.... ...+.+.+.++++||+.++||++.+|+|+.+
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~-------~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALP-------LERSEDPPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCC-------ccccCCCCEEEEEEeeeccCCHHHHHHHHHH
Confidence 48999999999887321 122 222466654332111 0111235789999999999999999999998
Q ss_pred HHHh----cCCcEEEEEeCCCC------HHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhcCEEEEccCCCCCcHHHH
Q 008544 298 YHKE----LAGLEMDLYGNGED------FDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDYKVFLNPSTTDVVCTATA 363 (562)
Q Consensus 298 l~~~----~~~~~l~ivG~g~~------~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~adv~v~pS~~E~~~~~~l 363 (562)
+.++ .|+++|+|+|+++. .++++++++++++. +.|.+.. ++..++|+.||++++||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 7653 47899999998742 25788889988876 4455554 455689999999999999999999999
Q ss_pred HHHHcCCcEEeeCCCC--cccccc---CCceEeeCCHHHHHHHHHHHHhCCC-C--CccHHHH---hcCCHHHHHHHHHH
Q 008544 364 EALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEP-A--QPTDAQT---HQLSWESATERFLQ 432 (562)
Q Consensus 364 EAma~G~PVI~t~~~~--~e~v~~---~~~g~~~~d~~~la~~i~~ll~~~~-~--~l~~~ar---~~~sw~~~~~~~~~ 432 (562)
||||||+|||+++.+| .|++.+ +.+|++++|+++++++|.+++++++ . +|+++++ ++|||+...+++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999987 477765 6789999999999999999998643 2 7887776 78999999999999
Q ss_pred HHHhcC
Q 008544 433 VAELVG 438 (562)
Q Consensus 433 ~y~~~~ 438 (562)
.|+...
T Consensus 453 ~i~~l~ 458 (463)
T PLN02949 453 AIRPIL 458 (463)
T ss_pred HHHHHH
Confidence 998765
No 57
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=251.37 Aligned_cols=349 Identities=11% Similarity=-0.012 Sum_probs=208.7
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCC---ceeCCchhhHHHHHHHhhhccC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGN---ITFASPKEQEAYVRWWLEDRTG 126 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~---i~~~~~~~~~~~~~~~~~~~~~ 126 (562)
|||+.|.+.. ..||++..+..+++.|.++| |+|.++........+ ..-++. .....+.. ..+. .....|..
T Consensus 1 mkil~i~~~l--~~GGaeri~~~L~~~l~~~G-~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 74 (405)
T PRK10125 1 MNILQFNVRL--AEGGAAGVALDLHQRALQQG-LASHFVYGYGKGGKE-SVSHQNYPQVIKHTPRM-TAMA-NIALFRLF 74 (405)
T ss_pred CeEEEEEeee--cCCchhHHHHHHHHHHHhcC-CeEEEEEecCCCccc-ccccCCcceEEEecccH-HHHH-HHHHHHhc
Confidence 6899998754 35888888899999999998 999999763211111 000000 00000000 0000 00000000
Q ss_pred CCCCcccccccccchhccchhhhHHhHHhhc-CcCCCcEEEecCCchh--hhhhchH-----HHHhhcCCEEEEEcCCcH
Q 008544 127 FTSTFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHL--TWFHHGK-----RWKAKFRFVVGIVHTNYL 198 (562)
Q Consensus 127 ~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i-~~~~pDvV~~~~~~~~--~~~~~~~-----~~~~~~~~vi~~~h~~~~ 198 (562)
. +........+.++| ++.+|||||+|..... +...... .+.....|+|.|.|+.+.
T Consensus 75 -----~-----------~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~ 138 (405)
T PRK10125 75 -----N-----------RDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWS 138 (405)
T ss_pred -----c-----------hhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccc
Confidence 0 01111233455656 5789999999986643 1110000 012222499999998864
Q ss_pred HH------------Hhh---------hhch--HHHHHHHHHHHHHHHHH--hccEEEEcChhhhcc-----CCCcc-ccc
Q 008544 199 EY------------VKR---------EKND--RLQAFLLEFVNSWLARV--HCHKVIRLSAATQEY-----PNSIV-CNV 247 (562)
Q Consensus 199 ~~------------~~~---------~~~~--~~~~~~~~~~~~~~~~~--~ad~vi~~S~~~~~~-----~~~~~-~~v 247 (562)
.. ... ++.. .........-.+.+... .++.+|++|+..++. ....+ +..
T Consensus 139 ~tg~c~~~~~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~ 218 (405)
T PRK10125 139 VTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN 218 (405)
T ss_pred cCCCcCCCcccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeC
Confidence 31 000 0000 00111111112222222 257899999888773 22233 334
Q ss_pred cccCCCCcCcchhhhHHhhcCCCCCccEEEEEeec--cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHh
Q 008544 248 HGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM--VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKK 325 (562)
Q Consensus 248 ~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~--~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~ 325 (562)
||||++.+.+..... ....+++.+.++++|+. .+.||++.+++|+..+. ++++|+++|.|+...
T Consensus 219 NGid~~~~~~~~~~~---~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~~L~ivG~g~~~~-------- 284 (405)
T PRK10125 219 NGIDMATEAILAELP---PVRETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DKIELHTFGKFSPFT-------- 284 (405)
T ss_pred CCcCccccccccccc---ccccCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CCeEEEEEcCCCccc--------
Confidence 699964322211110 01112346789999994 36799999999998763 479999999875321
Q ss_pred cCCeeEEeCCC---CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHH
Q 008544 326 LKLVVRVYPGR---DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 399 (562)
Q Consensus 326 l~l~~~~~~~~---~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la 399 (562)
...+.+++.. .+..++|+.+|+||+||..|+||++++||||||+|||+|+.|| +|++.++ +|++++ |+++|+
T Consensus 285 -~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La 362 (405)
T PRK10125 285 -AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLA 362 (405)
T ss_pred -ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHH
Confidence 1134444433 3445889999999999999999999999999999999999998 8888764 899985 999999
Q ss_pred HHHHHHHhCCCC-CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 400 EATLKALAEEPA-QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 400 ~~i~~ll~~~~~-~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
+.+...+.+... .+.++++ ++|||+.++++++++|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 363 QLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred hccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 865443332211 1112222 789999999999999975
No 58
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.96 E-value=4.2e-28 Score=256.58 Aligned_cols=260 Identities=15% Similarity=0.043 Sum_probs=180.7
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcH--HHHhhh--h------------ch--HHHHHHHHHHHHH
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYL--EYVKRE--K------------ND--RLQAFLLEFVNSW 220 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~--~~~~~~--~------------~~--~~~~~~~~~~~~~ 220 (562)
+.+|||++.+......+. ...+..+ .|++.++|.... +..... + .+ .+.+.+...+..+
T Consensus 105 ~~~pDv~i~~~g~~~~~~--~~~~~~~-~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~~~ 181 (419)
T cd03806 105 KLVPDIFIDTMGYPFTYP--LVRLLGG-CPVGAYVHYPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLFAF 181 (419)
T ss_pred hcCCCEEEEcCCcccHHH--HHHHhcC-CeEEEEecCCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHHHH
Confidence 457999998875555333 1222221 389999993210 221110 0 01 1222222222222
Q ss_pred HHHH---hccEEEEcChhhhccCC----C--cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHH
Q 008544 221 LARV---HCHKVIRLSAATQEYPN----S--IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE 290 (562)
Q Consensus 221 ~~~~---~ad~vi~~S~~~~~~~~----~--~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ 290 (562)
+.+. .||.++++|+.+++... . .+ +..+|+|.+.+.+... ......+.++|+||+.+.||++.
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~-------~~~~~~~~il~vgr~~~~K~~~~ 254 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL-------DEKTRENQILSIAQFRPEKNHPL 254 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc-------ccccCCcEEEEEEeecCCCCHHH
Confidence 2222 49999999988887321 1 22 2235777655443211 11233578999999999999999
Q ss_pred HHHHHHHHHHhcCC-----cEEEEEeCCCC------HHHHHHHHHhcCCe--eEEeCC--CCChHHHHhhcCEEEEccCC
Q 008544 291 LLGLLNIYHKELAG-----LEMDLYGNGED------FDQIQRAAKKLKLV--VRVYPG--RDHADPIFHDYKVFLNPSTT 355 (562)
Q Consensus 291 ll~a~~~l~~~~~~-----~~l~ivG~g~~------~~~l~~~~~~l~l~--~~~~~~--~~~~~~l~~~adv~v~pS~~ 355 (562)
+++|+.++.+..|+ ++|+|+|++.. .++++++++++++. +.|.+. .++..++|+.||++++||..
T Consensus 255 li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~ 334 (419)
T cd03806 255 QLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWN 334 (419)
T ss_pred HHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCcc
Confidence 99999999887654 99999998742 36788888888875 445554 34555999999999999999
Q ss_pred CCCcHHHHHHHHcCCcEEeeCCCC--ccccc---cCCceEeeCCHHHHHHHHHHHHhCCCC---CccHHHH---hcCCHH
Q 008544 356 DVVCTATAEALAMGKIVVCANHPS--NDFFK---QFPNCRTYDGRNGFVEATLKALAEEPA---QPTDAQT---HQLSWE 424 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~~~--~e~v~---~~~~g~~~~d~~~la~~i~~ll~~~~~---~l~~~ar---~~~sw~ 424 (562)
|+||++++||||||+|||+++.++ .+++. ++.+|++++|+++++++|.+++++++. .++++++ ++|||+
T Consensus 335 E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~ 414 (419)
T cd03806 335 EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDE 414 (419)
T ss_pred CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHH
Confidence 999999999999999999999876 57887 899999999999999999999998764 3433333 789998
Q ss_pred HHHH
Q 008544 425 SATE 428 (562)
Q Consensus 425 ~~~~ 428 (562)
...+
T Consensus 415 ~f~~ 418 (419)
T cd03806 415 EFER 418 (419)
T ss_pred Hhcc
Confidence 7653
No 59
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.96 E-value=1.5e-27 Score=243.88 Aligned_cols=318 Identities=17% Similarity=0.151 Sum_probs=218.0
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||++++..+. .+|++.....++++|.+.| |+|++++......... .. . .. .. . .....
T Consensus 1 kIl~~~~~~~--~gG~~~~~~~l~~~l~~~g-~~v~v~~~~~~~~~~~--~~------~-~~--~~---~--~~~~~--- 58 (353)
T cd03811 1 KILFVIPSLG--GGGAERVLLNLANGLDKRG-YDVTLVVLRDEGDYLE--LL------P-SN--VK---L--IPVRV--- 58 (353)
T ss_pred CeEEEeeccc--CCCcchhHHHHHHHHHhcC-ceEEEEEcCCCCcccc--cc------c-cc--hh---h--hceee---
Confidence 6899998774 6888888999999999888 9999998733111000 00 0 00 00 0 00000
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhh-cCCEEEEEcCCcHHHHhhhhchHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK-FRFVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
... ...........+.+.+++.+||+||++.. ...++ ...+..+ ..|.+.++|+.+.........
T Consensus 59 --~~~------~~~~~~~~~~~~~~~~~~~~~dii~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--- 124 (353)
T cd03811 59 --LKL------KSLRDLLAILRLRRLLRKEKPDVVISHLT-TTPNV--LALLAARLGTKLIVWEHNSLSLELKRKLR--- 124 (353)
T ss_pred --eec------ccccchhHHHHHHHHHHhcCCCEEEEcCc-cchhH--HHHHHhhcCCceEEEEcCcchhhhccchh---
Confidence 000 00111112345777888889999999987 22122 1122222 248999999776543321111
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
.. .+...... .+|.++++|+..++.. ...+ ...+|++...+.+...... ......+...++|+|+
T Consensus 125 ---~~-~~~~~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~ 197 (353)
T cd03811 125 ---LL-LLIRKLYR-RADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGR 197 (353)
T ss_pred ---HH-HHHHhhcc-ccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEec
Confidence 00 12222222 3799999998887732 2222 3335888776654332211 2233455788999999
Q ss_pred ccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCc
Q 008544 282 MVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVC 359 (562)
Q Consensus 282 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~ 359 (562)
+.+.||++.+++++..+..+.++++|+++|.++..+.+++.++++++. +.+.+..++..++++.+|++++||..|++|
T Consensus 198 ~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~ 277 (353)
T cd03811 198 LSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFP 277 (353)
T ss_pred chhhcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCC
Confidence 999999999999999998888899999999999888888888888765 445677888889999999999999999999
Q ss_pred HHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHH---HHHHHHHHhCCCC
Q 008544 360 TATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGF---VEATLKALAEEPA 411 (562)
Q Consensus 360 ~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~l---a~~i~~ll~~~~~ 411 (562)
++++|||+||+|||+++.++ .|++.++.+|++++ |++++ ++++.++.+++..
T Consensus 278 ~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~ 335 (353)
T cd03811 278 NVLLEAMALGTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPEL 335 (353)
T ss_pred cHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHH
Confidence 99999999999999999998 89999999999984 78888 5555555555443
No 60
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.5e-27 Score=248.98 Aligned_cols=244 Identities=10% Similarity=0.031 Sum_probs=172.1
Q ss_pred cCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhh-hhchHHHHHHHHHHHHHHHHHhccEEEEcCh
Q 008544 157 IPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR-EKNDRLQAFLLEFVNSWLARVHCHKVIRLSA 234 (562)
Q Consensus 157 i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 234 (562)
++..+||+||++++........+...++..+ |++.++|+.+...... .........+.+.+.+++.+. +|.++++|+
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-ad~ii~~S~ 174 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKM-ADGHLCVTK 174 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhh-CCEEEECCH
Confidence 3567999999998765422111222333333 8888999753211110 011222334555566666665 899999999
Q ss_pred hhhccCCCc----cccc-cccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHH----------
Q 008544 235 ATQEYPNSI----VCNV-HGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYH---------- 299 (562)
Q Consensus 235 ~~~~~~~~~----~~~v-~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~---------- 299 (562)
.+++...+. +..+ +| +.+.|.+.... .... .+...+++++|++.+.||++.+++|+..+.
T Consensus 175 ~~~~~l~~~~g~~i~vi~n~-~~~~f~~~~~~---~~~~-~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~ 249 (371)
T PLN02275 175 AMQHELDQNWGIRATVLYDQ-PPEFFRPASLE---IRLR-PNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNES 249 (371)
T ss_pred HHHHHHHHhcCCCeEEECCC-CHHHcCcCCch---hccc-CCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccc
Confidence 987743211 2222 34 33333332211 0111 122456789999999999999999998874
Q ss_pred -------HhcCCcEEEEEeCCCCHHHHHHHHHhcCCee-EEeCC---CCChHHHHhhcCEEEEcc---CCCCCcHHHHHH
Q 008544 300 -------KELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPG---RDHADPIFHDYKVFLNPS---TTDVVCTATAEA 365 (562)
Q Consensus 300 -------~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~-~~~~~---~~~~~~l~~~adv~v~pS---~~E~~~~~~lEA 365 (562)
++.|+++|+++|+|+.++++++.+++++++. .++++ .++..++|+.+|++|+|+ ..|++|++++||
T Consensus 250 ~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEA 329 (371)
T PLN02275 250 DSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDM 329 (371)
T ss_pred cccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHH
Confidence 2358999999999999999999999998874 44554 456668999999999863 248899999999
Q ss_pred HHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHH
Q 008544 366 LAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKAL 406 (562)
Q Consensus 366 ma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll 406 (562)
||||+|||+++.++ .|++.++.+|++++|+++++++|.+++
T Consensus 330 mA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 330 FGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 99999999999987 999999999999999999999998864
No 61
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=5.3e-26 Score=240.00 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=184.6
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHhhcC-C-EEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhh
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT 236 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~-vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 236 (562)
+.++|++|++........ ...+.++.. + +|.+.|.... +...... ....+.+.+.+ .+|.++++|+..
T Consensus 125 ~~~~~v~~sy~~~~~~~~--~~~l~~~~~~~~~i~~~Hg~d~-~~~~~~~------~~~~~~~~~~~-~~d~ii~~S~~~ 194 (407)
T cd04946 125 DGQGTVFYSYWLHETAYA--LALLKKEYLRKRVISRAHGYDL-YEDRYPS------GYIPLRRYLLS-SLDAVFPCSEQG 194 (407)
T ss_pred ccCceEEEEecCchHHHH--HHHHHHhcCCceEEEEeccchh-hhhhccc------cchHHHHHHHh-cCCEEEECCHHH
Confidence 456788887665554322 233455544 3 7999995422 2211111 01112222222 279999999888
Q ss_pred hccCC-------Ccc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcC--CcE
Q 008544 237 QEYPN-------SIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELA--GLE 306 (562)
Q Consensus 237 ~~~~~-------~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~--~~~ 306 (562)
+++.. ..+ +..+|++...+.+. ...++.+.++++|++.+.||++.+++++..+.+..| +++
T Consensus 195 ~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~---------~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~ 265 (407)
T cd04946 195 RNYLQKRYPAYKEKIKVSYLGVSDPGIISK---------PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIK 265 (407)
T ss_pred HHHHHHHCCCccccEEEEECCcccccccCC---------CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEE
Confidence 77422 122 22357776544321 112346789999999999999999999999988876 467
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCCh--HHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-
Q 008544 307 MDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHA--DPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 379 (562)
Q Consensus 307 l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~--~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~- 379 (562)
++++|+|++.+.+++.+++++.+ +.+.|..++. .++|+. +|+|++||..||+|++++||||||+|||+|+.||
T Consensus 266 ~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~ 345 (407)
T cd04946 266 WTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGT 345 (407)
T ss_pred EEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCc
Confidence 78899999989999998876655 4445555543 377764 7899999999999999999999999999999998
Q ss_pred ccccccCCceEeeC---CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHH
Q 008544 380 NDFFKQFPNCRTYD---GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFL 431 (562)
Q Consensus 380 ~e~v~~~~~g~~~~---d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~ 431 (562)
.|++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|+|+...+++.
T Consensus 346 ~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 346 PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999998998863 789999999999998776 8888888 8999999998875
No 62
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.95 E-value=8.1e-26 Score=234.18 Aligned_cols=252 Identities=14% Similarity=0.118 Sum_probs=174.9
Q ss_pred HHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcH-------HHHhhhhc--hHHHHHHHHHHHHHHHH
Q 008544 153 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYL-------EYVKREKN--DRLQAFLLEFVNSWLAR 223 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~ 223 (562)
+.+.+...++|+|++++......+ ......+.+.++|+... .+....+. ......+.+.+..+..+
T Consensus 75 ~~~~~~~~~~D~v~~~~~~~~~~~-----~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (351)
T cd03804 75 AIEQFDLSGYDLVISSSHAVAKGV-----ITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRR 149 (351)
T ss_pred HHHhccccCCCEEEEcCcHHhccc-----cCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 444566778999998775333111 11222377888886421 12111111 00001122222222221
Q ss_pred H--hccEEEEcChhhhccC-----CCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHH
Q 008544 224 V--HCHKVIRLSAATQEYP-----NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLN 296 (562)
Q Consensus 224 ~--~ad~vi~~S~~~~~~~-----~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~ 296 (562)
. .+|.++++|+.+++.. .+..+..+|+|.+.+.+.. ...+.++|+|++.+.||++.+++++.
T Consensus 150 ~~~~~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~-----------~~~~~il~~G~~~~~K~~~~li~a~~ 218 (351)
T cd03804 150 SAARVDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE-----------EKEDYYLSVGRLVPYKRIDLAIEAFN 218 (351)
T ss_pred HhcCCCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC-----------CCCCEEEEEEcCccccChHHHHHHHH
Confidence 1 4899999999887743 2222233577766554321 12457899999999999999999996
Q ss_pred HHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCC--hHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEe
Q 008544 297 IYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDH--ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 297 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~--~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
.+ + ++|+++|+|++.+.+++ ....++.+++..++ ..++|+.||++++||. |+||++++||||||+|||+
T Consensus 219 ~~----~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~ 289 (351)
T cd03804 219 KL----G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIA 289 (351)
T ss_pred HC----C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEE
Confidence 54 3 88999999988777766 33445777777655 5589999999999999 9999999999999999999
Q ss_pred eCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCC-C--CccHHHHhcCCHHHHHHHH
Q 008544 375 ANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEP-A--QPTDAQTHQLSWESATERF 430 (562)
Q Consensus 375 t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~-~--~l~~~ar~~~sw~~~~~~~ 430 (562)
++.++ .|++.++.+|+++ +|+++++++|.++++++. . .+++++ ++|+|+...+++
T Consensus 290 ~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 350 (351)
T cd03804 290 YGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHA-ERFSESRFREKI 350 (351)
T ss_pred eCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHH-HhcCHHHHHHHh
Confidence 99987 9999999999987 489999999999999884 2 333222 679999998875
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.94 E-value=7.4e-26 Score=236.32 Aligned_cols=257 Identities=17% Similarity=0.179 Sum_probs=190.6
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHh-hcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhh
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKA-KFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQ 237 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~-~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 237 (562)
..++|+++++.+....+. .+.. +..+.+.++|+.............++ ...+.+...+.+ +|.+++.|+..+
T Consensus 97 ~~~~diii~~~~~~~~~~----~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~d~ii~~s~~~~ 169 (372)
T cd04949 97 DTKPDVFILDRPTLDGQA----LLNMKKAAKVVVVLHSNHVSDNNDPVHSLIN-NFYEYVFENLDK--VDGVIVATEQQK 169 (372)
T ss_pred CCCCCEEEECCccccchh----HHhccCCceEEEEEChHHhCCcccccccccc-hhhHHHHhChhh--CCEEEEccHHHH
Confidence 478999999988766431 1222 22267888996532211110011111 122222233334 699999998877
Q ss_pred ccC-----CC-cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEE
Q 008544 238 EYP-----NS-IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLY 310 (562)
Q Consensus 238 ~~~-----~~-~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~iv 310 (562)
+.. .. .+ ...+|++...+.+.. ........++++|++.++||++.+++++.++.++.|+++|+++
T Consensus 170 ~~l~~~~~~~~~v~~ip~g~~~~~~~~~~--------~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~ 241 (372)
T cd04949 170 QDLQKQFGNYNPIYTIPVGSIDPLKLPAQ--------FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIY 241 (372)
T ss_pred HHHHHHhCCCCceEEEcccccChhhcccc--------hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 621 11 12 233477765544321 0112256799999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC-C-ccccccC
Q 008544 311 GNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S-NDFFKQF 386 (562)
Q Consensus 311 G~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~-~-~e~v~~~ 386 (562)
|.|+....++..++++++. +.+.+..++..++|+.||++|+||..|+||++++|||+||+|||+++.+ + .+++.++
T Consensus 242 G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~ 321 (372)
T cd04949 242 GYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDG 321 (372)
T ss_pred EeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccC
Confidence 9999888888888887765 4445667788899999999999999999999999999999999999987 5 8999999
Q ss_pred CceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHH
Q 008544 387 PNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERF 430 (562)
Q Consensus 387 ~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~ 430 (562)
.+|++++ |+++++++|.++++++.. .|+++++ ++|+|+++++++
T Consensus 322 ~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 322 ENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 9999986 999999999999999865 7887777 899999998763
No 64
>PHA01630 putative group 1 glycosyl transferase
Probab=99.93 E-value=7.8e-25 Score=223.42 Aligned_cols=221 Identities=13% Similarity=0.078 Sum_probs=162.1
Q ss_pred CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcch
Q 008544 188 FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGE 259 (562)
Q Consensus 188 ~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~ 259 (562)
|+++++|+.+ ++...+..+.....+|.++++|+.+++.. .+.+ +..||||.+.|.+..
T Consensus 71 ~~v~e~~~~~--------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~ 136 (331)
T PHA01630 71 NIVFEVADTD--------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKP 136 (331)
T ss_pred ceEEEEEeec--------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCc
Confidence 7888888621 12223333341223799999998888732 1222 334799987775432
Q ss_pred hhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCee-EEeCCCCC
Q 008544 260 KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPGRDH 338 (562)
Q Consensus 260 ~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~-~~~~~~~~ 338 (562)
.. .....+++++|++.++||++.+++|++.+.++.++++++++|++.....+. ++.. ......++
T Consensus 137 ~~--------~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~------~~~~~~~~v~~~~ 202 (331)
T PHA01630 137 KE--------KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLF------GLNGVKTPLPDDD 202 (331)
T ss_pred cc--------cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhc------cccceeccCCHHH
Confidence 11 122446667788899999999999999998888899999999765433221 2211 11234566
Q ss_pred hHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee---------------------CCHH
Q 008544 339 ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY---------------------DGRN 396 (562)
Q Consensus 339 ~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~---------------------~d~~ 396 (562)
..++|+.||+||+||..|+||++++||||||+|||+|+.++ .|++.++.+|+++ +|.+
T Consensus 203 l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~ 282 (331)
T PHA01630 203 IYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIE 282 (331)
T ss_pred HHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHH
Confidence 77999999999999999999999999999999999999998 8999998887664 2788
Q ss_pred HHHHHHHHHHhCC--CC---CccHHHH---hcCCHHHHHHHHHHHHHh
Q 008544 397 GFVEATLKALAEE--PA---QPTDAQT---HQLSWESATERFLQVAEL 436 (562)
Q Consensus 397 ~la~~i~~ll~~~--~~---~l~~~ar---~~~sw~~~~~~~~~~y~~ 436 (562)
++++++.+++.++ +. .+..+++ ++|||++++++++++|+.
T Consensus 283 ~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 283 DAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999885 22 2333333 899999999999999974
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.92 E-value=2.8e-23 Score=209.78 Aligned_cols=221 Identities=18% Similarity=0.183 Sum_probs=158.8
Q ss_pred CCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCC-----CccccccccCCCCcCcchh-
Q 008544 187 RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPN-----SIVCNVHGVNPKFLEIGEK- 260 (562)
Q Consensus 187 ~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~-----~~~~~v~GVd~~~~~~~~~- 260 (562)
++.+.++|..+.. +..++++.+. +.+|++|+.+++... ..+..++|+|.+.|.+...
T Consensus 71 ~~~~tt~~g~~~~---------------~~y~~~m~~~--~~vIavS~~t~~~L~~~G~~~~i~I~~GVD~~~f~p~~~~ 133 (335)
T PHA01633 71 KYFYTTCDGIPNI---------------EIVNKYLLQD--VKFIPNSKFSAENLQEVGLQVDLPVFHGINFKIVENAEKL 133 (335)
T ss_pred CceEEeeCCcCch---------------HHHHHHHhcC--CEEEeCCHHHHHHHHHhCCCCceeeeCCCChhhcCccchh
Confidence 5788888866531 2234555664 899999988887321 1233457999988776432
Q ss_pred -hhHHhhcCCC-CCccEEEEEeeccccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCCCHHHHHHHHHhcCC--eeEE
Q 008544 261 -KMEQQQNGNK-AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGEDFDQIQRAAKKLKL--VVRV 332 (562)
Q Consensus 261 -~~~~~~~~~~-~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~~~~~l~~~~~~l~l--~~~~ 332 (562)
...++..+.. ++.+.++++||+.++||++.+++|+..+.++.|+ ++++++|.+ .+ +++++ .+++
T Consensus 134 ~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~----~~l~l~~~V~f 205 (335)
T PHA01633 134 VPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QF----TQLEVPANVHF 205 (335)
T ss_pred hHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HH----HHcCCCCcEEE
Confidence 1222333322 3567899999999999999999999999888775 578777741 22 33333 3555
Q ss_pred eC--C---CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-cccccc------------------CCc
Q 008544 333 YP--G---RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQ------------------FPN 388 (562)
Q Consensus 333 ~~--~---~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~------------------~~~ 388 (562)
.+ + .++..++|+.+|+||+||..|+||++++||||||+|||+++.++ .|++.+ ...
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 54 2 23456999999999999999999999999999999999999987 665431 234
Q ss_pred eEeeC--CHHHHHHHHHHHHhCCCC-CccHHHH---hcCCHHHHHHHHHH
Q 008544 389 CRTYD--GRNGFVEATLKALAEEPA-QPTDAQT---HQLSWESATERFLQ 432 (562)
Q Consensus 389 g~~~~--d~~~la~~i~~ll~~~~~-~l~~~ar---~~~sw~~~~~~~~~ 432 (562)
||.++ |+++++++|..+++..+. ..+.+++ ++|+|+++.+++++
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcCHHHHHHHhhC
Confidence 66654 999999999999766543 3344444 99999999998864
No 66
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=1.3e-21 Score=203.21 Aligned_cols=331 Identities=14% Similarity=0.087 Sum_probs=206.8
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-CCceeCCchhhHHHHHHHhhhccCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
|||+|++... +|.......++++|.++| |+|++++..... ... .+. .++.+.. ...
T Consensus 2 ~~i~i~~~g~----gG~~~~~~~la~~L~~~g-~ev~vv~~~~~~-~~~-~~~~~g~~~~~---------------~~~- 58 (357)
T PRK00726 2 KKILLAGGGT----GGHVFPALALAEELKKRG-WEVLYLGTARGM-EAR-LVPKAGIEFHF---------------IPS- 58 (357)
T ss_pred cEEEEEcCcc----hHhhhHHHHHHHHHHhCC-CEEEEEECCCch-hhh-ccccCCCcEEE---------------Eec-
Confidence 6888886533 565555679999999998 999999873210 000 011 0111100 000
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhch
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~ 207 (562)
+...-.....+..........+..+.+++++.+||+||++++... +. +....+..+ |++.+.|+.+..
T Consensus 59 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~~-------- 127 (357)
T PRK00726 59 GGLRRKGSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVS-GP--GGLAARLLGIPLVIHEQNAVPG-------- 127 (357)
T ss_pred cCcCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcch-hH--HHHHHHHcCCCEEEEcCCCCcc--------
Confidence 000000000000001111223456778888999999999985443 22 222233333 777655532211
Q ss_pred HHHHHHHHHHHHHHHHHhccEEEEcChhhhc-cCCCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeecccc
Q 008544 208 RLQAFLLEFVNSWLARVHCHKVIRLSAATQE-YPNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 285 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~-~~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 285 (562)
...+++.+. +|.+++.++.... .+...+ +..||++.+.+.+.. .....+.+++.++++++|+....
T Consensus 128 --------~~~r~~~~~-~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~---~~~~~~~~~~~~~i~~~gg~~~~ 195 (357)
T PRK00726 128 --------LANKLLARF-AKKVATAFPGAFPEFFKPKAVVTGNPVREEILALAA---PPARLAGREGKPTLLVVGGSQGA 195 (357)
T ss_pred --------HHHHHHHHH-hchheECchhhhhccCCCCEEEECCCCChHhhcccc---hhhhccCCCCCeEEEEECCcHhH
Confidence 123334443 7999988864421 222233 334688876654322 12233445557788899988888
Q ss_pred CCHHHHH-HHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHH
Q 008544 286 KGYEELL-GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAE 364 (562)
Q Consensus 286 Kg~~~ll-~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE 364 (562)
|+...++ +|+.++.+. + ..++++|.|+. +.+.+..+ +++++.+.+..++..++|+.+|+++.+| .+.+++|
T Consensus 196 ~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~----g~~~~~E 267 (357)
T PRK00726 196 RVLNEAVPEALALLPEA-L-QVIHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA----GASTVAE 267 (357)
T ss_pred HHHHHHHHHHHHHhhhC-c-EEEEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC----CHHHHHH
Confidence 8876555 888887654 3 56778899864 45555556 7777666676778889999999999876 2689999
Q ss_pred HHHcCCcEEeeCCCC---------ccccccCCceEeeC--C--HHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHH
Q 008544 365 ALAMGKIVVCANHPS---------NDFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT---HQLSWESA 426 (562)
Q Consensus 365 Ama~G~PVI~t~~~~---------~e~v~~~~~g~~~~--d--~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~ 426 (562)
||+||+|||++..++ .+.+.+..+|++++ | +++++++|.++++|++. .|+++++ +.++-+.+
T Consensus 268 a~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (357)
T PRK00726 268 LAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERL 347 (357)
T ss_pred HHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHH
Confidence 999999999997642 24677778888873 5 99999999999999876 7888777 56777777
Q ss_pred HHHHHHHH
Q 008544 427 TERFLQVA 434 (562)
Q Consensus 427 ~~~~~~~y 434 (562)
++.+.+..
T Consensus 348 ~~~~~~~~ 355 (357)
T PRK00726 348 ADLIEELA 355 (357)
T ss_pred HHHHHHHh
Confidence 77776654
No 67
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=2e-21 Score=201.15 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=165.9
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+++++.+||+||++++... +. +...++..+ |++...|+.+.. ...+++.+. +|.
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~~-~~--~~~~a~~~~~p~v~~~~~~~~~----------------~~~~~~~~~-~~~ 137 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVS-GP--VGLAAKLLGIPLVIHEQNAVPG----------------LANRLLARF-ADR 137 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcc-hH--HHHHHHHhCCCEEEEcCCCCcc----------------HHHHHHHHh-hCE
Confidence 345677788899999999986543 22 222334433 666544432211 112333343 799
Q ss_pred EEEcChhhhcc-CCCcc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHH-HHHHHHHHHHhcCCc
Q 008544 229 VIRLSAATQEY-PNSIV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHKELAGL 305 (562)
Q Consensus 229 vi~~S~~~~~~-~~~~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~~~~~~ 305 (562)
++++|+..++. +...+ ...+|++.+.+.+... +...+.+++.++++++|+....|+... +++++..+.+ +++
T Consensus 138 vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~--~~~ 212 (350)
T cd03785 138 VALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR--KRL 212 (350)
T ss_pred EEEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--cCe
Confidence 99999888874 33333 3346888776553221 444566666778888887777777765 4588877763 356
Q ss_pred E-EEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----
Q 008544 306 E-MDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS----- 379 (562)
Q Consensus 306 ~-l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~----- 379 (562)
+ ++++|.| +.+++++.+++++.++.+.+..++..++|+.||++|.+|- +++++|||++|+|||+++.++
T Consensus 213 ~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 213 QVIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred EEEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 6 4577887 6677888877765456677777788899999999998762 689999999999999987542
Q ss_pred ----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 380 ----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 380 ----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
.+.+.+..+|++++ |+++++++|.+++++++. +|+++++
T Consensus 288 ~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 288 QTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35677778888874 799999999999987664 6777776
No 68
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.88 E-value=1.5e-21 Score=204.60 Aligned_cols=341 Identities=12% Similarity=0.075 Sum_probs=207.5
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHH-----Hhhhc
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRW-----WLEDR 124 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~-----~~~~~ 124 (562)
+||+|+|..+ .+|.......+++.|.++| |+|.++++.+... .| .+ .......|... ++-..
T Consensus 5 ~rili~t~~~---G~GH~~~a~al~~~l~~~g-~~~~~~~d~~~~~-----~~-~~---~~~~~~~y~~~~~~~~~~~~~ 71 (380)
T PRK13609 5 PKVLILTAHY---GNGHVQVAKTLEQTFRQKG-IKDVIVCDLFGES-----HP-VI---TEITKYLYLKSYTIGKELYRL 71 (380)
T ss_pred CeEEEEEcCC---CchHHHHHHHHHHHHHhcC-CCcEEEEEhHHhc-----ch-HH---HHHHHHHHHHHHHHhHHHHHH
Confidence 7999999887 3455555667889999998 8877776633110 11 00 00000001000 00000
Q ss_pred cCCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhh
Q 008544 125 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR 203 (562)
Q Consensus 125 ~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~ 203 (562)
..... ..+ +..+ ............+.+++++.+||+||++.+... +. ........+ |++..++ ++...
T Consensus 72 ~~~~~-~~~--~~~~-~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~--~~-~~~~~~~~~ip~~~~~t-d~~~~--- 140 (380)
T PRK13609 72 FYYGV-EKI--YDKK-IFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA--VP-ELKKQTGISIPTYNVLT-DFCLH--- 140 (380)
T ss_pred HHhcc-Ccc--cchH-HHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH--HH-HHHHhcCCCCCeEEEeC-CCCCC---
Confidence 00000 000 0000 000111112456888999999999999877543 21 111122223 6654333 32110
Q ss_pred hhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCccccccccCC--CCcCcchhhhHHhhcCCCCCccE
Q 008544 204 EKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNVHGVNP--KFLEIGEKKMEQQQNGNKAFTKG 275 (562)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~v~GVd~--~~~~~~~~~~~~~~~~~~~~~~~ 275 (562)
..|+.+ .+|.+++.|+..++.. .+.+. +.|++. .+..+......+...+++++.++
T Consensus 141 --------------~~~~~~-~ad~i~~~s~~~~~~l~~~gi~~~ki~-v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~ 204 (380)
T PRK13609 141 --------------KIWVHR-EVDRYFVATDHVKKVLVDIGVPPEQVV-ETGIPIRSSFELKINPDIIYNKYQLCPNKKI 204 (380)
T ss_pred --------------cccccC-CCCEEEECCHHHHHHHHHcCCChhHEE-EECcccChHHcCcCCHHHHHHHcCCCCCCcE
Confidence 112333 3799999998887742 22222 234443 22222222234455666655554
Q ss_pred -EEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CC-CHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEc
Q 008544 276 -AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GE-DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNP 352 (562)
Q Consensus 276 -il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~-~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~p 352 (562)
+++.|+....|+++.+++++.+ .++++++++|+ ++ ..+.+++.++.++.++.+++..++..++|+.||++|.
T Consensus 205 il~~~G~~~~~k~~~~li~~l~~----~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~- 279 (380)
T PRK13609 205 LLIMAGAHGVLGNVKELCQSLMS----VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT- 279 (380)
T ss_pred EEEEcCCCCCCcCHHHHHHHHhh----CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe-
Confidence 5566888888999999988742 36899988754 22 3577777777666557778777788899999999884
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeC-CCCc-----cccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH---hcC
Q 008544 353 STTDVVCTATAEALAMGKIVVCAN-HPSN-----DFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQL 421 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~-~~~~-----e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~ 421 (562)
++.|++++|||+||+|||+++ .++. +++.+...++...|+++++++|.++++|++. +|+++++ ..+
T Consensus 280 ---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~ 356 (380)
T PRK13609 280 ---KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPE 356 (380)
T ss_pred ---CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCc
Confidence 456899999999999999986 4442 2444444555567999999999999998775 7877776 668
Q ss_pred CHHHHHHHHHHHHHhcC
Q 008544 422 SWESATERFLQVAELVG 438 (562)
Q Consensus 422 sw~~~~~~~~~~y~~~~ 438 (562)
+++.+++.+++.++...
T Consensus 357 s~~~i~~~i~~~~~~~~ 373 (380)
T PRK13609 357 PADHIVDDILAENHVEP 373 (380)
T ss_pred hHHHHHHHHHHhhhhhh
Confidence 99999999998876554
No 69
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.87 E-value=8.5e-21 Score=199.75 Aligned_cols=281 Identities=14% Similarity=0.123 Sum_probs=171.6
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHh-h-cC-CEEEEEcCCcHHHHhhhhchHH----H-----------HHH
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKA-K-FR-FVVGIVHTNYLEYVKREKNDRL----Q-----------AFL 213 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~-~-~~-~vi~~~h~~~~~~~~~~~~~~~----~-----------~~~ 213 (562)
.+.+.+...++||+|+|+.... + +....+ . .. |.|.|+|.....-.-..+...+ . ...
T Consensus 139 ~~~~~~~~~~~dViH~HeWm~g--~--a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~ 214 (590)
T cd03793 139 EFAEQFDDEPAVVAHFHEWQAG--V--GLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIY 214 (590)
T ss_pred HHHhhccCCCCeEEEEcchhHh--H--HHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccch
Confidence 3444434467999999987655 2 222333 2 22 7999999552111000000000 0 001
Q ss_pred HHH-HHHHHHHHhccEEEEcChhhhc----c---CCCccccccccCCCCcCcchhh-----------------hHHhhcC
Q 008544 214 LEF-VNSWLARVHCHKVIRLSAATQE----Y---PNSIVCNVHGVNPKFLEIGEKK-----------------MEQQQNG 268 (562)
Q Consensus 214 ~~~-~~~~~~~~~ad~vi~~S~~~~~----~---~~~~~~~v~GVd~~~~~~~~~~-----------------~~~~~~~ 268 (562)
.+. +.+.... .||.++++|+.++. + +.. .+..||+|++.|.+.... ......+
T Consensus 215 ~r~~iE~~aa~-~Ad~fttVS~it~~E~~~Ll~~~pd-~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~ 292 (590)
T cd03793 215 HRYCIERAAAH-CAHVFTTVSEITAYEAEHLLKRKPD-VVLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYD 292 (590)
T ss_pred HHHHHHHHHHh-hCCEEEECChHHHHHHHHHhCCCCC-EEeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcC
Confidence 111 2333333 49999999988877 2 222 356689999888654311 0122245
Q ss_pred CCCCccEEEE-Eeeccc-cCCHHHHHHHHHHHHHh----cCC---cEEEEEeCCCC------------HHHHHHHH----
Q 008544 269 NKAFTKGAYY-IGRMVW-SKGYEELLGLLNIYHKE----LAG---LEMDLYGNGED------------FDQIQRAA---- 323 (562)
Q Consensus 269 ~~~~~~~il~-vGr~~~-~Kg~~~ll~a~~~l~~~----~~~---~~l~ivG~g~~------------~~~l~~~~---- 323 (562)
.++++++++| +||+.. .||++.+|+|++++... ..+ +-|+++-.+-. .+++++.+
T Consensus 293 ~~~d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~ 372 (590)
T cd03793 293 FDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVK 372 (590)
T ss_pred CCCCCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHH
Confidence 5556677777 799998 99999999999999663 223 23333322200 11111111
Q ss_pred ---------------------------------------------------------------HhcCC------eeEE-e
Q 008544 324 ---------------------------------------------------------------KKLKL------VVRV-Y 333 (562)
Q Consensus 324 ---------------------------------------------------------------~~l~l------~~~~-~ 333 (562)
+++++ .+.+ |
T Consensus 373 ~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif 452 (590)
T cd03793 373 EKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVF 452 (590)
T ss_pred HHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEE
Confidence 11111 1222 2
Q ss_pred -CC---------CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC--CceEee----
Q 008544 334 -PG---------RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF--PNCRTY---- 392 (562)
Q Consensus 334 -~~---------~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~--~~g~~~---- 392 (562)
+. -.+..++++.||++|+||.+|+||++++||||||+|||+|+.+| .|.+.++ .++++.
T Consensus 453 ~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~ 532 (590)
T cd03793 453 HPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRF 532 (590)
T ss_pred cccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCc
Confidence 11 12345899999999999999999999999999999999999976 3455444 234444
Q ss_pred ----CCHHHHHHHHHHHHhCCCC-CccHHH-----HhcCCHHHHHHHHHHHHHhcC
Q 008544 393 ----DGRNGFVEATLKALAEEPA-QPTDAQ-----THQLSWESATERFLQVAELVG 438 (562)
Q Consensus 393 ----~d~~~la~~i~~ll~~~~~-~l~~~a-----r~~~sw~~~~~~~~~~y~~~~ 438 (562)
++.++++++|.++++.+.. .+.++. .+.|+|++.++.|.++|+.+.
T Consensus 533 ~~~~e~v~~La~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 533 KSPDESVQQLTQYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred cchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2677889999998855432 232221 188999999999999999886
No 70
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.87 E-value=7.2e-21 Score=196.83 Aligned_cols=238 Identities=13% Similarity=0.091 Sum_probs=162.7
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
+..+.+++++.+||+||++.+... +. +....+..+ |++...+.... ....+++.+. +|.
T Consensus 79 ~~~l~~~i~~~~pDvVi~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~----------------~~~~~~~~~~-~d~ 138 (348)
T TIGR01133 79 VFQARRILKKFKPDAVIGFGGYVS-GP--AGLAAKLLGIPLFHHEQNAVP----------------GLTNKLLSRF-AKK 138 (348)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccc-HH--HHHHHHHcCCCEEEECCCCCc----------------cHHHHHHHHH-hCe
Confidence 456778889999999999976543 22 222233333 66533221111 0123444454 799
Q ss_pred EEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHH-HHHHHHHHHHhcCCcEE
Q 008544 229 VIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHKELAGLEM 307 (562)
Q Consensus 229 vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~~~~~~~l 307 (562)
++++|+..+++... ....+|++..++.+... ....+.+++.++++++|+....|+... +++++..+.+. ++++
T Consensus 139 ii~~~~~~~~~~~~-~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~ 212 (348)
T TIGR01133 139 VLISFPGAKDHFEA-VLVGNPVRQEIRSLPVP---RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQI 212 (348)
T ss_pred eEECchhHhhcCCc-eEEcCCcCHHHhcccch---hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEE
Confidence 99999998876532 33446777655443211 223455666788999998777888655 55888877653 5666
Q ss_pred EEEeCCCCHHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-------
Q 008544 308 DLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------- 379 (562)
Q Consensus 308 ~ivG~g~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~------- 379 (562)
++++++.+.+.+++.++++++...+ +. ..+..++|+.||++|.+| + +++++|||++|+|+|+++.++
T Consensus 213 ~~~~g~~~~~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 213 VHQTGKNDLEKVKNVYQELGIEAIVTFI-DENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred EEECCcchHHHHHHHHhhCCceEEecCc-ccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 4444333457888888888875444 44 337889999999999875 2 789999999999999998753
Q ss_pred -ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 380 -NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 380 -~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
.+++.++.+|++++ ++++++++|.++++|++. +|+++++
T Consensus 288 ~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 288 NAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAAR 333 (348)
T ss_pred HHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 24788888999874 499999999999988765 6777776
No 71
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=198.22 Aligned_cols=378 Identities=16% Similarity=0.130 Sum_probs=233.3
Q ss_pred CeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCC----ceeC----Cchh----hHH
Q 008544 50 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGN----ITFA----SPKE----QEA 115 (562)
Q Consensus 50 ~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~----i~~~----~~~~----~~~ 115 (562)
|||+.++....|. .||-+-....+.++|+++| ++|+|+.|.+...... +.+. .++. .... .+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g-~~v~v~lP~y~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRG-VDVRVLLPSYPKVQKE--WRDLLKVVGKFGVLKGGRAQLFIVKEY 77 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcC-CeEEEEcCCchhhhhh--hccccceeeEeeeeecccceEEEEEee
Confidence 6888899777784 5788888899999999998 9999999976421111 1110 0000 0000 000
Q ss_pred H----HHHHhhh-ccCCCC-CcccccccccchhccchhhhHHhHHhhcCc----CCCcEEEecCCchhhhhhchHHHHhh
Q 008544 116 Y----VRWWLED-RTGFTS-TFDTRFYPGKFAADKKSILAVGDITEIIPD----EEADIAVLEEPEHLTWFHHGKRWKAK 185 (562)
Q Consensus 116 ~----~~~~~~~-~~~~~~-~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~----~~pDvV~~~~~~~~~~~~~~~~~~~~ 185 (562)
. +..++.. ...+.. +-....+.... .+...-.......+.. ..|||||+|+.... +. ...++..
T Consensus 78 ~~~~~v~~~lid~~~~f~r~~~~~~~~~d~~---~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~-L~--~~~lk~~ 151 (487)
T COG0297 78 GKDGGVDLYLIDNPALFKRPDSTLYGYYDNA---ERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTG-LL--PAYLKQR 151 (487)
T ss_pred cccCCCcEEEecChhhcCccccccCCCCcHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHH-HH--HHHHhhc
Confidence 0 0000000 000000 00011111110 0100001111112211 57999999997655 22 2334443
Q ss_pred ---c-C-CEEEEEcCC-----cH-HHHhhhhchHHHHH--------HHHHHHHHHHHHhccEEEEcChhhhc-cC-----
Q 008544 186 ---F-R-FVVGIVHTN-----YL-EYVKREKNDRLQAF--------LLEFVNSWLARVHCHKVIRLSAATQE-YP----- 240 (562)
Q Consensus 186 ---~-~-~vi~~~h~~-----~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ad~vi~~S~~~~~-~~----- 240 (562)
. . |.|+|+|.. +. .+....+.....-. -...+...+. ++|.|.++|....+ +.
T Consensus 152 ~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~--~ad~vttVSptYa~Ei~t~~~g 229 (487)
T COG0297 152 YRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLY--YADAVTTVSPTYAGEIYTPEYG 229 (487)
T ss_pred ccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhe--eccEEEEECHHHHHhhcccccc
Confidence 1 2 899999954 11 11111111110000 0011111111 58999999966655 11
Q ss_pred -----------CCccccccccCCCCcCcchhh-------------------hHHhhcCCC--CCccEEEEEeeccccCCH
Q 008544 241 -----------NSIVCNVHGVNPKFLEIGEKK-------------------MEQQQNGNK--AFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 241 -----------~~~~~~v~GVd~~~~~~~~~~-------------------~~~~~~~~~--~~~~~il~vGr~~~~Kg~ 288 (562)
.+...+.||+|....+|.... ......+++ .+.+.+.++||+.++||+
T Consensus 230 ~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~ 309 (487)
T COG0297 230 EGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGL 309 (487)
T ss_pred ccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccch
Confidence 111223468888766554332 111224554 357899999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChH--HHHhhcCEEEEccCCCCCcHHHHH
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAE 364 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lE 364 (562)
+.+++++..+.+.. +++++.|.|+. .+.+..+++.+...+.+..++++.- .+++.+|++++||++|++|++-++
T Consensus 310 dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~ 387 (487)
T COG0297 310 DLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLY 387 (487)
T ss_pred hHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHH
Confidence 99999999998874 99999999943 4777888888776666656655544 899999999999999999999999
Q ss_pred HHHcCCcEEeeCCCC-cccccc--------CCceEeeC--CHHHHHHHHHHHHhCCCC------CccHHHH-hcCCHHHH
Q 008544 365 ALAMGKIVVCANHPS-NDFFKQ--------FPNCRTYD--GRNGFVEATLKALAEEPA------QPTDAQT-HQLSWESA 426 (562)
Q Consensus 365 Ama~G~PVI~t~~~~-~e~v~~--------~~~g~~~~--d~~~la~~i~~ll~~~~~------~l~~~ar-~~~sw~~~ 426 (562)
||..|+++|+...|| .+.|.+ ..+|+++. |+++++.+|..++.-... .+..++. ..|+|+..
T Consensus 388 amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~s 467 (487)
T COG0297 388 AMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDLS 467 (487)
T ss_pred HHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchhH
Confidence 999999999999998 776654 57899873 999999999988753332 2222222 79999999
Q ss_pred HHHHHHHHHhcCcc
Q 008544 427 TERFLQVAELVGDV 440 (562)
Q Consensus 427 ~~~~~~~y~~~~~~ 440 (562)
++++.+.|+.....
T Consensus 468 a~~y~~lY~~~~~~ 481 (487)
T COG0297 468 AKEYVELYKPLLSK 481 (487)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988743
No 72
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=2.9e-20 Score=178.81 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=164.1
Q ss_pred EEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCc
Q 008544 52 IAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTF 131 (562)
Q Consensus 52 I~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (562)
|++++..+.|..+|.+.....+++.|.++| |+|++++. .
T Consensus 1 i~~i~~~~~~~~~G~~~~~~~l~~~L~~~g-~~v~v~~~--------------------~-------------------- 39 (229)
T cd01635 1 ILLVSTPLLPGGGGVELVLLDLAKALARRG-HEVEVVAL--------------------L-------------------- 39 (229)
T ss_pred CeeeccccCCCCCCchhHHHHHHHHHHHcC-CeEEEEEe--------------------c--------------------
Confidence 577888888878898999999999999997 99999951 0
Q ss_pred ccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHH
Q 008544 132 DTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQ 210 (562)
Q Consensus 132 ~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~ 210 (562)
...+.+.+++.+||+||++++....+.. ..+....+ |++.+.|+.+.........
T Consensus 40 ------------------~~~~~~~~~~~~~D~i~~~~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~---- 95 (229)
T cd01635 40 ------------------LLLLLRILRGFKPDVVHAHGYYPAPLAL--LLAARLLGIPLVLTVHGVNRSLLEGVPL---- 95 (229)
T ss_pred ------------------hHHHHHHHhhcCCCEEEEcCCCcHHHHH--HHHHhhCCCCEEEEEcCccHhhcccCcH----
Confidence 0013445556789999999987774431 12333333 8999999876654322111
Q ss_pred HHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHH
Q 008544 211 AFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEE 290 (562)
Q Consensus 211 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ 290 (562)
+ +....... ++.. |+|++.++||++.
T Consensus 96 ----~-~~~~~~~~-~~~~------------------------------------------------~~g~~~~~k~~~~ 121 (229)
T cd01635 96 ----S-LLALSIGL-ADKV------------------------------------------------FVGRLAPEKGLDD 121 (229)
T ss_pred ----H-HHHHHHhh-cceE------------------------------------------------EEEeecccCCHHH
Confidence 0 11111111 2222 9999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCC--eeEEeCCC---CChHHHHhhcCEEEEccCCCCCcHHHHHH
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGR---DHADPIFHDYKVFLNPSTTDVVCTATAEA 365 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l--~~~~~~~~---~~~~~l~~~adv~v~pS~~E~~~~~~lEA 365 (562)
+++++..+.++.++++++++|.+++....+..+.+++. ++.+++.. +....+++.||++++||..|++|++++||
T Consensus 122 ~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Ea 201 (229)
T cd01635 122 LIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEA 201 (229)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHH
Confidence 99999999988899999999998887766654555444 35556663 33335666699999999999999999999
Q ss_pred HHcCCcEEeeCCCC-ccccccCCceEee
Q 008544 366 LAMGKIVVCANHPS-NDFFKQFPNCRTY 392 (562)
Q Consensus 366 ma~G~PVI~t~~~~-~e~v~~~~~g~~~ 392 (562)
|+||+|||+|+.++ .|++.++.+|+++
T Consensus 202 m~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 202 MACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred HhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999997 8889888888863
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.87 E-value=1.3e-20 Score=200.50 Aligned_cols=272 Identities=13% Similarity=0.013 Sum_probs=175.2
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEE
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 230 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 230 (562)
.+.+++++.+||++|+++......+ ...+++.+ |++.+-|.........+ .....+.+++.+. +|.|+
T Consensus 115 ~~~~~l~~~~Pd~v~~~~~~~~~~~---l~~~~~~~ip~vl~~~~~~~~s~~~~-------~~~~~~~r~~~~~-~d~ii 183 (425)
T PRK05749 115 AVRRFLRFWRPKLVIIMETELWPNL---IAELKRRGIPLVLANARLSERSFKRY-------QKFKRFYRLLFKN-IDLVL 183 (425)
T ss_pred HHHHHHHhhCCCEEEEEecchhHHH---HHHHHHCCCCEEEEeccCChhhHHHH-------HHHHHHHHHHHHh-CCEEE
Confidence 3677889999999998865432111 12233333 76655443322111110 1122233333333 69999
Q ss_pred EcChhhhccCCCc-----cccccccCCCCcC-cch---hhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHh
Q 008544 231 RLSAATQEYPNSI-----VCNVHGVNPKFLE-IGE---KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE 301 (562)
Q Consensus 231 ~~S~~~~~~~~~~-----~~~v~GVd~~~~~-~~~---~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~ 301 (562)
++|+..++...+. +..+.+++.+... +.. ....+...+ ++.++++++|+ ..|+.+.+++|+.++.++
T Consensus 184 ~~S~~~~~~l~~~g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~~ 259 (425)
T PRK05749 184 AQSEEDAERFLALGAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLKQ 259 (425)
T ss_pred ECCHHHHHHHHHcCCCCCcEecccccccCCCChhhHHHHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHHh
Confidence 9999888742211 2222222222211 111 111122232 34667788876 468899999999999888
Q ss_pred cCCcEEEEEeCCCCH-HHHHHHHHhcCCeeEEe-C--------------CCCChHHHHhhcCEEEE-ccCCCCCcHHHHH
Q 008544 302 LAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVY-P--------------GRDHADPIFHDYKVFLN-PSTTDVVCTATAE 364 (562)
Q Consensus 302 ~~~~~l~ivG~g~~~-~~l~~~~~~l~l~~~~~-~--------------~~~~~~~l~~~adv~v~-pS~~E~~~~~~lE 364 (562)
.|+++|+|+|+|+++ +++++.++++++....+ + ...++.++|+.||+++. +|..|++|.+++|
T Consensus 260 ~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lE 339 (425)
T PRK05749 260 FPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLE 339 (425)
T ss_pred CCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHH
Confidence 899999999999886 78999999988763222 2 12356799999998555 6888999999999
Q ss_pred HHHcCCcEEeeCCC-C-ccccccC-CceEe--eCCHHHHHHHHHHHHhCCCC--CccHHHHhcC-CHHHHHHHHHHHHHh
Q 008544 365 ALAMGKIVVCANHP-S-NDFFKQF-PNCRT--YDGRNGFVEATLKALAEEPA--QPTDAQTHQL-SWESATERFLQVAEL 436 (562)
Q Consensus 365 Ama~G~PVI~t~~~-~-~e~v~~~-~~g~~--~~d~~~la~~i~~ll~~~~~--~l~~~ar~~~-sw~~~~~~~~~~y~~ 436 (562)
|||||+|||+++.. + .++.+.. .+|++ ++|+++++++|.++++|++. +|++++++.. +....++++++.++.
T Consensus 340 Ama~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~ 419 (425)
T PRK05749 340 PAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEP 419 (425)
T ss_pred HHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 99999999998764 3 4544331 23443 57999999999999998876 8888887222 124777788887765
Q ss_pred cC
Q 008544 437 VG 438 (562)
Q Consensus 437 ~~ 438 (562)
..
T Consensus 420 ~l 421 (425)
T PRK05749 420 YL 421 (425)
T ss_pred hc
Confidence 43
No 74
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.86 E-value=1.8e-21 Score=207.91 Aligned_cols=260 Identities=11% Similarity=0.056 Sum_probs=171.0
Q ss_pred CCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhh-h
Q 008544 161 EADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT-Q 237 (562)
Q Consensus 161 ~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~-~ 237 (562)
..|+|++|.+..+ .+ +..+.++.. ++...+|..++.+........ .+.+...+.. ||.|...+... +
T Consensus 131 ~~d~iwihDyhl~-ll--p~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~-----~~~ll~~~l~--~D~igF~t~~~~~ 200 (460)
T cd03788 131 PGDLVWVHDYHLL-LL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLPW-----REELLRGLLG--ADLIGFQTERYAR 200 (460)
T ss_pred CCCEEEEeChhhh-HH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC-----hHHHHHHHhc--CCEEEECCHHHHH
Confidence 4699999998554 33 233444332 789999988866543211100 0111111111 35555554222 2
Q ss_pred cc--------------------CC--Ccc-ccccccCCCCcCcchhhhH-----HhhcCCCCCccEEEEEeeccccCCHH
Q 008544 238 EY--------------------PN--SIV-CNVHGVNPKFLEIGEKKME-----QQQNGNKAFTKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 238 ~~--------------------~~--~~~-~~v~GVd~~~~~~~~~~~~-----~~~~~~~~~~~~il~vGr~~~~Kg~~ 289 (562)
.+ .. ..+ +..+|||++.|.+...... ....+..++.++|+++||+.+.||++
T Consensus 201 ~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~ 280 (460)
T cd03788 201 NFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIP 280 (460)
T ss_pred HHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHH
Confidence 21 01 112 2235999877654322111 11233445678999999999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEEEeCC-----CCHHHH----HHHHHhcCC--------eeEEeCC---CCChHHHHhh
Q 008544 290 ELLGLLNIYHKELAG----LEMDLYGNG-----EDFDQI----QRAAKKLKL--------VVRVYPG---RDHADPIFHD 345 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~----~~l~ivG~g-----~~~~~l----~~~~~~l~l--------~~~~~~~---~~~~~~l~~~ 345 (562)
.+++|++.+.+++|+ ++|+++|.+ ++.+++ ++++.+++. .+.++++ .++..++|+.
T Consensus 281 ~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~ 360 (460)
T cd03788 281 ERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRA 360 (460)
T ss_pred HHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHh
Confidence 999999999888886 578888753 222333 344333321 2445544 4455599999
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCCc----EEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---CccH
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTD 415 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~P----VI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~ 415 (562)
||+||+||..|+||++++||||||+| ||+|+.+| .+. +.+|++++ |+++++++|.+++++++. .+.+
T Consensus 361 aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~ 437 (460)
T cd03788 361 ADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHR 437 (460)
T ss_pred ccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999 99998776 554 46788875 999999999999998754 4444
Q ss_pred HHH---hcCCHHHHHHHHHHH
Q 008544 416 AQT---HQLSWESATERFLQV 433 (562)
Q Consensus 416 ~ar---~~~sw~~~~~~~~~~ 433 (562)
+++ .+|+|+..++++++.
T Consensus 438 ~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 438 KLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 444 789999999998764
No 75
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.85 E-value=4.3e-21 Score=177.82 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=133.5
Q ss_pred HHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCC--
Q 008544 263 EQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRD-- 337 (562)
Q Consensus 263 ~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~-- 337 (562)
.+.....+.+.++|+|+|++.+.||++.+++++..+..+ .++++++++|.++....++..++.+++. +.+++...
T Consensus 5 ~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 5 LREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp HHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHH
T ss_pred HHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccc
Confidence 344556667789999999999999999999999999875 7899999999888888889988888774 66666665
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--C
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--Q 412 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~ 412 (562)
+..++|+.+|++++||..|++|++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.+++++++. .
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~ 164 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQK 164 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHH
Confidence 667999999999999999999999999999999999999887 99999999999985 889999999999999864 6
Q ss_pred ccHHHH
Q 008544 413 PTDAQT 418 (562)
Q Consensus 413 l~~~ar 418 (562)
|+++++
T Consensus 165 l~~~~~ 170 (172)
T PF00534_consen 165 LGKNAR 170 (172)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776665
No 76
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.85 E-value=4.9e-19 Score=184.98 Aligned_cols=257 Identities=18% Similarity=0.082 Sum_probs=163.4
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 238 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 238 (562)
+.+.+|++.+.|....+. . . ....++|+.+++.+..+... ... .. ...+.+.+. ||.|++.|+..++
T Consensus 100 ~~~~~i~~~~~P~~~~~~---~-~-~~~~~~Vyd~~D~~~~~~~~--~~~----~~-~~e~~~~~~-ad~vi~~S~~l~~ 166 (373)
T cd04950 100 GFGRPILWYYTPYTLPVA---A-L-LQASLVVYDCVDDLSAFPGG--PPE----LL-EAERRLLKR-ADLVFTTSPSLYE 166 (373)
T ss_pred CCCCcEEEEeCccHHHHH---h-h-cCCCeEEEEcccchhccCCC--CHH----HH-HHHHHHHHh-CCEEEECCHHHHH
Confidence 445567777766555222 1 1 22237888888766543321 111 11 223333333 7999999998888
Q ss_pred cCCC---cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC
Q 008544 239 YPNS---IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE 314 (562)
Q Consensus 239 ~~~~---~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~ 314 (562)
...+ .+ ...||+|.+.|.+..............+.+.++|+|++..+++++.+.+++ +..|+++|+++|.++
T Consensus 167 ~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ll~~la----~~~p~~~~vliG~~~ 242 (373)
T cd04950 167 AKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLELLEALA----KARPDWSFVLIGPVD 242 (373)
T ss_pred HHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHHHHHHHH----HHCCCCEEEEECCCc
Confidence 4322 22 233699987776433221100111223468999999999988877655544 456899999999973
Q ss_pred CHHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEEEccC-----CCCCcHHHHHHHHcCCcEEeeCCCCccccccCC
Q 008544 315 DFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST-----TDVVCTATAEALAMGKIVVCANHPSNDFFKQFP 387 (562)
Q Consensus 315 ~~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v~pS~-----~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~ 387 (562)
........ .. ..+++++|.. ++...+++.+|++++|+. .+++|++++||||||+|||+|+.+. +.....
T Consensus 243 ~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~--~~~~~~ 318 (373)
T cd04950 243 VSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE--VRRYED 318 (373)
T ss_pred CccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH--HHhhcC
Confidence 32222222 11 2346666654 466699999999999975 2468999999999999999998754 333334
Q ss_pred ceEee-CCHHHHHHHHHHHHhCCCC-CccHH--HHhcCCHHHHHHHHHHHHHh
Q 008544 388 NCRTY-DGRNGFVEATLKALAEEPA-QPTDA--QTHQLSWESATERFLQVAEL 436 (562)
Q Consensus 388 ~g~~~-~d~~~la~~i~~ll~~~~~-~l~~~--ar~~~sw~~~~~~~~~~y~~ 436 (562)
++++. +|+++|+++|.+++.++.. ...+. ..+++||++.++++.+..+.
T Consensus 319 ~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 319 EVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred cEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 45444 5899999999998766544 22222 23889999999999965543
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.84 E-value=1.5e-19 Score=189.83 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=173.7
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+++++.+||+||++.|... +. ......+.+ |++ ++++++... ..|+.+ ++|.
T Consensus 93 ~~~l~~~l~~~kPDvVi~~~p~~~--~~-~l~~~~~~~iP~~-~v~td~~~~-----------------~~w~~~-~~d~ 150 (391)
T PRK13608 93 LNKLINLLIKEKPDLILLTFPTPV--MS-VLTEQFNINIPVA-TVMTDYRLH-----------------KNWITP-YSTR 150 (391)
T ss_pred HHHHHHHHHHhCcCEEEECCcHHH--HH-HHHHhcCCCCCEE-EEeCCCCcc-----------------cccccC-CCCE
Confidence 457888999999999999877543 21 111122223 654 455554210 112233 3799
Q ss_pred EEEcChhhhccCC------Ccccccccc--CCCCcCcchhhhHHhhcCCCCCccE-EEEEeeccccCCHHHHHHHHHHHH
Q 008544 229 VIRLSAATQEYPN------SIVCNVHGV--NPKFLEIGEKKMEQQQNGNKAFTKG-AYYIGRMVWSKGYEELLGLLNIYH 299 (562)
Q Consensus 229 vi~~S~~~~~~~~------~~~~~v~GV--d~~~~~~~~~~~~~~~~~~~~~~~~-il~vGr~~~~Kg~~~ll~a~~~l~ 299 (562)
+++.|+..++... +.+. +.|+ +..+..+......+...+++++.++ +++.|++...||++.+++++.
T Consensus 151 ~~v~s~~~~~~l~~~gi~~~ki~-v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~--- 226 (391)
T PRK13608 151 YYVATKETKQDFIDVGIDPSTVK-VTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL--- 226 (391)
T ss_pred EEECCHHHHHHHHHcCCCHHHEE-EECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH---
Confidence 9999988877422 1222 2243 3334332223333445666655554 567899998899999999863
Q ss_pred HhcCCcEEEEEeCCC-C-HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGE-D-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~-~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+..+++++++++++. . .+++++.... ..++.+++..+++.++|+.||++|. ++.|+++.|||+||+|+|+++.
T Consensus 227 ~~~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 227 AKSANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNP 301 (391)
T ss_pred hcCCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCC
Confidence 344688887765322 1 2344443322 2246677778889999999999996 3468999999999999999964
Q ss_pred -CC-----ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHHhcC
Q 008544 378 -PS-----NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 378 -~~-----~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~~~~ 438 (562)
++ ..++.+...|+..+|+++++++|.++++|++. +|+++++ +.++++.+++.+++.++...
T Consensus 302 ~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~~ 373 (391)
T PRK13608 302 APGQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGHSS 373 (391)
T ss_pred CCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhhh
Confidence 34 23445667777788999999999999998875 8888887 67999999999999887544
No 78
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.84 E-value=1.3e-19 Score=189.84 Aligned_cols=259 Identities=10% Similarity=0.015 Sum_probs=172.7
Q ss_pred HhHHhhcCcCCCcEEEecCCchhhhh-hchHHHHh--hcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhc
Q 008544 151 GDITEIIPDEEADIAVLEEPEHLTWF-HHGKRWKA--KFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 226 (562)
Q Consensus 151 ~~l~~~i~~~~pDvV~~~~~~~~~~~-~~~~~~~~--~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 226 (562)
..+.++|++++||+||++.|...... .....+.+ ..+ |.+.++. ++... ...|+.+ .+
T Consensus 90 ~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~t-D~~~~----------------~~~w~~~-~~ 151 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVT-DLGTC----------------HPTWFHK-GV 151 (382)
T ss_pred HHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEEC-CCCCc----------------CcccccC-CC
Confidence 56778899999999999876532110 00111221 123 6665554 43110 0122233 37
Q ss_pred cEEEEcChhhhcc------CCCccccc-cccCCCCcCcc-hhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHH
Q 008544 227 HKVIRLSAATQEY------PNSIVCNV-HGVNPKFLEIG-EKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIY 298 (562)
Q Consensus 227 d~vi~~S~~~~~~------~~~~~~~v-~GVd~~~~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l 298 (562)
|.+++.|+..++. +.+++..+ ++++..+..+. .....+...+++++.++|+++|+....|++..+++++..+
T Consensus 152 d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~ 231 (382)
T PLN02605 152 TRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDS 231 (382)
T ss_pred CEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHh
Confidence 9999999888763 22223222 35555554422 2334566788888889999999999999999999998765
Q ss_pred HH----hcCCcE-EEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcE
Q 008544 299 HK----ELAGLE-MDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 372 (562)
Q Consensus 299 ~~----~~~~~~-l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 372 (562)
.. ..++.+ ++++|.++. .+.+++. ..+..++++|..+++.++|+.+|++|.++ .|++++||||||+||
T Consensus 232 ~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~Pv 305 (382)
T PLN02605 232 LYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLPI 305 (382)
T ss_pred hccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCCE
Confidence 31 135665 566776532 3444443 12345777888889999999999999865 488999999999999
Q ss_pred EeeCC------CCccccccCCceEeeCCHHHHHHHHHHHHhC-CCC--CccHHHH---hcCCHHHHHHHHHHH
Q 008544 373 VCANH------PSNDFFKQFPNCRTYDGRNGFVEATLKALAE-EPA--QPTDAQT---HQLSWESATERFLQV 433 (562)
Q Consensus 373 I~t~~------~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~-~~~--~l~~~ar---~~~sw~~~~~~~~~~ 433 (562)
|+++. ++.+++.++..|+...|+++++++|.+++++ ++. .|+++++ ...+++.+++.+.+.
T Consensus 306 I~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 306 ILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred EEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 99984 2344556666777779999999999999998 544 7777776 455666666666543
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.82 E-value=4.5e-19 Score=188.05 Aligned_cols=257 Identities=14% Similarity=0.073 Sum_probs=171.0
Q ss_pred CcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc-
Q 008544 162 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 238 (562)
Q Consensus 162 pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 238 (562)
-|+|.+|....+ .+ +..+..+.. ++.+..|..|+...-..... ..+.+.+-+. .||.|-..+....+
T Consensus 128 ~d~vwvhDYhl~-l~--p~~lr~~~~~~~igfFlHipfP~~e~f~~lp-----~r~~il~gll--~~dligF~t~~~~~~ 197 (456)
T TIGR02400 128 GDIVWVHDYHLM-LL--PAMLRELGVQNKIGFFLHIPFPSSEIYRTLP-----WRRELLEGLL--AYDLVGFQTYDDARN 197 (456)
T ss_pred CCEEEEecchhh-HH--HHHHHhhCCCCeEEEEEeCCCCChHHHhhCC-----cHHHHHHHHh--cCCEEEECCHHHHHH
Confidence 489999987655 33 333444333 56678888776543221111 1122222222 35888777755544
Q ss_pred cC-------------------CC--cc-ccccccCCCCcCcchhhh--------HHhhcCCCCCccEEEEEeeccccCCH
Q 008544 239 YP-------------------NS--IV-CNVHGVNPKFLEIGEKKM--------EQQQNGNKAFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 239 ~~-------------------~~--~~-~~v~GVd~~~~~~~~~~~--------~~~~~~~~~~~~~il~vGr~~~~Kg~ 288 (562)
+. .. .+ ...+|||++.|.+..... .+... .+.++|+++||+++.||+
T Consensus 198 Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~---~~~~vIl~VgRLd~~KGi 274 (456)
T TIGR02400 198 FLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL---KGRKLIIGVDRLDYSKGL 274 (456)
T ss_pred HHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc---CCCeEEEEccccccccCH
Confidence 10 01 01 122589987765432111 11112 347899999999999999
Q ss_pred HHHHHHHHHHHHhcCC----cEEEEEe-----CCCCHHHHHHHHHhc----CC--------eeEEeCC---CCChHHHHh
Q 008544 289 EELLGLLNIYHKELAG----LEMDLYG-----NGEDFDQIQRAAKKL----KL--------VVRVYPG---RDHADPIFH 344 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~----~~l~ivG-----~g~~~~~l~~~~~~l----~l--------~~~~~~~---~~~~~~l~~ 344 (562)
+.+++|++++.+++|+ +.|+++| ++++.+++++.++++ +. .+.++++ .++..++|+
T Consensus 275 ~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~ 354 (456)
T TIGR02400 275 PERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYR 354 (456)
T ss_pred HHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHH
Confidence 9999999999888886 4577774 344455566555544 11 2444554 344558999
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCc----EEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---Ccc
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPT 414 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~P----VI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~ 414 (562)
.||+||+||..||||++++||||||+| ||+|+.+| .+.+. +|++++ |+++++++|.++++++.. ++.
T Consensus 355 aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~ 431 (456)
T TIGR02400 355 AADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERH 431 (456)
T ss_pred hCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999 99998776 66663 688874 999999999999997764 223
Q ss_pred HHHH---hcCCHHHHHHHHHHHH
Q 008544 415 DAQT---HQLSWESATERFLQVA 434 (562)
Q Consensus 415 ~~ar---~~~sw~~~~~~~~~~y 434 (562)
++.+ .++++...++++++..
T Consensus 432 ~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 432 RAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHh
Confidence 3223 7799999999988654
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.78 E-value=1.4e-18 Score=195.39 Aligned_cols=266 Identities=12% Similarity=0.025 Sum_probs=171.6
Q ss_pred CcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc-
Q 008544 162 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 238 (562)
Q Consensus 162 pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 238 (562)
-|+|.+|....+ .+ ...+.++.. ++.+.+|..|+.+.-..-... ...+++- +. .||.|-+.+....+
T Consensus 148 ~d~vWvhDYhL~-ll--p~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~-r~~il~g----ll--~aDligF~t~~y~r~ 217 (797)
T PLN03063 148 GDVVWCHDYHLM-FL--PQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPS-RSELLRA----VL--TADLIGFHTYDFARH 217 (797)
T ss_pred CCEEEEecchhh-hH--HHHHHHhCCCCcEEEEecCCCCCHHHHhhCCC-HHHHHHH----Hh--cCCEEEeCCHHHHHH
Confidence 389999986554 33 233444433 688888988876553321111 1111111 11 13544444433332
Q ss_pred -----------------cC--C--Ccc-ccccccCCCCcCcchhh-----hHHhhcCCCCCccEEEEEeeccccCCHHHH
Q 008544 239 -----------------YP--N--SIV-CNVHGVNPKFLEIGEKK-----MEQQQNGNKAFTKGAYYIGRMVWSKGYEEL 291 (562)
Q Consensus 239 -----------------~~--~--~~~-~~v~GVd~~~~~~~~~~-----~~~~~~~~~~~~~~il~vGr~~~~Kg~~~l 291 (562)
+. . ..+ +..+|||+..|.+.... ..........+.++|+++||+.+.||++.+
T Consensus 218 Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~l 297 (797)
T PLN03063 218 FLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQK 297 (797)
T ss_pred HHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHH
Confidence 10 0 011 22258988766432211 011101112247899999999999999999
Q ss_pred HHHHHHHHHhcCCcE--EEE--Ee-----CCCCHHHHHHHHHhcC--Ce----------eEEeCC---CCChHHHHhhcC
Q 008544 292 LGLLNIYHKELAGLE--MDL--YG-----NGEDFDQIQRAAKKLK--LV----------VRVYPG---RDHADPIFHDYK 347 (562)
Q Consensus 292 l~a~~~l~~~~~~~~--l~i--vG-----~g~~~~~l~~~~~~l~--l~----------~~~~~~---~~~~~~l~~~ad 347 (562)
++|++.+.+++|+++ +++ ++ ++++.+++++.++++. ++ ++++.+ .++..++|+.||
T Consensus 298 L~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~AD 377 (797)
T PLN03063 298 YLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITD 377 (797)
T ss_pred HHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCC
Confidence 999999998888864 333 33 3444566766666653 22 222332 234448999999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCc----EEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---CccHHH
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQ 417 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~P----VI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~~a 417 (562)
+||+||..||++++++||||||+| +|.|+.+| .+.+ +.+|++++ |+++++++|.++++.++. ...++.
T Consensus 378 vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~ 455 (797)
T PLN03063 378 VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHN 455 (797)
T ss_pred EEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999 99998887 6655 45788874 999999999999996553 222222
Q ss_pred H---hcCCHHHHHHHHHHHHHhcCc
Q 008544 418 T---HQLSWESATERFLQVAELVGD 439 (562)
Q Consensus 418 r---~~~sw~~~~~~~~~~y~~~~~ 439 (562)
+ .+++|...++.+++.++.+..
T Consensus 456 ~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 456 FQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred HHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 2 889999999999998887663
No 81
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.74 E-value=3.2e-16 Score=163.34 Aligned_cols=264 Identities=12% Similarity=0.060 Sum_probs=155.0
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHH-HHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNS-WLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad 227 (562)
+..+.+++++.+||+||+|+.....+. +...+.+.+ |++.+-+.. ..+..... +....++ ...+. ||
T Consensus 75 ~~~l~~~l~~~~pDiv~~~gd~~~~la--~a~aa~~~~ipv~h~~~g~-~s~~~~~~-------~~~~~~r~~~~~~-ad 143 (365)
T TIGR00236 75 LEGLEELLLEEKPDIVLVQGDTTTTLA--GALAAFYLQIPVGHVEAGL-RTGDRYSP-------MPEEINRQLTGHI-AD 143 (365)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH--HHHHHHHhCCCEEEEeCCC-CcCCCCCC-------CccHHHHHHHHHH-HH
Confidence 456888899999999999986544333 334445545 665332211 10000000 0011112 22233 79
Q ss_pred EEEEcChhhhccC------CCccccc-ccc-CCCCcCc--chhhhHHhhcCCCCCccEEEEEe-ec-cccCCHHHHHHHH
Q 008544 228 KVIRLSAATQEYP------NSIVCNV-HGV-NPKFLEI--GEKKMEQQQNGNKAFTKGAYYIG-RM-VWSKGYEELLGLL 295 (562)
Q Consensus 228 ~vi~~S~~~~~~~------~~~~~~v-~GV-d~~~~~~--~~~~~~~~~~~~~~~~~~il~vG-r~-~~~Kg~~~ll~a~ 295 (562)
.+++.|+..++.. .+.+..+ +++ |...... ..........+ .+.+++++.+ +. ...||++.+++++
T Consensus 144 ~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~k~~~~ll~a~ 221 (365)
T TIGR00236 144 LHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENVGEPLENIFKAI 221 (365)
T ss_pred hccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhhhhHHHHHHHHH
Confidence 9999998888732 2222222 343 3211111 10111122232 2234555555 43 3458999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCC--eeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCc
Q 008544 296 NIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI 371 (562)
Q Consensus 296 ~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l--~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P 371 (562)
.++.++.|++++++.|.+... ......+.++. ++.+++. +.+...+++.+|+++.+| |..++|||+||+|
T Consensus 222 ~~l~~~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~P 295 (365)
T TIGR00236 222 REIVEEFEDVQIVYPVHLNPV-VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKP 295 (365)
T ss_pred HHHHHHCCCCEEEEECCCChH-HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCC
Confidence 999888889999988654321 11122233332 4566654 334458899999999887 5568999999999
Q ss_pred EEee-CCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHH
Q 008544 372 VVCA-NHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQ 432 (562)
Q Consensus 372 VI~t-~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~ 432 (562)
||++ +.++ .+.+.++.++++..|++++++++.+++++++. +|+++.. ...+++++++.+.+
T Consensus 296 vI~~~~~~~~~e~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 296 VLVLRDTTERPETVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred EEECCCCCCChHHHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 9997 5565 67777665555446999999999999988764 4444332 23345555554444
No 82
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.73 E-value=2.1e-16 Score=164.43 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=162.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+.+++.+||+||+|......+. +...++..+ |++.+.++... +.... ... ....++.+. +|.
T Consensus 77 ~~~l~~~l~~~~pDvV~~~g~~~~~~~--~~~aa~~~~iPvv~~~~g~~s-~~~~~-~~~-------~~r~~~~~~-ad~ 144 (363)
T cd03786 77 LIGLEAVLLEEKPDLVLVLGDTNETLA--AALAAFKLGIPVAHVEAGLRS-FDRGM-PDE-------ENRHAIDKL-SDL 144 (363)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHcCCCEEEEeccccc-CCCCC-Cch-------HHHHHHHHH-hhh
Confidence 455777788889999999975443333 333444445 77755543211 10000 000 111223333 799
Q ss_pred EEEcChhhhccC------CCccccc-ccc-CCCCcCcchh--hhHHhhcCCCCCccEEEEEeeccc---cCCHHHHHHHH
Q 008544 229 VIRLSAATQEYP------NSIVCNV-HGV-NPKFLEIGEK--KMEQQQNGNKAFTKGAYYIGRMVW---SKGYEELLGLL 295 (562)
Q Consensus 229 vi~~S~~~~~~~------~~~~~~v-~GV-d~~~~~~~~~--~~~~~~~~~~~~~~~il~vGr~~~---~Kg~~~ll~a~ 295 (562)
+++.|+..++.. .+.+..+ +++ |...+..... ...+...+.++...++++.|+... .||++.+++++
T Consensus 145 ~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al 224 (363)
T cd03786 145 HFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEAL 224 (363)
T ss_pred ccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHH
Confidence 999998888742 2223222 333 3221111111 111123445554556778888764 79999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCC---eeEEeC--CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC
Q 008544 296 NIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKL---VVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK 370 (562)
Q Consensus 296 ~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l---~~~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~ 370 (562)
..+... ++.+++.|.++..+.+++.+.+++. ++.+.+ .+.+...+|+.||++|.+|. + .+.|||++|+
T Consensus 225 ~~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~ 297 (363)
T cd03786 225 AELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGV 297 (363)
T ss_pred HHHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCC
Confidence 988654 6788877877767888888777653 455553 35567789999999999984 3 4799999999
Q ss_pred cEEeeCCC-C-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHH
Q 008544 371 IVVCANHP-S-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQV 433 (562)
Q Consensus 371 PVI~t~~~-~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~~~~~~~~ 433 (562)
|||+++.. . .+.++++.++.+.+|+++++++|.++++++.. .|. ...|.-...++++.++
T Consensus 298 PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~---~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 298 PVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLSDEFAYSLMS---INPYGDGNASERIVEI 361 (363)
T ss_pred CEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhcCchhhhcCC---CCCCCCCHHHHHHHHH
Confidence 99999653 3 66666554444445799999999999998765 443 2233333445555443
No 83
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.71 E-value=1e-16 Score=165.85 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=154.5
Q ss_pred ccEEEEcChhhhccCCCccccc---------cccCCCCcCcchhhh-------HHhhcCCCCCccEEEEEeeccccCCHH
Q 008544 226 CHKVIRLSAATQEYPNSIVCNV---------HGVNPKFLEIGEKKM-------EQQQNGNKAFTKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 226 ad~vi~~S~~~~~~~~~~~~~v---------~GVd~~~~~~~~~~~-------~~~~~~~~~~~~~il~vGr~~~~Kg~~ 289 (562)
++++++.|..++..+....... .+||...+.++.... .+...+....+....-+.++.+.||+.
T Consensus 210 ~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~ 289 (495)
T KOG0853|consen 210 AWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQD 289 (495)
T ss_pred cceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCce
Confidence 6899998888777443322222 255555544321111 011122233355666778999999999
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEEeCC-CC---------HHHHHHHHHhcCCe--eEEe-CCCCChH--HHHhhcC-E
Q 008544 290 ELLGLLNIYHKEL-----AGLEMDLYGNG-ED---------FDQIQRAAKKLKLV--VRVY-PGRDHAD--PIFHDYK-V 348 (562)
Q Consensus 290 ~ll~a~~~l~~~~-----~~~~l~ivG~g-~~---------~~~l~~~~~~l~l~--~~~~-~~~~~~~--~l~~~ad-v 348 (562)
.+++++.++.... ++.++.++|+. .+ .++++++++++++. ..++ ....+.. .++++++ +
T Consensus 290 l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v 369 (495)
T KOG0853|consen 290 LALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGV 369 (495)
T ss_pred eehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceE
Confidence 9999999998877 45788888832 11 26778888888773 3334 4455555 4444444 5
Q ss_pred EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC-CHH---HHHHHHHHHHhCCCC--CccHHHH---
Q 008544 349 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-GRN---GFVEATLKALAEEPA--QPTDAQT--- 418 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~-d~~---~la~~i~~ll~~~~~--~l~~~ar--- 418 (562)
++.|.. |.||++++|||+||+|||+|+.|| .|++.++.+|++++ +.+ .+++++.++..|++. +|+++++
T Consensus 370 ~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV 448 (495)
T KOG0853|consen 370 LYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRV 448 (495)
T ss_pred EecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 556666 999999999999999999999999 99999999999986 555 599999999999997 8999888
Q ss_pred -hcCCHHHHHHHHHHHHHhcC
Q 008544 419 -HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 419 -~~~sw~~~~~~~~~~y~~~~ 438 (562)
+.|+|....+++.+......
T Consensus 449 ~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 449 KEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHHhHHHHHHHHHHHhHhcC
Confidence 66999999999998887554
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.71 E-value=9.9e-17 Score=180.70 Aligned_cols=264 Identities=11% Similarity=0.083 Sum_probs=168.0
Q ss_pred CcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc-
Q 008544 162 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 238 (562)
Q Consensus 162 pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 238 (562)
-|+|.+|....+ .+ +..+.++.. ++-+..|..|+...-..-.. ..+.+..-+. .||.|-..+....+
T Consensus 134 ~d~vwvhDYhl~-l~--p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp-----~~~~ll~~ll--~~Dligf~t~~~~r~ 203 (726)
T PRK14501 134 GDVVWVHDYQLM-LL--PAMLRERLPDARIGFFLHIPFPSFEVFRLLP-----WREEILEGLL--GADLIGFHTYDYVRH 203 (726)
T ss_pred CCEEEEeCchhh-hH--HHHHHhhCCCCcEEEEeeCCCCChHHHhhCC-----ChHHHHHHHh--cCCeEEeCCHHHHHH
Confidence 389999987665 23 333444433 67778888776543211111 1111111111 24555555543222
Q ss_pred -------------------cCCCc--cc-cccccCCCCcCcchhhhH-----HhhcCCCCCccEEEEEeeccccCCHHHH
Q 008544 239 -------------------YPNSI--VC-NVHGVNPKFLEIGEKKME-----QQQNGNKAFTKGAYYIGRMVWSKGYEEL 291 (562)
Q Consensus 239 -------------------~~~~~--~~-~v~GVd~~~~~~~~~~~~-----~~~~~~~~~~~~il~vGr~~~~Kg~~~l 291 (562)
+.... +. ..+|||++.|.+...... ..-.....+.++|+++||+.+.||+..+
T Consensus 204 Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~ 283 (726)
T PRK14501 204 FLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRR 283 (726)
T ss_pred HHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHH
Confidence 11111 11 225899877754321110 0000112346799999999999999999
Q ss_pred HHHHHHHHHhcCC----cEEEEEeCC-----CCHHHHHHHHHhc----C--------CeeEEeCC---CCChHHHHhhcC
Q 008544 292 LGLLNIYHKELAG----LEMDLYGNG-----EDFDQIQRAAKKL----K--------LVVRVYPG---RDHADPIFHDYK 347 (562)
Q Consensus 292 l~a~~~l~~~~~~----~~l~ivG~g-----~~~~~l~~~~~~l----~--------l~~~~~~~---~~~~~~l~~~ad 347 (562)
++|++++.+.+|+ ++|+++|.+ ++.+++++.++++ + ..+.++.+ .++..++|+.||
T Consensus 284 l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aD 363 (726)
T PRK14501 284 LLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAAD 363 (726)
T ss_pred HHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhcc
Confidence 9999999888886 688888742 2234444444332 2 12444433 445559999999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCC-----cEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---CccHH
Q 008544 348 VFLNPSTTDVVCTATAEALAMGK-----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDA 416 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~-----PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~~ 416 (562)
+|++||..||||++++||||||+ ||++...|+ .++. +|++++ |+++++++|.++++++.. ...++
T Consensus 364 v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~ 439 (726)
T PRK14501 364 VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA----EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQA 439 (726)
T ss_pred EEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC----cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999954 666666676 5553 477764 999999999999997653 22223
Q ss_pred HH---hcCCHHHHHHHHHHHHHhcCc
Q 008544 417 QT---HQLSWESATERFLQVAELVGD 439 (562)
Q Consensus 417 ar---~~~sw~~~~~~~~~~y~~~~~ 439 (562)
++ .+|||+..++++++.|+.+..
T Consensus 440 ~~~~v~~~~~~~w~~~~l~~l~~~~~ 465 (726)
T PRK14501 440 MQERLRRYDVHKWASDFLDELREAAE 465 (726)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33 789999999999999988753
No 85
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=5.3e-16 Score=162.59 Aligned_cols=246 Identities=13% Similarity=0.052 Sum_probs=153.8
Q ss_pred hHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhcc
Q 008544 149 AVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 227 (562)
Q Consensus 149 ~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 227 (562)
....+.+++++.+||+||+++.... +... ...+++.+ |++...+.. .+.. .....++ +.+. +|
T Consensus 73 ~~~~~~~~l~~~kPdivi~~~~~~~-~~~~-a~~a~~~~ip~i~~~~~~--~~~~----------~~~~~~~-~~~~-~d 136 (380)
T PRK00025 73 IRRRLKRRLLAEPPDVFIGIDAPDF-NLRL-EKKLRKAGIPTIHYVSPS--VWAW----------RQGRAFK-IAKA-TD 136 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCC-CHHH-HHHHHHCCCCEEEEeCCc--hhhc----------CchHHHH-HHHH-Hh
Confidence 3556788899999999999864322 1111 12233334 776554421 1110 0111122 2232 69
Q ss_pred EEEEcChhhhccCCCc-c-ccccccCC-CCcC-cchhhhHHhhcCCCCCccEEE-EEe-ecccc-CCHHHHHHHHHHHHH
Q 008544 228 KVIRLSAATQEYPNSI-V-CNVHGVNP-KFLE-IGEKKMEQQQNGNKAFTKGAY-YIG-RMVWS-KGYEELLGLLNIYHK 300 (562)
Q Consensus 228 ~vi~~S~~~~~~~~~~-~-~~v~GVd~-~~~~-~~~~~~~~~~~~~~~~~~~il-~vG-r~~~~-Kg~~~ll~a~~~l~~ 300 (562)
.+++.|+..++...+. . ..+.|.+. +... .......+...+++++.++++ +.| +.... ++.+.+++++..+.+
T Consensus 137 ~i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~ 216 (380)
T PRK00025 137 HVLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQ 216 (380)
T ss_pred hheeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777653321 1 11224322 1111 112233344566666566654 444 33333 457899999999988
Q ss_pred hcCCcEEEEEeC-CCCHHHHHHHHHhc-CCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC--
Q 008544 301 ELAGLEMDLYGN-GEDFDQIQRAAKKL-KLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN-- 376 (562)
Q Consensus 301 ~~~~~~l~ivG~-g~~~~~l~~~~~~l-~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~-- 376 (562)
+.|+++++++|. ++..+++++.+++. ++++.++. .+..++|+.||++|.+| |.+++|||+||+|+|++.
T Consensus 217 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~ 289 (380)
T PRK00025 217 RYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKV 289 (380)
T ss_pred hCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEcc
Confidence 888999999986 55567788887777 66655544 47789999999999998 788889999999999872
Q ss_pred ---------------CCC-ccccccCC--ceEee--CCHHHHHHHHHHHHhCCCC--CccHHH
Q 008544 377 ---------------HPS-NDFFKQFP--NCRTY--DGRNGFVEATLKALAEEPA--QPTDAQ 417 (562)
Q Consensus 377 ---------------~~~-~e~v~~~~--~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~a 417 (562)
.++ .+++.++. .+++. .|++++++++.++++|++. .|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 290 SPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred CHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 222 45554443 23443 3899999999999998875 555554
No 86
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.68 E-value=4.5e-14 Score=136.67 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=175.0
Q ss_pred hcCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcH--HHH----hhhhch--HHHHHHHHHHHHHHHHH-
Q 008544 156 IIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYL--EYV----KREKND--RLQAFLLEFVNSWLARV- 224 (562)
Q Consensus 156 ~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~--~~~----~~~~~~--~~~~~~~~~~~~~~~~~- 224 (562)
.+-+..|||.+-.....+.+- +.+.+. |++.++|-.-. +.. ++...+ .+-+..+.++...++..
T Consensus 145 ai~r~~Pdi~IDtMGY~fs~p-----~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~ 219 (465)
T KOG1387|consen 145 AIIRFPPDIFIDTMGYPFSYP-----IFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSA 219 (465)
T ss_pred HHHhCCchheEecCCCcchhH-----HHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhc
Confidence 345678999887655444222 222233 89999984411 111 111111 00111111111112221
Q ss_pred --hccEEEEcChhhhc----cCCCccccccccCCCCcCcchhhhHHhhcCC-CCCccEEEEEeeccccCCHHHHHHHHHH
Q 008544 225 --HCHKVIRLSAATQE----YPNSIVCNVHGVNPKFLEIGEKKMEQQQNGN-KAFTKGAYYIGRMVWSKGYEELLGLLNI 297 (562)
Q Consensus 225 --~ad~vi~~S~~~~~----~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~-~~~~~~il~vGr~~~~Kg~~~ll~a~~~ 297 (562)
.+|.+++.|..+++ ++.+..+.+ .++|..........+. ....+.++++|.+.|+|+.. +++.++.
T Consensus 220 G~~ad~vm~NssWT~nHI~qiW~~~~~~i------VyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al 292 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQIWQSNTCSI------VYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFAL 292 (465)
T ss_pred cccceEEEecchhhHHHHHHHhhccceeE------EcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHH
Confidence 48999999988877 333321111 1223222222323222 34467899999999999999 6665554
Q ss_pred HHHhc------CCcEEEEEeCCCC---H---HHHHHHHHhcCCeeE--E--eCCCCChHHHHhhcCEEEEccCCCCCcHH
Q 008544 298 YHKEL------AGLEMDLYGNGED---F---DQIQRAAKKLKLVVR--V--YPGRDHADPIFHDYKVFLNPSTTDVVCTA 361 (562)
Q Consensus 298 l~~~~------~~~~l~ivG~g~~---~---~~l~~~~~~l~l~~~--~--~~~~~~~~~l~~~adv~v~pS~~E~~~~~ 361 (562)
...+. ++++|+++|+-.. . +.++.+++++.++.+ | -.+++++.+++..|.+.|+.-+.|.||+.
T Consensus 293 ~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIs 372 (465)
T KOG1387|consen 293 YLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGIS 372 (465)
T ss_pred HHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchh
Confidence 44433 4599999998433 2 556778888887644 3 24577888999999999999999999999
Q ss_pred HHHHHHcCCcEEeeCCCC--cccccc---CCceEeeCCHHHHHHHHHHHHhCCCC---CccHHHH---hcCCHHHHHHHH
Q 008544 362 TAEALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEPA---QPTDAQT---HQLSWESATERF 430 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~~--~e~v~~---~~~g~~~~d~~~la~~i~~ll~~~~~---~l~~~ar---~~~sw~~~~~~~ 430 (562)
+.|+||+|+..|+.+.|| -+++.+ ..+||+..+.++.++++.+++..... .|++++| .+|+=.+..+.+
T Consensus 373 VVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~ 452 (465)
T KOG1387|consen 373 VVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDW 452 (465)
T ss_pred HHHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhH
Confidence 999999999999999988 677754 46899999999999999999987664 6677777 666655555555
Q ss_pred HHHHHhcC
Q 008544 431 LQVAELVG 438 (562)
Q Consensus 431 ~~~y~~~~ 438 (562)
...++...
T Consensus 453 ~~~i~kll 460 (465)
T KOG1387|consen 453 ENPICKLL 460 (465)
T ss_pred hHHHHHhh
Confidence 55554433
No 87
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.6e-14 Score=138.50 Aligned_cols=362 Identities=14% Similarity=0.112 Sum_probs=215.9
Q ss_pred hhhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhh
Q 008544 44 LMDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLED 123 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~ 123 (562)
.++.+ +||++|.-. . -|-+-++..-|..|++.| ++|+++..-.+....+..-.+++++.....
T Consensus 8 ~~~~k-~ra~vvVLG---D-vGRSPRMqYHA~Sla~~g-f~VdliGy~~s~p~e~l~~hprI~ih~m~~----------- 70 (444)
T KOG2941|consen 8 NKSKK-KRAIVVVLG---D-VGRSPRMQYHALSLAKLG-FQVDLIGYVESIPLEELLNHPRIRIHGMPN----------- 70 (444)
T ss_pred ccccc-ceEEEEEec---c-cCCChHHHHHHHHHHHcC-CeEEEEEecCCCChHHHhcCCceEEEeCCC-----------
Confidence 34444 666666532 1 244667888999999998 999999762211111111012222222111
Q ss_pred ccCCCCCccc-ccccccchhccchhhh-HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHH
Q 008544 124 RTGFTSTFDT-RFYPGKFAADKKSILA-VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLE 199 (562)
Q Consensus 124 ~~~~~~~~~i-~~y~~r~~~~~~~~~~-~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~ 199 (562)
.+. ...|......++...- ..-++.++-...+|++.+++|..+..+.. ..+...+. +.+..+| ||..
T Consensus 71 -------l~~~~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv-~~~~~~l~~~KfiIDWH-Ny~Y 141 (444)
T KOG2941|consen 71 -------LPFLQGGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIV-CVLYSILTGAKFIIDWH-NYGY 141 (444)
T ss_pred -------CcccCCCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHH-HHHHHHHhcceEEEEeh-hhHH
Confidence 110 0001100011111111 11133334467899999999988765532 22332222 7888888 5432
Q ss_pred H-Hhhhh--chHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCc-----cccc--------------c------ccC
Q 008544 200 Y-VKREK--NDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSI-----VCNV--------------H------GVN 251 (562)
Q Consensus 200 ~-~~~~~--~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-----~~~v--------------~------GVd 251 (562)
. ..... .....-.+.+...+++.+. ||.-+|+++++++...+. .... | +-|
T Consensus 142 sl~l~~~~g~~h~lV~l~~~~E~~fgk~-a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps~~~~l~~~H~lf~~l~~d 220 (444)
T KOG2941|consen 142 SLQLKLKLGFQHPLVRLVRWLEKYFGKL-ADYNLCVTKAMREDLIQNWGINRAKVLYDRPPSKPTPLDEQHELFMKLAGD 220 (444)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHhhcc-cccchhhHHHHHHHHHHhcCCceeEEEecCCCCCCCchhHHHHHHhhhccc
Confidence 1 11111 1111233555666666666 999999999998621100 0000 0 111
Q ss_pred CCCcCc---chhhhH----Hhh------cCCCCCccEEEEEeeccccCCHHHHHHHHHHHHH-------hcCCcEEEEEe
Q 008544 252 PKFLEI---GEKKME----QQQ------NGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHK-------ELAGLEMDLYG 311 (562)
Q Consensus 252 ~~~~~~---~~~~~~----~~~------~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~-------~~~~~~l~ivG 311 (562)
...|.. ..+... -.+ ...+....+++..-...+..++..|++|+....+ ..|.+-++|.|
T Consensus 221 ~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITG 300 (444)
T KOG2941|consen 221 HSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITG 300 (444)
T ss_pred cchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcC
Confidence 111110 000000 000 0011222344444567788999999999985422 24778899999
Q ss_pred CCCCHHHHHHHHHhcCCe-eEE---eCCCCChHHHHhhcCE--EEEccC-CCCCcHHHHHHHHcCCcEEeeCCCC-cccc
Q 008544 312 NGEDFDQIQRAAKKLKLV-VRV---YPGRDHADPIFHDYKV--FLNPST-TDVVCTATAEALAMGKIVVCANHPS-NDFF 383 (562)
Q Consensus 312 ~g~~~~~l~~~~~~l~l~-~~~---~~~~~~~~~l~~~adv--~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~~-~e~v 383 (562)
.||.++.+.+.+++.+.+ +.+ +...+|.+.+++.||+ ++++|. .=..|+++++...||+||++-+... .|++
T Consensus 301 KGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELV 380 (444)
T KOG2941|consen 301 KGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELV 380 (444)
T ss_pred CCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHH
Confidence 999999999999998876 344 4557788899999994 555554 3348999999999999999999998 9999
Q ss_pred ccCCceEeeCCHHHHHHHHHHHHhCCCC------CccHHHH--hcCCHHHHHHHHHH
Q 008544 384 KQFPNCRTYDGRNGFVEATLKALAEEPA------QPTDAQT--HQLSWESATERFLQ 432 (562)
Q Consensus 384 ~~~~~g~~~~d~~~la~~i~~ll~~~~~------~l~~~ar--~~~sw~~~~~~~~~ 432 (562)
++++||++++|.+++++.+..++++-+. .+.++.+ ++..|+..-++...
T Consensus 381 kh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~~~ 437 (444)
T KOG2941|consen 381 KHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWERTAL 437 (444)
T ss_pred hcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHhhh
Confidence 9999999999999999999999995443 4555555 67778777666543
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.67 E-value=3.7e-15 Score=153.20 Aligned_cols=236 Identities=13% Similarity=0.018 Sum_probs=142.6
Q ss_pred HhhcCcCCC-cEEEecCCchhhh-h-hch-HHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEE
Q 008544 154 TEIIPDEEA-DIAVLEEPEHLTW-F-HHG-KRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 229 (562)
Q Consensus 154 ~~~i~~~~p-DvV~~~~~~~~~~-~-~~~-~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 229 (562)
..++...++ |+||++.|..... + ... ..+.+.-.|++.++|+.++.... .... . .....++.+. ||.+
T Consensus 56 ~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~--~~~~----~-~~~~~~~~~~-aD~i 127 (333)
T PRK09814 56 DGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFD--SNYY----L-MKEEIDMLNL-ADVL 127 (333)
T ss_pred HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhcc--ccch----h-hHHHHHHHHh-CCEE
Confidence 344555666 9999999876542 1 111 12232223899999987654221 1111 1 2223333343 8999
Q ss_pred EEcChhhhccCCCc-cccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEE
Q 008544 230 IRLSAATQEYPNSI-VCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD 308 (562)
Q Consensus 230 i~~S~~~~~~~~~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ 308 (562)
|++|+.+++...+. +....-++...+......... ......+.++|+|++...+++ ....++++|+
T Consensus 128 I~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~i~yaG~l~k~~~l----------~~~~~~~~l~ 194 (333)
T PRK09814 128 IVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIELV---KTPSFQKKINFAGNLEKSPFL----------KNWSQGIKLT 194 (333)
T ss_pred EECCHHHHHHHHHcCCCcCceEeccccccccccccc---ccccCCceEEEecChhhchHH----------HhcCCCCeEE
Confidence 99999998854322 111010111222211100000 112235689999999843221 1134689999
Q ss_pred EEeCCCCHHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEcc-C----------CCCCcHHHHHHHHcCCcEEee
Q 008544 309 LYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPS-T----------TDVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 309 ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS-~----------~E~~~~~~lEAma~G~PVI~t 375 (562)
++|+|+..+ ....++.+.|..+.. .++|+. |+.+.+. . .-.+|.++.|+||||+|||++
T Consensus 195 i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~ 266 (333)
T PRK09814 195 VFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW 266 (333)
T ss_pred EECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC
Confidence 999998654 222346666654433 366776 6444432 1 125899999999999999999
Q ss_pred CCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHH
Q 008544 376 NHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQT 418 (562)
Q Consensus 376 ~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar 418 (562)
+.++ .+++.++.+|+++++.+++++++.++..+.-.+|+++++
T Consensus 267 ~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~~~~~~~m~~n~~ 310 (333)
T PRK09814 267 SKAAIADFIVENGLGFVVDSLEELPEIIDNITEEEYQEMVENVK 310 (333)
T ss_pred CCccHHHHHHhCCceEEeCCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9887 999999999999999999999999854322226777665
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.65 E-value=3.1e-16 Score=139.06 Aligned_cols=131 Identities=24% Similarity=0.280 Sum_probs=94.6
Q ss_pred ccEEEEEeeccccCCHHHHHH-HHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLG-LLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~-a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
...++++|++.+.|+++.+++ +++++.++.|+++|.++|.+++ ++++. . ..++++++..++..++++.||+++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~--~~~v~~~g~~~e~~~~l~~~dv~l~ 76 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-R--RPNVRFHGFVEELPEILAAADVGLI 76 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-H--HCTEEEE-S-HHHHHHHHC-SEEEE
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-c--CCCEEEcCCHHHHHHHHHhCCEEEE
Confidence 357889999999999999999 9999999999999999999776 34444 1 2267887777677799999999999
Q ss_pred ccC-CCCCcHHHHHHHHcCCcEEeeCCCCccccccCCce-EeeCCHHHHHHHHHHHHhC
Q 008544 352 PST-TDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNC-RTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 352 pS~-~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g-~~~~d~~~la~~i~~ll~~ 408 (562)
|+. .+++|++++|||++|+|||+++.+..+++.....+ ++.+|+++++++|.++++|
T Consensus 77 p~~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 77 PSRFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp -BSS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred EeeCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 985 77899999999999999999998555565544444 4457999999999999876
No 90
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=3.7e-14 Score=143.92 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=153.6
Q ss_pred ccEEEEcChhhhccC-----CC-ccccccccCCCCcCcchhhhHHhhcCCCCC--ccEEEEEeeccccCCHHHHHHHHHH
Q 008544 226 CHKVIRLSAATQEYP-----NS-IVCNVHGVNPKFLEIGEKKMEQQQNGNKAF--TKGAYYIGRMVWSKGYEELLGLLNI 297 (562)
Q Consensus 226 ad~vi~~S~~~~~~~-----~~-~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~--~~~il~vGr~~~~Kg~~~ll~a~~~ 297 (562)
.+.++..+....... .. .....++++...+... ......+ ...++++|++.+.||++.+++++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPA-------RIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAK 223 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCcc-------ccCCCcccCceEEEEeeccChhcCHHHHHHHHHH
Confidence 578888887664421 11 1122235665544431 1122222 3689999999999999999999999
Q ss_pred HHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCC--ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcE
Q 008544 298 YHKELAGLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 372 (562)
Q Consensus 298 l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 372 (562)
+....+++.+.++|.++. .+.+...+.+.+. .+.+.+... +...+++.+|++++||..|++|++++|||++|+||
T Consensus 224 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pv 303 (381)
T COG0438 224 LKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPV 303 (381)
T ss_pred hhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcE
Confidence 998877799999999887 3666667777664 244544444 45578888999999998899999999999999999
Q ss_pred EeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHHhcC
Q 008544 373 VCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 373 I~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~~~ 438 (562)
|+++.++ .+++.++.+|++++ |.+++++++..++++... .++++++ ..|+|+...+++.+.+....
T Consensus 304 i~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (381)
T COG0438 304 IASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEELL 378 (381)
T ss_pred EECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999986 88888877677654 589999999999998832 4443222 68999999999999887654
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.53 E-value=3.4e-13 Score=141.12 Aligned_cols=204 Identities=11% Similarity=0.035 Sum_probs=128.8
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
+..+.+.+++++||+|++.+....++. ....++..+ |++.++. -..+... ...++.+.+. ||+
T Consensus 78 ~~~~~~~l~~~kPd~vi~~g~~~~~~~--~a~aa~~~gip~v~~i~--P~~waw~-----------~~~~r~l~~~-~d~ 141 (385)
T TIGR00215 78 RKEVVQLAKQAKPDLLVGIDAPDFNLT--KELKKKDPGIKIIYYIS--PQVWAWR-----------KWRAKKIEKA-TDF 141 (385)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCccHH--HHHHHhhCCCCEEEEeC--CcHhhcC-----------cchHHHHHHH-HhH
Confidence 446788899999999999986444433 122333334 6664432 1111110 1114445554 899
Q ss_pred EEEcChhhhccCCCc----cccccccCCCCcCc-chhhhHHhhcCCCCCccEEEEEe--eccc-cCCHHHHHHHHHHHHH
Q 008544 229 VIRLSAATQEYPNSI----VCNVHGVNPKFLEI-GEKKMEQQQNGNKAFTKGAYYIG--RMVW-SKGYEELLGLLNIYHK 300 (562)
Q Consensus 229 vi~~S~~~~~~~~~~----~~~v~GVd~~~~~~-~~~~~~~~~~~~~~~~~~il~vG--r~~~-~Kg~~~ll~a~~~l~~ 300 (562)
+++.++..+++..+. ....|++....... ..+...++..+++++.++|+++| |..+ .|++..+++++..+.+
T Consensus 142 v~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~ 221 (385)
T TIGR00215 142 LLAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQ 221 (385)
T ss_pred hhccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHH
Confidence 999998877753321 11113332122111 12233345567777777776553 5555 7899999999999988
Q ss_pred hcCCcEEEEEe-CCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYG-NGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG-~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
..|++++++.+ .+...+.+++..+.++.. +.++.+ +..++|+.||++|.+| |.+++|+|+||+|+|...
T Consensus 222 ~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~y 293 (385)
T TIGR00215 222 QEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGY 293 (385)
T ss_pred hCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEE
Confidence 88999887754 444566667666665433 334433 5668999999999999 778889999999999884
No 92
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.53 E-value=4.5e-13 Score=141.76 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=122.0
Q ss_pred CccEEEEEeeccccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCC-----C----HHHHHHHHHhcCC--------ee
Q 008544 272 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGE-----D----FDQIQRAAKKLKL--------VV 330 (562)
Q Consensus 272 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~-----~----~~~l~~~~~~l~l--------~~ 330 (562)
+.++|++++|+++.||+...++|++++.+++|+ ++|+++|.+. + ..++++++.+.+. .+
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv 363 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPL 363 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccE
Confidence 478999999999999999999999999999996 6899998753 1 2455555555421 13
Q ss_pred EEeCCC---CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC----cEEeeCCCC-ccccccCCceEeeC--CHHHHHH
Q 008544 331 RVYPGR---DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVE 400 (562)
Q Consensus 331 ~~~~~~---~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~----PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~ 400 (562)
.++.+. ++...+|+.||+++.||..||++++..|+|||+. |+|.|+..| .+.+ .++++++ |++++++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l---~~AllVNP~d~~~~A~ 440 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL---KGALLTNPYDPVRMDE 440 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc---CCCEEECCCCHHHHHH
Confidence 444443 3344899999999999999999999999999998 999999987 5554 3567775 9999999
Q ss_pred HHHHHHhCCCC-C---ccHHHH--hcCCHHHHHHHHHHHH
Q 008544 401 ATLKALAEEPA-Q---PTDAQT--HQLSWESATERFLQVA 434 (562)
Q Consensus 401 ~i~~ll~~~~~-~---l~~~ar--~~~sw~~~~~~~~~~y 434 (562)
+|.++++.+.. + +.+... ..++-..-++.+++..
T Consensus 441 ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l 480 (487)
T TIGR02398 441 TIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAV 480 (487)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 99999998875 2 221111 5666666666666544
No 93
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.45 E-value=1.5e-11 Score=134.00 Aligned_cols=166 Identities=10% Similarity=0.065 Sum_probs=127.9
Q ss_pred CCCCccEEEEEeeccccCCHHHHHHHHHHHHH--hc--CCcEEEEEeCCCC--------HHHHHHHHHh--cCCeeEEeC
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEELLGLLNIYHK--EL--AGLEMDLYGNGED--------FDQIQRAAKK--LKLVVRVYP 334 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~--~~--~~~~l~ivG~g~~--------~~~l~~~~~~--l~l~~~~~~ 334 (562)
..++.+++.+++|+..+||.+++++++.++.+ .. .++++++.|.+.. .+.+.+.+++ ...++.|+.
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~ 464 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLE 464 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 34567799999999999999999999988875 22 3699999999763 3455555555 344566777
Q ss_pred CCCChH--HHHhhcCEEEE-ccC-CCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--------------CH
Q 008544 335 GRDHAD--PIFHDYKVFLN-PST-TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------GR 395 (562)
Q Consensus 335 ~~~~~~--~l~~~adv~v~-pS~-~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--------------d~ 395 (562)
+++..- .+++.+|++++ ||. .|..|++-+=||..|.+.+++--|. .|.. ++.|||.+. |.
T Consensus 465 ~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da 543 (601)
T TIGR02094 465 NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDA 543 (601)
T ss_pred CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCH
Confidence 765444 88999999999 998 9999999999999999999997665 5554 678999864 67
Q ss_pred HHHHHHHHHHH-----hCCC-----C--CccHHHH-h---cCCHHHHHHHHHHHHH
Q 008544 396 NGFVEATLKAL-----AEEP-----A--QPTDAQT-H---QLSWESATERFLQVAE 435 (562)
Q Consensus 396 ~~la~~i~~ll-----~~~~-----~--~l~~~ar-~---~~sw~~~~~~~~~~y~ 435 (562)
++|.++|++.+ +++. . .|.+++. . .|||++++++|.+.|-
T Consensus 544 ~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 544 EALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 78999887655 2222 1 4555555 3 6999999999999873
No 94
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.45 E-value=5.7e-13 Score=143.31 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=130.7
Q ss_pred ccEEEEEe--eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCH---HHHHHHHHhcCCe------------------
Q 008544 273 TKGAYYIG--RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF---DQIQRAAKKLKLV------------------ 329 (562)
Q Consensus 273 ~~~il~vG--r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~---~~l~~~~~~l~l~------------------ 329 (562)
...+++++ |+ +.|.++.+|+++.++..+.|+++|.+.|.+.+. +.+++.++++++.
T Consensus 319 ~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 34677888 99 999999999999999999999999999987643 5665665555333
Q ss_pred -----------eEE-e-CCCC--ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCC
Q 008544 330 -----------VRV-Y-PGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDG 394 (562)
Q Consensus 330 -----------~~~-~-~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d 394 (562)
.++ + +... ++.+.|..+.++|.+|..|+|+ +.+||++.|+|+| +.+..++|.++.||++++|
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d 474 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDD 474 (519)
T ss_pred cccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCC
Confidence 333 3 4355 6779999999999999999999 9999999999999 5566999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHH
Q 008544 395 RNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQV 433 (562)
Q Consensus 395 ~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~ 433 (562)
.++|++++..+|.++.. ++...+. ++||-+++.+++.+.
T Consensus 475 ~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 475 ISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 99999999999999865 5555554 788888888777653
No 95
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.42 E-value=1.1e-11 Score=139.23 Aligned_cols=262 Identities=10% Similarity=0.009 Sum_probs=164.2
Q ss_pred CcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc-
Q 008544 162 ADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE- 238 (562)
Q Consensus 162 pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~- 238 (562)
-|+|.+|....+ .+ ...+..+.. ++-+.+|..|+...-..-.. ..+.+.+-+. .||.|=..+.....
T Consensus 232 gD~VWVHDYHL~-Ll--P~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP-----~r~elL~glL--~aDlIGFqT~~y~rh 301 (934)
T PLN03064 232 GDVVWCHDYHLM-FL--PKCLKEYNSNMKVGWFLHTPFPSSEIHRTLP-----SRSELLRSVL--AADLVGFHTYDYARH 301 (934)
T ss_pred CCEEEEecchhh-HH--HHHHHHhCCCCcEEEEecCCCCChHHHhhCC-----cHHHHHHHHh--cCCeEEeCCHHHHHH
Confidence 379999986544 33 333444433 67778888877644221111 1111212222 25766666644433
Q ss_pred cC------------------CCcccc----ccccCCCCcCcchhh--------hHHhhcCCCCCccEEEEEeeccccCCH
Q 008544 239 YP------------------NSIVCN----VHGVNPKFLEIGEKK--------MEQQQNGNKAFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 239 ~~------------------~~~~~~----v~GVd~~~~~~~~~~--------~~~~~~~~~~~~~~il~vGr~~~~Kg~ 288 (562)
+. ....+. ..|||++.|...... ..+... .+.++|+.++|+++.||+
T Consensus 302 Fl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~---~g~kiIlgVDRLD~~KGI 378 (934)
T PLN03064 302 FVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERF---AGRKVMLGVDRLDMIKGI 378 (934)
T ss_pred HHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHh---CCceEEEEeeccccccCH
Confidence 10 011111 138888766432111 111112 246799999999999999
Q ss_pred HHHHHHHHHHHHhcCCcE--EEEE-------eCCCCHHHHH----HHHHhcCC--------eeEEeCC---CCChHHHHh
Q 008544 289 EELLGLLNIYHKELAGLE--MDLY-------GNGEDFDQIQ----RAAKKLKL--------VVRVYPG---RDHADPIFH 344 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~--l~iv-------G~g~~~~~l~----~~~~~l~l--------~~~~~~~---~~~~~~l~~ 344 (562)
...+.|++++.+++|+++ ++++ +++++.++++ +++.+.+. .+.++.. .++...+|+
T Consensus 379 ~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~ 458 (934)
T PLN03064 379 PQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYA 458 (934)
T ss_pred HHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHH
Confidence 999999999999999864 6666 4444444433 33333321 1333222 334448999
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCC----cEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---Ccc
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGK----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPT 414 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~----PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~ 414 (562)
.||+++.||..||++++..|||||+. ++|.|+..| .+.+ +.++++++ |+++++++|.++++.+.. .+.
T Consensus 459 ~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~ 536 (934)
T PLN03064 459 VTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKRH 536 (934)
T ss_pred hCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999944 444477776 6666 44677775 999999999999996553 222
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHhcC
Q 008544 415 DAQT---HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 415 ~~ar---~~~sw~~~~~~~~~~y~~~~ 438 (562)
++.+ ..++|...++.+++..+.+.
T Consensus 537 ~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 537 RHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 2232 78899999999887766554
No 96
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.22 E-value=1.6e-11 Score=101.15 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=78.1
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH----hc
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----HQ 420 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar----~~ 420 (562)
++++|+..++++..++|+||||+|||+++.++ .+++.++..++.++|++++.+++..+++|+++ +++++++ ++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999987 88899999999999999999999999999987 7888877 79
Q ss_pred CCHHHHHHHHHH
Q 008544 421 LSWESATERFLQ 432 (562)
Q Consensus 421 ~sw~~~~~~~~~ 432 (562)
|+|+..++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999999874
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.21 E-value=1.9e-09 Score=111.40 Aligned_cols=250 Identities=12% Similarity=0.047 Sum_probs=135.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 229 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 229 (562)
..+..+++++.+||+||.+..+... ...++.++..+-..+|+.... . ...++.+.++ ++++
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Ggy~s~----p~~~aa~~~~~p~~i~e~n~~------~--------g~~nr~~~~~-a~~v 140 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGGFVSV----PVVIGGWLNRVPVLLHESDMT------P--------GLANKIALRF-ASKI 140 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCchhhH----HHHHHHHHcCCCEEEECCCCC------c--------cHHHHHHHHh-hCEE
Confidence 4456677899999999998765431 112333333333344543211 0 1123344454 7877
Q ss_pred EEcChhhhc-cCCCcccccccc--CCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHH-HHHHHHHHHhcCCc
Q 008544 230 IRLSAATQE-YPNSIVCNVHGV--NPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEEL-LGLLNIYHKELAGL 305 (562)
Q Consensus 230 i~~S~~~~~-~~~~~~~~v~GV--d~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~l-l~a~~~l~~~~~~~ 305 (562)
++.-+...+ ++.+.+. +.|. ...+.... +.......+.+++.++|+.+|.-.-.+.+..+ .+++..+. .++
T Consensus 141 ~~~f~~~~~~~~~~k~~-~tG~Pvr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~ 215 (352)
T PRK12446 141 FVTFEEAAKHLPKEKVI-YTGSPVREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKY 215 (352)
T ss_pred EEEccchhhhCCCCCeE-EECCcCCccccccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCc
Confidence 665444433 3333322 2343 33443322 22233445666667777776654334444332 23333332 246
Q ss_pred EEEEE-eCCCCHHHHHHHHHhcCCeeEEeCCC-CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC-----
Q 008544 306 EMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP----- 378 (562)
Q Consensus 306 ~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~~-~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~----- 378 (562)
++++. |.. +.++... ... ...+++.. +++.++|+.||++|.- +-++++.|++++|+|.|.-..+
T Consensus 216 ~vv~~~G~~-~~~~~~~---~~~-~~~~~~f~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 216 QIVHLCGKG-NLDDSLQ---NKE-GYRQFEYVHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred EEEEEeCCc-hHHHHHh---hcC-CcEEecchhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 66554 432 2222221 111 23445555 5788999999998854 4588999999999999988432
Q ss_pred C-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHH
Q 008544 379 S-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVA 434 (562)
Q Consensus 379 ~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y 434 (562)
+ .+.+.+...+.... +++.+.+++.++++|++. +.+ ..+.+.....++++.+..
T Consensus 287 ~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~-~~~-~~~~~~~~~aa~~i~~~i 349 (352)
T PRK12446 287 GDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEK-YKT-ALKKYNGKEAIQTIIDHI 349 (352)
T ss_pred chHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH-HHH-HHHHcCCCCHHHHHHHHH
Confidence 1 33445555555542 688999999999876543 222 223344445555555543
No 98
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=3.2e-09 Score=108.87 Aligned_cols=239 Identities=16% Similarity=0.132 Sum_probs=145.1
Q ss_pred hHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhcc
Q 008544 149 AVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 227 (562)
Q Consensus 149 ~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 227 (562)
...+.++.+++.+||+|+....+... .....+...+ |++....+..+. ..+++..+. ++
T Consensus 79 ~~~~a~~il~~~kPd~vig~Ggyvs~---P~~~Aa~~~~iPv~ihEqn~~~G----------------~ank~~~~~-a~ 138 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGGYVSG---PVGIAAKLLGIPVIIHEQNAVPG----------------LANKILSKF-AK 138 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCCcccc---HHHHHHHhCCCCEEEEecCCCcc----------------hhHHHhHHh-hc
Confidence 35567888999999999998776551 1122333333 555444322211 224445554 66
Q ss_pred EEEEcChhhhccCCC-ccccc-cccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcC-C
Q 008544 228 KVIRLSAATQEYPNS-IVCNV-HGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELA-G 304 (562)
Q Consensus 228 ~vi~~S~~~~~~~~~-~~~~v-~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~-~ 304 (562)
.|.+.-+....+..+ ....+ +.|..++.. ......+ ..+.. +.++|+.+|.-. |...+-+++..+..... +
T Consensus 139 ~V~~~f~~~~~~~~~~~~~~tG~Pvr~~~~~-~~~~~~~-~~~~~-~~~~ilV~GGS~---Ga~~ln~~v~~~~~~l~~~ 212 (357)
T COG0707 139 KVASAFPKLEAGVKPENVVVTGIPVRPEFEE-LPAAEVR-KDGRL-DKKTILVTGGSQ---GAKALNDLVPEALAKLANR 212 (357)
T ss_pred eeeeccccccccCCCCceEEecCcccHHhhc-cchhhhh-hhccC-CCcEEEEECCcc---hhHHHHHHHHHHHHHhhhC
Confidence 666554443443332 12111 234445543 2221111 12112 467777776533 44444444444433333 4
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC-C----
Q 008544 305 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP-S---- 379 (562)
Q Consensus 305 ~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~-~---- 379 (562)
++++...+..+.+++++...+++. .++.+..+++.++|+.+|++|.= .-++++.|.+++|+|+|--..+ +
T Consensus 213 ~~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIsR----aGa~Ti~E~~a~g~P~IliP~p~~~~~~ 287 (357)
T COG0707 213 IQVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAADLVISR----AGALTIAELLALGVPAILVPYPPGADGH 287 (357)
T ss_pred eEEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEeC----CcccHHHHHHHhCCCEEEeCCCCCccch
Confidence 666665543336777777777776 77888899999999999999954 3579999999999999887554 2
Q ss_pred ----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 380 ----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 380 ----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
...+.+...+.+++ +++.+.+.|.+++++++. .|.++++
T Consensus 288 Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~ 336 (357)
T COG0707 288 QEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAK 336 (357)
T ss_pred HHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34556667777764 567999999999998665 7766666
No 99
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.17 E-value=1.6e-09 Score=114.36 Aligned_cols=103 Identities=11% Similarity=0.041 Sum_probs=68.0
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceE-eeC----CHHHHHHHHHHHH
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCR-TYD----GRNGFVEATLKAL 406 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~-~~~----d~~~la~~i~~ll 406 (562)
+..+++..||+.|+||++|++|.+.+|+.++|+|.|+|+..| .+.+.+ ...|. +++ +.++.++.|.+.+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l 541 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFL 541 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 445999999999999999999999999999999999999876 344432 23444 332 6666555555554
Q ss_pred h----CCCC---CccHHHH---hcCCHHHHHHHHHHHHHhcCcc
Q 008544 407 A----EEPA---QPTDAQT---HQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 407 ~----~~~~---~l~~~ar---~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
. .... .++.++. ..++|+.....|.++|+.+...
T Consensus 542 ~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 542 YKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp HHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3 3322 2233333 8899999999999999988743
No 100
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.07 E-value=1.2e-08 Score=101.92 Aligned_cols=261 Identities=13% Similarity=0.126 Sum_probs=150.8
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+|.+++..-...|--.+.+.+|+.|.++| ++|++++.... ......++.. .
T Consensus 1 ~i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g-~~v~f~~~~~~-----------------~~~~~~i~~~-----g---- 53 (279)
T TIGR03590 1 KILFRADASSEIGLGHVMRCLTLARALHAQG-AEVAFACKPLP-----------------GDLIDLLLSA-----G---- 53 (279)
T ss_pred CEEEEecCCccccccHHHHHHHHHHHHHHCC-CEEEEEeCCCC-----------------HHHHHHHHHc-----C----
Confidence 6899999986666677788899999998887 99999977210 1100111111 1
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQ 210 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 210 (562)
+.+...+... ........+.+.+++.+||++++.+......+ ...++. ..+.+..+- ++....
T Consensus 54 ~~v~~~~~~~----~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~--~~~~k~-~~~~l~~iD-D~~~~~--------- 116 (279)
T TIGR03590 54 FPVYELPDES----SRYDDALELINLLEEEKFDILIVDHYGLDADW--EKLIKE-FGRKILVID-DLADRP--------- 116 (279)
T ss_pred CeEEEecCCC----chhhhHHHHHHHHHhcCCCEEEEcCCCCCHHH--HHHHHH-hCCeEEEEe-cCCCCC---------
Confidence 1111111100 00001223667788889999999876433222 122222 234444443 221100
Q ss_pred HHHHHHHHHHHHHHhccEEEEcChhhhc--cC---CCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeecccc
Q 008544 211 AFLLEFVNSWLARVHCHKVIRLSAATQE--YP---NSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWS 285 (562)
Q Consensus 211 ~~~~~~~~~~~~~~~ad~vi~~S~~~~~--~~---~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~ 285 (562)
..||.++-.+..... +. ........|.+.-.+.+.-....+......+...++++.|.....
T Consensus 117 -------------~~~D~vin~~~~~~~~~y~~~~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~~~~~iLi~~GG~d~~ 183 (279)
T TIGR03590 117 -------------HDCDLLLDQNLGADASDYQGLVPANCRLLLGPSYALLREEFYQLATANKRRKPLRRVLVSFGGADPD 183 (279)
T ss_pred -------------cCCCEEEeCCCCcCHhHhcccCcCCCeEEecchHHhhhHHHHHhhHhhhcccccCeEEEEeCCcCCc
Confidence 037888877654222 11 111222336544332221111111111111224578899988887
Q ss_pred CCHHHHHHHHHHHHHhcCCcEE-EEEeCC-CCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHH
Q 008544 286 KGYEELLGLLNIYHKELAGLEM-DLYGNG-EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATA 363 (562)
Q Consensus 286 Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g-~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~l 363 (562)
+....+++++..+. +++++ +++|.+ +..+++++.++..+ ++++++..+++.++|+.||++|.+ .|.++.
T Consensus 184 ~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is~-----~G~T~~ 254 (279)
T TIGR03590 184 NLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIGA-----AGSTSW 254 (279)
T ss_pred CHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEEC-----CchHHH
Confidence 76778888886543 34443 356765 44678888876644 577788888999999999999985 368999
Q ss_pred HHHHcCCcEEeeCC
Q 008544 364 EALAMGKIVVCANH 377 (562)
Q Consensus 364 EAma~G~PVI~t~~ 377 (562)
|++++|+|+|+-..
T Consensus 255 E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 255 ERCCLGLPSLAICL 268 (279)
T ss_pred HHHHcCCCEEEEEe
Confidence 99999999998755
No 101
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.06 E-value=2.2e-08 Score=111.44 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCCccEEEEEeeccccCCHHHHHHHHHHHHHhc----CCcEEEEEeCCCC--H------HHHHHHHH--hcCCeeEEeCC
Q 008544 270 KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKEL----AGLEMDLYGNGED--F------DQIQRAAK--KLKLVVRVYPG 335 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~g~~--~------~~l~~~~~--~l~l~~~~~~~ 335 (562)
.++..+|.|+.|+..+|+.++++..+.++.+-. .++++++.|.+.. . +.+.+.++ +...++.|+.+
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~ 554 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLED 554 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcC
Confidence 345668999999999999999999988885521 3599999999652 1 24444444 22335666677
Q ss_pred CCChH--HHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--------------CHH
Q 008544 336 RDHAD--PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------GRN 396 (562)
Q Consensus 336 ~~~~~--~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--------------d~~ 396 (562)
++..- .+++.+|++++||+ .|..|++-+=||..|.+-+++--|- .|.. ++.|||.++ |.+
T Consensus 555 Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~ 633 (778)
T cd04299 555 YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAE 633 (778)
T ss_pred CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHH
Confidence 65443 88999999999999 9999999999999999999997775 5555 789999863 345
Q ss_pred HHHHHHHHHHh----CC------CC--CccHHHH----hcCCHHHHHHHHHHHHH
Q 008544 397 GFVEATLKALA----EE------PA--QPTDAQT----HQLSWESATERFLQVAE 435 (562)
Q Consensus 397 ~la~~i~~ll~----~~------~~--~l~~~ar----~~~sw~~~~~~~~~~y~ 435 (562)
+|.+.|++.+- +. .. +|-+++. ..|||.+++++|.+-|-
T Consensus 634 ~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 634 ALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 66677754332 32 22 4444444 48999999999987544
No 102
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=1.8e-07 Score=95.12 Aligned_cols=250 Identities=13% Similarity=0.039 Sum_probs=154.3
Q ss_pred HHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCC-EEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEE
Q 008544 153 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRF-VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 231 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~-vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 231 (562)
+++++...+||++++.+.+.+.-+ .....++..| ++..-.-....+..+. +........+... |.|++
T Consensus 115 v~rFl~~~~P~l~Ii~EtElWPnl--i~e~~~~~~p~~LvNaRLS~rS~~~y~-------k~~~~~~~~~~~i--~li~a 183 (419)
T COG1519 115 VRRFLRKWRPKLLIIMETELWPNL--INELKRRGIPLVLVNARLSDRSFARYA-------KLKFLARLLFKNI--DLILA 183 (419)
T ss_pred HHHHHHhcCCCEEEEEeccccHHH--HHHHHHcCCCEEEEeeeechhhhHHHH-------HHHHHHHHHHHhc--ceeee
Confidence 677888899998777665444222 1112222224 3333322222233221 2233334444554 99999
Q ss_pred cChhhhccCCCc-c--ccccc---cCCCCcCcc--hhhhHHhhcCCCCCccEEEEEeeccccCCHH-HHHHHHHHHHHhc
Q 008544 232 LSAATQEYPNSI-V--CNVHG---VNPKFLEIG--EKKMEQQQNGNKAFTKGAYYIGRMVWSKGYE-ELLGLLNIYHKEL 302 (562)
Q Consensus 232 ~S~~~~~~~~~~-~--~~v~G---Vd~~~~~~~--~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~-~ll~a~~~l~~~~ 302 (562)
.|+..++.+.+. . +.+.| .|.+.-+.. .....+...+. ..++++..+. +.|=+ .+++++..+++++
T Consensus 184 Qse~D~~Rf~~LGa~~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~--~r~v~iaaST---H~GEeei~l~~~~~l~~~~ 258 (419)
T COG1519 184 QSEEDAQRFRSLGAKPVVVTGNLKFDIEPPPQLAAELAALRRQLGG--HRPVWVAAST---HEGEEEIILDAHQALKKQF 258 (419)
T ss_pred cCHHHHHHHHhcCCcceEEecceeecCCCChhhHHHHHHHHHhcCC--CCceEEEecC---CCchHHHHHHHHHHHHhhC
Confidence 999888843221 1 11111 222221111 11112222222 2567666665 45554 5889999999999
Q ss_pred CCcEEEEEeCCCCH-HHHHHHHHhcCCeeEEeCC---------------CCChHHHHhhcCEE-EEccCCCCCcHHHHHH
Q 008544 303 AGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPG---------------RDHADPIFHDYKVF-LNPSTTDVVCTATAEA 365 (562)
Q Consensus 303 ~~~~l~ivG~g~~~-~~l~~~~~~l~l~~~~~~~---------------~~~~~~l~~~adv~-v~pS~~E~~~~~~lEA 365 (562)
||..++++-..+++ +.+++++++.|+.+..... .-++..+|..+|+. |--|..+.-|--++|+
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEp 338 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEP 338 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhH
Confidence 99999999998885 8899999999887543211 11233788899954 5558777779999999
Q ss_pred HHcCCcEEeeCCCC-----ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 366 LAMGKIVVCANHPS-----NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 366 ma~G~PVI~t~~~~-----~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
.++|+|||.-.+-. .+.+.+...++.++|.+.++.++..+++|+.. +|++++.
T Consensus 339 a~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~~~r~~~~~~~~ 398 (419)
T COG1519 339 AAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADEDKREAYGRAGL 398 (419)
T ss_pred HHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999997753 44455667788999988888888888777554 5555554
No 103
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.96 E-value=7.3e-09 Score=109.17 Aligned_cols=126 Identities=11% Similarity=0.243 Sum_probs=104.7
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCC-CC-ChHHHHhhcCEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG-RD-HADPIFHDYKVF 349 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~-~~-~~~~l~~~adv~ 349 (562)
...++.++. +..|++++.+.++.|+++|.| |.+.+ ...|.++ .+. .++..+.+ .. +..++|..||++
T Consensus 282 ~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dly 351 (438)
T TIGR02919 282 RKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIY 351 (438)
T ss_pred cccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEE
Confidence 345666662 899999999999999999999 77766 6788887 666 35666666 44 677999999999
Q ss_pred EEccCCCCCcHHHHHHHHcCCcEEeeCCCC--ccccccCCceEee--CCHHHHHHHHHHHHhCCCC
Q 008544 350 LNPSTTDVVCTATAEALAMGKIVVCANHPS--NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA 411 (562)
Q Consensus 350 v~pS~~E~~~~~~lEAma~G~PVI~t~~~~--~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~ 411 (562)
+..|..|++++++.||++.|+|||+.+... .+++.+ |.++ +|+++|+++|.+++.++..
T Consensus 352 Ldin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 352 LDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred EEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999998873 677765 5554 5999999999999998864
No 104
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.90 E-value=1.6e-07 Score=99.19 Aligned_cols=121 Identities=17% Similarity=0.005 Sum_probs=75.6
Q ss_pred ccEEEEEeecccc---CCHHHHHHHHHHHHHhcCCcEE-EEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCE
Q 008544 273 TKGAYYIGRMVWS---KGYEELLGLLNIYHKELAGLEM-DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 348 (562)
Q Consensus 273 ~~~il~vGr~~~~---Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv 348 (562)
..+++..|+.... +-...+++++. .. +.++ +..|...... .....++.+.+ +.+..+++..||+
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~----~~-~~~~i~~~g~~~~~~------~~~~~~v~~~~-~~p~~~ll~~~d~ 307 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVA----TL-GQRAILSLGWGGLGA------EDLPDNVRVVD-FVPHDWLLPRCAA 307 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHH----Hc-CCeEEEEccCccccc------cCCCCceEEeC-CCCHHHHhhhhhe
Confidence 4566677776442 23334444443 22 4454 4455543222 12222344433 3567789999999
Q ss_pred EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCC
Q 008544 349 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEE 409 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~ 409 (562)
+|.- +-..++.||+++|+|+|...... .+.+.+...|...+ +++++.+++.++++++
T Consensus 308 ~I~h----gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~ 373 (401)
T cd03784 308 VVHH----GGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP 373 (401)
T ss_pred eeec----CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH
Confidence 9933 44689999999999999996654 44455555566542 7899999999998853
No 105
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.83 E-value=6.2e-09 Score=95.74 Aligned_cols=167 Identities=19% Similarity=0.168 Sum_probs=84.3
Q ss_pred EEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCccc
Q 008544 54 IFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDT 133 (562)
Q Consensus 54 ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 133 (562)
+++..+.+..||++..+.+++++|.++| |+|+++++....... .. .. ..... ...
T Consensus 2 li~~~~~~~~GG~e~~~~~l~~~l~~~G-~~v~v~~~~~~~~~~----~~-------~~----------~~~~~---~~~ 56 (177)
T PF13439_consen 2 LITNIFLPNIGGAERVVLNLARALAKRG-HEVTVVSPGVKDPIE----EE-------LV----------KIFVK---IPY 56 (177)
T ss_dssp EEECC-TTSSSHHHHHHHHHHHHHHHTT--EEEEEESS-TTS-S----ST-------EE----------EE------TT-
T ss_pred EEEEecCCCCChHHHHHHHHHHHHHHCC-CEEEEEEcCCCccch----hh-------cc----------ceeee---eec
Confidence 4455566889999999999999999998 999999884311100 00 00 00000 000
Q ss_pred ccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHH-HHhhhhchHHHHH
Q 008544 134 RFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLE-YVKREKNDRLQAF 212 (562)
Q Consensus 134 ~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~-~~~~~~~~~~~~~ 212 (562)
.. . ............+.+.+++.+||+||++.+....+. ..... ..|.+.++|+.+.. .......... ..
T Consensus 57 ~~-~---~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~---~~~~~-~~~~v~~~H~~~~~~~~~~~~~~~~-~~ 127 (177)
T PF13439_consen 57 PI-R---KRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIA---LLACR-KVPIVYTIHGPYFERRFLKSKLSPY-SY 127 (177)
T ss_dssp SS-T---SS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHH---HHHHH-CSCEEEEE-HHH--HHTTTTSCCCH-HH
T ss_pred cc-c---cccchhHHHHHHHHHHHHHcCCCeEEecccchhHHH---HHhcc-CCCEEEEeCCCcccccccccccchh-hh
Confidence 00 0 001112222445777888889999999987655222 11222 35899999976531 1111111111 11
Q ss_pred HHHHHHHHHHHHhccEEEEcChhhhcc------CCCcccc-ccccCCCCc
Q 008544 213 LLEFVNSWLARVHCHKVIRLSAATQEY------PNSIVCN-VHGVNPKFL 255 (562)
Q Consensus 213 ~~~~~~~~~~~~~ad~vi~~S~~~~~~------~~~~~~~-v~GVd~~~~ 255 (562)
+...+...+.+ .+|.++++|+.+++. +.+.+.. .||||.+.|
T Consensus 128 ~~~~~~~~~~~-~~~~ii~vS~~~~~~l~~~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 128 LNFRIERKLYK-KADRIIAVSESTKDELIKFGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp HHHCTTHHHHC-CSSEEEESSHHHHHHHHHHT--SS-EEE----B-CCCH
T ss_pred hhhhhhhhHHh-cCCEEEEECHHHHHHHHHhCCcccCCEEEECCccHHHc
Confidence 22222222222 379999999988883 2333433 469998876
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.82 E-value=1.3e-07 Score=99.22 Aligned_cols=241 Identities=15% Similarity=0.023 Sum_probs=138.1
Q ss_pred hHHhhcCcC--CCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHh---------hhh-chHHHHHHHHHHHH
Q 008544 152 DITEIIPDE--EADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVK---------REK-NDRLQAFLLEFVNS 219 (562)
Q Consensus 152 ~l~~~i~~~--~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~---------~~~-~~~~~~~~~~~~~~ 219 (562)
.-.+.+++. +||+|+....... .+ .-|..+...++.-.|........ +++ .|.....+ . -++
T Consensus 82 ~~~~~~~~~~~~p~~v~~~Gg~v~-~~---aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e-~n~ 155 (396)
T TIGR03492 82 GQWRALRKWAKKGDLIVAVGDIVP-LL---FAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-E-RWL 155 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECcHHH-HH---HHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-H-HHH
Confidence 344556677 9999999887663 22 11333323344333432110000 000 11111112 1 133
Q ss_pred HHHHHhccEEEEcChhhhccCCCc-cccc-cccCC-CCcCcchhhhHHhhcCCCCCccEEE-EEeec--cccCCHHHHHH
Q 008544 220 WLARVHCHKVIRLSAATQEYPNSI-VCNV-HGVNP-KFLEIGEKKMEQQQNGNKAFTKGAY-YIGRM--VWSKGYEELLG 293 (562)
Q Consensus 220 ~~~~~~ad~vi~~S~~~~~~~~~~-~~~v-~GVd~-~~~~~~~~~~~~~~~~~~~~~~~il-~vGr~--~~~Kg~~~ll~ 293 (562)
...+ .|+.+++..+...+...+. .... .|-.. +.+....+ .+++++.+.++ +-|.- ...+++..+++
T Consensus 156 l~~~-~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~------~~l~~~~~~lllLpGSR~ae~~~~lp~~l~ 228 (396)
T TIGR03492 156 MRSR-RCLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPER------KPLLTGRFRIALLPGSRPPEAYRNLKLLLR 228 (396)
T ss_pred hhch-hhCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCccccc------cccCCCCCEEEEECCCCHHHHHccHHHHHH
Confidence 3334 4899998887777754421 2111 12111 11111111 03333344444 44432 23467889999
Q ss_pred HHHHHHHhcCCcEEEEEe-CCCCHHHHHHHHHhcCCe----------------eEEeCCCCChHHHHhhcCEEEEccCCC
Q 008544 294 LLNIYHKELAGLEMDLYG-NGEDFDQIQRAAKKLKLV----------------VRVYPGRDHADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 294 a~~~l~~~~~~~~l~ivG-~g~~~~~l~~~~~~l~l~----------------~~~~~~~~~~~~l~~~adv~v~pS~~E 356 (562)
++..+.++ +++++++.- .+.+.+.+++...+.+.. +.+.....+..++|+.||++|..|
T Consensus 229 al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS--- 304 (396)
T TIGR03492 229 ALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA--- 304 (396)
T ss_pred HHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc---
Confidence 99999766 788887654 445567777766655543 344566677889999999999886
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC----cccccc-----CCceEeeC-CHHHHHHHHHHHHhCCCC
Q 008544 357 VVCTATAEALAMGKIVVCANHPS----NDFFKQ-----FPNCRTYD-GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~----~e~v~~-----~~~g~~~~-d~~~la~~i~~ll~~~~~ 411 (562)
|.+..|++++|+|+|....++ ..+.+. +....+.+ +++.+++++.++++|++.
T Consensus 305 --Gt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 305 --GTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred --CHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 567799999999999987443 233333 33333333 789999999999988654
No 107
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.81 E-value=2.2e-07 Score=94.80 Aligned_cols=113 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC-CChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~-~~~~~l~~~adv~v~ 351 (562)
..+++++|..... .+++++ +..++.+++++|.+.... ...++++.... .+..++|..||++|.
T Consensus 193 ~~iLv~~gg~~~~----~~~~~l----~~~~~~~~~v~g~~~~~~--------~~~ni~~~~~~~~~~~~~m~~ad~vIs 256 (318)
T PF13528_consen 193 PKILVYFGGGGPG----DLIEAL----KALPDYQFIVFGPNAADP--------RPGNIHVRPFSTPDFAELMAAADLVIS 256 (318)
T ss_pred CEEEEEeCCCcHH----HHHHHH----HhCCCCeEEEEcCCcccc--------cCCCEEEeecChHHHHHHHHhCCEEEE
Confidence 5678899987555 555655 346688999998752111 13346665543 788899999999996
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-------ccccccCCceEeeC----CHHHHHHHHHHH
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-------NDFFKQFPNCRTYD----GRNGFVEATLKA 405 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-------~e~v~~~~~g~~~~----d~~~la~~i~~l 405 (562)
.. --+++.||+++|+|+|+-...+ .+.+++...|...+ +++.|.+.|+++
T Consensus 257 ~~----G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 257 KG----GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CC----CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 64 2446999999999999997643 34444555555543 778888877653
No 108
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.76 E-value=1.9e-06 Score=89.63 Aligned_cols=261 Identities=12% Similarity=0.092 Sum_probs=135.6
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
+..+.+++.+.+||+|++++.....+- +...+...+ |++ .+|.....+.. .-...+..+.+. +|.
T Consensus 82 ~~~~~~~~~~~~Pd~vlv~GD~~~~la--~alaA~~~~IPv~-HveaG~rs~~~----------~eE~~r~~i~~l-a~l 147 (365)
T TIGR03568 82 IIGFSDAFERLKPDLVVVLGDRFEMLA--AAIAAALLNIPIA-HIHGGEVTEGA----------IDESIRHAITKL-SHL 147 (365)
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHhCCcEE-EEECCccCCCC----------chHHHHHHHHHH-Hhh
Confidence 456788899999999999986544222 344555555 444 44433221110 011122233333 677
Q ss_pred EEEcChhhhcc-C-----CCccccc--cccCCCC-cCcchhhhHHhhcCCCCCccEE-EEEeecc--ccCCHHHHHHHHH
Q 008544 229 VIRLSAATQEY-P-----NSIVCNV--HGVNPKF-LEIGEKKMEQQQNGNKAFTKGA-YYIGRMV--WSKGYEELLGLLN 296 (562)
Q Consensus 229 vi~~S~~~~~~-~-----~~~~~~v--~GVd~~~-~~~~~~~~~~~~~~~~~~~~~i-l~vGr~~--~~Kg~~~ll~a~~ 296 (562)
.++.++..++. . .+.+.++ .++|.-. .............+++.+.+++ +.+-+-. .....+.+.+.++
T Consensus 148 ~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~ 227 (365)
T TIGR03568 148 HFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLK 227 (365)
T ss_pred ccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHH
Confidence 77777666663 1 2222222 2444311 1111122333445554333443 3333321 2233333434444
Q ss_pred HHHHhcCCcEEEEEeCCCCHHHHHHHHHhc---CCeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCc
Q 008544 297 IYHKELAGLEMDLYGNGEDFDQIQRAAKKL---KLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKI 371 (562)
Q Consensus 297 ~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l---~l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~P 371 (562)
.+.+...++.++.-..++..+.+.+.+.++ ..++++.+. +.+...+++.|+++|--|. ..+.||.++|+|
T Consensus 228 ~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS-----ggi~EA~~lg~P 302 (365)
T TIGR03568 228 ALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNSS-----SGIIEAPSFGVP 302 (365)
T ss_pred HHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcCh-----hHHHhhhhcCCC
Confidence 443332244332222223333333333322 123666654 5566699999999995542 234899999999
Q ss_pred EEeeCCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHH
Q 008544 372 VVCANHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQV 433 (562)
Q Consensus 372 VI~t~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~~~~~~~~ 433 (562)
||+- +. +|.+..+.+.+.++ |++++.+++.+++ ++.. .+ .....-|......+|+.++
T Consensus 303 vv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~~~-~~~~~~~~-~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 303 TINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEKLL-DPAFKKSL-KNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred EEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHHHh-ChHHHHHH-hhCCCCCCCChHHHHHHHh
Confidence 9955 34 77777788888675 9999999999954 3221 11 1111346566677776653
No 109
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.69 E-value=4.5e-07 Score=96.56 Aligned_cols=262 Identities=11% Similarity=0.064 Sum_probs=134.2
Q ss_pred CCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc
Q 008544 161 EADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 238 (562)
Q Consensus 161 ~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 238 (562)
.-|+|.+|....+ .+ ...+.++.. ++.+..|+.|+...-..-.. ..+.+.+-+. .||.|-..+....+
T Consensus 141 ~~D~VWVhDYhL~-ll--P~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP-----~r~eiL~glL--~aDlIgFqt~~~~~ 210 (474)
T PF00982_consen 141 PGDLVWVHDYHLM-LL--PQMLRERGPDARIGFFLHIPFPSSEIFRCLP-----WREEILRGLL--GADLIGFQTFEYAR 210 (474)
T ss_dssp TT-EEEEESGGGT-TH--HHHHHHTT--SEEEEEE-S----HHHHTTST-----THHHHHHHHT--TSSEEEESSHHHHH
T ss_pred CCCEEEEeCCcHH-HH--HHHHHhhcCCceEeeEEecCCCCHHHHhhCC-----cHHHHHHHhh--cCCEEEEecHHHHH
Confidence 4589999987655 33 334544443 57778888887544321111 1111222222 36888888755555
Q ss_pred -c-------C------CC-------ccccc----cccCCCCcCcchhh------hHHhhcCCCCCccEEEEEeeccccCC
Q 008544 239 -Y-------P------NS-------IVCNV----HGVNPKFLEIGEKK------MEQQQNGNKAFTKGAYYIGRMVWSKG 287 (562)
Q Consensus 239 -~-------~------~~-------~~~~v----~GVd~~~~~~~~~~------~~~~~~~~~~~~~~il~vGr~~~~Kg 287 (562)
+ . .. ..+.+ .|||++.+...... ..........+.++|+-+.|++.-||
T Consensus 211 nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~~ii~gvDrld~~kG 290 (474)
T PF00982_consen 211 NFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKRKIIVGVDRLDYTKG 290 (474)
T ss_dssp HHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-SEEEEEE--B-GGG-
T ss_pred HHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCcEEEEEeccchhhcC
Confidence 1 0 10 01111 27777655321110 00111112222488999999999999
Q ss_pred HHHHHHHHHHHHHhcCC----cEEEEEeCCC--C-------HHHHHHHHHhcCC--------eeEEeCCC---CChHHHH
Q 008544 288 YEELLGLLNIYHKELAG----LEMDLYGNGE--D-------FDQIQRAAKKLKL--------VVRVYPGR---DHADPIF 343 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~----~~l~ivG~g~--~-------~~~l~~~~~~l~l--------~~~~~~~~---~~~~~l~ 343 (562)
+..=+.|++++.+++|+ +.|+-++... + .+++++++.+.+. .+.++... ++.-.+|
T Consensus 291 i~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly 370 (474)
T PF00982_consen 291 IPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALY 370 (474)
T ss_dssp HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHH
Confidence 99999999999998876 5666666521 1 1344444443321 14554432 2333899
Q ss_pred hhcCEEEEccCCCCCcHHHHHHHHcCCc----EEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC-CccH
Q 008544 344 HDYKVFLNPSTTDVVCTATAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA-QPTD 415 (562)
Q Consensus 344 ~~adv~v~pS~~E~~~~~~lEAma~G~P----VI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~-~l~~ 415 (562)
+.||+++.+|..||+.++..|+.+|... +|.|...| .+.+.+ .+++++ |.+++|++|.++++.+.. +..+
T Consensus 371 ~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai~~AL~M~~~Er~~r 448 (474)
T PF00982_consen 371 RAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAIHEALTMPPEERKER 448 (474)
T ss_dssp HH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHHHHHHT--HHHHHHH
T ss_pred HhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999875 67776665 666633 335654 999999999999997765 2222
Q ss_pred HHH-----hcCCHHHHHHHHHHHH
Q 008544 416 AQT-----HQLSWESATERFLQVA 434 (562)
Q Consensus 416 ~ar-----~~~sw~~~~~~~~~~y 434 (562)
..+ ..++-..-++.+++..
T Consensus 449 ~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 449 HARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHhHhCCHHHHHHHHHHHh
Confidence 111 5666666666666543
No 110
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.68 E-value=6.8e-07 Score=94.17 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=117.7
Q ss_pred CccEEEEEeeccccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCC-----C----HHHHHHHHHhcCCe--------e
Q 008544 272 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGE-----D----FDQIQRAAKKLKLV--------V 330 (562)
Q Consensus 272 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~-----~----~~~l~~~~~~l~l~--------~ 330 (562)
+.++|+-+.|+++-||+..=++|++.+.+++|+ +.|+-+.... + +.++++++.+.|.. +
T Consensus 254 ~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv 333 (474)
T PRK10117 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPL 333 (474)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeE
Confidence 367888999999999999999999999998886 5566565421 1 23444444443321 4
Q ss_pred EEeCC-C--CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC-----cEEeeCCCC-ccccccCCceEeeC--CHHHHH
Q 008544 331 RVYPG-R--DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 399 (562)
Q Consensus 331 ~~~~~-~--~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-----PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la 399 (562)
+++.. . ++...+|+.||+++.+|..||+.++..|+.||-. ..|.|...| .+.+. ..++++ |.++++
T Consensus 334 ~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L~---~AllVNP~d~~~~A 410 (474)
T PRK10117 334 YYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVA 410 (474)
T ss_pred EEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchHHHhC---CCeEECCCCHHHHH
Confidence 44322 2 2333899999999999999999999999999965 377777765 66662 356665 999999
Q ss_pred HHHHHHHhCCCC----CccHHHH--hcCCHHHHHHHHHHHHHhcC
Q 008544 400 EATLKALAEEPA----QPTDAQT--HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 400 ~~i~~ll~~~~~----~l~~~ar--~~~sw~~~~~~~~~~y~~~~ 438 (562)
++|.++++.+.. ++..-.. ..++-..-++.+++..+...
T Consensus 411 ~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 411 AALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 999999998875 2221111 66777777888887766554
No 111
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.1e-06 Score=88.60 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=159.2
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEE
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 231 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 231 (562)
.+.+.|.....||.+--+..+...- ...++.+-.|+..++-.. +. ..+... + -.+-+|..+.
T Consensus 326 e~a~~I~~d~IdILvDl~g~T~d~r--~~v~A~RpAPiqvswlGy-~a---T~g~p~--------~----DY~I~D~y~v 387 (620)
T COG3914 326 EIANAIRTDGIDILVDLDGHTVDTR--CQVFAHRPAPIQVSWLGY-PA---TTGSPN--------M----DYFISDPYTV 387 (620)
T ss_pred HHHHHHHhcCCeEEEeccCceeccc--hhhhhcCCCceEEeeccc-cc---ccCCCc--------c----eEEeeCceec
Confidence 3566778888998876554333222 233555545776665422 11 101000 0 0001344433
Q ss_pred cChhhhccCCCcccccc-ccCC-CCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE
Q 008544 232 LSAATQEYPNSIVCNVH-GVNP-KFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL 309 (562)
Q Consensus 232 ~S~~~~~~~~~~~~~v~-GVd~-~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i 309 (562)
. +..+++..+++..+. ...+ +.+.+......+...|++++..+ |+.--...|-..++++.+.++.+..|+..|++
T Consensus 388 P-p~ae~yysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avV--f~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L 464 (620)
T COG3914 388 P-PTAEEYYSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVV--FCCFNNYFKITPEVFALWMQILSAVPNSVLLL 464 (620)
T ss_pred C-chHHHHHHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEE--EEecCCcccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 3 444444443332222 1111 22333333344667888886654 33333578888999999999999999999999
Q ss_pred EeCCCC---HHHHHHHHHhcCCe---eEEeCCCCChH--HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC--
Q 008544 310 YGNGED---FDQIQRAAKKLKLV---VRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-- 379 (562)
Q Consensus 310 vG~g~~---~~~l~~~~~~l~l~---~~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-- 379 (562)
.|.|++ ...+++.+++.|+. .+|.+...+.. +-|..+|+++-+--+ +-.++.+||+.||+|||+--...
T Consensus 465 ~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~Fa 543 (620)
T COG3914 465 KAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFA 543 (620)
T ss_pred ecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHH
Confidence 999876 37889999999986 44544433333 788899999977555 44789999999999999874321
Q ss_pred ----ccccc-cCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH------hcCCHHHHHHHHHHHHHhcC
Q 008544 380 ----NDFFK-QFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT------HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 380 ----~e~v~-~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar------~~~sw~~~~~~~~~~y~~~~ 438 (562)
..++. -|..-+++++.++.++.-..+-.|... +.+.+-+ --|+-+..++++.+.|....
T Consensus 544 sR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~ 615 (620)
T COG3914 544 SRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMW 615 (620)
T ss_pred HhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHH
Confidence 22222 233344567788877776666666533 2222211 25777888888888887543
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=1.9e-05 Score=79.96 Aligned_cols=345 Identities=13% Similarity=0.072 Sum_probs=185.9
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
++||++|...- |. ++-..-+..++.+.++.+..|+.+.. - | +++ ....+++.--...
T Consensus 3 ~~Kv~~I~GTR-PE----~iKmapli~~~~~~~~~~~~vi~TGQ-----H--~-------d~e----m~~~~le~~~i~~ 59 (383)
T COG0381 3 MLKVLTIFGTR-PE----AIKMAPLVKALEKDPDFELIVIHTGQ-----H--R-------DYE----MLDQVLELFGIRK 59 (383)
T ss_pred ceEEEEEEecC-HH----HHHHhHHHHHHHhCCCCceEEEEecc-----c--c-------cHH----HHHHHHHHhCCCC
Confidence 47899988765 32 33455567889888767777776621 0 0 001 1111211111111
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchH
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~ 208 (562)
|++.+..-..+....-.....+..+.+++.+.+||+|.+|+.....+- ++.++...+..|+.+-.....+..+
T Consensus 60 pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA--~alaa~~~~IpV~HvEAGlRt~~~~----- 132 (383)
T COG0381 60 PDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLA--GALAAFYLKIPVGHVEAGLRTGDLY----- 132 (383)
T ss_pred CCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHH--HHHHHHHhCCceEEEecccccCCCC-----
Confidence 333333221111111122223556788889999999999998777444 3445555443333332221111111
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcChhhhcc------CCCccccc-c-ccCC-CCc--CcchhhhHHhh-cCCCCCccEE
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLSAATQEY------PNSIVCNV-H-GVNP-KFL--EIGEKKMEQQQ-NGNKAFTKGA 276 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~------~~~~~~~v-~-GVd~-~~~--~~~~~~~~~~~-~~~~~~~~~i 276 (562)
+-.-+++.+....+|.-++.++..++. +++.+.++ + -+|. ... ........... ...+..+.++
T Consensus 133 ----~PEE~NR~l~~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~~~iL 208 (383)
T COG0381 133 ----FPEEINRRLTSHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDKKYIL 208 (383)
T ss_pred ----CcHHHHHHHHHHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccCcEEE
Confidence 111122222232377788888777772 33323222 1 1121 000 00001111111 2222222333
Q ss_pred EEEeecc-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHH-HhcCCe--eEEeCC--CCChHHHHhhcCEEE
Q 008544 277 YYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAA-KKLKLV--VRVYPG--RDHADPIFHDYKVFL 350 (562)
Q Consensus 277 l~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~-~~l~l~--~~~~~~--~~~~~~l~~~adv~v 350 (562)
+..=|-. ..+++..+++++.++..+++++.++.--. +. ..+++.. ..++.. +..+.+ +.+...++..|-+.+
T Consensus 209 vT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H-~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~il 286 (383)
T COG0381 209 VTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVH-PR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLIL 286 (383)
T ss_pred EEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCC-CC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEE
Confidence 3443433 34899999999999999888877666543 32 4444444 455544 555655 444447777776555
Q ss_pred EccCCCCCcHHHHHHHHcCCcEEeeCCCC--ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHH
Q 008544 351 NPSTTDVVCTATAEALAMGKIVVCANHPS--NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQTHQLSWESA 426 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma~G~PVI~t~~~~--~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~ 426 (562)
--| |.-.=||-..|+||++-+... +|-++.|.+-++-.|.+.+.+++..++++++. +|+... ..|.=..+
T Consensus 287 tDS-----GgiqEEAp~lg~Pvl~lR~~TERPE~v~agt~~lvg~~~~~i~~~~~~ll~~~~~~~~m~~~~-npYgdg~a 360 (383)
T COG0381 287 TDS-----GGIQEEAPSLGKPVLVLRDTTERPEGVEAGTNILVGTDEENILDAATELLEDEEFYERMSNAK-NPYGDGNA 360 (383)
T ss_pred ecC-----CchhhhHHhcCCcEEeeccCCCCccceecCceEEeCccHHHHHHHHHHHhhChHHHHHHhccc-CCCcCcch
Confidence 444 567889999999999997764 88776655555555899999999999998775 454322 33333445
Q ss_pred HHHHHHHHH
Q 008544 427 TERFLQVAE 435 (562)
Q Consensus 427 ~~~~~~~y~ 435 (562)
.+++.++..
T Consensus 361 s~rIv~~l~ 369 (383)
T COG0381 361 SERIVEILL 369 (383)
T ss_pred HHHHHHHHH
Confidence 555555443
No 113
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.49 E-value=6.1e-05 Score=79.32 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=75.8
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEE-EEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEc
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM-DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNP 352 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~p 352 (562)
.+++..|.+...+. . +++.+.....+. ++++ +..|.+.+.+.++. ...++.+.+. .+..+++..+|++|..
T Consensus 227 ~v~vs~Gs~~~~~~-~-~~~~~~~al~~~-~~~~i~~~g~~~~~~~~~~----~~~~v~~~~~-~p~~~ll~~~~~~I~h 298 (392)
T TIGR01426 227 VVLISLGTVFNNQP-S-FYRTCVEAFRDL-DWHVVLSVGRGVDPADLGE----LPPNVEVRQW-VPQLEILKKADAFITH 298 (392)
T ss_pred EEEEecCccCCCCH-H-HHHHHHHHHhcC-CCeEEEEECCCCChhHhcc----CCCCeEEeCC-CCHHHHHhhCCEEEEC
Confidence 45566777543322 2 333332222333 3444 45566544433322 2333444433 3456899999999965
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCC
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 410 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~ 410 (562)
+ | ..+++|||++|+|+|+....+ .+.+.+...|...+ ++++++++|.++++|+.
T Consensus 299 g---G-~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~ 361 (392)
T TIGR01426 299 G---G-MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361 (392)
T ss_pred C---C-chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 4 2 357999999999999986553 33444545565542 67899999999998864
No 114
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.41 E-value=4.3e-06 Score=86.14 Aligned_cols=241 Identities=15% Similarity=0.076 Sum_probs=142.9
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCC--EEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRF--VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~--vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 227 (562)
..++.+.+.+.+||++++-+...+++- .+..+.+...+ +++++--. . |.- +.++ .+.+.+. +|
T Consensus 71 ~~~~~~~~~~~~pd~vIlID~pgFNlr-lak~lk~~~~~~~viyYI~Pq-v-WAW--r~~R---------~~~i~~~-~D 135 (373)
T PF02684_consen 71 FRKLVERIKEEKPDVVILIDYPGFNLR-LAKKLKKRGIPIKVIYYISPQ-V-WAW--RPGR---------AKKIKKY-VD 135 (373)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHHhCCCceEEEEECCc-e-eee--CccH---------HHHHHHH-Hh
Confidence 345777788999999988877666554 22333333223 55555311 1 110 0111 2223333 79
Q ss_pred EEEEcChhhhccCCCcccccc--ccCC-CCcCcch-hhhHHhhcCCCCCccE-EEEEee-ccc-cCCHHHHHHHHHHHHH
Q 008544 228 KVIRLSAATQEYPNSIVCNVH--GVNP-KFLEIGE-KKMEQQQNGNKAFTKG-AYYIGR-MVW-SKGYEELLGLLNIYHK 300 (562)
Q Consensus 228 ~vi~~S~~~~~~~~~~~~~v~--GVd~-~~~~~~~-~~~~~~~~~~~~~~~~-il~vGr-~~~-~Kg~~~ll~a~~~l~~ 300 (562)
.++|.=+...++.++...... |-.. +...+.. ....+... ++++.++ .++.|. -.. .+.+..+++++.++.+
T Consensus 136 ~ll~ifPFE~~~y~~~g~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~ 214 (373)
T PF02684_consen 136 HLLVIFPFEPEFYKKHGVPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKK 214 (373)
T ss_pred heeECCcccHHHHhccCCCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999888887665433332 3221 2222211 12222333 5555554 455563 222 4567899999999999
Q ss_pred hcCCcEEEEEeCCCCH-HHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 301 ELAGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~-~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
+.|++++++....... +.+++.....+....+.....+..++++.||+.+..| |++.+|++.+|+|.|+.-..+
T Consensus 215 ~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk~~ 289 (373)
T PF02684_consen 215 QRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYKVS 289 (373)
T ss_pred hCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEcCc
Confidence 9999999988764443 3355665555554555444556778999999999888 999999999999977764322
Q ss_pred -------ccccccCCceEe--------e------C-CHHHHHHHHHHHHhCCCC
Q 008544 380 -------NDFFKQFPNCRT--------Y------D-GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 380 -------~e~v~~~~~g~~--------~------~-d~~~la~~i~~ll~~~~~ 411 (562)
.-++.-.--++. + + +++.+++++..+++|++.
T Consensus 290 ~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~ 343 (373)
T PF02684_consen 290 PLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEK 343 (373)
T ss_pred HHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHH
Confidence 112211111111 1 1 778888888888876643
No 115
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=3.4e-05 Score=81.22 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=154.9
Q ss_pred cEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhcc-
Q 008544 163 DIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY- 239 (562)
Q Consensus 163 DvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~- 239 (562)
|+|.+|....+ .+ ..++..+.. ++.+..|..++.-.-..-. + ..+.+..-+. .||.|-..++..++-
T Consensus 149 DiIWVhDYhL~-L~--P~mlR~~~~~~~IgfFlHiPfPssEvfr~l-P----~r~eIl~gll--~~dligFqt~~y~~nF 218 (486)
T COG0380 149 DIIWVHDYHLL-LV--PQMLRERIPDAKIGFFLHIPFPSSEVFRCL-P----WREEILEGLL--GADLIGFQTESYARNF 218 (486)
T ss_pred CEEEEEechhh-hh--HHHHHHhCCCceEEEEEeCCCCCHHHHhhC-c----hHHHHHHHhh--cCCeeEecCHHHHHHH
Confidence 99999987655 33 233444433 5677778776642211000 0 1112222222 357777776555551
Q ss_pred -------CC-------------Cccccc----cccCCCCcCcchhhh------HHhhcCCCCCccEEEEEeeccccCCHH
Q 008544 240 -------PN-------------SIVCNV----HGVNPKFLEIGEKKM------EQQQNGNKAFTKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 240 -------~~-------------~~~~~v----~GVd~~~~~~~~~~~------~~~~~~~~~~~~~il~vGr~~~~Kg~~ 289 (562)
.. ...+.+ .|||+..|....... .........+.++|+.+-|++.-||+.
T Consensus 219 ~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~ 298 (486)
T COG0380 219 LDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIP 298 (486)
T ss_pred HHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcH
Confidence 10 111111 278886654222111 111112223378899999999999999
Q ss_pred HHHHHHHHHHHhcCC----cEEEEEeCCCC---H------HHHHHHHHhcCC--------eeEEeCC---CCChHHHHhh
Q 008544 290 ELLGLLNIYHKELAG----LEMDLYGNGED---F------DQIQRAAKKLKL--------VVRVYPG---RDHADPIFHD 345 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~----~~l~ivG~g~~---~------~~l~~~~~~l~l--------~~~~~~~---~~~~~~l~~~ 345 (562)
.=+.|++++..++|+ +.++-++.... . .+++..+.+.+- .+.++.. +++...+|..
T Consensus 299 ~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~ 378 (486)
T COG0380 299 QRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRA 378 (486)
T ss_pred HHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhh
Confidence 999999999988885 55666665322 1 223333333221 1334332 3344488889
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCC----cEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCCC----cc
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGK----IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQ----PT 414 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~----PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~~----l~ 414 (562)
+|+++.+|..||+.++..|+.||-- +.|-|+..| ...+. ..++++ |.++++++|.++|+.+.++ +.
T Consensus 379 aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L~---~AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~ 455 (486)
T COG0380 379 ADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELR---DALIVNPWDTKEVADAIKRALTMSLEERKERHE 455 (486)
T ss_pred hceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhhc---cCEeECCCChHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999854 677776655 55553 356665 9999999999999977651 11
Q ss_pred HHHH--hcCCHHHHHHHHHHHHHh
Q 008544 415 DAQT--HQLSWESATERFLQVAEL 436 (562)
Q Consensus 415 ~~ar--~~~sw~~~~~~~~~~y~~ 436 (562)
.--. ...+-..-++.+++....
T Consensus 456 ~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 456 KLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 1111 555666666666655443
No 116
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.38 E-value=2e-06 Score=77.39 Aligned_cols=139 Identities=18% Similarity=0.176 Sum_probs=70.4
Q ss_pred ccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCcccccccccchhc
Q 008544 64 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 143 (562)
Q Consensus 64 ~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~ 143 (562)
||.+.++..+++.|.++| |+|+++++.......... .+++.+.. ... ...+. .
T Consensus 1 GG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~~~~~~-~~~~~~~~---------------~~~------~~~~~----~ 53 (160)
T PF13579_consen 1 GGIERYVRELARALAARG-HEVTVVTPQPDPEDDEEE-EDGVRVHR---------------LPL------PRRPW----P 53 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEE---GGG-SEE-ETTEEEEE---------------E--------S-SSS----G
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEEEecCCCCcccccc-cCCceEEe---------------ccC------Cccch----h
Confidence 688899999999999998 999999984322111000 01111110 000 00000 0
Q ss_pred cchhhhHHhHHhhc--CcCCCcEEEecCCchhhhhhchHHHHh-hcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHH
Q 008544 144 KKSILAVGDITEII--PDEEADIAVLEEPEHLTWFHHGKRWKA-KFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNS 219 (562)
Q Consensus 144 ~~~~~~~~~l~~~i--~~~~pDvV~~~~~~~~~~~~~~~~~~~-~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (562)
.........+.+++ .+.+||+||++++. ..+. ..+.+ ..+ |+|.++|+...... ..+...+.+.+.+
T Consensus 54 ~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~---~~~~~~~~~~p~v~~~h~~~~~~~-----~~~~~~~~~~~~~ 124 (160)
T PF13579_consen 54 LRLLRFLRRLRRLLAARRERPDVVHAHSPT-AGLV---AALARRRRGIPLVVTVHGTLFRRG-----SRWKRRLYRWLER 124 (160)
T ss_dssp GGHCCHHHHHHHHCHHCT---SEEEEEHHH-HHHH---HHHHHHHHT--EEEE-SS-T-----------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhccCCeEEEecccc-hhHH---HHHHHHccCCcEEEEECCCchhhc-----cchhhHHHHHHHH
Confidence 01111234577778 88999999999954 3233 22333 334 99999997532211 2223334445555
Q ss_pred HHHHHhccEEEEcChhhhcc
Q 008544 220 WLARVHCHKVIRLSAATQEY 239 (562)
Q Consensus 220 ~~~~~~ad~vi~~S~~~~~~ 239 (562)
++.+. ||.++++|+..++.
T Consensus 125 ~~~~~-ad~vi~~S~~~~~~ 143 (160)
T PF13579_consen 125 RLLRR-ADRVIVVSEAMRRY 143 (160)
T ss_dssp HHHHH--SEEEESSHHHHHH
T ss_pred HHHhc-CCEEEECCHHHHHH
Confidence 55554 89999999999884
No 117
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.31 E-value=7e-06 Score=72.77 Aligned_cols=137 Identities=21% Similarity=0.205 Sum_probs=77.5
Q ss_pred eEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCC
Q 008544 51 HIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTST 130 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (562)
||+++++.. +.....++++|.++| |||+++++.... ......+++.+... .
T Consensus 1 KIl~i~~~~-------~~~~~~~~~~L~~~g-~~V~ii~~~~~~--~~~~~~~~i~~~~~---------------~---- 51 (139)
T PF13477_consen 1 KILLIGNTP-------STFIYNLAKELKKRG-YDVHIITPRNDY--EKYEIIEGIKVIRL---------------P---- 51 (139)
T ss_pred CEEEEecCc-------HHHHHHHHHHHHHCC-CEEEEEEcCCCc--hhhhHhCCeEEEEe---------------c----
Confidence 688888865 235788999999998 999999982211 00000111111110 0
Q ss_pred cccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchH
Q 008544 131 FDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 131 ~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~ 208 (562)
. +.+. ....+ .+..+.+++++.+|||||+|.+...+.+ +..+++..+ |++.+.|+... +... ..
T Consensus 52 --~---~~k~--~~~~~-~~~~l~k~ik~~~~DvIh~h~~~~~~~~--~~l~~~~~~~~~~i~~~hg~~~-~~~~-~~-- 117 (139)
T PF13477_consen 52 --S---PRKS--PLNYI-KYFRLRKIIKKEKPDVIHCHTPSPYGLF--AMLAKKLLKNKKVIYTVHGSDF-YNSS-KK-- 117 (139)
T ss_pred --C---CCCc--cHHHH-HHHHHHHHhccCCCCEEEEecCChHHHH--HHHHHHHcCCCCEEEEecCCee-ecCC-ch--
Confidence 0 0000 11111 2346889999999999999998775454 333333333 89999996422 1111 11
Q ss_pred HHHHHHHHHHHHHHHHhccEEEEcC
Q 008544 209 LQAFLLEFVNSWLARVHCHKVIRLS 233 (562)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ad~vi~~S 233 (562)
..+.+.+.+++.+. +|.+++.|
T Consensus 118 --~~~~~~~~~~~~k~-~~~ii~~~ 139 (139)
T PF13477_consen 118 --KKLKKFIIKFAFKR-ADKIIVQS 139 (139)
T ss_pred --HHHHHHHHHHHHHh-CCEEEEcC
Confidence 11344455555554 89999876
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.31 E-value=7.8e-06 Score=85.90 Aligned_cols=169 Identities=12% Similarity=-0.011 Sum_probs=107.0
Q ss_pred HhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCCCh
Q 008544 264 QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRDHA 339 (562)
Q Consensus 264 ~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~~~ 339 (562)
+...+++++..+ |..--...|=-+..++++.++.+..|+.+|++...+.. .+.+++.+.+.|+. +.| .+....
T Consensus 276 R~~~gLp~d~vv--F~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f-~~~~~~ 352 (468)
T PF13844_consen 276 RAQYGLPEDAVV--FGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIF-SPVAPR 352 (468)
T ss_dssp TGGGT--SSSEE--EEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEE-EE---H
T ss_pred HHHcCCCCCceE--EEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEE-cCCCCH
Confidence 445788876644 43333467888999999999999999999999876544 57788888888886 333 333333
Q ss_pred H---HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC------ccccc-cCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 340 D---PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFFK-QFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 340 ~---~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~------~e~v~-~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
+ ..++.+|+++-|-.+ +-+++.+||+++|+|||+-.... ..++. -|-.-++..|.+++.+.-.++.+|+
T Consensus 353 ~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 353 EEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDP 431 (468)
T ss_dssp HHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-H
T ss_pred HHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCH
Confidence 3 566789999988544 44899999999999999986532 12221 2334456789999999999999988
Q ss_pred CC--CccHHHH------hcCCHHHHHHHHHHHHHh
Q 008544 410 PA--QPTDAQT------HQLSWESATERFLQVAEL 436 (562)
Q Consensus 410 ~~--~l~~~ar------~~~sw~~~~~~~~~~y~~ 436 (562)
+. .++++-+ .-|+-...++.++++|+.
T Consensus 432 ~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~ 466 (468)
T PF13844_consen 432 ERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQ 466 (468)
T ss_dssp HHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Confidence 86 4444433 457888888888888875
No 119
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.30 E-value=0.00013 Score=74.65 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=70.3
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC-CChHHHHhhcCEEEEc
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVFLNP 352 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~-~~~~~l~~~adv~v~p 352 (562)
.+++|.|. .+...+++++ .+.+++.+++.+. +... ..+..++.+.+.. ++..++|..||++|.-
T Consensus 190 ~iLv~~g~----~~~~~l~~~l----~~~~~~~~i~~~~-~~~~------~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~ 254 (321)
T TIGR00661 190 YILVYIGF----EYRYKILELL----GKIANVKFVCYSY-EVAK------NSYNENVEIRRITTDNFKELIKNAELVITH 254 (321)
T ss_pred cEEEECCc----CCHHHHHHHH----HhCCCeEEEEeCC-CCCc------cccCCCEEEEECChHHHHHHHHhCCEEEEC
Confidence 34555443 3556666665 3345665544332 2111 1122345555443 4678999999999976
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC-cc------ccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~-~e------~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
+ | ..++.||+++|+|+|....++ .| .+.+...|...+ +. ++.+++.+.++++.
T Consensus 255 ~---G-~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 255 G---G-FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMKR 316 (321)
T ss_pred C---C-hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccccc
Confidence 5 2 346999999999999987754 23 345555565553 44 66666666666654
No 120
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.30 E-value=2.5e-05 Score=89.05 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=112.2
Q ss_pred CccEEEEEeeccccCCHHHHHHHHHHHHHhcCCc----EEEEEeC-----CCCH----HHHHHHHHhcCC--------ee
Q 008544 272 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGL----EMDLYGN-----GEDF----DQIQRAAKKLKL--------VV 330 (562)
Q Consensus 272 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~----~l~ivG~-----g~~~----~~l~~~~~~l~l--------~~ 330 (562)
+.++|+-+.|++.-||+..=+.|++++.+++|++ .|+-+.. +++. .++.+.+.+.+. .+
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv 417 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPI 417 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 4678999999999999999999999999999874 5555544 2222 333444443321 14
Q ss_pred EEeCC---CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC-------------------cEEeeCCCC-ccccccCC
Q 008544 331 RVYPG---RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-------------------IVVCANHPS-NDFFKQFP 387 (562)
Q Consensus 331 ~~~~~---~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-------------------PVI~t~~~~-~e~v~~~~ 387 (562)
.++.. +.+.-.+|+.||+++.++..||+.++..|+.+|.. .+|.|...| ...+ .
T Consensus 418 ~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L---~ 494 (854)
T PLN02205 418 VLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL---S 494 (854)
T ss_pred EEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---C
Confidence 44333 22333889999999999999999999999999864 256665544 4444 2
Q ss_pred ceEeeC--CHHHHHHHHHHHHhCCCC----CccHHHH--hcCCHHHHHHHHHHHHHhc
Q 008544 388 NCRTYD--GRNGFVEATLKALAEEPA----QPTDAQT--HQLSWESATERFLQVAELV 437 (562)
Q Consensus 388 ~g~~~~--d~~~la~~i~~ll~~~~~----~l~~~ar--~~~sw~~~~~~~~~~y~~~ 437 (562)
..+.++ |.++++++|.++++.+.. ++.+..+ ..++-..-++.+++..+.+
T Consensus 495 ~Ai~VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 495 GAIRVNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 355564 999999999999998875 2222222 5566666666666655443
No 121
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.28 E-value=0.00026 Score=76.76 Aligned_cols=126 Identities=16% Similarity=0.063 Sum_probs=76.6
Q ss_pred ccEEEEEeecccc-CCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEE
Q 008544 273 TKGAYYIGRMVWS-KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVF 349 (562)
Q Consensus 273 ~~~il~vGr~~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~ 349 (562)
..+++..|..... +....+++.+.+..++.| .++++...++..+ ..+.-++. ..+.-+..++++ .+++|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~-~~viw~~~~~~~~------~~~p~Nv~-i~~w~Pq~~lL~hp~v~~f 368 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP-YNVLWKYDGEVEA------INLPANVL-TQKWFPQRAVLKHKNVKAF 368 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC-CeEEEEECCCcCc------ccCCCceE-EecCCCHHHHhcCCCCCEE
Confidence 3555667776432 222333433333334444 4666665543221 12222333 344456678884 58888
Q ss_pred EEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCC
Q 008544 350 LNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 410 (562)
Q Consensus 350 v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~ 410 (562)
|.- |-..++.||+.+|+|+|+-...+ ...+.+.+.|...+ +.+++.++|.++++|+.
T Consensus 369 ItH----GG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 369 VTQ----GGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred Eec----CCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 843 45678999999999999987653 44444555565542 78999999999998754
No 122
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.27 E-value=0.00017 Score=73.36 Aligned_cols=217 Identities=13% Similarity=0.040 Sum_probs=122.4
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+++++++||++++.+.... .+.+..++ |.|....+...... ++...- .||.
T Consensus 72 ~~~l~~~~~~~~pDv~is~~s~~a------~~va~~lgiP~I~f~D~e~a~~~----------------~~Lt~P-la~~ 128 (335)
T PF04007_consen 72 QYKLLKLIKKFKPDVAISFGSPEA------ARVAFGLGIPSIVFNDTEHAIAQ----------------NRLTLP-LADV 128 (335)
T ss_pred HHHHHHHHHhhCCCEEEecCcHHH------HHHHHHhCCCeEEEecCchhhcc----------------ceeehh-cCCe
Confidence 445777888899999998766444 22444445 77766654322111 111111 3799
Q ss_pred EEEcChhh----hccCCC-ccccccccCC----CCcCcchhhhHHhhcCCCCCccEEEEEeeccccC-----CH-HHHHH
Q 008544 229 VIRLSAAT----QEYPNS-IVCNVHGVNP----KFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSK-----GY-EELLG 293 (562)
Q Consensus 229 vi~~S~~~----~~~~~~-~~~~v~GVd~----~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~K-----g~-~~ll~ 293 (562)
+++++-.- +++-.+ .+...+|++. ..|.|+.. .....|..+ .++|+. |..+.+ |- ..+-+
T Consensus 129 i~~P~~~~~~~~~~~G~~~~i~~y~G~~E~ayl~~F~Pd~~--vl~~lg~~~-~~yIvv--R~~~~~A~y~~~~~~i~~~ 203 (335)
T PF04007_consen 129 IITPEAIPKEFLKRFGAKNQIRTYNGYKELAYLHPFKPDPE--VLKELGLDD-EPYIVV--RPEAWKASYDNGKKSILPE 203 (335)
T ss_pred eECCcccCHHHHHhcCCcCCEEEECCeeeEEeecCCCCChh--HHHHcCCCC-CCEEEE--EeccccCeeecCccchHHH
Confidence 98887433 233222 2333556654 33554433 344566554 444442 333322 21 23445
Q ss_pred HHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEE
Q 008544 294 LLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVV 373 (562)
Q Consensus 294 a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI 373 (562)
.++.+.+.. +. ++++...++..++ .++.+ +.+.....+..+++..||++|--+ |+...||...|+|.|
T Consensus 204 ii~~L~~~~-~~-vV~ipr~~~~~~~---~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig~g-----gTMa~EAA~LGtPaI 271 (335)
T PF04007_consen 204 IIEELEKYG-RN-VVIIPRYEDQREL---FEKYG--VIIPPEPVDGLDLLYYADLVIGGG-----GTMAREAALLGTPAI 271 (335)
T ss_pred HHHHHHhhC-ce-EEEecCCcchhhH---HhccC--ccccCCCCCHHHHHHhcCEEEeCC-----cHHHHHHHHhCCCEE
Confidence 555555543 33 5666554333222 23333 344445556668999999999543 788999999999999
Q ss_pred eeCCC---C-ccccccCCceEe--eCCHHHHHHHHHHHHhC
Q 008544 374 CANHP---S-NDFFKQFPNCRT--YDGRNGFVEATLKALAE 408 (562)
Q Consensus 374 ~t~~~---~-~e~v~~~~~g~~--~~d~~~la~~i~~ll~~ 408 (562)
.+..+ + .+++.+. |++ ..|++++.+.+.+.+..
T Consensus 272 s~~~g~~~~vd~~L~~~--Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 272 SCFPGKLLAVDKYLIEK--GLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred EecCCcchhHHHHHHHC--CCeEecCCHHHHHHHHHHhhhc
Confidence 98543 2 3444433 455 46999999877765543
No 123
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=0.00012 Score=70.57 Aligned_cols=246 Identities=15% Similarity=0.086 Sum_probs=130.5
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||+|+|+.++....|--.+++.+|+.|.++| ..++.++... -+. ++ .+ .| . .
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~-~~~~fl~k~~----~e~-~~------~~--------~~--~--~--- 53 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRG-FACLFLTKQD----IEA-II------HK--------VY--E--G--- 53 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcC-ceEEEecccc----hhh-hh------hh--------hh--h--h---
Confidence 68999999997777787888999999999998 8888886611 000 00 00 11 0 0
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHH
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
+....+. ....|+++++|+++..+.....-. ...++......+..+.+.......
T Consensus 54 -f~~~~~~---------------~~n~ik~~k~d~lI~Dsygl~~dd--~k~ik~e~~~k~l~fDd~~~~~~~------- 108 (318)
T COG3980 54 -FKVLEGR---------------GNNLIKEEKFDLLIFDSYGLNADD--FKLIKEEAGSKILIFDDENAKSFK------- 108 (318)
T ss_pred -ccceeee---------------cccccccccCCEEEEeccCCCHHH--HHHHHHHhCCcEEEecCCCccchh-------
Confidence 1111111 223678899999988765443222 233443334344344322111110
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHH
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~ 289 (562)
.....++...... |+-..+ +. .....-|.+.-.+.+.-. ..+......+-..+++..|.-+ .||
T Consensus 109 --d~d~ivN~~~~a~--~~y~~v-------~~-k~~~~lGp~y~~lr~eF~-~~r~~~~~r~~r~ilI~lGGsD-pk~-- 172 (318)
T COG3980 109 --DNDLIVNAILNAN--DYYGLV-------PN-KTRYYLGPGYAPLRPEFY-ALREENTERPKRDILITLGGSD-PKN-- 172 (318)
T ss_pred --hhHhhhhhhhcch--hhcccc-------Cc-ceEEEecCCceeccHHHH-HhHHHHhhcchheEEEEccCCC-hhh--
Confidence 0111111111111 111111 11 111112433322221110 0111111112233566667543 334
Q ss_pred HHHHHHHHHHHhcCCcEEEE-EeCC-CCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDL-YGNG-EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~i-vG~g-~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 367 (562)
..++.++.+.+.. +.+.+ +|++ +....+++.++... +++++-..+++.++|.+||+.+... |.++.||+.
T Consensus 173 lt~kvl~~L~~~~--~nl~iV~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~Aa-----GstlyEa~~ 244 (318)
T COG3980 173 LTLKVLAELEQKN--VNLHIVVGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAISAA-----GSTLYEALL 244 (318)
T ss_pred hHHHHHHHhhccC--eeEEEEecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchheecc-----chHHHHHHH
Confidence 3455666665553 44444 3544 34677888877665 5778888899999999999988653 889999999
Q ss_pred cCCc
Q 008544 368 MGKI 371 (562)
Q Consensus 368 ~G~P 371 (562)
.|+|
T Consensus 245 lgvP 248 (318)
T COG3980 245 LGVP 248 (318)
T ss_pred hcCC
Confidence 9999
No 124
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.13 E-value=1.8e-05 Score=81.57 Aligned_cols=242 Identities=13% Similarity=0.093 Sum_probs=134.0
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKV 229 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v 229 (562)
+..+.+.+.+.+||+|++++.....+. ++..+...+--|..++.-...+...++. .-...+..+.+. +|..
T Consensus 56 ~~~~~~~~~~~~Pd~Vlv~GD~~~~la--~alaA~~~~ipv~HieaGlRs~d~~~g~------~de~~R~~i~~l-a~lh 126 (346)
T PF02350_consen 56 IIELADVLEREKPDAVLVLGDRNEALA--AALAAFYLNIPVAHIEAGLRSGDRTEGM------PDEINRHAIDKL-AHLH 126 (346)
T ss_dssp HHHHHHHHHHHT-SEEEEETTSHHHHH--HHHHHHHTT-EEEEES-----S-TTSST------THHHHHHHHHHH--SEE
T ss_pred HHHHHHHHHhcCCCEEEEEcCCchHHH--HHHHHHHhCCCEEEecCCCCccccCCCC------chhhhhhhhhhh-hhhh
Confidence 456778888999999999988766444 3445555553355666443322222111 222334444555 8999
Q ss_pred EEcChhhhcc------CCCccccc-c-ccCCCCcCc-chhhhH-HhhcCCCCCccEEEEEe-eccc---cCCHHHHHHHH
Q 008544 230 IRLSAATQEY------PNSIVCNV-H-GVNPKFLEI-GEKKME-QQQNGNKAFTKGAYYIG-RMVW---SKGYEELLGLL 295 (562)
Q Consensus 230 i~~S~~~~~~------~~~~~~~v-~-GVd~~~~~~-~~~~~~-~~~~~~~~~~~~il~vG-r~~~---~Kg~~~ll~a~ 295 (562)
++.++..++. +.+++..+ + ++|.-.... ...... ..........++++... +... ......+.+++
T Consensus 127 f~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l 206 (346)
T PF02350_consen 127 FAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEAL 206 (346)
T ss_dssp EESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHH
Confidence 9999887773 22333222 1 333311100 000000 00100012244444433 3222 34567888888
Q ss_pred HHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHH-HHHHcCC
Q 008544 296 NIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATA-EALAMGK 370 (562)
Q Consensus 296 ~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~l-EAma~G~ 370 (562)
..+.+. +++.+++.....+ ...+.+..+++. +++++.. +.+.-.+++.|+++|--| | .+. ||.++|+
T Consensus 207 ~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~ 278 (346)
T PF02350_consen 207 KALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGK 278 (346)
T ss_dssp HHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT-
T ss_pred HHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCC
Confidence 888877 7898888886333 456666666653 6776554 445558999999998665 5 566 9999999
Q ss_pred cEEeeCCCC--ccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 371 IVVCANHPS--NDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 371 PVI~t~~~~--~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
|||.-+..+ .+....+.+.++-.|.+++.++|.+++++
T Consensus 279 P~v~iR~~geRqe~r~~~~nvlv~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 279 PVVNIRDSGERQEGRERGSNVLVGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp -EEECSSS-S-HHHHHTTSEEEETSSHHHHHHHHHHHHH-
T ss_pred eEEEecCCCCCHHHHhhcceEEeCCCHHHHHHHHHHHHhC
Confidence 999995544 77777777777335999999999999986
No 125
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.08 E-value=7.7e-05 Score=68.94 Aligned_cols=163 Identities=19% Similarity=0.139 Sum_probs=92.5
Q ss_pred CeEEEEecccCCC-cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 50 QHIAIFTTASLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 50 ~rI~ivt~~~~P~-~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+||+|+.+-..|. .||.++...+|+..|.++| ++|+|.+...........| ++++ ....
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g-~~v~Vyc~~~~~~~~~~~y-~gv~------------------l~~i 61 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKG-IDVTVYCRSDYYPYKEFEY-NGVR------------------LVYI 61 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC-ceEEEEEccCCCCCCCccc-CCeE------------------EEEe
Confidence 6899999987765 7999999999999999998 9999998732111111001 1111 1000
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCc--CCCcEEEecCCchhhhhhchHHHHhhcC----CEEEEEcCCcHHHHh
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPD--EEADIAVLEEPEHLTWFHHGKRWKAKFR----FVVGIVHTNYLEYVK 202 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~--~~pDvV~~~~~~~~~~~~~~~~~~~~~~----~vi~~~h~~~~~~~~ 202 (562)
+..... ........+..+......++. .+.||++++......++. .+.+++. +++..+|. .++.+
T Consensus 62 ~~~~~g----~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~---~~~r~~~~~g~~v~vN~DG--lEWkR 132 (185)
T PF09314_consen 62 PAPKNG----SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFL---PFLRKLRKKGGKVVVNMDG--LEWKR 132 (185)
T ss_pred CCCCCC----chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHH---HHHHhhhhcCCcEEECCCc--chhhh
Confidence 000000 000001111112222222332 367899988765322221 1333332 55655553 33443
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCc
Q 008544 203 REKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSI 243 (562)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 243 (562)
.+++.+.+.+++.-.+...+. +|.+|+.|+..+++..+.
T Consensus 133 -~KW~~~~k~~lk~~E~~avk~-ad~lIaDs~~I~~y~~~~ 171 (185)
T PF09314_consen 133 -AKWGRPAKKYLKFSEKLAVKY-ADRLIADSKGIQDYIKER 171 (185)
T ss_pred -hhcCHHHHHHHHHHHHHHHHh-CCEEEEcCHHHHHHHHHH
Confidence 467777777777777777776 999999999999965533
No 126
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=1.7e-05 Score=80.07 Aligned_cols=207 Identities=14% Similarity=0.052 Sum_probs=122.2
Q ss_pred HhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEE
Q 008544 151 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 230 (562)
Q Consensus 151 ~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 230 (562)
+++.+.+...+||++++-+...++.- -....++..|.+-++|-..+.. +. |...-...+.+ ++|+++
T Consensus 75 ~~~~~~i~~~kpD~~i~IDsPdFnl~--vak~lrk~~p~i~iihYV~PsV------WA----Wr~~Ra~~i~~-~~D~lL 141 (381)
T COG0763 75 RELVRYILANKPDVLILIDSPDFNLR--VAKKLRKAGPKIKIIHYVSPSV------WA----WRPKRAVKIAK-YVDHLL 141 (381)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCchH--HHHHHHHhCCCCCeEEEECcce------ee----echhhHHHHHH-HhhHee
Confidence 44666777899999888766555443 1223333344444444211110 00 00000112233 379999
Q ss_pred EcChhhhccCCCccccc--ccc---CCCCcCcchhhhHHhhcCCCCCccE-EEEEee-cc-ccCCHHHHHHHHHHHHHhc
Q 008544 231 RLSAATQEYPNSIVCNV--HGV---NPKFLEIGEKKMEQQQNGNKAFTKG-AYYIGR-MV-WSKGYEELLGLLNIYHKEL 302 (562)
Q Consensus 231 ~~S~~~~~~~~~~~~~v--~GV---d~~~~~~~~~~~~~~~~~~~~~~~~-il~vGr-~~-~~Kg~~~ll~a~~~l~~~~ 302 (562)
+.=+...++..+..... .|- |...+.+ .+...+...+++.+.++ .+..|. -. -.+....+.+++.+++.++
T Consensus 142 ailPFE~~~y~k~g~~~~yVGHpl~d~i~~~~-~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~ 220 (381)
T COG0763 142 AILPFEPAFYDKFGLPCTYVGHPLADEIPLLP-DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARY 220 (381)
T ss_pred eecCCCHHHHHhcCCCeEEeCChhhhhccccc-cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhC
Confidence 99988888655432221 122 2222232 23335666777665555 456663 22 2456778899999999999
Q ss_pred CCcEEEEEeCCCCHHHHHHHH-HhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAA-KKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~-~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
|+.++++--.....+.++... +........+.......+.+..||+.+..| |++.+|+|.+|+|.|++-
T Consensus 221 ~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Y 290 (381)
T COG0763 221 PDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAY 290 (381)
T ss_pred CCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEE
Confidence 999999988755534443333 222212233333345568999999988887 999999999999988873
No 127
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.91 E-value=0.00013 Score=78.60 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=118.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC---CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR---FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 226 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~---~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 226 (562)
..++.+.+++++||++++-+....++- .++ ..++.+ |+++++--.. +.- +.++ .+.+.+. +
T Consensus 299 ~~~l~~~i~~~kPD~vIlID~PgFNlr-LAK-~lkk~Gi~ipviyYVsPqV--WAW--R~~R---------ikki~k~-v 362 (608)
T PRK01021 299 YRKLYKTILKTNPRTVICIDFPDFHFL-LIK-KLRKRGYKGKIVHYVCPSI--WAW--RPKR---------KTILEKY-L 362 (608)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCHH-HHH-HHHhcCCCCCEEEEECccc--eee--Ccch---------HHHHHHH-h
Confidence 345677788899999988776666554 233 334444 6666654221 110 0111 1223333 6
Q ss_pred cEEEEcChhhhccCCCcccccc--ccCC-CCcC-cchhhhHHhhcCCCCCccE-EEEEee-ccc-cCCHHHHHHHHH--H
Q 008544 227 HKVIRLSAATQEYPNSIVCNVH--GVNP-KFLE-IGEKKMEQQQNGNKAFTKG-AYYIGR-MVW-SKGYEELLGLLN--I 297 (562)
Q Consensus 227 d~vi~~S~~~~~~~~~~~~~v~--GVd~-~~~~-~~~~~~~~~~~~~~~~~~~-il~vGr-~~~-~Kg~~~ll~a~~--~ 297 (562)
|+++|.=+...++.++...++. |-.. +.+. .......++..+++++.++ .+..|. -.+ .+....+++++. .
T Consensus 363 D~ll~IfPFE~~~y~~~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~ 442 (608)
T PRK01021 363 DLLLLILPFEQNLFKDSPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASS 442 (608)
T ss_pred hhheecCccCHHHHHhcCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888886654333321 2211 1121 1122233555666555454 456663 222 456778888886 4
Q ss_pred HHHhcCCcEEEEEeCCCC-HHHHHHHHHhcC-CeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEee
Q 008544 298 YHKELAGLEMDLYGNGED-FDQIQRAAKKLK-LVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 298 l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~-l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t 375 (562)
+. ++.++++....+. .+.+++..+..+ +.+.+..+. +..++++.||+.+..| |++.+|++.+|+|.|+.
T Consensus 443 l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~ 513 (608)
T PRK01021 443 LA---STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCALAKC-----GTIVLETALNQTPTIVT 513 (608)
T ss_pred hc---cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEE
Confidence 33 2577777544322 466677665444 244554332 2368999999999988 99999999999998876
Q ss_pred C
Q 008544 376 N 376 (562)
Q Consensus 376 ~ 376 (562)
-
T Consensus 514 Y 514 (608)
T PRK01021 514 C 514 (608)
T ss_pred E
Confidence 3
No 128
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.87 E-value=0.00029 Score=74.20 Aligned_cols=120 Identities=14% Similarity=0.080 Sum_probs=81.4
Q ss_pred EEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCC
Q 008544 277 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTT 355 (562)
Q Consensus 277 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~ 355 (562)
+..|..... ..+++.+.....+. +.++++...+ .+..+. ++..++ .-++.+..+++..||++|..
T Consensus 242 vslGt~~~~---~~l~~~~~~a~~~l-~~~vi~~~~~-~~~~~~------~~p~n~~v~~~~p~~~~l~~ad~vI~h--- 307 (406)
T COG1819 242 VSLGTVGNA---VELLAIVLEALADL-DVRVIVSLGG-ARDTLV------NVPDNVIVADYVPQLELLPRADAVIHH--- 307 (406)
T ss_pred EEcCCcccH---HHHHHHHHHHHhcC-CcEEEEeccc-cccccc------cCCCceEEecCCCHHHHhhhcCEEEec---
Confidence 344555433 56666655555554 6777777643 211111 223333 45566777899999999976
Q ss_pred CCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEee----CCHHHHHHHHHHHHhCCCC
Q 008544 356 DVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTY----DGRNGFVEATLKALAEEPA 411 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~----~d~~~la~~i~~ll~~~~~ 411 (562)
|--.++.||+..|+|+|+-..+. .+-+++-..|... -+++.++++|+++++|+..
T Consensus 308 -GG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 308 -GGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred -CCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 44668999999999999986653 5556666777654 2899999999999998663
No 129
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.45 E-value=0.019 Score=56.83 Aligned_cols=268 Identities=13% Similarity=0.015 Sum_probs=146.0
Q ss_pred hcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcH-HHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcCh
Q 008544 156 IIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYL-EYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSA 234 (562)
Q Consensus 156 ~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~ 234 (562)
..+..+.+-+++|+.+..... ...+..+..+.-.++|-.-. -| +....++.++...+++...+. ..+|+++.
T Consensus 34 ~a~~~r~~rff~HGqFn~~lw--lall~g~~~~~q~yWhiWGaDLY---e~~~~lk~rlfy~lRR~aq~r-vg~v~atr- 106 (322)
T PRK02797 34 KAKANRAQRFFLHGQFNPTLW--LALLSGKIKPKQFYWHIWGADLY---EESKGLKFRLFYPLRRLAQKR-VGHVFATR- 106 (322)
T ss_pred HHhhCccceEEEecCCCHHHH--HHHHhCCcCccceEEEEEChhhh---hcccchhHHHHHHHHHHHHhh-cCeEEEec-
Confidence 334456777888887655333 12344444443444442211 12 222444555555555544443 47777743
Q ss_pred hhhccCCCccccccccCCCCcCcchhhhHH-hhcCCCCCccEEEEEeec-cccCCHHHHHHHHHHHHHhcCCcEEEEE-e
Q 008544 235 ATQEYPNSIVCNVHGVNPKFLEIGEKKMEQ-QQNGNKAFTKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-G 311 (562)
Q Consensus 235 ~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~-~~~~~~~~~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G 311 (562)
..-.+..+....+.|- .-+|++....... .........+..+.+|+- ++.-++.++++++.+.. ..++++++- |
T Consensus 107 GD~~~~a~~~~~v~~~-llyfpt~m~~~l~~~~~~~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~Pls 183 (322)
T PRK02797 107 GDLSYFAQRHPKVPGS-LLYFPTRMDPSLNTMANDRQRAGKMTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMG 183 (322)
T ss_pred chHHHHHHhcCCCCcc-EEecCCcchhhhccccccccCCCceEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECC
Confidence 2222211111111100 0111111111100 000111223566677765 45667878888887664 347887774 4
Q ss_pred C--CCC--HHHHHHHHHhcCC--eeEEe---CCCCChHHHHhhcCEEEEcc-CCCCCcHHHHHHHHcCCcEEeeCC-CC-
Q 008544 312 N--GED--FDQIQRAAKKLKL--VVRVY---PGRDHADPIFHDYKVFLNPS-TTDVVCTATAEALAMGKIVVCANH-PS- 379 (562)
Q Consensus 312 ~--g~~--~~~l~~~~~~l~l--~~~~~---~~~~~~~~l~~~adv~v~pS-~~E~~~~~~lEAma~G~PVI~t~~-~~- 379 (562)
. |+. .+++++.++++-. ++.++ ...++..++++.||+.++.- +.++.|+.+ =.+..|+||+.++. +.
T Consensus 184 Yp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~-lLi~~G~~v~l~r~n~fw 262 (322)
T PRK02797 184 YPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLC-LLIQLGKPVVLSRDNPFW 262 (322)
T ss_pred cCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHH-HHHHCCCcEEEecCCchH
Confidence 4 332 4667777776644 34443 44566668999999998885 678888654 47899999999854 44
Q ss_pred ccccccCCceEee-C--CHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHHhcCcc
Q 008544 380 NDFFKQFPNCRTY-D--GRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 380 ~e~v~~~~~g~~~-~--d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
.++.+.+..-+.. + |...+.++=+++...+...+ .|+-++..+.+.++++.+...
T Consensus 263 qdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I------~Ff~pn~~~~W~~~l~~~~g~ 320 (322)
T PRK02797 263 QDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNII------AFFSPNYLQGWRNALAIAAGE 320 (322)
T ss_pred HHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCccee------eecCHhHHHHHHHHHHHhhCC
Confidence 7777666655433 2 55555555444443333222 288899999999999877643
No 130
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.45 E-value=0.00033 Score=68.59 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=34.4
Q ss_pred eEEEEecccCC--CcccccccHHHHHHHHHHcCCCeEEEEeecCCc
Q 008544 51 HIAIFTTASLP--WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSL 94 (562)
Q Consensus 51 rI~ivt~~~~P--~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~ 94 (562)
||++||.-+.| ..||-+.....|+++|+++| |+|+|++|.+..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G-~~V~Vi~P~y~~ 45 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG-HDVRVIMPKYGF 45 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT--EEEEEEE-THH
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC-CeEEEEEccchh
Confidence 79999999999 56888899999999999998 999999997743
No 131
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.35 E-value=0.068 Score=52.73 Aligned_cols=219 Identities=13% Similarity=0.069 Sum_probs=122.3
Q ss_pred HHhHHhhcCcCCCcEEEe-cCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVL-EEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~-~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 227 (562)
...+.+++.+++||+.+. +++.. .+.+..++ |.|....+..... .++.+.-+ |+
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~l-------~rvafgLg~psIi~~D~ehA~~----------------qnkl~~Pl-a~ 128 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPEL-------PRVAFGLGIPSIIFVDNEHAEA----------------QNKLTLPL-AD 128 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcch-------hhHHhhcCCceEEecCChhHHH----------------Hhhcchhh-hh
Confidence 345888899999999876 33322 22444445 6665554322111 13333343 78
Q ss_pred EEEEcChhhhc----cC--CCccccccccCC----CCcCcchhhhHHhhcCCCCCccEEEE-----E-eeccccCCHHHH
Q 008544 228 KVIRLSAATQE----YP--NSIVCNVHGVNP----KFLEIGEKKMEQQQNGNKAFTKGAYY-----I-GRMVWSKGYEEL 291 (562)
Q Consensus 228 ~vi~~S~~~~~----~~--~~~~~~v~GVd~----~~~~~~~~~~~~~~~~~~~~~~~il~-----v-Gr~~~~Kg~~~l 291 (562)
.+++.+....+ .- ...+...+|+-. .-|.|+ ...-++.|+..+.+.|++ - .-..++++.+.+
T Consensus 129 ~ii~P~~~~~~~~~~~G~~p~~i~~~~giae~~~v~~f~pd--~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~ 206 (346)
T COG1817 129 VIITPEAIDEEELLDFGADPNKISGYNGIAELANVYGFVPD--PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVL 206 (346)
T ss_pred heecccccchHHHHHhCCCccceecccceeEEeecccCCCC--HHHHHHcCCCCCCceEEEeeccccceeeccccchhhH
Confidence 88888754443 21 123444455422 223443 334556777765555442 1 123456677777
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK 370 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~ 370 (562)
.++++.+.+.. .+++-.... .++..+. .++.+. -...|.-+++-.|++++-. -|+---||...|+
T Consensus 207 ~~li~~l~k~g----iV~ipr~~~---~~eife~--~~n~i~pk~~vD~l~Llyya~lvig~-----ggTMarEaAlLGt 272 (346)
T COG1817 207 PDLIKELKKYG----IVLIPREKE---QAEIFEG--YRNIIIPKKAVDTLSLLYYATLVIGA-----GGTMAREAALLGT 272 (346)
T ss_pred HHHHHHHHhCc----EEEecCchh---HHHHHhh--hccccCCcccccHHHHHhhhheeecC-----CchHHHHHHHhCC
Confidence 78887776542 444443222 2222221 122221 2233444677788888743 3778899999999
Q ss_pred cEEeeCCCC----ccccccCCceEee--CCHHHHHHHHHHHHhCCC
Q 008544 371 IVVCANHPS----NDFFKQFPNCRTY--DGRNGFVEATLKALAEEP 410 (562)
Q Consensus 371 PVI~t~~~~----~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~ 410 (562)
|.|.+..|- .++.. ..|.++ .|+.+..+...+.+.++.
T Consensus 273 paIs~~pGkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 273 PAISCYPGKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred ceEEecCCccccccHHHH--hcCceeecCCHHHHHHHHHHHhhchh
Confidence 999998551 33332 456665 378888888888887765
No 132
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.01 Score=59.99 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=77.3
Q ss_pred CCChHHHHhhcCEEEEccC---CCC---CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 336 RDHADPIFHDYKVFLNPST---TDV---VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~pS~---~E~---~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
.+.....++..|++++-++ .++ +.+.+.|+|+||.|-|+....+ ..++.+|..-.++.|.+++.+.+..++..
T Consensus 248 ~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kdl~~~~~yll~h 327 (373)
T COG4641 248 KDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKDLKEKLKYLLNH 327 (373)
T ss_pred cchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHHHHHHHHHHhcC
Confidence 4555677777888877643 233 3888999999999999998887 78888888888899999999999999999
Q ss_pred CCC--CccHHHH----hcCCHHHHHHHHHHHHHh
Q 008544 409 EPA--QPTDAQT----HQLSWESATERFLQVAEL 436 (562)
Q Consensus 409 ~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~ 436 (562)
+.+ ++++.+. ..++.+.-...+++..+.
T Consensus 328 ~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~s 361 (373)
T COG4641 328 PDERKEIAECAYERVLARHTYEERIFKLLNEIAS 361 (373)
T ss_pred cchHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Confidence 865 6666554 457777666666555543
No 133
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.046 Score=52.45 Aligned_cols=188 Identities=15% Similarity=0.089 Sum_probs=104.2
Q ss_pred CcCCCcEEEecCCchhhhhhchHHHHhhcCC--EEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChh
Q 008544 158 PDEEADIAVLEEPEHLTWFHHGKRWKAKFRF--VVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAA 235 (562)
Q Consensus 158 ~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~--vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~ 235 (562)
.+..||+++..+-... .....+++++.. +|.+.+-..+ +. . -|.||..-..
T Consensus 67 p~~~Pdl~I~aGrrta---~l~~~lkk~~~~~~vVqI~~Prlp-~~---------------------~--fDlvivp~HD 119 (329)
T COG3660 67 PEQRPDLIITAGRRTA---PLAFYLKKKFGGIKVVQIQDPRLP-YN---------------------H--FDLVIVPYHD 119 (329)
T ss_pred ccCCCceEEecccchh---HHHHHHHHhcCCceEEEeeCCCCC-cc---------------------c--ceEEeccchh
Confidence 4567999999887655 223446777663 4444442222 11 1 1766666544
Q ss_pred hhccC---CCccccccccCCC----CcCcchhhhHHhhcCCCCCccEEEEEeeccccCCH-----HHHHHHHHHHHHhcC
Q 008544 236 TQEYP---NSIVCNVHGVNPK----FLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGY-----EELLGLLNIYHKELA 303 (562)
Q Consensus 236 ~~~~~---~~~~~~v~GVd~~----~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~-----~~ll~a~~~l~~~~~ 303 (562)
-.+.. ...+..++|...+ +..+... . .+.........+.++||.-.+.-.+ ..+..++.+...+ .
T Consensus 120 ~~~~~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e-~-~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-~ 196 (329)
T COG3660 120 WREELSDQGPNILPINGSPHNVTSQRLAALRE-A-FKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-Q 196 (329)
T ss_pred hhhhhhccCCceeeccCCCCcccHHHhhhhHH-H-HHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-C
Confidence 44321 1223333454332 2222111 1 1122222336678899976555444 2333333333322 2
Q ss_pred CcEEEEEeCCCCHHHHHHHHHh-cC-CeeEEeCC----CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKK-LK-LVVRVYPG----RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~-l~-l~~~~~~~----~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
...+++--+....+.+++.++. +. ....++.+ .+...++++.||.+|.+.-+ =.-.-||.+.|+||-+...
T Consensus 197 g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 197 GGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFILEP 273 (329)
T ss_pred CceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEEec
Confidence 5778887776666777777765 32 22445443 45566999999999987432 2246799999999988755
Q ss_pred C
Q 008544 378 P 378 (562)
Q Consensus 378 ~ 378 (562)
+
T Consensus 274 ~ 274 (329)
T COG3660 274 P 274 (329)
T ss_pred C
Confidence 3
No 134
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.03 E-value=0.0059 Score=62.71 Aligned_cols=91 Identities=13% Similarity=-0.018 Sum_probs=62.0
Q ss_pred cEEEEEeecc--ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 274 KGAYYIGRMV--WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 274 ~~il~vGr~~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
.+.++-|.-. -.+.+..+++++.++.++. ..+++.+... .+.+++...+.. ...+. ++..++|+.||+.+.
T Consensus 169 ~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~--~~~~i~~a~~-~~~i~~~~~~~~-~~~~~---~~~~~~m~~aDlal~ 241 (347)
T PRK14089 169 TIAFMPGSRKSEIKRLMPIFKELAKKLEGKE--KILVVPSFFK-GKDLKEIYGDIS-EFEIS---YDTHKALLEAEFAFI 241 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHhhcC--cEEEEeCCCc-HHHHHHHHhcCC-CcEEe---ccHHHHHHhhhHHHh
Confidence 3445555321 1345677789998887653 7788877643 456666554322 23344 255689999999998
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
.| |++.+|++.+|+|.|..-
T Consensus 242 ~S-----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 242 CS-----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred cC-----cHHHHHHHHhCCCEEEEE
Confidence 87 889999999999988853
No 135
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.76 E-value=0.11 Score=52.07 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=76.7
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcE---EEEEeCCCCHHHHHHHHHhcC--CeeEEeCCCCChHHHHhhcC
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLE---MDLYGNGEDFDQIQRAAKKLK--LVVRVYPGRDHADPIFHDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~---l~ivG~g~~~~~l~~~~~~l~--l~~~~~~~~~~~~~l~~~ad 347 (562)
..+++.+|. -.-|.+++..+++.. ...|+++ +++.|.--..++.+++...-. ..+.++...++..++++.|+
T Consensus 220 ~~Ilvs~GG--G~dG~eLi~~~l~A~-~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~ 296 (400)
T COG4671 220 FDILVSVGG--GADGAELIETALAAA-QLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR 296 (400)
T ss_pred ceEEEecCC--ChhhHHHHHHHHHHh-hhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh
Confidence 456666764 334555444444332 3334544 444454222333333333322 35788888999999999999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCC--Cccc-ccc---CCceEe---e-C--CHHHHHHHHHHHHhCC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHP--SNDF-FKQ---FPNCRT---Y-D--GRNGFVEATLKALAEE 409 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~--~~e~-v~~---~~~g~~---~-~--d~~~la~~i~~ll~~~ 409 (562)
..|.-+ | =+++.|-+++|||.+.-... +.|- +.. .+-|++ . + +++.++++|..+++.|
T Consensus 297 ~vVSm~---G-YNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 297 LVVSMG---G-YNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred eeeecc---c-chhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 988654 2 25788999999997665443 3222 211 233333 1 2 6788888888888754
No 136
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.25 E-value=0.0002 Score=65.72 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=63.6
Q ss_pred CcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC---
Q 008544 304 GLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS--- 379 (562)
Q Consensus 304 ~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~--- 379 (562)
++++++ .|.. ..+.........+.++.+++..+++.++|+.||+.|.- +-+.++.|++++|+|.|.-..+.
T Consensus 31 ~~~viv~~G~~-~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~ 105 (167)
T PF04101_consen 31 NIQVIVQTGKN-NYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAAD 105 (167)
T ss_dssp HCCCCCCCTTC-ECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T
T ss_pred CcEEEEEECCC-cHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcch
Confidence 355544 4544 33333333444445678888888899999999988853 34679999999999987654432
Q ss_pred ------ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC
Q 008544 380 ------NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 380 ------~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~ 411 (562)
...+.+...+..+. +++.+.++|.++++++..
T Consensus 106 ~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 106 NHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp -CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 22233333344331 577899999998887764
No 137
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=96.24 E-value=0.34 Score=48.90 Aligned_cols=156 Identities=16% Similarity=0.063 Sum_probs=96.2
Q ss_pred ccEEEEEeec-cccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCCC----HHHHHHHHHhcCC--eeEEe---CCCCChHH
Q 008544 273 TKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDL-YGNGED----FDQIQRAAKKLKL--VVRVY---PGRDHADP 341 (562)
Q Consensus 273 ~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~~----~~~l~~~~~~l~l--~~~~~---~~~~~~~~ 341 (562)
.+.-+.+|+- ++.-+..++++++.+.. ..++++++ .|.|.. .+++++.++++-. ++.++ .+.++.-+
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 4555677765 45667877777776533 34688776 455542 4666677766532 34443 44566668
Q ss_pred HHhhcCEEEEcc-CCCCCcHHHHHHHHcCCcEEeeCCC-C-ccccccCCceEee-C--CHHHHHHHHHHHHhCCCCCccH
Q 008544 342 IFHDYKVFLNPS-TTDVVCTATAEALAMGKIVVCANHP-S-NDFFKQFPNCRTY-D--GRNGFVEATLKALAEEPAQPTD 415 (562)
Q Consensus 342 l~~~adv~v~pS-~~E~~~~~~lEAma~G~PVI~t~~~-~-~e~v~~~~~g~~~-~--d~~~la~~i~~ll~~~~~~l~~ 415 (562)
+++.||+.++.. +.++.|+ +.=.+.+|+||+-++.. - .++.+.+..-+.. + |.+.+.++=+++..-+...+.
T Consensus 262 lL~~cDl~if~~~RQQgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~~dk~~ia- 339 (360)
T PF07429_consen 262 LLSRCDLGIFNHNRQQGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLANVDKQQIA- 339 (360)
T ss_pred HHHhCCEEEEeechhhhHhH-HHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhhCccccee-
Confidence 999999999997 5778775 55589999999999554 4 5555554434333 3 666777776666654443222
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc
Q 008544 416 AQTHQLSWESATERFLQVAELV 437 (562)
Q Consensus 416 ~ar~~~sw~~~~~~~~~~y~~~ 437 (562)
|.-....+.+.++...+
T Consensus 340 -----Ff~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 340 -----FFAPNYLQGWRQALRLA 356 (360)
T ss_pred -----eeCCchHHHHHHHHHHH
Confidence 33344444444444433
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.13 E-value=0.62 Score=46.40 Aligned_cols=98 Identities=16% Similarity=0.118 Sum_probs=61.7
Q ss_pred EEEEEeeccccC--CHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcC-CeeEEeCCC---CChHHHHhhcCE
Q 008544 275 GAYYIGRMVWSK--GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLK-LVVRVYPGR---DHADPIFHDYKV 348 (562)
Q Consensus 275 ~il~vGr~~~~K--g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~-l~~~~~~~~---~~~~~l~~~adv 348 (562)
+++..|.-.+.| ..+...++++.+.++ +++++++|..++.+..++..+..+ ..+..+.+. .+...+++.+|+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 334444433444 345777777777765 789999998766666666655442 223333333 344488889999
Q ss_pred EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 349 FLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
+|.+.. | ++--|.|+|+|+|+--.+.
T Consensus 202 ~I~~Ds----g-~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 202 VVTNDS----G-PMHLAAALGTPTVALFGPT 227 (279)
T ss_pred EEeeCC----H-HHHHHHHcCCCEEEEECCC
Confidence 997742 2 3444579999999885543
No 139
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.09 E-value=0.0023 Score=65.24 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=66.8
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCC-ce-EeeC----CHH----HHHHHH
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFP-NC-RTYD----GRN----GFVEAT 402 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~-~g-~~~~----d~~----~la~~i 402 (562)
|.+++.+.|++.|+||++|++|.+..|+-.||+|-|+|+..| .|.+++.. .| ++++ .++ +++.-|
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 566899999999999999999999999999999999998865 56665543 23 3332 444 455444
Q ss_pred HHHHhCCCC-CccHHHH-----hcCCHHHHHHHHHHHHHhcC
Q 008544 403 LKALAEEPA-QPTDAQT-----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 403 ~~ll~~~~~-~l~~~ar-----~~~sw~~~~~~~~~~y~~~~ 438 (562)
.+....... ++-++.| .-++|..+...|.++-..+.
T Consensus 573 ~~F~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 573 YEFCKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 444332221 2222211 56788877766666544333
No 140
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=1.3 Score=45.59 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred ccEEEEEe-eccccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC---CCChHHHHhhc
Q 008544 273 TKGAYYIG-RMVWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG---RDHADPIFHDY 346 (562)
Q Consensus 273 ~~~il~vG-r~~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~---~~~~~~l~~~a 346 (562)
..+++..| .-...|++. ...+.+..+.++. .++++.|+.++.+..+++.+..+..+. +.+ ..+...+++.|
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~-l~~k~sL~e~~~li~~a 252 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVI-LAGKTSLEELAALIAGA 252 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccc-cCCCCCHHHHHHHHhcC
Confidence 34566667 555677654 6667777777664 899999987666666677666653333 333 33444888899
Q ss_pred CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 347 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 347 dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
|++|.+.. -.+-=|.|.|+|+|+--.+.
T Consensus 253 ~l~I~~DS-----g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 253 DLVIGNDS-----GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred CEEEccCC-----hHHHHHHHcCCCEEEEECCC
Confidence 99997753 24555789999999985543
No 141
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=95.79 E-value=0.09 Score=47.27 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=47.8
Q ss_pred HhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEE
Q 008544 154 TEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 231 (562)
Q Consensus 154 ~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 231 (562)
.+......+|+|++.+.-.+.-+ .-+...+. |++.++|.|-..|........ -..-.+.++....-||.|+.
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l---~gL~p~l~~~p~ilYFHENQl~YP~~~~~~r---d~~~~~~ni~saLaAD~v~F 125 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATL---RGLRPDLANVPKILYFHENQLAYPVSPGQER---DFQYGMNNIYSALAADRVVF 125 (168)
T ss_pred hccccccCCCEEEeeccccHHHH---HhhccCCCCCCEEEEEecCcccCCCCCCccc---cccHHHHHHHHHHhceeeee
Confidence 44555677899999988766444 11332333 899999999555543322111 11122233333445899999
Q ss_pred cChhhhc
Q 008544 232 LSAATQE 238 (562)
Q Consensus 232 ~S~~~~~ 238 (562)
.|...++
T Consensus 126 NS~~nr~ 132 (168)
T PF12038_consen 126 NSAFNRD 132 (168)
T ss_pred cchhhHH
Confidence 9988887
No 142
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.67 E-value=3.1 Score=42.93 Aligned_cols=100 Identities=11% Similarity=0.177 Sum_probs=59.6
Q ss_pred ccEEEEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCC-eeEEeCCCC---ChHHHHh
Q 008544 273 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKL-VVRVYPGRD---HADPIFH 344 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l-~~~~~~~~~---~~~~l~~ 344 (562)
..+++..|.-.+.|.+ +...+.+..+.+. +.+++++|...+ .+..++.++.... .+..+.+.. +...+++
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 261 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALID 261 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHH
Confidence 4566677765566654 4666666666543 688888876432 2223444433221 222244433 3448889
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.||++|..- +. .+-=|.|+|+|+|+--.+.
T Consensus 262 ~a~l~v~nD---SG--p~HlAaA~g~P~v~lfGpt 291 (352)
T PRK10422 262 HAQLFIGVD---SA--PAHIAAAVNTPLICLFGAT 291 (352)
T ss_pred hCCEEEecC---CH--HHHHHHHcCCCEEEEECCC
Confidence 999999664 22 3445678899999875443
No 143
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.50 E-value=0.38 Score=48.72 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=67.9
Q ss_pred ccEEEEEeeccccC--CHH---HHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcC---CeeEEeCC--CCChHHH
Q 008544 273 TKGAYYIGRMVWSK--GYE---ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLK---LVVRVYPG--RDHADPI 342 (562)
Q Consensus 273 ~~~il~vGr~~~~K--g~~---~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~---l~~~~~~~--~~~~~~l 342 (562)
..+.+.+|.-+..- +.+ .+++.+..+.+..+ ..+.|..+..-.++.++...++- ..+.++.+ .+...++
T Consensus 147 p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~ 225 (311)
T PF06258_consen 147 PRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGF 225 (311)
T ss_pred CeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHH
Confidence 55677888533322 223 66777777776664 88999998665544444443322 23445533 4556699
Q ss_pred HhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 343 FHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 343 ~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
|+.||.++.+.-+ -.-+.||++.|+||..-..++
T Consensus 226 La~ad~i~VT~DS---vSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 226 LAAADAIVVTEDS---VSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHhCCEEEEcCcc---HHHHHHHHHcCCCEEEecCCC
Confidence 9999999987433 335899999999999987753
No 144
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=94.80 E-value=0.16 Score=53.00 Aligned_cols=178 Identities=10% Similarity=0.024 Sum_probs=87.2
Q ss_pred ccEEEEcChhhhccCCCc------cccccccCC--CCcCcch--hhhHHhhcCCCCCccEEEEEeeccccCC------HH
Q 008544 226 CHKVIRLSAATQEYPNSI------VCNVHGVNP--KFLEIGE--KKMEQQQNGNKAFTKGAYYIGRMVWSKG------YE 289 (562)
Q Consensus 226 ad~vi~~S~~~~~~~~~~------~~~v~GVd~--~~~~~~~--~~~~~~~~~~~~~~~~il~vGr~~~~Kg------~~ 289 (562)
.|.+++.|+..++...+. ...+.|..- ..+.... ........+.+.++++|+|+-....... ..
T Consensus 135 ~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~ 214 (369)
T PF04464_consen 135 YDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFF 214 (369)
T ss_dssp -SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS---
T ss_pred CcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccc
Confidence 599999998888742211 111224322 1111111 1223445677777889999865432222 12
Q ss_pred HHH--HHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHH
Q 008544 290 ELL--GLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 290 ~ll--~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 367 (562)
..+ +.+. ....+++.+++-............ ......+.......+..+++..+|++|-= ++..+.|++.
T Consensus 215 ~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLITD-----ySSi~fD~~~ 286 (369)
T PF04464_consen 215 SDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILITD-----YSSIIFDFLL 286 (369)
T ss_dssp -TT-HHHHH--HHHTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEES-----S-THHHHHGG
T ss_pred cccCHHHHH--HHhCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEEe-----chhHHHHHHH
Confidence 222 2232 223457888777642111111111 12233355556677888999999999843 4668999999
Q ss_pred cCCcEEee--CCCC----ccc---cccCCceEeeCCHHHHHHHHHHHHhCCCC
Q 008544 368 MGKIVVCA--NHPS----NDF---FKQFPNCRTYDGRNGFVEATLKALAEEPA 411 (562)
Q Consensus 368 ~G~PVI~t--~~~~----~e~---v~~~~~g~~~~d~~~la~~i~~ll~~~~~ 411 (562)
+++|||-. |... ..+ ..+...|-++.+.++|.++|..+++++..
T Consensus 287 l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~~~ 339 (369)
T PF04464_consen 287 LNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIENPDE 339 (369)
T ss_dssp GT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHHH
T ss_pred hCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhCCHH
Confidence 99999965 3321 111 22334466678999999999998876543
No 145
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=94.80 E-value=0.21 Score=54.30 Aligned_cols=125 Identities=15% Similarity=-0.008 Sum_probs=72.7
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEc
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNP 352 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~p 352 (562)
..+.+..|.+.. .-.+..++++.+..++.|+ ++++.-.+.....+. .++.+ ...-+..++++...+-++=
T Consensus 277 ~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l~-------~n~~~-~~W~PQ~~lL~hp~v~~fi 346 (500)
T PF00201_consen 277 GVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENLP-------KNVLI-VKWLPQNDLLAHPRVKLFI 346 (500)
T ss_dssp EEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHHH-------TTEEE-ESS--HHHHHTSTTEEEEE
T ss_pred CEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-ccccccccccccccc-------ceEEE-eccccchhhhhcccceeee
Confidence 344556677653 3445555555555566776 777776653222221 13333 3344566888766543333
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCC
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEE 409 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~ 409 (562)
+. |--.++.||+.+|+|+|+-..-+ ...+.+...|...+ +.+++.++|.++++|+
T Consensus 347 tH--gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 347 TH--GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp ES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred ec--cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 32 55778999999999999987643 44455555566543 7899999999999874
No 146
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.74 E-value=0.49 Score=46.93 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=65.4
Q ss_pred ccEEEEEeecccc-------CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-----HHHHHHHHHhcCCeeEEeCCCCChH
Q 008544 273 TKGAYYIGRMVWS-------KGYEELLGLLNIYHKELAGLEMDLYGNGED-----FDQIQRAAKKLKLVVRVYPGRDHAD 340 (562)
Q Consensus 273 ~~~il~vGr~~~~-------Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-----~~~l~~~~~~l~l~~~~~~~~~~~~ 340 (562)
++.|++.....+. .....+++.+..+.+..|+.++++-=...+ ...+.+... ...+.++....+..
T Consensus 117 ~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 194 (269)
T PF05159_consen 117 KKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN--LPNVVIIDDDVNLY 194 (269)
T ss_pred CCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc--CCCeEEECCCCCHH
Confidence 4555555554433 255677788888888888999887654211 122222211 22244556667888
Q ss_pred HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 341 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 341 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+++..||.++.-+ +++-+|||.+|+|||+...+
T Consensus 195 ~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 195 ELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 9999999777543 67899999999999998664
No 147
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.57 E-value=7.6 Score=41.28 Aligned_cols=116 Identities=11% Similarity=0.120 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeC-------CCC-HHHHHHHHHhcCCe--eEEe-CCCCChH--HHHhhcCEEEEccCC
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGN-------GED-FDQIQRAAKKLKLV--VRVY-PGRDHAD--PIFHDYKVFLNPSTT 355 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~-------g~~-~~~l~~~~~~l~l~--~~~~-~~~~~~~--~l~~~adv~v~pS~~ 355 (562)
..+.+++..+.++ +.+++++-. +++ ....++..+.+.-. .++. ....+.+ .+++.||++|-.-.+
T Consensus 260 ~~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH 337 (426)
T PRK10017 260 KAFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH 337 (426)
T ss_pred HHHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch
Confidence 3455666666555 455555543 233 23334444444322 2343 3334444 889999999977544
Q ss_pred CCCcHHHHHHHHcCCcEEeeCCCC--ccccccC-CceEee--C--CHHHHHHHHHHHHhCCCC
Q 008544 356 DVVCTATAEALAMGKIVVCANHPS--NDFFKQF-PNCRTY--D--GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~~~--~e~v~~~-~~g~~~--~--d~~~la~~i~~ll~~~~~ 411 (562)
.++=|+++|+|+|+-.... ..++.+- ...+.. + +.+++.+.+.+++++.+.
T Consensus 338 -----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~ 395 (426)
T PRK10017 338 -----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPA 395 (426)
T ss_pred -----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHH
Confidence 6788999999999986643 4444322 122322 2 678899999999987654
No 148
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=93.94 E-value=0.44 Score=51.19 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=98.4
Q ss_pred ccEEEEEeecc-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
....+..|+-. .+||-+..++++.+ +-+++-.+.+.......+-..++++|+ ....+..++++.+.+||-
T Consensus 277 ~~~AlVyGK~~~~w~~k~~~l~~l~~----~~eih~tV~~~~~~~~~~P~~V~NHG~-----l~~~ef~~lL~~akvfiG 347 (559)
T PF15024_consen 277 KNQALVYGKERYMWKGKEKYLDVLHK----YMEIHGTVYDEPQRPPNVPSFVKNHGI-----LSGDEFQQLLRKAKVFIG 347 (559)
T ss_pred cceeEEEccchhhhcCcHHHHHHHHh----hcEEEEEeccCCCCCcccchhhhhcCc-----CCHHHHHHHHHhhhEeee
Confidence 34555666543 36788888888744 335666665543323445555555554 456677799999999997
Q ss_pred ccC-CCCCcHHHHHHHHcCCcEEeeCCC---C---cccccc-------------------CCceEee--CCHHHHHHHHH
Q 008544 352 PST-TDVVCTATAEALAMGKIVVCANHP---S---NDFFKQ-------------------FPNCRTY--DGRNGFVEATL 403 (562)
Q Consensus 352 pS~-~E~~~~~~lEAma~G~PVI~t~~~---~---~e~v~~-------------------~~~g~~~--~d~~~la~~i~ 403 (562)
... +| |=+.+||+|+|+|.|-.... + .+++.+ .+..+.+ +|.+++.+||+
T Consensus 348 lGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk 425 (559)
T PF15024_consen 348 LGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVK 425 (559)
T ss_pred cCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHH
Confidence 643 55 34789999999999987532 1 223322 2333444 49999999999
Q ss_pred HHHhCCCCCccHHHHhcCCHHHHHHHHHHHHHh
Q 008544 404 KALAEEPAQPTDAQTHQLSWESATERFLQVAEL 436 (562)
Q Consensus 404 ~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y~~ 436 (562)
++++.+....-. .+|+-+.+.+|+..+.+.
T Consensus 426 ~il~~~v~Py~P---~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 426 AILATPVEPYLP---YEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHhcCCCCcCC---cccCHHHHHHHHHHHHHh
Confidence 999987652111 468888999988766653
No 149
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.91 E-value=2.7 Score=45.28 Aligned_cols=127 Identities=11% Similarity=-0.029 Sum_probs=73.3
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEc
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNP 352 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~p 352 (562)
..+.+..|..... ..+.+-+.+..+... +.+++++..++ ...+.+... .+..+. +.-+..+++...++..+-
T Consensus 275 ~vvyvsfGs~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~-~~~~~~~~~---~~~~v~-~w~pQ~~iL~h~~v~~fv 346 (459)
T PLN02448 275 SVLYVSLGSFLSV-SSAQMDEIAAGLRDS--GVRFLWVARGE-ASRLKEICG---DMGLVV-PWCDQLKVLCHSSVGGFW 346 (459)
T ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhC--CCCEEEEEcCc-hhhHhHhcc---CCEEEe-ccCCHHHHhccCccceEE
Confidence 3455666765331 223333333333332 56777765533 222333221 123333 566777899888873333
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEee---------CCHHHHHHHHHHHHhCC
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY---------DGRNGFVEATLKALAEE 409 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~---------~d~~~la~~i~~ll~~~ 409 (562)
+. +--.+++||+++|+|+|+-...+ ...+.+. ..|+-+ -+.+++.+++++++.++
T Consensus 347 tH--gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 347 TH--CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred ec--CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 32 44568999999999999987654 3334332 334332 26789999999999875
No 150
>PRK14986 glycogen phosphorylase; Provisional
Probab=92.68 E-value=0.52 Score=53.19 Aligned_cols=133 Identities=13% Similarity=0.004 Sum_probs=89.5
Q ss_pred CCCCccEEEEEeeccccCCHHH-HHHHHH---HHHHhc----CCcEEEEEeCCC---C-H----HHHHHHHH------hc
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEE-LLGLLN---IYHKEL----AGLEMDLYGNGE---D-F----DQIQRAAK------KL 326 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~-ll~a~~---~l~~~~----~~~~l~ivG~g~---~-~----~~l~~~~~------~l 326 (562)
+.++...++++-|+..+|...+ ++..+. +++..- ...++++.|.-. . . +.+.+.++ ..
T Consensus 539 ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v 618 (815)
T PRK14986 539 VNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQI 618 (815)
T ss_pred cCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 3455667788889999999888 655544 444321 236777777621 1 1 22223333 11
Q ss_pred CC--eeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHH
Q 008544 327 KL--VVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRN 396 (562)
Q Consensus 327 ~l--~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~ 396 (562)
+. ++.|+..++ -.+.++..+|+-.+.|+ .|..|+.=+=+|.-|.+.+.|--|. .|+.++ +.|||++. +.+
T Consensus 619 ~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ 698 (815)
T PRK14986 619 GDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAE 698 (815)
T ss_pred cCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHH
Confidence 21 344555543 33378889999999886 8999999999999999999997776 777765 78999996 555
Q ss_pred HHHHH
Q 008544 397 GFVEA 401 (562)
Q Consensus 397 ~la~~ 401 (562)
++.+.
T Consensus 699 ev~~~ 703 (815)
T PRK14986 699 EVEAL 703 (815)
T ss_pred HHHHH
Confidence 55443
No 151
>PLN02670 transferase, transferring glycosyl groups
Probab=92.51 E-value=2.4 Score=45.58 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=64.3
Q ss_pred CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC--------CHHHHHH
Q 008544 334 PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD--------GRNGFVE 400 (562)
Q Consensus 334 ~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~--------d~~~la~ 400 (562)
.+.....++++..++..+-|. +--++++||+++|+|+|+-...+ ...+..-..|..++ +.+++.+
T Consensus 344 ~~W~PQ~~IL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~ 421 (472)
T PLN02670 344 VGWVPQVKILSHESVGGFLTH--CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAE 421 (472)
T ss_pred eCcCCHHHHhcCcccceeeec--CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHH
Confidence 455667788888776444333 34578999999999999986643 33444445565541 5789999
Q ss_pred HHHHHHhCCCC-CccHHHH-------hcCCHHHHHHHHHHHHH
Q 008544 401 ATLKALAEEPA-QPTDAQT-------HQLSWESATERFLQVAE 435 (562)
Q Consensus 401 ~i~~ll~~~~~-~l~~~ar-------~~~sw~~~~~~~~~~y~ 435 (562)
+|.+++.+++. .++++++ ..=.-+.+++.+++...
T Consensus 422 av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~ 464 (472)
T PLN02670 422 SVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLR 464 (472)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 99999987542 4444433 33444555555555433
No 152
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.37 E-value=0.72 Score=42.21 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=49.6
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcH------HHHhhhhchHHHHHHHHH---HHHHHHHHhcc
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYL------EYVKREKNDRLQAFLLEF---VNSWLARVHCH 227 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~ad 227 (562)
.+.||||+.|....-.++ ++.-+. |++.++-..|. .+....... ......-. ....+....||
T Consensus 64 Gf~PDvI~~H~GWGe~Lf-----lkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~-~~~~~~~r~rN~~~l~~l~~~D 137 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLF-----LKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPS-LDDRARLRMRNAHNLLALEQAD 137 (171)
T ss_pred CCCCCEEEEcCCcchhhh-----HHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCC-HHHHHHHHHHhHHHHHHHHhCC
Confidence 467899999988776555 555554 55554321110 000001111 11112111 12222222589
Q ss_pred EEEEcChhhhcc-C---CCcccccc-ccCCCCc
Q 008544 228 KVIRLSAATQEY-P---NSIVCNVH-GVNPKFL 255 (562)
Q Consensus 228 ~vi~~S~~~~~~-~---~~~~~~v~-GVd~~~~ 255 (562)
..++.|...+.. | ++++.+++ |||++.+
T Consensus 138 ~~isPT~wQ~~~fP~~~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 138 AGISPTRWQRSQFPAEFRSKISVIHDGIDTDRF 170 (171)
T ss_pred cCcCCCHHHHHhCCHHHHcCcEEeecccchhhc
Confidence 999999999883 3 35566666 9998764
No 153
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.02 E-value=2.3 Score=45.97 Aligned_cols=170 Identities=11% Similarity=-0.019 Sum_probs=107.8
Q ss_pred HhhcCCCCCccEEEEEeecc-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC-CHHHHHHHHHhcCCe-eEE-eCCCC--
Q 008544 264 QQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGE-DFDQIQRAAKKLKLV-VRV-YPGRD-- 337 (562)
Q Consensus 264 ~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~-~~~~l~~~~~~l~l~-~~~-~~~~~-- 337 (562)
+...+++++..+ .+.+. -.|=-...++.+..+.+..|+..|++.-..- .++.++..+.++|++ .++ |.+..
T Consensus 750 r~~y~Lp~d~vv---f~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k 826 (966)
T KOG4626|consen 750 RSQYGLPEDAVV---FCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAK 826 (966)
T ss_pred CCCCCCCCCeEE---EeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccch
Confidence 445677765533 23333 2566668899999999999998888876522 147888999999987 333 55432
Q ss_pred -ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-------ccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 338 -HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-------NDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 338 -~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-------~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
+.-.-...+||.+-+...-| -++-.|.+.+|+|+|+-.... .....-|..-++..+.+|..+.-.++-.|.
T Consensus 827 ~eHvrr~~LaDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~ 905 (966)
T KOG4626|consen 827 EEHVRRGQLADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDK 905 (966)
T ss_pred HHHHHhhhhhhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCH
Confidence 22255667899887766544 456789999999999875432 122222223344578888888777777766
Q ss_pred CC--CccHHHH------hcCCHHHHHHHHHHHHHhc
Q 008544 410 PA--QPTDAQT------HQLSWESATERFLQVAELV 437 (562)
Q Consensus 410 ~~--~l~~~ar------~~~sw~~~~~~~~~~y~~~ 437 (562)
+. .++.+-+ --|+-...+..+++.|...
T Consensus 906 ~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~M 941 (966)
T KOG4626|consen 906 EYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQM 941 (966)
T ss_pred HHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHH
Confidence 54 4443332 3455555555566555543
No 154
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.61 E-value=1.4 Score=36.15 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=53.1
Q ss_pred EEEEeC-CCCHHHHHHHHHhcCCeeEEe---CCCCC----hHHHHhhcCEEEEccC---CCCCcHHHHHHHHcCCcEEee
Q 008544 307 MDLYGN-GEDFDQIQRAAKKLKLVVRVY---PGRDH----ADPIFHDYKVFLNPST---TDVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 307 l~ivG~-g~~~~~l~~~~~~l~l~~~~~---~~~~~----~~~l~~~adv~v~pS~---~E~~~~~~lEAma~G~PVI~t 375 (562)
++|+|. ......+++.+++.|....++ ++..+ .+..+..+|+.|++.. ++..-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567775 345788999999999988878 33222 4567778898887753 444566677888899999999
Q ss_pred CCCC
Q 008544 376 NHPS 379 (562)
Q Consensus 376 ~~~~ 379 (562)
+..+
T Consensus 82 ~~~~ 85 (97)
T PF10087_consen 82 RSRG 85 (97)
T ss_pred CCCC
Confidence 8633
No 155
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.91 E-value=5.6 Score=42.61 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=51.4
Q ss_pred CCCChHHHHhhcCE--EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEee---CCHHHHHHHHH
Q 008544 335 GRDHADPIFHDYKV--FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY---DGRNGFVEATL 403 (562)
Q Consensus 335 ~~~~~~~l~~~adv--~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~---~d~~~la~~i~ 403 (562)
+.....+++...++ ||.- +--++++||+++|+|+|+-...+ ...+.+. ..|+.+ -+.++++++|+
T Consensus 330 ~w~PQ~~iL~h~~v~~fvtH----~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~ 405 (451)
T PLN02410 330 KWAPQKEVLSHPAVGGFWSH----CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGAVERAVK 405 (451)
T ss_pred ccCCHHHHhCCCccCeeeec----CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHH
Confidence 46677788888665 5532 34568999999999999986643 3333333 556554 28899999999
Q ss_pred HHHhCCC
Q 008544 404 KALAEEP 410 (562)
Q Consensus 404 ~ll~~~~ 410 (562)
+++.+++
T Consensus 406 ~lm~~~~ 412 (451)
T PLN02410 406 RLMVEEE 412 (451)
T ss_pred HHHcCCc
Confidence 9998754
No 156
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.71 E-value=0.96 Score=51.14 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=88.1
Q ss_pred CCCCccEEEEEeeccccCCHHH-HHHH---HHHHHHhcC-----CcEEEEEeCCC-C---HHHH----HHHHHh------
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEE-LLGL---LNIYHKELA-----GLEMDLYGNGE-D---FDQI----QRAAKK------ 325 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~-ll~a---~~~l~~~~~-----~~~l~ivG~g~-~---~~~l----~~~~~~------ 325 (562)
+.++....+++-|+..+|...+ ++.. +.+++. .| ..++++.|.-. . .+.+ .+.++.
T Consensus 526 ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 526 VDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKE-NPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred cCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHh-CCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChh
Confidence 3556777888999999999888 5555 444443 33 26677777621 1 1222 222221
Q ss_pred cC--CeeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CH
Q 008544 326 LK--LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GR 395 (562)
Q Consensus 326 l~--l~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~ 395 (562)
.+ +++.|+..++ -.+.++..+|+-...|+ .|..|+.-+=+|.-|.+.++|--|. .|+.+. +.|+|++. +.
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~ 684 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTA 684 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCH
Confidence 11 1344555533 33488899999999885 8999999999999999999997775 666665 78999996 55
Q ss_pred HHHHH
Q 008544 396 NGFVE 400 (562)
Q Consensus 396 ~~la~ 400 (562)
++..+
T Consensus 685 ~ev~~ 689 (797)
T cd04300 685 EEVEA 689 (797)
T ss_pred HHHHH
Confidence 55543
No 157
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=90.66 E-value=2.5 Score=41.87 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhh--h------chHHHHHHHHHHHHHHHHH--hccEE
Q 008544 161 EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKRE--K------NDRLQAFLLEFVNSWLARV--HCHKV 229 (562)
Q Consensus 161 ~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~--~ad~v 229 (562)
+.||+|+.+.-..+++ +...+.+.+ |.+.+=|..|..-...+ . ...++..+.+.+.....-. .||.|
T Consensus 172 ~advyHsvstGyAgl~--g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I 249 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLL--GALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRI 249 (268)
T ss_pred CCCEEecCCccHHHHH--HHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCee
Confidence 5699999988777666 455555555 99999998864322111 1 1234444444443332222 49999
Q ss_pred EEcChhhhcc
Q 008544 230 IRLSAATQEY 239 (562)
Q Consensus 230 i~~S~~~~~~ 239 (562)
++.++..++.
T Consensus 250 ~~l~~~n~~~ 259 (268)
T PF11997_consen 250 TPLYEYNREW 259 (268)
T ss_pred cccchhhHHH
Confidence 9999876653
No 158
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.52 E-value=3.1 Score=42.56 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=61.8
Q ss_pred cEEEEEee-ccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCC---ChHHHHhhcC
Q 008544 274 KGAYYIGR-MVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRD---HADPIFHDYK 347 (562)
Q Consensus 274 ~~il~vGr-~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~---~~~~l~~~ad 347 (562)
.+++..|. ..+.|.+ +...+.+..+.+. +.++++.|..++.+..++..+..+..+.-+.+.. +...+++.||
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 34456555 3356654 4667777666543 5889999987666666665554432222134433 4448889999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
++|..-. ..+-=|.|.|+|+|+--.+.
T Consensus 254 l~I~~DS-----Gp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 254 AVVTNDS-----GLMHVAAALNRPLVALYGST 280 (334)
T ss_pred EEEeeCC-----HHHHHHHHcCCCEEEEECCC
Confidence 9997642 24455779999999874443
No 159
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=90.04 E-value=3.6 Score=45.98 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=77.1
Q ss_pred CCCCccEEEEEeeccccCCHHH-H---HHHHHHHHHhc----CCcEEEEEeCC-CCH---HHHHHHHHh----------c
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEE-L---LGLLNIYHKEL----AGLEMDLYGNG-EDF---DQIQRAAKK----------L 326 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~-l---l~a~~~l~~~~----~~~~l~ivG~g-~~~---~~l~~~~~~----------l 326 (562)
+.++....+++-|+..+|...+ + ++.+.++++.- ..+++++.|.- |.. +++-+.+.+ .
T Consensus 440 ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v 519 (713)
T PF00343_consen 440 LDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEV 519 (713)
T ss_dssp --TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTT
T ss_pred CCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhh
Confidence 3455667889999999999887 3 34455555431 23678888872 221 223222221 1
Q ss_pred CC--eeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHH
Q 008544 327 KL--VVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRN 396 (562)
Q Consensus 327 ~l--~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~ 396 (562)
+. ++.|+..++ -.+.++..+||-.+.|+ .|..|+.-+=||.-|.+.+++--|. -|+.+. ..|.|++. +.+
T Consensus 520 ~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ 599 (713)
T PF00343_consen 520 GDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAE 599 (713)
T ss_dssp CCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHH
T ss_pred ccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHH
Confidence 11 344555543 22378889999999885 8999999999999999999997776 666543 46788885 555
Q ss_pred HHH
Q 008544 397 GFV 399 (562)
Q Consensus 397 ~la 399 (562)
++.
T Consensus 600 ev~ 602 (713)
T PF00343_consen 600 EVE 602 (713)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 160
>PLN02562 UDP-glycosyltransferase
Probab=89.99 E-value=3.9 Score=43.85 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=51.2
Q ss_pred CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEeeC--CHHHHHHHHHHHH
Q 008544 335 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD--GRNGFVEATLKAL 406 (562)
Q Consensus 335 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~~--d~~~la~~i~~ll 406 (562)
+..+..+++...++..+-+. +--.+++||+++|+|+|+-..-+ ...+.+ -..|+-+. +.++++++|++++
T Consensus 334 ~w~PQ~~iL~h~~v~~fvtH--~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l 411 (448)
T PLN02562 334 SWAPQLEVLKHQAVGCYLTH--CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVM 411 (448)
T ss_pred ecCCHHHHhCCCccceEEec--CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHh
Confidence 56677789988775444333 33568999999999999986643 333433 24455442 8899999999999
Q ss_pred hCC
Q 008544 407 AEE 409 (562)
Q Consensus 407 ~~~ 409 (562)
.++
T Consensus 412 ~~~ 414 (448)
T PLN02562 412 EDS 414 (448)
T ss_pred CCH
Confidence 764
No 161
>PLN03004 UDP-glycosyltransferase
Probab=89.45 E-value=2.6 Score=45.15 Aligned_cols=74 Identities=9% Similarity=-0.021 Sum_probs=51.9
Q ss_pred eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEee-------CCHHHHH
Q 008544 333 YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-------DGRNGFV 399 (562)
Q Consensus 333 ~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~-------~d~~~la 399 (562)
..+..+..++++.+++..+-+. +--++++||+++|+|+|+-...+ ...+.+ -..|... -+.++++
T Consensus 338 v~~W~PQ~~iL~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~ 415 (451)
T PLN03004 338 VKSWAPQVPVLNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVE 415 (451)
T ss_pred EEeeCCHHHHhCCCccceEecc--CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHHH
Confidence 3445667789999998444443 33568999999999999986643 334433 2555543 1778999
Q ss_pred HHHHHHHhC
Q 008544 400 EATLKALAE 408 (562)
Q Consensus 400 ~~i~~ll~~ 408 (562)
++|++++.+
T Consensus 416 ~av~~vm~~ 424 (451)
T PLN03004 416 KRVQEIIGE 424 (451)
T ss_pred HHHHHHhcC
Confidence 999999975
No 162
>PLN02173 UDP-glucosyl transferase family protein
Probab=88.70 E-value=3.9 Score=43.78 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=52.0
Q ss_pred CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEeeC--------CHHHHHH
Q 008544 335 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD--------GRNGFVE 400 (562)
Q Consensus 335 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~~--------d~~~la~ 400 (562)
+.....++++..++..+-|. +--++++||+++|+|+|+-..-+ ...+.+. ..|.-+. +.+++.+
T Consensus 323 ~W~PQ~~iL~H~~v~~FvtH--cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~ 400 (449)
T PLN02173 323 KWSPQLQVLSNKAIGCFMTH--CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEF 400 (449)
T ss_pred CCCCHHHHhCCCccceEEec--CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHH
Confidence 55667789998875554443 44678999999999999986543 3444432 3444321 6799999
Q ss_pred HHHHHHhCCC
Q 008544 401 ATLKALAEEP 410 (562)
Q Consensus 401 ~i~~ll~~~~ 410 (562)
++.+++.+++
T Consensus 401 av~~vm~~~~ 410 (449)
T PLN02173 401 SIKEVMEGEK 410 (449)
T ss_pred HHHHHhcCCh
Confidence 9999998654
No 163
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=88.63 E-value=2.2 Score=47.78 Aligned_cols=123 Identities=14% Similarity=0.058 Sum_probs=84.2
Q ss_pred CCccEEEEEeeccccCCHHHHHHHHHHHHHh-----cCCcEEEEEeCC-CC---H----HHHHHHHHhcC--CeeEEeCC
Q 008544 271 AFTKGAYYIGRMVWSKGYEELLGLLNIYHKE-----LAGLEMDLYGNG-ED---F----DQIQRAAKKLK--LVVRVYPG 335 (562)
Q Consensus 271 ~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~-----~~~~~l~ivG~g-~~---~----~~l~~~~~~l~--l~~~~~~~ 335 (562)
++...++++-|+..+|.....+.-+..+.+. .|.+.+++.|.- |. . ..+...++..+ +++.|+.+
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 4566788888999999877655444433332 244666666652 11 1 22233333322 34556666
Q ss_pred CC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-ccccc--cCCceEeeC
Q 008544 336 RD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD 393 (562)
Q Consensus 336 ~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~--~~~~g~~~~ 393 (562)
++ -.+.++..+|+-.+.|+ .|..|+.-+=||.-|.+-|+|--|. -|+.+ ++.|||++.
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG 629 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeC
Confidence 43 23378889999998875 8999999999999999999997776 67775 889999985
No 164
>PLN00164 glucosyltransferase; Provisional
Probab=88.50 E-value=11 Score=40.83 Aligned_cols=76 Identities=9% Similarity=-0.075 Sum_probs=51.3
Q ss_pred eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccc-ccCCceEeeC---------CHHH
Q 008544 333 YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD---------GRNG 397 (562)
Q Consensus 333 ~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v-~~~~~g~~~~---------d~~~ 397 (562)
..+..+..+++...++..+-+. +--.+++||+++|+|+|+-..-+ ...+ +.-..|+..+ +.++
T Consensus 343 v~~w~PQ~~iL~h~~vg~fvtH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~ 420 (480)
T PLN00164 343 WPTWAPQKEILAHAAVGGFVTH--CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAE 420 (480)
T ss_pred EeecCCHHHHhcCcccCeEEee--cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHH
Confidence 4456677788998885433332 33458999999999999986543 2233 3334455431 5789
Q ss_pred HHHHHHHHHhCCC
Q 008544 398 FVEATLKALAEEP 410 (562)
Q Consensus 398 la~~i~~ll~~~~ 410 (562)
+.++|.+++.++.
T Consensus 421 l~~av~~vm~~~~ 433 (480)
T PLN00164 421 LERAVRSLMGGGE 433 (480)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999998753
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=88.44 E-value=2.2 Score=41.41 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=54.6
Q ss_pred ccEEEEEeeccccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChH---HHHhh
Q 008544 273 TKGAYYIGRMVWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHAD---PIFHD 345 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~---~l~~~ 345 (562)
..+++..|.-.+.|.+. ...+.+..+.+.. ..++++|...+ .+..++..+.....+.-+.+..++. .+++.
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 45677777766777754 4667777666553 78899998665 2333334333332233344434444 78889
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+|++|.+- ...+-=|.|.|+|+|+--.+
T Consensus 184 a~~~I~~D-----tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 184 ADLVIGND-----TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp SSEEEEES-----SHHHHHHHHTT--EEEEESS
T ss_pred CCEEEecC-----ChHHHHHHHHhCCEEEEecC
Confidence 99999774 22456678999999998443
No 166
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=88.06 E-value=29 Score=34.22 Aligned_cols=292 Identities=18% Similarity=0.203 Sum_probs=128.2
Q ss_pred ccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCcccccccccchhc
Q 008544 64 TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDTRFYPGKFAAD 143 (562)
Q Consensus 64 ~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~r~~~~ 143 (562)
.|+..+..+.-++.-+.| |+++++... .-.|..++. +-...+.+..+...
T Consensus 1 CGVTr~a~e~~~wf~KNg-~~~~i~~a~------------e~sftR~ds-------------H~~~~~si~k~~~~---- 50 (355)
T PF11440_consen 1 CGVTRNALEMRDWFDKNG-VEFTIVSAD------------EKSFTRPDS-------------HDSKSFSIPKYLAK---- 50 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT--EEEEEEET------------SS--TTTTS-------------SS-TTTEEEE-TTT----
T ss_pred CCccccHHHHHHHHHhcC-CeeEEEEec------------ccccCCccc-------------cccceeeeehhhHH----
Confidence 366677777878888888 999999761 111222221 11111333322110
Q ss_pred cchhhhHHhHHhhcCcCCCcEEEecCCchhhhh----hchHHHHhhcC---CEEEEEcCCcHHHHhhhhchHHHHHHHHH
Q 008544 144 KKSILAVGDITEIIPDEEADIAVLEEPEHLTWF----HHGKRWKAKFR---FVVGIVHTNYLEYVKREKNDRLQAFLLEF 216 (562)
Q Consensus 144 ~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~----~~~~~~~~~~~---~vi~~~h~~~~~~~~~~~~~~~~~~~~~~ 216 (562)
-...+.+.+. ++||+++.+.+....- -....+.++.+ .+|...|+...-...+ +. .
T Consensus 51 -----e~de~v~~vN--~yDI~m~nSvPa~~vqE~~iNnY~kii~~Ik~~ik~V~~~Hdh~~lsI~r--n~--------~ 113 (355)
T PF11440_consen 51 -----EYDETVKKVN--DYDIVMFNSVPATKVQEAIINNYEKIIKKIKPSIKVVGFMHDHNKLSIDR--NP--------Y 113 (355)
T ss_dssp -----HHHHHHHHHT--SSSEEEEEE--BTTS-HHHHHHHHHHHHCS-TTSEEEEEE---SHHHHTT--BS--------S
T ss_pred -----HHHHHHHHhh--ccCEEEEecccCchHHHHHHHHHHHHHHhccccceeEEEeeccceeeccc--cc--------c
Confidence 0112333333 6999988764332210 01133555555 3578888663322221 11 1
Q ss_pred HHHHHHHHhccEEEEcChhhh-------c-cCCCcccccccc--CC---CCcCcchhhhHHhhcCCCCCccEE---EEEe
Q 008544 217 VNSWLARVHCHKVIRLSAATQ-------E-YPNSIVCNVHGV--NP---KFLEIGEKKMEQQQNGNKAFTKGA---YYIG 280 (562)
Q Consensus 217 ~~~~~~~~~ad~vi~~S~~~~-------~-~~~~~~~~v~GV--d~---~~~~~~~~~~~~~~~~~~~~~~~i---l~vG 280 (562)
+...+.+ ||.|++.|...- + +|.+ .....-+ -+ ++-+|.+-..-+.........+.. +|+|
T Consensus 114 le~~m~~--~DvIfshs~~g~f~kv~m~~l~Ps~-~~l~~~i~~~p~v~nfqpp~~i~~~Rstywkd~se~nmnv~~yig 190 (355)
T PF11440_consen 114 LEGTMNE--MDVIFSHSDNGWFSKVLMKELLPSK-VSLFDRIKKFPMVFNFQPPMDINKYRSTYWKDVSEKNMNVNRYIG 190 (355)
T ss_dssp HHHHHHH---SEEEES-TTSHHHHTHHHHHS-SS---SSS-------EEE----B-HHHHHHHH---GGGSEEEEEEEE-
T ss_pred HHHHHHh--hcEEEeccccchHHHHHHHhhcccc-CchhhhhhhcceeeecCCcccHHHHHHHHhhhhHhhhcccceeee
Confidence 2334445 599999884321 2 2332 1111100 01 111111111122222222223333 6999
Q ss_pred eccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe-------------------eEEeCCCCChH-
Q 008544 281 RMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV-------------------VRVYPGRDHAD- 340 (562)
Q Consensus 281 r~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~-------------------~~~~~~~~~~~- 340 (562)
|..-.||+..+++.-++..+. ++++-++-|-....+.+ .+.+.+.. +.+++.+...+
T Consensus 191 R~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~--~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~ 267 (355)
T PF11440_consen 191 RQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIERSPAKI--SIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEG 267 (355)
T ss_dssp -SSGGG-HHHHHHHHHHTTTT-TT-EEEEE---SSTHHH--HHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHHH
T ss_pred eeeeecCcHHHhhhHHHhcCC-cchhHHhhhhhcCCcee--eeecCCcccccCccccccCcccCCCCcceecchhhhHHH
Confidence 999999999999999887655 78888888863332211 12222222 44556654444
Q ss_pred -HHHhhcCEEEEcc------CCCCCcHHHHHHHHcCC-cEEeeCCCC-cc------ccccCCceEee---CCHHHHHHHH
Q 008544 341 -PIFHDYKVFLNPS------TTDVVCTATAEALAMGK-IVVCANHPS-ND------FFKQFPNCRTY---DGRNGFVEAT 402 (562)
Q Consensus 341 -~l~~~adv~v~pS------~~E~~~~~~lEAma~G~-PVI~t~~~~-~e------~v~~~~~g~~~---~d~~~la~~i 402 (562)
+.|+..-...--+ ..+..-.+-+|..|||. ||.-...|. .. -..+-+.|.++ +|.++-.+.|
T Consensus 268 ~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T~ekl 347 (355)
T PF11440_consen 268 LERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLESTVEKL 347 (355)
T ss_dssp HHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHHHHHH
T ss_pred HHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHHHHHH
Confidence 4555444433332 13457788999999997 555544432 22 12233445554 3777777777
Q ss_pred HHHHhC
Q 008544 403 LKALAE 408 (562)
Q Consensus 403 ~~ll~~ 408 (562)
.++.++
T Consensus 348 ~E~a~~ 353 (355)
T PF11440_consen 348 IEVANN 353 (355)
T ss_dssp HHHHT-
T ss_pred HHHhcc
Confidence 776654
No 167
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=87.80 E-value=8.7 Score=38.93 Aligned_cols=126 Identities=14% Similarity=0.041 Sum_probs=72.0
Q ss_pred ccEEEEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcC
Q 008544 273 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~ad 347 (562)
..+++..|.-.+.|.+ +...+.+..+.++ +.++++.|++++ .+..++..+..+. ..+.+. ..+...+++.||
T Consensus 180 ~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 180 PYAVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPG-AVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred CEEEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCC
Confidence 4456677755566765 4667777777544 678888754544 3445555444432 233332 233348888999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-c-cccccCCc-eEee-----C-CHHHHHHHHHHHH
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-N-DFFKQFPN-CRTY-----D-GRNGFVEATLKAL 406 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~-e~v~~~~~-g~~~-----~-d~~~la~~i~~ll 406 (562)
++|..- +. .+-=|.|+|+|+|+--.+. + .+-.-+.+ ..+. + ++++..+++.+++
T Consensus 257 l~I~~D---Sg--p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 257 AVVGVD---TG--LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EEEeCC---Ch--HHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 999764 22 3444678899999874433 2 11111111 1121 1 7777877777653
No 168
>PLN03007 UDP-glucosyltransferase family protein
Probab=87.78 E-value=14 Score=40.02 Aligned_cols=75 Identities=13% Similarity=-0.001 Sum_probs=48.7
Q ss_pred CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEe----------e--CCH
Q 008544 334 PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRT----------Y--DGR 395 (562)
Q Consensus 334 ~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~----------~--~d~ 395 (562)
.+..+..+++..+++-.+-+. +--++++||+++|+|+|+-..-+ ...+.+ -..|+- . -+.
T Consensus 350 ~~w~PQ~~iL~h~~v~~fvtH--~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 427 (482)
T PLN03007 350 RGWAPQVLILDHQATGGFVTH--CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISR 427 (482)
T ss_pred ecCCCHHHHhccCccceeeec--CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccH
Confidence 345566789998876333332 33568999999999999986643 222111 012211 1 178
Q ss_pred HHHHHHHHHHHhCCC
Q 008544 396 NGFVEATLKALAEEP 410 (562)
Q Consensus 396 ~~la~~i~~ll~~~~ 410 (562)
+++.+++++++.+++
T Consensus 428 ~~l~~av~~~m~~~~ 442 (482)
T PLN03007 428 EKVEKAVREVIVGEE 442 (482)
T ss_pred HHHHHHHHHHhcCcH
Confidence 899999999998753
No 169
>PLN00414 glycosyltransferase family protein
Probab=87.53 E-value=7.2 Score=41.75 Aligned_cols=132 Identities=7% Similarity=-0.024 Sum_probs=76.0
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEe---CCC----CHHHHHHHHHhcCCeeEEeCCCCChHHHHhh
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYG---NGE----DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 345 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG---~g~----~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~ 345 (562)
..+.+..|.+.. -..+.+.+.+..|....-++-.++-- .+. ..+.+++.++..| .+..+.....+++..
T Consensus 253 sVvyvsfGS~~~-~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g---~vv~~w~PQ~~vL~h 328 (446)
T PLN00414 253 SVVFCAFGTQFF-FEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG---IVWEGWVEQPLILSH 328 (446)
T ss_pred ceEEEeeccccc-CCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC---eEEeccCCHHHHhcC
Confidence 444456666542 23345555555554443333333322 111 1234444444333 234456677789988
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccc-cCCceEee-------CCHHHHHHHHHHHHhCCC
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DGRNGFVEATLKALAEEP 410 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~-~~~~g~~~-------~d~~~la~~i~~ll~~~~ 410 (562)
..+..+-+. +--++++||+++|+|+|+-...+ ...+. .-..|..+ -+.+++.+++++++.++.
T Consensus 329 ~~v~~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 329 PSVGCFVNH--CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred CccceEEec--CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCCh
Confidence 754333232 34578999999999999986643 33442 33555544 278899999999998653
No 170
>PLN02208 glycosyltransferase family protein
Probab=87.45 E-value=12 Score=40.10 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=75.6
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHH-HHhcCCcEEEEEeC-C--CC----HHHHHHHHHhcCCeeEEeCCCCChHHHHh
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIY-HKELAGLEMDLYGN-G--ED----FDQIQRAAKKLKLVVRVYPGRDHADPIFH 344 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l-~~~~~~~~l~ivG~-g--~~----~~~l~~~~~~l~l~~~~~~~~~~~~~l~~ 344 (562)
..+.+..|.+.. -..+.+.+.+..+ ....| +.+++--. + +. .+.+++.++..|+ +..+.....++++
T Consensus 252 sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~---~v~~W~PQ~~iL~ 326 (442)
T PLN02208 252 SVVFCSLGSQII-LEKDQFQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGV---VWGGWVQQPLILD 326 (442)
T ss_pred cEEEEecccccc-CCHHHHHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCc---EeeccCCHHHHhc
Confidence 445556666542 2445566665554 33333 44444311 1 11 2333344332232 2345566678898
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEeeC-------CHHHHHHHHHHHHhCCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD-------GRNGFVEATLKALAEEP 410 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~~-------d~~~la~~i~~ll~~~~ 410 (562)
..++..+-|. +--++++||+++|+|+|+-..-+ ...+.+ -..|..++ +.+++.++|.++++++.
T Consensus 327 H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~ 403 (442)
T PLN02208 327 HPSIGCFVNH--CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDS 403 (442)
T ss_pred CCccCeEEcc--CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCc
Confidence 8876555443 34568999999999999986643 222233 34455441 67899999999998763
No 171
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=87.32 E-value=1.5 Score=49.35 Aligned_cols=131 Identities=16% Similarity=0.087 Sum_probs=86.9
Q ss_pred CCCccEEEEEeeccccCCHHH-HHHHHHHHHH--hcCC-----cEEEEEeCCC-C---HHHH----HHHHHhcC------
Q 008544 270 KAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHK--ELAG-----LEMDLYGNGE-D---FDQI----QRAAKKLK------ 327 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~--~~~~-----~~l~ivG~g~-~---~~~l----~~~~~~l~------ 327 (562)
.++...++++-|+..+|...+ ++..+..+.+ +.|+ .++++.|.-. . .+.+ .+.++..+
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 455566677789999999887 6655444432 2333 6777777621 1 1222 22332221
Q ss_pred --CeeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHHH
Q 008544 328 --LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 397 (562)
Q Consensus 328 --l~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~~ 397 (562)
+++.|+..++ -.+.++..+|+-...|+ .|..|+.=+=+|.-|.+.+.|--|. .|+.++ +.|+|++. +.++
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~~e 685 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTVEQ 685 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCHHH
Confidence 1344555533 33488899999999886 8999999999999999999997765 666654 78999985 5555
Q ss_pred HHH
Q 008544 398 FVE 400 (562)
Q Consensus 398 la~ 400 (562)
+.+
T Consensus 686 v~~ 688 (798)
T PRK14985 686 VKA 688 (798)
T ss_pred HHH
Confidence 543
No 172
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=86.04 E-value=1.7 Score=48.97 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=87.8
Q ss_pred CCCccEEEEEeeccccCCHHH-HHHHHH---HHHHhcC-----CcEEEEEeCCC---C-HHHHHHHHHhcC---------
Q 008544 270 KAFTKGAYYIGRMVWSKGYEE-LLGLLN---IYHKELA-----GLEMDLYGNGE---D-FDQIQRAAKKLK--------- 327 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~-ll~a~~---~l~~~~~-----~~~l~ivG~g~---~-~~~l~~~~~~l~--------- 327 (562)
.++....+++-|+..+|...+ ++..+. +++. .| ..++++.|.-. . .+.+-+++....
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v 602 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKE-DPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAV 602 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHh-CCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhh
Confidence 455666778889999999887 555544 4433 23 35777777621 1 122222222211
Q ss_pred ---CeeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHH
Q 008544 328 ---LVVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRN 396 (562)
Q Consensus 328 ---l~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~ 396 (562)
+++.|+..++ -.+.++..+|+-...|+ .|..|+.-+=+|.-|.+.+.|--|. .|+.++ +.|+|++. +.+
T Consensus 603 ~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ 682 (794)
T TIGR02093 603 GDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVE 682 (794)
T ss_pred CCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHH
Confidence 1344555533 33488899999999886 8999999999999999999997765 666665 78999986 666
Q ss_pred HHHHH
Q 008544 397 GFVEA 401 (562)
Q Consensus 397 ~la~~ 401 (562)
+..+.
T Consensus 683 ev~~~ 687 (794)
T TIGR02093 683 EVEAL 687 (794)
T ss_pred HHHHH
Confidence 65543
No 173
>PLN02764 glycosyltransferase family protein
Probab=85.88 E-value=19 Score=38.60 Aligned_cols=132 Identities=11% Similarity=-0.010 Sum_probs=73.6
Q ss_pred CccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEe-CCC-C-----HHHHHHHHHhcCCeeEEeCCCCChHHHHh
Q 008544 272 FTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYG-NGE-D-----FDQIQRAAKKLKLVVRVYPGRDHADPIFH 344 (562)
Q Consensus 272 ~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~-~-----~~~l~~~~~~l~l~~~~~~~~~~~~~l~~ 344 (562)
...+.+..|.+.. -..+.+.+.+..|....-.+.+++-- .+. + .+.+++..+..| .+..+..+..++++
T Consensus 257 ~sVvyvsfGS~~~-~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG---~v~~~W~PQ~~vL~ 332 (453)
T PLN02764 257 DSVVFCALGSQVI-LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG---VVWGGWVQQPLILS 332 (453)
T ss_pred CceEEEeeccccc-CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC---cEEeCCCCHHHHhc
Confidence 3445556676532 23345555555544443345444431 111 1 122222222222 12335666778888
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEee-------CCHHHHHHHHHHHHhCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-------DGRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~-------~d~~~la~~i~~ll~~~ 409 (562)
...+..+-+. +--++++||+++|+|+|+-...+ ...+.+ -..|+.. -+.+++.++++++++++
T Consensus 333 h~~v~~FvtH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~ 408 (453)
T PLN02764 333 HPSVGCFVSH--CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRD 408 (453)
T ss_pred CcccCeEEec--CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCC
Confidence 7655333332 44678999999999999987653 344433 2344432 17789999999999875
No 174
>PLN02210 UDP-glucosyl transferase
Probab=85.79 E-value=12 Score=40.32 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=72.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE-EeCC---CCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNG---EDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 348 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g---~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv 348 (562)
..+.+..|.+... ..+.+-+.+..+... +.+|++ ++.. .+.+.+++.... + +..+ .+..+..++++.+++
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~--~~~flw~~~~~~~~~~~~~~~~~~~~-~-~g~v-~~w~PQ~~iL~h~~v 343 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNR--GVPFLWVIRPKEKAQNVQVLQEMVKE-G-QGVV-LEWSPQEKILSHMAI 343 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhC--CCCEEEEEeCCccccchhhHHhhccC-C-CeEE-EecCCHHHHhcCcCc
Confidence 3455566775432 334444444444433 344444 3421 122333333211 1 1222 356667789998884
Q ss_pred EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEee--------CCHHHHHHHHHHHHhCCC
Q 008544 349 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY--------DGRNGFVEATLKALAEEP 410 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~--------~d~~~la~~i~~ll~~~~ 410 (562)
..+-+. +--++++||+++|+|+|+-...+ ...+.+ -..|..+ -+.+++.+++++++.++.
T Consensus 344 g~FitH--~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 344 SCFVTH--CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred CeEEee--CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 333332 22358999999999999987654 333433 3455443 177899999999997654
No 175
>PLN02555 limonoid glucosyltransferase
Probab=85.79 E-value=7.6 Score=41.97 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=50.8
Q ss_pred CCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEee------C---CHHH
Q 008544 335 GRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY------D---GRNG 397 (562)
Q Consensus 335 ~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~------~---d~~~ 397 (562)
+..+..++++. +.+||.- +--.+++||+.+|+|+|+-..-+ ...+.+. ..|+.. . +.++
T Consensus 343 ~W~PQ~~iL~H~~v~~FvtH----~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~ 418 (480)
T PLN02555 343 QWCPQEKVLAHPSVACFVTH----CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREE 418 (480)
T ss_pred ecCCHHHHhCCCccCeEEec----CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHH
Confidence 34556678854 4555532 34568999999999999986643 3333333 455443 1 5789
Q ss_pred HHHHHHHHHhCCCC-CccHHH
Q 008544 398 FVEATLKALAEEPA-QPTDAQ 417 (562)
Q Consensus 398 la~~i~~ll~~~~~-~l~~~a 417 (562)
+.++|.+++.+++. .|++++
T Consensus 419 v~~~v~~vm~~~~g~~~r~ra 439 (480)
T PLN02555 419 VAECLLEATVGEKAAELKQNA 439 (480)
T ss_pred HHHHHHHHhcCchHHHHHHHH
Confidence 99999999976532 444433
No 176
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=85.79 E-value=13 Score=39.78 Aligned_cols=80 Identities=11% Similarity=0.045 Sum_probs=52.4
Q ss_pred CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEee-------CCHHHHHHH
Q 008544 335 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY-------DGRNGFVEA 401 (562)
Q Consensus 335 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~-------~d~~~la~~ 401 (562)
+..+..++++..++-.+-+. +--++++||+.+|+|+|+-...+ ...+.+. ..|+-. -+.+++.++
T Consensus 333 ~W~PQ~~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~a 410 (455)
T PLN02152 333 SWCSQIEVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRC 410 (455)
T ss_pred eeCCHHHHhCCcccceEEee--CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHH
Confidence 45566789998886554443 33568999999999999986643 2333331 233332 167899999
Q ss_pred HHHHHhCCCCCccHH
Q 008544 402 TLKALAEEPAQPTDA 416 (562)
Q Consensus 402 i~~ll~~~~~~l~~~ 416 (562)
+.++++++...++++
T Consensus 411 v~~vm~~~~~~~r~~ 425 (455)
T PLN02152 411 LEAVMEEKSVELRES 425 (455)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999997554344433
No 177
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=84.62 E-value=9.7 Score=38.20 Aligned_cols=142 Identities=15% Similarity=0.058 Sum_probs=74.9
Q ss_pred ccEEEEcChhhhccCCCcccccc-ccCCCCcCcchhhhHHhhcCCCCCccEEEEEeecc---ccCCHHHHHHHHHHHHHh
Q 008544 226 CHKVIRLSAATQEYPNSIVCNVH-GVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMV---WSKGYEELLGLLNIYHKE 301 (562)
Q Consensus 226 ad~vi~~S~~~~~~~~~~~~~v~-GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~ 301 (562)
+|.+.+--+...++.++...++. +-|+.+.-+.... + .......+.|++.-+-. ..+..+.+.+++..+.++
T Consensus 128 ~~~i~vRD~~S~~~l~~~g~~i~~~~D~a~~l~~~~~--~--~~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~ 203 (298)
T TIGR03609 128 CRAISVRDAASYRLLKRLGIPAELAADPVWLLPPEPW--P--GGEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD 203 (298)
T ss_pred CCEEEEeCHHHHHHHHHhCCCceEeCChhhhCCCCcc--c--ccccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh
Confidence 68887766666665443222232 3455443221110 0 01111234444433321 112355677777777655
Q ss_pred cCCcEEEEEeC--CCCHHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 302 LAGLEMDLYGN--GEDFDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 302 ~~~~~l~ivG~--g~~~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
. +.+++++.. ..|.+..++..+.+.....++.. ..+..++++++|++|-...+ .++=|+.+|+|+|+-..
T Consensus 204 ~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 204 T-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----ALILAAAAGVPFVALSY 277 (298)
T ss_pred h-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HHHHHHHcCCCEEEeec
Confidence 3 566655553 23445455555554333333322 22333778899988877655 67889999999998754
No 178
>PLN02167 UDP-glycosyltransferase family protein
Probab=83.62 E-value=16 Score=39.41 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=48.0
Q ss_pred CCCChHHHHhhcC--EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC----cc--ccccCCceEee-----------CCH
Q 008544 335 GRDHADPIFHDYK--VFLNPSTTDVVCTATAEALAMGKIVVCANHPS----ND--FFKQFPNCRTY-----------DGR 395 (562)
Q Consensus 335 ~~~~~~~l~~~ad--v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~----~e--~v~~~~~g~~~-----------~d~ 395 (562)
+..+..++++... .||.- +--++++||+++|+|+|+-...+ +. .++.-..|..+ -+.
T Consensus 346 ~w~PQ~~iL~h~~vg~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~ 421 (475)
T PLN02167 346 GWAPQVEILAHKAIGGFVSH----CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKA 421 (475)
T ss_pred ccCCHHHHhcCcccCeEEee----CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccH
Confidence 5566778888755 55532 33458999999999999986643 22 23333445433 167
Q ss_pred HHHHHHHHHHHhCC
Q 008544 396 NGFVEATLKALAEE 409 (562)
Q Consensus 396 ~~la~~i~~ll~~~ 409 (562)
++++++|.+++.++
T Consensus 422 ~~l~~av~~~m~~~ 435 (475)
T PLN02167 422 DEIAGAVRSLMDGE 435 (475)
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999764
No 179
>PLN02554 UDP-glycosyltransferase family protein
Probab=82.09 E-value=18 Score=39.12 Aligned_cols=69 Identities=9% Similarity=0.025 Sum_probs=46.2
Q ss_pred CCCChHHHHhhcC--EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC----cc--ccccCCceEee--------------
Q 008544 335 GRDHADPIFHDYK--VFLNPSTTDVVCTATAEALAMGKIVVCANHPS----ND--FFKQFPNCRTY-------------- 392 (562)
Q Consensus 335 ~~~~~~~l~~~ad--v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~----~e--~v~~~~~g~~~-------------- 392 (562)
+..+..++++... +|| +. +--.+++||+.+|+|+|+-...+ +. .++.-..|..+
T Consensus 348 ~W~PQ~~iL~H~~v~~Fv--tH--~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 348 GWAPQVAVLAKPAIGGFV--TH--CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred eeCCHHHHhCCcccCccc--cc--CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccC
Confidence 4556677885444 455 22 33568999999999999986643 22 23333444432
Q ss_pred C-CHHHHHHHHHHHHh
Q 008544 393 D-GRNGFVEATLKALA 407 (562)
Q Consensus 393 ~-d~~~la~~i~~ll~ 407 (562)
. +.+++.++|++++.
T Consensus 424 ~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 424 TVTAEEIERGIRCLME 439 (481)
T ss_pred eEcHHHHHHHHHHHhc
Confidence 1 77899999999996
No 180
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=82.08 E-value=29 Score=37.56 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccc-cCCceEee-------CCHHHH
Q 008544 334 PGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DGRNGF 398 (562)
Q Consensus 334 ~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~-~~~~g~~~-------~d~~~l 398 (562)
.+..+..+++.. .++||.- +--.+++||+++|+|+|+-...+ ...+. .-..|... -+.+++
T Consensus 348 ~~w~PQ~~vL~h~~v~~fvtH----~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v 423 (477)
T PLN02863 348 RGWAPQVAILSHRAVGAFLTH----CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDEL 423 (477)
T ss_pred cCCCCHHHHhcCCCcCeEEec----CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHH
Confidence 345556778886 4566632 34568999999999999986643 23332 22445433 167889
Q ss_pred HHHHHHHHh
Q 008544 399 VEATLKALA 407 (562)
Q Consensus 399 a~~i~~ll~ 407 (562)
.+++.+++.
T Consensus 424 ~~~v~~~m~ 432 (477)
T PLN02863 424 ARVFMESVS 432 (477)
T ss_pred HHHHHHHhh
Confidence 999998884
No 181
>PLN02207 UDP-glycosyltransferase
Probab=81.19 E-value=31 Score=37.20 Aligned_cols=72 Identities=14% Similarity=-0.027 Sum_probs=47.6
Q ss_pred CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccccc-CCceEee-----------CCHHH
Q 008544 335 GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-----------DGRNG 397 (562)
Q Consensus 335 ~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~-~~~g~~~-----------~d~~~ 397 (562)
+..+..++++...+..+-|. +--++++||+++|+|+|+-...+ ...+.+ -..|+-+ -+.++
T Consensus 338 ~W~PQ~~IL~H~~vg~FvTH--~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~ 415 (468)
T PLN02207 338 GWSPQVEILAHKAVGGFVSH--CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANE 415 (468)
T ss_pred EeCCHHHHhcccccceeeec--CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHH
Confidence 45666778887766433333 23457899999999999986654 232222 3444411 17789
Q ss_pred HHHHHHHHHhC
Q 008544 398 FVEATLKALAE 408 (562)
Q Consensus 398 la~~i~~ll~~ 408 (562)
+.++|++++.+
T Consensus 416 i~~av~~vm~~ 426 (468)
T PLN02207 416 IETAIRCVMNK 426 (468)
T ss_pred HHHHHHHHHhc
Confidence 99999999963
No 182
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=81.01 E-value=29 Score=35.23 Aligned_cols=95 Identities=16% Similarity=0.233 Sum_probs=55.2
Q ss_pred EEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEE-eCCCCHHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcCEEEE
Q 008544 277 YYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYKVFLN 351 (562)
Q Consensus 277 l~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~adv~v~ 351 (562)
+..|.-.+.|.+ +...+.+..+.++ +.++++. |...+.+..++..+... .+.+.+. ..+...+++.||++|.
T Consensus 183 ~~~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I~ 259 (322)
T PRK10964 183 FLHATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVVS 259 (322)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEEe
Confidence 344443345544 3666777666543 6778776 54334444444443322 2333332 2233388889999997
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
... .++-=|.|+|+|+|+-=.+.
T Consensus 260 nDS-----Gp~HlA~A~g~p~valfGpt 282 (322)
T PRK10964 260 VDT-----GLSHLTAALDRPNITLYGPT 282 (322)
T ss_pred cCC-----cHHHHHHHhCCCEEEEECCC
Confidence 642 24555788999999985543
No 183
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=79.93 E-value=13 Score=38.21 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=60.2
Q ss_pred cEEEEEeec-cccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe----eEEeCCCCCh---HHHH
Q 008544 274 KGAYYIGRM-VWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV----VRVYPGRDHA---DPIF 343 (562)
Q Consensus 274 ~~il~vGr~-~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~----~~~~~~~~~~---~~l~ 343 (562)
.+++..|.- .+.|.+ +...+.+..+.+ .++++++.|+.++.+..++..+..+.. +..+.+..++ ..++
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 345566653 356654 356666666653 268899999766666556655544321 1224443334 4788
Q ss_pred hhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 344 HDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 344 ~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+.||++|..-. - .+-=|.|.|+|+|+--.+
T Consensus 260 ~~a~l~I~nDT---G--p~HlAaA~g~P~valfGp 289 (348)
T PRK10916 260 AACKAIVTNDS---G--LMHVAAALNRPLVALYGP 289 (348)
T ss_pred HhCCEEEecCC---h--HHHHHHHhCCCEEEEECC
Confidence 99999997642 2 455578899999987444
No 184
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=77.97 E-value=23 Score=36.35 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=59.0
Q ss_pred ccEEEEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCe-eEEeCCCCC---hHHHHh
Q 008544 273 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLV-VRVYPGRDH---ADPIFH 344 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~-~~~~~~~~~---~~~l~~ 344 (562)
..+++..|.-.+.|.+ +...+.+..+.++ +.+++++|...+ .+..++..+..+.. +.-+.+..+ ...+++
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~ 259 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALID 259 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHH
Confidence 3455666654455543 4666666666543 688999986432 23344443333322 222444434 448888
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.||++|..- + ..+-=|.|+|+|+|+--.+
T Consensus 260 ~a~l~Vs~D---S--Gp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 260 HARLFIGVD---S--VPMHMAAALGTPLVALFGP 288 (344)
T ss_pred hCCEEEecC---C--HHHHHHHHcCCCEEEEECC
Confidence 999999764 2 2455578899999987444
No 185
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=77.75 E-value=3 Score=41.82 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=43.4
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC-cEEeeCCCC---ccccccCCceEeeC--CHHHHHHHH
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-IVVCANHPS---NDFFKQFPNCRTYD--GRNGFVEAT 402 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-PVI~t~~~~---~e~v~~~~~g~~~~--d~~~la~~i 402 (562)
+..+.|+.++.++.|.-...+..-+.|||++|| |||.+|.-- .+++.=..-.+.++ +..++.+.|
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL 299 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEIL 299 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHH
Confidence 466889999999998755558889999999997 888876532 55663333334443 444444333
No 186
>PRK05380 pyrG CTP synthetase; Validated
Probab=77.65 E-value=1.1e+02 Score=33.28 Aligned_cols=76 Identities=11% Similarity=0.043 Sum_probs=46.7
Q ss_pred CcEEEEEeCCCC-H-------HHHHHHHHhcCCeeEE--eCC--CC--ChHHHHhhcCEEEEccC-----CCCCcHHHHH
Q 008544 304 GLEMDLYGNGED-F-------DQIQRAAKKLKLVVRV--YPG--RD--HADPIFHDYKVFLNPST-----TDVVCTATAE 364 (562)
Q Consensus 304 ~~~l~ivG~g~~-~-------~~l~~~~~~l~l~~~~--~~~--~~--~~~~l~~~adv~v~pS~-----~E~~~~~~lE 364 (562)
.+++-++|.=-+ . +.++......+..+.+ ... .. +..+.+..+|-+++|-- .++.-..+-+
T Consensus 288 ~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~ 367 (533)
T PRK05380 288 EVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAIRY 367 (533)
T ss_pred ceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccccHHHHHHH
Confidence 588999997221 2 4444444455554443 222 11 24578899998888842 2333345667
Q ss_pred HHHcCCcEEeeCCCC
Q 008544 365 ALAMGKIVVCANHPS 379 (562)
Q Consensus 365 Ama~G~PVI~t~~~~ 379 (562)
|...|+|++..-.|.
T Consensus 368 a~e~~iPiLGIClGm 382 (533)
T PRK05380 368 ARENNIPFLGICLGM 382 (533)
T ss_pred HHHCCCcEEEEchHH
Confidence 778899999887765
No 187
>PLN02327 CTP synthase
Probab=76.87 E-value=1.2e+02 Score=33.20 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=45.6
Q ss_pred CcEEEEEeCCCC--------HHHHHHHHHhcCCeeEE-eCC---CCC------------hHHHHhhcCEEEEccC-----
Q 008544 304 GLEMDLYGNGED--------FDQIQRAAKKLKLVVRV-YPG---RDH------------ADPIFHDYKVFLNPST----- 354 (562)
Q Consensus 304 ~~~l~ivG~g~~--------~~~l~~~~~~l~l~~~~-~~~---~~~------------~~~l~~~adv~v~pS~----- 354 (562)
.+++-++|.=-+ .+.++..+..++.++.+ +.. .++ ..+.+..+|.+++|.-
T Consensus 297 ~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~ 376 (557)
T PLN02327 297 PVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRG 376 (557)
T ss_pred ceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcc
Confidence 588889997211 14555555566665544 222 111 2256889998898853
Q ss_pred CCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 355 TDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 355 ~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.|+.-..+-.|...|+|++..=.|.
T Consensus 377 ~~G~i~ai~~are~~iP~LGIClGm 401 (557)
T PLN02327 377 VEGKILAAKYARENKVPYLGICLGM 401 (557)
T ss_pred cccHHHHHHHHHHcCCCEEEEcHHH
Confidence 2333344555667899999876653
No 188
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=76.49 E-value=27 Score=37.73 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=51.6
Q ss_pred eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccc-ccCCceEeeC------CHHHHHH
Q 008544 333 YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD------GRNGFVE 400 (562)
Q Consensus 333 ~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v-~~~~~g~~~~------d~~~la~ 400 (562)
..+..+..+++....+..+-+. +--++++||+.+|+|+|+-...+ ...+ +.-..|...+ +.+++.+
T Consensus 342 v~~W~PQ~~iL~h~~vg~FitH--~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~ 419 (481)
T PLN02992 342 VPSWAPQAEILAHQAVGGFLTH--CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEA 419 (481)
T ss_pred EeecCCHHHHhCCcccCeeEec--CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHH
Confidence 3445566778888876333332 44568999999999999987653 3333 2334454431 7789999
Q ss_pred HHHHHHhCCC
Q 008544 401 ATLKALAEEP 410 (562)
Q Consensus 401 ~i~~ll~~~~ 410 (562)
+|.+++.++.
T Consensus 420 av~~vm~~~~ 429 (481)
T PLN02992 420 LVRKVMVEEE 429 (481)
T ss_pred HHHHHhcCCc
Confidence 9999998753
No 189
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=75.66 E-value=16 Score=34.25 Aligned_cols=97 Identities=15% Similarity=0.063 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCC--ChHHHHhhcCEEEEccCCCCC
Q 008544 285 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 285 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~--~~~~l~~~adv~v~pS~~E~~ 358 (562)
.|-++.|..|+.-+..-. .-++.++|..+. ...+++.++..|.. .+|.+|.- ....-+..=|+.+..... .-
T Consensus 43 ~kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~-~~ 120 (196)
T TIGR01012 43 RKTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPR-AD 120 (196)
T ss_pred HHHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCc-cc
Confidence 345555666665554433 568999998665 45566666666644 35667621 111224445655554322 23
Q ss_pred cHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 359 CTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
..++.||..+|.|+|+- |..+ ++.+
T Consensus 121 ~~Av~EA~~l~IP~Iai~DTn~dp~~v 147 (196)
T TIGR01012 121 HQALKEASEVGIPIVALCDTDNPLRYV 147 (196)
T ss_pred cHHHHHHHHcCCCEEEEeeCCCCCccC
Confidence 67899999999999998 6555 4444
No 190
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=74.05 E-value=22 Score=29.86 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=53.7
Q ss_pred HHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 299 HKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 299 ~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
.+..++++++-+-+ ++.+..++.+++.+.. .+.+.++++. ..|+.+..+..+.-.-.+.+++..|++|++-.
T Consensus 20 ~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 20 LRSSPDFEVVAVCD-PDPERAEAFAEKYGIP-----VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp HHTTTTEEEEEEEC-SSHHHHHHHHHHTTSE-----EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred HhcCCCcEEEEEEe-CCHHHHHHHHHHhccc-----chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 34446777764443 4566777777888875 4466888888 67877777766666778999999999999986
Q ss_pred CC
Q 008544 377 HP 378 (562)
Q Consensus 377 ~~ 378 (562)
..
T Consensus 94 P~ 95 (120)
T PF01408_consen 94 PL 95 (120)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 191
>PLN02534 UDP-glycosyltransferase
Probab=72.87 E-value=51 Score=35.79 Aligned_cols=72 Identities=8% Similarity=-0.050 Sum_probs=46.5
Q ss_pred CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccc-cCCceEe----------------
Q 008544 334 PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRT---------------- 391 (562)
Q Consensus 334 ~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~-~~~~g~~---------------- 391 (562)
.+.-...+++...++..+-+. +-.++++||+++|+|+|+-...+ ...+. .-..|+-
T Consensus 349 ~~w~pq~~iL~h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~ 426 (491)
T PLN02534 349 KGWAPQVLILSHPAIGGFLTH--CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVG 426 (491)
T ss_pred cCCCCHHHHhcCCccceEEec--CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccccccccccccccc
Confidence 345556788888887333332 44678999999999999986643 12221 1112211
Q ss_pred -eCCHHHHHHHHHHHHh
Q 008544 392 -YDGRNGFVEATLKALA 407 (562)
Q Consensus 392 -~~d~~~la~~i~~ll~ 407 (562)
.-+.+++++++++++.
T Consensus 427 ~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 427 VLVKKDEVEKAVKTLMD 443 (491)
T ss_pred CccCHHHHHHHHHHHhc
Confidence 1267899999999996
No 192
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=71.81 E-value=18 Score=34.06 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCCChH--HHHhhcCEEEEccCCCCC
Q 008544 285 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRDHAD--PIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 285 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~~~~--~l~~~adv~v~pS~~E~~ 358 (562)
.|-+..|..|+.-+... ..-+++++|..+. ...+++.++..+.. .+|.+|.-.-. +-+..=|+.+..... .-
T Consensus 49 ~kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~-~~ 126 (204)
T PRK04020 49 RKTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPR-GD 126 (204)
T ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCc-cc
Confidence 45556666666655543 3567888898665 45667777776654 34666622111 222233544444322 22
Q ss_pred cHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 359 CTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
..++.||.-+|.|+|+- |..+ ++.+
T Consensus 127 ~~AI~EA~kl~IP~IaivDTn~dp~~V 153 (204)
T PRK04020 127 AQAVKEAIEVGIPVVALCDTDNLTSNV 153 (204)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCcccC
Confidence 78999999999999998 6555 5444
No 193
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=71.58 E-value=5.3 Score=36.43 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhh-hhchHHHHhhc-CCEEEEEcCCcHH-HHhhhhchHHHHHHHHHHHHHHHHHhc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTW-FHHGKRWKAKF-RFVVGIVHTNYLE-YVKREKNDRLQAFLLEFVNSWLARVHC 226 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~-~~~~~~~~~~~-~~vi~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a 226 (562)
.+.+.++|++.+||+|++..|..... +.. .+-.... .+.+.++-|++.. .. .|+.. .+
T Consensus 78 ~~~l~~~l~~~~PD~IIsThp~~~~~~l~~-lk~~~~~~~~p~~tvvTD~~~~H~-----------------~W~~~-~~ 138 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTHPFPAQVPLSR-LKRRGRLPNIPVVTVVTDFDTVHP-----------------FWIHP-GV 138 (169)
T ss_pred HHHHHHHHhhcCCCEEEECCcchhhhHHHH-HHHhhcccCCcEEEEEcCCCCCCc-----------------CeecC-CC
Confidence 45688899999999999999986644 311 1112222 2344456666521 11 11122 26
Q ss_pred cEEEEcChhhhcc
Q 008544 227 HKVIRLSAATQEY 239 (562)
Q Consensus 227 d~vi~~S~~~~~~ 239 (562)
|..++.|+.+++.
T Consensus 139 D~y~Vase~~~~~ 151 (169)
T PF06925_consen 139 DRYFVASEEVKEE 151 (169)
T ss_pred CEEEECCHHHHHH
Confidence 9999999998874
No 194
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=70.93 E-value=94 Score=32.63 Aligned_cols=138 Identities=9% Similarity=0.032 Sum_probs=83.3
Q ss_pred cCCCCCccEEEEEeeccccC---C---HHHHHHHHHHHHHhc-CCcEEEEEeCCCCH-HHHHHHHHhcCCeeEEeCCCCC
Q 008544 267 NGNKAFTKGAYYIGRMVWSK---G---YEELLGLLNIYHKEL-AGLEMDLYGNGEDF-DQIQRAAKKLKLVVRVYPGRDH 338 (562)
Q Consensus 267 ~~~~~~~~~il~vGr~~~~K---g---~~~ll~a~~~l~~~~-~~~~l~ivG~g~~~-~~l~~~~~~l~l~~~~~~~~~~ 338 (562)
..++.+.++|+|.-.+.... + ....++..+...... .+..+++-=. +.. ..+... ....-.+..+....+
T Consensus 202 ~~~~~~k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~k~H-p~is~~~~~~-~~~~~~~~~vs~~~d 279 (388)
T COG1887 202 LPLPQDKKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIVKPH-PLISDKIDKR-YALDDFVLDVSDNAD 279 (388)
T ss_pred cCCcccCceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEEecC-hhhhhhhhhh-hhccceeEecccchh
Confidence 45566788999988776654 2 333333333333333 3455554443 332 222111 111111222333677
Q ss_pred hHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC------cccc---ccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 339 ADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFF---KQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 339 ~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~------~e~v---~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
..+++..+|++|.- ++.+..|+|..-+|||---... ..+. ....-|-++.+.+++.++|.....++
T Consensus 280 i~dll~~sDiLITD-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~ 354 (388)
T COG1887 280 INDLLLVSDILITD-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDG 354 (388)
T ss_pred HHHHHhhhCEEEee-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhccc
Confidence 88999999999943 5779999999999999874432 1222 22345566779999999999988866
Q ss_pred CC
Q 008544 410 PA 411 (562)
Q Consensus 410 ~~ 411 (562)
+.
T Consensus 355 ~~ 356 (388)
T COG1887 355 NY 356 (388)
T ss_pred ch
Confidence 65
No 195
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=70.83 E-value=11 Score=40.18 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=23.0
Q ss_pred cCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCC
Q 008544 159 DEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTN 196 (562)
Q Consensus 159 ~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~ 196 (562)
...||+||.|..... .. +..++.+++ +...+-|..
T Consensus 399 ~~~PdlI~GnYsDgn-lv--A~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGN-LV--ASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp TS--SEEEEEHHHHH-HH--HHHHHHHHT-EEEEE-SS-
T ss_pred CCCCcEEEeccCcch-HH--HHHHHhhcCCceehhhhcc
Confidence 357999999876554 33 566888888 888889966
No 196
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=69.20 E-value=25 Score=31.24 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred cEEEEEeeccccCCHHHHHHHH------HHHHHhcCCcEEEE-EeCCCC--HHHHHHHHHhcCCeeEEeCCCCChHHHHh
Q 008544 274 KGAYYIGRMVWSKGYEELLGLL------NIYHKELAGLEMDL-YGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH 344 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~------~~l~~~~~~~~l~i-vG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~~l~~ 344 (562)
.+++.+|.-. ++.|+.++ ..|.+.. =.+|+| +|.|.- .+......+..++.+..+.....+.+.++
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G-~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRG-FTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcC-ccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHh
Confidence 3456677543 66776443 3333332 245555 677621 22333333555777777888888899999
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.||+.|.- +-.-+++|-+..|+|.|+--.
T Consensus 80 ~AdlVIsH----AGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 80 SADLVISH----AGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred hccEEEec----CCcchHHHHHHcCCCEEEEeC
Confidence 99999843 335589999999999776533
No 197
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=66.28 E-value=30 Score=33.69 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=58.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
-.|-++.|..|+.-+..-...-.++++|..+. ...+++.+...|.. -+|.+|. +.....+..=|++|..... .
T Consensus 51 L~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp~-~ 129 (249)
T PTZ00254 51 LAKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDPR-T 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCCC-c
Confidence 34555666666655543322455778888665 45566666666644 3456662 2222333444555554321 2
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
-..++.||-.+|+|||+- |..+ .+++
T Consensus 130 d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 130 DHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 356899999999999998 6655 4544
No 198
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.25 E-value=1.4e+02 Score=29.29 Aligned_cols=112 Identities=9% Similarity=0.044 Sum_probs=75.9
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeC-----------CCC---HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcC
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGN-----------GED---FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYK 347 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~---~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~ad 347 (562)
..-..-+.+++.++.+++. ++.++..|. |.. .+.+.+.+++.|+.+.- .....+++.+...+|
T Consensus 23 C~vEs~e~~~~~a~~~~~~--g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vd 100 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKL--GYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLD 100 (250)
T ss_pred CccCCHHHHHHHHHHHHHc--CCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCC
Confidence 4455677788888776655 577777765 211 26677777888876443 333445556666789
Q ss_pred EEEEccCCCCCcHHHHHHH-HcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 348 VFLNPSTTDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
++=.||. +..-..+++++ ..|+||+.+..-. .+++++..+++.+.+.-.
T Consensus 101 ilqIgs~-~~~n~~LL~~va~tgkPVilk~G~~-------------~t~~e~~~A~e~i~~~Gn 150 (250)
T PRK13397 101 VIQVGAR-NMQNFEFLKTLSHIDKPILFKRGLM-------------ATIEEYLGALSYLQDTGK 150 (250)
T ss_pred EEEECcc-cccCHHHHHHHHccCCeEEEeCCCC-------------CCHHHHHHHHHHHHHcCC
Confidence 9999985 34456777776 5799999986622 478888888888876443
No 199
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=65.30 E-value=61 Score=30.39 Aligned_cols=98 Identities=14% Similarity=0.234 Sum_probs=60.1
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcC--E
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK--V 348 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~ad--v 348 (562)
.++-.|++ |...+++.+..=+...+|+.+.++|+|.. .+.++.... +.+. ..| +
T Consensus 6 g~ik~Gni----Gts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~----------------~~~e~~~pDfvi 65 (277)
T COG1927 6 GFIKCGNI----GTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAVT----------------EMLEEFNPDFVI 65 (277)
T ss_pred EEEEeccc----chHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHHH----------------HHHHhcCCCEEE
Confidence 34556666 55556665544445667999999999753 333333211 2222 224 4
Q ss_pred EEEccCCCCCcHHHHHHHH-cCCcEEe-eCCCC---ccccccCCceEee
Q 008544 349 FLNPSTTDVVCTATAEALA-MGKIVVC-ANHPS---NDFFKQFPNCRTY 392 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma-~G~PVI~-t~~~~---~e~v~~~~~g~~~ 392 (562)
++.|.-.-.-|.+.-|.++ +|.|+|. +|.++ .+.+++..-|++.
T Consensus 66 ~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIi 114 (277)
T COG1927 66 YISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYII 114 (277)
T ss_pred EeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEE
Confidence 4555555567888888887 7888554 57776 6677777777763
No 200
>PLN03015 UDP-glucosyl transferase
Probab=64.80 E-value=55 Score=35.26 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=46.1
Q ss_pred CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccc-ccCCceEee--------CCHHHHH
Q 008544 334 PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTY--------DGRNGFV 399 (562)
Q Consensus 334 ~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v-~~~~~g~~~--------~d~~~la 399 (562)
.+.....+++....+..+-+. +--++++||+++|+|+|+-..-+ ...+ +.-..|.-+ -+.+++.
T Consensus 340 ~~W~PQ~~vL~h~~vg~fvtH--~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~ 417 (470)
T PLN03015 340 TQWAPQVEILSHRSIGGFLSH--CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVA 417 (470)
T ss_pred EecCCHHHHhccCccCeEEec--CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHH
Confidence 344556677777665443332 33458999999999999986643 2222 222333332 1678999
Q ss_pred HHHHHHHh
Q 008544 400 EATLKALA 407 (562)
Q Consensus 400 ~~i~~ll~ 407 (562)
++|++++.
T Consensus 418 ~~v~~lm~ 425 (470)
T PLN03015 418 SLVRKIVA 425 (470)
T ss_pred HHHHHHHc
Confidence 99999996
No 201
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=64.13 E-value=2.2e+02 Score=31.04 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCC-HHHHHHHHH---hcCC----eeEE-eCCCCChH----HHHhhcCEEEEccC-----CCCCcHHHHHH
Q 008544 304 GLEMDLYGNGED-FDQIQRAAK---KLKL----VVRV-YPGRDHAD----PIFHDYKVFLNPST-----TDVVCTATAEA 365 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~---~l~l----~~~~-~~~~~~~~----~l~~~adv~v~pS~-----~E~~~~~~lEA 365 (562)
.+++-++|.=.+ .+.+++..+ ..+. .+.+ +...++.. +.+..+|.+++|.- .++.-..+-+|
T Consensus 289 ~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a 368 (525)
T TIGR00337 289 EVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKYA 368 (525)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHHH
Confidence 488888997322 233333333 2233 2222 22222221 34677898888742 13333456666
Q ss_pred HHcCCcEEeeCCCC
Q 008544 366 LAMGKIVVCANHPS 379 (562)
Q Consensus 366 ma~G~PVI~t~~~~ 379 (562)
...|+|++..-.|.
T Consensus 369 ~e~~iP~LGIClG~ 382 (525)
T TIGR00337 369 RENNIPFLGICLGM 382 (525)
T ss_pred HHcCCCEEEEcHHH
Confidence 77899999876653
No 202
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=62.74 E-value=1.2e+02 Score=29.83 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=73.6
Q ss_pred EEeeccccCCHHHHHHHHHHHHHhcCCcEE-----------EEEeCCCC-HHHHHHHHHhcCCeeEE-eCCCCChHHHHh
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKELAGLEM-----------DLYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFH 344 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l-----------~ivG~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~ 344 (562)
+++....-...+.+++.+..++.....+.. -.-|.|.+ .+.+++.+++.|+.+.- .....+++.+..
T Consensus 28 ~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~ 107 (260)
T TIGR01361 28 VIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAE 107 (260)
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHh
Confidence 354455556778888888877654322111 01222222 36677888888876543 333455556666
Q ss_pred hcCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALA-MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
.+|++-.||. +..-..++++++ .|+||+.+..-+ .+.+++..+++.+.+.-
T Consensus 108 ~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~G 159 (260)
T TIGR01361 108 YADILQIGAR-NMQNFELLKEVGKQGKPVLLKRGMG-------------NTIEEWLYAAEYILSSG 159 (260)
T ss_pred hCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHHcC
Confidence 6899999985 344555666654 699999987632 36788888888877543
No 203
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=62.39 E-value=1e+02 Score=29.52 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHH---HHH--HhcCCeeEEeCCC---CChHHHHhhcCEEEEccCCCCC
Q 008544 287 GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQ---RAA--KKLKLVVRVYPGR---DHADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 287 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~---~~~--~~l~l~~~~~~~~---~~~~~l~~~adv~v~pS~~E~~ 358 (562)
-.+.+.+.+..+......+.+......+...... ... ............. .+..++++.+|++|-...+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH--- 267 (286)
T PF04230_consen 191 YIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH--- 267 (286)
T ss_pred HHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH---
Confidence 3455566666665543344444444333222111 111 1111223333333 3334888999999988766
Q ss_pred cHHHHHHHHcCCcEEeeCC
Q 008544 359 CTATAEALAMGKIVVCANH 377 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t~~ 377 (562)
..+=|+++|+|+|+-+.
T Consensus 268 --~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 --GAILALSLGVPVIAISY 284 (286)
T ss_pred --HHHHHHHcCCCEEEEec
Confidence 57789999999998754
No 204
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=62.19 E-value=1.1e+02 Score=34.88 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=91.2
Q ss_pred CCccEEEEEeeccccCCHHHHHHHHHHHHHhcCC----cEEEEEeCCCC--H---HHHHHHH----HhcC--------Ce
Q 008544 271 AFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNGED--F---DQIQRAA----KKLK--------LV 329 (562)
Q Consensus 271 ~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g~~--~---~~l~~~~----~~l~--------l~ 329 (562)
.+.++++-+-+++.-||...=+.++.++..++|+ +.++.+..+.. . ++++..+ .+.+ ..
T Consensus 274 ~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~p 353 (732)
T KOG1050|consen 274 KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQP 353 (732)
T ss_pred cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccce
Confidence 3577888888999999999888899999888875 34444433221 1 1222221 1111 11
Q ss_pred eEEeCC---CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcC----CcEEeeCCCC-ccccccCCceEe-e-C-CHHHH
Q 008544 330 VRVYPG---RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMG----KIVVCANHPS-NDFFKQFPNCRT-Y-D-GRNGF 398 (562)
Q Consensus 330 ~~~~~~---~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G----~PVI~t~~~~-~e~v~~~~~g~~-~-~-d~~~l 398 (562)
++++.. ..+.-+++.-+|+++..++.+|..++.+|+.+|. .+.|.+..-| .+..++ ++. + + |.+++
T Consensus 354 V~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d---~aivvnpw~~~~~ 430 (732)
T KOG1050|consen 354 VHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED---AAIVVNPWDGDEF 430 (732)
T ss_pred EEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccc---cCEEECCcchHHH
Confidence 222222 2233378889999999999999999999999985 4555554444 555433 333 3 3 89999
Q ss_pred HHHHHHHHhCCCC
Q 008544 399 VEATLKALAEEPA 411 (562)
Q Consensus 399 a~~i~~ll~~~~~ 411 (562)
+.+|..+++..+.
T Consensus 431 ~~~i~~al~~s~~ 443 (732)
T KOG1050|consen 431 AILISKALTMSDE 443 (732)
T ss_pred HHHHHHHhhcCHH
Confidence 9999999998775
No 205
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=61.58 E-value=45 Score=30.13 Aligned_cols=65 Identities=8% Similarity=-0.019 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC-CCChHHHHhhcCEEEEc
Q 008544 287 GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNP 352 (562)
Q Consensus 287 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~-~~~~~~l~~~adv~v~p 352 (562)
.+...+++++.+....-|.-+++-|++ |...+-+.+++.|..+.+++. .....++.+.||-|+.-
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~-DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDA-DFLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIIL 155 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccH-hHHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeC
Confidence 677899999887544445555555654 566666667778998888884 34556899999988864
No 206
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=59.58 E-value=10 Score=30.33 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=30.6
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHH-hhcC-CEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWK-AKFR-FVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~-~~~~-~vi~~~h~~~ 197 (562)
-++.++.+++.||||.|...+. +.+...+. +.++ +.|++-|+.+
T Consensus 41 l~R~IlirE~I~IVHgH~a~S~--l~hE~i~hA~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 41 LLRNILIRERIDIVHGHQAFST--LCHEAILHARTMGLKTVFTDHSLF 86 (90)
T ss_pred HHHHHHHHcCeeEEEeehhhhH--HHHHHHHHHHhCCCcEEeeccccc
Confidence 3777888999999999987554 23334443 3444 7898888654
No 207
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=58.48 E-value=48 Score=28.85 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHH
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTA 361 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~ 361 (562)
..+|++.|.+.+.+++.+ .+.+.+....+.+++.....+...+++.|.+...++.. .+|+.|+....-.-=.+
T Consensus 32 a~~n~~~L~~q~~~f~p~-----~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~p 106 (129)
T PF02670_consen 32 AGSNIEKLAEQAREFKPK-----YVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVVNAIVGFAGLKP 106 (129)
T ss_dssp ESSTHHHHHHHHHHHT-S-----EEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEEE--SSGGGHHH
T ss_pred cCCCHHHHHHHHHHhCCC-----EEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEEEeCcccchHHH
Confidence 378999999998776433 56666544456666665545667888888777777776 67898888543222345
Q ss_pred HHHHHHcCCcEEeeC
Q 008544 362 TAEALAMGKIVVCAN 376 (562)
Q Consensus 362 ~lEAma~G~PVI~t~ 376 (562)
.++|+-.|+-+--.+
T Consensus 107 t~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 107 TLAAIKAGKDIALAN 121 (129)
T ss_dssp HHHHHHTTSEEEE--
T ss_pred HHHHHHCCCeEEEec
Confidence 889999998765543
No 208
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=58.47 E-value=17 Score=31.22 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 336 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.++.++++..+|+.|--|..+..--.+-.|+.+|+|+|+...|.
T Consensus 58 ~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 58 TDDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp BS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred chhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 36788999999999988876666666778889999999987764
No 209
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=58.26 E-value=2.1e+02 Score=29.98 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHHHh------cCCcEEEEEeCC---CCHHHHHHHHHhcCCeeEE-eCCCCChHHHHhh--cCEEEE
Q 008544 284 WSKGYEELLGLLNIYHKE------LAGLEMDLYGNG---EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHD--YKVFLN 351 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g---~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~--adv~v~ 351 (562)
...|++..++++...... .++-.+.|+|.- .+..+++++.+++|++++. +.+....+++-+. |.+-|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv 213 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLV 213 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEE
Confidence 456788888776544321 123567778862 2458899999999999765 6666677766554 444444
Q ss_pred ccCCCCCcHHHHHHHH--cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 352 PSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 352 pS~~E~~~~~~lEAma--~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
.+. .++..+.+.|. .|.|.+....-+ .++.+++.+.|.+++..
T Consensus 214 ~~~--~~~~~~a~~L~~r~GiP~~~~~p~G------------~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 214 HCS--RSMNYLAREMEERYGIPYMEVNFYG------------FEDTSESLRKIAKFFGD 258 (406)
T ss_pred ECh--HHHHHHHHHHHHhhCCCEEEecCCc------------HHHHHHHHHHHHHHhCC
Confidence 332 23455555553 799998642101 14677788888877653
No 210
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=57.88 E-value=14 Score=34.62 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=27.6
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 92 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~ 92 (562)
|||++..|-.. .+..+..|++.|.+.| |+|+|++|..
T Consensus 1 M~ILlTNDDGi-----~a~Gi~aL~~~L~~~g-~~V~VvAP~~ 37 (196)
T PF01975_consen 1 MRILLTNDDGI-----DAPGIRALAKALSALG-HDVVVVAPDS 37 (196)
T ss_dssp SEEEEE-SS-T-----TSHHHHHHHHHHTTTS-SEEEEEEESS
T ss_pred CeEEEEcCCCC-----CCHHHHHHHHHHHhcC-CeEEEEeCCC
Confidence 78998887543 2456888889997776 9999999955
No 211
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=57.20 E-value=2e+02 Score=28.35 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=75.1
Q ss_pred EEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeC-----------CCC---HHHHHHHHHhcCCeeEE-eCCCCChHH
Q 008544 277 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-----------GED---FDQIQRAAKKLKLVVRV-YPGRDHADP 341 (562)
Q Consensus 277 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~---~~~l~~~~~~l~l~~~~-~~~~~~~~~ 341 (562)
+.++.-..-...+.+++.++.+++. .++++..|. |.. .+.+++.+++.|+.+.- .....+.+.
T Consensus 29 ~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~ 106 (266)
T PRK13398 29 IIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEE 106 (266)
T ss_pred EEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHH
Confidence 3444444556788999999999875 566777772 111 25677777888886544 334455555
Q ss_pred HHhhcCEEEEccCCCCCcHHHHHH-HHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 342 IFHDYKVFLNPSTTDVVCTATAEA-LAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 342 l~~~adv~v~pS~~E~~~~~~lEA-ma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
+...+|++-.+|.. .....++++ -..|+||+.++..+ .+.+++..+++.+.+.
T Consensus 107 l~~~vd~~kIga~~-~~n~~LL~~~a~~gkPV~lk~G~~-------------~s~~e~~~A~e~i~~~ 160 (266)
T PRK13398 107 VADYADMLQIGSRN-MQNFELLKEVGKTKKPILLKRGMS-------------ATLEEWLYAAEYIMSE 160 (266)
T ss_pred HHHhCCEEEECccc-ccCHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHhc
Confidence 55568999999852 333445544 45799999987632 3667777777777653
No 212
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=57.06 E-value=69 Score=33.44 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC----------CCChHHHHhhcCEEE--EccCCC----C---CcHHHH
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG----------RDHADPIFHDYKVFL--NPSTTD----V---VCTATA 363 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~----------~~~~~~l~~~adv~v--~pS~~E----~---~~~~~l 363 (562)
.+-++-|+|-|.--..+.+.++.+|.++..+.+ ..+.+++++.||+++ .|...+ + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 456888888887667777777888877665421 335679999999887 454333 3 566788
Q ss_pred HHHHcCCcEEeeCCCC
Q 008544 364 EALAMGKIVVCANHPS 379 (562)
Q Consensus 364 EAma~G~PVI~t~~~~ 379 (562)
++|.-|.-+|-+..|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (378)
T PRK15438 195 RSLKPGAILINACRGA 210 (378)
T ss_pred hcCCCCcEEEECCCch
Confidence 9999998888887764
No 213
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=56.20 E-value=2.6e+02 Score=30.64 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=68.7
Q ss_pred EEeeccccCCHHHHHHHHHHHHHh--------cCCcEEEEEeCC----CCHHHHHHHHHhcCCeeEEeC-----------
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKE--------LAGLEMDLYGNG----EDFDQIQRAAKKLKLVVRVYP----------- 334 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~--------~~~~~l~ivG~g----~~~~~l~~~~~~l~l~~~~~~----------- 334 (562)
|.| ....|++..++++-+.... .++-++-|+|.- .+..+++++.+.+|+++.++.
T Consensus 188 F~G--s~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~ 265 (515)
T TIGR01286 188 FVG--SHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPAD 265 (515)
T ss_pred Ccc--cHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCC
Confidence 455 3457888888776543211 123456677521 246889999999999877543
Q ss_pred -------CCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHH--cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHH
Q 008544 335 -------GRDHADPIFHD--YKVFLNPSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATL 403 (562)
Q Consensus 335 -------~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma--~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~ 403 (562)
+-..++++-.. |.+-|.- ..-.+....|.|. +|.|.+....+. -+...++|..+|.
T Consensus 266 g~~~~~~ggttleei~~a~~A~~~ivl--~~~~~~~~a~~l~~~~g~p~~~~~~Pi-----------Gi~~Td~fL~~la 332 (515)
T TIGR01286 266 GEFRMYAGGTTLEEMKDAPNAEATVLL--QPYTLRKTKEYIEKTWKQETPKLNIPL-----------GVKGTDEFLMKVS 332 (515)
T ss_pred CCccccCCCCCHHHHHHhhhCcEEEEE--chhhhHHHHHHHHHHhCCCcccCCCCc-----------cHHHHHHHHHHHH
Confidence 22344444443 3333322 2222456777776 799987766541 0135678888888
Q ss_pred HHHhCC
Q 008544 404 KALAEE 409 (562)
Q Consensus 404 ~ll~~~ 409 (562)
++...+
T Consensus 333 ~~~g~~ 338 (515)
T TIGR01286 333 EISGQP 338 (515)
T ss_pred HHHCCC
Confidence 877654
No 214
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=54.87 E-value=54 Score=29.92 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCC-CCChHHHHhhcCEEEEccCCCCCcHHHHHHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~-~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 367 (562)
..++.++.+.....+-+++++|.|+. ...+-....+.+..+.+... .++..+.++++|++|..+.... +.-.|.+.
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~ 107 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG--LVKGDMVK 107 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc--eecHHHcc
Confidence 34444444433445789999999875 44355555556666555433 4567789999999998865422 23334333
Q ss_pred cCCcEEeeCCCC
Q 008544 368 MGKIVVCANHPS 379 (562)
Q Consensus 368 ~G~PVI~t~~~~ 379 (562)
-| .+.-|.+.
T Consensus 108 ~~--~viIDla~ 117 (168)
T cd01080 108 PG--AVVIDVGI 117 (168)
T ss_pred CC--eEEEEccC
Confidence 33 44555554
No 215
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=54.54 E-value=63 Score=23.32 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=42.1
Q ss_pred cEEEEEeC--CCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 305 LEMDLYGN--GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 305 ~~l~ivG~--g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
..+.+.|. +.+++.+++++..+|..+.-.. . ..++.+|.++.... ....+|...|+|||..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~--~------~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSV--S------KKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccc--c------CCceEEEECCCCCc--hHHHHHHHcCCeEecHH
Confidence 56788887 4678999999999887533211 1 45667777653322 12788899999998764
No 216
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=54.34 E-value=52 Score=34.30 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=58.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHH
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTA 361 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~ 361 (562)
..++++.+.+...++. .+.+.+.+......+++... +....++.|.+...++... +|++|.......---.
T Consensus 35 a~~n~~~l~~q~~~f~-----p~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~p 107 (385)
T PRK05447 35 AGKNVELLAEQAREFR-----PKYVVVADEEAAKELKEALA--AAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLP 107 (385)
T ss_pred cCCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhc--cCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHH
Confidence 3568887777665443 34666766443445554332 2234577777778888774 5888888765433466
Q ss_pred HHHHHHcCCcEEeeCCC
Q 008544 362 TAEALAMGKIVVCANHP 378 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~ 378 (562)
+++|+.+|++|.+.+-.
T Consensus 108 tl~Ai~aGK~VaLANKE 124 (385)
T PRK05447 108 TLAAIRAGKRIALANKE 124 (385)
T ss_pred HHHHHHCCCcEEEeCHH
Confidence 99999999999997653
No 217
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.84 E-value=2.7e+02 Score=28.75 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=76.8
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeC-------------CCC-HHHHHHHHHhcCCeeEE-eCCCCC
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-------------GED-FDQIQRAAKKLKLVVRV-YPGRDH 338 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-------------g~~-~~~l~~~~~~l~l~~~~-~~~~~~ 338 (562)
+.++.+| -..-.+.+.+++.++.+++. .++++-.|. |.+ .+.+.+..++.|+.+.- .....+
T Consensus 101 ~l~vIAG-PCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~ 177 (352)
T PRK13396 101 PVVVVAG-PCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAAD 177 (352)
T ss_pred eEEEEEe-CCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHH
Confidence 3445555 34456778888888888766 455555443 211 25566666788876443 233445
Q ss_pred hHHHHhhcCEEEEccCCCCCcHHHHHHH-HcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 339 ADPIFHDYKVFLNPSTTDVVCTATAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 339 ~~~l~~~adv~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
++.+...+|++=.+|.. ..-..+++++ ..|+||+.+..-+ .+.+++..+++.+.+...
T Consensus 178 v~~~~~~~d~lqIga~~-~~n~~LL~~va~t~kPVllk~G~~-------------~t~ee~~~A~e~i~~~Gn 236 (352)
T PRK13396 178 LEKIAEVADVIQVGARN-MQNFSLLKKVGAQDKPVLLKRGMA-------------ATIDEWLMAAEYILAAGN 236 (352)
T ss_pred HHHHHhhCCeEEECccc-ccCHHHHHHHHccCCeEEEeCCCC-------------CCHHHHHHHHHHHHHcCC
Confidence 55555668999999852 3335556665 6799999987632 378888888888876443
No 218
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=53.61 E-value=78 Score=32.05 Aligned_cols=56 Identities=9% Similarity=0.155 Sum_probs=37.2
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
.+.+++++.||++++ |...|+ ++-..++.|--|.-+|-+..|+ ++ |.++|.++++.
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~--vV----------De~AL~~AL~~ 248 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG--IV----------NEKDLAKALDE 248 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc--cc----------CHHHHHHHHHc
Confidence 467799999997665 444444 7777888887777777665543 22 55666666553
No 219
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=53.60 E-value=1e+02 Score=23.69 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=39.0
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeC
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP 334 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~ 334 (562)
...|++.|.-. ....+.+.+++.++.++.|+..|+--|...- ..-..+.+++.++....|.
T Consensus 3 g~rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 3 GMRVLITGGRD-WTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCEEEEEECCc-cccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 34555555433 3488889999999999988876444343122 4555677788887655543
No 220
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.15 E-value=84 Score=30.01 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=53.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHh--cCCeeE-EeCCCCChHHHHhhcCEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKK--LKLVVR-VYPGRDHADPIFHDYKVF 349 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~--l~l~~~-~~~~~~~~~~l~~~adv~ 349 (562)
...|+|+|+ ..+...+++.+++=...+.-.+-++-|-=-+...+.....+ +..... .|...... |++
T Consensus 108 ~GiILFv~t---n~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~~~~~~pd~~~f~~t~~~-------D~v 177 (251)
T KOG0832|consen 108 GGIILFVGT---NNGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVRKFLSLPDALCFLPTLTP-------DLV 177 (251)
T ss_pred CCeEEEEec---CcchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccccccCCCcceeecccCCc-------cee
Confidence 567889996 34566666665543333323344444432222222211111 111111 23332222 877
Q ss_pred EEccCCCCCcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 350 LNPSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 350 v~pS~~E~~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
|.-...|. -.+++||.-+++|+|+- |..+ ++++
T Consensus 178 vvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 178 VVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred EecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 77766665 56899999999999998 5555 5554
No 221
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.93 E-value=1.2e+02 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=26.8
Q ss_pred hcC-EEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 345 DYK-VFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 345 ~ad-v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+| +.+.|...+...-.+-++...|+|||..+.+
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 567 4456666667777888899999999999887
No 222
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=52.19 E-value=74 Score=32.10 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHhcCCcE-E-EEEeCCCC-----HHHHHHHHHhcCCeeEE--eCCCCChH----HHHhhcCEEEEccC---CCCCcHHH
Q 008544 299 HKELAGLE-M-DLYGNGED-----FDQIQRAAKKLKLVVRV--YPGRDHAD----PIFHDYKVFLNPST---TDVVCTAT 362 (562)
Q Consensus 299 ~~~~~~~~-l-~ivG~g~~-----~~~l~~~~~~l~l~~~~--~~~~~~~~----~l~~~adv~v~pS~---~E~~~~~~ 362 (562)
+.-.|+++ + +++..++. -++++..+++.|+++.- .....+.+ .+....|++..|.. .-++...+
T Consensus 153 k~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~ 232 (322)
T COG2984 153 KALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLL 232 (322)
T ss_pred HHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHH
Confidence 34467764 3 45666653 37788888888988654 33455555 33356788888842 23466778
Q ss_pred HHHHHcCCcEEeeCCC
Q 008544 363 AEALAMGKIVVCANHP 378 (562)
Q Consensus 363 lEAma~G~PVI~t~~~ 378 (562)
.+|....+|++++|.+
T Consensus 233 ~~a~~~kiPli~sd~~ 248 (322)
T COG2984 233 QVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHhCCCeecCCHH
Confidence 9999999999999884
No 223
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=52.11 E-value=61 Score=29.71 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.1
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC--------------CCChHHHHhhcCEEEE--ccCCC---CCcHHHHHH
Q 008544 305 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG--------------RDHADPIFHDYKVFLN--PSTTD---VVCTATAEA 365 (562)
Q Consensus 305 ~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~--------------~~~~~~l~~~adv~v~--pS~~E---~~~~~~lEA 365 (562)
-++-|+|.|.--..+-+.++.+|.++.++.. ..+.+++++.+|++++ |...| -++-..++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~ 116 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAK 116 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeec
Confidence 4555555554444455555555554443221 3467789999997775 33333 367778888
Q ss_pred HHcCCcEEeeCCC
Q 008544 366 LAMGKIVVCANHP 378 (562)
Q Consensus 366 ma~G~PVI~t~~~ 378 (562)
|--|.-+|-+..|
T Consensus 117 mk~ga~lvN~aRG 129 (178)
T PF02826_consen 117 MKPGAVLVNVARG 129 (178)
T ss_dssp STTTEEEEESSSG
T ss_pred cccceEEEeccch
Confidence 8888777766554
No 224
>PRK06932 glycerate dehydrogenase; Provisional
Probab=51.85 E-value=77 Score=32.18 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=44.2
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCeeEEeC---------CCCChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCC
Q 008544 305 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYP---------GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGK 370 (562)
Q Consensus 305 ~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~---------~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~ 370 (562)
-++-|+|.|.--..+-+.++.+|.++..+. ++.+.+++++.||++++ |...|+ ++-..++.|--|.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga 227 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTA 227 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCe
Confidence 445555554443444444444444433321 23467899999997775 433333 7777888888787
Q ss_pred cEEeeCCC
Q 008544 371 IVVCANHP 378 (562)
Q Consensus 371 PVI~t~~~ 378 (562)
-+|-+..|
T Consensus 228 ~lIN~aRG 235 (314)
T PRK06932 228 FLINTGRG 235 (314)
T ss_pred EEEECCCc
Confidence 77777654
No 225
>PRK06487 glycerate dehydrogenase; Provisional
Probab=51.75 E-value=72 Score=32.42 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeC--------CCCChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCC
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP--------GRDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGK 370 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~--------~~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~ 370 (562)
+-++-|+|.|.--..+-+.++.+|.++..+. ...+.+++++.+|++++ |...|+ ++-..++.|--|.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 3455555555444445555555555544322 12356799999997775 333333 7777888888887
Q ss_pred cEEeeCCC
Q 008544 371 IVVCANHP 378 (562)
Q Consensus 371 PVI~t~~~ 378 (562)
-+|-+..|
T Consensus 228 ~lIN~aRG 235 (317)
T PRK06487 228 LLINTARG 235 (317)
T ss_pred EEEECCCc
Confidence 77776554
No 226
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=51.39 E-value=2.2e+02 Score=30.62 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHcCCcEEeeCCCC-----ccccc-cCCceEeeC---CHHHHHHHHHHHHhCCC
Q 008544 357 VVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTYD---GRNGFVEATLKALAEEP 410 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~~~~-----~e~v~-~~~~g~~~~---d~~~la~~i~~ll~~~~ 410 (562)
|++. ++|++.+|+|+|+...-+ ...+. .+..+.... +..++.+++..+++++.
T Consensus 363 G~nS-t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 363 GWNS-TLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred cccH-HHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 4444 499999999999654322 33333 334444431 23338888888887664
No 227
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=50.19 E-value=3.2e+02 Score=28.54 Aligned_cols=194 Identities=11% Similarity=0.062 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhccEEEEcChhhhccCCCc-cccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHH-
Q 008544 212 FLLEFVNSWLARVHCHKVIRLSAATQEYPNSI-VCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYE- 289 (562)
Q Consensus 212 ~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~- 289 (562)
...+++.+...+. |..+++--+...++.+.. +....+-|+.|.-+.............+...+.+.+-.+.+.+.-+
T Consensus 140 ~~s~~~~~~~~~~-~s~i~vRD~~S~~llk~~gi~a~l~~D~Af~L~~~~~~~~~~~~~~~~~~~~i~lr~~~~~~t~~~ 218 (385)
T COG2327 140 PLSRQLLNYVLGG-CSAISVRDPVSYELLKQLGINARLVTDPAFLLPASSQNATASDVEAREKTVAITLRGLHPDNTAQR 218 (385)
T ss_pred HHHHHHHHHHhcC-CcEEEEecHHhHHHHHHcCCCeEeecCcceecccccccccccccccccceEEEEecccCCchhhhH
Confidence 3444444444443 677776666555554422 2222223665543221111111111222233444444443322211
Q ss_pred ----HHHHHHHHH---HHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC---C-CChHHHHhhcCEEEEccCCCCC
Q 008544 290 ----ELLGLLNIY---HKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG---R-DHADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 290 ----~ll~a~~~l---~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~---~-~~~~~l~~~adv~v~pS~~E~~ 358 (562)
.+-+++..+ ....-.++++-++.-++..-.+..+.......+++-- + +..-..++++|++|-.-.+
T Consensus 219 ~~~~~v~~~l~~~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H--- 295 (385)
T COG2327 219 SILKYVNEALDLVERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH--- 295 (385)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH---
Confidence 223333332 2222123444444434444445555444433444222 2 1222577899998866443
Q ss_pred cHHHHHHHHcCCcEEeeCCCC--cccccc-CCceEee----CCHHHHHHHHHHHHhCCCC
Q 008544 359 CTATAEALAMGKIVVCANHPS--NDFFKQ-FPNCRTY----DGRNGFVEATLKALAEEPA 411 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t~~~~--~e~v~~-~~~g~~~----~d~~~la~~i~~ll~~~~~ 411 (562)
+++=||+.|+|+|+-.... ..+.++ +-.++.. .|.+.+.+...+.+.+.++
T Consensus 296 --saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~ 353 (385)
T COG2327 296 --SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDE 353 (385)
T ss_pred --HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHH
Confidence 5778999999999987653 333332 2223332 2777888877777765443
No 228
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=49.02 E-value=3.1e+02 Score=28.08 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=71.7
Q ss_pred EeeccccCCHHHHHHHHHHHHHhcCCcEEEE-------------EeCCCC-HHHHHHHHHhcCCeeEE-eCCCCChHHHH
Q 008544 279 IGRMVWSKGYEELLGLLNIYHKELAGLEMDL-------------YGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIF 343 (562)
Q Consensus 279 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-------------vG~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~l~ 343 (562)
++.-..-...+.+++.+..+++.. .++.. -|-|.. .+.+.+.+++.|+.+.- .....+++.+.
T Consensus 97 IAGPCsiEs~e~~~~~A~~lk~~g--a~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~ 174 (335)
T PRK08673 97 IAGPCSVESEEQILEIARAVKEAG--AQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVA 174 (335)
T ss_pred EEecCccCCHHHHHHHHHHHHHhc--hhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH
Confidence 333444557778888888876653 22221 222222 35566777888886544 34445555555
Q ss_pred hhcCEEEEccCCCCCcHHHH-HHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 344 HDYKVFLNPSTTDVVCTATA-EALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 344 ~~adv~v~pS~~E~~~~~~l-EAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
..+|++=.+|.. .....++ ++-..|+||+.++.-+ .+.+++..+++.+.+.-.
T Consensus 175 ~~vd~lqIgAr~-~~N~~LL~~va~~~kPViLk~G~~-------------~ti~E~l~A~e~i~~~GN 228 (335)
T PRK08673 175 EYVDILQIGARN-MQNFDLLKEVGKTNKPVLLKRGMS-------------ATIEEWLMAAEYILAEGN 228 (335)
T ss_pred HhCCeEEECccc-ccCHHHHHHHHcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHHcCC
Confidence 668999999853 3334444 4556799999987632 367788888888876433
No 229
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=48.96 E-value=49 Score=29.10 Aligned_cols=90 Identities=17% Similarity=0.272 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhhc----C-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+++++..+.++....+-+ +.++++ | +.++|--+-..+.++.+|++ .++|+|---.. .+|
T Consensus 31 ~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~ 110 (141)
T TIGR01088 31 EIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRH 110 (141)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 555666677777777765543333 455444 4 78889777678999999975 68999865332 244
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.+.. -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 111 HSYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred cccccccceEEEeecCHHHHHHHHHHHH
Confidence 444556666664 5666666666554
No 230
>PLN02928 oxidoreductase family protein
Probab=47.94 E-value=88 Score=32.27 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCChHHHHhhcCEEEEc--cCCCC---CcHHHHHHHHcCCcEEeeCCC
Q 008544 335 GRDHADPIFHDYKVFLNP--STTDV---VCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 335 ~~~~~~~l~~~adv~v~p--S~~E~---~~~~~lEAma~G~PVI~t~~~ 378 (562)
...+.+++++.||++++. ...|+ ++-..++.|--|.-+|-+..|
T Consensus 216 ~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG 264 (347)
T PLN02928 216 GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARG 264 (347)
T ss_pred cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCc
Confidence 456788999999977763 33333 666677778777666666544
No 231
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=47.69 E-value=19 Score=31.12 Aligned_cols=20 Identities=35% Similarity=0.384 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCCeEEEEee
Q 008544 70 PLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 70 ~~~la~~L~~~Gg~eVtvit~ 90 (562)
.+.++++|.++| |||++.++
T Consensus 15 ~lala~~L~~rG-h~V~~~~~ 34 (139)
T PF03033_consen 15 FLALARALRRRG-HEVRLATP 34 (139)
T ss_dssp HHHHHHHHHHTT--EEEEEET
T ss_pred HHHHHHHHhccC-CeEEEeec
Confidence 356889999998 99998877
No 232
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=47.28 E-value=2.1e+02 Score=26.71 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=44.6
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCC-ChHH-------------------------HHhhcCEEEEcc
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD-HADP-------------------------IFHDYKVFLNPS 353 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~-~~~~-------------------------l~~~adv~v~pS 353 (562)
+-++.++|..+. ...+++.++..+.. .++.+|.- +-.. ....-|++|...
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 567888887654 34455555554433 34556622 2221 122346665554
Q ss_pred CCCCCcHHHHHHHHcCCcEEee-CCCC
Q 008544 354 TTDVVCTATAEALAMGKIVVCA-NHPS 379 (562)
Q Consensus 354 ~~E~~~~~~lEAma~G~PVI~t-~~~~ 379 (562)
..+ -..++.||..+|.|+|+- |...
T Consensus 136 ~~~-~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 136 PRK-EHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred Ccc-chHHHHHHHHcCCCEEEEecCCC
Confidence 322 278899999999999998 5543
No 233
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=47.05 E-value=40 Score=27.45 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=50.2
Q ss_pred EEEEeCCCC-----HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 307 MDLYGNGED-----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 307 l~ivG~g~~-----~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
|...|.|-. ...+++..+++|++..+ .-..++.......+|+++.... .+.|+.... |.+++.-+.
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~l~~~~~~~~~-----~~v~~~~~~-- 77 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTKLADEFEDIPK-----GYVVITGNG-- 77 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehHhhhhcCcCCC-----ceEEEEccc--
Confidence 455677654 47788888999986554 3445666677888899886642 222311111 444443332
Q ss_pred ccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 380 NDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 380 ~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
-|.+++.++|.+.++
T Consensus 78 -------------~d~~ei~~~l~~~L~ 92 (93)
T COG3414 78 -------------MDIEEIKQKLLEILK 92 (93)
T ss_pred -------------CCHHHHHHHHHHHHh
Confidence 378888888888765
No 234
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=46.62 E-value=1.6e+02 Score=26.14 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHh----hcC-EEEEccCCCCCcHHHHHHH-HcCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+++++..+.++....+-+ +.++ .+| +.++|--+--.+.++.+|+ +.++|+|---.. .+|
T Consensus 33 ~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK13015 33 ALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 455666666777777665433333 3333 334 7888976667899999996 468999865322 244
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHHh
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKALA 407 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll~ 407 (562)
++.+-..|.+.. -.+...-+++.+++
T Consensus 113 ~S~is~~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 113 HSYVSAIADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccccCceeEEEeeCCHHHHHHHHHHHHH
Confidence 555556777764 56666666666553
No 235
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=46.01 E-value=1.4e+02 Score=27.17 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=40.0
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhc---CCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF---RFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHC 226 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~---~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 226 (562)
+.....++.+.+||+|++.+|...-.+...+.+.+.+ +..+.++-+. .+....+. . -+.++.+ +
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~----aRv~~lSl-T-------Gklly~~-a 147 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF----ARVKTLSL-T-------GKLLYPF-A 147 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee----eecCCCch-H-------HHHHHHh-C
Confidence 3344556677889999999987663332222222111 3333333211 11111111 1 2223333 8
Q ss_pred cEEEEcChhhhcc
Q 008544 227 HKVIRLSAATQEY 239 (562)
Q Consensus 227 d~vi~~S~~~~~~ 239 (562)
|.+++.-+..++.
T Consensus 148 D~f~VQW~~l~~~ 160 (170)
T PF08660_consen 148 DRFIVQWEELAEK 160 (170)
T ss_pred CEEEEcCHHHHhH
Confidence 9999999988874
No 236
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=45.92 E-value=54 Score=35.29 Aligned_cols=71 Identities=14% Similarity=0.029 Sum_probs=50.3
Q ss_pred CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC-cEEeeCCCC---ccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 336 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-IVVCANHPS---NDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-PVI~t~~~~---~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
.....+.++.+..++.|.-.+...-.++||+..|| |||.+|.-- .+.+.-..-.+.++ .+++-+.|.+.|.
T Consensus 334 ~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~ 408 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILL 408 (464)
T ss_pred cchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHH
Confidence 45566899999999999988888889999999997 999998742 34443333334444 5555555455554
No 237
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=45.52 E-value=1.9e+02 Score=29.76 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=57.5
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcC-CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcC--EE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELA-GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK--VF 349 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~-~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~ad--v~ 349 (562)
...+..+|. .. | ...++++. +.+ +++++-+-+ .+.+..++.+++++.. .+.+.++++...| +.
T Consensus 3 ~~rVgViG~-~~--G-~~h~~al~----~~~~~~eLvaV~d-~~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V 68 (343)
T TIGR01761 3 VQSVVVCGT-RF--G-QFYLAAFA----AAPERFELAGILA-QGSERSRALAHRLGVP-----LYCEVEELPDDIDIACV 68 (343)
T ss_pred CcEEEEEeH-HH--H-HHHHHHHH----hCCCCcEEEEEEc-CCHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEE
Confidence 345667775 22 2 23455553 334 688877665 4567778888888753 4578888887655 44
Q ss_pred EEccC--CCCCcHHHHHHHHcCCcEEeeCC
Q 008544 350 LNPST--TDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 350 v~pS~--~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.|+. ...-.-...+||..|+.|+|=.-
T Consensus 69 ~ipt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 69 VVRSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred EeCCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 44442 12223456789999999999754
No 238
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=44.72 E-value=1.3e+02 Score=30.39 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=49.0
Q ss_pred cEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 305 LEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 305 ~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++-+.+ .+.+..++.+++.+.. ..+.+.+++++. .|+++..+....-.-.+..|+..|++|+|=..
T Consensus 30 ~~~vav~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 30 LELVAVVD-RDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred eEEEEEec-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 34444443 4577788888888865 446788888886 47777776554544556999999999999865
No 239
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.37 E-value=1.6e+02 Score=29.20 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=48.5
Q ss_pred cCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 302 LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 302 ~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+++++..+-+ .+.+..++.+++++.. ....+.++++...|+++..+..+...-...+++..|++|++...
T Consensus 29 ~~~~el~aV~d-r~~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~ 99 (271)
T PRK13302 29 LPGLTLSAVAV-RDPQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSV 99 (271)
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecc
Confidence 46788876655 3455556666655521 12467788888999888877665555567888999999998644
No 240
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=43.66 E-value=1.5e+02 Score=29.98 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=43.3
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChH------HHH--------hhcCEEEEccCCCCCcHHHHHH
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHAD------PIF--------HDYKVFLNPSTTDVVCTATAEA 365 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~------~l~--------~~adv~v~pS~~E~~~~~~lEA 365 (562)
+..||..++|-|...-...++...+.+|+.+.-.+|.+..+ ..+ ....++|.--+ + ++-.++|+
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~Gw-D-y~~~~~e~ 150 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGW-D-YADALMEL 150 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEecc-c-cHHHHHHH
Confidence 44565555444443335677777777787766666655444 122 22234443333 2 22388999
Q ss_pred HHcCC-cEEeeCCC
Q 008544 366 LAMGK-IVVCANHP 378 (562)
Q Consensus 366 ma~G~-PVI~t~~~ 378 (562)
|--|+ ||+.++..
T Consensus 151 ~k~~~~p~~~~n~~ 164 (337)
T COG2247 151 MKEGIVPVILKNTS 164 (337)
T ss_pred HhcCcceeEecccc
Confidence 99884 77776553
No 241
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=43.22 E-value=1.5e+02 Score=29.16 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=23.1
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED 315 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~ 315 (562)
.-+|+|.-...+-+..+.+++..-.+-.-..-+.++..|+.
T Consensus 116 ~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~ 156 (265)
T COG1830 116 ATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPA 156 (265)
T ss_pred EEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 34577776666666666666665544332344445555543
No 242
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=42.38 E-value=1.4e+02 Score=26.85 Aligned_cols=126 Identities=16% Similarity=0.104 Sum_probs=73.6
Q ss_pred cCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhhc---CEEEEccCCCCCcHHHHHHHHcCCc----EE
Q 008544 302 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDY---KVFLNPSTTDVVCTATAEALAMGKI----VV 373 (562)
Q Consensus 302 ~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~a---dv~v~pS~~E~~~~~~lEAma~G~P----VI 373 (562)
.|+-.|+|+-+... ...+....+.-|..+..-.+..+.-...+.. -..|---..++.|+.++|++..-.+ ||
T Consensus 7 ~pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivv 86 (182)
T COG4567 7 GPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVV 86 (182)
T ss_pred CCCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEE
Confidence 45556777775322 3445555555566555444433333333322 1333334567899999999987654 67
Q ss_pred eeCCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC-----CccHHHHhcCCHHHHHHHH
Q 008544 374 CANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA-----QPTDAQTHQLSWESATERF 430 (562)
Q Consensus 374 ~t~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~-----~l~~~ar~~~sw~~~~~~~ 430 (562)
.|..++ -+-|+-|..-++.. |.+++..++.+--.+... .|+. .+..||.+-+-+
T Consensus 87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~---~rl~WEhIqrvl 151 (182)
T COG4567 87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSA---DRLRWEHIQRVL 151 (182)
T ss_pred EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCch---hHhhHHHHHHHH
Confidence 777765 45566666666653 889988888776433332 3332 467888765443
No 243
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=42.18 E-value=1.1e+02 Score=29.66 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=20.1
Q ss_pred cHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 359 CTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
-+++.||--+|.|||+- |..+ ++.|
T Consensus 169 ~iAv~EA~klgIPVvAlvDTn~dpd~V 195 (252)
T COG0052 169 KIAVKEANKLGIPVVALVDTNCDPDGV 195 (252)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCccC
Confidence 46899999999999998 6655 5554
No 244
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=42.01 E-value=58 Score=28.85 Aligned_cols=90 Identities=14% Similarity=0.271 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhhc----C-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+++++..+.++....+-+ +.++++ | +.++|--+--.+.++.+|++ .++|+|---.. .+|
T Consensus 33 ~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK05395 33 ALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 455556666677766665433333 444443 4 78889766678999999975 68999865332 243
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.+.. -.+...-++..++
T Consensus 113 ~S~is~~a~G~I~G~G~~gY~lAl~al~ 140 (146)
T PRK05395 113 HSYISDVAVGVICGFGADGYLLALEALA 140 (146)
T ss_pred cccccccceEEEeeCCHHhHHHHHHHHH
Confidence 344556666664 5566666665554
No 245
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=41.23 E-value=46 Score=28.53 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=30.9
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|++.|+.+. +|+.+-.+...+.+|..|.+.|+++|.|+-.
T Consensus 1 m~~~Ivvt~-ppYg~q~a~~A~~fA~all~~gh~~v~iFly 40 (126)
T COG1553 1 MKYTIVVTG-PPYGTESAFSALRFAEALLEQGHELVRLFLY 40 (126)
T ss_pred CeEEEEEec-CCCccHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 467777664 4776666788899999999997688999855
No 246
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=41.19 E-value=2.3e+02 Score=27.35 Aligned_cols=97 Identities=14% Similarity=0.286 Sum_probs=55.3
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcC--E
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK--V 348 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~ad--v 348 (562)
.|+=+|++ |...+++.+-.=+....|+...++|+|.. .++...... ..+. .-| +
T Consensus 6 GiiKlGNi----g~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~----------------~~~~~~~pDf~i 65 (277)
T PRK00994 6 GIIKLGNI----GMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVK----------------KMLEEWKPDFVI 65 (277)
T ss_pred EEEEeccc----chHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHH----------------HHHHhhCCCEEE
Confidence 35556766 44555555543334566899999999864 343332211 1111 223 3
Q ss_pred EEEccCCCCCcHHHHHHHH-cCCcEEe-eCCCC---ccccccCCceEe
Q 008544 349 FLNPSTTDVVCTATAEALA-MGKIVVC-ANHPS---NDFFKQFPNCRT 391 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma-~G~PVI~-t~~~~---~e~v~~~~~g~~ 391 (562)
++.|.-.-.-|...-|.+. .|+|+|. +|.++ .+.+++..-|++
T Consensus 66 ~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYI 113 (277)
T PRK00994 66 VISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYI 113 (277)
T ss_pred EECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEE
Confidence 4444444456777777765 5777554 46666 466666677776
No 247
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=41.16 E-value=39 Score=34.77 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCCcHHHHHHHHcCCcEEeeCC-----------CC--ccccccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHH--hc
Q 008544 356 DVVCTATAEALAMGKIVVCANH-----------PS--NDFFKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQT--HQ 420 (562)
Q Consensus 356 E~~~~~~lEAma~G~PVI~t~~-----------~~--~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar--~~ 420 (562)
+..+-.+.++|+-++|-..+-. .. .|+.++....++++|.+++...+..+.++-....+++++ ++
T Consensus 235 ~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssKs~~kkdkR~qr 314 (427)
T KOG2842|consen 235 EALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSKSRAKKDRRVQR 314 (427)
T ss_pred cchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3444556666777777555421 11 566778888999999999999999999888775555444 32
Q ss_pred CCHHHHHHHHHHHHHhcCcccccCCCCCCccccccc---cchHHHHHHHHHH-hhhhhcccchhhhhhcCCCCCCCCChH
Q 008544 421 LSWESATERFLQVAELVGDVVTKRSKSPSRHLESES---LNSKRIIEDAFGY-LHYVASGFETSRRALGAIPGSLQPDEQ 496 (562)
Q Consensus 421 ~sw~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~l~~-~h~~~~g~~~~r~~~ga~~~~~~~~~~ 496 (562)
. +...+++..+ ....+....+-.+.....-+ ....+++...+.- +++.+.-.|.+|.+||-+|.+..++.+
T Consensus 315 ~----~fr~vl~~ie-e~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg~~~~~l~~~ 389 (427)
T KOG2842|consen 315 S----VFRDVLQTIE-ERDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLGGPPRALDAA 389 (427)
T ss_pred H----HHHHHHHHHh-cccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcCCCCCCcccc
Confidence 2 2233333333 11111111111111111111 1233444444443 666666799999999999877777665
Q ss_pred HHHH
Q 008544 497 LCKE 500 (562)
Q Consensus 497 ~~~~ 500 (562)
-.++
T Consensus 390 ~~~~ 393 (427)
T KOG2842|consen 390 FLKD 393 (427)
T ss_pred hhcc
Confidence 4443
No 248
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=40.35 E-value=42 Score=29.12 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=29.4
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCe-EEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERR-VTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~e-Vtvit~ 90 (562)
|||+|+.+.. |+.+-.+...+.+|..+.+.| |+ |.|+-.
T Consensus 1 m~~~iv~~~~-Py~~~~~~~al~~A~aa~~~g-h~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGP-AYGTQQASSAYQFAQALLAEG-HELVSVFFY 40 (128)
T ss_pred CEEEEEEcCC-CCCCHHHHHHHHHHHHHHhCC-CCeeEEEEe
Confidence 5788888764 775555677888999999998 98 477744
No 249
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=39.49 E-value=1.5e+02 Score=29.72 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChH--HHHhhcCEEEEc
Q 008544 287 GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHAD--PIFHDYKVFLNP 352 (562)
Q Consensus 287 g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~adv~v~p 352 (562)
..+...+|++.+.++.++..++++++ |.+.+++........+.+.......+ .++..||.+|.+
T Consensus 189 ~~~Yy~~Ai~~i~~~~~~~~f~ifSD--D~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iis 254 (298)
T PF01531_consen 189 DKDYYKKAIEYIREKVKNPKFFIFSD--DIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIIS 254 (298)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEEC
Confidence 45678899999988888999999997 55666665554443344444423333 578899988877
No 250
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=39.17 E-value=98 Score=28.84 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=46.7
Q ss_pred EEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCC-----------CCCcHHHHHHHHcCCcEEee
Q 008544 307 MDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTT-----------DVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 307 l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~-----------E~~~~~~lEAma~G~PVI~t 375 (562)
++.+|+..+...+++.++..+.++.++....+ ...+|.+++|.-. ..+--.+.|+...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 45566555677888888888887777655544 5678888888532 12334477778889999887
Q ss_pred CCC
Q 008544 376 NHP 378 (562)
Q Consensus 376 ~~~ 378 (562)
-.|
T Consensus 79 C~G 81 (194)
T cd01750 79 CGG 81 (194)
T ss_pred CHH
Confidence 554
No 251
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=38.81 E-value=3.3e+02 Score=28.89 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHH-HHHh---cCCcEEEEEeCCC----CHHHHHHHHHhcCCeeEEeC-------------------CCC
Q 008544 285 SKGYEELLGLLNI-YHKE---LAGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVYP-------------------GRD 337 (562)
Q Consensus 285 ~Kg~~~ll~a~~~-l~~~---~~~~~l~ivG~g~----~~~~l~~~~~~l~l~~~~~~-------------------~~~ 337 (562)
..|++..++++-+ +... ..+-++.++|... +.++++++.++.|+++.... +..
T Consensus 132 ~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~ 211 (428)
T cd01965 132 ETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGT 211 (428)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCC
Confidence 4688888777654 3221 1234577776532 46899999999999977643 234
Q ss_pred ChHHHHh--hcCEEEEccCCCCCcHHHHHHHH--cCCcEEeeCCC-CccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 338 HADPIFH--DYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 338 ~~~~l~~--~adv~v~pS~~E~~~~~~lEAma--~G~PVI~t~~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
..+++.+ .|.+-+..+ ..++..+.|+|. +|+|-+....+ |. +..+++.++|.+++..+
T Consensus 212 ~~e~i~~~~~A~lniv~~--~~~~~~~a~~L~e~~GiP~~~~~~p~G~------------~~t~~~l~~l~~~~g~~ 274 (428)
T cd01965 212 TLEEIRDAGNAKATIALG--EYSGRKAAKALEEKFGVPYILFPTPIGL------------KATDEFLRALSKLSGKP 274 (428)
T ss_pred cHHHHHHhccCcEEEEEC--hhhhHHHHHHHHHHHCCCeeecCCCcCh------------HHHHHHHHHHHHHHCCC
Confidence 5565555 444444332 235677788876 89999987653 21 35577777777777644
No 252
>PLN03007 UDP-glucosyltransferase family protein
Probab=38.79 E-value=37 Score=36.73 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=31.0
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeec
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPW 91 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~ 91 (562)
|+.++.||+++.-.. .|--.-.+.+|+.|+.+| ++||++++.
T Consensus 1 ~~~~~~hVvlvp~pa----~GHi~P~L~LAk~L~~rG-~~VT~vtt~ 42 (482)
T PLN03007 1 MNHEKLHILFFPFMA----HGHMIPTLDMAKLFSSRG-AKSTILTTP 42 (482)
T ss_pred CCCCCcEEEEECCCc----cccHHHHHHHHHHHHhCC-CEEEEEECC
Confidence 455567998886532 343444688999999998 999999883
No 253
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=38.74 E-value=1.8e+02 Score=29.74 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=31.0
Q ss_pred ChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 338 HADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 338 ~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
+.+++++++|+.++ |...|+ +.-..++.|--|.-+|-+..|+
T Consensus 193 ~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 193 DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 38899999997664 555555 6667888888888888776654
No 254
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=38.68 E-value=42 Score=30.29 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=26.1
Q ss_pred hcCEEEEccC------CCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 345 DYKVFLNPST------TDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 345 ~adv~v~pS~------~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+|++|+--+ ..|+.-.+.||++.|+||+++=..
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 4788887742 334677799999999999999554
No 255
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=38.39 E-value=2.1e+02 Score=29.98 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=54.1
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC----------CCChHHHHhhcCEEEE--ccCCC----C---CcHHHH
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG----------RDHADPIFHDYKVFLN--PSTTD----V---VCTATA 363 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~----------~~~~~~l~~~adv~v~--pS~~E----~---~~~~~l 363 (562)
.+-++-|+|-|.--..+.+.++.+|.++..+.. ..+.+++++.||+.++ |...| + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l 194 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFL 194 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHH
Confidence 356788899887667777777888887765432 2356689999996664 43332 2 566788
Q ss_pred HHHHcCCcEEeeCCCC
Q 008544 364 EALAMGKIVVCANHPS 379 (562)
Q Consensus 364 EAma~G~PVI~t~~~~ 379 (562)
+.|.-|.-+|-+..|.
T Consensus 195 ~~mk~gailIN~aRG~ 210 (381)
T PRK00257 195 ASLRPGAWLINASRGA 210 (381)
T ss_pred hcCCCCeEEEECCCCc
Confidence 8898888888876664
No 256
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=37.52 E-value=1.5e+02 Score=30.24 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=30.9
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.+++++.||+.++ |..-|+ ++-..++.|--|.-+|-+..|+
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 467899999997665 433333 6777888898888777776543
No 257
>PRK06849 hypothetical protein; Provisional
Probab=37.28 E-value=2e+02 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+++|+|..... ...+.+++.|.+.| |+|+++..
T Consensus 4 ~~~VLI~G~~~--------~~~l~iar~l~~~G-~~Vi~~d~ 36 (389)
T PRK06849 4 KKTVLITGARA--------PAALELARLFHNAG-HTVILADS 36 (389)
T ss_pred CCEEEEeCCCc--------HHHHHHHHHHHHCC-CEEEEEeC
Confidence 48898875432 24678899999998 99999965
No 258
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.04 E-value=55 Score=26.69 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=45.4
Q ss_pred EEEEeCCCC----HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHH--cCCcEEeeCCC
Q 008544 307 MDLYGNGED----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHP 378 (562)
Q Consensus 307 l~ivG~g~~----~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma--~G~PVI~t~~~ 378 (562)
|++.|.|-. ...+++.+++.|++..+ ..+..+..+....+|+++..... .+-..-++..+ .|+||+.-+..
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi-~~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQV-AYMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchH-HHHHHHHHHHhhhcCCCEEEeChh
Confidence 455566543 26778888888988777 45556666777889988776532 12333444443 47799987653
No 259
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=3.9e+02 Score=28.02 Aligned_cols=155 Identities=10% Similarity=0.158 Sum_probs=87.5
Q ss_pred EEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeC-CCC------HHHHHHHHHhcCCeeEEe-C----CCCChH---HH
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-GED------FDQIQRAAKKLKLVVRVY-P----GRDHAD---PI 342 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-g~~------~~~l~~~~~~l~l~~~~~-~----~~~~~~---~l 342 (562)
|.|.....+-.....+.+.+.+++ ++.++|+-. |.. .+++.+..+..+.+..++ . |+.-.+ ++
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 566666777777777777777766 566777644 222 245555555555443321 1 111111 22
Q ss_pred HhhcC--EEEEccC----CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc-CCceEe-----eCCHHHHHHHHHHHHhCC
Q 008544 343 FHDYK--VFLNPST----TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ-FPNCRT-----YDGRNGFVEATLKALAEE 409 (562)
Q Consensus 343 ~~~ad--v~v~pS~----~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~-~~~g~~-----~~d~~~la~~i~~ll~~~ 409 (562)
=...| ..|++-. .-|-.++.. .|.++|||--..|- -+-++. .+--|+ -.|.+.|.+.+.++..++
T Consensus 237 k~~vdvg~vIlTKlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d 314 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDD 314 (483)
T ss_pred HHhhccceEEEEecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 22334 3444421 122333444 46789999887764 232322 222333 259999999999999555
Q ss_pred CCCccHHHH-hcCCHHHHHHHHHHHHHh
Q 008544 410 PAQPTDAQT-HQLSWESATERFLQVAEL 436 (562)
Q Consensus 410 ~~~l~~~ar-~~~sw~~~~~~~~~~y~~ 436 (562)
...+-++-. -+|+.....+++..+...
T Consensus 315 ~~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 315 AKELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 555555444 678888888887776654
No 260
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=36.85 E-value=1e+02 Score=25.47 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCC--CHHHHHHHHHhcCCeeE
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGE--DFDQIQRAAKKLKLVVR 331 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~--~~~~l~~~~~~l~l~~~ 331 (562)
...+.++.+.+|+.+++++|+.. |.+-..+.+++....+.
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ 93 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRIL 93 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEE
Confidence 44566666889999999999833 35777777777765543
No 261
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=36.71 E-value=84 Score=25.89 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=45.4
Q ss_pred EEEEeCCCC----HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEccCCCCCcHHHHH--HHHcCCcEEeeCC
Q 008544 307 MDLYGNGED----FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAE--ALAMGKIVVCANH 377 (562)
Q Consensus 307 l~ivG~g~~----~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE--Ama~G~PVI~t~~ 377 (562)
+++.|.|-. .+.+++.+++.|+++.+. .+..+.++....+|+++..... .|-..-++ +-..|+||...+.
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv-~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQM-ASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChH-HHHHHHHHHHhhhcCCCEEEeCH
Confidence 445566643 378889999999987774 4466677788899987766432 12222222 3445889988764
No 262
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=36.49 E-value=71 Score=26.03 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred EEEEeCCCC----HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHH--HHHcCCcEEeeCCC
Q 008544 307 MDLYGNGED----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAE--ALAMGKIVVCANHP 378 (562)
Q Consensus 307 l~ivG~g~~----~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lE--Ama~G~PVI~t~~~ 378 (562)
+++.|.|-. .+.+++.+++.|++..+ ..+..+..+....+|+++..... .+-..-++ +.-.++||..-+..
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv-~~~~~~i~~~~~~~~~pv~~I~~~ 80 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQV-RYMLDEVKKKAAEYGIPVAVIDMM 80 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhH-HHHHHHHHHHhccCCCcEEEcChH
Confidence 456666644 36778888888988777 45556666777899977766432 22233333 34578999888653
No 263
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=36.47 E-value=2.2e+02 Score=29.07 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=50.3
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC--------------CCChHHHHhhcCEEEE--ccCCCCCcH---HHHH
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG--------------RDHADPIFHDYKVFLN--PSTTDVVCT---ATAE 364 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~--------------~~~~~~l~~~adv~v~--pS~~E~~~~---~~lE 364 (562)
+-++-|+|-|.--..+-+.++.+|.++..+.. .++.+++++.||++++ |.+-|+-++ ..+.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 34556666655455555555555655444322 3557799999997764 556666444 4555
Q ss_pred HHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 365 ALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 365 Ama~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
.|--|.-.|-+..|+ ++ |.++|.++++.
T Consensus 222 ~MK~gailIN~aRG~--vV----------de~aL~~AL~~ 249 (324)
T COG0111 222 KMKPGAILINAARGG--VV----------DEDALLAALDS 249 (324)
T ss_pred hCCCCeEEEECCCcc--ee----------cHHHHHHHHHc
Confidence 555555444333322 22 55666666654
No 264
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.12 E-value=2.6e+02 Score=24.57 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=49.5
Q ss_pred cCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeC-CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEE
Q 008544 302 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYP-GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVV 373 (562)
Q Consensus 302 ~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~-~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI 373 (562)
..+-+++++|.+.. .+.+..+..+.+..+.... ...+.++..++||+.+...-.. ++.--|-+.-|.-||
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi 97 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE
Confidence 45678999998765 4566666666677776643 3457789999999999876433 345567777787777
No 265
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=35.62 E-value=74 Score=27.99 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhhc----C-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+++++..+.++....+-+ +.++++ | +.++|--+--.+.++.+|++ .++|+|---.. .+|
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~ 110 (140)
T cd00466 31 ALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRH 110 (140)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 455666667777777765533333 444433 4 77888766667899999964 68898865332 233
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.+.. -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 111 HSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred ccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 344556667764 6677777776655
No 266
>PRK06436 glycerate dehydrogenase; Provisional
Probab=35.08 E-value=2.1e+02 Score=28.88 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=28.0
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~ 377 (562)
.+.+++++.+|+.++ |...|+ ++-..+++|--|.-+|-+..
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCC
Confidence 467799999997765 333333 56678888877766665544
No 267
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=34.74 E-value=5.4e+02 Score=27.24 Aligned_cols=112 Identities=19% Similarity=0.192 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHH-HHHh---cCCcEEEEEeCC--------CCHHHHHHHHHhcCCeeEE-eCCCCChHHHHh--hcCE
Q 008544 284 WSKGYEELLGLLNI-YHKE---LAGLEMDLYGNG--------EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYKV 348 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~-l~~~---~~~~~l~ivG~g--------~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~--~adv 348 (562)
...|++..++++-+ +..+ .++-.+-|+|.- .+.++++++.+..|+++.. +......+++-+ .|.+
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~ 210 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQF 210 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 35788887777654 3221 223457777741 3458899999999999865 555556776655 4454
Q ss_pred EEEccCCCCCcHHHHHHH--HcCCcEEeeC-CC-CccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 349 FLNPSTTDVVCTATAEAL--AMGKIVVCAN-HP-SNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAm--a~G~PVI~t~-~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
-+..+.. .+....+.| -+|.|.+..+ .| | .++.+++.+.|.+++..+
T Consensus 211 niv~~~~--~g~~~a~~L~~~~giP~i~~~~~P~G------------~~~t~~~l~~i~~~~g~~ 261 (427)
T cd01971 211 NLVLSPW--VGLEFAQHLEEKYGQPYIHSPTLPIG------------AKATAEFLRQVAKFAGIE 261 (427)
T ss_pred EEEEcHh--hHHHHHHHHHHHhCCceEecCCCccC------------HHHHHHHHHHHHHHhCCC
Confidence 4444322 356677777 4799998875 32 2 135677777887777644
No 268
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=34.35 E-value=1.5e+02 Score=23.41 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=44.5
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcC---CcEEEEEeCCCCHHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEE
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELA---GLEMDLYGNGEDFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVF 349 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~---~~~l~ivG~g~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~ 349 (562)
+++++...- +-......++.+.++.++++ +++++.+...++.++.++..++.+..... .........+.+.+++-
T Consensus 3 ~~ll~fwa~-~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 3 PVLLYFWAS-WCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp EEEEEEE-T-TSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred EEEEEEECC-CCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 445544442 22224555666666666655 89999999887788999998888554332 22222234666666643
Q ss_pred EEc
Q 008544 350 LNP 352 (562)
Q Consensus 350 v~p 352 (562)
-.|
T Consensus 82 ~iP 84 (95)
T PF13905_consen 82 GIP 84 (95)
T ss_dssp SSS
T ss_pred cCC
Confidence 333
No 269
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=33.41 E-value=98 Score=27.26 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhh----cC-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Cccc---
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD----YK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SNDF--- 382 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~----ad-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e~--- 382 (562)
+.+++.+.++|+.+.++....+-+ +.+++ +| +.++|--+-..+.++.+|++ .++|+|---.. .+|-
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~ 111 (140)
T PF01220_consen 32 QKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRH 111 (140)
T ss_dssp HHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 456666777777777765433333 44443 45 77889777678999999976 57898865332 2433
Q ss_pred ---cccCCceEeeC-CHHHHHHHHHHHH
Q 008544 383 ---FKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 383 ---v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
+.....|.+.. -.+...-+++.++
T Consensus 112 ~S~~s~~~~g~I~G~G~~gY~lAl~al~ 139 (140)
T PF01220_consen 112 HSVISPVAVGVISGFGADGYLLALEALV 139 (140)
T ss_dssp --SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccccEEEEEeCCHHHHHHHHHHHh
Confidence 34455677764 5566666665543
No 270
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=33.09 E-value=1.5e+02 Score=31.74 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHH
Q 008544 285 SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTAT 362 (562)
Q Consensus 285 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~ 362 (562)
.+|++.+.+...+++ .+.+.+.+......+++.....+....++.|.+...++... +|++|..-..-.--.+.
T Consensus 92 g~Ni~lL~~q~~~f~-----p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pT 166 (454)
T PLN02696 92 GSNVTLLADQVRKFK-----PKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPT 166 (454)
T ss_pred CCCHHHHHHHHHHhC-----CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccchHHH
Confidence 457777777665443 23556665333344444332111134566777777777774 58888875432223446
Q ss_pred HHHHHcCCcEEeeCC
Q 008544 363 AEALAMGKIVVCANH 377 (562)
Q Consensus 363 lEAma~G~PVI~t~~ 377 (562)
++|+.+|+.|...+-
T Consensus 167 l~AIkaGK~VALANK 181 (454)
T PLN02696 167 VAAIEAGKDIALANK 181 (454)
T ss_pred HHHHHCCCcEEEecH
Confidence 999999999888765
No 271
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=31.91 E-value=78 Score=26.04 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=24.2
Q ss_pred HHHhhcCEEEEccCCCCC-cHHHHHHHHcCCcEEeeCCCC
Q 008544 341 PIFHDYKVFLNPSTTDVV-CTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 341 ~l~~~adv~v~pS~~E~~-~~~~lEAma~G~PVI~t~~~~ 379 (562)
+.+..+++++...-.+.. .....+|-+.|+||-+.|.+.
T Consensus 56 ~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~ 95 (103)
T PF13241_consen 56 EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPE 95 (103)
T ss_dssp GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CC
T ss_pred HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcC
Confidence 456778877766543333 334455666999999999875
No 272
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=31.19 E-value=74 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=33.2
Q ss_pred hhccCCeEEEEeccc----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 45 MDRKQQHIAIFTTAS----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 45 m~~~~~rI~ivt~~~----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
|+.+++++|+|-... .+...|+..-...+++.|.+.| ++|++..
T Consensus 3 m~~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lg-F~V~~~~ 50 (241)
T smart00115 3 MNSKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLG-YEVHVKN 50 (241)
T ss_pred CCCCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCC-CEEEEec
Confidence 777778877776332 3456787777888889999998 9999873
No 273
>PLN00016 RNA-binding protein; Provisional
Probab=31.10 E-value=73 Score=33.11 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=28.3
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.+++|+|+++.+ ||++.-=..+++.|.++| |+|++++.
T Consensus 51 ~~~~VLVt~~~~----GatG~iG~~lv~~L~~~G-~~V~~l~R 88 (378)
T PLN00016 51 EKKKVLIVNTNS----GGHAFIGFYLAKELVKAG-HEVTLFTR 88 (378)
T ss_pred ccceEEEEeccC----CCceeEhHHHHHHHHHCC-CEEEEEec
Confidence 346898875544 454555567889999998 99999976
No 274
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.92 E-value=4.7e+02 Score=24.79 Aligned_cols=62 Identities=11% Similarity=-0.086 Sum_probs=33.8
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
.+|.++..+..+...-.+-++...|+|||.-+....+ .....+..++.+....+...+++..
T Consensus 55 ~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~g 116 (268)
T cd06289 55 GVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISLG 116 (268)
T ss_pred CCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHCC
Confidence 4675555433222122456677889999998654221 1122233456666666666666554
No 275
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=30.91 E-value=83 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=22.5
Q ss_pred CeEEEEecccCCCcc-cc-cccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLT-GT-AVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~-G~-a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|||+|+-+.- .+ -+ .-.++.++.+-.++| |+|.++.+
T Consensus 1 Mki~fvmDpi---~~i~~~kDTT~alm~eAq~RG-hev~~~~~ 39 (119)
T PF02951_consen 1 MKIAFVMDPI---ESIKPYKDTTFALMLEAQRRG-HEVFYYEP 39 (119)
T ss_dssp -EEEEEES-G---GG--TTT-HHHHHHHHHHHTT--EEEEE-G
T ss_pred CeEEEEeCCH---HHCCCCCChHHHHHHHHHHCC-CEEEEEEc
Confidence 6899998733 21 11 124566777888887 99999987
No 276
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=30.75 E-value=6.3e+02 Score=26.21 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeC-----------CCC---HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEE
Q 008544 286 KGYEELLGLLNIYHKELAGLEMDLYGN-----------GED---FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFL 350 (562)
Q Consensus 286 Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~---~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v 350 (562)
...+.+++.+..++.. .++++..|. |.. ...+.+.+++.|+.+.- .....+++.+...+|++-
T Consensus 129 E~~~~~~~~A~~lk~~--g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lk 206 (360)
T PRK12595 129 ESYEQVEAVAKALKAK--GLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQ 206 (360)
T ss_pred cCHHHHHHHHHHHHHc--CCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEE
Confidence 4566777777777654 455555553 111 25677778888876544 233445555556689999
Q ss_pred EccCCCCCcHHHHHHHH-cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 351 NPSTTDVVCTATAEALA-MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma-~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
.+|. +..-..++++++ .|+||+.+..-+ .+.+++..+++.+.+..
T Consensus 207 I~s~-~~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~G 252 (360)
T PRK12595 207 IGAR-NMQNFELLKAAGRVNKPVLLKRGLS-------------ATIEEFIYAAEYIMSQG 252 (360)
T ss_pred ECcc-cccCHHHHHHHHccCCcEEEeCCCC-------------CCHHHHHHHHHHHHHCC
Confidence 9985 233456666655 699999997632 37788888888887643
No 277
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.55 E-value=1.7e+02 Score=31.68 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCc
Q 008544 153 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNY 197 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~ 197 (562)
..+.+.+.+||||.+-+.....-.. .+.-+...+ -|..++|++.
T Consensus 319 ~LRa~LRqDPDvImVGEIRD~ETAe-iavqAalTGHLVlSTlHtnd 363 (500)
T COG2804 319 ALRAILRQDPDVIMVGEIRDLETAE-IAVQAALTGHLVLSTLHTND 363 (500)
T ss_pred HHHHHhccCCCeEEEeccCCHHHHH-HHHHHHhcCCeEeeecccCc
Confidence 4455566799999988764442111 122233334 4889999984
No 278
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=30.55 E-value=1.4e+02 Score=31.22 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=57.8
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcH
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCT 360 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~ 360 (562)
.-.+|++.|.+.+.+++. +.+.+++......++....+.+.+.+++.|.+...++.. .+|+.|+....-.-=.
T Consensus 34 aa~~n~~~L~~q~~~f~p-----~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 108 (389)
T TIGR00243 34 SAGKNVALMVEQILEFRP-----KFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVGAAGLL 108 (389)
T ss_pred EcCCCHHHHHHHHHHcCC-----CEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 346799999888866542 456666543345555443211333567777777777776 4589888754322234
Q ss_pred HHHHHHHcCCcEEeeCC
Q 008544 361 ATAEALAMGKIVVCANH 377 (562)
Q Consensus 361 ~~lEAma~G~PVI~t~~ 377 (562)
+.++|+.+|+.+--.+-
T Consensus 109 pt~~Ai~~gk~iaLANK 125 (389)
T TIGR00243 109 PTLAAIRAGKTIALANK 125 (389)
T ss_pred HHHHHHHCCCcEEEech
Confidence 68999999998777654
No 279
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=30.49 E-value=1.8e+02 Score=28.45 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 336 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
..+.++++..+|+.+.-|..+...-.+..|+..|+|||+...+
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4677777888999987666566666788899999999977543
No 280
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=30.38 E-value=3.5e+02 Score=24.74 Aligned_cols=41 Identities=12% Similarity=0.245 Sum_probs=23.8
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCC
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTN 196 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~ 196 (562)
.+.+.+++.+||++++.+.... + ...+....+.-+..+|..
T Consensus 70 ~~~~~l~~~~~Dl~v~~~~~~i--l--~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 70 ELLELLESLNPDLIVVAGYGRI--L--PKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHTT-SEEEESS-SS-------HHHHHHSTTSEEEEESS
T ss_pred HHHHHHHhhccceeehhhhHHH--h--hhhhhhcccccEEEEeec
Confidence 4677888899999988765433 2 223445545446677755
No 281
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=30.12 E-value=1e+02 Score=23.18 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=43.4
Q ss_pred CCcEEEEEeCCC-CHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 303 AGLEMDLYGNGE-DFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 303 ~~~~l~ivG~g~-~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
.+..+.+.|... .+++++++++.+|..+ ....-...+.+|.... ........+|.+.|+|+|..+
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v--------~~~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTV--------SNSFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEE--------ESSSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEE--------EeecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 467788833322 3688999999988654 2223345566665543 234667999999999999764
No 282
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=29.83 E-value=1.1e+02 Score=26.40 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=25.7
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|||++..+.. +.......+.+.|.+.| ++|.++.+
T Consensus 1 k~i~l~vtGs-----~~~~~~~~~l~~L~~~g-~~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGS-----IAAYKAPDLLRRLKRAG-WEVRVVLS 35 (129)
T ss_dssp -EEEEEE-SS-----GGGGGHHHHHHHHHTTT-SEEEEEES
T ss_pred CEEEEEEECH-----HHHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 5788877754 22555788889999997 99999976
No 283
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=29.68 E-value=3.1e+02 Score=26.73 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=55.6
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC------HHHHHHHHHhcCCeeEEeCC----CCChHHHHh
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED------FDQIQRAAKKLKLVVRVYPG----RDHADPIFH 344 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~------~~~l~~~~~~l~l~~~~~~~----~~~~~~l~~ 344 (562)
.++|+|-+.-.-|...+-+-++.++.++ .+.|+|+..... -++.-+...+.|.++.-+|. ..+.-+++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhh
Confidence 4789999999999999999999999887 678888875211 13333333455765444554 334448888
Q ss_pred hcCEEEEccC
Q 008544 345 DYKVFLNPST 354 (562)
Q Consensus 345 ~adv~v~pS~ 354 (562)
.++.+|-|..
T Consensus 81 ~~~~ilRP~N 90 (266)
T COG1692 81 NADRILRPAN 90 (266)
T ss_pred cccceeccCC
Confidence 9999998864
No 284
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=29.58 E-value=76 Score=31.15 Aligned_cols=38 Identities=32% Similarity=0.338 Sum_probs=27.7
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecC
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 92 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~ 92 (562)
++|||++..+-... +-.+..|++.|.+.| +|+|++|..
T Consensus 4 ~~M~ILltNDDGi~-----a~Gi~aL~~~l~~~g--~V~VvAP~~ 41 (257)
T PRK13932 4 KKPHILVCNDDGIE-----GEGIHVLAASMKKIG--RVTVVAPAE 41 (257)
T ss_pred CCCEEEEECCCCCC-----CHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 45899988875432 334777888998876 799999843
No 285
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=29.45 E-value=2.4e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.208 Sum_probs=44.8
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+++++.+-+ .+.+..++.++..+. . .+.+.++++..+|+.+..+..+...--..+++..|+.||+...+
T Consensus 26 ~~elv~v~d-~~~~~a~~~a~~~~~--~---~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~g 94 (265)
T PRK13304 26 NAELYAFYD-RNLEKAENLASKTGA--K---ACLSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVG 94 (265)
T ss_pred CeEEEEEEC-CCHHHHHHHHHhcCC--e---eECCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchH
Confidence 566655544 345555555554442 1 23567777788999888765555555567788999999986553
No 286
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=29.29 E-value=4.5e+02 Score=24.31 Aligned_cols=105 Identities=5% Similarity=-0.022 Sum_probs=59.8
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCC-eeE-EeCCCCChHHHHh--hcCEEEEccC-CC---CCcHHHHHHHH---cCCcE
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKL-VVR-VYPGRDHADPIFH--DYKVFLNPST-TD---VVCTATAEALA---MGKIV 372 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l-~~~-~~~~~~~~~~l~~--~adv~v~pS~-~E---~~~~~~lEAma---~G~PV 372 (562)
.+++++.+.+. ...++...+..+. .+. ......+..+.+. ..|++++-.. .+ .-|..+++.+. -++||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~i 83 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSI 83 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcE
Confidence 56677766443 3455555544332 111 1222222223333 3687776533 22 25677777764 34566
Q ss_pred Eee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 373 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 373 I~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
|.- +... .+.+..|..|++.. +++++.++|..++...
T Consensus 84 Ivls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~ 127 (216)
T PRK10840 84 IVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred EEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCC
Confidence 554 4433 35577888999974 7999999999887643
No 287
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.29 E-value=4.8e+02 Score=24.41 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=34.5
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEe-eCCHHHHHHHHHHHHhC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALAE 408 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~-~~d~~~la~~i~~ll~~ 408 (562)
.+|.++....... ...+-++...|+|||+.+....+ ....++ .++.+....+...+.+.
T Consensus 55 ~~d~iii~~~~~~-~~~~~~~~~~~ipvv~~~~~~~~----~~~~~v~~d~~~~g~~~~~~l~~~ 114 (264)
T cd06267 55 RVDGIILAPSRLD-DELLEELAALGIPVVLVDRPLDG----LGVDSVGIDNRAGAYLAVEHLIEL 114 (264)
T ss_pred CcCEEEEecCCcc-hHHHHHHHHcCCCEEEecccccC----CCCCEEeeccHHHHHHHHHHHHHC
Confidence 5676666544322 22277888999999999876432 122223 35555555555555543
No 288
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.10 E-value=1.9e+02 Score=26.45 Aligned_cols=16 Identities=19% Similarity=-0.029 Sum_probs=8.0
Q ss_pred HHHHHHHHcCCcEEee
Q 008544 360 TATAEALAMGKIVVCA 375 (562)
Q Consensus 360 ~~~lEAma~G~PVI~t 375 (562)
.+.--|-.+|.|.+--
T Consensus 134 ~~~~~A~~~gl~~v~i 149 (176)
T PF06506_consen 134 VVCRLARKLGLPGVLI 149 (176)
T ss_dssp HHHHHHHHTTSEEEES
T ss_pred HHHHHHHHcCCcEEEE
Confidence 3444445556655444
No 289
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=29.09 E-value=3e+02 Score=27.43 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=31.3
Q ss_pred CCCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHH--cCCcEEee
Q 008544 335 GRDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--MGKIVVCA 375 (562)
Q Consensus 335 ~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--~G~PVI~t 375 (562)
...++.+.++ ..|++|-.|. ...|.-.+++.|+ |-.|+|-.
T Consensus 93 ~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 93 EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3457778888 7799999885 4558888888888 56777766
No 290
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=28.93 E-value=2.3e+02 Score=27.84 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHH--cCCcEEee
Q 008544 336 RDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--MGKIVVCA 375 (562)
Q Consensus 336 ~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--~G~PVI~t 375 (562)
..++.+.++ ..|++|-.|. .-.|.--++++|+ |-.|+|-.
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 356778888 8899999887 4458888999998 56788876
No 291
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=28.73 E-value=2.1e+02 Score=25.18 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhhc-----CEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Cccccc-
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY-----KVFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SNDFFK- 384 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~a-----dv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e~v~- 384 (562)
+.+++.+.+++.++.++....+-+ +.++++ ++.++|--+-..+.++.+|++ ..+|+|---.. .+|.+.
T Consensus 32 ~~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRh 111 (146)
T COG0757 32 ADLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRH 111 (146)
T ss_pred HHHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhcccccc
Confidence 556666777777777765433332 444432 389999887788999999964 57899865332 244443
Q ss_pred -----cCCceEeeC-CHHHHHHHHHHHH
Q 008544 385 -----QFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 385 -----~~~~g~~~~-d~~~la~~i~~ll 406 (562)
+-..|.++. -+....-++..+.
T Consensus 112 hS~~s~~a~GvI~GlG~~GY~lAl~~l~ 139 (146)
T COG0757 112 HSYTSPVAKGVICGLGAQGYLLALRALV 139 (146)
T ss_pred cccccchhceeEecCcHHHHHHHHHHHH
Confidence 344566664 5555555555443
No 292
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.72 E-value=2.7e+02 Score=26.11 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=30.2
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.+||+|++...... + +..+...+...|..+|-..
T Consensus 70 ~l~~~l~~~~~dlvvLAGyMrI--L--~~~fl~~~~grIlNIHPSL 111 (200)
T COG0299 70 ALVEALDEYGPDLVVLAGYMRI--L--GPEFLSRFEGRILNIHPSL 111 (200)
T ss_pred HHHHHHHhcCCCEEEEcchHHH--c--CHHHHHHhhcceEecCccc
Confidence 4777888999999998876443 3 4446666666777888553
No 293
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=28.52 E-value=90 Score=26.12 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC----HHHHHHHHHhcCCeeEEe
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVY 333 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~l~l~~~~~ 333 (562)
.+.+..+....|+..++++|.|.. .+++++..++.|+.+.+.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 344555556677889999999876 478888888888877764
No 294
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.26 E-value=2.4e+02 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=28.0
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.+||+|++...... + ...+...+...+..+|...
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i--l--~~~~l~~~~~~iiNiHpSL 197 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYMQI--L--SPDFVARFPGRIINIHHSF 197 (286)
T ss_pred HHHHHHHHhCCCEEEEecchhh--c--CHHHHhhccCCceecCccc
Confidence 3567788899999998875433 2 2335555555677888653
No 295
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=27.46 E-value=3.5e+02 Score=24.64 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEE-eCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc
Q 008544 290 ELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 368 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 368 (562)
.-++.+..+++++|+.++.++ |. +....+..+ .+.+++++.+.+++.|...+--++.+-|.++.
T Consensus 84 yT~~tl~~l~~~~p~~~~~~iiG~-D~l~~l~~W--------------~~~~~i~~~~~l~~~~~~~~ISST~IR~~l~~ 148 (174)
T PRK08887 84 TTYALLTRLQELYPEADLTFVIGP-DNFLKFAKF--------------YKADEITQRWTVMACPEKVPIRSTDIRNALQN 148 (174)
T ss_pred chHHHHHHHHHHCCCCeEEEEEcc-chHHHHHHh--------------CCHHHHHhhCeEEEeCCCCCcCHHHHHHHHHc
Confidence 345566666677887665443 54 334444433 24567888899888886566677778888887
Q ss_pred CCc
Q 008544 369 GKI 371 (562)
Q Consensus 369 G~P 371 (562)
|.+
T Consensus 149 g~~ 151 (174)
T PRK08887 149 GKD 151 (174)
T ss_pred CCC
Confidence 765
No 296
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.44 E-value=3.6e+02 Score=26.47 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||+++ +||+. -..+++.|.+.| |+|++.+..........-.+........-..+.
T Consensus 1 m~ILvl--------GGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~-------------- 56 (256)
T TIGR00715 1 MTVLLM--------GGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLYPIHQALTVHTGALDPQE-------------- 56 (256)
T ss_pred CeEEEE--------echHH-HHHHHHHHHhCC-CeEEEEEccCCccccccccCCceEEECCCCHHH--------------
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCc-EEEecCCchhhhhhchHHHHhhcC-CEEEE
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEAD-IAVLEEPEHLTWFHHGKRWKAKFR-FVVGI 192 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pD-vV~~~~~~~~~~~~~~~~~~~~~~-~vi~~ 192 (562)
+..++++.++| ||...+|+....-..+...+...+ |.+-.
T Consensus 57 -----------------------l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 57 -----------------------LREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred -----------------------HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
No 297
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.33 E-value=2.7e+02 Score=27.89 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.++|++++...... + ...+...+...+..+|...
T Consensus 160 ~~~~~l~~~~~Dlivlagym~i--l--~~~~l~~~~~~iiNiHpSl 201 (289)
T PRK13010 160 QILDLIETSGAELVVLARYMQV--L--SDDLSRKLSGRAINIHHSF 201 (289)
T ss_pred HHHHHHHHhCCCEEEEehhhhh--C--CHHHHhhccCCceeeCccc
Confidence 3667788899999988865443 2 2335555555677788553
No 298
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.04 E-value=3.2e+02 Score=27.66 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=27.9
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+-..++-..+||. |-.+|-++....+.+++.+.- ...++|-
T Consensus 120 ~~~~~~GLILVTG---pTGSGKSTTlAamId~iN~~~--~~HIlTI 160 (353)
T COG2805 120 LAESPRGLILVTG---PTGSGKSTTLAAMIDYINKHK--AKHILTI 160 (353)
T ss_pred HHhCCCceEEEeC---CCCCcHHHHHHHHHHHHhccC--CcceEEe
Confidence 4456566666665 666777777778889998854 5566655
No 299
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=26.85 E-value=62 Score=32.69 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=25.9
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|+..+|||+|+.... +|+ .++..|++.| |+|+++..
T Consensus 1 ~~~~~m~I~IiG~Ga---iG~------~lA~~L~~~g-~~V~~~~r 36 (313)
T PRK06249 1 MDSETPRIGIIGTGA---IGG------FYGAMLARAG-FDVHFLLR 36 (313)
T ss_pred CCCcCcEEEEECCCH---HHH------HHHHHHHHCC-CeEEEEEe
Confidence 344458999996532 233 5778888887 99999976
No 300
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=26.83 E-value=2.9e+02 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=24.8
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEe
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
+..+.+..+|++|..|..-.|+-..++.|+ ..|+|.
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCCCCHHHHHhhC-CCCEEE
Confidence 455677889999998863346656778776 445554
No 301
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=26.78 E-value=3e+02 Score=29.10 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=29.6
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.+++++.||+.++ |...|+ ++-..++.|--|.-+|-+..|+
T Consensus 195 ~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 195 GSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred CCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 467899999997664 333333 6666788887787777776553
No 302
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.56 E-value=2.6e+02 Score=26.26 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=25.6
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.+||++++...... + ...+....+..+..+|...
T Consensus 71 ~~~~~l~~~~~D~iv~~~~~~i--i--~~~~l~~~~~~~iNiHpsl 112 (200)
T PRK05647 71 ALVEALDAYQPDLVVLAGFMRI--L--GPTFVSAYEGRIINIHPSL 112 (200)
T ss_pred HHHHHHHHhCcCEEEhHHhhhh--C--CHHHHhhccCCEEEEeCcc
Confidence 3566777889999987654332 2 1224444444577888664
No 303
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=26.50 E-value=2.9e+02 Score=28.69 Aligned_cols=109 Identities=16% Similarity=0.183 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHHHHHh------cCCcEEEEEeCCC----CHHHHHHHHHhcCCeeEEe-CCCCChHHHHh--hcCEEE
Q 008544 284 WSKGYEELLGLLNIYHKE------LAGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVY-PGRDHADPIFH--DYKVFL 350 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~------~~~~~l~ivG~g~----~~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~--~adv~v 350 (562)
+..|++..++++.+.... ...-.+.++|.-+ +..+++++.+..|+++... ..-...+++-+ .|++-+
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 456888888777654332 1234678888643 5689999999999998764 44466665555 555555
Q ss_pred EccCCCCCcHHHHHHHH--cCCcEEeeCCC-CccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 351 NPSTTDVVCTATAEALA--MGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma--~G~PVI~t~~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
..+. -++..+.|.|. +|.|.+... + |. +..+.+.+.|.+++.
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~-p~G~------------~~t~~~l~~i~~~~g 250 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILIN-PIGL------------EATDAFLRKLAELFG 250 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeC-CcCH------------HHHHHHHHHHHHHhC
Confidence 4443 24677777774 899988876 3 21 245667777777665
No 304
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=26.42 E-value=4.8e+02 Score=24.39 Aligned_cols=107 Identities=8% Similarity=0.026 Sum_probs=58.7
Q ss_pred HHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEe
Q 008544 295 LNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 295 ~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
+..|.+. +.+++++.. ...+++.+.+... .+.+.. ..-.+..+..+|+++..+-.+.....+.+....|.+|-+
T Consensus 26 a~~Ll~~--ga~V~VIs~-~~~~~l~~l~~~~--~i~~~~-~~~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~ 99 (202)
T PRK06718 26 AITLLKY--GAHIVVISP-ELTENLVKLVEEG--KIRWKQ-KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNV 99 (202)
T ss_pred HHHHHHC--CCeEEEEcC-CCCHHHHHHHhCC--CEEEEe-cCCChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEE
Confidence 4444444 356777754 2345566665542 233322 222234577899888877666666677777688999888
Q ss_pred eCCCC------ccccccCCceEeeC---CHHHHHHHHHHHHh
Q 008544 375 ANHPS------NDFFKQFPNCRTYD---GRNGFVEATLKALA 407 (562)
Q Consensus 375 t~~~~------~e~v~~~~~g~~~~---d~~~la~~i~~ll~ 407 (562)
.|.+. +.++..+.--+-+. ..-.++..|.+-++
T Consensus 100 ~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie 141 (202)
T PRK06718 100 ITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELE 141 (202)
T ss_pred CCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHH
Confidence 87753 34444433322231 33455555555443
No 305
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.24 E-value=51 Score=24.10 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCcEEee
Q 008544 360 TATAEALAMGKIVVCA 375 (562)
Q Consensus 360 ~~~lEAma~G~PVI~t 375 (562)
-.+.|++.+|.||++-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4689999999999985
No 306
>PRK07574 formate dehydrogenase; Provisional
Probab=26.24 E-value=3.8e+02 Score=28.06 Aligned_cols=43 Identities=9% Similarity=0.032 Sum_probs=29.9
Q ss_pred CCChHHHHhhcCEEEEc--cCCCC---CcHHHHHHHHcCCcEEeeCCC
Q 008544 336 RDHADPIFHDYKVFLNP--STTDV---VCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~p--S~~E~---~~~~~lEAma~G~PVI~t~~~ 378 (562)
..+.+++++.||+.++- ...|+ ++-..++.|.-|.-+|-+..|
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 286 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARG 286 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCC
Confidence 35678999999977653 33333 566788888888777766554
No 307
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=26.04 E-value=4e+02 Score=24.08 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccC
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPST 354 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~ 354 (562)
++.++...-...+-+.+++|.+.. -.-+..+..+.+..+.. +....+.++..++||+.|...-
T Consensus 24 i~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 24 IELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp HHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SS
T ss_pred HHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeec
Confidence 344433333345678999998764 45566666666777776 4446788899999999998753
No 308
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=25.73 E-value=2.5e+02 Score=28.74 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=28.7
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.++++..+|++++ |...++ +.-..++.|.-|..+|.+..|.
T Consensus 190 ~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 190 DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred CCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 467789999996654 444333 4555677777788777776643
No 309
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=25.54 E-value=98 Score=30.02 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.8
Q ss_pred hhccCCeEEEEecc--c---CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 45 MDRKQQHIAIFTTA--S---LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 45 m~~~~~rI~ivt~~--~---~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
|+..++++|+|-.. | .+...|+..-...+++.|.+.| ++|++..
T Consensus 4 m~~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lg-F~V~~~~ 52 (243)
T cd00032 4 MNSKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLG-YEVEVKN 52 (243)
T ss_pred CCCCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCC-CEEEEeC
Confidence 66655677666633 3 3456787777888889999998 9998873
No 310
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=25.40 E-value=1.6e+02 Score=28.72 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHHHhc--CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh
Q 008544 292 LGLLNIYHKEL--AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH 344 (562)
Q Consensus 292 l~a~~~l~~~~--~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~ 344 (562)
.++|++++.++ |+++++.+|+|.+.+ +.++.++....-+....+...++.
T Consensus 216 ~~cFe~I~~Rfg~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~~h~Dl~~l~~ 267 (274)
T TIGR01658 216 LQCFKWIKERFGHPKVRFCAIGDGWEEC---TAAQAMNWPFVKIDLHPDSSHRFP 267 (274)
T ss_pred HHHHHHHHHHhCCCCceEEEeCCChhHH---HHHHhcCCCeEEeecCCCHHHhCc
Confidence 34666666654 589999999997654 345666665333344455554444
No 311
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.19 E-value=3.4e+02 Score=27.11 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 153 ITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
+.+.+++.++|++++...... + ...+...+...+..+|-..
T Consensus 157 ~~~~l~~~~~Dlivlagy~~i--l--~~~~l~~~~~~iiNiHpSL 197 (286)
T PRK13011 157 VLDVVEESGAELVVLARYMQV--L--SPELCRKLAGRAINIHHSF 197 (286)
T ss_pred HHHHHHHhCcCEEEEeChhhh--C--CHHHHhhccCCeEEecccc
Confidence 566788899999988865433 3 2335555566677888553
No 312
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=25.16 E-value=1.1e+02 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.229 Sum_probs=23.3
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|||+|++.+. + -| ..++++..++| |+||-++.
T Consensus 1 mKIaiIgAsG--~-~G-----s~i~~EA~~RG-HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASG--K-AG-----SRILKEALKRG-HEVTAIVR 32 (211)
T ss_pred CeEEEEecCc--h-hH-----HHHHHHHHhCC-CeeEEEEe
Confidence 6899998743 1 12 24567788887 99999987
No 313
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=25.03 E-value=2.2e+02 Score=28.80 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=26.7
Q ss_pred CCChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCC
Q 008544 336 RDHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~ 377 (562)
..+.+++++.+|+.++ |...++ +.-..++.|--|.-+|-+..
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred cccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence 4567799999997765 333333 44456777777765555544
No 314
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=25.01 E-value=1.4e+02 Score=25.38 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHhcCCcEEEEEeCCCC----HHHHHHHHHhcCCeeEEe
Q 008544 286 KGYEELLGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVY 333 (562)
Q Consensus 286 Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~l~l~~~~~ 333 (562)
+.-++-.+.|..+.+..++++++++|.|.. ...++...+..++.+..+
T Consensus 51 ~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~M 102 (127)
T COG3737 51 TLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPM 102 (127)
T ss_pred ChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccc
Confidence 344455677777778889999999999876 377888888888776553
No 315
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.50 E-value=7.8e+02 Score=26.11 Aligned_cols=115 Identities=12% Similarity=0.115 Sum_probs=69.3
Q ss_pred ccCCHHHHHHHHHH-HHHh----cCCcEEEEEeCC----CCHHHHHHHHHhcCCeeEEeC------------------CC
Q 008544 284 WSKGYEELLGLLNI-YHKE----LAGLEMDLYGNG----EDFDQIQRAAKKLKLVVRVYP------------------GR 336 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~-l~~~----~~~~~l~ivG~g----~~~~~l~~~~~~l~l~~~~~~------------------~~ 336 (562)
...|++..++++-. +... ..+-.+-|+|.- ++.++++++.+++|+++..+. +-
T Consensus 135 ~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg 214 (435)
T cd01974 135 HITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGG 214 (435)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCC
Confidence 34688888877753 3221 112346566631 126899999999999987543 23
Q ss_pred CChHHHHhhcCEEEEccCCCCCcHHHHHHHH--cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 337 DHADPIFHDYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 337 ~~~~~l~~~adv~v~pS~~E~~~~~~lEAma--~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
...+++-+..+.-++.......+....+.|. +|+|.+....+. | ..+.++|.+.+.+++..+
T Consensus 215 ~~~~~i~~~~~A~~niv~~~~~~~~~a~~Le~~~giP~~~~~~p~---------G--~~~t~~~l~~l~~~~g~~ 278 (435)
T cd01974 215 TTLEELKDAGNAKATLALQEYATEKTAKFLEKKCKVPVETLNMPI---------G--VAATDEFLMALSELTGKP 278 (435)
T ss_pred CCHHHHHhhccCcEEEEECccccHHHHHHHHHHhCCCeeecCCCc---------C--hHHHHHHHHHHHHHhCCC
Confidence 4556555544433333333334556777765 799988876431 0 135678888888877655
No 316
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.34 E-value=3.5e+02 Score=23.48 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=41.4
Q ss_pred cccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC-CChHHHHhhcCEE
Q 008544 283 VWSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR-DHADPIFHDYKVF 349 (562)
Q Consensus 283 ~~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~-~~~~~l~~~adv~ 349 (562)
..+|+.+ ..+++++.+.....+.-+++-|+++ ...+-+.+++.|..+.+++.. ....++...||=|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D-f~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD-FVPLVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc-HHHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 3456554 5567787776665566666667654 444444556678888887665 4444777777743
No 317
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=23.90 E-value=3.7e+02 Score=27.63 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=45.3
Q ss_pred ChHHHHhhcCEEEEc--cCCCCCcH-HHHHHHHcCCcEEeeC--CCC-ccccccCCceEe----eCCHHHHHHHHHHHHh
Q 008544 338 HADPIFHDYKVFLNP--STTDVVCT-ATAEALAMGKIVVCAN--HPS-NDFFKQFPNCRT----YDGRNGFVEATLKALA 407 (562)
Q Consensus 338 ~~~~l~~~adv~v~p--S~~E~~~~-~~lEAma~G~PVI~t~--~~~-~e~v~~~~~g~~----~~d~~~la~~i~~ll~ 407 (562)
...++++.+..++.. |..+++=+ ++.+|+..|+-.|.-. .+. .+++.. +.++ ++++++|++.|..+.+
T Consensus 220 ~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~df~s~~~La~yl~~l~~ 297 (349)
T PF00852_consen 220 CKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVDDFKSPKELADYLKYLDK 297 (349)
T ss_dssp -HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGGGSSSHHHHHHHHHHHHT
T ss_pred cccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC--CCccchhcCCCHHHHHHHHHHHhc
Confidence 356788888877765 44555443 6889999997555544 233 555543 4555 3599999999999988
Q ss_pred CCCC
Q 008544 408 EEPA 411 (562)
Q Consensus 408 ~~~~ 411 (562)
|+.+
T Consensus 298 n~~~ 301 (349)
T PF00852_consen 298 NDEL 301 (349)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7654
No 318
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=23.68 E-value=1.3e+02 Score=30.14 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=31.5
Q ss_pred cCCeEEEEecccC-----CCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASL-----PWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~-----P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
...+|+|+|-++. +++.| -.-...+++.|.+.| .+|+++|.
T Consensus 39 ~~~~VlI~TGFpv~~~~~~ETDG-P~GA~aLa~aL~~lG-~~~~ivtd 84 (291)
T PF14336_consen 39 HAKSVLIVTGFPVPPAPPPETDG-PPGAAALARALQALG-KEVVIVTD 84 (291)
T ss_pred CCCcEEEEeCCCCCCCCCCCCCC-hHHHHHHHHHHHHcC-CeEEEEEC
Confidence 3478999987654 34455 556778999999998 99999986
No 319
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=23.64 E-value=4.2e+02 Score=28.36 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=23.3
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
..+|+++++.. ...+.+++.|.+.| .+|..+..
T Consensus 325 ~Gkrv~i~~g~---------~~~~~l~~~l~elG-mevv~~~t 357 (456)
T TIGR01283 325 KGKKAAIYTGG---------VKSWSLVSALQDLG-MEVVATGT 357 (456)
T ss_pred CCCEEEEEcCC---------chHHHHHHHHHHCC-CEEEEEee
Confidence 45788775442 35567888899998 99877744
No 320
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.53 E-value=5.3e+02 Score=24.82 Aligned_cols=39 Identities=23% Similarity=0.077 Sum_probs=24.6
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 92 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~ 92 (562)
+++|++|...--+..-|.+ -....++++| ++|++++...
T Consensus 10 ~~~vL~v~aHPDDe~~g~g----gtla~~~~~G-~~V~v~~lT~ 48 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCG----GTLAKLAARG-VEVTVVCLTL 48 (237)
T ss_pred CCcEEEEecCCcchhhccH----HHHHHHHHCC-CeEEEEEccC
Confidence 3789999866544422211 1334557777 9999998744
No 321
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.46 E-value=1e+02 Score=28.97 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.3
Q ss_pred cCCeEEEEecccCCCccccccc-HHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~-~~~la~~L~~~Gg~eVtvit~ 90 (562)
+.+||++-.+.. .| +.. ...+++.|.+.| ++|+++.+
T Consensus 4 ~~k~IllgVTGs----ia-a~k~a~~lir~L~k~G-~~V~vv~T 41 (196)
T PRK08305 4 KGKRIGFGLTGS----HC-TYDEVMPEIEKLVDEG-AEVTPIVS 41 (196)
T ss_pred CCCEEEEEEcCH----HH-HHHHHHHHHHHHHhCc-CEEEEEEC
Confidence 346887765532 12 444 477889999998 99999977
No 322
>PLN02306 hydroxypyruvate reductase
Probab=23.43 E-value=4.5e+02 Score=27.55 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=30.1
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+.+++++.+|+.++ |...|+ +.-..++.|--|.-+|-+..|
T Consensus 228 ~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG 274 (386)
T PLN02306 228 SSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRG 274 (386)
T ss_pred CCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCc
Confidence 578899999997765 333444 566688888877777776654
No 323
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.27 E-value=3.7e+02 Score=28.48 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=69.3
Q ss_pred ccCCHHHHHHHHHHHHHh-----cCCcEEEEEeCCC--------CHHHHHHHHHhcCCeeEE-eCCCCChHHHHhhc--C
Q 008544 284 WSKGYEELLGLLNIYHKE-----LAGLEMDLYGNGE--------DFDQIQRAAKKLKLVVRV-YPGRDHADPIFHDY--K 347 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~-----~~~~~l~ivG~g~--------~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~a--d 347 (562)
...|++..++++-+.... ...-.+-|+|... +..+++++.+++|++++. +.+-...+++.+.. .
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~ 215 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAA 215 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 346888877777543221 1123577777532 248899999999999876 56657777666644 4
Q ss_pred EEEEccCCCCCcHHHHHHH--HcCCcEEeeCCC-CccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 348 VFLNPSTTDVVCTATAEAL--AMGKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAm--a~G~PVI~t~~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
+-|..+. .++..+.|.| -+|.|.+....+ |. +..+++.+.|.+.+.
T Consensus 216 lniv~~~--~~g~~~a~~Lee~~GiP~~~~~~P~G~------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 216 ANVTLCL--DLGYYLGAALEQRFGVPEIKAPQPYGI------------EATDKWLREIAKVLG 264 (426)
T ss_pred EEEEECh--hHHHHHHHHHHHHhCCCeEecCCccCH------------HHHHHHHHHHHHHhC
Confidence 4443332 3567888888 489999976543 21 244666666666654
No 324
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=23.17 E-value=1.9e+02 Score=29.06 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHcCCCeEEEEe
Q 008544 67 AVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 67 a~~~~~la~~L~~~Gg~eVtvit 89 (562)
-.+-..+++.|.+.| ++|.+..
T Consensus 11 d~r~~~~~~~l~~~G-~~v~~~g 32 (296)
T PRK08306 11 DARQLELIRKLVELG-AKVSLVG 32 (296)
T ss_pred cHHHHHHHHHHHHCC-CEEEEEe
Confidence 667888999999998 9999953
No 325
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.08 E-value=4.5e+02 Score=28.29 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeC-----CCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcC-EEEEccCCCCCcHHHHHH
Q 008544 292 LGLLNIYHKELAGLEMDLYGN-----GEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK-VFLNPSTTDVVCTATAEA 365 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~-----g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~ad-v~v~pS~~E~~~~~~lEA 365 (562)
+..+...-.+.|...+++--. |.....+.+... ...++++...-+.-.+++..| |++.+|.. =+||
T Consensus 169 l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~--~~r~~ll~edfnpisll~~~dkvy~~ts~m------gfea 240 (671)
T COG3563 169 LLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQ--QHRVHLLAEDFNPISLLQNVDKVYCVTSQM------GFEA 240 (671)
T ss_pred HHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhcc--CceEEEecccCChHHHHHhcceeEEeeccc------cHHH
Confidence 344444446788877776553 111233333211 123444444334447888887 88877742 3699
Q ss_pred HHcCCcEEeeCCC
Q 008544 366 LAMGKIVVCANHP 378 (562)
Q Consensus 366 ma~G~PVI~t~~~ 378 (562)
+.||+|+++...+
T Consensus 241 ll~~~~~~~fg~p 253 (671)
T COG3563 241 LLCGKPLTTFGLP 253 (671)
T ss_pred HhcCCceeeecch
Confidence 9999999998765
No 326
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.07 E-value=1.5e+02 Score=25.11 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=21.8
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
|+|+++..+.-|.. .-....+.|.+.| ++|+.+.|
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G-~~v~~Vnp 35 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAG-YEVYPVNP 35 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT--EEEEEST
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCC-CEEEEECC
Confidence 57999987654432 2344557788887 99999977
No 327
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=23.02 E-value=3.3e+02 Score=29.21 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=69.7
Q ss_pred ccCCHHHHHHHHHHHHHh--cC--------CcEEEEEeCCC---CHHHHHHHHHhcCCeeEE-eCCCCChHHHHh--hcC
Q 008544 284 WSKGYEELLGLLNIYHKE--LA--------GLEMDLYGNGE---DFDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYK 347 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~--~~--------~~~l~ivG~g~---~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~--~ad 347 (562)
...|++..++++-..... .| +-.+-|+|.-. +..+++++.+++|+++.. +.+....+++.. .|.
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 456777777666543221 11 34577888522 357899999999999875 777667777655 444
Q ss_pred EEEEccCCCCCcHHHHHHH--HcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 348 VFLNPSTTDVVCTATAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAm--a~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
+-|..+ ...+..+.|.| -+|+|.+.. .+ +-+++.+++.+.|.+++..
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~-~~-----------~G~~~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEG-SF-----------YGIEDTSKALRDIADLFGD 295 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEec-CC-----------CcHHHHHHHHHHHHHHhCC
Confidence 444332 22346788888 579999863 21 0013567777777777764
No 328
>PRK13243 glyoxylate reductase; Reviewed
Probab=22.98 E-value=3.2e+02 Score=27.88 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=28.4
Q ss_pred CChHHHHhhcCEEEE--ccCCC---CCcHHHHHHHHcCCcEEeeCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTD---VVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E---~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+.+++++.+|+.++ |...| -++-..+++|--|.-+|-+..|
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 467899999997665 33332 2556678888777766666554
No 329
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.97 E-value=1.2e+02 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=29.5
Q ss_pred CCeEEEEecccCCCccccccc-HHHHHHHHHHcCCCeEEEEee
Q 008544 49 QQHIAIFTTASLPWLTGTAVN-PLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~-~~~la~~L~~~Gg~eVtvit~ 90 (562)
++||++++....|...- +.. ...+.++|.+.| |+|.++..
T Consensus 4 ~~~v~~~~g~~~~~~~~-~~~s~~~i~~al~~~g-~~v~~i~~ 44 (304)
T PRK01372 4 FGKVAVLMGGTSAEREV-SLNSGAAVLAALREAG-YDAHPIDP 44 (304)
T ss_pred CcEEEEEeCCCCCCceE-eHHhHHHHHHHHHHCC-CEEEEEec
Confidence 35899999777676543 333 366779999998 99999844
No 330
>PRK04531 acetylglutamate kinase; Provisional
Probab=22.93 E-value=4.2e+02 Score=27.88 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=63.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCCHHHHHHHHHhcCCeeEEeCC--CCChH--HHHhhcC
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPG--RDHAD--PIFHDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~--~~~~~--~l~~~ad 347 (562)
+..|+-+|.-.-....+.+++.+..+... +.+++++ |.| .++.+..+++|++.++..+ ..+.+ ++...+-
T Consensus 37 ~~~VIKiGG~~l~~~~~~l~~dla~L~~~--G~~~VlVHGgg---pqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l 111 (398)
T PRK04531 37 RFAVIKVGGAVLRDDLEALASSLSFLQEV--GLTPIVVHGAG---PQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVF 111 (398)
T ss_pred cEEEEEEChHHhhcCHHHHHHHHHHHHHC--CCcEEEEECCC---HHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHH
Confidence 45566665432224577888888877755 4666555 655 4556677788888777544 22222 2222110
Q ss_pred EEEEccCCCCCcHHHHHHHHcCC-cEEeeCCCCccccccCCceEeeC-CHHHHHHHHHHHHhC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGK-IVVCANHPSNDFFKQFPNCRTYD-GRNGFVEATLKALAE 408 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~-PVI~t~~~~~e~v~~~~~g~~~~-d~~~la~~i~~ll~~ 408 (562)
.-++.... -.+-+++..|. |||++..- ...|.+++ |.++++.++...+.-
T Consensus 112 ~~vn~~lv----~~I~~~L~~g~IPVlsplg~-------~~~G~~~NvnaD~vA~~LA~aL~a 163 (398)
T PRK04531 112 QRSNLDLV----EAVESSLRAGSIPVIASLGE-------TPSGQILNINADVAANELVSALQP 163 (398)
T ss_pred HHHHHHHH----HHHHHHHHCCCEEEEeCcEE-------CCCCcEEEECHHHHHHHHHHHcCC
Confidence 01111000 01556778886 66644221 13344444 777777777777653
No 331
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=22.92 E-value=2.2e+02 Score=24.06 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC----HHHHHHHHHhcCCeeEEeC
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED----FDQIQRAAKKLKLVVRVYP 334 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~----~~~l~~~~~~l~l~~~~~~ 334 (562)
.+.+..+....|+..++++|.|.. ..++++...+.|+.+.+..
T Consensus 42 ~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~ 88 (114)
T cd05125 42 EESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVD 88 (114)
T ss_pred HHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEEC
Confidence 455666655567889999999875 3677777788888777743
No 332
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.88 E-value=5.1e+02 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=22.3
Q ss_pred hcCEEE-EccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 345 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 345 ~adv~v-~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+|.++ .|...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 467444 4543333445567778899999998764
No 333
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=22.61 E-value=2.2e+02 Score=24.46 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=33.4
Q ss_pred ccCCHH--HHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC-CCChHHHHhhcCEEEE
Q 008544 284 WSKGYE--ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLN 351 (562)
Q Consensus 284 ~~Kg~~--~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~-~~~~~~l~~~adv~v~ 351 (562)
..|+.+ ..++++.......++.-+++.|+++....+ +.+++.|.++.+++. .....++.+.||-|+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v-~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLV-RKLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHH-HHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHH-HHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 445655 445777666555556666777775544444 444577888887663 3344488888887763
No 334
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=22.60 E-value=40 Score=32.34 Aligned_cols=99 Identities=16% Similarity=0.252 Sum_probs=50.6
Q ss_pred EEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEE--EE
Q 008544 276 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVF--LN 351 (562)
Q Consensus 276 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~--v~ 351 (562)
|+=+|++ |...+++.+-.=+...+|+...++|+|.. .+++++...+. ..++ .-|++ +.
T Consensus 6 iiKlGNi----g~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~------------~~~~--~pdf~I~is 67 (276)
T PF01993_consen 6 IIKLGNI----GTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVVTKM------------LKEW--DPDFVIVIS 67 (276)
T ss_dssp EEEES------HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHHHHH------------HHHH----SEEEEE-
T ss_pred EEEeccc----chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHH------------HHhh--CCCEEEEEC
Confidence 4445555 34444544422223456899999998864 34444432110 0111 33444 44
Q ss_pred ccCCCCCcHHHHHHH-HcCCcEEe-eCCCC---ccccccCCceEee
Q 008544 352 PSTTDVVCTATAEAL-AMGKIVVC-ANHPS---NDFFKQFPNCRTY 392 (562)
Q Consensus 352 pS~~E~~~~~~lEAm-a~G~PVI~-t~~~~---~e~v~~~~~g~~~ 392 (562)
|.-.-.-|...-|.+ +.|.|+|. +|.++ .+.+++..-|++.
T Consensus 68 PN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~GYIi 113 (276)
T PF01993_consen 68 PNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFGYII 113 (276)
T ss_dssp S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-EEEE
T ss_pred CCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCcEEE
Confidence 444445677788887 58999554 57775 6677777788873
No 335
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=22.47 E-value=8.4e+02 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=20.0
Q ss_pred cHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 359 CTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
..++.||.-+|+|||+- |..+ ++.+
T Consensus 165 ~~AI~EA~kl~IPvIaivDTn~dp~~I 191 (326)
T PRK12311 165 DIAIQEAQRLGIPVAAIVDTNCDPDGI 191 (326)
T ss_pred hHHHHHHHHcCCCEEEEeeCCCCcccc
Confidence 67999999999999998 6654 4443
No 336
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.40 E-value=5.5e+02 Score=25.59 Aligned_cols=64 Identities=22% Similarity=0.136 Sum_probs=41.4
Q ss_pred hhcC-EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEee-CCHH---HHHHHHHHHHhCC
Q 008544 344 HDYK-VFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTY-DGRN---GFVEATLKALAEE 409 (562)
Q Consensus 344 ~~ad-v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~-~d~~---~la~~i~~ll~~~ 409 (562)
+..| +.|.|.-.+.+.-.+-+|...|+|||+-|.....- .....++- ++.. ..++.+.+.+...
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~--~~~~~~vg~dn~~~G~~~a~~l~~~~~~~ 158 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP--GDRVAYVGSDNYKAGRLAAEYLAKALGGK 158 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC--CceeEEEecCcHHHHHHHHHHHHHHhCCC
Confidence 4566 55566678888999999999999999999875221 22333443 3222 3455666655554
No 337
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=22.18 E-value=4.6e+02 Score=27.20 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=44.0
Q ss_pred HhcCCc-EEEEEeCCCCHHHHHHHHHh-cCCeeEE-eCCCCC---hHHHHhhcCEEEEccCCCCCcHHHH-HHHHcCCcE
Q 008544 300 KELAGL-EMDLYGNGEDFDQIQRAAKK-LKLVVRV-YPGRDH---ADPIFHDYKVFLNPSTTDVVCTATA-EALAMGKIV 372 (562)
Q Consensus 300 ~~~~~~-~l~ivG~g~~~~~l~~~~~~-l~l~~~~-~~~~~~---~~~l~~~adv~v~pS~~E~~~~~~l-EAma~G~PV 372 (562)
.+.++. ++++.|. +.+.+++.+++ .+..+.. .....+ +.++++.+|++|+.+-.- ++..++ -|+.+|++.
T Consensus 18 ~~~~~~~~v~va~r--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~y 94 (386)
T PF03435_consen 18 ARRGPFEEVTVADR--NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHY 94 (386)
T ss_dssp HCTTCE-EEEEEES--SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EE
T ss_pred hcCCCCCcEEEEEC--CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCe
Confidence 344455 8888886 56666666654 3344444 233333 447899999999876422 455544 458889999
Q ss_pred EeeCC
Q 008544 373 VCANH 377 (562)
Q Consensus 373 I~t~~ 377 (562)
|-+..
T Consensus 95 vD~~~ 99 (386)
T PF03435_consen 95 VDTSY 99 (386)
T ss_dssp EESS-
T ss_pred eccch
Confidence 98643
No 338
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.78 E-value=1.3e+02 Score=27.07 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=24.9
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+.++|+|+. | +.-...+++.|.+.| ++|+|+++
T Consensus 12 ~~~~vlVvG--------G-G~va~rka~~Ll~~g-a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIG--------G-GKIAYRKASGLKDTG-AFVTVVSP 44 (157)
T ss_pred CCCEEEEEC--------C-CHHHHHHHHHHHhCC-CEEEEEcC
Confidence 446888873 2 444567888999988 99999976
No 339
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.33 E-value=4.9e+02 Score=26.01 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 368 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 368 (562)
+++.++...-...+-+.+++|.+.- -.-+..+..+.+..+.+ +....+..+..++||++|...-..++ .--|.+--
T Consensus 145 ii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~--i~~~~ik~ 222 (285)
T PRK14189 145 VMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNV--LTADMVKP 222 (285)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCc--cCHHHcCC
Confidence 3334433322345688999999766 45555555666777776 45566788999999999988654443 33477877
Q ss_pred CCcEE
Q 008544 369 GKIVV 373 (562)
Q Consensus 369 G~PVI 373 (562)
|.-||
T Consensus 223 gavVI 227 (285)
T PRK14189 223 GATVI 227 (285)
T ss_pred CCEEE
Confidence 86544
No 340
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=21.21 E-value=7.1e+02 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
..+|++|+.+. ...+.+++.|.+.| .+|..+.+
T Consensus 273 ~Gkrv~i~gd~---------~~~~~l~~~L~elG-m~~v~~~t 305 (407)
T TIGR01279 273 RGKKIFFFGDN---------LLELPLARFLKRCG-MEVVECGT 305 (407)
T ss_pred CCCEEEEECCc---------hHHHHHHHHHHHCC-CEEEEecC
Confidence 55899988652 35677899999987 88876655
No 341
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=21.20 E-value=9e+02 Score=24.82 Aligned_cols=132 Identities=14% Similarity=-0.006 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCC------CCChH----HHHhhcCEEEEcc--CCCCCcHHHHHHHHcC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPG------RDHAD----PIFHDYKVFLNPS--TTDVVCTATAEALAMG 369 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~------~~~~~----~l~~~adv~v~pS--~~E~~~~~~lEAma~G 369 (562)
.+-++.++|.|+.-+..-+...+.|.. +.+... +.+.. ++...+|+.+..| ..-..|....|.+.--
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~ 252 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI 252 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc
Confidence 345677777766544333333344433 222111 12211 4467899999853 3334566666655532
Q ss_pred CcEEeeCCCCc-cc--cccCCceEeeCCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHHhcC
Q 008544 370 KIVVCANHPSN-DF--FKQFPNCRTYDGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQVAELVG 438 (562)
Q Consensus 370 ~PVI~t~~~~~-e~--v~~~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~y~~~~ 438 (562)
.+-+.-|..-+ ++ +....+..++ |.+++.+.+.+-+.... ......+.-.+..+.++.+.|++..
T Consensus 253 ~~r~~iDLAvPRdId~v~~~~~v~Ly-~iDdL~~i~~~n~~~R~---~~~~~ae~iI~~~~~~~~~~~~~~~ 320 (338)
T PRK00676 253 PDRIVFDFNVPRTFPWSETPFPHRYL-DMDFISEWVQKHLQCRK---EVNNKHKLSLREAAYKQWESYEKKL 320 (338)
T ss_pred cCcEEEEecCCCCCccccccCCcEEE-EhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21344455431 11 2333344444 55555555444332111 1111144556777788888888665
No 342
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.07 E-value=5.4e+02 Score=27.75 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCC
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
..++|+|+++ +...+.+++.|.+.| .+|..+.... ........+...+......
T Consensus 323 ~Gk~vaI~~~---------~~~~~~la~~l~ElG-m~v~~~~~~~----------------~~~~~~~~l~~~~~~~~~v 376 (475)
T PRK14478 323 EGKRVLLYTG---------GVKSWSVVKALQELG-MEVVGTSVKK----------------STDEDKERIKELMGPDAHM 376 (475)
T ss_pred CCCEEEEEcC---------CchHHHHHHHHHHCC-CEEEEEEEEC----------------CCHHHHHHHHHHcCCCcEE
Q ss_pred CCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhc
Q 008544 128 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~ 206 (562)
..+....- +.+.+++.+||+++.++.... ++.+.+ |.+-..+.....+.-+.+.
T Consensus 377 ~~d~~~~e-----------------~~~~i~~~~pDliig~s~~~~--------~a~k~giP~~~~~~~~~~p~~Gy~G~ 431 (475)
T PRK14478 377 IDDANPRE-----------------LYKMLKEAKADIMLSGGRSQF--------IALKAGMPWLDINQERHHAYAGYEGM 431 (475)
T ss_pred EeCCCHHH-----------------HHHHHhhcCCCEEEecCchhh--------hhhhcCCCEEEccccccCCccchhhH
Q ss_pred hHHHHHHHHHHH
Q 008544 207 DRLQAFLLEFVN 218 (562)
Q Consensus 207 ~~~~~~~~~~~~ 218 (562)
-.+...+.+.+.
T Consensus 432 ~~l~~~i~~~l~ 443 (475)
T PRK14478 432 VELVREIDLAIN 443 (475)
T ss_pred HHHHHHHHHHhc
No 343
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.89 E-value=7.4e+02 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=20.9
Q ss_pred hcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 345 DYKVFLNPST-TDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 345 ~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+|.+|..+. .+...-.+-++...|.|||..+..
T Consensus 57 ~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 57 KPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCC
Confidence 5675555432 222333455667789999999764
No 344
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.89 E-value=1.6e+02 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=20.8
Q ss_pred hcC-EEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 345 DYK-VFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 345 ~ad-v~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
++| +|+.....-+++..-.==-..|+|||+|+.
T Consensus 179 ~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~ 212 (238)
T COG3473 179 DADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQ 212 (238)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhCCceeeccH
Confidence 445 666655554554433223578999999976
No 345
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=20.77 E-value=1.3e+02 Score=31.07 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=26.8
Q ss_pred hhhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 44 LMDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.|.+++|+|+|.. |++.-=..+++.|.++| |+|+.+..
T Consensus 16 ~~~~~~~~IlVtG--------gtGfIG~~l~~~L~~~G-~~V~~v~r 53 (370)
T PLN02695 16 YWPSEKLRICITG--------AGGFIASHIARRLKAEG-HYIIASDW 53 (370)
T ss_pred CCCCCCCEEEEEC--------CccHHHHHHHHHHHhCC-CEEEEEEe
Confidence 4556668998763 32333356889999998 99999864
No 346
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.66 E-value=5.8e+02 Score=24.66 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=25.1
Q ss_pred eEEEEecccCCCcccc--cccHHHHHHHHHHcCCCeEEEEee
Q 008544 51 HIAIFTTASLPWLTGT--AVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 51 rI~ivt~~~~P~~~G~--a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+|.+||+.- ||+ .+.+.++...|+++| ++|.++-.
T Consensus 3 ~iIVvTSGK----GGVGKTTttAnig~aLA~~G-kKv~liD~ 39 (272)
T COG2894 3 RIIVVTSGK----GGVGKTTTTANIGTALAQLG-KKVVLIDF 39 (272)
T ss_pred eEEEEecCC----CCcCccchhHHHHHHHHHcC-CeEEEEec
Confidence 455666542 443 456678889999998 99999865
No 347
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=20.66 E-value=4.7e+02 Score=28.71 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=29.9
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
++.+++++.+|+.++ |...|+ ++-..++.|--|.-+|-+..|+
T Consensus 185 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 232 (525)
T TIGR01327 185 DDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGG 232 (525)
T ss_pred CCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCc
Confidence 468899999997664 433333 5557888888887777776654
No 348
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=20.56 E-value=3.3e+02 Score=24.23 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEEeCCCC-HHHHHHHHHhcCCeeEE-eCC--CC--ChH-------HHHhh--cCEEEE
Q 008544 288 YEELLGLLNIYHKEL-AGLEMDLYGNGED-FDQIQRAAKKLKLVVRV-YPG--RD--HAD-------PIFHD--YKVFLN 351 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~-~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~-~~~--~~--~~~-------~l~~~--adv~v~ 351 (562)
-.+++++..++.++. ..+..+++|+.+. .+.+++.....|.+..+ ... .. +.+ ++++. +|++++
T Consensus 17 ~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 17 SLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 347788888887654 2477788885344 46667766667765333 211 11 122 34444 689999
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEee
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t 375 (562)
|+...+-.+...=|..+|.|+++-
T Consensus 97 ~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 97 GSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred cCcCCCCcHHHHHHHHhCCCccce
Confidence 987666667777777788887765
No 349
>PRK08572 rps17p 30S ribosomal protein S17P; Reviewed
Probab=20.53 E-value=1.1e+02 Score=25.69 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=31.3
Q ss_pred HhCCCCcccCccccCCCCcccceeee----eecceeeEEEEeeeEEE
Q 008544 500 ELGLVTELGKGHCHRPNGSWFGSVLV----LVGSVIGVLFVKSVTLK 542 (562)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 542 (562)
++|+.-+..+..|+-++--|-|.+.+ +.|.|+..-.-|++++.
T Consensus 2 ~ig~~~~~p~~~~~d~~cP~~g~l~irgk~l~G~VvS~Km~KTvvV~ 48 (108)
T PRK08572 2 NIGLDVKPPEEECDDPNCPFHGTLPVRGQVLEGTVVSDKMHKTVVVE 48 (108)
T ss_pred ccccCCCCCcccccCCCCCCcceeeeeeEEEEEEEEecCCCceEEEE
Confidence 56777677889999999999998865 66666665555655443
No 350
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.49 E-value=7.2e+02 Score=23.39 Aligned_cols=60 Identities=12% Similarity=-0.109 Sum_probs=32.9
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
..|.++..+.. .+....+++..|.|||..+..... ........++.+....+...+++..
T Consensus 55 ~vdgiii~~~~--~~~~~~~~~~~~ipvv~~~~~~~~---~~~~~v~~d~~~~g~~~~~~l~~~g 114 (267)
T cd06284 55 QADGIILLDGS--LPPTALTALAKLPPIVQACEYIPG---LAVPSVSIDNVAAARLAVDHLISLG 114 (267)
T ss_pred CCCEEEEecCC--CCHHHHHHHhcCCCEEEEecccCC---CCcceEEecccHHHHHHHHHHHHcC
Confidence 46755553322 122256777789999987543211 1112233466666666777766654
No 351
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=20.29 E-value=7.6e+02 Score=23.56 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=35.7
Q ss_pred HHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 342 IFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 342 l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
.....|.+|.-+... +-.+-++-..|+|+|.-+....+ .....+..++.++-..+.+.+++...
T Consensus 49 ~~~~vdgii~~~~~~--~~~~~~~~~~~~pvV~~~~~~~~---~~~~~v~~D~~~a~~~~~~~l~~~g~ 112 (270)
T cd01544 49 ILEDVDGIIAIGKFS--QEQLAKLAKLNPNLVFVDSNPAP---DGFDSVVPDFEQAVEKALDYLLELGH 112 (270)
T ss_pred hccCcCEEEEecCCC--HHHHHHHHhhCCCEEEECCCCCC---CCCCEEEECHHHHHHHHHHHHHHcCC
Confidence 345667555432211 12344556779999999764321 11223445677777777777775433
No 352
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.28 E-value=4.9e+02 Score=27.66 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=60.1
Q ss_pred EEEEeecc-ccCCHHHHHHH-HHHHHHhcCCcEEEEEeCCCCHHH----------------------------HHHHHHh
Q 008544 276 AYYIGRMV-WSKGYEELLGL-LNIYHKELAGLEMDLYGNGEDFDQ----------------------------IQRAAKK 325 (562)
Q Consensus 276 il~vGr~~-~~Kg~~~ll~a-~~~l~~~~~~~~l~ivG~g~~~~~----------------------------l~~~~~~ 325 (562)
|+.+|... ...|-+.++.+ +..|++..|+++++++-..|.... +++....
T Consensus 3 i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 82 (426)
T PRK10017 3 LLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRR 82 (426)
T ss_pred EEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccchhhhcccccccchhhhhhhhcccccccchhHHHHHHh
Confidence 44555543 36788877766 467788889999999987665422 1111100
Q ss_pred -c------------CCeeEEe--CCCCChHHHHhhcCEEEEcc---CCCCCcHH----HHHHHHcCCcEEeeCCC
Q 008544 326 -L------------KLVVRVY--PGRDHADPIFHDYKVFLNPS---TTDVVCTA----TAEALAMGKIVVCANHP 378 (562)
Q Consensus 326 -l------------~l~~~~~--~~~~~~~~l~~~adv~v~pS---~~E~~~~~----~lEAma~G~PVI~t~~~ 378 (562)
. |+...+. ....+....++.||++|.-. +.|.+|.. ++-|..+|+|++.-..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 83 RYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred hhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 0 0000000 00112335788999999873 34544432 45678899999998665
No 353
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.24 E-value=7.7e+02 Score=26.07 Aligned_cols=84 Identities=14% Similarity=0.069 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCee-EEeCCCCChH---HHHh--hcCEEEEccCCCCCcHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVV-RVYPGRDHAD---PIFH--DYKVFLNPSTTDVVCTAT 362 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~-~~~~~~~~~~---~l~~--~adv~v~pS~~E~~~~~~ 362 (562)
.++..++++++++|++.+++.-.-+- .+..++ .++-.+ +.+.++|... .+++ +-|+.|+- ..|-+|+.+
T Consensus 64 a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~---~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii~-EtElWPnli 139 (419)
T COG1519 64 AALPLVRALRERFPDLRILVTTMTPTGAERAAA---LFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLIIM-ETELWPNLI 139 (419)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCccHHHHHHH---HcCCCeEEEecCcCchHHHHHHHHhcCCCEEEEE-eccccHHHH
Confidence 44455566678899999888764343 333333 334333 3356655444 4444 44666654 578899999
Q ss_pred HHHHHcCCcEEeeCC
Q 008544 363 AEALAMGKIVVCANH 377 (562)
Q Consensus 363 lEAma~G~PVI~t~~ 377 (562)
.|+-..|+|.+--+.
T Consensus 140 ~e~~~~~~p~~LvNa 154 (419)
T COG1519 140 NELKRRGIPLVLVNA 154 (419)
T ss_pred HHHHHcCCCEEEEee
Confidence 999999999887654
No 354
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.13 E-value=4.7e+02 Score=28.62 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=57.9
Q ss_pred cEEEEEeCC-------CCHHHHHHHHHhcCCeeEE-eCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHH--cCCcE
Q 008544 305 LEMDLYGNG-------EDFDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALA--MGKIV 372 (562)
Q Consensus 305 ~~l~ivG~g-------~~~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma--~G~PV 372 (562)
-.+-|+|.- .|..+++++.+.+|++++. +++....+++-+ .|++-|..+. -++..+.|+|. +|+|.
T Consensus 159 ~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~--~~g~~~A~~Lee~fGiP~ 236 (519)
T PRK02910 159 PSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYR--EIGESAARYLEREFGQPY 236 (519)
T ss_pred CeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCH--HHHHHHHHHHHHHhCCcc
Confidence 457788762 2458899999999999876 566667776665 5555544432 25677788865 79998
Q ss_pred EeeCCC-CccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 373 VCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 373 I~t~~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
+.. .+ | ..+.++|.+.|.+++..
T Consensus 237 i~~-~PiG------------~~~T~~fL~~la~~~g~ 260 (519)
T PRK02910 237 VKT-VPIG------------VGATARFIREVAELLNL 260 (519)
T ss_pred ccc-cccc------------HHHHHHHHHHHHHHhCC
Confidence 764 22 1 13456666666666653
No 355
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.06 E-value=8.7e+02 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.1
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.++|++|+.+ +...+.+++.|.+.| .+|..+..
T Consensus 302 ~gkrv~i~g~---------~~~~~~la~~L~elG-m~v~~~~~ 334 (435)
T cd01974 302 HGKKFALYGD---------PDFLIGLTSFLLELG-MEPVHVLT 334 (435)
T ss_pred CCCEEEEEcC---------hHHHHHHHHHHHHCC-CEEEEEEe
Confidence 4578888764 235677889999988 89866544
Done!