Query 008544
Match_columns 562
No_of_seqs 412 out of 2368
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 06:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okp_A GDP-mannose-dependent a 100.0 9.4E-37 3.2E-41 318.1 29.8 351 49-442 4-384 (394)
2 3fro_A GLGA glycogen synthase; 100.0 1.2E-36 4.1E-41 321.8 30.1 370 48-440 1-433 (439)
3 3c48_A Predicted glycosyltrans 100.0 1.6E-35 5.3E-40 314.1 27.6 367 49-440 20-428 (438)
4 2jjm_A Glycosyl transferase, g 100.0 3.4E-35 1.2E-39 307.3 28.4 348 54-439 18-387 (394)
5 2x6q_A Trehalose-synthase TRET 100.0 1E-34 3.5E-39 305.9 29.4 349 48-438 39-415 (416)
6 2r60_A Glycosyl transferase, g 100.0 1.2E-34 4E-39 313.0 26.0 376 45-440 4-462 (499)
7 2qzs_A Glycogen synthase; glyc 100.0 4.3E-34 1.5E-38 307.4 28.1 375 50-440 1-479 (485)
8 2gek_A Phosphatidylinositol ma 100.0 8.1E-35 2.8E-39 304.9 21.9 352 48-442 19-388 (406)
9 1rzu_A Glycogen synthase 1; gl 100.0 5.5E-34 1.9E-38 306.6 26.8 376 50-440 1-478 (485)
10 3vue_A GBSS-I, granule-bound s 100.0 2.9E-33 1E-37 303.3 25.5 213 225-439 241-513 (536)
11 2iw1_A Lipopolysaccharide core 100.0 6.3E-34 2.2E-38 294.8 17.5 345 50-438 1-372 (374)
12 3oy2_A Glycosyltransferase B73 100.0 2E-33 7E-38 295.6 21.3 335 50-440 1-393 (413)
13 3s28_A Sucrose synthase 1; gly 100.0 1.1E-32 3.9E-37 308.5 28.4 275 160-438 406-770 (816)
14 2iuy_A Avigt4, glycosyltransfe 100.0 7.8E-33 2.7E-37 283.8 22.6 298 49-438 3-336 (342)
15 2x0d_A WSAF; GT4 family, trans 100.0 2E-29 6.8E-34 265.2 15.2 333 47-436 44-408 (413)
16 1f0k_A MURG, UDP-N-acetylgluco 99.9 4.4E-27 1.5E-31 242.8 20.0 330 49-438 6-358 (364)
17 2vsy_A XCC0866; transferase, g 99.9 4.8E-27 1.6E-31 257.5 18.2 325 47-438 203-560 (568)
18 2hy7_A Glucuronosyltransferase 99.9 1.2E-26 4.1E-31 243.8 19.0 241 161-443 124-385 (406)
19 3beo_A UDP-N-acetylglucosamine 99.9 2.1E-25 7.2E-30 231.0 16.4 266 150-435 84-374 (375)
20 3qhp_A Type 1 capsular polysac 99.9 3.6E-24 1.2E-28 195.7 12.1 155 273-429 2-166 (166)
21 2bfw_A GLGA glycogen synthase; 99.9 9.3E-24 3.2E-28 198.9 14.9 169 247-418 3-193 (200)
22 1vgv_A UDP-N-acetylglucosamine 99.9 1.7E-24 5.7E-29 225.1 9.4 271 150-438 75-377 (384)
23 1uqt_A Alpha, alpha-trehalose- 99.9 2.6E-23 8.8E-28 221.8 17.7 185 248-438 226-455 (482)
24 3nb0_A Glycogen [starch] synth 99.9 3.6E-22 1.2E-26 214.3 23.7 277 158-439 178-635 (725)
25 1v4v_A UDP-N-acetylglucosamine 99.9 1.8E-22 6E-27 209.3 14.3 269 150-439 80-366 (376)
26 2xci_A KDO-transferase, 3-deox 99.9 2.3E-20 7.9E-25 193.6 24.7 235 152-418 102-357 (374)
27 2f9f_A First mannosyl transfer 99.9 1.9E-21 6.3E-26 180.0 13.1 142 266-411 16-165 (177)
28 3t5t_A Putative glycosyltransf 99.8 8.3E-20 2.8E-24 192.8 21.8 265 160-438 148-474 (496)
29 3otg_A CALG1; calicheamicin, T 99.8 1.5E-18 5.3E-23 181.8 17.5 357 45-436 16-409 (412)
30 3s2u_A UDP-N-acetylglucosamine 99.7 2.1E-16 7.3E-21 163.1 22.4 255 150-435 81-352 (365)
31 3dzc_A UDP-N-acetylglucosamine 99.7 2.1E-17 7.3E-22 172.5 12.8 340 50-434 26-394 (396)
32 3rhz_A GTF3, nucleotide sugar 99.7 2E-17 7E-22 168.2 8.6 240 160-430 73-329 (339)
33 3ot5_A UDP-N-acetylglucosamine 99.7 1.8E-16 6.3E-21 165.7 15.7 341 49-435 27-389 (403)
34 3tsa_A SPNG, NDP-rhamnosyltran 99.7 2E-15 6.7E-20 157.1 18.4 261 150-435 103-388 (391)
35 4fzr_A SSFS6; structural genom 99.6 3.9E-15 1.3E-19 155.4 18.6 146 272-431 227-396 (398)
36 2iyf_A OLED, oleandomycin glyc 99.6 5.9E-15 2E-19 155.5 19.1 154 273-437 233-401 (430)
37 3oti_A CALG3; calicheamicin, T 99.5 2.2E-14 7.6E-19 149.6 13.2 147 273-434 233-396 (398)
38 3ia7_A CALG4; glycosysltransfe 99.5 7.3E-13 2.5E-17 137.8 20.6 152 273-436 232-399 (402)
39 3rsc_A CALG2; TDP, enediyne, s 99.5 1.6E-12 5.6E-17 136.0 20.7 151 273-435 248-413 (415)
40 2p6p_A Glycosyl transferase; X 99.5 1.3E-12 4.4E-17 135.4 19.7 230 150-410 96-349 (384)
41 2yjn_A ERYCIII, glycosyltransf 99.3 5.2E-11 1.8E-15 125.9 19.9 149 273-435 268-435 (441)
42 4hwg_A UDP-N-acetylglucosamine 99.3 1.2E-11 4.1E-16 128.1 14.1 241 150-415 83-351 (385)
43 2iya_A OLEI, oleandomycin glyc 99.2 2E-09 6.8E-14 112.9 24.5 150 273-434 256-420 (424)
44 4amg_A Snogd; transferase, pol 99.2 5.6E-11 1.9E-15 123.5 10.3 127 273-410 238-370 (400)
45 3h4t_A Glycosyltransferase GTF 99.1 2.4E-09 8.2E-14 111.7 21.3 147 273-435 222-382 (404)
46 3q3e_A HMW1C-like glycosyltran 99.0 7.1E-10 2.4E-14 118.9 8.6 263 151-438 339-624 (631)
47 1iir_A Glycosyltransferase GTF 98.8 2.2E-07 7.5E-12 97.0 18.7 147 273-437 239-398 (415)
48 1rrv_A Glycosyltransferase GTF 98.8 2.5E-07 8.4E-12 96.7 18.6 121 273-410 238-371 (416)
49 1l5w_A Maltodextrin phosphoryl 98.7 7.8E-08 2.7E-12 105.3 14.8 168 270-438 523-731 (796)
50 2o6l_A UDP-glucuronosyltransfe 98.7 2.2E-08 7.6E-13 90.9 8.6 121 273-410 22-156 (170)
51 2c4m_A Glycogen phosphorylase; 98.7 2.9E-07 9.8E-12 100.9 18.2 169 269-438 512-720 (796)
52 3hbm_A UDP-sugar hydrolase; PS 98.4 8.4E-06 2.9E-10 80.1 16.3 187 152-377 60-252 (282)
53 2gj4_A Glycogen phosphorylase, 98.2 7.9E-06 2.7E-10 90.0 12.0 167 270-438 547-755 (824)
54 4gyw_A UDP-N-acetylglucosamine 98.1 2.6E-05 9.1E-10 87.0 14.1 171 264-438 514-706 (723)
55 2vch_A Hydroquinone glucosyltr 97.5 0.051 1.7E-06 57.4 27.0 76 332-409 342-430 (480)
56 1psw_A ADP-heptose LPS heptosy 97.4 0.01 3.5E-07 59.6 19.5 106 266-378 173-289 (348)
57 3tov_A Glycosyl transferase fa 96.9 0.037 1.3E-06 55.8 18.0 158 267-436 179-347 (349)
58 2jzc_A UDP-N-acetylglucosamine 96.1 0.0073 2.5E-07 56.7 6.0 48 327-378 113-161 (224)
59 2c1x_A UDP-glucose flavonoid 3 96.1 0.016 5.4E-07 60.8 9.3 126 273-409 272-413 (456)
60 3hbf_A Flavonoid 3-O-glucosylt 95.9 0.041 1.4E-06 57.5 11.6 131 273-409 274-415 (454)
61 2pq6_A UDP-glucuronosyl/UDP-gl 95.2 0.17 5.7E-06 53.4 13.3 126 274-410 297-441 (482)
62 2acv_A Triterpene UDP-glucosyl 95.2 0.23 7.8E-06 52.0 14.1 127 273-407 277-424 (463)
63 1ygp_A Yeast glycogen phosphor 91.5 1.4 4.9E-05 48.6 12.5 130 271-400 598-768 (879)
64 2gt1_A Lipopolysaccharide hept 91.2 1 3.4E-05 44.4 10.5 128 273-408 179-322 (326)
65 3l7i_A Teichoic acid biosynthe 83.8 5.7 0.0002 43.9 11.7 171 226-407 479-682 (729)
66 3gt7_A Sensor protein; structu 73.4 21 0.00073 29.9 9.8 108 304-411 7-130 (154)
67 3grc_A Sensor protein, kinase; 71.3 34 0.0011 27.8 10.4 106 304-409 6-128 (140)
68 3h5i_A Response regulator/sens 68.8 39 0.0013 27.5 10.3 104 304-407 5-123 (140)
69 2zay_A Response regulator rece 68.8 26 0.00089 28.8 9.2 106 304-409 8-129 (147)
70 3cg4_A Response regulator rece 68.4 36 0.0012 27.7 10.0 104 304-407 7-126 (142)
71 3uuw_A Putative oxidoreductase 68.2 15 0.00053 35.4 8.5 72 300-377 27-98 (308)
72 3jte_A Response regulator rece 67.6 33 0.0011 28.0 9.6 103 305-407 4-122 (143)
73 3cnb_A DNA-binding response re 66.7 42 0.0014 27.1 10.1 107 304-410 8-132 (143)
74 4had_A Probable oxidoreductase 66.3 23 0.0008 34.7 9.6 73 300-377 44-118 (350)
75 3tqr_A Phosphoribosylglycinami 66.0 34 0.0011 31.3 9.7 42 152-197 74-115 (215)
76 3mz0_A Inositol 2-dehydrogenas 64.7 31 0.001 33.8 10.1 73 301-377 24-98 (344)
77 3u80_A 3-dehydroquinate dehydr 63.8 50 0.0017 28.2 9.5 90 317-406 36-146 (151)
78 2gkg_A Response regulator homo 63.5 37 0.0013 26.7 8.9 105 305-409 6-126 (127)
79 1vi6_A 30S ribosomal protein S 63.4 10 0.00035 34.5 5.6 97 285-383 50-154 (208)
80 3lte_A Response regulator; str 63.3 47 0.0016 26.5 9.6 106 304-409 6-126 (132)
81 3n8k_A 3-dehydroquinate dehydr 61.3 55 0.0019 28.5 9.4 91 317-407 60-168 (172)
82 4hkt_A Inositol 2-dehydrogenas 61.2 29 0.001 33.7 9.1 70 301-377 24-95 (331)
83 1k68_A Phytochrome response re 60.9 50 0.0017 26.4 9.4 103 305-407 3-130 (140)
84 4fb5_A Probable oxidoreductase 60.7 19 0.00065 35.8 7.8 99 274-377 26-126 (393)
85 3hzh_A Chemotaxis response reg 60.1 39 0.0013 28.3 8.8 63 345-407 83-156 (157)
86 3gl9_A Response regulator; bet 59.7 49 0.0017 26.2 9.0 102 306-407 4-121 (122)
87 3j20_B 30S ribosomal protein S 59.6 17 0.00059 32.9 6.4 98 284-383 45-150 (202)
88 3nva_A CTP synthase; rossman f 59.5 1.5E+02 0.0051 31.0 14.2 205 159-378 133-388 (535)
89 3nhm_A Response regulator; pro 59.4 61 0.0021 25.8 9.6 104 305-409 5-123 (133)
90 3hdv_A Response regulator; PSI 58.2 62 0.0021 25.9 9.5 107 304-410 7-129 (136)
91 3ilh_A Two component response 57.8 66 0.0022 26.0 9.7 107 304-410 9-141 (146)
92 3db2_A Putative NADPH-dependen 56.6 39 0.0013 33.2 9.2 72 300-377 25-98 (354)
93 2pln_A HP1043, response regula 56.5 52 0.0018 26.5 8.7 102 304-408 18-133 (137)
94 3t6k_A Response regulator rece 56.1 78 0.0027 25.5 9.8 106 305-410 5-126 (136)
95 3bch_A 40S ribosomal protein S 55.6 15 0.00051 34.5 5.3 99 284-383 84-190 (253)
96 4h3v_A Oxidoreductase domain p 55.4 26 0.0009 34.7 7.8 69 304-377 37-107 (390)
97 3heb_A Response regulator rece 54.5 57 0.0019 26.9 8.8 103 305-407 5-134 (152)
98 4e7p_A Response regulator; DNA 54.5 58 0.002 26.8 8.8 65 346-410 67-142 (150)
99 2qr3_A Two-component system re 54.0 51 0.0017 26.5 8.2 106 305-410 4-128 (140)
100 3ec7_A Putative dehydrogenase; 53.8 41 0.0014 33.2 8.8 73 301-377 45-119 (357)
101 3lua_A Response regulator rece 53.7 27 0.00091 28.5 6.4 107 304-410 4-129 (140)
102 3ehd_A Uncharacterized conserv 53.7 25 0.00086 30.6 6.2 66 341-406 65-161 (162)
103 3hdg_A Uncharacterized protein 53.7 45 0.0015 26.9 7.8 105 304-408 7-125 (137)
104 1dbw_A Transcriptional regulat 53.6 80 0.0027 24.8 10.6 105 304-408 3-121 (126)
105 3moi_A Probable dehydrogenase; 53.5 38 0.0013 33.8 8.6 71 301-377 24-96 (387)
106 1mb3_A Cell division response 52.9 79 0.0027 24.6 9.1 104 306-409 3-122 (124)
107 3ezy_A Dehydrogenase; structur 52.6 55 0.0019 31.9 9.5 72 301-377 23-96 (344)
108 2rjn_A Response regulator rece 52.5 75 0.0026 26.2 9.3 104 304-407 7-125 (154)
109 3kip_A 3-dehydroquinase, type 52.5 71 0.0024 27.7 8.6 62 346-407 84-157 (167)
110 3e9m_A Oxidoreductase, GFO/IDH 52.4 54 0.0018 31.9 9.3 72 301-377 26-99 (330)
111 3hv2_A Response regulator/HD d 51.7 87 0.003 25.7 9.6 103 305-407 15-132 (153)
112 3f6c_A Positive transcription 51.5 89 0.003 24.8 10.7 107 305-411 2-123 (134)
113 2f62_A Nucleoside 2-deoxyribos 51.3 88 0.003 27.0 9.4 37 341-377 63-106 (161)
114 3kht_A Response regulator; PSI 51.3 70 0.0024 25.9 8.8 104 304-407 5-127 (144)
115 2d1p_A TUSD, hypothetical UPF0 50.8 18 0.00063 30.6 4.8 39 50-90 13-52 (140)
116 3cg0_A Response regulator rece 50.6 90 0.0031 24.9 9.3 104 304-407 9-127 (140)
117 3mc3_A DSRE/DSRF-like family p 50.6 15 0.0005 30.9 4.1 40 49-90 15-54 (134)
118 3u3x_A Oxidoreductase; structu 50.5 93 0.0032 30.6 10.9 92 274-377 27-120 (361)
119 1qkk_A DCTD, C4-dicarboxylate 50.3 54 0.0018 27.1 8.0 103 305-407 4-120 (155)
120 3f6p_A Transcriptional regulat 50.3 89 0.003 24.4 9.0 103 306-408 4-119 (120)
121 3h1g_A Chemotaxis protein CHEY 50.2 92 0.0031 24.7 9.2 104 305-408 6-127 (129)
122 3m6m_D Sensory/regulatory prot 49.6 81 0.0028 25.7 8.9 105 304-408 14-136 (143)
123 3euw_A MYO-inositol dehydrogen 49.5 55 0.0019 31.9 8.9 71 301-377 25-97 (344)
124 2qzj_A Two-component response 49.2 79 0.0027 25.5 8.7 104 304-407 4-120 (136)
125 3lqk_A Dipicolinate synthase s 49.1 23 0.00079 32.1 5.5 41 44-90 2-43 (201)
126 2hy5_A Putative sulfurtransfer 48.8 19 0.00066 29.8 4.6 39 50-90 1-40 (130)
127 2q5c_A NTRC family transcripti 48.4 1.2E+02 0.0041 27.0 10.2 94 289-406 81-181 (196)
128 3kb6_A D-lactate dehydrogenase 48.3 55 0.0019 32.1 8.6 43 337-379 186-233 (334)
129 3rc1_A Sugar 3-ketoreductase; 48.2 56 0.0019 32.1 8.8 71 301-377 49-121 (350)
130 3q2i_A Dehydrogenase; rossmann 48.2 50 0.0017 32.4 8.4 69 303-377 37-107 (354)
131 1zh8_A Oxidoreductase; TM0312, 48.0 69 0.0024 31.2 9.3 70 303-377 43-114 (340)
132 1jbe_A Chemotaxis protein CHEY 48.0 98 0.0034 24.2 9.4 104 304-407 4-124 (128)
133 3i42_A Response regulator rece 47.9 74 0.0025 25.0 8.2 105 305-409 4-123 (127)
134 1k66_A Phytochrome response re 47.4 77 0.0026 25.6 8.4 104 304-407 6-137 (149)
135 2ho3_A Oxidoreductase, GFO/IDH 47.4 60 0.0021 31.3 8.8 71 301-376 22-93 (325)
136 3iz6_A 40S ribosomal protein S 47.3 28 0.00096 33.4 5.8 99 284-383 55-161 (305)
137 1rcu_A Conserved hypothetical 46.8 35 0.0012 30.7 6.2 63 341-405 114-192 (195)
138 2m1z_A LMO0427 protein; homolo 46.7 61 0.0021 25.9 6.9 76 317-407 23-104 (106)
139 2qsj_A DNA-binding response re 46.5 69 0.0024 26.3 8.1 108 304-411 3-127 (154)
140 2qxy_A Response regulator; reg 46.4 68 0.0023 25.9 7.9 106 305-410 5-123 (142)
141 2j48_A Two-component sensor ki 46.2 50 0.0017 25.3 6.7 102 306-407 3-117 (119)
142 3cea_A MYO-inositol 2-dehydrog 45.6 98 0.0034 30.0 10.1 70 301-375 30-101 (346)
143 2hy5_B Intracellular sulfur ox 45.4 23 0.0008 29.8 4.6 39 50-90 6-44 (136)
144 1ydw_A AX110P-like protein; st 44.7 95 0.0032 30.4 9.9 72 301-376 27-102 (362)
145 2glx_A 1,5-anhydro-D-fructose 44.6 88 0.003 30.1 9.5 69 303-376 23-93 (332)
146 3u5c_A 40S ribosomal protein S 44.3 25 0.00086 32.9 4.9 99 284-383 50-156 (252)
147 3cfy_A Putative LUXO repressor 44.3 1.2E+02 0.0042 24.3 9.3 102 306-407 6-121 (137)
148 3n53_A Response regulator rece 43.9 94 0.0032 25.0 8.3 102 305-407 4-121 (140)
149 3ohs_X Trans-1,2-dihydrobenzen 43.0 84 0.0029 30.4 9.1 69 304-377 28-98 (334)
150 3lwz_A 3-dehydroquinate dehydr 42.9 1.6E+02 0.0054 25.2 9.4 90 317-406 39-146 (153)
151 3crn_A Response regulator rece 42.9 1.2E+02 0.0042 23.9 9.1 103 305-407 4-120 (132)
152 1fy2_A Aspartyl dipeptidase; s 42.8 57 0.0019 30.0 7.3 89 288-379 17-123 (229)
153 1i3c_A Response regulator RCP1 42.5 1.3E+02 0.0045 24.5 9.2 104 304-407 8-136 (149)
154 3eul_A Possible nitrate/nitrit 42.2 1.4E+02 0.0047 24.3 9.5 107 304-410 15-137 (152)
155 2a9o_A Response regulator; ess 41.9 1.2E+02 0.004 23.3 9.1 103 306-408 3-118 (120)
156 2qvg_A Two component response 41.7 1.3E+02 0.0045 24.0 9.0 104 304-407 7-134 (143)
157 2zkq_b 40S ribosomal protein S 41.6 28 0.00097 33.4 4.9 98 284-383 51-157 (295)
158 1e2b_A Enzyme IIB-cellobiose; 41.5 25 0.00086 28.1 4.0 60 307-367 7-71 (106)
159 2pl1_A Transcriptional regulat 41.3 1.2E+02 0.0041 23.3 9.6 102 306-407 2-117 (121)
160 2jba_A Phosphate regulon trans 41.0 83 0.0028 24.6 7.4 100 306-408 4-122 (127)
161 3ty2_A 5'-nucleotidase SURE; s 41.0 39 0.0013 31.9 5.7 39 47-92 9-47 (261)
162 3cz5_A Two-component response 40.9 81 0.0028 25.9 7.6 107 304-410 5-127 (153)
163 3eod_A Protein HNR; response r 40.7 94 0.0032 24.5 7.7 105 304-408 7-126 (130)
164 4gqa_A NAD binding oxidoreduct 40.4 1.3E+02 0.0045 30.0 10.3 96 274-377 27-128 (412)
165 2rdm_A Response regulator rece 40.4 1.3E+02 0.0045 23.5 10.1 107 304-410 5-125 (132)
166 1zgz_A Torcad operon transcrip 40.3 1.3E+02 0.0043 23.3 9.3 102 306-407 4-118 (122)
167 3n7t_A Macrophage binding prot 40.0 42 0.0014 31.3 5.9 43 45-90 5-56 (247)
168 3mcu_A Dipicolinate synthase, 39.6 35 0.0012 31.0 5.0 37 47-90 3-41 (207)
169 1p9l_A Dihydrodipicolinate red 39.5 1.1E+02 0.0037 28.5 8.7 73 306-378 2-78 (245)
170 4dad_A Putative pilus assembly 39.2 91 0.0031 25.3 7.6 65 345-409 67-142 (146)
171 4fyk_A Deoxyribonucleoside 5'- 39.2 62 0.0021 27.8 6.3 67 341-408 64-142 (152)
172 3r0j_A Possible two component 39.0 1.5E+02 0.005 26.9 9.7 104 304-407 23-140 (250)
173 3v5n_A Oxidoreductase; structu 38.9 1.3E+02 0.0045 30.2 10.0 74 301-377 61-142 (417)
174 3ff4_A Uncharacterized protein 38.8 36 0.0012 28.0 4.6 39 47-91 2-40 (122)
175 2pq6_A UDP-glucuronosyl/UDP-gl 38.7 20 0.0007 37.1 3.9 38 49-91 8-45 (482)
176 3oet_A Erythronate-4-phosphate 38.5 1.2E+02 0.0042 30.2 9.3 76 304-379 119-213 (381)
177 1ys7_A Transcriptional regulat 38.2 2.1E+02 0.0072 25.3 11.3 104 304-407 7-124 (233)
178 3snk_A Response regulator CHEY 38.1 48 0.0016 26.7 5.5 105 304-408 14-133 (135)
179 1h6d_A Precursor form of gluco 37.8 46 0.0016 33.9 6.4 74 301-376 105-181 (433)
180 3rot_A ABC sugar transporter, 37.8 2.2E+02 0.0075 26.4 11.0 65 345-409 61-127 (297)
181 3e18_A Oxidoreductase; dehydro 37.7 1.1E+02 0.0039 29.9 9.1 71 300-377 25-97 (359)
182 1kgs_A DRRD, DNA binding respo 37.7 2.1E+02 0.0071 25.1 10.4 103 305-407 3-119 (225)
183 3kto_A Response regulator rece 37.5 51 0.0017 26.6 5.6 102 305-409 7-127 (136)
184 2l2q_A PTS system, cellobiose- 37.5 1.2E+02 0.0041 24.0 7.6 81 316-407 21-104 (109)
185 2xzm_B RPS0E; ribosome, transl 37.0 34 0.0012 31.8 4.6 98 285-383 47-153 (241)
186 1gqo_A Dehydroquinase; dehydra 36.9 68 0.0023 27.1 6.0 90 317-406 32-139 (143)
187 2gwr_A DNA-binding response re 36.8 1.8E+02 0.0061 26.1 9.8 105 305-409 6-123 (238)
188 3l6u_A ABC-type sugar transpor 36.6 2.2E+02 0.0076 26.1 10.8 61 345-407 64-125 (293)
189 3a10_A Response regulator; pho 36.3 1.4E+02 0.0048 22.7 9.6 101 306-406 3-115 (116)
190 3dty_A Oxidoreductase, GFO/IDH 36.3 1.4E+02 0.0048 29.7 9.7 73 301-376 36-116 (398)
191 1srr_A SPO0F, sporulation resp 36.1 1.5E+02 0.0051 22.9 8.3 104 305-408 4-121 (124)
192 1zco_A 2-dehydro-3-deoxyphosph 36.1 2.7E+02 0.0094 26.0 11.5 116 278-409 26-157 (262)
193 1h05_A 3-dehydroquinate dehydr 35.9 2E+02 0.0068 24.3 9.3 91 317-407 34-142 (146)
194 3c97_A Signal transduction his 35.9 1.7E+02 0.0057 23.4 9.6 104 305-408 11-130 (140)
195 4gi5_A Quinone reductase; prot 35.8 35 0.0012 32.7 4.6 43 44-89 17-60 (280)
196 2iz6_A Molybdenum cofactor car 35.6 24 0.00082 31.2 3.2 64 342-408 104-174 (176)
197 1jx7_A Hypothetical protein YC 35.6 39 0.0013 26.9 4.4 39 50-90 2-42 (117)
198 4f3y_A DHPR, dihydrodipicolina 35.2 44 0.0015 31.7 5.3 43 336-378 64-106 (272)
199 1tlt_A Putative oxidoreductase 34.9 82 0.0028 30.2 7.4 70 301-376 27-96 (319)
200 2ixa_A Alpha-N-acetylgalactosa 34.9 1.6E+02 0.0056 29.7 10.0 75 301-376 41-122 (444)
201 3ip3_A Oxidoreductase, putativ 34.5 78 0.0027 30.7 7.2 73 302-377 22-99 (337)
202 3zqu_A Probable aromatic acid 34.1 43 0.0015 30.4 4.8 35 50-90 5-39 (209)
203 3nbm_A PTS system, lactose-spe 34.0 1.6E+02 0.0055 23.4 7.7 60 317-377 24-86 (108)
204 3evn_A Oxidoreductase, GFO/IDH 33.9 45 0.0015 32.4 5.3 71 302-377 27-99 (329)
205 1dcf_A ETR1 protein; beta-alph 33.8 1.8E+02 0.006 23.0 9.7 106 304-409 7-130 (136)
206 3auf_A Glycinamide ribonucleot 33.4 2.1E+02 0.0072 26.2 9.5 111 45-194 18-130 (229)
207 3kcq_A Phosphoribosylglycinami 32.7 78 0.0027 28.8 6.3 43 151-197 72-114 (215)
208 1xhf_A DYE resistance, aerobic 32.5 1.7E+02 0.0058 22.5 9.5 103 305-407 4-119 (123)
209 1mvo_A PHOP response regulator 32.4 1.8E+02 0.0062 22.8 10.0 106 305-410 4-123 (136)
210 2uyg_A 3-dehydroquinate dehydr 31.7 99 0.0034 26.3 6.2 91 317-407 31-140 (149)
211 3h05_A Uncharacterized protein 31.7 39 0.0013 29.7 4.0 67 290-371 84-151 (177)
212 3m2t_A Probable dehydrogenase; 31.6 72 0.0025 31.4 6.4 73 300-377 26-100 (359)
213 1yio_A Response regulatory pro 31.4 1.7E+02 0.0057 25.4 8.4 103 305-407 5-121 (208)
214 3nvt_A 3-deoxy-D-arabino-heptu 31.0 4.1E+02 0.014 26.4 11.9 117 276-409 144-276 (385)
215 1xea_A Oxidoreductase, GFO/IDH 31.0 1.2E+02 0.0041 29.1 7.9 70 301-376 24-94 (323)
216 3od5_A Caspase-6; caspase doma 30.8 43 0.0015 31.9 4.4 45 44-89 15-66 (278)
217 1uqr_A 3-dehydroquinate dehydr 30.8 65 0.0022 27.5 4.9 89 317-405 33-139 (154)
218 1p6q_A CHEY2; chemotaxis, sign 30.2 1.6E+02 0.0056 22.8 7.6 104 305-408 7-127 (129)
219 2ayx_A Sensor kinase protein R 29.8 3.1E+02 0.011 24.9 10.3 62 346-407 174-246 (254)
220 3h11_B Caspase-8; cell death, 29.5 48 0.0016 31.4 4.5 45 44-89 11-69 (271)
221 3kcn_A Adenylate cyclase homol 29.2 2.3E+02 0.0078 22.9 8.5 102 305-407 5-122 (151)
222 3sir_A Caspase; hydrolase; 2.6 29.1 39 0.0013 31.8 3.7 45 44-89 14-64 (259)
223 2czc_A Glyceraldehyde-3-phosph 28.9 1.8E+02 0.0062 28.2 8.8 82 290-376 16-110 (334)
224 3rc1_A Sugar 3-ketoreductase; 28.9 2.1E+02 0.0071 27.8 9.3 21 153-173 81-101 (350)
225 3g1w_A Sugar ABC transporter; 28.6 3.3E+02 0.011 25.1 10.6 62 345-408 61-123 (305)
226 3to5_A CHEY homolog; alpha(5)b 28.4 2.4E+02 0.0084 23.0 8.6 104 304-407 12-132 (134)
227 1nw9_B Caspase 9, apoptosis-re 28.1 52 0.0018 31.3 4.5 45 44-89 15-66 (277)
228 1m72_A Caspase-1; caspase, cys 28.0 45 0.0016 31.7 4.0 45 44-89 26-76 (272)
229 1tmy_A CHEY protein, TMY; chem 28.0 2E+02 0.0069 21.9 8.6 102 305-406 3-119 (120)
230 1qzu_A Hypothetical protein MD 28.0 62 0.0021 29.3 4.7 40 45-90 15-55 (206)
231 4gmf_A Yersiniabactin biosynth 27.7 67 0.0023 32.0 5.4 91 273-377 7-102 (372)
232 2j32_A Caspase-3; Pro-caspase3 27.5 47 0.0016 31.1 4.0 45 44-89 10-61 (250)
233 3gvx_A Glycerate dehydrogenase 27.3 2E+02 0.0068 27.4 8.5 56 337-404 165-225 (290)
234 3l49_A ABC sugar (ribose) tran 27.3 2E+02 0.0068 26.5 8.6 99 289-407 21-120 (291)
235 2d1p_B TUSC, hypothetical UPF0 27.3 57 0.002 26.4 4.0 39 50-90 2-40 (119)
236 3p45_A Caspase-6; protease, hu 27.1 61 0.0021 28.6 4.4 45 44-89 38-89 (179)
237 1zh2_A KDP operon transcriptio 27.1 2.1E+02 0.0071 21.8 7.6 102 306-407 3-117 (121)
238 3rqi_A Response regulator prot 27.0 96 0.0033 26.7 5.8 103 304-406 7-123 (184)
239 3a06_A 1-deoxy-D-xylulose 5-ph 27.0 3.7E+02 0.013 26.6 10.4 75 303-377 27-117 (376)
240 3q0i_A Methionyl-tRNA formyltr 26.8 1.8E+02 0.0061 28.1 8.2 42 152-197 76-117 (318)
241 1vli_A Spore coat polysacchari 26.8 2.8E+02 0.0097 27.6 9.6 62 315-378 102-167 (385)
242 4g2n_A D-isomer specific 2-hyd 26.7 2.4E+02 0.0081 27.6 9.1 56 337-404 219-279 (345)
243 2nn3_C Caspase-1; cysteine pro 26.7 55 0.0019 31.7 4.4 45 44-89 54-104 (310)
244 2o4c_A Erythronate-4-phosphate 26.3 1.8E+02 0.006 29.0 8.1 76 304-379 116-210 (380)
245 1im3_D Cytomegalovirus protein 26.2 18 0.0006 26.7 0.5 21 508-533 6-26 (95)
246 1qtn_A Caspase-8; apoptosis, d 26.1 69 0.0023 27.8 4.5 45 44-89 17-75 (164)
247 2dko_A Caspase-3; low barrier 26.1 59 0.002 27.6 4.0 44 45-89 11-61 (146)
248 3tml_A 2-dehydro-3-deoxyphosph 26.0 4.3E+02 0.015 25.1 11.7 103 274-378 17-140 (288)
249 3qjg_A Epidermin biosynthesis 25.9 99 0.0034 27.1 5.5 35 50-90 6-40 (175)
250 3mm4_A Histidine kinase homolo 25.9 1.9E+02 0.0066 25.3 7.8 107 304-410 61-198 (206)
251 3oqb_A Oxidoreductase; structu 25.7 1.9E+02 0.0064 28.5 8.4 58 315-376 55-114 (383)
252 2r25_B Osmosensing histidine p 25.6 2.5E+02 0.0084 22.1 9.2 105 305-409 3-128 (133)
253 1pyo_A Caspase-2; apoptosis, c 25.6 72 0.0025 27.8 4.5 45 44-89 27-78 (167)
254 3evn_A Oxidoreductase, GFO/IDH 25.6 3.1E+02 0.01 26.2 9.8 21 153-173 59-79 (329)
255 2qv0_A Protein MRKE; structura 25.5 2.5E+02 0.0086 22.2 9.1 104 304-407 9-126 (143)
256 3o74_A Fructose transport syst 25.3 3.7E+02 0.013 24.1 11.3 63 345-410 58-120 (272)
257 1dc7_A NTRC, nitrogen regulati 25.0 92 0.0031 24.1 4.9 103 305-407 4-120 (124)
258 1p2f_A Response regulator; DRR 24.9 1.2E+02 0.0042 26.7 6.3 102 306-408 4-117 (220)
259 3gvp_A Adenosylhomocysteinase 24.8 2.3E+02 0.0078 28.8 8.6 43 337-379 267-310 (435)
260 2b4a_A BH3024; flavodoxin-like 24.8 2.6E+02 0.0088 22.0 9.4 107 303-409 14-132 (138)
261 2oqr_A Sensory transduction pr 24.7 1.9E+02 0.0066 25.5 7.7 104 305-408 5-121 (230)
262 2yq5_A D-isomer specific 2-hyd 24.4 3.4E+02 0.012 26.4 9.8 41 338-378 193-238 (343)
263 3g8r_A Probable spore coat pol 24.4 3.5E+02 0.012 26.5 9.7 62 316-379 80-145 (350)
264 3bbn_B Ribosomal protein S2; s 24.2 2.9E+02 0.0099 25.3 8.5 36 346-383 158-196 (231)
265 3n58_A Adenosylhomocysteinase; 24.2 3.1E+02 0.011 28.0 9.4 43 337-379 294-337 (464)
266 1vl6_A Malate oxidoreductase; 24.2 2E+02 0.0068 28.7 8.0 73 301-374 189-291 (388)
267 1s8n_A Putative antiterminator 24.0 3.4E+02 0.012 23.3 9.2 103 305-407 14-130 (205)
268 2nvw_A Galactose/lactose metab 23.9 2.1E+02 0.0074 29.3 8.6 70 303-376 67-145 (479)
269 1qgu_B Protein (nitrogenase mo 23.7 2.4E+02 0.0083 29.3 9.0 114 284-409 191-335 (519)
270 1xdw_A NAD+-dependent (R)-2-hy 23.5 2.6E+02 0.0089 27.0 8.8 56 337-404 190-250 (331)
271 4b4o_A Epimerase family protei 23.5 69 0.0024 30.2 4.5 19 71-90 14-32 (298)
272 3q9s_A DNA-binding response re 23.0 2.7E+02 0.0094 25.2 8.5 106 305-410 38-156 (249)
273 2p2s_A Putative oxidoreductase 23.0 1.2E+02 0.0041 29.3 6.2 69 303-376 27-97 (336)
274 3e9m_A Oxidoreductase, GFO/IDH 22.7 4.2E+02 0.014 25.2 10.2 21 153-173 59-79 (330)
275 3m9w_A D-xylose-binding peripl 22.7 4.6E+02 0.016 24.2 14.1 100 288-406 17-118 (313)
276 3l07_A Bifunctional protein fo 22.6 2.4E+02 0.0083 26.8 7.9 63 291-353 148-212 (285)
277 1d4o_A NADP(H) transhydrogenas 22.3 1.1E+02 0.0038 26.6 4.9 134 273-408 23-180 (184)
278 3btv_A Galactose/lactose metab 22.1 1.5E+02 0.0052 30.0 6.9 70 303-376 48-126 (438)
279 2wqp_A Polysialic acid capsule 22.1 2.7E+02 0.0094 27.3 8.4 61 316-378 93-157 (349)
280 1qv9_A F420-dependent methylen 21.9 1E+02 0.0035 28.4 4.7 99 276-391 8-117 (283)
281 4ehd_A Caspase-3; caspase, apo 21.9 69 0.0024 30.5 4.0 45 44-89 38-89 (277)
282 3c3m_A Response regulator rece 21.9 3E+02 0.01 21.7 9.5 106 305-410 4-125 (138)
283 3tqq_A Methionyl-tRNA formyltr 21.7 3.2E+02 0.011 26.3 8.8 108 49-194 2-109 (314)
284 3uug_A Multiple sugar-binding 21.7 4.9E+02 0.017 24.2 13.8 102 288-407 18-121 (330)
285 3cu5_A Two component transcrip 21.6 3.1E+02 0.011 21.8 8.2 62 346-407 50-122 (141)
286 3jtm_A Formate dehydrogenase, 21.6 3.2E+02 0.011 26.7 9.0 56 337-404 212-272 (351)
287 3l4e_A Uncharacterized peptida 21.5 1.4E+02 0.0047 26.9 5.8 75 304-379 27-123 (206)
288 1vs1_A 3-deoxy-7-phosphoheptul 21.5 5.1E+02 0.017 24.3 11.7 117 277-409 40-172 (276)
289 4fc5_A TON_0340, putative unch 21.5 85 0.0029 29.7 4.4 40 49-90 41-85 (270)
290 3p2o_A Bifunctional protein fo 21.5 2.7E+02 0.0092 26.5 8.0 64 291-354 147-212 (285)
291 2h54_A Caspase-1; allosteric s 21.3 99 0.0034 27.2 4.6 44 45-89 36-85 (178)
292 4a5o_A Bifunctional protein fo 21.3 2.8E+02 0.0096 26.3 8.1 62 292-353 149-212 (286)
293 2lpm_A Two-component response 21.2 42 0.0014 27.5 2.0 35 43-86 2-36 (123)
294 3h75_A Periplasmic sugar-bindi 21.1 3.7E+02 0.013 25.5 9.5 35 345-379 62-96 (350)
295 2dc1_A L-aspartate dehydrogena 20.9 1.5E+02 0.0053 26.8 6.2 42 337-378 41-83 (236)
296 2qip_A Protein of unknown func 20.8 1.9E+02 0.0066 24.7 6.4 62 288-352 96-159 (165)
297 1b0a_A Protein (fold bifunctio 20.7 3.5E+02 0.012 25.7 8.6 64 291-354 146-211 (288)
298 1dxy_A D-2-hydroxyisocaproate 20.7 3.5E+02 0.012 26.1 9.0 41 338-378 190-235 (333)
299 3i23_A Oxidoreductase, GFO/IDH 20.6 1.8E+02 0.0063 28.2 7.0 70 301-376 24-96 (349)
300 3ngx_A Bifunctional protein fo 20.6 3.9E+02 0.013 25.2 8.9 52 302-353 148-201 (276)
301 3dfz_A SIRC, precorrin-2 dehyd 20.5 2E+02 0.007 26.1 6.7 121 274-407 32-162 (223)
302 3rfo_A Methionyl-tRNA formyltr 20.4 4.1E+02 0.014 25.5 9.3 111 46-194 1-111 (317)
303 2acv_A Triterpene UDP-glucosyl 20.4 68 0.0023 32.9 3.9 38 49-91 9-48 (463)
304 3h9u_A Adenosylhomocysteinase; 20.3 93 0.0032 31.7 4.7 43 337-379 258-301 (436)
305 3pdi_A Nitrogenase MOFE cofact 20.3 2.2E+02 0.0075 29.3 7.7 33 48-90 331-363 (483)
306 1mx3_A CTBP1, C-terminal bindi 20.2 3.4E+02 0.012 26.5 8.8 56 337-404 215-275 (347)
No 1
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=9.4e-37 Score=318.14 Aligned_cols=351 Identities=14% Similarity=0.077 Sum_probs=258.6
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+|||+++++.++|..+|.+..+..+++.| +| |+|+++++.... .. ...+ ......
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g-~~v~v~~~~~~~-----------------~~---~~~~--~~~~~~ 58 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DP-ESIVVFASTQNA-----------------EE---AHAY--DKTLDY 58 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CG-GGEEEEEECSSH-----------------HH---HHHH--HTTCSS
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh--cC-CeEEEEECCCCc-----------------cc---hhhh--ccccce
Confidence 48999999999999999999999999999 55 999999983211 00 0000 000000
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-C-EEEEEcCCcHHHHhhhhc
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-F-VVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~-vi~~~h~~~~~~~~~~~~ 206 (562)
.-.++.. ............+.+++++.+||+||++.+....++ ..+.++.+ | +|.++|+....+...
T Consensus 59 ~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~~~~~~--- 127 (394)
T 3okp_A 59 EVIRWPR-----SVMLPTPTTAHAMAEIIREREIDNVWFGAAAPLALM---AGTAKQAGASKVIASTHGHEVGWSML--- 127 (394)
T ss_dssp EEEEESS-----SSCCSCHHHHHHHHHHHHHTTCSEEEESSCTTGGGG---HHHHHHTTCSEEEEECCSTHHHHTTS---
T ss_pred EEEEccc-----cccccchhhHHHHHHHHHhcCCCEEEECCcchHHHH---HHHHHhcCCCcEEEEeccchhhhhhc---
Confidence 0011110 000111123456788888999999999987766444 22344434 4 888999764432211
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCcc-ccccccCCCCcCc-c--hhhhHHhhcCCCCCccEE
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIV-CNVHGVNPKFLEI-G--EKKMEQQQNGNKAFTKGA 276 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~-~~v~GVd~~~~~~-~--~~~~~~~~~~~~~~~~~i 276 (562)
...+.+.+++.+. +|.++++|+..++.. ...+ +..+|+|.+.+.+ . .....+...+++++.+.+
T Consensus 128 -----~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 201 (394)
T 3okp_A 128 -----PGSRQSLRKIGTE-VDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVI 201 (394)
T ss_dssp -----HHHHHHHHHHHHH-CSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEE
T ss_pred -----chhhHHHHHHHHh-CCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEE
Confidence 1222223333343 799999998887732 2233 3346999987765 2 223345567777777999
Q ss_pred EEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEEEccC
Q 008544 277 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFLNPST 354 (562)
Q Consensus 277 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v~pS~ 354 (562)
+|+|++.+.||++.+++++..+.++.|+++|+|+|+|++.+.+++.+..+..++.+++.. ++..++|+.+|++|+||.
T Consensus 202 ~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~ 281 (394)
T 3okp_A 202 ACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPAR 281 (394)
T ss_dssp EEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCC
T ss_pred EEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCc
Confidence 999999999999999999999999999999999999999999998885554567777776 566699999999999999
Q ss_pred C-------CCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----
Q 008544 355 T-------DVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT---- 418 (562)
Q Consensus 355 ~-------E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar---- 418 (562)
. |++|++++|||+||+|||+++.++ .|++.++ +|++++ |+++++++|.++++|++. .|+++++
T Consensus 282 ~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~ 360 (394)
T 3okp_A 282 TRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVE 360 (394)
T ss_dssp CBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 8 999999999999999999999998 8999998 999986 999999999999998875 7777766
Q ss_pred hcCCHHHHHHHHHHHHHhcCcccc
Q 008544 419 HQLSWESATERFLQVAELVGDVVT 442 (562)
Q Consensus 419 ~~~sw~~~~~~~~~~y~~~~~~~~ 442 (562)
++|+|+.+++++.++|+.......
T Consensus 361 ~~~s~~~~~~~~~~~~~~~~r~~~ 384 (394)
T 3okp_A 361 AEWSWEIMGERLTNILQSEPRKLA 384 (394)
T ss_dssp HHTBHHHHHHHHHHHHHSCCC---
T ss_pred HhCCHHHHHHHHHHHHHHhccCcc
Confidence 579999999999999998774443
No 2
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=1.2e-36 Score=321.77 Aligned_cols=370 Identities=16% Similarity=0.154 Sum_probs=252.8
Q ss_pred cCCeEEEEecccCC-CcccccccHHHHHHHHHHcCCCeEEEEeecCCcccccc--------------c---cCCCceeCC
Q 008544 48 KQQHIAIFTTASLP-WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ--------------V---YPGNITFAS 109 (562)
Q Consensus 48 ~~~rI~ivt~~~~P-~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~--------------~---~p~~i~~~~ 109 (562)
++|||++++..++| ..||.+..+..++++|+++| |+|+++++......... . ..+++.+..
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLG-HEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYR 79 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTT-CEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEE
Confidence 36999999988888 78998999999999999998 99999998543221110 0 001111111
Q ss_pred chhhHHHHHHHhhhccCCCCCccccccc---cc-chhccchhhhHHh-HHhhc-CcCCCcEEEecCCchhhhhhchHHHH
Q 008544 110 PKEQEAYVRWWLEDRTGFTSTFDTRFYP---GK-FAADKKSILAVGD-ITEII-PDEEADIAVLEEPEHLTWFHHGKRWK 183 (562)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~y~---~r-~~~~~~~~~~~~~-l~~~i-~~~~pDvV~~~~~~~~~~~~~~~~~~ 183 (562)
... .... +...|. .. ............. +.+.+ +..+|||||+|.+... +. +..++
T Consensus 80 ~~~-------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~-~~--~~~~~ 141 (439)
T 3fro_A 80 IGG-------------GLLD--SEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTV-FA--GALIK 141 (439)
T ss_dssp EES-------------GGGG--CSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGH-HH--HHHHH
T ss_pred ecc-------------hhcc--ccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhh-hh--HHHHh
Confidence 000 0000 000000 00 0000000001112 22222 3679999999976543 22 22233
Q ss_pred hhcC-CEEEEEcCCcHHHHhhhh--chHHH---HHHHHHHHHHHHHHhccEEEEcChhhhcc-------CCCcc-ccccc
Q 008544 184 AKFR-FVVGIVHTNYLEYVKREK--NDRLQ---AFLLEFVNSWLARVHCHKVIRLSAATQEY-------PNSIV-CNVHG 249 (562)
Q Consensus 184 ~~~~-~vi~~~h~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-------~~~~~-~~v~G 249 (562)
+..+ |+|.++|+.+........ ...+. ......+.+...+. +|.++++|+..++. +...+ +..+|
T Consensus 142 ~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ng 220 (439)
T 3fro_A 142 KYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYI-ADIVTTVSRGYLIDEWGFFRNFEGKITYVFNG 220 (439)
T ss_dssp HHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHH-CSEEEESCHHHHHHTHHHHGGGTTSEEECCCC
T ss_pred hccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhhh-ccEEEecCHHHHHHHhhhhhhcCCceeecCCC
Confidence 3334 899999987432110000 00000 00000122233333 79999999877763 23333 34479
Q ss_pred cCCCCcCcc--------hhhhHHhhcCCCCCccEEEEEeecc-ccCCHHHHHHHHHHHHHhc--CCcEEEEEeCCCCH--
Q 008544 250 VNPKFLEIG--------EKKMEQQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYHKEL--AGLEMDLYGNGEDF-- 316 (562)
Q Consensus 250 Vd~~~~~~~--------~~~~~~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~--~~~~l~ivG~g~~~-- 316 (562)
+|.+.|.+. .....+...+++++ ++++|+|++. +.||++.+++|+..+.++. ++++|+++|+|+..
T Consensus 221 vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~ 299 (439)
T 3fro_A 221 IDCSFWNESYLTGSRDERKKSLLSKFGMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELE 299 (439)
T ss_dssp CCTTTSCGGGSCSCHHHHHHHHHHHHTCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHH
T ss_pred CCchhcCcccccchhhhhHHHHHHHcCCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHH
Confidence 999888765 23334555677776 9999999999 9999999999999998876 89999999999876
Q ss_pred HHHHHHHHhcCCeeEEeCC-CC--ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee
Q 008544 317 DQIQRAAKKLKLVVRVYPG-RD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY 392 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~-~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~ 392 (562)
+.+++++++++ ++.++.+ .+ +..++|+.||++|+||..|+||++++||||||+|||+|+.++ .|++.++ +|+++
T Consensus 300 ~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~ 377 (439)
T 3fro_A 300 GWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILV 377 (439)
T ss_dssp HHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEE
T ss_pred HHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEe
Confidence 89999999999 6665555 33 345899999999999999999999999999999999999998 8888877 88887
Q ss_pred C--CHHHHHHHHHHHHh-CCCC--CccHHHH---hcCCHHHHHHHHHHHHHhcCcc
Q 008544 393 D--GRNGFVEATLKALA-EEPA--QPTDAQT---HQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 393 ~--d~~~la~~i~~ll~-~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
+ |+++++++|.++++ +++. .|+++++ ++|+|+.+++++.++|+.....
T Consensus 378 ~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 433 (439)
T 3fro_A 378 KAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDR 433 (439)
T ss_dssp CTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHTCSCC
T ss_pred CCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHh
Confidence 5 99999999999999 7775 7777777 6899999999999999988743
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.6e-35 Score=314.05 Aligned_cols=367 Identities=14% Similarity=0.115 Sum_probs=246.9
Q ss_pred CCeEEEEecccCC-------CcccccccHHHHHHHHHHcCCCeEEEEeecCCcccccc-ccCCCceeCCchhhHHHHHHH
Q 008544 49 QQHIAIFTTASLP-------WLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQ-VYPGNITFASPKEQEAYVRWW 120 (562)
Q Consensus 49 ~~rI~ivt~~~~P-------~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~-~~p~~i~~~~~~~~~~~~~~~ 120 (562)
.|||++++..++| ..||.+..+..++++|.++| |+|+++++......... ...+++.+..
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~v~v~~----------- 87 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQG-IEVDIYTRATRPSQGEIVRVAENLRVIN----------- 87 (438)
T ss_dssp CCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTT-CEEEEEEECCCGGGCSEEEEETTEEEEE-----------
T ss_pred hheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcC-CEEEEEecCCCCCCcccccccCCeEEEE-----------
Confidence 3899999998888 45788888999999999998 99999998431110000 0001111110
Q ss_pred hhhccCCCCCcccccccccchhccchhhh-HHhHHhh-cCcC-CCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCC
Q 008544 121 LEDRTGFTSTFDTRFYPGKFAADKKSILA-VGDITEI-IPDE-EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTN 196 (562)
Q Consensus 121 ~~~~~~~~~~~~i~~y~~r~~~~~~~~~~-~~~l~~~-i~~~-~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~ 196 (562)
....+...+. .... ...+.. ...+.+. +++. +||+||++..... ++ +..+++..+ |+|.++|+.
T Consensus 88 ----~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~-~~--~~~~~~~~~~p~v~~~h~~ 155 (438)
T 3c48_A 88 ----IAAGPYEGLS--KEEL---PTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSG-QV--GWLLRDLWRIPLIHTAHTL 155 (438)
T ss_dssp ----ECCSCSSSCC--GGGG---GGGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHH-HH--HHHHHHHHTCCEEEECSSC
T ss_pred ----ecCCCccccc--hhHH---HHHHHHHHHHHHHHHHhccCCCCEEEeCCccHH-HH--HHHHHHHcCCCEEEEecCC
Confidence 0000000000 0000 000000 1112233 3333 4999999874322 22 222344334 899999977
Q ss_pred cHHHHhhhhc-hHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcchhhh---HH
Q 008544 197 YLEYVKREKN-DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGEKKM---EQ 264 (562)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~~~~---~~ 264 (562)
+......... ..........+.+++.+. +|.++++|+..++.. ...+ +..+|+|...+.+..... .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r 234 (438)
T 3c48_A 156 AAVKNSYRDDSDTPESEARRICEQQLVDN-ADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSR 234 (438)
T ss_dssp HHHHSCC----CCHHHHHHHHHHHHHHHH-CSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHH
T ss_pred cccccccccccCCcchHHHHHHHHHHHhc-CCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhH
Confidence 5432111000 000111222233333443 899999998887732 2223 334699988776543322 45
Q ss_pred hhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcC--CcEEEEEeC----CCCHHHHHHHHHhcCCe--eEEeCCC
Q 008544 265 QQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELA--GLEMDLYGN----GEDFDQIQRAAKKLKLV--VRVYPGR 336 (562)
Q Consensus 265 ~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~--~~~l~ivG~----g~~~~~l~~~~~~l~l~--~~~~~~~ 336 (562)
...+++++.++++|+|++.+.||++.+++|+..+.++.| +++|+++|. |+..+.+++.++++++. +.+.+..
T Consensus 235 ~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~ 314 (438)
T 3c48_A 235 RELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPR 314 (438)
T ss_dssp HHTTCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCC
T ss_pred HhcCCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCC
Confidence 566777778899999999999999999999999998877 799999999 77788999999998864 6666665
Q ss_pred --CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC
Q 008544 337 --DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 337 --~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~ 411 (562)
+++.++|+.||++|+||..|+||++++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++.
T Consensus 315 ~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~ 394 (438)
T 3c48_A 315 PPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 394 (438)
T ss_dssp CHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHH
T ss_pred ChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHH
Confidence 4556999999999999999999999999999999999999998 99999999999985 999999999999998775
Q ss_pred --CccHHHH---hcCCHHHHHHHHHHHHHhcCcc
Q 008544 412 --QPTDAQT---HQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 412 --~l~~~ar---~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
+|+++++ ++|+|+.+++++.++|+.....
T Consensus 395 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 395 RIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhh
Confidence 7777776 4499999999999999987743
No 4
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=3.4e-35 Score=307.31 Aligned_cols=348 Identities=15% Similarity=0.124 Sum_probs=247.1
Q ss_pred EEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCCCccc
Q 008544 54 IFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTSTFDT 133 (562)
Q Consensus 54 ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 133 (562)
+.+..| |..||++..+..++++|.++| |+|+++++.... ......+++.+..... .....
T Consensus 18 ~~~~~~-p~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~--~~~~~~~~i~~~~~~~----------------~~~~~ 77 (394)
T 2jjm_A 18 IGITCY-PSVGGSGVVGTELGKQLAERG-HEIHFITSGLPF--RLNKVYPNIYFHEVTV----------------NQYSV 77 (394)
T ss_dssp EEEECC-C--CHHHHHHHHHHHHHHHTT-CEEEEECSSCC------CCCTTEEEECCCC----------------C----
T ss_pred eehhcC-CCCCCHHHHHHHHHHHHHhCC-CEEEEEeCCCCC--cccccCCceEEEeccc----------------ccccc
Confidence 555555 668999999999999999998 999999873210 0000011221111110 00000
Q ss_pred ccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhh----cCCEEEEEcCCcHHHHhhhhchHH
Q 008544 134 RFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAK----FRFVVGIVHTNYLEYVKREKNDRL 209 (562)
Q Consensus 134 ~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~----~~~vi~~~h~~~~~~~~~~~~~~~ 209 (562)
..++ .........+.+++++.+||+||++......+. ..+.++ ..|+|.++|+........ . .
T Consensus 78 ~~~~------~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~---~~~~~~~~~~~~p~v~~~h~~~~~~~~~--~-~- 144 (394)
T 2jjm_A 78 FQYP------PYDLALASKMAEVAQRENLDILHVHYAIPHAIC---AYLAKQMIGERIKIVTTLHGTDITVLGS--D-P- 144 (394)
T ss_dssp CCSC------CHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHH---HHHHHHHTTTCSEEEEECCHHHHHTTTT--C-T-
T ss_pred cccc------cccHHHHHHHHHHHHHcCCCEEEEcchhHHHHH---HHHHHHhhcCCCCEEEEEecCcccccCC--C-H-
Confidence 0000 001112344677788889999999976544222 112222 248899999643211111 0 0
Q ss_pred HHHHHHHHHHHHHHHhccEEEEcChhhhccC------C-CccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeec
Q 008544 210 QAFLLEFVNSWLARVHCHKVIRLSAATQEYP------N-SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 210 ~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~-~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
..+.+.+.+.+. +|.++++|+..++.. . +..+..+|+|.+.+.+......+...+++++.+.++|+|++
T Consensus 145 ---~~~~~~~~~~~~-ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 220 (394)
T 2jjm_A 145 ---SLNNLIRFGIEQ-SDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNF 220 (394)
T ss_dssp ---TTHHHHHHHHHH-SSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEEECCC
T ss_pred ---HHHHHHHHHHhh-CCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEEeecc
Confidence 111222233333 799999998887731 2 22334469999887765554555666776668899999999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHhhcCEEEEccCCCCCcH
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFHDYKVFLNPSTTDVVCT 360 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~ 360 (562)
.+.||++.+++|+..+.++ ++++|+++|+|++.+++++.++++++. +.+.+..++..++|+.+|++|+||..|++|+
T Consensus 221 ~~~Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~ 299 (394)
T 2jjm_A 221 RKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGL 299 (394)
T ss_dssp CGGGTHHHHHHHHHHHHHS-SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCH
T ss_pred ccccCHHHHHHHHHHHHhh-CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCch
Confidence 9999999999999999876 679999999999999999999998864 5566778888899999999999999999999
Q ss_pred HHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHH
Q 008544 361 ATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFL 431 (562)
Q Consensus 361 ~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~ 431 (562)
+++|||+||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++. +|+++++ +.|+|+.+++++.
T Consensus 300 ~~~EAma~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 379 (394)
T 2jjm_A 300 VLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYE 379 (394)
T ss_dssp HHHHHHHTTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999988 99999999999986 999999999999998875 6777766 7899999999999
Q ss_pred HHHHhcCc
Q 008544 432 QVAELVGD 439 (562)
Q Consensus 432 ~~y~~~~~ 439 (562)
++|+....
T Consensus 380 ~~~~~~~~ 387 (394)
T 2jjm_A 380 TIYYDVLR 387 (394)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHHh
Confidence 99998773
No 5
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=1e-34 Score=305.89 Aligned_cols=349 Identities=13% Similarity=0.082 Sum_probs=247.6
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCC
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
++|||+++++. +..||++.....++++|.++| |+|++++.... ...+ ... ..+...+.. .
T Consensus 39 ~~mkIl~v~~~--~~~GG~~~~~~~l~~~L~~~G-~~v~v~~~~~~----~~~~---------~~~-~~~~~~~~~-~-- 98 (416)
T 2x6q_A 39 KGRSFVHVNST--SFGGGVAEILHSLVPLLRSIG-IEARWFVIEGP----TEFF---------NVT-KTFHNALQG-N-- 98 (416)
T ss_dssp TTCEEEEEESC--SSSSTHHHHHHHHHHHHHHTT-CEEEEEECCCC----HHHH---------HHH-HHHHHHHTT-C--
T ss_pred hccEEEEEeCC--CCCCCHHHHHHHHHHHHHhCC-CeEEEEEccCC----cchh---------hhh-cccceeecc-c--
Confidence 45899999986 456888888889999999998 99999976210 0000 000 011111100 0
Q ss_pred CCCcccccccccchhccchhh-hHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhc
Q 008544 128 TSTFDTRFYPGKFAADKKSIL-AVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~-~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~ 206 (562)
....+. .. ...... ....+.+.+++.+||+||+|++....+. . +..+..|+|.++|+.+....
T Consensus 99 -~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~Dvv~~~~~~~~~~~---~-~~~~~~p~v~~~h~~~~~~~----- 162 (416)
T 2x6q_A 99 -ESLKLT---EE---MKELYLNVNRENSKFIDLSSFDYVLVHDPQPAALI---E-FYEKKSPWLWRCHIDLSSPN----- 162 (416)
T ss_dssp -CSCCCC---HH---HHHHHHHHHHHHHHSSCGGGSSEEEEESSTTGGGG---G-GSCCCSCEEEECCSCCSSCC-----
T ss_pred -cccccc---HH---HHHHHHHHHHHHHHHHhhcCCCEEEEeccchhhHH---H-HHHhcCCEEEEEccccCCcc-----
Confidence 001111 00 001111 1234667788889999999987665332 1 22222689999997654211
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEE-EcChhhhccCC-Cc-cccccccCCCCcCcc-----hhhhHHhhcCCCCCccEEEE
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVI-RLSAATQEYPN-SI-VCNVHGVNPKFLEIG-----EKKMEQQQNGNKAFTKGAYY 278 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi-~~S~~~~~~~~-~~-~~~v~GVd~~~~~~~-----~~~~~~~~~~~~~~~~~il~ 278 (562)
..+.+.+.+.+.+ +|.++ ++|+..++... .. .+..+|+|+..+.+. .....+...+++++.++++|
T Consensus 163 ----~~~~~~~~~~~~~--~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~ 236 (416)
T 2x6q_A 163 ----REFWEFLRRFVEK--YDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQ 236 (416)
T ss_dssp ----HHHHHHHHHHHTT--SSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEE
T ss_pred ----HHHHHHHHHHHHh--CCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEE
Confidence 1122333334444 46665 67777666332 33 344469988654321 22233455677777899999
Q ss_pred EeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-----HHHHHHHHHhcCC--eeEEeCCCC-----ChHHHHhhc
Q 008544 279 IGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-----FDQIQRAAKKLKL--VVRVYPGRD-----HADPIFHDY 346 (562)
Q Consensus 279 vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-----~~~l~~~~~~l~l--~~~~~~~~~-----~~~~l~~~a 346 (562)
+|++.+.||++.+++|+..+.++.|+++|+|+|+|+. .+.++++++++++ ++.+.|... +..++|+.+
T Consensus 237 vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~a 316 (416)
T 2x6q_A 237 VSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRAS 316 (416)
T ss_dssp ECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHC
T ss_pred EeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhC
Confidence 9999999999999999999998889999999999975 4667888888776 466665332 566999999
Q ss_pred CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH----h
Q 008544 347 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT----H 419 (562)
Q Consensus 347 dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar----~ 419 (562)
|++|+||..|+||++++||||||+|||+++.++ .|++.++.+|++++|+++++++|.++++|++. +|+++++ +
T Consensus 317 d~~v~ps~~E~~~~~~lEAma~G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~ 396 (416)
T 2x6q_A 317 DVILQMSIREGFGLTVTEAMWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396 (416)
T ss_dssp SEEEECCSSCSSCHHHHHHHHTTCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCcCCCccHHHHHHHcCCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 99999999999999999999999999998875 7777776 5
Q ss_pred cCCHHHHHHHHHHHHHhcC
Q 008544 420 QLSWESATERFLQVAELVG 438 (562)
Q Consensus 420 ~~sw~~~~~~~~~~y~~~~ 438 (562)
+|+|+.+++++.++|+...
T Consensus 397 ~fs~~~~~~~~~~~~~~l~ 415 (416)
T 2x6q_A 397 NFIITKHMERYLDILNSLG 415 (416)
T ss_dssp HTBHHHHHHHHHHHHHTC-
T ss_pred HcCHHHHHHHHHHHHHHhh
Confidence 8999999999999998653
No 6
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.2e-34 Score=313.04 Aligned_cols=376 Identities=13% Similarity=0.067 Sum_probs=251.1
Q ss_pred hhccCCeEEEEecccCCC-----------cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeC--Cch
Q 008544 45 MDRKQQHIAIFTTASLPW-----------LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFA--SPK 111 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~-----------~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~--~~~ 111 (562)
|+++ |||+++++.++|. .||++..+..++++|.++| |+|+|+++...... .+.|....... ...
T Consensus 4 m~~~-MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G-~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~g 80 (499)
T 2r60_A 4 MTRI-KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMG-VQVDIITRRIKDEN-WPEFSGEIDYYQETNK 80 (499)
T ss_dssp ---C-CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTT-CEEEEEEECCCBTT-BGGGCCSEEECTTCSS
T ss_pred cccc-ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcC-CeEEEEeCCCCccc-ccchhhhHHhccCCCC
Confidence 4444 9999999988773 5888888999999999998 99999987331100 00111000000 000
Q ss_pred hhHHHHHHHhhhccCCCCCcccccccc-cchhccchhhhHHhHHhhcCc--CCCcEEEecCCchhhhhhchHHHHhhcC-
Q 008544 112 EQEAYVRWWLEDRTGFTSTFDTRFYPG-KFAADKKSILAVGDITEIIPD--EEADIAVLEEPEHLTWFHHGKRWKAKFR- 187 (562)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~y~~-r~~~~~~~~~~~~~l~~~i~~--~~pDvV~~~~~~~~~~~~~~~~~~~~~~- 187 (562)
.++...+.......+. ....... .....+.+++++ .+|||||+|.... .++ +..+++..+
T Consensus 81 -----------v~v~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~Divh~~~~~~-~~~--~~~~~~~~~~ 144 (499)
T 2r60_A 81 -----------VRIVRIPFGGDKFLPKEELWPYLH--EYVNKIINFYREEGKFPQVVTTHYGDG-GLA--GVLLKNIKGL 144 (499)
T ss_dssp -----------EEEEEECCSCSSCCCGGGCGGGHH--HHHHHHHHHHHHHTCCCSEEEEEHHHH-HHH--HHHHHHHHCC
T ss_pred -----------eEEEEecCCCcCCcCHHHHHHHHH--HHHHHHHHHHHhcCCCCCEEEEcCCcc-hHH--HHHHHHhcCC
Confidence 0000000000000000 0000000 012345666666 5899999997542 223 233444444
Q ss_pred CEEEEEcCCcHHHHhhhhc-----hHHHHH----HHHHHHHHHHHHhccEEEEcChhhhccCC--------------Ccc
Q 008544 188 FVVGIVHTNYLEYVKREKN-----DRLQAF----LLEFVNSWLARVHCHKVIRLSAATQEYPN--------------SIV 244 (562)
Q Consensus 188 ~vi~~~h~~~~~~~~~~~~-----~~~~~~----~~~~~~~~~~~~~ad~vi~~S~~~~~~~~--------------~~~ 244 (562)
|+|.++|+.+......... ..+... ....+.+.+.+. +|.++++|+..++... ..+
T Consensus 145 p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki 223 (499)
T 2r60_A 145 PFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSY-ADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKF 223 (499)
T ss_dssp CEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHH-CSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGE
T ss_pred cEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhc-CCEEEECCHHHHHHHHhhhcccccccccCCCCe
Confidence 8999999775433221100 111111 111222333333 8999999988877322 122
Q ss_pred -ccccccCCCCcCcchh----hhHHhhcC-----CCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCC-cEEEEEeC-
Q 008544 245 -CNVHGVNPKFLEIGEK----KMEQQQNG-----NKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG-LEMDLYGN- 312 (562)
Q Consensus 245 -~~v~GVd~~~~~~~~~----~~~~~~~~-----~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~-~~l~ivG~- 312 (562)
+..+|+|.+.|.+... ...+...+ .+++.++|+|+|++.+.||++.+++|+..+.++.++ ++|+|+|+
T Consensus 224 ~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~ 303 (499)
T 2r60_A 224 SVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGI 303 (499)
T ss_dssp EECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSC
T ss_pred EEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCC
Confidence 2236999887765432 23333444 455678999999999999999999999999876555 58999998
Q ss_pred -CC------C-------HHHHHHHHHhcCCe--eEEeCCC--CChHHHHhhc----CEEEEccCCCCCcHHHHHHHHcCC
Q 008544 313 -GE------D-------FDQIQRAAKKLKLV--VRVYPGR--DHADPIFHDY----KVFLNPSTTDVVCTATAEALAMGK 370 (562)
Q Consensus 313 -g~------~-------~~~l~~~~~~l~l~--~~~~~~~--~~~~~l~~~a----dv~v~pS~~E~~~~~~lEAma~G~ 370 (562)
|+ . .+++++.++++++. +.+++.. +++.++|+.| |++|+||..|+||++++||||||+
T Consensus 304 ~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~ 383 (499)
T 2r60_A 304 ENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGL 383 (499)
T ss_dssp SBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTC
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCC
Confidence 43 1 67899999998875 5666664 5666999999 999999999999999999999999
Q ss_pred cEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHHhcCcc
Q 008544 371 IVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 371 PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
|||+|+.++ .|++.++.+|++++ |+++++++|.++++|++. +|+++++ ++|+|+.+++++.++|+.....
T Consensus 384 PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~~~ 462 (499)
T 2r60_A 384 PAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVIQEIADR 462 (499)
T ss_dssp CEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHHHHHHHC
T ss_pred CEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 999999988 99999999999985 999999999999998875 7777776 5599999999999999987643
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=4.3e-34 Score=307.38 Aligned_cols=375 Identities=14% Similarity=0.050 Sum_probs=245.7
Q ss_pred CeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccc-----------------ccc---CCCcee
Q 008544 50 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQK-----------------QVY---PGNITF 107 (562)
Q Consensus 50 ~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~-----------------~~~---p~~i~~ 107 (562)
|||+++++.++|. .||++..+..++++|.++| |+|+|+++........ .++ .+++.+
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G-~~V~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 79 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADG-VDARVLLPAFPDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGI 79 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTT-CEEEEEEECCHHHHHHCTTCEEEEEECCTTCCEEEEEEEETTEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcC-CEEEEEecCccccccccccceeEEEecccCCcEEEEEEEECCcEE
Confidence 6999999988885 6888899999999999998 9999999843110000 000 011111
Q ss_pred CCchhhHHHHHHHhhhccC-CCCCcccccccccchhccchhhhHHhHHhhcC----cCCCcEEEecCCchhhhhhchHHH
Q 008544 108 ASPKEQEAYVRWWLEDRTG-FTSTFDTRFYPGKFAADKKSILAVGDITEIIP----DEEADIAVLEEPEHLTWFHHGKRW 182 (562)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~----~~~pDvV~~~~~~~~~~~~~~~~~ 182 (562)
...... .+ + .+.. .........|+. ...+.......+.++++ +.+|||||+|.+... ++ +..+
T Consensus 80 ~~~~~~-~~---~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~-~~--~~~~ 147 (485)
T 2qzs_A 80 YLIDAP-HL---Y--DRPGSPYHDTNLFAYTD---NVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAG-LA--PAYL 147 (485)
T ss_dssp EEEECH-HH---H--CCSSCSSBCTTSCBCTT---HHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGT-TH--HHHH
T ss_pred EEEeCh-hh---c--cCCCCccCCcccCCCCc---hHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchh-HH--HHHH
Confidence 000000 00 0 0000 000000000000 00010011223444444 378999999985432 22 2223
Q ss_pred H-hhcC-CEEEEEcCCcHHH-H-----hhhhch--HHH-----HHHHHHHHHHHHHHhccEEEEcChhhhccCC------
Q 008544 183 K-AKFR-FVVGIVHTNYLEY-V-----KREKND--RLQ-----AFLLEFVNSWLARVHCHKVIRLSAATQEYPN------ 241 (562)
Q Consensus 183 ~-~~~~-~vi~~~h~~~~~~-~-----~~~~~~--~~~-----~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~------ 241 (562)
. +..+ |+|.++|+.+... . ...+.. .+. ......+.+...+. +|.++++|+..++...
T Consensus 148 ~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ad~vi~~S~~~~~~~~~~~~~~ 226 (485)
T 2qzs_A 148 AARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYY-ADHITAVSPTYAREITEPQFAY 226 (485)
T ss_dssp HHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHH-CSEEEESSHHHHHHTTSHHHHT
T ss_pred hhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHh-cCeEEecCHHHHHHHhccccCc
Confidence 3 3334 8999999763210 0 000000 000 00000112222232 7999999988877432
Q ss_pred ------------Ccc-ccccccCCCCcCcch-------------------hhhHHhhcCCCC--CccEEEEEeeccccCC
Q 008544 242 ------------SIV-CNVHGVNPKFLEIGE-------------------KKMEQQQNGNKA--FTKGAYYIGRMVWSKG 287 (562)
Q Consensus 242 ------------~~~-~~v~GVd~~~~~~~~-------------------~~~~~~~~~~~~--~~~~il~vGr~~~~Kg 287 (562)
..+ +..+|||.+.|.+.. +...+...++++ +.++++|+||+.++||
T Consensus 227 ~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg 306 (485)
T 2qzs_A 227 GMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKG 306 (485)
T ss_dssp TCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGC
T ss_pred chHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCccccC
Confidence 222 334699988776543 223344556654 6789999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCC--CHHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCCCCcHHHH
Q 008544 288 YEELLGLLNIYHKELAGLEMDLYGNGE--DFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDVVCTATA 363 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~~~l~ivG~g~--~~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E~~~~~~l 363 (562)
++.+++|+..+.+. +++|+|+|+|+ ..+.+++++++++.++.++.+..+. .++|+.||++|+||..|+||++++
T Consensus 307 ~~~li~a~~~l~~~--~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~~~l 384 (485)
T 2qzs_A 307 LDLVLEALPGLLEQ--GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQL 384 (485)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHH
T ss_pred HHHHHHHHHHHhhC--CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcHHHH
Confidence 99999999999763 89999999987 3688899998887667655554433 489999999999999999999999
Q ss_pred HHHHcCCcEEeeCCCC-ccccccC---------CceEeeC--CHHHHHHHHHHHH---hCCCC--CccHHHH-hcCCHHH
Q 008544 364 EALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQLSWES 425 (562)
Q Consensus 364 EAma~G~PVI~t~~~~-~e~v~~~---------~~g~~~~--d~~~la~~i~~ll---~~~~~--~l~~~ar-~~~sw~~ 425 (562)
||||||+|||+|+.++ .|++.++ .+|++++ |+++++++|.+++ +|++. +|+++++ +.|||+.
T Consensus 385 EAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~ 464 (485)
T 2qzs_A 385 YGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAMDFSWQV 464 (485)
T ss_dssp HHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCHHH
Confidence 9999999999999988 9999998 8999985 9999999999999 56654 7887777 8999999
Q ss_pred HHHHHHHHHHhcCcc
Q 008544 426 ATERFLQVAELVGDV 440 (562)
Q Consensus 426 ~~~~~~~~y~~~~~~ 440 (562)
+++++.++|+.....
T Consensus 465 ~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 465 AAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999987643
No 8
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=8.1e-35 Score=304.92 Aligned_cols=352 Identities=17% Similarity=0.205 Sum_probs=249.3
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCC
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
++|||+++++.++|..+|.+.....++++|.++| |+|+++++..... .++....... . ..
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~~----~~~~~~~~~~-~-------------~~- 78 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAG-HEVSVLAPASPHV----KLPDYVVSGG-K-------------AV- 78 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTT-CEEEEEESCCTTS----CCCTTEEECC-C-------------CC-
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCC-CeEEEEecCCccc----cCCcccccCC-c-------------EE-
Confidence 3489999998777777888899999999999998 9999998833111 0110000000 0 00
Q ss_pred CCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhc-CCEEEEEcCCcHHHHhhhhc
Q 008544 128 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKF-RFVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~-~~vi~~~h~~~~~~~~~~~~ 206 (562)
.++... ..............+.+++++.+||+||++.+....+ +..+.+.. .|+|.++|+.+....
T Consensus 79 ----~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~~~~----- 145 (406)
T 2gek_A 79 ----PIPYNG-SVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL---SMLALQAAEGPIVATFHTSTTKSL----- 145 (406)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH---HHHHHHHEESSEEEEECCCCCSHH-----
T ss_pred ----eccccC-CcccccccHHHHHHHHHHHHhcCCCEEEECCccchHH---HHHHHHhcCCCEEEEEcCcchhhh-----
Confidence 000000 0000000001124467778888999999998766532 22233333 389999998654321
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEEEcChhhhcc-----CCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEee
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEY-----PNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGR 281 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~-----~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr 281 (562)
....+.+.+. ...+ .+|.++++|+..++. +.+.+...+|+|...+.+... ....+.+.+.++|+|+
T Consensus 146 --~~~~~~~~~~-~~~~-~~d~ii~~s~~~~~~~~~~~~~~~~vi~~~v~~~~~~~~~~-----~~~~~~~~~~i~~~G~ 216 (406)
T 2gek_A 146 --TLSVFQGILR-PYHE-KIIGRIAVSDLARRWQMEALGSDAVEIPNGVDVASFADAPL-----LDGYPREGRTVLFLGR 216 (406)
T ss_dssp --HHHHHHSTTH-HHHT-TCSEEEESSHHHHHHHHHHHSSCEEECCCCBCHHHHHTCCC-----CTTCSCSSCEEEEESC
T ss_pred --hHHHHHHHHH-HHHh-hCCEEEECCHHHHHHHHHhcCCCcEEecCCCChhhcCCCch-----hhhccCCCeEEEEEee
Confidence 1112222222 2222 379999999888773 333343335777655443221 1222334679999999
Q ss_pred c-cccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccC-CCC
Q 008544 282 M-VWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPST-TDV 357 (562)
Q Consensus 282 ~-~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~-~E~ 357 (562)
+ .+.||++.+++++..+.++.|+++|+++|.|+. +.+++.++++..++.+++..++. .++|+.+|++|+||. .|+
T Consensus 217 ~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~ 295 (406)
T 2gek_A 217 YDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGES 295 (406)
T ss_dssp TTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCS
T ss_pred eCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCC
Confidence 9 999999999999999998889999999999988 88888887774457777776655 699999999999996 999
Q ss_pred CcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee--CCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHH
Q 008544 358 VCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY--DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATER 429 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~--~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~ 429 (562)
+|++++|||+||+|||+++.++ .|++.++.+|+++ +|+++++++|.+++++++. .|+++++ +.|+|+..+++
T Consensus 296 ~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 375 (406)
T 2gek_A 296 FGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQ 375 (406)
T ss_dssp SCHHHHHHHHHTCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHH
T ss_pred CchHHHHHHHcCCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999987 9999999999998 5999999999999998875 6777766 68999999999
Q ss_pred HHHHHHhcCcccc
Q 008544 430 FLQVAELVGDVVT 442 (562)
Q Consensus 430 ~~~~y~~~~~~~~ 442 (562)
+.++|+.......
T Consensus 376 ~~~~~~~~~~~~~ 388 (406)
T 2gek_A 376 IMRVYETVSGAGI 388 (406)
T ss_dssp HHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhcc
Confidence 9999998775444
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=5.5e-34 Score=306.55 Aligned_cols=376 Identities=14% Similarity=0.105 Sum_probs=245.5
Q ss_pred CeEEEEecccCCC--cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-----------------------CC
Q 008544 50 QHIAIFTTASLPW--LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-----------------------GN 104 (562)
Q Consensus 50 ~rI~ivt~~~~P~--~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-----------------------~~ 104 (562)
|||+++++.++|. .||++..+..++++|.++| |+|+|+++....... .++ ++
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G-~~V~vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHG-VRTRTLIPGYPAVKA--AVTDPVKCFEFTDLLGEKADLLEVQHER 77 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTT-CEEEEEEECCHHHHH--HCCSCEEEEEESCSSSCCEEEEEEEETT
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcC-CeEEEEecccccccc--cccccceeEEEEEecCCeEEEEEEEecC
Confidence 6999999988884 6888899999999999998 999999984321000 000 01
Q ss_pred ceeCCchhhHHHHHHHhhhcc-CCCCCcccccccccchhccchhhhHHhHHhhc-CcCCCcEEEecCCchhhhhhchHHH
Q 008544 105 ITFASPKEQEAYVRWWLEDRT-GFTSTFDTRFYPGKFAADKKSILAVGDITEII-PDEEADIAVLEEPEHLTWFHHGKRW 182 (562)
Q Consensus 105 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i-~~~~pDvV~~~~~~~~~~~~~~~~~ 182 (562)
+.+...... . +. .+. ..........++............+..+.+.+ ++.+|||||+|..... ++ +..+
T Consensus 78 v~v~~~~~~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~-~~--~~~~ 148 (485)
T 1rzu_A 78 LDLLILDAP-A----YY-ERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAA-MT--PVYM 148 (485)
T ss_dssp EEEEEEECH-H----HH-CSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHT-TH--HHHH
T ss_pred ceEEEEeCh-H----Hh-CCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchh-HH--HHHH
Confidence 111000000 0 00 000 00000000000000000000000122233333 6789999999974322 22 2223
Q ss_pred Hhh--cC-CEEEEEcCCcHHH------Hhhhhch--HHH----HHH-HHHHHHHHHHHhccEEEEcChhhhccCC-----
Q 008544 183 KAK--FR-FVVGIVHTNYLEY------VKREKND--RLQ----AFL-LEFVNSWLARVHCHKVIRLSAATQEYPN----- 241 (562)
Q Consensus 183 ~~~--~~-~vi~~~h~~~~~~------~~~~~~~--~~~----~~~-~~~~~~~~~~~~ad~vi~~S~~~~~~~~----- 241 (562)
.+. .+ |+|.++|+.+... ....+.. .+. ... ...+.+...+. +|.++++|+..++...
T Consensus 149 ~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ad~vi~~S~~~~~~~~~~~~g 227 (485)
T 1rzu_A 149 RYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQT-ATALSTVSPSYAEEILTAEFG 227 (485)
T ss_dssp HHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHHH-CSEEEESCHHHHHHTTSHHHH
T ss_pred hhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHhh-cCEEEecCHhHHHHHhccccC
Confidence 321 34 8999999763210 0000000 000 000 00112222233 7999999988877432
Q ss_pred -----------Ccc-ccccccCCCCcCcch-------------------hhhHHhhcCCCCC-ccEEEEEeeccccCCHH
Q 008544 242 -----------SIV-CNVHGVNPKFLEIGE-------------------KKMEQQQNGNKAF-TKGAYYIGRMVWSKGYE 289 (562)
Q Consensus 242 -----------~~~-~~v~GVd~~~~~~~~-------------------~~~~~~~~~~~~~-~~~il~vGr~~~~Kg~~ 289 (562)
..+ +..+|||.+.|.+.. +...+...+++++ .++++|+||+.++||++
T Consensus 228 ~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~vGrl~~~Kg~~ 307 (485)
T 1rzu_A 228 MGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGID 307 (485)
T ss_dssp TTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEESCBSTTTTHH
T ss_pred cchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCCCeEEEEEccCccccCHH
Confidence 222 233699988776543 2233445666654 67999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEEEccCCCCCcHHHHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFLNPSTTDVVCTATAEA 365 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v~pS~~E~~~~~~lEA 365 (562)
.+++|+..+.+. +++|+|+|+|+. .+.+++++++++.++.++.+..+. .++|+.||++|+||..|+||++++||
T Consensus 308 ~li~a~~~l~~~--~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEA 385 (485)
T 1rzu_A 308 LMAEAVDEIVSL--GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYA 385 (485)
T ss_dssp HHHTTHHHHHHT--TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHH
T ss_pred HHHHHHHHHHhc--CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhcCCEEEECcccCCCCHHHHHH
Confidence 999999999763 899999999974 688899998887667755554433 38999999999999999999999999
Q ss_pred HHcCCcEEeeCCCC-ccccccC---------CceEeeC--CHHHHHHHHHHHH---hCCCC--CccHHHH-hcCCHHHHH
Q 008544 366 LAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--GRNGFVEATLKAL---AEEPA--QPTDAQT-HQLSWESAT 427 (562)
Q Consensus 366 ma~G~PVI~t~~~~-~e~v~~~---------~~g~~~~--d~~~la~~i~~ll---~~~~~--~l~~~ar-~~~sw~~~~ 427 (562)
||||+|||+|+.++ .|++.++ .+|++++ |+++++++|.+++ +|++. +|+++++ +.|+|+.++
T Consensus 386 ma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~fs~~~~~ 465 (485)
T 1rzu_A 386 LRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDVSWEKSA 465 (485)
T ss_dssp HHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTCCCBHHHHH
T ss_pred HHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999998 9999998 8999985 9999999999999 66654 7888887 899999999
Q ss_pred HHHHHHHHhcCcc
Q 008544 428 ERFLQVAELVGDV 440 (562)
Q Consensus 428 ~~~~~~y~~~~~~ 440 (562)
+++.++|+.....
T Consensus 466 ~~~~~~y~~~~~~ 478 (485)
T 1rzu_A 466 GLYAALYSQLISK 478 (485)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHhhCC
Confidence 9999999987643
No 10
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=2.9e-33 Score=303.31 Aligned_cols=213 Identities=17% Similarity=0.191 Sum_probs=168.1
Q ss_pred hccEEEEcChhhhc-c---C------------CCccccccccCCCCcCcchhh--------------------hHHhhcC
Q 008544 225 HCHKVIRLSAATQE-Y---P------------NSIVCNVHGVNPKFLEIGEKK--------------------MEQQQNG 268 (562)
Q Consensus 225 ~ad~vi~~S~~~~~-~---~------------~~~~~~v~GVd~~~~~~~~~~--------------------~~~~~~~ 268 (562)
+||.|+++|+..++ + . .+...+.||||.+.|+|.... ......+
T Consensus 241 ~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~g 320 (536)
T 3vue_A 241 EADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAG 320 (536)
T ss_dssp HCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTT
T ss_pred hccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcC
Confidence 48999999987655 1 0 122344579999887764211 1122234
Q ss_pred C--CCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCCh--HHH
Q 008544 269 N--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHA--DPI 342 (562)
Q Consensus 269 ~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~--~~l 342 (562)
+ .++.++|+|+||+.++||++.+++|+.++.++ +.+|+++|.|+. ...++.....++.++.+.+..++. ..+
T Consensus 321 l~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 321 LPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp SCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 4 45678999999999999999999999999765 688999998875 356667777777778887665543 489
Q ss_pred HhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEe----------eC--CHHHHHHHHHHHHhC-
Q 008544 343 FHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRT----------YD--GRNGFVEATLKALAE- 408 (562)
Q Consensus 343 ~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~----------~~--d~~~la~~i~~ll~~- 408 (562)
|+.||+||+||.+|+||++++|||+||+|||+|+.|| .|+|.++.+|+. ++ |+++|+++|.++++.
T Consensus 399 ~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 399 MAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp HHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998 999999999983 43 789999999998863
Q ss_pred -CCC--CccHHHH-hcCCHHHHHHHHHHHHHhcCc
Q 008544 409 -EPA--QPTDAQT-HQLSWESATERFLQVAELVGD 439 (562)
Q Consensus 409 -~~~--~l~~~ar-~~~sw~~~~~~~~~~y~~~~~ 439 (562)
++. +|.+++. ++|||++++++|+++|+....
T Consensus 479 ~~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~L~~ 513 (536)
T 3vue_A 479 GTPAYEEMVRNCMNQDLSWKGPAKNWENVLLGLGV 513 (536)
T ss_dssp TSHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Confidence 222 5555554 789999999999999998653
No 11
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=6.3e-34 Score=294.80 Aligned_cols=345 Identities=13% Similarity=0.060 Sum_probs=241.2
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||++++..++| .+|++..+..++++|.++| |+|+++++.... ..++++.+.. ...
T Consensus 1 MkIl~i~~~~~~-~gG~~~~~~~l~~~L~~~G-~~V~v~~~~~~~-----~~~~~~~v~~---------------~~~-- 56 (374)
T 2iw1_A 1 MIVAFCLYKYFP-FGGLQRDFMRIASTVAARG-HHVRVYTQSWEG-----DCPKAFELIQ---------------VPV-- 56 (374)
T ss_dssp -CEEEECSEECT-TCHHHHHHHHHHHHHHHTT-CCEEEEESEECS-----CCCTTCEEEE---------------CCC--
T ss_pred CeEEEEEeecCC-CcchhhHHHHHHHHHHhCC-CeEEEEecCCCC-----CCCCCcEEEE---------------Ecc--
Confidence 689999998877 5888899999999999998 999999873210 0111111100 000
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhch
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKND 207 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~ 207 (562)
... . ...........+.+.+++.+||+||++......... +..+.. +.+.+.|..... . ..
T Consensus 57 -~~~---~----~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~--~~ 119 (374)
T 2iw1_A 57 -KSH---T----NHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVY----FAADVCYAEKVAQEKGFLYR---L--TS 119 (374)
T ss_dssp -CCS---S----HHHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSEE----ECCSCCHHHHHHHHCCHHHH---T--SH
T ss_pred -Ccc---c----chhhHHHHHHHHHHHHhccCCCEEEEecCCCCceee----eccccccceeeeecccchhh---h--cH
Confidence 000 0 000011113346777888899999998754321110 111101 112112211110 0 00
Q ss_pred HHHHHHHHHHHHHHHH-HhccEEEEcChhhhccC-------CCcc-ccccccCCCCcCcchh----hhHHhhcCCCCCcc
Q 008544 208 RLQAFLLEFVNSWLAR-VHCHKVIRLSAATQEYP-------NSIV-CNVHGVNPKFLEIGEK----KMEQQQNGNKAFTK 274 (562)
Q Consensus 208 ~~~~~~~~~~~~~~~~-~~ad~vi~~S~~~~~~~-------~~~~-~~v~GVd~~~~~~~~~----~~~~~~~~~~~~~~ 274 (562)
.......+.+...+ ..+|.++++|+..++.. ...+ +..+|+|.+.+.+... ...+...+++++.+
T Consensus 120 --~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (374)
T 2iw1_A 120 --RYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQN 197 (374)
T ss_dssp --HHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCE
T ss_pred --HHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCe
Confidence 01122222222222 14799999998877732 2223 3336898877654332 23355667777788
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHh-cCCcEEEEEeCCCCHHHHHHHHHhcCC--eeEEeCCCCChHHHHhhcCEEEE
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKE-LAGLEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~-~~~~~l~ivG~g~~~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
+++|+|++.+.||++.+++++..+.++ .++++|+++|.|+ .+.+++.++++++ ++.+++..++..++|+.+|++|+
T Consensus 198 ~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ 276 (374)
T 2iw1_A 198 LLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-PRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLH 276 (374)
T ss_dssp EEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEE
T ss_pred EEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-HHHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEe
Confidence 999999999999999999999998776 5789999999987 4778888888876 47778888889999999999999
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC---CHHHHHHHHHHHHhCCCC--CccHHHH---hcCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD---GRNGFVEATLKALAEEPA--QPTDAQT---HQLS 422 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~---d~~~la~~i~~ll~~~~~--~l~~~ar---~~~s 422 (562)
||..|+||++++||||||+|||+++.++ .|++.++.+|++++ |+++++++|.++++|++. .|+++++ ++++
T Consensus 277 ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (374)
T 2iw1_A 277 PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQD 356 (374)
T ss_dssp CCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCcccHHHHHHHCCCCEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987 99999999999885 999999999999998875 7887777 6789
Q ss_pred HHHHHHHHHHHHHhcC
Q 008544 423 WESATERFLQVAELVG 438 (562)
Q Consensus 423 w~~~~~~~~~~y~~~~ 438 (562)
|+...+++.++++...
T Consensus 357 ~~~~~~~~~~~l~~~l 372 (374)
T 2iw1_A 357 LYSLPEKAADIITGGL 372 (374)
T ss_dssp CSCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 12
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=2e-33 Score=295.57 Aligned_cols=335 Identities=13% Similarity=0.056 Sum_probs=237.4
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||+++++.+ |..||.+.....++++|.++ |+|++++.... . ...++....+ .. ...... + ..
T Consensus 1 MkI~~v~~~~-p~~gG~~~~~~~l~~~L~~~--~~V~v~~~~~~--g-~~~~~~~~~~---~~--~~~~~~---~-~~-- 63 (413)
T 3oy2_A 1 MKLIIVGAHS-SVPSGYGRVMRAIVPRISKA--HEVIVFGIHAF--G-RSVHANIEEF---DA--QTAEHV---R-GL-- 63 (413)
T ss_dssp CEEEEEEECT-TCCSHHHHHHHHHHHHHTTT--SEEEEEEESCC--S-CCSCSSSEEE---EH--HHHHHH---T-TC--
T ss_pred CeEEEecCCC-CCCCCHHHHHHHHHHHHHhc--CCeEEEeecCC--C-cccccccccC---Cc--cccccc---c-cc--
Confidence 7999999865 77789899999999999997 99999987321 1 1111110000 00 100000 0 00
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHH--hhcC---CEEEEEcCCcHHHHhhh
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWK--AKFR---FVVGIVHTNYLEYVKRE 204 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~--~~~~---~vi~~~h~~~~~~~~~~ 204 (562)
... .+.+..+.+.+++.+||+||++.+... + +..+. .+.. +.+...|.........
T Consensus 64 -~~~-------------~~~~~~l~~~l~~~~~Div~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 124 (413)
T 3oy2_A 64 -NEQ-------------GFYYSGLSEFIDVHKPDIVMIYNDPIV--I--GNYLLAMGKCSHRTKIVLYVDLVSKNIREN- 124 (413)
T ss_dssp -CST-------------TCCHHHHHHHHHHHCCSEEEEEECHHH--H--HHHHHHGGGCCSCCEEEEEECCCSBSCCGG-
T ss_pred -ccc-------------cchHHHHHHHHHhcCCCEEEEcchHHH--H--HHHHHHhccCCCCCceeeeccccchhhHHH-
Confidence 000 011223566777889999999955433 2 11122 1211 3455566433221100
Q ss_pred hchHHHHHHHHHHHHHHHHHhcc--EEEEcChhhhccC-----CCc-cccccccCCCCcCcchhhhHHhhcCCCC--Ccc
Q 008544 205 KNDRLQAFLLEFVNSWLARVHCH--KVIRLSAATQEYP-----NSI-VCNVHGVNPKFLEIGEKKMEQQQNGNKA--FTK 274 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~~-----~~~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~--~~~ 274 (562)
+...+.+ +| .++++|+..++.. ... .+..+|+|.+.+. ..+...+.++ +.+
T Consensus 125 ------------~~~~~~~--~~~~~ii~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~~-----~~~~~~~~~~~~~~~ 185 (413)
T 3oy2_A 125 ------------LWWIFSH--PKVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIY-----DARKLVGLSEYNDDV 185 (413)
T ss_dssp ------------GGGGGGC--TTEEEEEESSTHHHHHHHHTTCCSCEEECCCCCCCCCCT-----THHHHTTCGGGTTSE
T ss_pred ------------HHHHHhc--cCCceEEEcCHHHHHHHHHcCCCCceEEeCCCCCHHHHH-----HHHHhcCCCcccCce
Confidence 1122222 56 9999998887621 222 3334699887762 2234455555 688
Q ss_pred EEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCH------HHHHHHHHhcCCee--------EEeCC-CC--
Q 008544 275 GAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDF------DQIQRAAKKLKLVV--------RVYPG-RD-- 337 (562)
Q Consensus 275 ~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~------~~l~~~~~~l~l~~--------~~~~~-~~-- 337 (562)
.++|+|++.+.||++.+++|+..+.++.|+++|+|+|+|+.. +.++++++++++.. .++.+ .+
T Consensus 186 ~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~ 265 (413)
T 3oy2_A 186 LFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDE 265 (413)
T ss_dssp EEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHH
T ss_pred EEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHH
Confidence 999999999999999999999999999999999999998765 88899999998874 33455 33
Q ss_pred ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCc---------------eE--ee--CCHHH
Q 008544 338 HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPN---------------CR--TY--DGRNG 397 (562)
Q Consensus 338 ~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~---------------g~--~~--~d~~~ 397 (562)
++.++|+.||++|+||..|+||++++||||||+|||+|+.++ .|++.++.+ |+ ++ +|+++
T Consensus 266 ~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~ 345 (413)
T 3oy2_A 266 RVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDD 345 (413)
T ss_dssp HHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHH
T ss_pred HHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHH
Confidence 456999999999999999999999999999999999999998 999988887 77 76 49999
Q ss_pred HHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHHhcCcc
Q 008544 398 FVEATLKALAEEPA--QPTDAQT----HQLSWESATERFLQVAELVGDV 440 (562)
Q Consensus 398 la~~i~~ll~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~~~~~ 440 (562)
++++| ++++|++. +|+++++ ++|+|+.+++++.++|+.....
T Consensus 346 la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 346 LVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSLLRV 393 (413)
T ss_dssp HHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTC-
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 99999 99998876 7777776 6899999999999999988744
No 13
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=1.1e-32 Score=308.45 Aligned_cols=275 Identities=9% Similarity=0.065 Sum_probs=201.4
Q ss_pred CCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhc--hHHHHHHH--HHH--HHHHHHHhccEEEEc
Q 008544 160 EEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN--DRLQAFLL--EFV--NSWLARVHCHKVIRL 232 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~--~~~~~~~~--~~~--~~~~~~~~ad~vi~~ 232 (562)
.+|||||+|..... +. +..+++.++ |+|.++|+........... ..+...+. ..+ .....+ .||.||++
T Consensus 406 ~~PDVIHsH~~~sg-lv--a~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~-~AD~VIa~ 481 (816)
T 3s28_A 406 GKPDLIIGNYSDGN-LV--ASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMN-HTDFIITS 481 (816)
T ss_dssp SCCSEEEEEHHHHH-HH--HHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHH-HSSEEEES
T ss_pred CCCeEEEeCCchHH-HH--HHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHH-hCCEEEEC
Confidence 47999999864332 33 344555555 9999999764332111110 01111100 011 122233 38999999
Q ss_pred Chhhhcc--------CC---------------------CccccccccCCCCcCcchhhhH-------------------H
Q 008544 233 SAATQEY--------PN---------------------SIVCNVHGVNPKFLEIGEKKME-------------------Q 264 (562)
Q Consensus 233 S~~~~~~--------~~---------------------~~~~~v~GVd~~~~~~~~~~~~-------------------~ 264 (562)
|+..++. .. +..+..+|||.+.|.+...... +
T Consensus 482 S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r 561 (816)
T 3s28_A 482 TFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENK 561 (816)
T ss_dssp CHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBT
T ss_pred CHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHH
Confidence 9877651 11 2233346999988766442211 1
Q ss_pred hhcCC--CCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC-----------CHHHHHHHHHhcCCe--
Q 008544 265 QQNGN--KAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE-----------DFDQIQRAAKKLKLV-- 329 (562)
Q Consensus 265 ~~~~~--~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~-----------~~~~l~~~~~~l~l~-- 329 (562)
...+. +++.++|+|+||+.+.||++.+++|+.++.+..++++|+|+|+|+ ..+.+++.++++++.
T Consensus 562 ~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~ 641 (816)
T 3s28_A 562 EHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQ 641 (816)
T ss_dssp TEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBB
T ss_pred HHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCc
Confidence 12333 556889999999999999999999999998888899999999998 457888999999885
Q ss_pred eEEeCCCCC------hHHHHh-hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEeeC--CHHHHH
Q 008544 330 VRVYPGRDH------ADPIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--GRNGFV 399 (562)
Q Consensus 330 ~~~~~~~~~------~~~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la 399 (562)
+.+.|...+ ...+|. .+|+||+||..|+||++++||||||+|||+|+.|+ .|++.++.+|++++ |+++++
T Consensus 642 V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 642 FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHH
T ss_pred EEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHH
Confidence 445564443 335566 57999999999999999999999999999999998 99999999999985 999999
Q ss_pred HHHHHHH----hCCCC--CccHHHH----hcCCHHHHHHHHHHHHHhcC
Q 008544 400 EATLKAL----AEEPA--QPTDAQT----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 400 ~~i~~ll----~~~~~--~l~~~ar----~~~sw~~~~~~~~~~y~~~~ 438 (562)
++|.+++ .|+.. +|+++++ ++|||+.++++++++|+...
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 9997776 77775 7888777 78999999999999998664
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=7.8e-33 Score=283.76 Aligned_cols=298 Identities=13% Similarity=-0.024 Sum_probs=230.5
Q ss_pred CCeEEEEecc-----------cCCC-cccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHH
Q 008544 49 QQHIAIFTTA-----------SLPW-LTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAY 116 (562)
Q Consensus 49 ~~rI~ivt~~-----------~~P~-~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~ 116 (562)
+|||+++++. ++|. .+|.+.....++++|.++| |+|+++++..... ..+.
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G-~~v~v~~~~~~~~-----~~~~------------ 64 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELG-HEVFLLGAPGSPA-----GRPG------------ 64 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTT-CEEEEESCTTSCC-----CSTT------------
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcC-CeEEEEecCCCCC-----CCCc------------
Confidence 4899999998 4554 5788888999999999998 9999998732100 0000
Q ss_pred HHHHhhhccCCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcC
Q 008544 117 VRWWLEDRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHT 195 (562)
Q Consensus 117 ~~~~~~~~~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~ 195 (562)
.+... . +. ...+.+++++.+||+||++.+... ++ ..+..+ | |.++|+
T Consensus 65 ------~~~~~-----~---~~-----------~~~l~~~l~~~~~Dvi~~~~~~~~-~~-----~~~~~~~p-v~~~h~ 112 (342)
T 2iuy_A 65 ------LTVVP-----A---GE-----------PEEIERWLRTADVDVVHDHSGGVI-GP-----AGLPPGTA-FISSHH 112 (342)
T ss_dssp ------EEECS-----C---CS-----------HHHHHHHHHHCCCSEEEECSSSSS-CS-----TTCCTTCE-EEEEEC
T ss_pred ------ceecc-----C---Cc-----------HHHHHHHHHhcCCCEEEECCchhh-HH-----HHhhcCCC-EEEecC
Confidence 00000 0 00 114677788889999999987654 12 122223 7 999997
Q ss_pred CcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCC--c-cccccccCCCCcCcchhhhHHhhcCCCCC
Q 008544 196 NYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNS--I-VCNVHGVNPKFLEIGEKKMEQQQNGNKAF 272 (562)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~--~-~~~v~GVd~~~~~~~~~~~~~~~~~~~~~ 272 (562)
.+.... .+|.++++|+..++...+ . .+..+|+|.+.+.+... . ..+
T Consensus 113 ~~~~~~-----------------------~~d~ii~~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-------~-~~~ 161 (342)
T 2iuy_A 113 FTTRPV-----------------------NPVGCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAAD-------Q-VAK 161 (342)
T ss_dssp SSSBCS-----------------------CCTTEEESCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTT-------C-CCC
T ss_pred CCCCcc-----------------------cceEEEEcCHHHHHHHhcCCceEEEcCCCChhhcCcccc-------c-CCC
Confidence 754311 069999999999885442 2 23336888776654322 1 123
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCCh--HHHHhhcCEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHA--DPIFHDYKVFL 350 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~--~~l~~~adv~v 350 (562)
.+.++|+|++.+.||++.+++++..+ +++|+++|+|++.+.+++++++++.++.+.+..++. .++|+.+|++|
T Consensus 162 ~~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v 236 (342)
T 2iuy_A 162 EDFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVL 236 (342)
T ss_dssp CSCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEE
T ss_pred CCEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEE
Confidence 56899999999999999999999876 799999999999999999998888667777777666 69999999999
Q ss_pred EccC----------CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHHHHHHHHHHHHhCCCCCccHH
Q 008544 351 NPST----------TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNGFVEATLKALAEEPAQPTDA 416 (562)
Q Consensus 351 ~pS~----------~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~~la~~i~~ll~~~~~~l~~~ 416 (562)
+||. .|+||++++||||||+|||+++.++ .|++.+ +.+|++++ |+++++++|.++++ +++
T Consensus 237 ~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~------~~~ 310 (342)
T 2iuy_A 237 AMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA------SDE 310 (342)
T ss_dssp ECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC------HHH
T ss_pred ECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH------HHH
Confidence 9999 8999999999999999999999998 999999 89999988 99999999999887 444
Q ss_pred HH----hcCCHHHHHHHHHHHHHhcC
Q 008544 417 QT----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 417 ar----~~~sw~~~~~~~~~~y~~~~ 438 (562)
++ ++|+|+.+++++.++|+...
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 311 VRRAAVRLWGHVTIAERYVEQYRRLL 336 (342)
T ss_dssp HHHHHHHHHBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 43 78999999999999999776
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=2e-29 Score=265.17 Aligned_cols=333 Identities=8% Similarity=0.025 Sum_probs=203.9
Q ss_pred ccCCeEEEEecccCCCc-ccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhcc
Q 008544 47 RKQQHIAIFTTASLPWL-TGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~~-~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
.++|||+++++.|.|.. .|+...+..++++|+++| |+|+|+++... + .. +. .........
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~G-heV~Vvt~~~~--------~--------~~-~~-~~~~~~~~~ 104 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKK-FKKRIILTDAT--------P--------NP-KD-LQSFKSFKY 104 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTT-CEEEEEESSCC--------C--------CH-HH-HGGGTTSEE
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcC-CceEEEEecCC--------C--------Ch-HH-HHhhhccce
Confidence 45699999999999863 344556889999999998 99999998321 1 00 00 000000000
Q ss_pred CCCCCcccccccccchhccchhhhHH-hHHhhcCcCCCcEEEecCCchhhhhhchHHHH----h----hcCCEEEEEcCC
Q 008544 126 GFTSTFDTRFYPGKFAADKKSILAVG-DITEIIPDEEADIAVLEEPEHLTWFHHGKRWK----A----KFRFVVGIVHTN 196 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~~~~~~~~~~~~-~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~----~----~~~~vi~~~h~~ 196 (562)
...... ..+..+. ..+. .+...+...++|+||++...... . +..+. . ...+.+..+|+.
T Consensus 105 ~~~~~~--~~~~~~i-------~~~~~~~~~~~~~~~~Dvv~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~ 172 (413)
T 2x0d_A 105 VMPEED--KDFALQI-------VPFNDRYNRTIPVAKHDIFIATAWWTAY-A--AQRIVSWQSDTYGIPPNKILYIIQDF 172 (413)
T ss_dssp CCTTCC--CCCSEEE-------EECSCCTTCCEEECTTEEEEECSHHHHH-H--HHHHHHHHHHHHTCCCCCEEEEECSC
T ss_pred eeccCC--cccccee-------eeccccccccccCCCCCEEEEehHHHHH-H--HHHhhhhhhhhcccccCcEEEEEeec
Confidence 000000 0000000 0000 01122223579999988643321 1 11111 0 113677788865
Q ss_pred cHHHHhhhhchHHHHHHHHHHHHHHHHHhcc--EEEEcChhhhccCCC------cc-ccccccCCCCcCcchhhhHHhhc
Q 008544 197 YLEYVKREKNDRLQAFLLEFVNSWLARVHCH--KVIRLSAATQEYPNS------IV-CNVHGVNPKFLEIGEKKMEQQQN 267 (562)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~~S~~~~~~~~~------~~-~~v~GVd~~~~~~~~~~~~~~~~ 267 (562)
.+.+. ..+. ...+.+...+. ++ .+|++|+..++...+ .. ...+|+|.+.+.+. ..
T Consensus 173 ~~~~~---~~~~-----~~~~~~~~~~~-~~~~~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~-------~~ 236 (413)
T 2x0d_A 173 EPGFY---QWSS-----QYVLAESTYKY-RGPQIAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYI-------ND 236 (413)
T ss_dssp GGGGS---CSSH-----HHHHHHHTTSC-CSCEEEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTT-------TS
T ss_pred hhhcC---ccCh-----HHHHHHHHhcc-CCceEEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccc-------cc
Confidence 43321 1111 01112222222 33 689999888874321 11 12245554433221 11
Q ss_pred CCCCCccEEEEEeec-cccCCHHHHHHHHHHHHHhcCC---cEEEEEeCCCCHHHHHHHHHhcCC--eeEEeCCC--CCh
Q 008544 268 GNKAFTKGAYYIGRM-VWSKGYEELLGLLNIYHKELAG---LEMDLYGNGEDFDQIQRAAKKLKL--VVRVYPGR--DHA 339 (562)
Q Consensus 268 ~~~~~~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~---~~l~ivG~g~~~~~l~~~~~~l~l--~~~~~~~~--~~~ 339 (562)
..++.+.++++||+ .++||++.+++|+..+.++.|+ ++|+++|+|+.. .++++ ++++.|.. +++
T Consensus 237 -~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-------~~l~~~~~v~f~G~~~~~~l 308 (413)
T 2x0d_A 237 -KRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-------IALGKGIHLNSLGKLTLEDY 308 (413)
T ss_dssp -CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-------EEEETTEEEEEEESCCHHHH
T ss_pred -ccCCCCEEEEEecCchhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-------hhcCCcCcEEEcCCCCHHHH
Confidence 22335678899996 6899999999999999888775 899999998764 23343 35555554 455
Q ss_pred HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeC--CHHHHHHHHHHHHhCCCCCccHHH
Q 008544 340 DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEEPAQPTDAQ 417 (562)
Q Consensus 340 ~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~~l~~~a 417 (562)
.++|+.||+||+||..|+||++++||||||+|||+++.|..|++.++.+|++++ |+++++++|.++++|++.... ++
T Consensus 309 ~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~ 387 (413)
T 2x0d_A 309 ADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DK 387 (413)
T ss_dssp HHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hH
Confidence 599999999999999999999999999999999997655589999999999874 999999999999999886333 44
Q ss_pred H---hcCCHHHHHHHHHHHHHh
Q 008544 418 T---HQLSWESATERFLQVAEL 436 (562)
Q Consensus 418 r---~~~sw~~~~~~~~~~y~~ 436 (562)
+ +.|+|+.+.++ .+.|+.
T Consensus 388 ~~~~~~~~W~~~~~~-~~~~~~ 408 (413)
T 2x0d_A 388 KESSNMMFYINEFNE-FSFIKE 408 (413)
T ss_dssp -CCBSCGGGCCCC----TTHHH
T ss_pred HHHHHhCCHHHHHHH-HHHHHH
Confidence 4 78999999877 455543
No 16
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.95 E-value=4.4e-27 Score=242.80 Aligned_cols=330 Identities=13% Similarity=0.053 Sum_probs=215.3
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccC-CCceeCCchhhHHHHHHHhhhccCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYP-GNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
+|||++++.. .+|.......++++|.++| |+|+++++.... .....+ .++.+.. ...
T Consensus 6 ~mkIl~~~~~----~gG~~~~~~~la~~L~~~G-~~V~v~~~~~~~--~~~~~~~~g~~~~~---------------~~~ 63 (364)
T 1f0k_A 6 GKRLMVMAGG----TGGHVFPGLAVAHHLMAQG-WQVRWLGTADRM--EADLVPKHGIEIDF---------------IRI 63 (364)
T ss_dssp -CEEEEECCS----SHHHHHHHHHHHHHHHTTT-CEEEEEECTTST--HHHHGGGGTCEEEE---------------CCC
T ss_pred CcEEEEEeCC----CccchhHHHHHHHHHHHcC-CEEEEEecCCcc--hhhhccccCCceEE---------------ecC
Confidence 3899999732 3565666778999999998 999999873210 000000 0111000 000
Q ss_pred CCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhc
Q 008544 128 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~ 206 (562)
..+........+............+.+.+++.+||+||++.+... +. +...++..+ |++.+.|+.+...
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~-~~--~~~~~~~~~~p~v~~~~~~~~~~------ 133 (364)
T 1f0k_A 64 -SGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVS-GP--GGLAAWSLGIPVVLHEQNGIAGL------ 133 (364)
T ss_dssp -CCCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTH-HH--HHHHHHHTTCCEEEEECSSSCCH------
T ss_pred -CccCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCc-hH--HHHHHHHcCCCEEEEecCCCCcH------
Confidence 000000000000000111112445777788889999999976533 11 222333334 8888888654221
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEE-EEEeecccc
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGA-YYIGRMVWS 285 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~i-l~vGr~~~~ 285 (562)
..+++.+. +|.+++.++.. ++ +.....+|++..++.+.. .+...+.+++.+.+ ++.|++.+.
T Consensus 134 ----------~~~~~~~~-~d~v~~~~~~~--~~-~~~~i~n~v~~~~~~~~~---~~~~~~~~~~~~~il~~~g~~~~~ 196 (364)
T 1f0k_A 134 ----------TNKWLAKI-ATKVMQAFPGA--FP-NAEVVGNPVRTDVLALPL---PQQRLAGREGPVRVLVVGGSQGAR 196 (364)
T ss_dssp ----------HHHHHTTT-CSEEEESSTTS--SS-SCEECCCCCCHHHHTSCC---HHHHHTTCCSSEEEEEECTTTCCH
T ss_pred ----------HHHHHHHh-CCEEEecChhh--cC-CceEeCCccchhhcccch---hhhhcccCCCCcEEEEEcCchHhH
Confidence 12233443 89999988664 33 222333577766554321 12234444445544 455689999
Q ss_pred CCHHHHHHHHHHHHHhcCCcE-EEEEeCCCCHHHHHHHHHhcCC-eeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHH
Q 008544 286 KGYEELLGLLNIYHKELAGLE-MDLYGNGEDFDQIQRAAKKLKL-VVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATA 363 (562)
Q Consensus 286 Kg~~~ll~a~~~l~~~~~~~~-l~ivG~g~~~~~l~~~~~~l~l-~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~l 363 (562)
||.+.+++++..+.+ +++ ++++|+|+ .+++++.++++++ ++.+.+..++..++|+.||++|+||. |++++
T Consensus 197 k~~~~li~a~~~l~~---~~~~l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~ 268 (364)
T 1f0k_A 197 ILNQTMPQVAAKLGD---SVTIWHQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVS 268 (364)
T ss_dssp HHHHHHHHHHHHHGG---GEEEEEECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHH
T ss_pred HHHHHHHHHHHHhcC---CcEEEEEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHH
Confidence 999999999998864 678 56788877 5788888888875 57777778888999999999999983 99999
Q ss_pred HHHHcCCcEEeeCCCC-c--------cccccCCceEeeC--C--HHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHH
Q 008544 364 EALAMGKIVVCANHPS-N--------DFFKQFPNCRTYD--G--RNGFVEATLKALAEEPA--QPTDAQT---HQLSWES 425 (562)
Q Consensus 364 EAma~G~PVI~t~~~~-~--------e~v~~~~~g~~~~--d--~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~ 425 (562)
|||+||+|||+++.++ . +++.++ .|++++ | +++++++|.++ |++. +|+++++ +.|+|+.
T Consensus 269 EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~ 345 (364)
T 1f0k_A 269 EIAAAGLPALFVPFQHKDRQQYWNALPLEKAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATER 345 (364)
T ss_dssp HHHHHTCCEEECCCCCTTCHHHHHHHHHHHTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHhCCCEEEeeCCCCchhHHHHHHHHHhCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHH
Confidence 9999999999999986 3 344444 598874 5 89999999998 5554 7887777 7899999
Q ss_pred HHHHHHHHHHhcC
Q 008544 426 ATERFLQVAELVG 438 (562)
Q Consensus 426 ~~~~~~~~y~~~~ 438 (562)
+++++++.|+...
T Consensus 346 ~~~~~~~~y~~~~ 358 (364)
T 1f0k_A 346 VANEVSRVARALE 358 (364)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 17
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.94 E-value=4.8e-27 Score=257.49 Aligned_cols=325 Identities=11% Similarity=0.010 Sum_probs=222.9
Q ss_pred ccCCeEEEEecccCCCcccccccHHHHHHH--HHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhc
Q 008544 47 RKQQHIAIFTTASLPWLTGTAVNPLFRAAY--LAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDR 124 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~~~G~a~~~~~la~~--L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~ 124 (562)
.+++||+++++.+.+ +|++..+..+++. |.+.| |+|+++++... .. . .. ...++..
T Consensus 203 ~~~~rI~~~~~~~~~--~g~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~---------~~----~-~~-~~~~~~~---- 260 (568)
T 2vsy_A 203 KGPLRVGFVSNGFGA--HPTGLLTVALFEALQRRQPD-LQMHLFATSGD---------DG----S-TL-RTRLAQA---- 260 (568)
T ss_dssp SSCEEEEEEESCSSS--SHHHHHHHHHHHHHHHHCTT-EEEEEEESSCC---------CS----C-HH-HHHHHHT----
T ss_pred CCCeEEEEECccccc--ChHHHHHHHHHhhccCCccc-EEEEEEECCCC---------Cc----c-HH-HHHHHhc----
Confidence 345899999988754 5667778888999 66676 99999986210 00 0 11 0111111
Q ss_pred cCCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhh
Q 008544 125 TGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKRE 204 (562)
Q Consensus 125 ~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~ 204 (562)
..+ ..+ .. .....+.+.+++.+|||||.+........ ...+..+..|++.++|..... .
T Consensus 261 ~~~---~~~---~~---------~~~~~l~~~i~~~~~Div~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~--- 319 (568)
T 2vsy_A 261 STL---HDV---TA---------LGHLATAKHIRHHGIDLLFDLRGWGGGGR--PEVFALRPAPVQVNWLAYPGT-S--- 319 (568)
T ss_dssp SEE---EEC---TT---------CCHHHHHHHHHHTTCSEEEECSSCTTCSS--CHHHHTCCSSEEEEESSSSSC-C---
T ss_pred CeE---EEC---CC---------CCHHHHHHHHHhCCCCEEEECCCCCCcch--HHHHhcCCCceeEeeecCCcc-c---
Confidence 000 000 00 11345778888899999998654332111 122444445887777743110 0
Q ss_pred hchHHHHHHHHHHHHHHHHHhccEEEEcChhhhccCCCccccc-cccCCCCcC-cchhhhHHhhcCCCCCccEEEEEeec
Q 008544 205 KNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYPNSIVCNV-HGVNPKFLE-IGEKKMEQQQNGNKAFTKGAYYIGRM 282 (562)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~v-~GVd~~~~~-~~~~~~~~~~~~~~~~~~~il~vGr~ 282 (562)
.. ..+....+|.++++|+..+++.. .+..+ +.+.+.... .......+...+++++ .+++++|++
T Consensus 320 ~~------------~~~~~~~~d~~i~~s~~~~~~~~-~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~-~~v~~~g~~ 385 (568)
T 2vsy_A 320 GA------------PWMDYVLGDAFALPPALEPFYSE-HVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQ-GVVLCCFNN 385 (568)
T ss_dssp CC------------TTCCEEEECTTTSCTTTGGGCSS-EEEECSSCSCCCCTTCCCCCCCCTGGGTCCTT-SCEEEECCC
T ss_pred CC------------CCceEEEECCCcCCcccccCCcc-eeEcCCCcCCCCCCCCCCCCCCCccccCCCCC-CEEEEeCCc
Confidence 00 00111137888999988877653 33222 222221110 0011122344556553 456799999
Q ss_pred cccCCHHHHHHHHHHHHHhcCCcEEEEEe-CCCCHHHHHHHHHhcCCe---eEEeCCCC--ChHHHHhhcCEEEEccCCC
Q 008544 283 VWSKGYEELLGLLNIYHKELAGLEMDLYG-NGEDFDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 283 ~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~~~~l~~~~~~l~l~---~~~~~~~~--~~~~l~~~adv~v~pS~~E 356 (562)
.+ ||++.+++++.++.++.|+++|+|+| +|+..+.+++.++++++. +.|.|..+ +..++|+.+|+||+||.+
T Consensus 386 ~~-K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~- 463 (568)
T 2vsy_A 386 SY-KLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY- 463 (568)
T ss_dssp GG-GCCHHHHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-
T ss_pred cc-cCCHHHHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-
Confidence 99 99999999999998889999999999 888889999999999875 55666664 566999999999999999
Q ss_pred CCcHHHHHHHHcCCcEEe-------eCCC-------C-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH-
Q 008544 357 VVCTATAEALAMGKIVVC-------ANHP-------S-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT- 418 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~-------t~~~-------~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar- 418 (562)
++|++++|||+||+|||+ |+.+ + .|++.+ |+++++++|.++++|++. .|+++++
T Consensus 464 ~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~ 535 (568)
T 2vsy_A 464 NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVA--------DDAAFVAKAVALASDPAALTALHARVDV 535 (568)
T ss_dssp CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCS--------SHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999 9888 6 666643 999999999999999875 7777665
Q ss_pred -----hcCCHHHHHHHHHHHHHhcC
Q 008544 419 -----HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 419 -----~~~sw~~~~~~~~~~y~~~~ 438 (562)
+.|+|+.+++++.++|+...
T Consensus 536 ~~~~~~~f~~~~~~~~~~~~y~~~~ 560 (568)
T 2vsy_A 536 LRRASGVFHMDGFADDFGALLQALA 560 (568)
T ss_dssp HHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46999999999999998765
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.94 E-value=1.2e-26 Score=243.78 Aligned_cols=241 Identities=17% Similarity=0.176 Sum_probs=169.5
Q ss_pred CCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcH-HHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhhc
Q 008544 161 EADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYL-EYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQE 238 (562)
Q Consensus 161 ~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~ 238 (562)
++|+||....... .+ ..+++..+ |++.++|+... .... .. ...+.+.+...+. +|.++++|+..++
T Consensus 124 ~~DvIh~~~~~~~-~~---~~~~~~~~~p~v~~~h~~~~~~~~~---~~----~~~~~~~~~~~~~-ad~vi~~S~~~~~ 191 (406)
T 2hy7_A 124 ESDVIVFESGIAV-AF---IELAKRVNPAAKLVYRASDGLSTIN---VA----SYIEREFDRVAPT-LDVIALVSPAMAA 191 (406)
T ss_dssp HCSEEEEESSGGG-GG---HHHHHHHCTTSEEEEEESSCHHHHT---CC----HHHHHHHHHHGGG-CSEEEESCGGGGG
T ss_pred CCCEEEECCchHH-HH---HHHHHHhCCCEEEEEeccchhhccc---cc----HHHHHHHHHHHHh-CCEEEEcCHHHHH
Confidence 5899994332211 11 12334434 88888996532 1111 11 1122222333333 7999999999988
Q ss_pred cCCC--cc-ccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 008544 239 YPNS--IV-CNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED 315 (562)
Q Consensus 239 ~~~~--~~-~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~ 315 (562)
...+ .+ +..||+|.+.|.+.... ..+..++++|+|++.+.||+ +..+.+..|+++|+|+|+|+
T Consensus 192 ~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~~~~~l~ivG~g~- 257 (406)
T 2hy7_A 192 EVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF------FVVASKAFPQVTFHVIGSGM- 257 (406)
T ss_dssp GCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH------HHHHHHHCTTEEEEEESCSS-
T ss_pred HHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH------HHHHHHhCCCeEEEEEeCch-
Confidence 5543 22 33368887766432111 11223789999999999999 44445567899999999987
Q ss_pred HHHHHHHHHhcCC--eeEEeCCCC--ChHHHHhhcCEEEEccCCCCCcHHHHHHH-------HcCCcEEeeCCCCccccc
Q 008544 316 FDQIQRAAKKLKL--VVRVYPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEAL-------AMGKIVVCANHPSNDFFK 384 (562)
Q Consensus 316 ~~~l~~~~~~l~l--~~~~~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAm-------a~G~PVI~t~~~~~e~v~ 384 (562)
++++++ ++.+.|..+ ++.++|+.||++|+||..|+||++++||| |||+|||+|+. +.
T Consensus 258 -------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~-----v~ 325 (406)
T 2hy7_A 258 -------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA-----VV 325 (406)
T ss_dssp -------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----GT
T ss_pred -------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----cc
Confidence 344444 366666654 45599999999999999999999999999 99999999988 67
Q ss_pred cCCceEe-e--CCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHH--HHhcCccccc
Q 008544 385 QFPNCRT-Y--DGRNGFVEATLKALAEEPAQPTDAQTHQLSWESATERFLQV--AELVGDVVTK 443 (562)
Q Consensus 385 ~~~~g~~-~--~d~~~la~~i~~ll~~~~~~l~~~ar~~~sw~~~~~~~~~~--y~~~~~~~~~ 443 (562)
++.+|++ + +|+++|+++|.++++|+.. ...++|+|+.++++++++ |+.....+..
T Consensus 326 ~~~~G~l~v~~~d~~~la~ai~~ll~~~~~----~~~~~~sw~~~a~~~~~~~~y~~~~~~~~~ 385 (406)
T 2hy7_A 326 GPYKSRFGYTPGNADSVIAAITQALEAPRV----RYRQCLNWSDTTDRVLDPRAYPETRLYPHP 385 (406)
T ss_dssp CSCSSEEEECTTCHHHHHHHHHHHHHCCCC----CCSCCCBHHHHHHHHHCGGGSGGGBSSCCC
T ss_pred cCcceEEEeCCCCHHHHHHHHHHHHhCcch----hhhhcCCHHHHHHHHHHhhcccccCcCCCC
Confidence 7788888 6 4999999999999999872 123789999999999999 9887755443
No 19
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.93 E-value=2.1e-25 Score=230.97 Aligned_cols=266 Identities=9% Similarity=0.006 Sum_probs=174.9
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+++++.+||+||+|++....+. +...++..+ |++.+.|... .+... ..+.. ......+.+ .+|.
T Consensus 84 ~~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~~~~~~ip~v~~~~~~~-~~~~~---~~~~~---~~~~~~~~~-~~d~ 153 (375)
T 3beo_A 84 LEGLDKVMKEAKPDIVLVHGDTTTTFI--ASLAAFYNQIPVGHVEAGLR-TWDKY---SPYPE---EMNRQLTGV-MADL 153 (375)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHHTTCCEEEESCCCC-CSCTT---SSTTH---HHHHHHHHH-HCSE
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEecccc-ccccc---CCChh---HhhhhHHhh-hhhe
Confidence 345777888899999999876444333 223344444 7876666431 11100 00000 111222333 3899
Q ss_pred EEEcChhhhccC------CCccccc-cc-cCCCCcCcch--hhhHHhhcCCCCCccEEEEEeecccc-CCHHHHHHHHHH
Q 008544 229 VIRLSAATQEYP------NSIVCNV-HG-VNPKFLEIGE--KKMEQQQNGNKAFTKGAYYIGRMVWS-KGYEELLGLLNI 297 (562)
Q Consensus 229 vi~~S~~~~~~~------~~~~~~v-~G-Vd~~~~~~~~--~~~~~~~~~~~~~~~~il~vGr~~~~-Kg~~~ll~a~~~ 297 (562)
++++|+..++.. .+.+..+ +| +|...+.+.. ....+... +++..+++++|++.+. ||++.+++|+.+
T Consensus 154 ii~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a~~~ 231 (375)
T 3beo_A 154 HFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRAIKR 231 (375)
T ss_dssp EEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHHHHH
Confidence 999998887732 2222222 45 5543332211 11112111 2334567799999875 999999999999
Q ss_pred HHHhcCCcEEEEEeCCCCHHHHHHHHHhc-C--CeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcE
Q 008544 298 YHKELAGLEMDLYGNGEDFDQIQRAAKKL-K--LVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIV 372 (562)
Q Consensus 298 l~~~~~~~~l~ivG~g~~~~~l~~~~~~l-~--l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PV 372 (562)
+.++.|++++++ |.|++. .+++.++++ + .++.+.+. ..+..++|+.||++|+|| |.+++|||+||+||
T Consensus 232 l~~~~~~~~~i~-~~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pv 304 (375)
T 3beo_A 232 LVDKHEDVQVVY-PVHMNP-VVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPV 304 (375)
T ss_dssp HHHHCTTEEEEE-ECCSCH-HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCE
T ss_pred HHhhCCCeEEEE-eCCCCH-HHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCE
Confidence 988888999654 666653 333333332 2 24666543 336669999999999999 67799999999999
Q ss_pred EeeCC-CC-ccccccCCceEee-CCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHH
Q 008544 373 VCANH-PS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAE 435 (562)
Q Consensus 373 I~t~~-~~-~e~v~~~~~g~~~-~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~ 435 (562)
|+++. ++ .|++.++ +|+++ .|+++++++|.++++|++. +|+++++ +.++|+.+++.+.+.++
T Consensus 305 i~~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 305 LVLRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp EECSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99965 66 8888877 89988 5999999999999998764 5665555 67999999999988764
No 20
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.91 E-value=3.6e-24 Score=195.66 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=128.3
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCC--CChHHHHhhcCEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGR--DHADPIFHDYKVFL 350 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~adv~v 350 (562)
.++++|+|++.++||++.+++++..+. +.|+++|+++|.|++.+.+++.++++++++.+ +.. ++..++|+.+|++|
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v 79 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYV 79 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEE
Confidence 467999999999999999999999984 45799999999999999999999999986666 443 34559999999999
Q ss_pred EccCCCCCcHHHHHHHHcCC-cEEee-CCCC-ccccccCCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH---hcCC
Q 008544 351 NPSTTDVVCTATAEALAMGK-IVVCA-NHPS-NDFFKQFPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT---HQLS 422 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma~G~-PVI~t-~~~~-~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar---~~~s 422 (562)
+||..|+||++++|||+||+ |||++ +.++ .+++.++.+.+..+|+++++++|.+++++++. .|+++++ ++|+
T Consensus 80 ~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s 159 (166)
T 3qhp_A 80 HAANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYT 159 (166)
T ss_dssp ECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred ECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 99995 5566 88888877755556999999999999998875 7777776 7899
Q ss_pred HHHHHHH
Q 008544 423 WESATER 429 (562)
Q Consensus 423 w~~~~~~ 429 (562)
|+.++++
T Consensus 160 ~~~~~~~ 166 (166)
T 3qhp_A 160 LENSVIQ 166 (166)
T ss_dssp -------
T ss_pred hhhhhcC
Confidence 9988764
No 21
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.90 E-value=9.3e-24 Score=198.94 Aligned_cols=169 Identities=19% Similarity=0.212 Sum_probs=145.9
Q ss_pred ccccCCCCcC--cch------hhhHHhhcCCCCCccEEEEEeecc-ccCCHHHHHHHHHHHH--HhcCCcEEEEEeCCC-
Q 008544 247 VHGVNPKFLE--IGE------KKMEQQQNGNKAFTKGAYYIGRMV-WSKGYEELLGLLNIYH--KELAGLEMDLYGNGE- 314 (562)
Q Consensus 247 v~GVd~~~~~--~~~------~~~~~~~~~~~~~~~~il~vGr~~-~~Kg~~~ll~a~~~l~--~~~~~~~l~ivG~g~- 314 (562)
.+|||.+.|. +.. ....+...++++ .++++|+|++. +.||++.+++++..+. ++.|+++|+++|.++
T Consensus 3 pngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~-~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~ 81 (200)
T 2bfw_A 3 HNGIDCSFWNESYLTGSRDERKKSLLSKFGMDE-GVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDP 81 (200)
T ss_dssp --CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCS-CEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCH
T ss_pred CCccChhhccccccccchhhHHHHHHHHcCCCC-CCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCCh
Confidence 4699998887 665 444566677665 55999999999 9999999999999997 777899999999998
Q ss_pred -CHHHHHHHHHhcCCeeEE-eCCCC--ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCce
Q 008544 315 -DFDQIQRAAKKLKLVVRV-YPGRD--HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNC 389 (562)
Q Consensus 315 -~~~~l~~~~~~l~l~~~~-~~~~~--~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g 389 (562)
..+.+++.+++++ ++++ ++..+ ++.++|+.||++|+||..|++|++++|||+||+|||+++.++ .+++ ++.+|
T Consensus 82 ~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g 159 (200)
T 2bfw_A 82 ELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETG 159 (200)
T ss_dssp HHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTC
T ss_pred HHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCce
Confidence 7888999999888 7888 77766 666999999999999999999999999999999999999987 8888 88999
Q ss_pred EeeC--CHHHHHHHHHHHHh-CCCC--CccHHHH
Q 008544 390 RTYD--GRNGFVEATLKALA-EEPA--QPTDAQT 418 (562)
Q Consensus 390 ~~~~--d~~~la~~i~~ll~-~~~~--~l~~~ar 418 (562)
++++ |+++++++|.++++ |+.. +|+++++
T Consensus 160 ~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~ 193 (200)
T 2bfw_A 160 ILVKAGDPGELANAILKALELSRSDLSKFRENCK 193 (200)
T ss_dssp EEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9985 99999999999999 8765 6666655
No 22
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.90 E-value=1.7e-24 Score=225.06 Aligned_cols=271 Identities=11% Similarity=-0.008 Sum_probs=178.1
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHH-HHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNS-WLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad 227 (562)
...+.+++++.+||+||+++.....+. +...++..+ |++.+.|+... +... . . +.....+ ++.+ .+|
T Consensus 75 ~~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v~~~~~~~~-~~~~--~-~----~~~~~~~~~~~~-~~d 143 (384)
T 1vgv_A 75 LEGLKPILAEFKPDVVLVHGDTTTTLA--TSLAAFYQRIPVGHVEAGLRT-GDLY--S-P----WPEEANRTLTGH-LAM 143 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHTTTCCEEEESCCCCC-SCTT--S-S----TTHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH--HHHHHHHHCCCEEEEeccccc-cccc--C-C----CchHhhHHHHHh-hcc
Confidence 455778888899999999976333333 223344434 88877775421 1100 0 0 0011112 2233 389
Q ss_pred EEEEcChhhhccCC------Cccccc-ccc-CCCCcCcch-------hhhHHhhcC-CCC-CccEEEEEeecccc-CCHH
Q 008544 228 KVIRLSAATQEYPN------SIVCNV-HGV-NPKFLEIGE-------KKMEQQQNG-NKA-FTKGAYYIGRMVWS-KGYE 289 (562)
Q Consensus 228 ~vi~~S~~~~~~~~------~~~~~v-~GV-d~~~~~~~~-------~~~~~~~~~-~~~-~~~~il~vGr~~~~-Kg~~ 289 (562)
.++++|+..++... +.+..+ +|+ |...+.+.. ....+...+ +++ ...+++++||+.+. ||++
T Consensus 144 ~ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~ 223 (384)
T 1vgv_A 144 YHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFE 223 (384)
T ss_dssp EEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHH
T ss_pred EEEcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHH
Confidence 99999988877321 122222 342 221111110 001123334 433 34567899999876 9999
Q ss_pred HHHHHHHHHHHhcCCcEEEEE-eCCC-CHHHHHHHHHhcCCeeEEeC--CCCChHHHHhhcCEEEEccCCCCCcHHHHHH
Q 008544 290 ELLGLLNIYHKELAGLEMDLY-GNGE-DFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEA 365 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~iv-G~g~-~~~~l~~~~~~l~l~~~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEA 365 (562)
.+++|+.++.++.|++++++. |.++ ..+.+++.+... .++.+.+ ++.+..++|+.||++|+|| |..++||
T Consensus 224 ~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA 297 (384)
T 1vgv_A 224 EICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEA 297 (384)
T ss_dssp HHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTG
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHH
Confidence 999999999888889999886 4332 245555554322 2466643 3456779999999999999 3348999
Q ss_pred HHcCCcEEeeCC-CC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHHhc
Q 008544 366 LAMGKIVVCANH-PS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAELV 437 (562)
Q Consensus 366 ma~G~PVI~t~~-~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~~~ 437 (562)
|+||+|||+++. ++ .|++.++ +|++++ |+++++++|.++++|++. +|+++++ ..++|+.+++.+.+.|++.
T Consensus 298 ~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 298 PSLGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL 376 (384)
T ss_dssp GGGTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCCCC
T ss_pred HHcCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHHhh
Confidence 999999999987 66 7888877 999884 999999999999998864 5665554 6799999999999888766
Q ss_pred C
Q 008544 438 G 438 (562)
Q Consensus 438 ~ 438 (562)
.
T Consensus 377 ~ 377 (384)
T 1vgv_A 377 G 377 (384)
T ss_dssp -
T ss_pred c
Confidence 5
No 23
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.90 E-value=2.6e-23 Score=221.78 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=141.4
Q ss_pred cccCCCCcCcch-------hhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCC----cEEEEEeCC---
Q 008544 248 HGVNPKFLEIGE-------KKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAG----LEMDLYGNG--- 313 (562)
Q Consensus 248 ~GVd~~~~~~~~-------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~----~~l~ivG~g--- 313 (562)
+|||++.|.+.. ....+...+ +.++|+++||+.+.||++.+++|++++.+++|+ ++|+++|.+
T Consensus 226 ~GID~~~f~~~~~~~~~~~~~~lr~~~~---~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~ 302 (482)
T 1uqt_A 226 IGIEPKEIAKQAAGPLPPKLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG 302 (482)
T ss_dssp CCCCHHHHHHHHHSCCCHHHHHHHHHTT---TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCST
T ss_pred ccCCHHHHHHHhcCcchHHHHHHHHHhC---CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCcc
Confidence 588887664321 112233333 478999999999999999999999999888775 689999963
Q ss_pred --CC----HHHHHHHHHhcCC--------eeEEeCC---CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCC-----c
Q 008544 314 --ED----FDQIQRAAKKLKL--------VVRVYPG---RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGK-----I 371 (562)
Q Consensus 314 --~~----~~~l~~~~~~l~l--------~~~~~~~---~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~-----P 371 (562)
++ .+++++++.+++. .+.++++ .+++.++|+.||+||+||..||||++++||||||+ |
T Consensus 303 ~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gp 382 (482)
T 1uqt_A 303 DVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGV 382 (482)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCE
T ss_pred chHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCC
Confidence 21 2344555544331 2566655 33444899999999999999999999999999997 9
Q ss_pred EEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---CccHHHH---hcCCHHHHHHHHHHHHHhcC
Q 008544 372 VVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQT---HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 372 VI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~~ar---~~~sw~~~~~~~~~~y~~~~ 438 (562)
||+|+.+| .+.+. +|++++ |+++++++|.+++++++. .+.++++ .+|+|+..++++++.|+.+.
T Consensus 383 vV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~~ 455 (482)
T 1uqt_A 383 LVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (482)
T ss_dssp EEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred EEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence 99998765 66662 778875 999999999999997653 5555555 67999999999999998873
No 24
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.89 E-value=3.6e-22 Score=214.27 Aligned_cols=277 Identities=14% Similarity=0.088 Sum_probs=173.7
Q ss_pred CcCCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCc-HHH----------HhhhhchH-HHHH---H--HHHHH
Q 008544 158 PDEEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNY-LEY----------VKREKNDR-LQAF---L--LEFVN 218 (562)
Q Consensus 158 ~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~-~~~----------~~~~~~~~-~~~~---~--~~~~~ 218 (562)
...+|||+|+|........ ..++.... +.|+++|... -.+ ......+. ..+. + ...+.
T Consensus 178 ~~~~pdIiH~HDW~tg~~~---~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~E 254 (725)
T 3nb0_A 178 DSQHAIVAHFHEWLAGVAL---PLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIE 254 (725)
T ss_dssp CCSEEEEEEEESGGGCTHH---HHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCcEEEeCchhhhHHH---HHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHH
Confidence 3466999999997665221 22333332 7999999662 111 00000000 0000 0 11112
Q ss_pred HHHHHHhccEEEEcChhhhc----c---CCCccccccccCCCCcCcchh-----hhHHhh------------cCCCCCc-
Q 008544 219 SWLARVHCHKVIRLSAATQE----Y---PNSIVCNVHGVNPKFLEIGEK-----KMEQQQ------------NGNKAFT- 273 (562)
Q Consensus 219 ~~~~~~~ad~vi~~S~~~~~----~---~~~~~~~v~GVd~~~~~~~~~-----~~~~~~------------~~~~~~~- 273 (562)
+.... +||+|+|+|+.+++ + ....+ .+||||.+.|+|... ...+.+ .+++.++
T Consensus 255 Kaga~-~AD~ITTVS~~yA~Ei~~Ll~r~~d~i-IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~ 332 (725)
T 3nb0_A 255 RAAAH-SADVFTTVSQITAFEAEHLLKRKPDGI-LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNT 332 (725)
T ss_dssp HHHHH-HSSEEEESSHHHHHHHHHHTSSCCSEE-CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGE
T ss_pred HHHHH-hCCEEEECCHHHHHHHHHHhcCCCCEE-EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCce
Confidence 22222 59999999988876 2 22333 678999999987511 111111 1343334
Q ss_pred cEEEEEeecc-ccCCHHHHHHHHHHHHHhc-------CCcEEEEEeCCCCH-----------------------------
Q 008544 274 KGAYYIGRMV-WSKGYEELLGLLNIYHKEL-------AGLEMDLYGNGEDF----------------------------- 316 (562)
Q Consensus 274 ~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~-------~~~~l~ivG~g~~~----------------------------- 316 (562)
+++..+||+. ..||++.+++|+.++.... .-+.|+|+..+...
T Consensus 333 liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 412 (725)
T 3nb0_A 333 LYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKR 412 (725)
T ss_dssp EEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHH
Confidence 4455579999 6899999999999997541 12567776553110
Q ss_pred ------------------------------------------------------------HHHHHHHHhcCCe------e
Q 008544 317 ------------------------------------------------------------DQIQRAAKKLKLV------V 330 (562)
Q Consensus 317 ------------------------------------------------------------~~l~~~~~~l~l~------~ 330 (562)
+.+...++++++. |
T Consensus 413 ~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drV 492 (725)
T 3nb0_A 413 IFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRV 492 (725)
T ss_dssp HHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSE
T ss_pred HHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCce
Confidence 1111222333332 2
Q ss_pred --EEeCCC---------CChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccC-------CceEe
Q 008544 331 --RVYPGR---------DHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQF-------PNCRT 391 (562)
Q Consensus 331 --~~~~~~---------~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~-------~~g~~ 391 (562)
.|++.+ .+..++|+.||+||+||.+|+||++++||||||+|||+|+.+| .+.+.++ .+|+.
T Consensus 493 KVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~l 572 (725)
T 3nb0_A 493 KMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIY 572 (725)
T ss_dssp EEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEE
T ss_pred eEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEE
Confidence 233332 1467999999999999999999999999999999999999998 8888765 35876
Q ss_pred e-----CCHHHHHHHHHHHHh----CCCC---CccHHHH---hcCCHHHHHHHHHHHHHhcCc
Q 008544 392 Y-----DGRNGFVEATLKALA----EEPA---QPTDAQT---HQLSWESATERFLQVAELVGD 439 (562)
Q Consensus 392 ~-----~d~~~la~~i~~ll~----~~~~---~l~~~ar---~~~sw~~~~~~~~~~y~~~~~ 439 (562)
+ .|+++++++|.+++. .++. .|+++++ +.|+|++++++++++|+.+..
T Consensus 573 V~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL~ 635 (725)
T 3nb0_A 573 IVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLALR 635 (725)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 5 156666666655553 3332 5666665 789999999999999998763
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.88 E-value=1.8e-22 Score=209.35 Aligned_cols=269 Identities=9% Similarity=-0.087 Sum_probs=170.8
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
...+.+++++.+||+||++......+. +...++..+ |++ ++|+....+..+... .......++.+. +|.
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~--~~~~a~~~~ip~v-~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~ 149 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFA--VAWAAFLEGIPVG-HVEAGLRSGNLKEPF------PEEANRRLTDVL-TDL 149 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHH--HHHHHHHTTCCEE-EETCCCCCSCTTSST------THHHHHHHHHHH-CSE
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHH--HHHHHHHhCCCEE-EEeCCCccccccCCC------chHHHHHHHHHH-hce
Confidence 345777888899999999976544333 233444444 765 455443211110000 011122233343 899
Q ss_pred EEEcChhhhccCC------Cccccc-cc-cCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHH
Q 008544 229 VIRLSAATQEYPN------SIVCNV-HG-VNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHK 300 (562)
Q Consensus 229 vi~~S~~~~~~~~------~~~~~v-~G-Vd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~ 300 (562)
+++.|+..++... +.+..+ ++ +|...+.+ .....+.. .++...+++++||+...||++.+++|+..+.+
T Consensus 150 ~~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~-~~~~~~~~--~~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~ 226 (376)
T 1v4v_A 150 DFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAA-KLGRLPEG--LPEGPYVTVTMHRRENWPLLSDLAQALKRVAE 226 (376)
T ss_dssp EEESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHH-HHCCCCTT--CCSSCEEEECCCCGGGGGGHHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhh-hhhHHHHh--cCCCCEEEEEeCcccchHHHHHHHHHHHHHHh
Confidence 9999988876432 112122 22 22111100 00000111 12334566789999888899999999999988
Q ss_pred hcCCcEEEEE-eCCC-CHHHHHHHHHhcCCeeEEeC--CCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLY-GNGE-DFDQIQRAAKKLKLVVRVYP--GRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~iv-G~g~-~~~~l~~~~~~l~l~~~~~~--~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.|+++++++ |.++ ..+.+++.+.. ..++.+.+ +..+..++|+.||++|.|| + |+ ++||||||+|||+++
T Consensus 227 ~~~~~~lv~~~g~~~~~~~~l~~~~~~-~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~ 300 (376)
T 1v4v_A 227 AFPHLTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLR 300 (376)
T ss_dssp HCTTSEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECS
T ss_pred hCCCeEEEEECCCCHHHHHHHHHHhcc-CCCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEecc
Confidence 8889999886 7554 35666666543 22566664 3346679999999999999 3 33 889999999999984
Q ss_pred -CCC-ccccccCCceEee-CCHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHHHHhcCc
Q 008544 377 -HPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQVAELVGD 439 (562)
Q Consensus 377 -~~~-~e~v~~~~~g~~~-~d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~~~~~~~~y~~~~~ 439 (562)
.++ .+++.+ .+|+++ .|+++++++|.++++|++. +|++ ..+.|.|...++++.+.++....
T Consensus 301 ~~~~~~~~~~~-g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~~~ 366 (376)
T 1v4v_A 301 NVTERPEGLKA-GILKLAGTDPEGVYRVVKGLLENPEELSRMRK-AKNPYGDGKAGLMVARGVAWRLG 366 (376)
T ss_dssp SSCSCHHHHHH-TSEEECCSCHHHHHHHHHHHHTCHHHHHHHHH-SCCSSCCSCHHHHHHHHHHHHTT
T ss_pred CCCcchhhhcC-CceEECCCCHHHHHHHHHHHHhChHhhhhhcc-cCCCCCCChHHHHHHHHHHHHhc
Confidence 566 666654 478888 6999999999999998764 5553 22567777788888888776653
No 26
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.86 E-value=2.3e-20 Score=193.60 Aligned_cols=235 Identities=9% Similarity=-0.023 Sum_probs=156.0
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEE
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 231 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 231 (562)
.+.+++++.+||+||++.......+ .. ..++ |++...+. +.. .. +.+++.+. +|.+++
T Consensus 102 ~l~~~l~~~~pDiv~~~~~~~~~~~--~~-~~~~--p~~~~~~~-~~~------~~---------~~~~~~~~-~d~ii~ 159 (374)
T 2xci_A 102 SVKRFEELSKPKALIVVEREFWPSL--II-FTKV--PKILVNAY-AKG------SL---------IEKILSKK-FDLIIM 159 (374)
T ss_dssp HHHHHHHHHCCSEEEEESCCCCHHH--HH-HCCS--CEEEEEEC-CCC------CH---------HHHHHHTT-CSEEEE
T ss_pred HHHHHHHHhCCCEEEEECccCcHHH--HH-HHhC--CEEEEEee-cCc------hH---------HHHHHHHh-CCEEEE
Confidence 4677888899999998654332111 11 1122 65544332 111 00 12222232 799999
Q ss_pred cChhhhccCCCc-cccccccCCC-CcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE
Q 008544 232 LSAATQEYPNSI-VCNVHGVNPK-FLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL 309 (562)
Q Consensus 232 ~S~~~~~~~~~~-~~~v~GVd~~-~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i 309 (562)
+|+..++...+. +..+. +.++ .|.+.... . ... ..+++++.|+ +.||++.+++|+.++.++.|+++|+|
T Consensus 160 ~S~~~~~~l~~~g~~ki~-vi~n~~f~~~~~~--~--~~l--~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvi 230 (374)
T 2xci_A 160 RTQEDVEKFKTFGAKRVF-SCGNLKFICQKGK--G--IKL--KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLIL 230 (374)
T ss_dssp SCHHHHHHHHTTTCCSEE-ECCCGGGCCCCCS--C--CCC--SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEE
T ss_pred CCHHHHHHHHHcCCCeEE-EcCCCccCCCcCh--h--hhh--cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEE
Confidence 999888743221 11111 1111 11111100 0 011 1255666664 57899999999999998889999999
Q ss_pred EeCCCCH-HHHHHHHHhcCCee----------EEeCCCCChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEee-C
Q 008544 310 YGNGEDF-DQIQRAAKKLKLVV----------RVYPGRDHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCA-N 376 (562)
Q Consensus 310 vG~g~~~-~~l~~~~~~l~l~~----------~~~~~~~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t-~ 376 (562)
+|+|+++ ++++++++++++.. .+.+...++.++|+.||++++||. .|++|++++||||||+|||++ +
T Consensus 231 vG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~ 310 (374)
T 2xci_A 231 VPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPY 310 (374)
T ss_dssp EESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSC
T ss_pred ECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCC
Confidence 9999876 68999999988752 223446889999999999888864 577899999999999999986 5
Q ss_pred CCC-cccccc---CCceEeeCCHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 377 HPS-NDFFKQ---FPNCRTYDGRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 377 ~~~-~e~v~~---~~~g~~~~d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
.++ .|++.+ ...++.++|+++|+++|.++++| +. +|+++++
T Consensus 311 ~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar 357 (374)
T 2xci_A 311 THKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSR 357 (374)
T ss_dssp CTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHH
T ss_pred ccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 565 776654 23334457999999999999998 75 8888887
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.86 E-value=1.9e-21 Score=179.96 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=124.6
Q ss_pred hcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHH--hcCC--eeEEeCCCCC--h
Q 008544 266 QNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAK--KLKL--VVRVYPGRDH--A 339 (562)
Q Consensus 266 ~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~--~l~l--~~~~~~~~~~--~ 339 (562)
....+.+.++++|+|++.+.||++.+++++..+ ++++|+++|.|++.+.+++.++ ++++ ++.+.+..++ +
T Consensus 16 ~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~ 91 (177)
T 2f9f_A 16 KFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEEL 91 (177)
T ss_dssp TCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHH
T ss_pred ccccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHH
Confidence 344566688999999999999999999999776 6899999999988777888877 5554 4667777665 6
Q ss_pred HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccccCCceEee-CCHHHHHHHHHHHHhCCCC
Q 008544 340 DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFKQFPNCRTY-DGRNGFVEATLKALAEEPA 411 (562)
Q Consensus 340 ~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~~~~g~~~-~d~~~la~~i~~ll~~~~~ 411 (562)
.++|+.+|++|+||..|++|++++|||+||+|||+++.++ .+++.++.+|+++ +|+++++++|.++++|+..
T Consensus 92 ~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 92 IDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp HHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred HHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHH
Confidence 6999999999999999999999999999999999999987 8999999999987 7999999999999998874
No 28
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.84 E-value=8.3e-20 Score=192.80 Aligned_cols=265 Identities=13% Similarity=0.037 Sum_probs=178.8
Q ss_pred CCCcEEEecCCchhhhhhchHHHHhhcC--CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhhh
Q 008544 160 EEADIAVLEEPEHLTWFHHGKRWKAKFR--FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAATQ 237 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~~~~~~~~~~~~~--~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 237 (562)
..-|+|.+|....+ .+ ...+..+.. ++.+..|+.++...-...... .+.+.+.+-+.. ||.|...+....
T Consensus 148 ~~~D~VwVhDYhL~-ll--p~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp~---~~r~ell~gll~--~DligF~t~~y~ 219 (496)
T 3t5t_A 148 SADPVYLVHDYQLV-GV--PALLREQRPDAPILLFVHIPWPSADYWRILPK---EIRTGILHGMLP--ATTIGFFADRWC 219 (496)
T ss_dssp CSSCEEEEESGGGT-TH--HHHHHHHCTTSCEEEECCSCCCCHHHHTTSCH---HHHHHHHHHHTT--SSEEEESSHHHH
T ss_pred CCCCEEEEeCccHh-HH--HHHHHhhCCCCeEEEEEcCCCCCHHHHhhCcH---hHHHHHHHHHHh--CCEEEEecHHHH
Confidence 35689999998766 22 233444333 789999998775443221111 012222233333 688888886544
Q ss_pred cc--------C-C-----C-----------cc-ccccccCCCCcCcchh---hhHHhhcCCCCCccEEEEEeeccccCCH
Q 008544 238 EY--------P-N-----S-----------IV-CNVHGVNPKFLEIGEK---KMEQQQNGNKAFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 238 ~~--------~-~-----~-----------~~-~~v~GVd~~~~~~~~~---~~~~~~~~~~~~~~~il~vGr~~~~Kg~ 288 (562)
+. . . . .+ +..+|||++.|.+... ...+...+ +.++|+++||+++.||+
T Consensus 220 ~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~---~~~lIl~VgRLd~~KGi 296 (496)
T 3t5t_A 220 RNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKNA 296 (496)
T ss_dssp HHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---TSEEEEEEEESSGGGCH
T ss_pred HHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---CceEEEEcccCccccCH
Confidence 31 1 1 0 11 1224999987765432 22233333 47899999999999999
Q ss_pred HHHHHHHHHHHHhcCC---cEEEEEeC-----CCCH----HHHHHHHHhcCC-----eeEEeCCC--CChHHHHhhcCEE
Q 008544 289 EELLGLLNIYHKELAG---LEMDLYGN-----GEDF----DQIQRAAKKLKL-----VVRVYPGR--DHADPIFHDYKVF 349 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~---~~l~ivG~-----g~~~----~~l~~~~~~l~l-----~~~~~~~~--~~~~~l~~~adv~ 349 (562)
+.+++|+ ++.+++|+ +.|+++|. +++. +++++++.+.+. .+.+++.. ++...+|+.||+|
T Consensus 297 ~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~ 375 (496)
T 3t5t_A 297 ERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLL 375 (496)
T ss_dssp HHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEE
T ss_pred HHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEE
Confidence 9999999 99888886 46888864 2222 344455444432 46666553 3445999999999
Q ss_pred EEccCCCCCcHHHHHHHHcC---CcEEeeCCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC---CccHHHH--
Q 008544 350 LNPSTTDVVCTATAEALAMG---KIVVCANHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA---QPTDAQT-- 418 (562)
Q Consensus 350 v~pS~~E~~~~~~lEAma~G---~PVI~t~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~---~l~~~ar-- 418 (562)
|+||..||||++.+|||||| .|+|.|+.+| .+.+. .+|++++ |+++++++|.++++++.. .+.++.+
T Consensus 376 vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l~--~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~ 453 (496)
T 3t5t_A 376 IFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVLG--EYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDA 453 (496)
T ss_dssp EECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHHG--GGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred EECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999997 8999998876 66663 3678875 999999999999998864 3333333
Q ss_pred -hcCCHHHHHHHHHHHHHhcC
Q 008544 419 -HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 419 -~~~sw~~~~~~~~~~y~~~~ 438 (562)
..++++.-++.+++..+...
T Consensus 454 V~~~d~~~W~~~fl~~L~~~~ 474 (496)
T 3t5t_A 454 ARPWTLEAWVQAQLDGLAADH 474 (496)
T ss_dssp HTTCBHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHhhcc
Confidence 78999999999998887664
No 29
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.79 E-value=1.5e-18 Score=181.78 Aligned_cols=357 Identities=10% Similarity=-0.030 Sum_probs=201.8
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchh--hHHHHHHHh-
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKE--QEAYVRWWL- 121 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~--~~~~~~~~~- 121 (562)
-+..+|||++++.. .+|.......+++.|.++| |+|+++++.. . ....-..++.+..... .......+.
T Consensus 16 ~~~~~MrIl~~~~~----~~Gh~~~~~~la~~L~~~G-heV~v~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 87 (412)
T 3otg_A 16 IEGRHMRVLFASLG----THGHTYPLLPLATAARAAG-HEVTFATGEG--F-AGTLRKLGFEPVATGMPVFDGFLAALRI 87 (412)
T ss_dssp --CCSCEEEEECCS----SHHHHGGGHHHHHHHHHTT-CEEEEEECGG--G-HHHHHHTTCEEEECCCCHHHHHHHHHHH
T ss_pred cccceeEEEEEcCC----CcccHHHHHHHHHHHHHCC-CEEEEEccHH--H-HHHHHhcCCceeecCcccccchhhhhhh
Confidence 34456999999843 3565566778999999998 9999998731 0 0000011222221110 001100000
Q ss_pred -hhccCCCCCcccccccccchhccchh---hhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCC
Q 008544 122 -EDRTGFTSTFDTRFYPGKFAADKKSI---LAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTN 196 (562)
Q Consensus 122 -~~~~~~~~~~~i~~y~~r~~~~~~~~---~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~ 196 (562)
..+... +.................. .....+.+++++.+||+||++..... +...+++.+ |++.+.|+.
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~-----~~~aa~~~giP~v~~~~~~ 161 (412)
T 3otg_A 88 RFDTDSP-EGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYG-----AGLAALKAGIPTICHGVGR 161 (412)
T ss_dssp HHSCSCC-TTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHHTCCEEEECCSC
T ss_pred hhcccCC-ccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhH-----HHHHHHHcCCCEEEecccc
Confidence 000000 0000000000000000000 01256777888899999998854433 223444445 888887765
Q ss_pred cHHHHhhhhchHHHHHHHHHHHHHHHH-----------HhccEEEEcChhhhccCCCcccc-ccccCCCCcCcchhhhHH
Q 008544 197 YLEYVKREKNDRLQAFLLEFVNSWLAR-----------VHCHKVIRLSAATQEYPNSIVCN-VHGVNPKFLEIGEKKMEQ 264 (562)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ad~vi~~S~~~~~~~~~~~~~-v~GVd~~~~~~~~~~~~~ 264 (562)
..... ....+.+.+..+..+ ..+|.+++.+....+.+...+.. ...+......... ...
T Consensus 162 ~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 232 (412)
T 3otg_A 162 DTPDD-------LTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAEQG--DLP 232 (412)
T ss_dssp CCCSH-------HHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCCCCC--CCC
T ss_pred cCchh-------hhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCCCCC--CCC
Confidence 32110 112233333333333 13678888887666544321110 0111111111000 001
Q ss_pred hh--cCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHH
Q 008544 265 QQ--NGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADP 341 (562)
Q Consensus 265 ~~--~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~ 341 (562)
.. ...++...++++.|++. .++.+.+.++++.+.+. ++++++++.+.. .+.+++ +..++.+.+.. +..+
T Consensus 233 ~~~~~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~~~l~~----~~~~v~~~~~~-~~~~ 304 (412)
T 3otg_A 233 AWLSSRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDVSGLGE----VPANVRLESWV-PQAA 304 (412)
T ss_dssp GGGGGSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCCTTCCC----CCTTEEEESCC-CHHH
T ss_pred CccccccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCChhhhcc----CCCcEEEeCCC-CHHH
Confidence 01 11223345667778875 77888888887777643 677777665443 333322 23346666666 7889
Q ss_pred HHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC-
Q 008544 342 IFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA- 411 (562)
Q Consensus 342 l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~- 411 (562)
+|+.||++|.+| .+.+++|||++|+|+|+.+.++ .+.+.+...|++++ |+++++++|.++++|+..
T Consensus 305 ~l~~ad~~v~~~----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHHG----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEESC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEECC----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 999999999775 3589999999999999986653 57777888888874 899999999999999875
Q ss_pred -CccHHHH---hcCCHHHHHHHHHHHHHh
Q 008544 412 -QPTDAQT---HQLSWESATERFLQVAEL 436 (562)
Q Consensus 412 -~l~~~ar---~~~sw~~~~~~~~~~y~~ 436 (562)
+|++.++ ..++|+.+++.+.++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 381 AGARAVAAEIAAMPGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHSCCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 6666555 778999999999998854
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.73 E-value=2.1e-16 Score=163.14 Aligned_cols=255 Identities=10% Similarity=-0.025 Sum_probs=157.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccE
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHK 228 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 228 (562)
+..+.+++++.+||+|+....+.... ....++..+ |++..-.+..+ +. .++++.++ ++.
T Consensus 81 ~~~~~~~l~~~~PDvVi~~g~~~s~p---~~laA~~~~iP~vihe~n~~~--------G~--------~nr~l~~~-a~~ 140 (365)
T 3s2u_A 81 LFQALRVIRQLRPVCVLGLGGYVTGP---GGLAARLNGVPLVIHEQNAVA--------GT--------ANRSLAPI-ARR 140 (365)
T ss_dssp HHHHHHHHHHHCCSEEEECSSSTHHH---HHHHHHHTTCCEEEEECSSSC--------CH--------HHHHHGGG-CSE
T ss_pred HHHHHHHHHhcCCCEEEEcCCcchHH---HHHHHHHcCCCEEEEecchhh--------hh--------HHHhhccc-cce
Confidence 44567788899999999987655411 122233333 66633222121 11 23445555 788
Q ss_pred EEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEE-EEeeccccCCHHHHHHHHHHHHHhcCCcEE
Q 008544 229 VIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAY-YIGRMVWSKGYEELLGLLNIYHKELAGLEM 307 (562)
Q Consensus 229 vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il-~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l 307 (562)
+++..+.......+.....+.+..+++... ....+.+++.+.++ +.|+....+..+.+.+++..+..+. ++.+
T Consensus 141 v~~~~~~~~~~~~k~~~~g~pvr~~~~~~~-----~~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~-~~~v 214 (365)
T 3s2u_A 141 VCEAFPDTFPASDKRLTTGNPVRGELFLDA-----HARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEI-RPAI 214 (365)
T ss_dssp EEESSTTSSCC---CEECCCCCCGGGCCCT-----TSSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTT-CCEE
T ss_pred eeecccccccCcCcEEEECCCCchhhccch-----hhhcccCCCCcEEEEECCcCCccccchhhHHHHHhccccc-ceEE
Confidence 877655432222222222233443443221 11233344445544 5566777777777888887765443 4555
Q ss_pred EEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC--------
Q 008544 308 DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-------- 379 (562)
Q Consensus 308 ~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-------- 379 (562)
++.++..+.+.+.+..+..+.++++++..+++.++|+.||++|.-+ .++++.|+|++|+|+|..+.+.
T Consensus 215 i~~~G~~~~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~ 290 (365)
T 3s2u_A 215 RHQAGRQHAEITAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTR 290 (365)
T ss_dssp EEECCTTTHHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHH
T ss_pred EEecCccccccccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHH
Confidence 5544334567777788888888889988999999999999999543 3789999999999999876652
Q ss_pred -ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHHHH
Q 008544 380 -NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESATERFLQVAE 435 (562)
Q Consensus 380 -~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~~~~~~~~y~ 435 (562)
.+.+.+...|++++ |+++|+++|.++++|++. +|++++++.-. ...++++.+..+
T Consensus 291 NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~-~~aa~~ia~~i~ 352 (365)
T 3s2u_A 291 NAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAK-PEATRTVVDACL 352 (365)
T ss_dssp HHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCC-TTHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHH
Confidence 24466666677753 689999999999999986 88888873221 223444444443
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.72 E-value=2.1e-17 Score=172.50 Aligned_cols=340 Identities=11% Similarity=0.035 Sum_probs=192.4
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCCC
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFTS 129 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~ 129 (562)
|||++|+..- | + ......+.+.|.+++++++.++++... . +.....+.. ....+
T Consensus 26 ~ki~~v~Gtr-~---~-~~~~a~li~~l~~~~~~~~~~~~tG~h----------~------~~~~~~~~~-----~~i~~ 79 (396)
T 3dzc_A 26 KKVLIVFGTR-P---E-AIKMAPLVQQLCQDNRFVAKVCVTGQH----------R------EMLDQVLEL-----FSITP 79 (396)
T ss_dssp EEEEEEECSH-H---H-HHHHHHHHHHHHHCTTEEEEEEECCSS----------S------HHHHHHHHH-----TTCCC
T ss_pred CeEEEEEecc-H---h-HHHHHHHHHHHHhCCCCcEEEEEeccc----------H------HHHHHHHHh-----cCCCC
Confidence 6999998765 3 2 233455678888875588887766210 0 101111111 11122
Q ss_pred CcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchH
Q 008544 130 TFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDR 208 (562)
Q Consensus 130 ~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~ 208 (562)
+..+................+..+.+++++.+||+||+++.....+. +...+++.+ |++. ++.....+..+..
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~--~~~aa~~~~IPv~h-~~ag~rs~~~~~~--- 153 (396)
T 3dzc_A 80 DFDLNIMEPGQTLNGVTSKILLGMQQVLSSEQPDVVLVHGDTATTFA--ASLAAYYQQIPVGH-VEAGLRTGNIYSP--- 153 (396)
T ss_dssp SEECCCCCTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTSHHHHH--HHHHHHTTTCCEEE-ETCCCCCSCTTSS---
T ss_pred ceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEECCchhHHH--HHHHHHHhCCCEEE-EECCccccccccC---
Confidence 22222110000001111223556888899999999999987665444 333444444 6553 3322111111100
Q ss_pred HHHHHHHHHHHHH-HHHhccEEEEcChhhhccC------CCccccc-c-ccCCCCcCcch-------hhhHHhhcC-CCC
Q 008544 209 LQAFLLEFVNSWL-ARVHCHKVIRLSAATQEYP------NSIVCNV-H-GVNPKFLEIGE-------KKMEQQQNG-NKA 271 (562)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~ad~vi~~S~~~~~~~------~~~~~~v-~-GVd~~~~~~~~-------~~~~~~~~~-~~~ 271 (562)
+....++.+ .+. +|.+++.|+..++.. .+.+..+ + ++|...+.+.. ....+...+ +++
T Consensus 154 ----~~~~~~r~~~~~~-a~~~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~ 228 (396)
T 3dzc_A 154 ----WPEEGNRKLTAAL-TQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDA 228 (396)
T ss_dssp ----TTHHHHHHHHHHT-CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCT
T ss_pred ----CcHHHHHHHHHHh-cCEEECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCC
Confidence 001122232 333 899999998877632 2222222 2 23322211111 022234455 344
Q ss_pred CccEEE-EEeec-cccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCC-HHHHHHHHHhcCCeeEEeCCC--CChHHHHhh
Q 008544 272 FTKGAY-YIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-GNGED-FDQIQRAAKKLKLVVRVYPGR--DHADPIFHD 345 (562)
Q Consensus 272 ~~~~il-~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~-~~~l~~~~~~l~l~~~~~~~~--~~~~~l~~~ 345 (562)
+.++++ +.+|. ...|+++.+++|+.++.+++|++++++. |.++. .+.+++... ...++.+++.. .+...+|+.
T Consensus 229 ~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ 307 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLK-GVSNIVLIEPQQYLPFVYLMDR 307 (396)
T ss_dssp TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT-TCTTEEEECCCCHHHHHHHHHH
T ss_pred CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc-CCCCEEEeCCCCHHHHHHHHHh
Confidence 445554 44454 3458899999999999888899999886 54432 233333221 12246665443 466699999
Q ss_pred cCEEEEccCCCCCcHHHHHHHHcCCcEEee-CCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHHhc
Q 008544 346 YKVFLNPSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQTHQ 420 (562)
Q Consensus 346 adv~v~pS~~E~~~~~~lEAma~G~PVI~t-~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar~~ 420 (562)
||++|.+| | ++ .+|||++|+|||++ +.++ .|.+.++. +++++ |++++++++.++++|++. +|++++ ..
T Consensus 308 ad~vv~~S---G-g~-~~EA~a~G~PvV~~~~~~~~~e~v~~G~-~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~~-~~ 380 (396)
T 3dzc_A 308 AHIILTDS---G-GI-QEEAPSLGKPVLVMRETTERPEAVAAGT-VKLVGTNQQQICDALSLLLTDPQAYQAMSQAH-NP 380 (396)
T ss_dssp CSEEEESC---S-GG-GTTGGGGTCCEEECCSSCSCHHHHHHTS-EEECTTCHHHHHHHHHHHHHCHHHHHHHHTSC-CT
T ss_pred cCEEEECC---c-cH-HHHHHHcCCCEEEccCCCcchHHHHcCc-eEEcCCCHHHHHHHHHHHHcCHHHHHHHhhcc-CC
Confidence 99999998 3 33 38999999999999 6666 77887764 56665 899999999999998764 444332 33
Q ss_pred CCHHHHHHHHHHHH
Q 008544 421 LSWESATERFLQVA 434 (562)
Q Consensus 421 ~sw~~~~~~~~~~y 434 (562)
|.....++++.+..
T Consensus 381 ~~~~~aa~ri~~~l 394 (396)
T 3dzc_A 381 YGDGKACQRIADIL 394 (396)
T ss_dssp TCCSCHHHHHHHHH
T ss_pred CcCChHHHHHHHHH
Confidence 55556666666544
No 32
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.69 E-value=2e-17 Score=168.24 Aligned_cols=240 Identities=11% Similarity=-0.038 Sum_probs=151.5
Q ss_pred CCCcEEEecCCchhhh-h-hchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEEcChhh
Q 008544 160 EEADIAVLEEPEHLTW-F-HHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIRLSAAT 236 (562)
Q Consensus 160 ~~pDvV~~~~~~~~~~-~-~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~ 236 (562)
.++|+|++++|...+. + .....+.++.+ +++..+|+.++..... . .+.....+++.+. ||.||+.|+.+
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~--~-----~~~~~~E~~~y~~-aD~Ii~~S~~~ 144 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG--N-----FYLMDRTIAYYNK-ADVVVAPSQKM 144 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG--G-----GGGHHHHHHHHTT-CSEEEESCHHH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc--c-----hhhHHHHHHHHHH-CCEEEECCHHH
Confidence 4589999999975321 1 11111222324 8999999876543211 1 1111234455554 89999999999
Q ss_pred hccCCCcccc-ccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Q 008544 237 QEYPNSIVCN-VHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED 315 (562)
Q Consensus 237 ~~~~~~~~~~-v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~ 315 (562)
++...+.... ..-++.+.++..... ....+.+.+.++|+|++.....+ +. + .++++|+++|+|++
T Consensus 145 ~~~l~~~G~~~~ki~~~~~~~~~~~~----~~~~~~~~~~i~yaG~l~k~~~L----~~---l---~~~~~f~ivG~G~~ 210 (339)
T 3rhz_A 145 IDKLRDFGMNVSKTVVQGMWDHPTQA----PMFPAGLKREIHFPGNPERFSFV----KE---W---KYDIPLKVYTWQNV 210 (339)
T ss_dssp HHHHHHTTCCCSEEEECCSCCCCCCC----CCCCCEEEEEEEECSCTTTCGGG----GG---C---CCSSCEEEEESCCC
T ss_pred HHHHHHcCCCcCceeecCCCCccCcc----cccccCCCcEEEEeCCcchhhHH----Hh---C---CCCCeEEEEeCCcc
Confidence 8853221111 111111112211100 01123346789999999853222 11 1 37899999999987
Q ss_pred HHHHHHHHHhcCCeeEEeCCCCC--hHHHHhhcCEEEEc-cC------CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc
Q 008544 316 FDQIQRAAKKLKLVVRVYPGRDH--ADPIFHDYKVFLNP-ST------TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ 385 (562)
Q Consensus 316 ~~~l~~~~~~l~l~~~~~~~~~~--~~~l~~~adv~v~p-S~------~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~ 385 (562)
. .++ ++.++|..+. +..+++.+|+.+.+ +. ...+|.+++||||||+|||+++.++ .+++.+
T Consensus 211 ~--------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~ 281 (339)
T 3rhz_A 211 E--------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIEN 281 (339)
T ss_dssp C--------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHH
T ss_pred c--------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHh
Confidence 5 245 6777766543 34778788877775 11 1246999999999999999999887 899999
Q ss_pred CCceEeeCCHHHHHHHHHHHHhCCCCCccHHHH---hcCCHHHHHHHH
Q 008544 386 FPNCRTYDGRNGFVEATLKALAEEPAQPTDAQT---HQLSWESATERF 430 (562)
Q Consensus 386 ~~~g~~~~d~~~la~~i~~ll~~~~~~l~~~ar---~~~sw~~~~~~~ 430 (562)
+.+|+++++.++++++|..+..+.-.+|+++++ +.++|+..+++.
T Consensus 282 ~~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~~~f~k~~ 329 (339)
T 3rhz_A 282 NGLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRRL 329 (339)
T ss_dssp HTCEEEESSHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHTTHHHHHH
T ss_pred CCeEEEeCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 999999999999999999875433237888887 445555555544
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.69 E-value=1.8e-16 Score=165.68 Aligned_cols=341 Identities=10% Similarity=0.026 Sum_probs=189.8
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcC-CCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDG-ERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGF 127 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~G-g~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (562)
++||++|+..- | + ......+.+.|.+++ ++++.++++... + .. . ...+.. ...
T Consensus 27 ~~kI~~v~Gtr-~---~-~~~~a~li~~l~~~~~~~~~~~~~tG~h-------~------~m-~--~~~~~~-----~~i 80 (403)
T 3ot5_A 27 KIKVMSIFGTR-P---E-AIKMAPLVLALEKEPETFESTVVITAQH-------R------EM-L--DQVLEI-----FDI 80 (403)
T ss_dssp CEEEEEEECSH-H---H-HHHHHHHHHHHHTCTTTEEEEEEECC-------------------C--HHHHHH-----TTC
T ss_pred cceEEEEEecC-h---h-HHHHHHHHHHHHhCCCCCcEEEEEecCc-------H------HH-H--HHHHHh-----cCC
Confidence 36999998765 2 2 233455678888874 489888876210 0 00 0 011111 111
Q ss_pred CCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhc
Q 008544 128 TSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKN 206 (562)
Q Consensus 128 ~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~ 206 (562)
.++..+................+..+.+++++.+||+|++++.....+. +...+++.+ |++ .++.....+..+...
T Consensus 81 ~~~~~l~v~~~~~~~~~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~--~~laA~~~~IPv~-h~~aglrs~~~~~~~ 157 (403)
T 3ot5_A 81 KPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTTSFA--AGLATFYQQKMLG-HVEAGLRTWNKYSPF 157 (403)
T ss_dssp CCSEECCCCC-CCCHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHH--HHHHHHHTTCEEE-EESCCCCCSCTTSST
T ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEECCchhHHH--HHHHHHHhCCCEE-EEECCccccccccCC
Confidence 1222222110000000111223556888899999999999987655443 333445545 554 333221111110000
Q ss_pred hHHHHHHHHHHHHHHHHHhccEEEEcChhhhccC------CCccccc-c-ccCCCCcCcch--hhhHHhhcCCCCCccEE
Q 008544 207 DRLQAFLLEFVNSWLARVHCHKVIRLSAATQEYP------NSIVCNV-H-GVNPKFLEIGE--KKMEQQQNGNKAFTKGA 276 (562)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~------~~~~~~v-~-GVd~~~~~~~~--~~~~~~~~~~~~~~~~i 276 (562)
. ......++.+. +|.+++.|+..++.. .+.+..+ + ++|...+.+.. ........ ++...++
T Consensus 158 ---p---~~~~r~~~~~~-a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l--~~~~~vl 228 (403)
T 3ot5_A 158 ---P---EEMNRQLTGVM-ADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL--GDNRLIL 228 (403)
T ss_dssp ---T---HHHHHHHHHHH-CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC--TTCEEEE
T ss_pred ---c---HHHHHHHHHHh-cCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc--cCCCEEE
Confidence 0 01122233444 899999998887632 2223222 2 33432221111 11122222 2323445
Q ss_pred EEEeeccc-cCCHHHHHHHHHHHHHhcCCcEEEEEe-CCCC-HHHHHHHHHhcCCeeEEeCCCC--ChHHHHhhcCEEEE
Q 008544 277 YYIGRMVW-SKGYEELLGLLNIYHKELAGLEMDLYG-NGED-FDQIQRAAKKLKLVVRVYPGRD--HADPIFHDYKVFLN 351 (562)
Q Consensus 277 l~vGr~~~-~Kg~~~ll~a~~~l~~~~~~~~l~ivG-~g~~-~~~l~~~~~~l~l~~~~~~~~~--~~~~l~~~adv~v~ 351 (562)
++.||... .|+++.+++++.++.+++|++++++.+ .++. .+.+++... ...++.++++.. +...+|+.||++|.
T Consensus 229 v~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~vv~ 307 (403)
T 3ot5_A 229 MTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHLNPAVREKAMAILG-GHERIHLIEPLDAIDFHNFLRKSYLVFT 307 (403)
T ss_dssp ECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEEEEE
T ss_pred EEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCEEEE
Confidence 56666543 578999999999999888999998874 3321 233333221 123466666544 67799999999998
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEee-CCCC-ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHH
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCA-NHPS-NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTDAQTHQLSWESA 426 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t-~~~~-~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~~ar~~~sw~~~ 426 (562)
+| |...+|||++|+|+|++ +.++ .|.+..+ ++++++ |++++++++.++++|+.. +|++++ ..|.....
T Consensus 308 ~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~-~~~g~~~a 380 (403)
T 3ot5_A 308 DS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKESHDKMAQAA-NPYGDGFA 380 (403)
T ss_dssp CC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHHHSC-CTTCCSCH
T ss_pred CC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhc-CcccCCcH
Confidence 88 34449999999999999 5566 6777555 788775 999999999999998764 454332 23444444
Q ss_pred HHHHHHHHH
Q 008544 427 TERFLQVAE 435 (562)
Q Consensus 427 ~~~~~~~y~ 435 (562)
++++.+...
T Consensus 381 a~rI~~~l~ 389 (403)
T 3ot5_A 381 ANRILAAIK 389 (403)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 34
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.66 E-value=2e-15 Score=157.08 Aligned_cols=261 Identities=9% Similarity=0.010 Sum_probs=156.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHh---
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVH--- 225 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 225 (562)
...+.+++++.+||+||++..... +...++..+ |++.+.|+...... .........+...+.++.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~~~~~-----~~~aa~~~giP~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 171 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDVCALI-----GRVLGGLLDLPVVLHRWGVDPTAG------PFSDRAHELLDPVCRHHGLTG 171 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHH-----HHHHHHHTTCCEEEECCSCCCTTT------HHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHhcCCCEEEeCcchhH-----HHHHHHHhCCCEEEEecCCccccc------cccchHHHHHHHHHHHcCCCC
Confidence 345677888899999998753322 233445555 88877775532111 111223333333344331
Q ss_pred ---ccEEEEcChhhhccCCCccccccccCCCCcCcchhhhHHhhcC-CCCCccEEEEEeeccccCCH-HHHHHHHHHHHH
Q 008544 226 ---CHKVIRLSAATQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNG-NKAFTKGAYYIGRMVWSKGY-EELLGLLNIYHK 300 (562)
Q Consensus 226 ---ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~-~~~~~~~il~vGr~~~~Kg~-~~ll~a~~~l~~ 300 (562)
.+.++.......+...... +....+.+.......+.... .++...++++.|+....|+. ..+++++.+. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~ 246 (391)
T 3tsa_A 172 LPTPELILDPCPPSLQASDAPQ----GAPVQYVPYNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-T 246 (391)
T ss_dssp SCCCSEEEECSCGGGSCTTSCC----CEECCCCCCCCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-H
T ss_pred CCCCceEEEecChhhcCCCCCc----cCCeeeecCCCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-c
Confidence 2566666544433332111 01111110000000001111 12224456667888765544 7777777777 7
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS- 379 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~- 379 (562)
+.|+++++++|++++.+.++ .+..++++.+ +.+..+++..||++|.. +.+.+++|||++|+|+|+....+
T Consensus 247 ~~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~-~~~~~~ll~~ad~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~~ 317 (391)
T 3tsa_A 247 ELPGVEAVIAVPPEHRALLT----DLPDNARIAE-SVPLNLFLRTCELVICA----GGSGTAFTATRLGIPQLVLPQYFD 317 (391)
T ss_dssp TSTTEEEEEECCGGGGGGCT----TCCTTEEECC-SCCGGGTGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSTT
T ss_pred cCCCeEEEEEECCcchhhcc----cCCCCEEEec-cCCHHHHHhhCCEEEeC----CCHHHHHHHHHhCCCEEecCCccc
Confidence 78899999998876544332 2233455544 45677888999999954 45679999999999999965432
Q ss_pred ----ccccccCCceEeeC------CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHH
Q 008544 380 ----NDFFKQFPNCRTYD------GRNGFVEATLKALAEEPA--QPTDAQT---HQLSWESATERFLQVAE 435 (562)
Q Consensus 380 ----~e~v~~~~~g~~~~------d~~~la~~i~~ll~~~~~--~l~~~ar---~~~sw~~~~~~~~~~y~ 435 (562)
.+.+.+...|..++ |++++++++.++++|+.. +|++.++ ...+|+.+++.+.+..+
T Consensus 318 q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 318 QFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 56677788888864 589999999999999874 5555444 67889888887776543
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.64 E-value=3.9e-15 Score=155.36 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=95.4
Q ss_pred CccEEEEEeeccccC----------CHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHH
Q 008544 272 FTKGAYYIGRMVWSK----------GYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADP 341 (562)
Q Consensus 272 ~~~~il~vGr~~~~K----------g~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~ 341 (562)
...+++++|++...| .+..+++++.. . ++++++++++.+.+.++ .+..++++.+.. +..+
T Consensus 227 ~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~-~~~~ 296 (398)
T 4fzr_A 227 QPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPK----L-GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQF-PLSA 296 (398)
T ss_dssp SCEEECC----------------CCSHHHHHHHGGG----G-TCEEEECCCC------------CCTTEEEESCC-CHHH
T ss_pred CCEEEEEccCcccccccccccchHHHHHHHHHHHHh----C-CCEEEEEeCCcchhhhc----cCCCcEEEeCcC-CHHH
Confidence 355677889986554 45566665532 2 68899988776544443 334456666654 6889
Q ss_pred HHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC----C-ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC-
Q 008544 342 IFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP----S-NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA- 411 (562)
Q Consensus 342 l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~----~-~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~- 411 (562)
++..||++|.. +.+.+++|||++|+|+|+.... + .+.+.+...|+.++ |+++++++|.++++|+..
T Consensus 297 ll~~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 297 IMPACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp HGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred HHhhCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 99999999954 4578999999999999996543 3 66778888898874 788999999999999875
Q ss_pred -CccHHHH---hcCCHHHHHHHHH
Q 008544 412 -QPTDAQT---HQLSWESATERFL 431 (562)
Q Consensus 412 -~l~~~ar---~~~sw~~~~~~~~ 431 (562)
+|++.++ ...+|+.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 373 GNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 5555554 7788888887764
No 36
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.63 E-value=5.9e-15 Score=155.53 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=107.2
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEE-EEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEM-DLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l-~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..+++++|++. .++.+.+.+++..+. +.+++++ +++|.+++.+.++ .+..++.+.+..++. ++|+.+|++|.
T Consensus 233 ~~v~v~~Gs~~-~~~~~~~~~~~~~l~-~~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~ 305 (430)
T 2iyf_A 233 KVVLVSLGSAF-TKQPAFYRECVRAFG-NLPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVT 305 (430)
T ss_dssp EEEEEECTTTC-C-CHHHHHHHHHHHT-TCTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CeEEEEcCCCC-CCcHHHHHHHHHHHh-cCCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEE
Confidence 45777889987 556555555554443 2257887 5678876554442 233356666666555 89999999998
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
.+ ..++++|||++|+|+|+++.++ .+.+.+...|+.++ |+++++++|.++++|+.. ++++.++
T Consensus 306 ~~----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 381 (430)
T 2iyf_A 306 HA----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEM 381 (430)
T ss_dssp CC----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CC----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 65 2479999999999999997754 45567777888874 889999999999998764 4555444
Q ss_pred -hcCCHHHHHHHHHHHHHhc
Q 008544 419 -HQLSWESATERFLQVAELV 437 (562)
Q Consensus 419 -~~~sw~~~~~~~~~~y~~~ 437 (562)
...+++.+++.+.+.++..
T Consensus 382 ~~~~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 382 AQEGGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHCHHHHHHHHHHTTSCC-
T ss_pred HhcCcHHHHHHHHHHHhhcc
Confidence 5678888888887776544
No 37
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.55 E-value=2.2e-14 Score=149.60 Aligned_cols=147 Identities=9% Similarity=0.030 Sum_probs=103.8
Q ss_pred ccEEEEEeecccc-CCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWS-KGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~-Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..+++++|++... ++.+.+.++++.+.+. ++++++++++++.+.++ .+..++.+.+.. +..+++..||++|.
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~-~~~~ll~~ad~~v~ 305 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWT-PLHTLLRTCTAVVH 305 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSC-CHHHHHTTCSEEEE
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccC-CHHHHHhhCCEEEE
Confidence 4566778998654 3555555555555433 78999998876644333 233356666655 88899999999995
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEee----CCCC-c--cccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCA----NHPS-N--DFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t----~~~~-~--e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar 418 (562)
. +.+.+++|||++|+|+|+. +... . +.+.+...|+.++ ++++++ ++++|+.. +|++.++
T Consensus 306 ~----~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~ 377 (398)
T 3oti_A 306 H----GGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVRE 377 (398)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHH
Confidence 4 4567999999999999995 3344 6 8888888998874 444454 78887764 4555444
Q ss_pred ---hcCCHHHHHHHHHHHH
Q 008544 419 ---HQLSWESATERFLQVA 434 (562)
Q Consensus 419 ---~~~sw~~~~~~~~~~y 434 (562)
...+|+.+++.+.++.
T Consensus 378 ~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 378 EMVALPTPAETVRRIVERI 396 (398)
T ss_dssp HHHTSCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 7789999998887764
No 38
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.50 E-value=7.3e-13 Score=137.78 Aligned_cols=152 Identities=13% Similarity=0.020 Sum_probs=102.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..++++.|+....+ .+.+.++++.+ .+.+ +++++ +|.+.+.+.+++ +..++++.+..++. +++..||++|.
T Consensus 232 ~~v~v~~G~~~~~~-~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~~~~~----~~~~v~~~~~~~~~-~ll~~ad~~v~ 303 (402)
T 3ia7_A 232 PVLLVSLGNQFNEH-PEFFRACAQAF-ADTP-WHVVMAIGGFLDPAVLGP----LPPNVEAHQWIPFH-SVLAHARACLT 303 (402)
T ss_dssp CEEEEECCSCSSCC-HHHHHHHHHHH-TTSS-CEEEEECCTTSCGGGGCS----CCTTEEEESCCCHH-HHHTTEEEEEE
T ss_pred CEEEEECCCCCcch-HHHHHHHHHHH-hcCC-cEEEEEeCCcCChhhhCC----CCCcEEEecCCCHH-HHHhhCCEEEE
Confidence 45667888876554 23333333333 2333 66655 566545443332 33456666655555 99999999997
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCC-C----C-ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH-
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANH-P----S-NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT- 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~-~----~-~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar- 418 (562)
.+ ...+++|||++|+|+|+... . . .+.+.+...|..++ |++++++++.++++|+.. ++++.++
T Consensus 304 ~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~ 379 (402)
T 3ia7_A 304 HG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRD 379 (402)
T ss_dssp CC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 65 24788999999999997654 2 2 66777778888764 899999999999998764 4444333
Q ss_pred --hcCCHHHHHHHHHHHHHh
Q 008544 419 --HQLSWESATERFLQVAEL 436 (562)
Q Consensus 419 --~~~sw~~~~~~~~~~y~~ 436 (562)
...+++.+++.+.+.++.
T Consensus 380 ~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 380 ILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHTSCHHHHHHHHHHHHHHH
T ss_pred HhhCChHHHHHHHHHHHHhh
Confidence 667888999888887754
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.48 E-value=1.6e-12 Score=136.02 Aligned_cols=151 Identities=11% Similarity=0.012 Sum_probs=99.2
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..++++.|+.....+ +.+.++++.+ .+.+ +++++ +|.+.+.+.++ .+..++++.+..++ .+++..||++|.
T Consensus 248 ~~v~v~~Gs~~~~~~-~~~~~~~~al-~~~~-~~~v~~~g~~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad~~v~ 319 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRP-GFFRDCARAF-DGQP-WHVVMTLGGQVDPAALG----DLPPNVEAHRWVPH-VKVLEQATVCVT 319 (415)
T ss_dssp CEEEEECTTTSCCCH-HHHHHHHHHH-TTSS-CEEEEECTTTSCGGGGC----CCCTTEEEESCCCH-HHHHHHEEEEEE
T ss_pred CEEEEECCCCCCChH-HHHHHHHHHH-hcCC-cEEEEEeCCCCChHHhc----CCCCcEEEEecCCH-HHHHhhCCEEEE
Confidence 455667787754432 2222223222 3343 77777 56655544433 23335666655544 499999999997
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
.+ -..+++|||++|+|+|+....+ .+.+.+...|..++ ++++++++|.++++|+.. .+.+.++
T Consensus 320 ~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 395 (415)
T 3rsc_A 320 HG----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHV 395 (415)
T ss_dssp SC----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CC----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 64 2468999999999999964432 56667777777763 889999999999998764 3433333
Q ss_pred -hcCCHHHHHHHHHHHHH
Q 008544 419 -HQLSWESATERFLQVAE 435 (562)
Q Consensus 419 -~~~sw~~~~~~~~~~y~ 435 (562)
....++.+++.+.+.++
T Consensus 396 ~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 396 RRAGGAARAADAVEAYLA 413 (415)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhh
Confidence 66778888887777664
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.47 E-value=1.3e-12 Score=135.38 Aligned_cols=230 Identities=8% Similarity=-0.048 Sum_probs=133.3
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHh---
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVH--- 225 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 225 (562)
...+.+.+++.+||+||++..... +...++.++ |.+.+.++.... . .. ...+...+++...+..
T Consensus 96 ~~~l~~~l~~~~pD~Vi~~~~~~~-----~~~~a~~~giP~v~~~~~~~~~--~--~~---~~~~~~~~~~~~~~~g~~~ 163 (384)
T 2p6p_A 96 LPRMLDFSRAWRPDLIVGGTMSYV-----APLLALHLGVPHARQTWDAVDA--D--GI---HPGADAELRPELSELGLER 163 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCTH-----HHHHHHHHTCCEEEECCSSCCC--T--TT---HHHHHHHTHHHHHHTTCSS
T ss_pred HHHHHHHHhccCCcEEEECcchhh-----HHHHHHhcCCCEEEeccCCccc--c--hh---hHHHHHHHHHHHHHcCCCC
Confidence 345667777889999998764322 223455555 887776643210 0 00 0112222222222321
Q ss_pred ---ccEEEEcChhhhccCCCccccccccCCCCcC-cchhhhHHhhcCCCCCccEEEEEeecccc-------CCHHHHHHH
Q 008544 226 ---CHKVIRLSAATQEYPNSIVCNVHGVNPKFLE-IGEKKMEQQQNGNKAFTKGAYYIGRMVWS-------KGYEELLGL 294 (562)
Q Consensus 226 ---ad~vi~~S~~~~~~~~~~~~~v~GVd~~~~~-~~~~~~~~~~~~~~~~~~~il~vGr~~~~-------Kg~~~ll~a 294 (562)
++.++..+....+.+.... ..+ +....+. +....... ...++...+++++|++... +.+..++++
T Consensus 164 ~~~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l--~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~a 239 (384)
T 2p6p_A 164 LPAPDLFIDICPPSLRPANAAP-ARM-MRHVATSRQCPLEPWM--YTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKD 239 (384)
T ss_dssp CCCCSEEEECSCGGGSCTTSCC-CEE-CCCCCCCCCCBCCHHH--HCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHH
T ss_pred CCCCCeEEEECCHHHCCCCCCC-CCc-eEecCCCCCCCCCchh--hcCCCCCEEEEECCCCCccccccccHHHHHHHHHH
Confidence 4677777655443322110 000 1000011 00000000 0112224577888998765 567778887
Q ss_pred HHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEe
Q 008544 295 LNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 295 ~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
+..+ ++++++++++++.+.++ .+..++.+ ++.+..++|..+|+||..+ .+.+++|||++|+|+|+
T Consensus 240 l~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~--~~~~~~~~l~~~d~~v~~~----G~~t~~Ea~~~G~P~v~ 304 (384)
T 2p6p_A 240 LVRW-----DVELIVAAPDTVAEALR----AEVPQARV--GWTPLDVVAPTCDLLVHHA----GGVSTLTGLSAGVPQLL 304 (384)
T ss_dssp HHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE--ECCCHHHHGGGCSEEEECS----CTTHHHHHHHTTCCEEE
T ss_pred HhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE--cCCCHHHHHhhCCEEEeCC----cHHHHHHHHHhCCCEEE
Confidence 7432 68888876543333333 23334566 4446789999999999863 45689999999999999
Q ss_pred eCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCC
Q 008544 375 ANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 410 (562)
Q Consensus 375 t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~ 410 (562)
.+..+ .+.+.+...|+.++ ++++++++|.++++|+.
T Consensus 305 ~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 349 (384)
T 2p6p_A 305 IPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKDT 349 (384)
T ss_dssp CCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCHH
T ss_pred ccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCHH
Confidence 97743 45566777788764 78999999999998754
No 41
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.32 E-value=5.2e-11 Score=125.87 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=104.0
Q ss_pred ccEEEEEeeccc-----cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcC
Q 008544 273 TKGAYYIGRMVW-----SKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~-----~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~ad 347 (562)
..++++.|++.. .|.+..+++++..+ ++++++.+.+++.+.++ .+..++.+.+..+ ..++|..||
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~-~~~ll~~ad 337 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVP-MHALLPTCA 337 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCC-HHHHGGGCS
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCC-HHHHHhhCC
Confidence 346778898865 37888888888432 68888877655433221 2233455555444 478999999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHH
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDA 416 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ 416 (562)
++|.. +.+.+++|||++|+|+|+....+ .+.+.+...|+.++ ++++++++|.++++|+.. ++.+.
T Consensus 338 ~~V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 338 ATVHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EEEEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99974 44689999999999999997753 55677777888764 889999999999998764 44443
Q ss_pred HH---hcCCHHHHHHHHHHHHH
Q 008544 417 QT---HQLSWESATERFLQVAE 435 (562)
Q Consensus 417 ar---~~~sw~~~~~~~~~~y~ 435 (562)
++ ....++.+++.+.+..+
T Consensus 414 ~~~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 33 66788888888877764
No 42
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.31 E-value=1.2e-11 Score=128.10 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=147.7
Q ss_pred HHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhhhhchHHHHHHHHHHHH-HHHHHhcc
Q 008544 150 VGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKREKNDRLQAFLLEFVNS-WLARVHCH 227 (562)
Q Consensus 150 ~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad 227 (562)
+..+.+++++.+||+|++++.....+. ...+.+.+ |++ .++.....+... +....++ ++.+. +|
T Consensus 83 ~~~l~~~l~~~kPD~Vlv~gd~~~~~a---alaA~~~~IPv~-h~eaglrs~~~~---------~pee~nR~~~~~~-a~ 148 (385)
T 4hwg_A 83 IEKVDEVLEKEKPDAVLFYGDTNSCLS---AIAAKRRKIPIF-HMEAGNRCFDQR---------VPEEINRKIIDHI-SD 148 (385)
T ss_dssp HHHHHHHHHHHCCSEEEEESCSGGGGG---HHHHHHTTCCEE-EESCCCCCSCTT---------STHHHHHHHHHHH-CS
T ss_pred HHHHHHHHHhcCCcEEEEECCchHHHH---HHHHHHhCCCEE-EEeCCCcccccc---------CcHHHHHHHHHhh-hc
Confidence 566888899999999999987655332 23444445 654 444332111100 0111122 23333 89
Q ss_pred EEEEcChhhhccC------CCccccc-c-ccCCCCcC--cchhhhHHhhcCCCCCccEEEEEeecc---ccCCHHHHHHH
Q 008544 228 KVIRLSAATQEYP------NSIVCNV-H-GVNPKFLE--IGEKKMEQQQNGNKAFTKGAYYIGRMV---WSKGYEELLGL 294 (562)
Q Consensus 228 ~vi~~S~~~~~~~------~~~~~~v-~-GVd~~~~~--~~~~~~~~~~~~~~~~~~~il~vGr~~---~~Kg~~~ll~a 294 (562)
.+++.++..++.. .+.+..+ + ++|...+. ...........++++...++++.+|.. ..|+++.++++
T Consensus 149 ~~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~a 228 (385)
T 4hwg_A 149 VNITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNS 228 (385)
T ss_dssp EEEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHH
Confidence 9999998877632 2222222 1 23321111 011222344566655444555566543 34788999999
Q ss_pred HHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhc-C-----CeeEEeCC--CCChHHHHhhcCEEEEccCCCCCcHHHHHHH
Q 008544 295 LNIYHKELAGLEMDLYGNGEDFDQIQRAAKKL-K-----LVVRVYPG--RDHADPIFHDYKVFLNPSTTDVVCTATAEAL 366 (562)
Q Consensus 295 ~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l-~-----l~~~~~~~--~~~~~~l~~~adv~v~pS~~E~~~~~~lEAm 366 (562)
+.++.++. ++.+++... + .+++.+++. + .++.++.+ +.+...+|+.||+++.+| |..+.||+
T Consensus 229 l~~l~~~~-~~~vv~p~~-p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~ 298 (385)
T 4hwg_A 229 LQMLIKEY-NFLIIFSTH-P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEAS 298 (385)
T ss_dssp HHHHHHHH-CCEEEEEEC-H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHH
T ss_pred HHHHHhcC-CeEEEEECC-h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHH
Confidence 99998766 787777553 2 345555544 2 23555544 335668999999999777 44679999
Q ss_pred HcCCcEEeeCCCC--ccccccCCceEeeC-CHHHHHHHHHHHHhCCCC--CccH
Q 008544 367 AMGKIVVCANHPS--NDFFKQFPNCRTYD-GRNGFVEATLKALAEEPA--QPTD 415 (562)
Q Consensus 367 a~G~PVI~t~~~~--~e~v~~~~~g~~~~-d~~~la~~i~~ll~~~~~--~l~~ 415 (562)
++|+|+|+.+... .|.+..| ++.+++ |++++++++.++++|+.. .|++
T Consensus 299 alG~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~~~~~m~~ 351 (385)
T 4hwg_A 299 ILNLPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHDNNKRTQG 351 (385)
T ss_dssp HTTCCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCBTTBCCSC
T ss_pred HcCCCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChHHHHHhhc
Confidence 9999999986643 6777665 566664 999999999999999875 5644
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.21 E-value=2e-09 Score=112.94 Aligned_cols=150 Identities=12% Similarity=0.034 Sum_probs=95.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEE-EEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD-LYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~-ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..++++.|+.. .+..+.+.+++..+.+ .+++++ ++|.+.+.+.++ .+..++.+.+...+. ++|..+|++|.
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~ 327 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFIT 327 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEE
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEE
Confidence 45666778876 3444444444444432 467774 467765443332 233346666655444 89999999986
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
. +...+++|||++|+|+|+....+ .+.+.+...|+.++ ++++++++|.++++|+.. ++.+.++
T Consensus 328 ~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 403 (424)
T 2iya_A 328 H----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEI 403 (424)
T ss_dssp C----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred C----CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4 33589999999999999997753 45566667777764 899999999999998753 2222222
Q ss_pred -hcCCHHHHHHHHHHHH
Q 008544 419 -HQLSWESATERFLQVA 434 (562)
Q Consensus 419 -~~~sw~~~~~~~~~~y 434 (562)
.....+.+++.+.+..
T Consensus 404 ~~~~~~~~~~~~i~~~~ 420 (424)
T 2iya_A 404 REAGGARAAADILEGIL 420 (424)
T ss_dssp HTSCHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 3344555555555443
No 44
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.17 E-value=5.6e-11 Score=123.49 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=80.2
Q ss_pred ccEEEEEeeccccCC-HHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKG-YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg-~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..+++..|++...++ .+.+.+++..+.+ .+.++++.+.+.+.+.. ..+.-++.+ .++.+..+++..+|+||.
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~----~~~~~~v~~-~~~~p~~~lL~~~~~~v~ 310 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLALL----GELPANVRV-VEWIPLGALLETCDAIIH 310 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCCCC----CCCCTTEEE-ECCCCHHHHHTTCSEEEE
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccccc----ccCCCCEEE-EeecCHHHHhhhhhheec
Confidence 345556677655443 3444444444433 35777776654432211 112223333 445567899999999984
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
- +...+++|||++|+|+|+....+ .+.+.+...|...++.+..+++|.++++|+.
T Consensus 311 h----~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d~~ 370 (400)
T 4amg_A 311 H----GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDDAG 370 (400)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHCHH
T ss_pred c----CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcCHH
Confidence 3 45678999999999999976543 4556666778877777778889999999865
No 45
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.14 E-value=2.4e-09 Score=111.73 Aligned_cols=147 Identities=10% Similarity=-0.014 Sum_probs=96.2
Q ss_pred ccEEEEEeecc-ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMV-WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~-~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..++++.|++. ..+.+..+++++..+ ++++++.+++.+.+.. ....++.+.+ +.+..+++..+|++|.
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~-~~~~~~ll~~~d~~v~ 290 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVG-EVNHQVLFGRVAAVVH 290 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEES-SCCHHHHGGGSSEEEE
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEec-CCCHHHHHhhCcEEEE
Confidence 45667778887 566677777777543 5677776543322111 1233455554 4556899999999996
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQT-- 418 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar-- 418 (562)
.+ -..++.|||++|+|+|+....+ .+.+.+...|...+ +++++.+++.++++ +.. .+.+.+.
T Consensus 291 ~g----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~ 365 (404)
T 3h4t_A 291 HG----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTI 365 (404)
T ss_dssp CC----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTC
T ss_pred CC----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 54 3478999999999999986654 34456666777653 89999999999997 432 3333333
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008544 419 HQLSWESATERFLQVAE 435 (562)
Q Consensus 419 ~~~sw~~~~~~~~~~y~ 435 (562)
..-.++.+++.+++.++
T Consensus 366 ~~~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 366 RTDGTTVAAKLLLEAIS 382 (404)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 22456666666666654
No 46
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.97 E-value=7.1e-10 Score=118.95 Aligned_cols=263 Identities=10% Similarity=-0.043 Sum_probs=150.8
Q ss_pred HhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEE
Q 008544 151 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVI 230 (562)
Q Consensus 151 ~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 230 (562)
..+.+.|++.++||.+--+......- ......+..|+-.++-+ |+. ..+.. . .|.+|
T Consensus 339 ~~ia~~Ir~d~IDILVdL~g~t~~~~--i~~aa~RpAPVQvs~lG-yp~---TTGl~---------------~--iDY~i 395 (631)
T 3q3e_A 339 EFIRSVCESNGAAIFYMPSIGMDMTT--IFASNTRLAPIQAIALG-HPA---TTHSD---------------F--IEYVI 395 (631)
T ss_dssp HHHHHHHHHHTCSEEEESCCSSSHHH--HHHTTSCCSSEEEEECS-SCS---CCCCT---------------T--CCEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCCchh--HHHHhCCCchheEeccC-CCc---ccCcc---------------c--CCEEE
Confidence 34778888999999887544332111 01112343477666653 221 11111 1 37766
Q ss_pred EcChh--hhccCCCccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEE
Q 008544 231 RLSAA--TQEYPNSIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMD 308 (562)
Q Consensus 231 ~~S~~--~~~~~~~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ 308 (562)
+-... ..+...+++....+.- -.+.|......+...+++.+.-.++|.+--...|..+.+++++.++.++.|+..++
T Consensus 396 ~D~~~~~~~~~ysEklirLP~~~-~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~ 474 (631)
T 3q3e_A 396 VEDDYVGSEECFSETLLRLPKDA-LPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHF 474 (631)
T ss_dssp EEGGGCCCGGGCSSEEEEECTTS-SCCCCCTTCCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEE
T ss_pred eCCCCCCcccCceeeEEECCCCc-cccCCcccCCccccccCCcCCCeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 64311 1223333333332110 01111111111233455543123333333346899999999999999999997765
Q ss_pred E--EeCCCC-HHHHHHHHHhcCCe--eEEeCCCCChH--HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-c
Q 008544 309 L--YGNGED-FDQIQRAAKKLKLV--VRVYPGRDHAD--PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-N 380 (562)
Q Consensus 309 i--vG~g~~-~~~l~~~~~~l~l~--~~~~~~~~~~~--~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~ 380 (562)
+ +|.++. .+.+.+.+.+.|+. +.|.+.....+ +.|+.+|+|+.|+.+.+ |++.+|||+||+|||+...++ .
T Consensus 475 l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~a 553 (631)
T 3q3e_A 475 HFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVH 553 (631)
T ss_dssp EEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHH
T ss_pred EEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHH
Confidence 3 564322 23333344455553 44555444333 77899999999987755 999999999999999986654 2
Q ss_pred ccc------ccCCceE-eeCCHHHHHHHHHHHHhCCCC--CccHHHHhcC----CHHHHHHHHHHHHHhcC
Q 008544 381 DFF------KQFPNCR-TYDGRNGFVEATLKALAEEPA--QPTDAQTHQL----SWESATERFLQVAELVG 438 (562)
Q Consensus 381 e~v------~~~~~g~-~~~d~~~la~~i~~ll~~~~~--~l~~~ar~~~----sw~~~~~~~~~~y~~~~ 438 (562)
.-+ .-|-..+ +.+|.+++++...++.+|++. .++++.++.. -|+...++|.+.|+...
T Consensus 554 sRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~ 624 (631)
T 3q3e_A 554 EHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKL 624 (631)
T ss_dssp HHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHH
T ss_pred HHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHH
Confidence 222 1344453 678999999999999999986 6777666221 12244556666666544
No 47
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.77 E-value=2.2e-07 Score=97.04 Aligned_cols=147 Identities=10% Similarity=-0.017 Sum_probs=93.1
Q ss_pred ccEEEEEeec-cccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEE
Q 008544 273 TKGAYYIGRM-VWSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFL 350 (562)
Q Consensus 273 ~~~il~vGr~-~~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v 350 (562)
..++++.|++ ...+..+.++++++.+ +.+++++ |.++.. . ..+..++.+.+.. +..+++..+|+||
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~-~~~~~l~~~d~~v 306 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADLV--L----PDDGADCFAIGEV-NHQVLFGRVAAVI 306 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTCC--C----SSCGGGEEECSSC-CHHHHGGGSSEEE
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCccc--c----cCCCCCEEEeCcC-ChHHHHhhCCEEE
Confidence 4567788888 4777778888887543 3456555 654322 1 1122234554444 4568899999999
Q ss_pred EccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCCC--CccHHHHh
Q 008544 351 NPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEPA--QPTDAQTH 419 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~~--~l~~~ar~ 419 (562)
.. +...+++|||++|+|+|+....+ .+.+.+...|..++ +.++++++|.++ +|+.. ++.+.+ +
T Consensus 307 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~-~ 380 (415)
T 1iir_A 307 HH----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVA-G 380 (415)
T ss_dssp EC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHH-H
T ss_pred eC----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHH-H
Confidence 75 33579999999999999997643 45566667787763 889999999999 76542 222222 3
Q ss_pred cCCHHHHHHHHHHHHHhc
Q 008544 420 QLSWESATERFLQVAELV 437 (562)
Q Consensus 420 ~~sw~~~~~~~~~~y~~~ 437 (562)
.+......++..+..+..
T Consensus 381 ~~~~~~~~~~~~~~i~~~ 398 (415)
T 1iir_A 381 TIRTDGAAVAARLLLDAV 398 (415)
T ss_dssp HSCSCHHHHHHHHHHHHH
T ss_pred HHhhcChHHHHHHHHHHH
Confidence 333444555555544443
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.75 E-value=2.5e-07 Score=96.65 Aligned_cols=121 Identities=8% Similarity=-0.050 Sum_probs=82.5
Q ss_pred ccEEEEEeecc---ccCCHHHHHHHHHHHHHhcCCcEEEEE-eCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCE
Q 008544 273 TKGAYYIGRMV---WSKGYEELLGLLNIYHKELAGLEMDLY-GNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 348 (562)
Q Consensus 273 ~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv 348 (562)
..++++.|++. ..+.++.+++++..+ +.+++++ |.++.. . ..+..++.+.+.. +..+++..+|+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~-~~~~ll~~~d~ 305 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTELV--L----PDDRDDCFAIDEV-NFQALFRRVAA 305 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTCC--C----SCCCTTEEEESSC-CHHHHGGGSSE
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCcccc--c----cCCCCCEEEeccC-ChHHHhccCCE
Confidence 45666778874 455666677776443 4566665 654321 1 1223345555444 57789999999
Q ss_pred EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCC
Q 008544 349 FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 410 (562)
Q Consensus 349 ~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~ 410 (562)
+|.- +...+++|||++|+|+|+....+ .+.+.+...|..++ +.++++++|.++ +|+.
T Consensus 306 ~v~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~ 371 (416)
T 1rrv_A 306 VIHH----GSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPE 371 (416)
T ss_dssp EEEC----CCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHH
T ss_pred EEec----CChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHH
Confidence 9973 44679999999999999986643 44566667777653 889999999999 7654
No 49
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.75 E-value=7.8e-08 Score=105.32 Aligned_cols=168 Identities=13% Similarity=0.030 Sum_probs=116.5
Q ss_pred CCCccEEEEEeeccccCCHHH-HHHHHHHHHH--hc-----CCcEEEEEeCCCC--HHH------HHHHHH------hcC
Q 008544 270 KAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHK--EL-----AGLEMDLYGNGED--FDQ------IQRAAK------KLK 327 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~ivG~g~~--~~~------l~~~~~------~l~ 327 (562)
.++.+.++++.|+..+||.++ ++..+.++.+ .. .++++++.|.+.. ... +.+.++ +.+
T Consensus 523 dpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~ 602 (796)
T 1l5w_A 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVG 602 (796)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTG
T ss_pred CCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccC
Confidence 456889999999999999999 8888887754 12 3589999998753 222 444444 233
Q ss_pred C--eeEEeCCCCChH--HHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC-CHHH
Q 008544 328 L--VVRVYPGRDHAD--PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-GRNG 397 (562)
Q Consensus 328 l--~~~~~~~~~~~~--~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~-d~~~ 397 (562)
. ++.|+.+++..- .++..||++++||+ .|..|+.-+=||..|.+.|.+--|. .|+.+. ..|||++. ++++
T Consensus 603 ~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~e 682 (796)
T 1l5w_A 603 DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQ 682 (796)
T ss_dssp GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHH
Confidence 3 455666654333 89999999999999 9999999999999999999886665 555433 47999986 6666
Q ss_pred HHHHHH-------HHHhCCCC-CccHHHH-hcCCHHHHHHHHHHHHHhcC
Q 008544 398 FVEATL-------KALAEEPA-QPTDAQT-HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 398 la~~i~-------~ll~~~~~-~l~~~ar-~~~sw~~~~~~~~~~y~~~~ 438 (562)
+.+.-. -.-.++.. ++-.+.. ..|||+.. ++|.++|+...
T Consensus 683 v~~l~~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~ 731 (796)
T 1l5w_A 683 VKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDK-HAFDQMLHSIG 731 (796)
T ss_dssp HHHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTTTTCT-TTTHHHHHHTS
T ss_pred HHHHHHcccCHHHHhhcCHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHh
Confidence 653221 11122211 2222222 78899875 77888888765
No 50
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=90.91 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=89.5
Q ss_pred ccEEEEEeecc---ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHH--hhcC
Q 008544 273 TKGAYYIGRMV---WSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF--HDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~---~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~--~~ad 347 (562)
..+++++|++. +.|.+..+++++.. . +.++++++++...+ .+..++++.+..++ .+++ ..||
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~----~-~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~-~~~l~~~~ad 88 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQ----I-PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQ-NDLLGHPKTR 88 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTT----S-SSEEEEECCSSCCT-------TCCTTEEEESSCCH-HHHHTSTTEE
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHh----C-CCeEEEEECCcCcc-------cCCCcEEEecCCCH-HHHhcCCCcC
Confidence 45778889885 56677777777732 2 47888877665322 23334666655544 6777 8999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccCCceEeeC----CHHHHHHHHHHHHhCCC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----GRNGFVEATLKALAEEP 410 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~~~g~~~~----d~~~la~~i~~ll~~~~ 410 (562)
++|.. +.+.+++|||++|+|+|+....+ .+.+.+...|+.++ ++++++++|.++++|+.
T Consensus 89 ~~I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 156 (170)
T 2o6l_A 89 AFITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPS 156 (170)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHH
T ss_pred EEEEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHH
Confidence 99974 44699999999999999998753 56677778888875 88999999999998754
No 51
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.72 E-value=2.9e-07 Score=100.89 Aligned_cols=169 Identities=13% Similarity=0.029 Sum_probs=116.9
Q ss_pred CCCCccEEEEEeeccccCCHHH-HHHHHHHHHH--hc-----CCcEEEEEeCCCC--HHH------HHHHHH------hc
Q 008544 269 NKAFTKGAYYIGRMVWSKGYEE-LLGLLNIYHK--EL-----AGLEMDLYGNGED--FDQ------IQRAAK------KL 326 (562)
Q Consensus 269 ~~~~~~~il~vGr~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~ivG~g~~--~~~------l~~~~~------~l 326 (562)
..++.+.++++.|+..+||.++ ++..+.++.+ +. .++++++.|.+.. ... +.+.++ +.
T Consensus 512 vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~ 591 (796)
T 2c4m_A 512 IDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEV 591 (796)
T ss_dssp CCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred CCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhcccccc
Confidence 3456889999999999999999 8888887764 33 3589999998753 222 444444 34
Q ss_pred CC--eeEEeCCCCChH--HHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceEeeC----
Q 008544 327 KL--VVRVYPGRDHAD--PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD---- 393 (562)
Q Consensus 327 ~l--~~~~~~~~~~~~--~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~~~~---- 393 (562)
+. ++.|+.+++..- .++..||++++||+ .|..|+.-+=||..|.+.|.+--|. .|+.+. ..|||++.
T Consensus 592 ~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ 671 (796)
T 2c4m_A 592 SPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVE 671 (796)
T ss_dssp TTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTT
T ss_pred CCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchh
Confidence 43 566666655333 89999999999999 9999999999999999999886665 454433 47999985
Q ss_pred CHHHHHHH---HHHHHhCCCC-CccHHHH-hcCCHHHHHHHHHHHHHhcC
Q 008544 394 GRNGFVEA---TLKALAEEPA-QPTDAQT-HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 394 d~~~la~~---i~~ll~~~~~-~l~~~ar-~~~sw~~~~~~~~~~y~~~~ 438 (562)
++.++... ..-.-.++.. ++-.+.. ..|||+.. ++|.++|+...
T Consensus 672 ev~~l~~~y~a~~~y~~~~~~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L~ 720 (796)
T 2c4m_A 672 ELPALRESYKPYELYETVPGLKRALDALDNGTLNDNNS-GLFYDLKHSLI 720 (796)
T ss_dssp THHHHHHTCCHHHHHHHSTTHHHHHHTTTSSSSCCTTC-CHHHHHHHHHH
T ss_pred hHHHHHHhhChHHHhhcCHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHH
Confidence 44444432 2222233321 1111112 68999876 77888888764
No 52
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.37 E-value=8.4e-06 Score=80.05 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=104.8
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCcHHHHhhhhchHHHHHHHHHHHHHHHHHhccEEEE
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNYLEYVKREKNDRLQAFLLEFVNSWLARVHCHKVIR 231 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~ 231 (562)
++.+.+++.++|++++-+......+ ...++......+..+-+.. . ...||.+|-
T Consensus 60 ~~~~~l~~~~~d~lIvD~Y~~~~~~--~~~lk~~~~~~i~~iDD~~-~-----------------------~~~~Dllin 113 (282)
T 3hbm_A 60 ELINLIKEEKFELLIIDHYGISVDD--EKLIKLETGVKILSFDDEI-K-----------------------PHHCDILLN 113 (282)
T ss_dssp HHHHHHHHHTCSEEEEECTTCCHHH--HHHHHHHHCCEEEEECSSC-C-----------------------CCCCSEEEE
T ss_pred HHHHHHHhCCCCEEEEECCCCCHHH--HHHHHHhcCcEEEEEecCC-C-----------------------cccCCEEEe
Confidence 3556666778999988766444222 1223333344444443221 1 012799998
Q ss_pred cChhhh--ccCC---CccccccccCCCCcCcchhhhHHhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcE
Q 008544 232 LSAATQ--EYPN---SIVCNVHGVNPKFLEIGEKKMEQQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLE 306 (562)
Q Consensus 232 ~S~~~~--~~~~---~~~~~v~GVd~~~~~~~~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~ 306 (562)
.+.... .+.. ......-|.+...+.+.-.. ..+........++++.|......-...+++++. + ... -
T Consensus 114 ~~~~~~~~~Y~~~~p~~~~~l~G~~Y~~lR~eF~~--~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~---~-~~~-i 186 (282)
T 3hbm_A 114 VNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQ--EAKENRKKKYDFFICMGGTDIKNLSLQIASELP---K-TKI-I 186 (282)
T ss_dssp CSTTCCGGGGTTTCC-CCEEEESGGGCCCCHHHHH--HTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSC---T-TSC-E
T ss_pred CCcccchhhccccCCCCCeEeeCCcccccCHHHHH--hhhhccccCCeEEEEECCCchhhHHHHHHHHhh---c-CCC-E
Confidence 763322 2221 11111224433333221111 111111122345667887655443344555542 2 223 3
Q ss_pred EEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 307 MDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 307 l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.++.|.+.. .+++++.+++.+ ++.+++..+++.++|+.||+.|.+. |+++.|++++|+|.|.-..
T Consensus 187 ~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~g-----G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 187 SIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIISA-----SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp EEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEES-----SHHHHHHHHTTCCEEEECC
T ss_pred EEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEECC-----cHHHHHHHHcCCCEEEEeC
Confidence 455677654 677887776544 6888888999999999999999842 5899999999999988654
No 53
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.17 E-value=7.9e-06 Score=89.95 Aligned_cols=167 Identities=10% Similarity=0.025 Sum_probs=113.7
Q ss_pred CCCccEEEEEeeccccCCHHHH-HHHHHHHHH--hcC-----CcEEEEEeCCCC--HHH------HHHHHHhc------C
Q 008544 270 KAFTKGAYYIGRMVWSKGYEEL-LGLLNIYHK--ELA-----GLEMDLYGNGED--FDQ------IQRAAKKL------K 327 (562)
Q Consensus 270 ~~~~~~il~vGr~~~~Kg~~~l-l~a~~~l~~--~~~-----~~~l~ivG~g~~--~~~------l~~~~~~l------~ 327 (562)
.++.+.++++.|+..+|+.+++ +..+.++.+ +.| +.++++.|.+.. ... +.+.++.. +
T Consensus 547 dpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~ 626 (824)
T 2gj4_A 547 NPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVG 626 (824)
T ss_dssp CTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTG
T ss_pred CCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccC
Confidence 4568899999999999999997 788877742 333 579999998753 222 44444433 2
Q ss_pred C--eeEEeCCCCChH--HHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-ccccc--cCCceEeeC-CHHH
Q 008544 328 L--VVRVYPGRDHAD--PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD-GRNG 397 (562)
Q Consensus 328 l--~~~~~~~~~~~~--~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~--~~~~g~~~~-d~~~ 397 (562)
. ++.|+.+++..- .++..||++++||+ .|..|+.-+=||..|.+.|++--|. .|+.+ ...|||++. .+++
T Consensus 627 ~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~e 706 (824)
T 2gj4_A 627 DRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVED 706 (824)
T ss_dssp GGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHH
T ss_pred CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHH
Confidence 2 456666655333 89999999999999 9999999999999999999986665 45543 457899986 5666
Q ss_pred HHHHHH-------HHHhCCCC--CccHHHH-hcCCHHHHHHHHHHHHHhcC
Q 008544 398 FVEATL-------KALAEEPA--QPTDAQT-HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 398 la~~i~-------~ll~~~~~--~l~~~ar-~~~sw~~~~~~~~~~y~~~~ 438 (562)
+ .++. .+.+.++. ++-.+.. ..|+|+.. ++|.++|+...
T Consensus 707 v-~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~-~~y~~ly~~l~ 755 (824)
T 2gj4_A 707 V-DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQP-DLFKDIVNMLM 755 (824)
T ss_dssp H-HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTST-TTTHHHHHHHH
T ss_pred H-HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHH
Confidence 5 4432 11111111 1111122 67888776 66777776553
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.07 E-value=2.6e-05 Score=86.95 Aligned_cols=171 Identities=12% Similarity=-0.071 Sum_probs=122.9
Q ss_pred HhhcCCCCCccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCCCh
Q 008544 264 QQQNGNKAFTKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRDHA 339 (562)
Q Consensus 264 ~~~~~~~~~~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~~~ 339 (562)
+...+++++..++... -...|=-+.+++++.++.++.|+.+|++...... .+.+++.+++.|+. +.|.+ ....
T Consensus 514 R~~~gLp~~~v~f~~f--N~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~-~~~~ 590 (723)
T 4gyw_A 514 RSQYGLPEDAIVYCNF--NQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSP-VAPK 590 (723)
T ss_dssp GGGGTCCTTSEEEECC--SCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEE-CCCH
T ss_pred hhhcCCCCCCEEEEeC--CccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECC-CCCH
Confidence 4556777766443333 3457778899999999999999999999886543 67888888888876 44433 3333
Q ss_pred H---HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC------ccccc-cCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 340 D---PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS------NDFFK-QFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 340 ~---~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~------~e~v~-~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
. ..|+.+|+++-|-.+ +-+++.+||++||+|||+-.... ..++. -|-.-++..|.+++.+.-.++.+|+
T Consensus 591 ~~~l~~~~~~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~ 669 (723)
T 4gyw_A 591 EEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDL 669 (723)
T ss_dssp HHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCH
T ss_pred HHHHHHhCCCeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCH
Confidence 3 667789999988666 45899999999999999985432 12221 1233356689999999999999988
Q ss_pred CC--CccHHHH------hcCCHHHHHHHHHHHHHhcC
Q 008544 410 PA--QPTDAQT------HQLSWESATERFLQVAELVG 438 (562)
Q Consensus 410 ~~--~l~~~ar------~~~sw~~~~~~~~~~y~~~~ 438 (562)
+. .++++-+ .-|+-...++.+.++|+.+-
T Consensus 670 ~~l~~lr~~l~~~~~~s~l~d~~~~~~~le~a~~~~w 706 (723)
T 4gyw_A 670 EYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMW 706 (723)
T ss_dssp HHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcCHHHHHHHHHHHHHHHH
Confidence 75 4444332 35788888888888887765
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=97.47 E-value=0.051 Score=57.36 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=53.7
Q ss_pred EeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----cccc-ccCCceEeeC-------CHHHH
Q 008544 332 VYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTYD-------GRNGF 398 (562)
Q Consensus 332 ~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v-~~~~~g~~~~-------d~~~l 398 (562)
+..++.+..++++.+++-++=+. +--.+++||+++|+|+|+-...+ ...+ +.-..|...+ +.+++
T Consensus 342 ~v~~w~Pq~~vL~h~~v~~fvtH--gG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l 419 (480)
T 2vch_A 342 VIPFWAPQAQVLAHPSTGGFLTH--CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEV 419 (480)
T ss_dssp EEESCCCHHHHHHSTTEEEEEEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHH
T ss_pred EEeCccCHHHHhCCCCcCeEEec--ccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHH
Confidence 44445566699998885333332 44678999999999999987654 3343 4556666541 68999
Q ss_pred HHHHHHHHhCC
Q 008544 399 VEATLKALAEE 409 (562)
Q Consensus 399 a~~i~~ll~~~ 409 (562)
.++|.++++++
T Consensus 420 ~~av~~vl~~~ 430 (480)
T 2vch_A 420 ARVVKGLMEGE 430 (480)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHhcCc
Confidence 99999999754
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.37 E-value=0.01 Score=59.56 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=67.3
Q ss_pred hcCCCCCc-cEEEEEee-ccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcC----CeeEEeCCCC
Q 008544 266 QNGNKAFT-KGAYYIGR-MVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLK----LVVRVYPGRD 337 (562)
Q Consensus 266 ~~~~~~~~-~~il~vGr-~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~----l~~~~~~~~~ 337 (562)
..+..... .+++..|. ..+.|.+ +.+.+++..+.++ ++++++.|...+.+..++..+..+ .++..+.+..
T Consensus 173 ~~~~~~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~ 250 (348)
T 1psw_A 173 QFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGET 250 (348)
T ss_dssp HTTCCSSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTS
T ss_pred HhCCCCCCcEEEEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcC
Confidence 34444233 45566666 4456665 4888888888765 789999987666555555544332 1243444433
Q ss_pred ---ChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 338 ---HADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 338 ---~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+..++++.||++|... + |..-+ |.|+|+|+|+--.+
T Consensus 251 sl~e~~ali~~a~l~I~~D---s-g~~Hl-Aaa~g~P~v~lfg~ 289 (348)
T 1psw_A 251 QLDQAVILIAACKAIVTND---S-GLMHV-AAALNRPLVALYGP 289 (348)
T ss_dssp CHHHHHHHHHTSSEEEEES---S-HHHHH-HHHTTCCEEEEESS
T ss_pred CHHHHHHHHHhCCEEEecC---C-HHHHH-HHHcCCCEEEEECC
Confidence 3448899999999874 2 33333 99999999987443
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=96.91 E-value=0.037 Score=55.82 Aligned_cols=158 Identities=12% Similarity=0.139 Sum_probs=91.2
Q ss_pred cCCCCCcc-EEEEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCC---hH
Q 008544 267 NGNKAFTK-GAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDH---AD 340 (562)
Q Consensus 267 ~~~~~~~~-~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~---~~ 340 (562)
.++..+.+ +++..|.-...|.+ +.+.+++..+.++ +.+++++|...+.+..++..+..+.....+.+..+ ..
T Consensus 179 ~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ 256 (349)
T 3tov_A 179 HGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLA 256 (349)
T ss_dssp TTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHH
T ss_pred cCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHH
Confidence 34443344 44556654456654 5778888887765 68888899776777777776666544444545433 33
Q ss_pred HHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-cccc-ccCCceEeeCCHHHHHHHHHHHHhCCCCCc--c-H
Q 008544 341 PIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFF-KQFPNCRTYDGRNGFVEATLKALAEEPAQP--T-D 415 (562)
Q Consensus 341 ~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v-~~~~~g~~~~d~~~la~~i~~ll~~~~~~l--~-~ 415 (562)
++++.||++|..- + |..-+ |.|+|+|+|+--.+. +... .-+.+..++.....-. +. ....... + .
T Consensus 257 ali~~a~~~i~~D---s-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~vl~~~~~C~-C~----~~~~~~C~~~~~ 326 (349)
T 3tov_A 257 AAMNRCNLLITND---S-GPMHV-GISQGVPIVALYGPSNPFFYGPYQAHAIVLETMDSYE-IG----KSMKKIIKEGNY 326 (349)
T ss_dssp HHHHTCSEEEEES---S-HHHHH-HHTTTCCEEEECSSCCHHHHSCTTCSEEEECHHHHHH-HH----HHTTCCCCGGGC
T ss_pred HHHHhCCEEEECC---C-CHHHH-HHhcCCCEEEEECCCCccccCCCCCCeEEEeCCCCcC-cc----CCccCCCCCCcc
Confidence 8899999999762 2 44444 899999999985544 3322 2233344443222222 21 1111111 1 0
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 008544 416 AQTHQLSWESATERFLQVAEL 436 (562)
Q Consensus 416 ~ar~~~sw~~~~~~~~~~y~~ 436 (562)
...+..+-+.+.+...+..++
T Consensus 327 ~Cm~~I~~~~V~~a~~~lL~~ 347 (349)
T 3tov_A 327 KGLSVISEEQVIKAAETLLLE 347 (349)
T ss_dssp STTTTSCHHHHHHHHHHHHHH
T ss_pred chhhcCCHHHHHHHHHHHHhh
Confidence 122467777777777666543
No 58
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.08 E-value=0.0073 Score=56.75 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCeeEEeCCCCChHHHHh-hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 327 KLVVRVYPGRDHADPIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 327 ~l~~~~~~~~~~~~~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+.++.++...+++.++|+ .||++|.= +-..+++|++++|+|.|.-..+
T Consensus 113 ~~~v~v~~f~~~m~~~l~~~AdlvIsh----aGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 113 KLKVIGFDFSTKMQSIIRDYSDLVISH----AGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SSEEEECCSSSSHHHHHHHHCSCEEES----SCHHHHHHHHHTTCCCCEECCS
T ss_pred CceEEEeeccchHHHHHHhcCCEEEEC----CcHHHHHHHHHhCCCEEEEcCc
Confidence 345566777789999999 99999954 4578999999999998887554
No 59
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.07 E-value=0.016 Score=60.84 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=77.0
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEE-EeCCCC---HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hc
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDL-YGNGED---FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DY 346 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~g~~---~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~a 346 (562)
..+.+..|..... ..+.+.+++..+.+. +.++++ +|.... .+.+.+ +...++.+.. +.+..+++. .+
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~--~~~~lw~~~~~~~~~l~~~~~~---~~~~~~~v~~-w~pq~~vL~h~~~ 344 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEAS--RVPFIWSLRDKARVHLPEGFLE---KTRGYGMVVP-WAPQAEVLAHEAV 344 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHH--TCCEEEECCGGGGGGSCTTHHH---HHTTTEEEES-CCCHHHHHTSTTE
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhc--CCeEEEEECCcchhhCCHHHHh---hcCCceEEec-CCCHHHHhcCCcC
Confidence 3444556665533 344444444444433 355554 443211 122222 1223455554 445567888 66
Q ss_pred CEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEeeC----CHHHHHHHHHHHHhCC
Q 008544 347 KVFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----GRNGFVEATLKALAEE 409 (562)
Q Consensus 347 dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~~----d~~~la~~i~~ll~~~ 409 (562)
|+||.- +-..+++||+++|+|+|+-...+ ...+.+. ..|...+ +.+++.++|.++++++
T Consensus 345 ~~fvth----~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 345 GAFVTH----CGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQE 413 (456)
T ss_dssp EEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSH
T ss_pred CEEEec----CCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCC
Confidence 788843 45789999999999999987654 4555555 6676653 7899999999999875
No 60
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=95.93 E-value=0.041 Score=57.55 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=78.5
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHH-HHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQ-RAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~-~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
..+.+..|.+.. ...+.+.+.+..+.+. +.+++++-.+...+.+. ...++...++.+. ++.+..+++..+++-++
T Consensus 274 ~vVyvsfGS~~~-~~~~~~~el~~~l~~~--~~~flw~~~~~~~~~lp~~~~~~~~~~~~vv-~w~Pq~~vL~h~~v~~f 349 (454)
T 3hbf_A 274 SVVYISFGSVVT-PPPHELTALAESLEEC--GFPFIWSFRGDPKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVF 349 (454)
T ss_dssp CEEEEECCSSCC-CCHHHHHHHHHHHHHH--CCCEEEECCSCHHHHSCTTHHHHTTTTEEEE-SSCCHHHHHHSTTEEEE
T ss_pred ceEEEecCCCCc-CCHHHHHHHHHHHHhC--CCeEEEEeCCcchhcCCHhHHhhcCCceEEE-eeCCHHHHHhhcCcCeE
Confidence 334455666553 2344455555555443 45666654333222211 1112223345555 45556799999994444
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccccC-CceEeeC----CHHHHHHHHHHHHhCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----GRNGFVEATLKALAEE 409 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~~~-~~g~~~~----d~~~la~~i~~ll~~~ 409 (562)
-+. +--.+++||+++|+|+|+-...+ ...+.+. ..|..++ +.+++.++|.++++++
T Consensus 350 vtH--~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 350 LTH--SGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp EEC--CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred Eec--CCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 333 34678999999999999986643 3445553 6666652 7899999999999763
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=95.21 E-value=0.17 Score=53.35 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=77.2
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC--------CHHHHHHHHHhcCCeeEEeCCCCChHHHHhh
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE--------DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD 345 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~--------~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~ 345 (562)
.+.+..|.+. ....+.+.+++..+.+. +.+++++-..+ ..+.+.+. ...++.+.. +.+..++++.
T Consensus 297 vv~vs~GS~~-~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~v~~-~~pq~~~L~h 369 (482)
T 2pq6_A 297 VVYVNFGSTT-VMTPEQLLEFAWGLANC--KKSFLWIIRPDLVIGGSVIFSSEFTNE---IADRGLIAS-WCPQDKVLNH 369 (482)
T ss_dssp EEEEECCSSS-CCCHHHHHHHHHHHHHT--TCEEEEECCGGGSTTTGGGSCHHHHHH---HTTTEEEES-CCCHHHHHTS
T ss_pred eEEEecCCcc-cCCHHHHHHHHHHHHhc--CCcEEEEEcCCccccccccCcHhHHHh---cCCCEEEEe-ecCHHHHhcC
Confidence 3444556654 23444455555555432 46776653211 12333322 233456655 4455578977
Q ss_pred cCE--EEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccccc-cCCceEeeC---CHHHHHHHHHHHHhCCC
Q 008544 346 YKV--FLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTYD---GRNGFVEATLKALAEEP 410 (562)
Q Consensus 346 adv--~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~v~-~~~~g~~~~---d~~~la~~i~~ll~~~~ 410 (562)
.++ ||.- +-..+++||+++|+|+|+-...+ ...+. +-..|...+ +.+++.++|.++++|+.
T Consensus 370 ~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 370 PSIGGFLTH----CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAGDK 441 (482)
T ss_dssp TTEEEEEEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTSHH
T ss_pred CCCCEEEec----CCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcCCc
Confidence 665 6532 45789999999999999997754 33343 456676664 89999999999998763
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=95.16 E-value=0.23 Score=52.02 Aligned_cols=127 Identities=8% Similarity=-0.055 Sum_probs=75.5
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCC---CHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcC
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGE---DFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~---~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~ad 347 (562)
..+.+..|.+...-+.+.+.+++..+.+. +.+++++-... ..+.+.+.... ..++.+.. +.+..+++. .+|
T Consensus 277 ~vv~vs~GS~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~v~~-w~pq~~vL~h~~~~ 352 (463)
T 2acv_A 277 SVVFLCFGSMGVSFGPSQIREIALGLKHS--GVRFLWSNSAEKKVFPEGFLEWMEL-EGKGMICG-WAPQVEVLAHKAIG 352 (463)
T ss_dssp CEEEEECCSSCCCCCHHHHHHHHHHHHHH--TCEEEEECCCCGGGSCTTHHHHHHH-HCSEEEES-SCCHHHHHHSTTEE
T ss_pred ceEEEEeccccccCCHHHHHHHHHHHHhC--CCcEEEEECCCcccCChhHHHhhcc-CCCEEEEc-cCCHHHHhCCCccC
Confidence 34455666665233444444445444433 46666654322 11233322210 12345555 445557786 577
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-----ccc-cccCCceEee------C----CHHHHHHHHHHHHh
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-----NDF-FKQFPNCRTY------D----GRNGFVEATLKALA 407 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-----~e~-v~~~~~g~~~------~----d~~~la~~i~~ll~ 407 (562)
+||.- +-..+++||+++|+|+|+-...+ ... +.+-..|..+ + +.+++.++|.++++
T Consensus 353 ~fvth----~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 353 GFVSH----CGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp EEEEC----CCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred eEEec----CCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 78743 45789999999999999987653 344 4565666655 1 67899999999995
No 63
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=91.46 E-value=1.4 Score=48.56 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCccEEEEEeeccccCCHHH-HHHHHHHH---HHh-------------cCCcEEEEEeCCC--C--HHHHHHHHHh----
Q 008544 271 AFTKGAYYIGRMVWSKGYEE-LLGLLNIY---HKE-------------LAGLEMDLYGNGE--D--FDQIQRAAKK---- 325 (562)
Q Consensus 271 ~~~~~il~vGr~~~~Kg~~~-ll~a~~~l---~~~-------------~~~~~l~ivG~g~--~--~~~l~~~~~~---- 325 (562)
++...++++-|+..+|...+ ++..+.++ +.. ....++++.|.-. + .+.+.+++..
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 45778889999999999888 56655444 333 2457777777622 1 1223222222
Q ss_pred ------cCC--eeEEeCCCC--ChHHHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEeeCCCC-cccccc--CCceE
Q 008544 326 ------LKL--VVRVYPGRD--HADPIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVCANHPS-NDFFKQ--FPNCR 390 (562)
Q Consensus 326 ------l~l--~~~~~~~~~--~~~~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~~--~~~g~ 390 (562)
.+. ++.|+..++ -.+.++..||+-.+.|+ .|..|+.-+=+|.-|.+.|+|--|. -|+.++ ..|+|
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~f 757 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVF 757 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSE
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEE
Confidence 122 355555543 23378899999999886 7999999999999999999997775 666654 56999
Q ss_pred eeC-CHHHHHH
Q 008544 391 TYD-GRNGFVE 400 (562)
Q Consensus 391 ~~~-d~~~la~ 400 (562)
++. +.+++.+
T Consensus 758 iFG~~~~ev~~ 768 (879)
T 1ygp_A 758 LFGNLSENVEE 768 (879)
T ss_dssp EESCCHHHHHH
T ss_pred EccCCHHHHHH
Confidence 986 5555433
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=91.21 E-value=1 Score=44.38 Aligned_cols=128 Identities=12% Similarity=0.120 Sum_probs=72.5
Q ss_pred ccEEEEEeeccccCCH--HHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCC--CCChHHHHhhcC
Q 008544 273 TKGAYYIGRMVWSKGY--EELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPG--RDHADPIFHDYK 347 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~--~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~--~~~~~~l~~~ad 347 (562)
..+++..|.-.+.|.+ +.+.+++..+.++ ++++++.+.++. .+..++..+..+ .+.+.+. ..+..++++.||
T Consensus 179 ~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~ 255 (326)
T 2gt1_A 179 EYAVFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAK 255 (326)
T ss_dssp SEEEEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCS
T ss_pred CEEEEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCC
Confidence 3455666654555654 4777777777543 788888743443 334444444333 2444332 223348899999
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC-ccccc-cCCceEe--------eC-CHHHHHHHHHHHHhC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANHPS-NDFFK-QFPNCRT--------YD-GRNGFVEATLKALAE 408 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~-~e~v~-~~~~g~~--------~~-d~~~la~~i~~ll~~ 408 (562)
++|..- + |..-+ |.|+|+|+|+--.+. +.... -+....+ -+ ++++..+++.+++++
T Consensus 256 l~I~~D---S-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 256 FVVSVD---T-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEEEES---S-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EEEecC---C-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 999762 2 44555 777999999873332 11110 1111111 12 778888888877754
No 65
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=83.82 E-value=5.7 Score=43.86 Aligned_cols=171 Identities=8% Similarity=-0.073 Sum_probs=95.9
Q ss_pred ccEEEEcChhhhccCC-----C-ccccccccCC--CCcC-cc---hhhhHHhhcCCCCCccEEEEEeeccccC----C--
Q 008544 226 CHKVIRLSAATQEYPN-----S-IVCNVHGVNP--KFLE-IG---EKKMEQQQNGNKAFTKGAYYIGRMVWSK----G-- 287 (562)
Q Consensus 226 ad~vi~~S~~~~~~~~-----~-~~~~v~GVd~--~~~~-~~---~~~~~~~~~~~~~~~~~il~vGr~~~~K----g-- 287 (562)
.|.+++.|+...+... . ......|..- .++. .. .....+...++++++++|+|.-...... |
T Consensus 479 ~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~~~~~kk~ILyaPT~r~~~~~~~~~~ 558 (729)
T 3l7i_A 479 WDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLNLPSDKKVIMYAPTWRDDEFVSKGKY 558 (729)
T ss_dssp CSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTTCCSSCEEEEECCCCCGGGCCGGGSS
T ss_pred CCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhCCCCCCeEEEEeeeeeCCcccccccc
Confidence 4999999988766321 1 1111224322 1121 11 1122345677788899999998654321 1
Q ss_pred ---HHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHH--HhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHH
Q 008544 288 ---YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAA--KKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTAT 362 (562)
Q Consensus 288 ---~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~--~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~ 362 (562)
...-++.+.+... +++.+++-.- +. +.... ......+.-.....+..+++..+|++|-= ++-++
T Consensus 559 ~~~~~~~~~~l~~~l~--~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~~~~di~~ll~~aD~lITD-----ySSv~ 627 (729)
T 3l7i_A 559 LFELKIDLDNLYKELG--DDYVILLRMH-YL---ISNALDLSGYENFAIDVSNYNDVSELFLISDCLITD-----YSSVM 627 (729)
T ss_dssp CCCCTTCHHHHHHHHT--TTEEEEECCC-HH---HHTTCCCTTCTTTEEECTTCSCHHHHHHTCSEEEES-----SCTHH
T ss_pred ccchhhHHHHHHHHcC--CCeEEEEecC-cc---hhccccccccCCcEEeCCCCcCHHHHHHHhCEEEee-----chHHH
Confidence 1111233322222 3666666543 21 11110 01111122356677889999999999943 56789
Q ss_pred HHHHHcCCcEEeeCCCCccc----------cccCCceEeeCCHHHHHHHHHHHHh
Q 008544 363 AEALAMGKIVVCANHPSNDF----------FKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 363 lEAma~G~PVI~t~~~~~e~----------v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
.|++..++|||-....-.++ +.+...|-++.|.+++.++|.....
T Consensus 628 fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~~~~~ 682 (729)
T 3l7i_A 628 FDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELKNLDK 682 (729)
T ss_dssp HHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHTTHHH
T ss_pred HhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHhhhhc
Confidence 99999999999883322111 1222345667899999999987754
No 66
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=73.45 E-value=21 Score=29.90 Aligned_cols=108 Identities=6% Similarity=-0.076 Sum_probs=68.1
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI~ 374 (562)
..+++|+.+.+. .+.+++..+..|..+.......+..+.+. ..|++++-. ..+.-|..+++.+. ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 467777776433 46666777776765544443333334443 357766653 34556778888775 3567766
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~ 411 (562)
. .... .+.+..|..+++.. +.+++.++|..++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4 3333 44566778888874 899999999998875543
No 67
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=71.29 E-value=34 Score=27.80 Aligned_cols=106 Identities=9% Similarity=-0.030 Sum_probs=67.2
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~ 374 (562)
..+++++.+.+. ...++...++.+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 356777776433 45666666666766544443333333443 347777653 345567788888765 678776
Q ss_pred eCCC-C----c-cccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 375 ANHP-S----N-DFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 375 t~~~-~----~-e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
-... . . +.+..+..+++.. +.+++.++|..++...
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 6443 2 2 5566677888864 9999999999988643
No 68
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=68.84 E-value=39 Score=27.54 Aligned_cols=104 Identities=13% Similarity=0.000 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh---hcCEEEEccC-CC-CCcHHHHHHHH--cCCcEEee
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH---DYKVFLNPST-TD-VVCTATAEALA--MGKIVVCA 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~---~adv~v~pS~-~E-~~~~~~lEAma--~G~PVI~t 375 (562)
..+++|+.+.+. .+.++......|..+.......+..+.+. ..|+++.-.. .+ .-|..+++.+. -.+|||.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 356777776433 46667777777766554444333334443 3577776543 23 45667776655 46787665
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..|..+++.. +.+++.++|..++.
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3332 34556677778764 99999999998875
No 69
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=68.84 E-value=26 Score=28.81 Aligned_cols=106 Identities=7% Similarity=-0.073 Sum_probs=67.1
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~ 374 (562)
..+++++.+.+. .+.+.......|..+.......+..+.+. ..|++++-. ..+.-|..+++.+.. .+|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 467788877544 46677777766765554443333333333 357776653 344567788888764 577665
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
- .... .+.+..|..+++.. +.+++..+|..++...
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 4 4333 34456778888874 8999999998887643
No 70
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=68.39 E-value=36 Score=27.66 Aligned_cols=104 Identities=8% Similarity=-0.019 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~ 374 (562)
..+++++.+.+. .+.+....+..+..+.......+..+.+.. .|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 467777776433 466666667667655444433333344443 46666543 334567778887754 467665
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
- +... .+.+..|..+++.. +.+++.++|..++.
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4 3332 44556667777764 89999999988774
No 71
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=68.20 E-value=15 Score=35.39 Aligned_cols=72 Identities=10% Similarity=0.056 Sum_probs=53.3
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+.++++++-+-+ .+.+..++.+++.+.. .+.+.++++...|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 27 ~~~~~~~l~av~d-~~~~~~~~~a~~~~~~-----~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (308)
T 3uuw_A 27 TKSERFEFVGAFT-PNKVKREKICSDYRIM-----PFDSIESLAKKCDCIFLHSSTETHYEIIKILLNLGVHVYVDKP 98 (308)
T ss_dssp TSCSSSEEEEEEC-SCHHHHHHHHHHHTCC-----BCSCHHHHHTTCSEEEECCCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred HhCCCeEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCC
Confidence 3457888886655 4567777777777753 2678888998999888877655555567899999999997644
No 72
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=67.59 E-value=33 Score=27.99 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=64.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh----hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH----DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~----~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t 375 (562)
.+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 56777776433 46667777777765554444444444444 457666543 345566777666543 5776654
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..|..+++.. +.+++..+|..++.
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHH
Confidence 3333 45566778888874 89999999998875
No 73
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=66.68 E-value=42 Score=27.14 Aligned_cols=107 Identities=6% Similarity=0.038 Sum_probs=67.1
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHh-cCCe-eEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKK-LKLV-VRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIV 372 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~-l~l~-~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PV 372 (562)
..+++++.+.+. ...++..... .+.. +.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 467777776443 4566666666 6766 444444333434444 357766653 344567778887765 5677
Q ss_pred Eee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 373 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 373 I~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
|.. +... .+.+..+..+++.. +.+++.++|..++....
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 654 4433 44556777888864 99999999999887544
No 74
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=66.30 E-value=23 Score=34.72 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=54.0
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+..|+++++-+.+ .+.+..++.+++++..- + +.+.+++++. .|+++..+....-.-.+.+|+.+|++|+|=..
T Consensus 44 ~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~-~---y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKP 118 (350)
T 4had_A 44 QDAENCVVTAIAS-RDLTRAREMADRFSVPH-A---FGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKP 118 (350)
T ss_dssp HHCSSEEEEEEEC-SSHHHHHHHHHHHTCSE-E---ESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred HhCCCeEEEEEEC-CCHHHHHHHHHHcCCCe-e---eCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCC
Confidence 4567899887776 46777888888888642 2 4678888875 68877776555545567899999999998754
No 75
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=65.98 E-value=34 Score=31.34 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=27.3
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.+||++++...... + ...+...++..+..+|...
T Consensus 74 ~~~~~l~~~~~Dliv~agy~~i--l--~~~~l~~~~~~~iNiHpSL 115 (215)
T 3tqr_A 74 TLQKTIDHYDPKLIVLAGFMRK--L--GKAFVSHYSGRMINIHPSL 115 (215)
T ss_dssp HHHHHHHTTCCSEEEESSCCSC--C--CHHHHHHTTTSEEEEESSS
T ss_pred HHHHHHHhcCCCEEEEccchhh--C--CHHHHhhccCCeEEeCccc
Confidence 4677888999999998875433 2 2334455554566777654
No 76
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=64.71 E-value=31 Score=33.83 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=52.4
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
..++++++-+-+ .+.+..++.++++++...+ +.+.++++.. .|+++..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~~~~~g~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 24 KLSGAEIVAVTD-VNQEAAQKVVEQYQLNATV---YPNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp TCSSEEEEEEEC-SSHHHHHHHHHHTTCCCEE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCC
Confidence 557888876654 4567777788887753333 3677888886 88888877655555567899999999998644
No 77
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=63.75 E-value=50 Score=28.23 Aligned_cols=90 Identities=20% Similarity=0.166 Sum_probs=55.5
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHh----hcC-EEEEccCCCCCcHHHHHHH----HcCCcEEeeCCC---Ccc-
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEAL----AMGKIVVCANHP---SND- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAm----a~G~PVI~t~~~---~~e- 381 (562)
+.+++.+.++|..+.++....+-+ +.++ .+| +.++|--+-..+.++.+|+ +.++|+|---.. .+|
T Consensus 36 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~ 115 (151)
T 3u80_A 36 KLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDE 115 (151)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC----
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccc
Confidence 445556666676666654433222 3333 345 8889987777899999994 459999976332 255
Q ss_pred -----ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 -----FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 -----~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.++. -.+...-+++.++
T Consensus 116 FRh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 116 FRKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp -----CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred hhhcccccccceEEEEecChHHHHHHHHHHH
Confidence 555667788875 5566655555544
No 78
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=63.53 E-value=37 Score=26.70 Aligned_cols=105 Identities=8% Similarity=-0.010 Sum_probs=63.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CC-CCCcHHHHHHHH-----cCCcEEe
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TT-DVVCTATAEALA-----MGKIVVC 374 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~-E~~~~~~lEAma-----~G~PVI~ 374 (562)
.+++++.+.+. .+.+++..+..|..+.......+..+.+. ..|+++.-. .. +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 45667765332 35566666666665544333333333333 357766543 23 445677777774 4688887
Q ss_pred eCCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 375 ANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 375 t~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
..... .+.+..+..+++.. +.+++.+.+..++..+
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 86 IGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 72222 34556677788864 9999999999988654
No 79
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=63.44 E-value=10 Score=34.53 Aligned_cols=97 Identities=16% Similarity=0.055 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCCC--ChHHHHhhcCEEEEccCCCCC
Q 008544 285 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGRD--HADPIFHDYKVFLNPSTTDVV 358 (562)
Q Consensus 285 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~~--~~~~l~~~adv~v~pS~~E~~ 358 (562)
.|-++.|.+|+.-+..- ..-++.++|.... .+.+++.++..|.. -+|++|.- ....-+..=|+++.....+ -
T Consensus 50 ~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~-e 127 (208)
T 1vi6_A 50 RKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAI-D 127 (208)
T ss_dssp HHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTT-T
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCc-c
Confidence 45556666666666544 4577889998655 45667777776654 23456621 1112233456666554322 2
Q ss_pred cHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 359 CTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 359 ~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
-.++.||...|.|||+- |..+ ++.+
T Consensus 128 ~~ai~EA~~l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 128 KQAVSEATAVGIPVVALCDSNNSSADV 154 (208)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred hhHHHHHHHhCCCEEEEeCCCCCcccc
Confidence 57899999999999998 6554 4444
No 80
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=63.34 E-value=47 Score=26.49 Aligned_cols=106 Identities=7% Similarity=0.007 Sum_probs=63.6
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~ 374 (562)
..+++++.+.+. ...+++...+.+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 356777776433 45666666666665554443333333343 346666543 345567788887763 345665
Q ss_pred eCCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 375 ANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 375 t~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
+.... .+.+..|..+++.. +.+++.++|.......
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 54432 34556778888874 9999999999887643
No 81
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=61.35 E-value=55 Score=28.46 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHH----hhcC-EEEEccCCCCCcHHHHHHH-HcCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIF----HDYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~----~~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+.++|+.+.++....+-+ +.+ ..+| +.++|--+--.+.++.+|+ +.++|+|---.. .+|
T Consensus 60 ~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh 139 (172)
T 3n8k_A 60 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 139 (172)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccc
Confidence 344555556666666554432222 333 3345 8889987777899999998 567999876332 255
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHHh
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKALA 407 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll~ 407 (562)
++.+-..|.++. -.+...-+++.+++
T Consensus 140 hS~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 140 HSYLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccceEEEEeCChHHHHHHHHHHHH
Confidence 555667788875 66677666666554
No 82
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=61.17 E-value=29 Score=33.73 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=51.6
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++++++-+-+ .+.+..++.+++.+.. +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 95 (331)
T 4hkt_A 24 GNADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKP 95 (331)
T ss_dssp HCTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecC
Confidence 356888876554 4566777777777753 478888998 789888876555555567889999999998654
No 83
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=60.89 E-value=50 Score=26.41 Aligned_cols=103 Identities=11% Similarity=-0.001 Sum_probs=63.1
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCCChHHHHh---------hcCEEEEcc-CCCCCcHHHHHHHH----
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH---------DYKVFLNPS-TTDVVCTATAEALA---- 367 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~---------~adv~v~pS-~~E~~~~~~lEAma---- 367 (562)
.+++++.+.+. .+.++...+..+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 45667765433 4666777777666 3444444334444444 367777653 33445677777765
Q ss_pred -cCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 368 -MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 368 -~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
..+|||.- .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 35676654 3332 44556677888864 89999999988765
No 84
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=60.71 E-value=19 Score=35.81 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=60.9
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEE
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLN 351 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~ 351 (562)
..|..||-=...+..-..+.++..+....++++++-+-+ .+.+..++.+++++... + +.+.+++++. .|+++.
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d-~~~~~a~~~a~~~g~~~-~---y~d~~ell~~~~iDaV~I 100 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAE-ANAGLAEARAGEFGFEK-A---TADWRALIADPEVDVVSV 100 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEEC-C--TTHHHHHHHHTCSE-E---ESCHHHHHHCTTCCEEEE
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEEC-CCHHHHHHHHHHhCCCe-e---cCCHHHHhcCCCCcEEEE
Confidence 345566531111222222333333334557888888776 44556677778777642 2 4678888874 577777
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+....-.-.+.+|+.+|++|+|=..
T Consensus 101 atP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 101 TTPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCChHHHHHHHHHHHhcCCeEEEccC
Confidence 76555556668999999999998754
No 85
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=60.08 E-value=39 Score=28.26 Aligned_cols=63 Identities=5% Similarity=0.019 Sum_probs=39.9
Q ss_pred hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 345 DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 345 ~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
..|++++-. ..+.-|..+++.+. ..+|||.. .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 83 ~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp GCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 346666543 23445666666554 35676655 3332 45566778888874 89999999998764
No 86
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=59.71 E-value=49 Score=26.17 Aligned_cols=102 Identities=10% Similarity=-0.073 Sum_probs=60.1
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEEee-
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA- 375 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI~t- 375 (562)
+++++.+.+. .+.++...+..|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||.-
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 4556655332 34555555666655443332222223333 347766643 34456778888774 35776654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
..+. .+.+..|..+++.. +++++.+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3333 34556778888874 99999999998875
No 87
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.61 E-value=17 Score=32.87 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
-.|-++.|.+|+.-+... ..-.+.++|.... .+.+.+.++..|.. -+|.+|. +...+-+..=|+++.....+
T Consensus 45 L~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~- 122 (202)
T 3j20_B 45 VRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRA- 122 (202)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCcc-
Confidence 345566777777766654 3467888998665 45666666665532 3456661 22222334556666654321
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
=-.++.||...|+|+|+- |..+ .+.+
T Consensus 123 d~~ai~EA~~l~IP~Ial~DTn~~p~~V 150 (202)
T 3j20_B 123 DHQAMREAVEIGIPIVALVDTENLLSYV 150 (202)
T ss_dssp SHHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred chHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 256899999999999986 5554 4443
No 88
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=59.47 E-value=1.5e+02 Score=30.95 Aligned_cols=205 Identities=12% Similarity=0.026 Sum_probs=98.0
Q ss_pred cCCCcEEEecC------CchhhhhhchHHHHhhcC-CEEEEEcCCcHHHHhh---hhchHHHHHHHHHHHHHHHHH--hc
Q 008544 159 DEEADIAVLEE------PEHLTWFHHGKRWKAKFR-FVVGIVHTNYLEYVKR---EKNDRLQAFLLEFVNSWLARV--HC 226 (562)
Q Consensus 159 ~~~pDvV~~~~------~~~~~~~~~~~~~~~~~~-~vi~~~h~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~a 226 (562)
..++||++++- .+++.++.....+..... --+..+|..+..|... .+..+.+-. .+-++.. .+
T Consensus 133 ~~~~dv~i~eiggtvgdies~pf~ea~rq~~~~~g~~n~~~ih~tlvp~~~~~ge~ktkptqhs-----v~~Lrs~GIqP 207 (535)
T 3nva_A 133 INNAEITLVEIGGTVGDIESLPFLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHS-----VQELRRIGIQP 207 (535)
T ss_dssp HHTCSEEEEEECSCTTSGGGHHHHHHHHHHHHHHCTTTEEEEEEEECCBCTTTSSBCCHHHHHH-----HHHHHHHTCCC
T ss_pred cCCCCEEEEEeCCccchhcccHHHHHHHHHHHHhCCCCEEEEEeeccceecCCCcccCCchHHH-----HHHHHhCCCCC
Confidence 35899999873 344444433233444333 3566677555444432 223332221 2222232 58
Q ss_pred cEEEEcChhhhc------------cCCCccccccccCCCCcCcch------hhhHHhhcCCCCCccEEEEEeeccccCCH
Q 008544 227 HKVIRLSAATQE------------YPNSIVCNVHGVNPKFLEIGE------KKMEQQQNGNKAFTKGAYYIGRMVWSKGY 288 (562)
Q Consensus 227 d~vi~~S~~~~~------------~~~~~~~~v~GVd~~~~~~~~------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~ 288 (562)
|.++|-|+.... ...+.+..+.++|.-+..|.. .....+.++++...+ ....+
T Consensus 208 dilvcRs~~~l~~~~r~KiaLfc~V~~~~VI~i~DvdtiY~vpl~L~~qGl~~~~~~~l~l~~~~~---------~~~~w 278 (535)
T 3nva_A 208 DFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQV---------DLTDW 278 (535)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCCCC---------CCHHH
T ss_pred CEEEEecCCCCCHHHHHhhhhhcCCChhceEecCCCChHHHhHHHHHHCCcHHHHHHHcCCCCCCC---------CHHHH
Confidence 999998743322 123333334455544322211 111222344422110 11223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCC--------HHHHHHHHHhcCCeeEE-eCCCC-----Ch--HHHHhhcCEEEEc
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGNGED--------FDQIQRAAKKLKLVVRV-YPGRD-----HA--DPIFHDYKVFLNP 352 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~g~~--------~~~l~~~~~~l~l~~~~-~~~~~-----~~--~~l~~~adv~v~p 352 (562)
..+++.+... .....+++-++|.=-+ .+.++.....++.++.+ +.... .. .+.+..+|.+++|
T Consensus 279 ~~~~~~~~~~-~~~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlp 357 (535)
T 3nva_A 279 ISFVNNIKGI-NSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVL 357 (535)
T ss_dssp HHHHHHHHTT-TCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEEC
T ss_pred HHHHHHhhcc-CCCCeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEEC
Confidence 3444333210 1123488899998321 15566666666666554 22211 11 3568899988888
Q ss_pred cC-CC----CCcHHHHHHHHcCCcEEeeCCC
Q 008544 353 ST-TD----VVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 353 S~-~E----~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.- .+ +.-..+-+|...|+|++..-.|
T Consensus 358 GG~G~~~~~g~i~~ir~a~~~~~PiLGIClG 388 (535)
T 3nva_A 358 PGFGSRGAEGKIKAIKYAREHNIPFLGICFG 388 (535)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHTCCEEEETHH
T ss_pred CCCCCccHHHHHHHHHHHHHcCCcEEEECcc
Confidence 52 11 1223345666789999877443
No 89
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=59.39 E-value=61 Score=25.78 Aligned_cols=104 Identities=7% Similarity=-0.067 Sum_probs=58.4
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~t 375 (562)
.+++++.+.+. .+.++...+ .+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 45666665332 234444433 3444433333222323333 357666643 344567777777664 6777665
Q ss_pred C-CCC---ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 376 N-HPS---NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 376 ~-~~~---~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
. ... .+.+..+..+++.. +++++.++|..++...
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 3 322 34556667777764 9999999999998654
No 90
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=58.24 E-value=62 Score=25.89 Aligned_cols=107 Identities=7% Similarity=-0.047 Sum_probs=66.4
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--h-cCEEEEcc-CCCCCcHHHHHHHHc----CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--D-YKVFLNPS-TTDVVCTATAEALAM----GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~-adv~v~pS-~~E~~~~~~lEAma~----G~PVI~ 374 (562)
..+++++.+.+. .+.++...++.+..+.......+....+. . .|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 467777776443 46667777777766555443333333333 2 57666653 345567788887754 367766
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
. .... .+.+..|..+++.. +.+++.++|.++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 5 3333 45556678888874 99999999999887554
No 91
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=57.79 E-value=66 Score=26.00 Aligned_cols=107 Identities=7% Similarity=-0.105 Sum_probs=64.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCCChHHHHhh-------cCEEEEcc-CCCCCcHHHHHHHHc----
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFHD-------YKVFLNPS-TTDVVCTATAEALAM---- 368 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~~-------adv~v~pS-~~E~~~~~~lEAma~---- 368 (562)
..+++|+.+.+. ...++......+. .+.......+..+.+.. .|++++-. ..+.-|..+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 356777776433 3556666666665 33334433334345544 67777653 345567778777654
Q ss_pred ---CCcEEeeCC-CC----ccccccC-CceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 369 ---GKIVVCANH-PS----NDFFKQF-PNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 369 ---G~PVI~t~~-~~----~e~v~~~-~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
..|||.... .. .+.+..+ ..+++.. +.+++.++|.+......
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 567665533 32 3445556 7778874 99999999999887553
No 92
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=56.61 E-value=39 Score=33.21 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=52.0
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+.|+++++-+-+ .+.+..++.+++.+.. .+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~~~lvav~d-~~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 25 TKSEKLKLVTCYS-RTEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp TTCSSEEEEEEEC-SSHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred HhCCCcEEEEEEC-CCHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccC
Confidence 3456888876654 4566677777777753 2678889994 578888776555555567899999999998754
No 93
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=56.48 E-value=52 Score=26.47 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHH--c-CCcEEee-C
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALA--M-GKIVVCA-N 376 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma--~-G~PVI~t-~ 376 (562)
..+++++.+.+. .+.++...+..+..+.......+..+.+. ..|++++| +.-|..+++.+. . .+|||.- .
T Consensus 18 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 18 SMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEeC
Confidence 355666655332 34455555555554443333222223333 34777733 233556666654 3 6777655 3
Q ss_pred CCC----ccccccCCceEee--C-CHHHHHHHHHHHHhC
Q 008544 377 HPS----NDFFKQFPNCRTY--D-GRNGFVEATLKALAE 408 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~--~-d~~~la~~i~~ll~~ 408 (562)
... .+.+..|..+++. - +.+++.++|..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 332 4455677788886 3 889999999988754
No 94
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=56.10 E-value=78 Score=25.50 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=62.2
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~t 375 (562)
.+++++.+.+. .+.+....+..|..+.......+..+.+. ..|++++-. ..+.-|..+++.+.. ..|||..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 45666665332 35566666666655443332222223333 347766643 344457777777643 5677654
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.... .+.+..|..+++.. +.+++.++|..++....
T Consensus 85 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 85 TAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp ECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 3333 34556778888874 99999999999887543
No 95
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=55.58 E-value=15 Score=34.49 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
-.|-++.|.+|+..+..-...-+++++|.... .+.+++.++..|.. .+|++|. +.....+..=|+++.....+
T Consensus 84 L~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~- 162 (253)
T 3bch_A 84 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA- 162 (253)
T ss_dssp HHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc-
Confidence 34555666677666652222456888898554 35566667766654 2345661 11112344557666654322
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
=-.++.||...|+|||+- |..+ ++.+
T Consensus 163 e~~AI~EA~~lgIPvIalvDTn~dp~~V 190 (253)
T 3bch_A 163 DHQPLTEASYVNLPTIALCNTDSPLRYV 190 (253)
T ss_dssp THHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred cchHHHHHHHhCCCEEEEEcCCCCcccC
Confidence 256899999999999998 6655 5544
No 96
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=55.40 E-value=26 Score=34.72 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=50.7
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.+++-+.+ .+.+..++.+++++... + +.+.+++++. .|+++..+....-.-.+.+||.+|++|+|=..
T Consensus 37 ~~~l~av~d-~~~~~a~~~a~~~g~~~-~---~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKP 107 (390)
T 4h3v_A 37 HPDLNVLCG-RDAEAVRAAAGKLGWST-T---ETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKP 107 (390)
T ss_dssp EEEEEEEEC-SSHHHHHHHHHHHTCSE-E---ESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CceEEEEEc-CCHHHHHHHHHHcCCCc-c---cCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecC
Confidence 357777765 56777888888888642 2 3678888874 67777776655556678999999999998765
No 97
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=54.52 E-value=57 Score=26.88 Aligned_cols=103 Identities=9% Similarity=0.043 Sum_probs=64.1
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCCChHHHHh-----------hcCEEEEcc-CCCCCcHHHHHHHHc-
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH-----------DYKVFLNPS-TTDVVCTATAEALAM- 368 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~-----------~adv~v~pS-~~E~~~~~~lEAma~- 368 (562)
.+++|+.+.+. .+.++......+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 56777776433 4666777777776 3444444333434442 357776653 345567888888765
Q ss_pred ----CCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 369 ----GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 369 ----G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.+|||.. .... .+.+..|..+++.. +.+++.++|.++..
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5676654 3333 34556778888874 88999988888754
No 98
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=54.48 E-value=58 Score=26.80 Aligned_cols=65 Identities=8% Similarity=-0.035 Sum_probs=43.2
Q ss_pred cCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 346 YKVFLNPS-TTDVVCTATAEALAM---GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 346 adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.|++++-. ..+.-|..+++.+.. .+|||.- .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 46666543 344556777776654 5666554 3333 45566778888874 99999999999987654
No 99
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=54.01 E-value=51 Score=26.55 Aligned_cols=106 Identities=11% Similarity=-0.021 Sum_probs=61.4
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccC-C-----CCCcHHHHHHHH---cCCcE
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPST-T-----DVVCTATAEALA---MGKIV 372 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~-~-----E~~~~~~lEAma---~G~PV 372 (562)
.+++++.+.+. .+.++...+..+..+.......+..+.+.. .|++++-.. . +.-|..+++.+. ..+||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 56677765332 355666666656555444333333344443 466665432 2 445666666654 36776
Q ss_pred Eee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 373 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 373 I~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
|.- .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 84 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp EEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred EEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 654 3332 44556677788763 89999999999887543
No 100
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=53.85 E-value=41 Score=33.18 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=50.6
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
..++++++-+-+ .+.+..++.+++.++.... +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 45 ~~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 119 (357)
T 3ec7_A 45 TVSGVEVVAVCD-IVAGRAQAALDKYAIEAKD---YNDYHDLINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKP 119 (357)
T ss_dssp TCTTEEEEEEEC-SSTTHHHHHHHHHTCCCEE---ESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCcEEEEEEe-CCHHHHHHHHHHhCCCCee---eCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecC
Confidence 567888886655 3445556667777743333 357788887 478888876655555667899999999998754
No 101
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=53.74 E-value=27 Score=28.49 Aligned_cols=107 Identities=9% Similarity=-0.060 Sum_probs=65.1
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHh-cCCeeEEeCCCCChHHHHhh---cCEEEEccC-C-CCCcHHHHHHHHc-----CCc
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKK-LKLVVRVYPGRDHADPIFHD---YKVFLNPST-T-DVVCTATAEALAM-----GKI 371 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~-l~l~~~~~~~~~~~~~l~~~---adv~v~pS~-~-E~~~~~~lEAma~-----G~P 371 (562)
..+++|+.+.+. ...++...+. .+..+.......+..+.+.. .|+++.-.. . +.-|..+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 356777766433 4566666666 66655544333333333333 577776543 3 3456677777654 678
Q ss_pred EEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 372 VVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 372 VI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
||.- .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 7765 3332 44556778888874 89999999999987544
No 102
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=53.72 E-value=25 Score=30.61 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHhhcCEEEEcc-CCCCCcHHH---HHHHHcCCcEEeeCCC----C-c---------ccccc-------------CCce
Q 008544 341 PIFHDYKVFLNPS-TTDVVCTAT---AEALAMGKIVVCANHP----S-N---------DFFKQ-------------FPNC 389 (562)
Q Consensus 341 ~l~~~adv~v~pS-~~E~~~~~~---lEAma~G~PVI~t~~~----~-~---------e~v~~-------------~~~g 389 (562)
+.+..||++|.-- -.+.=+-+. -=|.|.|+||++-... + . |..++ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 5678999877531 122223344 4478999999987442 1 1 11111 1278
Q ss_pred EeeCCHHHHHHHHHHHH
Q 008544 390 RTYDGRNGFVEATLKAL 406 (562)
Q Consensus 390 ~~~~d~~~la~~i~~ll 406 (562)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88899999999998764
No 103
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=53.71 E-value=45 Score=26.86 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=64.2
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEeeC
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCAN 376 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t~ 376 (562)
..+++++.+.+. .+.+++.....+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 356777776433 35566666665544444443333333333 457777653 345567777776653 57777653
Q ss_pred C-CC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 377 H-PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 377 ~-~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
. .. .+.+..|..+++.. +.+++.++|.++++.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 3 32 34566778888864 999999999998763
No 104
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=53.59 E-value=80 Score=24.83 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=62.1
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
+.+++++.+.+. .+.++......+..+.......+..+.+.. .|+++.-- ..+.-|..+++.+. ...|||..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 456777776443 455666666666654433322222233332 46666542 23345666777664 35677654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.... .+.+..|..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 83 GHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp CTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 4333 45566788888874 899999999988754
No 105
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=53.54 E-value=38 Score=33.83 Aligned_cols=71 Identities=10% Similarity=0.091 Sum_probs=51.3
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
..++++++-+-+ .+.+..++.+++.+.. .+.+.++++.. .|+++..+....-.-.+.+|+..|++|++-..
T Consensus 24 ~~~~~~l~av~d-~~~~~~~~~a~~~g~~-----~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 24 HHPDAQIVAACD-PNEDVRERFGKEYGIP-----VFATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp HCTTEEEEEEEC-SCHHHHHHHHHHHTCC-----EESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCeEEEEEEe-CCHHHHHHHHHHcCCC-----eECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCC
Confidence 456788876665 4566667777777653 24678888886 79888876655545567899999999998754
No 106
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=52.88 E-value=79 Score=24.60 Aligned_cols=104 Identities=10% Similarity=-0.036 Sum_probs=58.8
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEeeC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCAN 376 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~t~ 376 (562)
+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+.++-. ..+.-|..+++.+.. .+|||...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4556665332 35556666666655433322122222332 357766543 234456777777753 56776653
Q ss_pred -CCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 377 -HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 377 -~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
... .+.+..|..+++.. +.+++.+++..++...
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (124)
T 1mb3_A 83 AFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122 (124)
T ss_dssp ------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcC
Confidence 222 34456677888874 8999999999887643
No 107
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=52.56 E-value=55 Score=31.92 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++++++-+-+ .+.+..++.+++.+... .+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 23 ~~~~~~l~av~d-~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 23 MIDDAILYAISD-VREDRLREMKEKLGVEK----AYKDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKP 96 (344)
T ss_dssp GSTTEEEEEEEC-SCHHHHHHHHHHHTCSE----EESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHhCCCc----eeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECC
Confidence 357888876654 45666677777776521 2467888888 789888876555545567889999999998754
No 108
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=52.49 E-value=75 Score=26.16 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
..+++++.+.+. ...+....+..+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ..+|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 567777776433 45566666666665544433333334443 347776643 33445666666664 36777655
Q ss_pred CCCC----ccccccC-CceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~----~e~v~~~-~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..+ ..+++.. +.+++..+|..++.
T Consensus 87 ~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 87 GYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp CGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 3332 3344455 6778764 88999999988764
No 109
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=52.46 E-value=71 Score=27.68 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred cC-EEEEccCCCCCcHHHHHHH-HcCCcEEeeCCC---Ccc------ccccCCceEeeC-CHHHHHHHHHHHHh
Q 008544 346 YK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND------FFKQFPNCRTYD-GRNGFVEATLKALA 407 (562)
Q Consensus 346 ad-v~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~---~~e------~v~~~~~g~~~~-d~~~la~~i~~ll~ 407 (562)
+| +.++|--+--.+.++.+|+ +.++|+|---.. .+| ++.+-..|.++. -.+...-+++.+++
T Consensus 84 ~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 84 VGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYALN 157 (167)
T ss_dssp CCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHTT
T ss_pred ccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHHH
Confidence 45 7889977767899999997 568999876333 255 556667888876 67777777777665
No 110
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=52.43 E-value=54 Score=31.85 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=50.5
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++++++-+-+ .+.+..++.+++.+.. ..+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 26 ~~~~~~l~av~d-~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 99 (330)
T 3e9m_A 26 ESAQAEVRGIAS-RRLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKP 99 (330)
T ss_dssp HSSSEEEEEEBC-SSSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSS
T ss_pred hCCCcEEEEEEe-CCHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCC
Confidence 346788776654 3456667777776652 23577888988 789888776554545567889999999998654
No 111
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=51.69 E-value=87 Score=25.72 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=57.2
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEeeCC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCANH 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t~~ 377 (562)
.+++|+.+.+. ...++...+..+..+.......+..+.+. ..|++++-. ..+.-|..+++.+. ..+|||.-..
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 45666654322 34455555555544433333222223333 346666543 34445666766654 4677766533
Q ss_pred -CC----ccccccC-CceEeeC--CHHHHHHHHHHHHh
Q 008544 378 -PS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 378 -~~----~e~v~~~-~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.. .+.+..+ ..+++.. +.+++..+|..++.
T Consensus 95 ~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 32 3445566 6778764 89999999998875
No 112
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=51.47 E-value=89 Score=24.76 Aligned_cols=107 Identities=12% Similarity=0.007 Sum_probs=66.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeE-EeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee-
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA- 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t- 375 (562)
.+++++.+.+. .+.++...++.+..+. ......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||.-
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 45667765433 4666777777775544 3444555555444 457666643 345567777776653 5666654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~ 411 (562)
.... .+.+..|..+++.. +.+++.++|..++.....
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 3332 44556778888874 899999999999876553
No 113
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=51.35 E-value=88 Score=27.03 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.5
Q ss_pred HHHhhcCEEEEc---cC-CCCCcHHHHH---HHHcCCcEEeeCC
Q 008544 341 PIFHDYKVFLNP---ST-TDVVCTATAE---ALAMGKIVVCANH 377 (562)
Q Consensus 341 ~l~~~adv~v~p---S~-~E~~~~~~lE---Ama~G~PVI~t~~ 377 (562)
+.+..||++|.- -. .+.-+.+..| |.|.|+|||+-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 678899977654 11 2333445555 6899999999643
No 114
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=51.28 E-value=70 Score=25.93 Aligned_cols=104 Identities=9% Similarity=0.036 Sum_probs=64.4
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCe--eEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIV 372 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PV 372 (562)
..+++++.+.+. .+.++...+..+.. +.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 467777776433 46667777777765 222333333334443 347776653 344567888888765 5777
Q ss_pred Eee-CCCC----ccccccCCceEee--C-CHHHHHHHHHHHHh
Q 008544 373 VCA-NHPS----NDFFKQFPNCRTY--D-GRNGFVEATLKALA 407 (562)
Q Consensus 373 I~t-~~~~----~e~v~~~~~g~~~--~-d~~~la~~i~~ll~ 407 (562)
|.- .... .+.+..|..+++. - +.+++.++|..+++
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 765 3333 4456677888886 3 78899998888775
No 115
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=50.84 E-value=18 Score=30.61 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=31.3
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeE-EEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRV-TLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eV-tvit~ 90 (562)
|||+|+.+.. |+.+-.+...+.+|..+.+.| |+| .|+-.
T Consensus 13 ~~~~ivv~~~-Pyg~~~a~~Al~~A~aala~g-~eV~~VFf~ 52 (140)
T 2d1p_A 13 MRFAIVVTGP-AYGTQQASSAFQFAQALIADG-HELSSVFFY 52 (140)
T ss_dssp CEEEEEECSC-SSSSSHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred eEEEEEEcCC-CCCcHHHHHHHHHHHHHHHCC-CccCEEEEe
Confidence 8999998865 776555677788999988887 999 88854
No 116
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=50.61 E-value=90 Score=24.91 Aligned_cols=104 Identities=11% Similarity=-0.029 Sum_probs=63.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEE-eCCCCChHHHHh--hcCEEEEccCC--CCCcHHHHHHHH--cCCcEEee
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRV-YPGRDHADPIFH--DYKVFLNPSTT--DVVCTATAEALA--MGKIVVCA 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~--~adv~v~pS~~--E~~~~~~lEAma--~G~PVI~t 375 (562)
..+++++.+.+. .+.++...+..+..+.. .....+..+.+. ..|+++.-... +.-|..+++.+. ..+|||.-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~l 88 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFI 88 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 467777776443 45666666666766552 443333333333 35777765332 345666666654 57887765
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..+..+++.. +.+++..+|..++.
T Consensus 89 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 89 TSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp ECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3333 34556677888863 89999999998875
No 117
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=50.59 E-value=15 Score=30.86 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=31.0
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.+|++|+.+.. |+....+...+.+|...+..| |+|+|+-.
T Consensus 15 ~~kl~ii~~sg-P~~~~~~~~al~lA~~A~a~g-~eV~vFf~ 54 (134)
T 3mc3_A 15 XXXILIVVTHG-PEDLDRTYAPLFMASISASME-YETSVFFM 54 (134)
T ss_dssp CCEEEEEECCC-GGGTHHHHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred cceEEEEEccC-CCCHHHHHHHHHHHHHHHHCC-CCEEEEEE
Confidence 47899888864 665555667788888888887 99999965
No 118
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=50.48 E-value=93 Score=30.60 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=60.4
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEE
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLN 351 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~ 351 (562)
..+..+|- -.-+...++.++. .++++++-+-+ .+.+..++.+++.+.. ..+.+.++++.. .|+++.
T Consensus 27 irvgiiG~--G~~~~~~~~~~~~-----~~~~~lvav~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~vD~V~I 94 (361)
T 3u3x_A 27 LRFAAVGL--NHNHIYGQVNCLL-----RAGARLAGFHE-KDDALAAEFSAVYADA----RRIATAEEILEDENIGLIVS 94 (361)
T ss_dssp CEEEEECC--CSTTHHHHHHHHH-----HTTCEEEEEEC-SCHHHHHHHHHHSSSC----CEESCHHHHHTCTTCCEEEE
T ss_pred cEEEEECc--CHHHHHHHHHHhh-----cCCcEEEEEEc-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEE
Confidence 45666663 1224344455442 26888887776 4567777777777631 124688888885 788877
Q ss_pred ccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 352 PSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 352 pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+....-.-.+.+|+.+|++|++-..
T Consensus 95 ~tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 95 AAVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred eCChHHHHHHHHHHHHCCCeEEEeCC
Confidence 76544445557899999999998754
No 119
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=50.31 E-value=54 Score=27.13 Aligned_cols=103 Identities=9% Similarity=0.003 Sum_probs=60.4
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. ...+.......|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ..+|||.. +
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 45667765433 45566666666665543332222222222 347666543 33445666666654 36787655 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++..+|..++.
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 332 44556777888864 89999999998875
No 120
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=50.29 E-value=89 Score=24.40 Aligned_cols=103 Identities=7% Similarity=-0.030 Sum_probs=58.2
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH--cCCcEEee-CCC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 378 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVI~t-~~~ 378 (562)
+++++.+.+. .+.++...+..|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||.- ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 4566665332 35555555666655443332222223333 346666543 33445666666664 35676654 333
Q ss_pred C----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 379 S----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 379 ~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
. .+.+..|..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 2 34456778888874 999999999988753
No 121
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=50.16 E-value=92 Score=24.66 Aligned_cols=104 Identities=11% Similarity=-0.016 Sum_probs=63.8
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCe-eEEeCCCCChHHHHh---hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEE
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH---DYKVFLNPS-TTDVVCTATAEALAM-----GKIVV 373 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~-~~~~~~~~~~~~l~~---~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI 373 (562)
.+++++.+.+. .+.++...++.|.. +.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEE
Confidence 56677766433 46666666766654 332322222223332 357777543 344567888888764 56776
Q ss_pred ee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 374 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 374 ~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.. .... .+.+..|..+++.. +++++.++|..++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 65 3333 34566788888874 999999999998864
No 122
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=49.57 E-value=81 Score=25.71 Aligned_cols=105 Identities=11% Similarity=0.006 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-------cCCcE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-------MGKIV 372 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-------~G~PV 372 (562)
..+++++.+.+. .+.++...+..|..+.......+..+.+. ..|++++-- ..+.-|..+++.+. ..+||
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pi 93 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 93 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeE
Confidence 467777776433 45566666666655544433223333443 357777643 34455777877764 23676
Q ss_pred EeeCC-CC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 373 VCANH-PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 373 I~t~~-~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
|.... .. .+....|..+++.. +.+++.++|.++...
T Consensus 94 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 94 VVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 66533 33 34456678888874 999999999987643
No 123
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=49.55 E-value=55 Score=31.90 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=51.2
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++++++-+-+ .+.+..++.+++.+. .+ +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~~l~av~d-~~~~~~~~~a~~~g~--~~---~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 25 ANPDLELVVIAD-PFIEGAQRLAEANGA--EA---VASPDEVFARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp HCTTEEEEEEEC-SSHHHHHHHHHTTTC--EE---ESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred hCCCcEEEEEEC-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECC
Confidence 356888876654 456667777777763 22 367888888 789888877655555667899999999998754
No 124
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=49.21 E-value=79 Score=25.45 Aligned_cols=104 Identities=6% Similarity=-0.044 Sum_probs=60.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc--CCcEEee-C
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-N 376 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVI~t-~ 376 (562)
..+++++.+.+. .+.+.......+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+.. ..|||.- .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 456777776433 35566666665655443332222223333 357766543 233356677777653 5676654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 332 44566778888874 89999999888764
No 125
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=49.09 E-value=23 Score=32.06 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=30.5
Q ss_pred hhhccCCeEEEEecccCCCcccccc-cHHHHHHHHHHcCCCeEEEEee
Q 008544 44 LMDRKQQHIAIFTTASLPWLTGTAV-NPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~~~P~~~G~a~-~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.|.-+++||++-.+.. +.+. ....+.+.|.+.| ++|+++.+
T Consensus 2 ~m~l~~k~I~lgiTGs-----~aa~~k~~~ll~~L~~~g-~eV~vv~T 43 (201)
T 3lqk_A 2 HMNFAGKHVGFGLTGS-----HCTYHEVLPQMERLVELG-AKVTPFVT 43 (201)
T ss_dssp -CCCTTCEEEEECCSC-----GGGGGGTHHHHHHHHHTT-CEEEEECS
T ss_pred CCCcCCCEEEEEEECh-----HHHHHHHHHHHHHHhhCC-CEEEEEEC
Confidence 3555668998877643 2244 5788999999998 99999977
No 126
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=48.75 E-value=19 Score=29.83 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=29.5
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeE-EEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRV-TLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eV-tvit~ 90 (562)
||++|+.+.. |+.+-.+...+.++..+.+.| |+| .|+-.
T Consensus 1 mk~~iiv~~~-p~~~~~~~~al~~a~a~~~~g-~~v~~vff~ 40 (130)
T 2hy5_A 1 MKFALQINEG-PYQHQASDSAYQFAKAALEKG-HEIFRVFFY 40 (130)
T ss_dssp CEEEEEECSC-TTTSTHHHHHHHHHHHHHHTT-CEEEEEEEC
T ss_pred CEEEEEEeCC-CCCcHHHHHHHHHHHHHHhcC-CeeCEEEEe
Confidence 5788887754 664444667788899999998 999 88855
No 127
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=48.35 E-value=1.2e+02 Score=26.98 Aligned_cols=94 Identities=16% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEE--eCCCCChHHHHh-----hcCEEEEccCCCCCcHH
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV--YPGRDHADPIFH-----DYKVFLNPSTTDVVCTA 361 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~--~~~~~~~~~l~~-----~adv~v~pS~~E~~~~~ 361 (562)
.++++++.+.++.. -++-++|.+.....++...+-+++++.. +...++.++.+. .++++|-+ +++
T Consensus 81 ~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~------~~~ 152 (196)
T 2q5c_A 81 FDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSG------KTV 152 (196)
T ss_dssp HHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEEC------HHH
T ss_pred hHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECC------HHH
Confidence 35667777766543 3677777655555555566666666554 333444443333 33555532 444
Q ss_pred HHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHH
Q 008544 362 TAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKAL 406 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll 406 (562)
.--|-..|+|.|--. .+.+++.+++.+++
T Consensus 153 ~~~A~~~Gl~~vli~----------------sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 153 TDEAIKQGLYGETIN----------------SGEESLRRAIEEAL 181 (196)
T ss_dssp HHHHHHTTCEEEECC----------------CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEe----------------cCHHHHHHHHHHHH
Confidence 555555665544332 24666766666654
No 128
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=48.32 E-value=55 Score=32.09 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=31.2
Q ss_pred CChHHHHhhcCEEEE--ccCCCC---CcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLN--PSTTDV---VCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~--pS~~E~---~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.+++++.+|+.++ |...|+ ++-..++.|--|.-+|-+..|+
T Consensus 186 ~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~ 233 (334)
T 3kb6_A 186 TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGK 233 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGG
T ss_pred cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccc
Confidence 567899999997765 333443 6777888888887778776654
No 129
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=48.23 E-value=56 Score=32.06 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+.++++++-+-+ .+.+..++.+++.+... +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 49 ~~~~~~l~av~d-~~~~~~~~~a~~~g~~~-----~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 49 AEPLTEVTAIAS-RRWDRAKRFTERFGGEP-----VEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp HCTTEEEEEEEE-SSHHHHHHHHHHHCSEE-----EESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCeEEEEEEc-CCHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 356888875554 45666777777777642 267788887 578888876655555567899999999998654
No 130
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=48.21 E-value=50 Score=32.38 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
++++++-+-+ .+.+..++.+++.+. .. +.+.++++. ..|+.+..+....-.-.+.+|+..|++|++-..
T Consensus 37 ~~~~lvav~d-~~~~~~~~~~~~~~~--~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 37 DRAELIDVCD-IDPAALKAAVERTGA--RG---HASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHHCC--EE---ESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCeEEEEEEc-CCHHHHHHHHHHcCC--ce---eCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 6788876654 456667777777775 22 467888887 678888776554445567889999999998654
No 131
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=48.04 E-value=69 Score=31.23 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
++++++-+-+ .+.+..++.+++++.. .+ +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 43 ~~~~lvav~d-~~~~~~~~~a~~~~~~-~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 114 (340)
T 1zh8_A 43 HLFEITAVTS-RTRSHAEEFAKMVGNP-AV---FDSYEELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKP 114 (340)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHHSSC-EE---ESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CceEEEEEEc-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCC
Confidence 6788877665 4567777777777752 22 467888887 478887776554445567799999999999643
No 132
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=48.03 E-value=98 Score=24.24 Aligned_cols=104 Identities=9% Similarity=-0.031 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCC-eeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVV 373 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l-~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI 373 (562)
..+++++.+.+. .+.++...+..+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 356677765332 3555666666555 2333332222223333 347766543 334457778888764 46766
Q ss_pred ee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 374 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 374 ~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.. .... .+.+..|..+++.. +.+++.+++..++.
T Consensus 84 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 84 MVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 54 4333 44556778888874 89999999988764
No 133
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=47.87 E-value=74 Score=25.02 Aligned_cols=105 Identities=7% Similarity=-0.040 Sum_probs=61.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEc-cCCCCCcHHHHHHHHc-----CCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALAM-----GKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma~-----G~PVI~t 375 (562)
.+++++.+.+. .+.++...+..|..+.......+..+.+. ..|+++.- ...+.-|..+++.+.. .+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 46677766433 46667777776665444443333334443 34766654 3345567778877653 4677765
Q ss_pred C-CCC---ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 376 N-HPS---NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 376 ~-~~~---~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
. ... .+.+..+..+++.. +.+++.+++......+
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 3 332 33445567777764 9999999999876543
No 134
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=47.40 E-value=77 Score=25.61 Aligned_cols=104 Identities=10% Similarity=0.021 Sum_probs=62.4
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCCChHHHHh------------hcCEEEEcc-CCCCCcHHHHHHHH
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH------------DYKVFLNPS-TTDVVCTATAEALA 367 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~------------~adv~v~pS-~~E~~~~~~lEAma 367 (562)
..+++++.+.+. ...++...+..+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 355667765332 4556666666665 3443443333444443 357776653 33445777888775
Q ss_pred -----cCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 368 -----MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 368 -----~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
..+|||.. .... .+.+..+..+++.. +.+++.++|..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35676654 3332 44556677888864 88999998888765
No 135
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=47.40 E-value=60 Score=31.31 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=48.6
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHH-hhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.++++++.+-+ .+.+..++.+++.+. ..+ +.+.++++ ...|+.+..+......-.+.+|+..|++|++-.
T Consensus 22 ~~~~~~~~~v~d-~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EK 93 (325)
T 2ho3_A 22 TSGEYQLVAIYS-RKLETAATFASRYQN-IQL---FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEK 93 (325)
T ss_dssp HTTSEEEEEEEC-SSHHHHHHHGGGSSS-CEE---ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred hCCCeEEEEEEe-CCHHHHHHHHHHcCC-CeE---eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCcEEEec
Confidence 345788775554 455666666666664 122 35677888 678988887765555566788999999999864
No 136
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.31 E-value=28 Score=33.39 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=58.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCC--CCChHHHHhhcCEEEEccCCCC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPG--RDHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~--~~~~~~l~~~adv~v~pS~~E~ 357 (562)
-.|-++.|..|+.-+..-...-+++++|.... .+.+++.++..|.. .++++| .+.....+..=|++|.....+
T Consensus 55 L~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~- 133 (305)
T 3iz6_A 55 LGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT- 133 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCccc-
Confidence 34555666666665554222356788898554 34566666666643 234555 222222345557777664322
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
=-.++.||...|+|||+- |..+ .+.+
T Consensus 134 d~qAI~EA~~lnIPtIALvDTnsdp~~V 161 (305)
T 3iz6_A 134 DHQPIKESALGNIPTIAFCDTDSPMRYV 161 (305)
T ss_dssp THHHHHHHHHHTCCEEEEECTTSCGGGC
T ss_pred chHHHHHHHHcCCCEEEEEcCCCCcccc
Confidence 256899999999999987 5555 4444
No 137
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=46.84 E-value=35 Score=30.72 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=38.5
Q ss_pred HHHhhcCEEEEccCCCCCcH--HHHHHHHcCCcEEeeCCCC--ccccc----cC-------Cc-eEeeCCHHHHHHHHHH
Q 008544 341 PIFHDYKVFLNPSTTDVVCT--ATAEALAMGKIVVCANHPS--NDFFK----QF-------PN-CRTYDGRNGFVEATLK 404 (562)
Q Consensus 341 ~l~~~adv~v~pS~~E~~~~--~~lEAma~G~PVI~t~~~~--~e~v~----~~-------~~-g~~~~d~~~la~~i~~ 404 (562)
-+...+|.+|... -++|+ .+.||+..|+||++-+..+ .+.+. ++ .. -.+++|++++.+.|.+
T Consensus 114 ~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 114 VLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 3445778666432 12443 3788999999999997543 22221 11 11 2235799999988875
Q ss_pred H
Q 008544 405 A 405 (562)
Q Consensus 405 l 405 (562)
.
T Consensus 192 ~ 192 (195)
T 1rcu_A 192 I 192 (195)
T ss_dssp C
T ss_pred H
Confidence 4
No 138
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=46.68 E-value=61 Score=25.94 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCCeeEE-eCC----CCCh-HHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceE
Q 008544 317 DQIQRAAKKLKLVVRV-YPG----RDHA-DPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCR 390 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~-~~~----~~~~-~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~ 390 (562)
+.|++.++++|.++.+ ..+ .+.+ ++-+..+|++|+.+-.+.-. .| =..|+||+-++.. +.+
T Consensus 23 eaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~---~~-RF~gk~v~~~~v~--~~i------- 89 (106)
T 2m1z_A 23 QALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRN---KE-RFDGKVVLEVPVS--API------- 89 (106)
T ss_dssp HHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCST---HH-HHTTSEEEEECTT--HHH-------
T ss_pred HHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccc---hh-ccCCCcEEEEcHH--HHH-------
Confidence 7889999999998877 222 2333 37889999999887543211 12 2249999988763 122
Q ss_pred eeCCHHHHHHHHHHHHh
Q 008544 391 TYDGRNGFVEATLKALA 407 (562)
Q Consensus 391 ~~~d~~~la~~i~~ll~ 407 (562)
.|++++.+...+++.
T Consensus 90 --~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 90 --KDAEKVINAALALID 104 (106)
T ss_dssp --HCHHHHHHHHHHHHT
T ss_pred --HCHHHHHHHHHHHHh
Confidence 578888777776654
No 139
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=46.55 E-value=69 Score=26.33 Aligned_cols=108 Identities=8% Similarity=-0.096 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhc-CC-eeEEeCCCCChHHHHhh---cCEEEEccC-CCCCcHHHHHHHH---cCCcEE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKL-KL-VVRVYPGRDHADPIFHD---YKVFLNPST-TDVVCTATAEALA---MGKIVV 373 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l-~l-~~~~~~~~~~~~~l~~~---adv~v~pS~-~E~~~~~~lEAma---~G~PVI 373 (562)
..+++++.+.+. ...++...... +. .+.......+..+.+.. .|+++.-.. .+.-|..+++.+. ..+|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 356677765433 45566666665 54 23333433344445544 577766432 2334666666654 367877
Q ss_pred ee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCCC
Q 008544 374 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEPA 411 (562)
Q Consensus 374 ~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~~ 411 (562)
.- .... .+.+..|..+++.. +.+++.++|..++.....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 65 3322 44556677777764 899999999999876553
No 140
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.40 E-value=68 Score=25.88 Aligned_cols=106 Identities=9% Similarity=-0.028 Sum_probs=60.1
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHH---cCCcEEee-CC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALA---MGKIVVCA-NH 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma---~G~PVI~t-~~ 377 (562)
.+++++.+.+. .+.++...+..|..+.......+..+.+. ..|+++.-...+.-|..+++.+. ..+|||.- ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 46667765332 35566666666665544333333333333 34666654422224555565553 35777665 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.. .+.+..|..+++.. +.+++.++|..++....
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 85 VDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp CCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 33 34456677778764 89999999999887544
No 141
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=46.16 E-value=50 Score=25.31 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=57.8
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEEee-
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA- 375 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI~t- 375 (562)
+++++.+.+. .+.+.+..+..|..+.......+..+.+. ..|+.+.-. ..+.-+..+++.+. ..+|+|..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4566665332 35566666666665544433223333333 357666543 33445677777775 45676654
Q ss_pred CCCC-ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
+... .+.+..+..+++.. +.+++.+.+..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3332 34445566677653 88889888877654
No 142
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=45.56 E-value=98 Score=29.98 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=48.3
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEee
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCA 375 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t 375 (562)
+.++++++.+-+ .+.+..++.+++++.. .+ +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-
T Consensus 30 ~~~~~~~vav~d-~~~~~~~~~a~~~g~~-~~---~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 30 KIQGVKLVAACA-LDSNQLEWAKNELGVE-TT---YTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp TCSSEEEEEEEC-SCHHHHHHHHHTTCCS-EE---ESCHHHHHTTSCCSEEEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred cCCCcEEEEEec-CCHHHHHHHHHHhCCC-cc---cCCHHHHhcCCCCCEEEEeCChHhHHHHHHHHHHCCCEEEEc
Confidence 456788776655 4566667777776652 22 246778887 5898887765544455677899999999984
No 143
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=45.38 E-value=23 Score=29.77 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=30.0
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
++++|+.+.. |+.+-.+...+.++..+...| ++|.|+-.
T Consensus 6 kk~~ivv~~~-P~g~~~~~~al~~a~a~~a~~-~~v~Vff~ 44 (136)
T 2hy5_B 6 KKFMYLNRKA-PYGTIYAWEALEVVLIGAAFD-QDVCVLFL 44 (136)
T ss_dssp CEEEEEECSC-TTTSSHHHHHHHHHHHHGGGC-CEEEEEEC
T ss_pred hEEEEEEeCC-CCCcHHHHHHHHHHHHHHhCC-CCEEEEEE
Confidence 4699988754 775555666788888888887 99999855
No 144
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=44.74 E-value=95 Score=30.44 Aligned_cols=72 Identities=8% Similarity=0.138 Sum_probs=50.1
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCe--eEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLV--VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
..++++++.+-+ .+.+..++.+++.+.. ..+ +.+.++++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 27 ~~~~~~lv~v~d-~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 27 LAPNATISGVAS-RSLEKAKAFATANNYPESTKI---HGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp HCTTEEEEEEEC-SSHHHHHHHHHHTTCCTTCEE---ESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCCCCee---eCCHHHHhcCCCCCEEEEcCChHHHHHHHHHHHHCCCeEEEec
Confidence 356788876665 4566667777777741 222 356778887 58988887765555556778999999999853
No 145
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=44.62 E-value=88 Score=30.13 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
++++++.+-+ .+.+..++.+++.+.. ..+.+.++++. ..|+++..+......-.+.+|+..|++|++-.
T Consensus 23 ~~~~~vav~d-~~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ek 93 (332)
T 2glx_A 23 TGGEVVSMMS-TSAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEK 93 (332)
T ss_dssp TTCEEEEEEC-SCHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeC
Confidence 5788775554 4556666777776642 12467788887 48988887665554556778999999999843
No 146
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=44.32 E-value=25 Score=32.92 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCC--CCChHHHHhhcCEEEEccCCCC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPG--RDHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~--~~~~~~l~~~adv~v~pS~~E~ 357 (562)
-.|-+..|..|+.-+..-...-.+.++|.... ...+.+.++..|.. -+|.+| .+....-+..=|++|..... .
T Consensus 50 L~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~-~ 128 (252)
T 3u5c_A 50 VGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPR-S 128 (252)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCc-c
Confidence 34555666666665543212356788898654 35566667766643 234555 12222334455776666432 1
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
=-.++.||...|+|||+- |..+ .+.+
T Consensus 129 d~~ai~EA~~l~IP~Ial~DTn~~p~~V 156 (252)
T 3u5c_A 129 DAQAIKEASYVNIPVIALTDLDSPSEFV 156 (252)
T ss_dssp THHHHHHHHTTTCCEEEEECTTCCCTTC
T ss_pred chHHHHHHHHcCCCEEEEEcCCCCcccC
Confidence 256899999999999986 5554 4443
No 147
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=44.25 E-value=1.2e+02 Score=24.27 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=58.7
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NH 377 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~ 377 (562)
+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+. ...|||.. ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5677776554 35555555555554433332222223333 457777643 23345667777664 35676654 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.. .+.+..|..+++.. +.+++...|..++.
T Consensus 86 ~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 32 44556678888874 88999988887764
No 148
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=43.89 E-value=94 Score=24.96 Aligned_cols=102 Identities=6% Similarity=-0.082 Sum_probs=53.3
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI~t 375 (562)
.+++|+.+.+. .+.+++..+.. ..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 45666665332 34444444443 33333332222223332 347666543 33444666666665 46777654
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..|..+++.. +.+++.++|..++.
T Consensus 83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 3322 45566677888874 99999999998875
No 149
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=43.04 E-value=84 Score=30.40 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+++++-+.+ .+.+..++.+++.+... .+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 28 ~~~l~av~d-~~~~~a~~~a~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP 98 (334)
T 3ohs_X 28 EHQVVAVAA-RDLSRAKEFAQKHDIPK----AYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKP 98 (334)
T ss_dssp TEEEEEEEC-SSHHHHHHHHHHHTCSC----EESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEEEc-CCHHHHHHHHHHcCCCc----ccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence 467776665 45677777777777531 1467888888 588888876554445567899999999998754
No 150
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=42.93 E-value=1.6e+02 Score=25.16 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHh----hcC-EEEEccCCCCCcHHHHHHH-HcCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEAL-AMGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAm-a~G~PVI~t~~~---~~e---- 381 (562)
+.+++.+.++|+.+.++....+-+ +.++ .+| +.++|--+--.+.++.+|+ +.++|+|---.. .+|
T Consensus 39 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh 118 (153)
T 3lwz_A 39 SQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRH 118 (153)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhh
Confidence 344555556666655554433222 3333 345 7889987767899999997 568999876333 244
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.++. -.+...-+++.++
T Consensus 119 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 119 HSYLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred cccccccceEEEEecChhHHHHHHHHHH
Confidence 444556778775 5555555555443
No 151
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=42.91 E-value=1.2e+02 Score=23.95 Aligned_cols=103 Identities=10% Similarity=0.016 Sum_probs=59.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPST-TDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+++.--. .+.-|..+++.+. .+.|+|.- .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 45666665333 35556666666655443332222223333 3577766432 3334666666653 35776654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 332 44556788888874 89999999988764
No 152
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=42.82 E-value=57 Score=29.98 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCC---C----HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCC----
Q 008544 288 YEELLGLLNIYHKELAGLEMDLYGNGE---D----FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTD---- 356 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~~~l~ivG~g~---~----~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E---- 356 (562)
++.+.+++..+.+. +-++.++..+. + ...+.+..+++|.++....-.++..+.+..+|..++|- .+
T Consensus 17 l~~~~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~ 93 (229)
T 1fy2_A 17 LEHALPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQL 93 (229)
T ss_dssp TTTTHHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHH
T ss_pred HHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHH
Confidence 33445555555443 56777776642 2 24456666778876655443455658889999999995 22
Q ss_pred -------CCcHHHHHHHHcCCcEEeeCCCC
Q 008544 357 -------VVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 357 -------~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
++--.+-|+...|+|++.+-.|.
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 94 LKESRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHHHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 24445778888999999998774
No 153
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=42.47 E-value=1.3e+02 Score=24.49 Aligned_cols=104 Identities=9% Similarity=-0.007 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCe--eEEeCCCCChHHHHh---------hcCEEEEccC-CCCCcHHHHHHHHc--
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLV--VRVYPGRDHADPIFH---------DYKVFLNPST-TDVVCTATAEALAM-- 368 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~--~~~~~~~~~~~~l~~---------~adv~v~pS~-~E~~~~~~lEAma~-- 368 (562)
..+++++.+.+. .+.++...+..+.. +.......+..+.+. ..|++++--. .+.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 456777776433 35556666655542 222222222334443 3677776432 33456777777753
Q ss_pred ---CCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 369 ---GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 369 ---G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.+|||.- .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4676654 3332 44456778888874 88999988887653
No 154
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=42.25 E-value=1.4e+02 Score=24.33 Aligned_cols=107 Identities=15% Similarity=-0.007 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEE--eCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRV--YPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~--~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~ 374 (562)
..+++|+.+.+. .+.++....+.+....+ .....+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||.
T Consensus 15 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 94 (152)
T 3eul_A 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLL 94 (152)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred eEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEE
Confidence 456666665332 34455555555532111 222222223332 356666543 344556677766643 466665
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 4 3333 35566778888874 89999999999987654
No 155
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=41.88 E-value=1.2e+02 Score=23.33 Aligned_cols=103 Identities=9% Similarity=-0.044 Sum_probs=56.6
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH--cCCcEEee-CCC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 378 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVI~t-~~~ 378 (562)
++.++.+.+. .+.++......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|+|.. ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 3555554332 34555555555554433322222222222 357766543 23334566666553 56777654 333
Q ss_pred C----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 379 S----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 379 ~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
. .+.+..|..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 2 33456677888874 899999999887754
No 156
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=41.67 E-value=1.3e+02 Score=24.00 Aligned_cols=104 Identities=9% Similarity=-0.000 Sum_probs=63.5
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCC--eeEEeCCCCChHHHHh--------hcCEEEEcc-CCCCCcHHHHHHHH----
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKL--VVRVYPGRDHADPIFH--------DYKVFLNPS-TTDVVCTATAEALA---- 367 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l--~~~~~~~~~~~~~l~~--------~adv~v~pS-~~E~~~~~~lEAma---- 367 (562)
..+++++.+.+. .+.++...+..+. .+.......+..+.+. ..|+++.-. ..+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356777776433 4566666666665 4444444444444554 367776643 33445777888775
Q ss_pred -cCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 368 -MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 368 -~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
..+|||.. .... .+.+..|..+++.. +.+++.+++.....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 46776655 3332 45566777888864 89999988776544
No 157
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.57 E-value=28 Score=33.37 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe---eEEeCCC--CChHHHHhhcCEEEEccC-CC
Q 008544 284 WSKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV---VRVYPGR--DHADPIFHDYKVFLNPST-TD 356 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~---~~~~~~~--~~~~~l~~~adv~v~pS~-~E 356 (562)
-.|-...|.+|+.-+..-...-+++++|.... .+.+++.++..|.. .++++|. +.....+..=|+++.... .|
T Consensus 51 L~kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 51 LKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD 130 (295)
T ss_dssp HHHHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc
Confidence 34455666666666553223466888888554 34566666666654 2345551 111122345576666543 33
Q ss_pred CCcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 357 VVCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
-.++.||...|+|||+- |..+ .+.+
T Consensus 131 --~~AI~EA~~lgIPvIalvDTn~dp~~V 157 (295)
T 2zkq_b 131 --HQPLTEASYVNLPTIALCNTDSPLRYV 157 (295)
T ss_dssp --HHHHHHHHHHTCCEEEEECTTCCCTTC
T ss_pred --hhHHHHHHHhCCCEEEEecCCCCcccC
Confidence 57899999999999998 6655 4444
No 158
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=41.48 E-value=25 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=41.0
Q ss_pred EEEEeCCCC----HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHH
Q 008544 307 MDLYGNGED----FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA 367 (562)
Q Consensus 307 l~ivG~g~~----~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma 367 (562)
+++.|.|-. -+.+++.+++.|+++.+ ..+..+..+....+|+++..... .+-..-++..+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHh
Confidence 455566544 26788889999998877 56677788888999988876533 23444445544
No 159
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=41.33 E-value=1.2e+02 Score=23.34 Aligned_cols=102 Identities=5% Similarity=-0.082 Sum_probs=57.4
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NH 377 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~ 377 (562)
++.++.+.+. ...++......+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+. ...|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 3455554322 34555555655654433332222223333 347666542 23345677777765 35676654 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.. .+.+..|..+++.. +.+++...+..++.
T Consensus 82 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 33 44556778888874 89999999988764
No 160
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=40.98 E-value=83 Score=24.61 Aligned_cols=100 Identities=6% Similarity=-0.127 Sum_probs=59.3
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh-----hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEE
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH-----DYKVFLNPS-TTDVVCTATAEALA-----MGKIVV 373 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~-----~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI 373 (562)
+++++.+.+. .+.++...+..+..+.... +..+.+. ..|+++.-. ..+.-|..+++.+. ...|||
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~---~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAE---DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEC---SHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeC---CHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5666665433 3555666666665543322 2333322 347666543 23345677777775 356766
Q ss_pred ee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 374 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 374 ~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.- .... .+.+..|..+++.. +.+++.+++..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 54 3332 45566777888863 999999999988764
No 161
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=40.97 E-value=39 Score=31.86 Aligned_cols=39 Identities=18% Similarity=0.072 Sum_probs=27.9
Q ss_pred ccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecC
Q 008544 47 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWL 92 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~ 92 (562)
.++|||++..+-.. .+-.+..+++.|.+ + |+|+|++|..
T Consensus 9 ~~~m~ILlTNDDGi-----~apGi~aL~~~l~~-~-~~V~VVAP~~ 47 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-----YAKGLAILAKTLAD-L-GEVDVVAPDR 47 (261)
T ss_dssp --CCEEEEECSSCT-----TCHHHHHHHHHHTT-T-SEEEEEEESS
T ss_pred CCCCeEEEEcCCCC-----CCHHHHHHHHHHHh-c-CCEEEEecCC
Confidence 34589988887542 14457788899988 5 8999999944
No 162
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=40.90 E-value=81 Score=25.89 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHh-cCCeeE-EeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKK-LKLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~-l~l~~~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~ 374 (562)
..+++++.+.+. .+.++..... .+..+. ......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 356677765332 3445555444 343332 2222222223333 347766643 234456666666543 567665
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
. .... .+.+..|..+++.. +.+++.++|..++....
T Consensus 85 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 85 FTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp EESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred EECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 4 3332 44556778888874 88999999999886543
No 163
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=40.72 E-value=94 Score=24.50 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t- 375 (562)
..+++++.+.+. .+.+++..+..|..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||.-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 467777776443 45666667777765554333222323333 357776643 234456777776653 4676654
Q ss_pred CCCC----ccccccCCceEeeC---CHHHHHHHHHHHHhC
Q 008544 376 NHPS----NDFFKQFPNCRTYD---GRNGFVEATLKALAE 408 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~---d~~~la~~i~~ll~~ 408 (562)
.... .+.+..|..+++.. +.+++.+.+..++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 3333 44566788888863 788999999988864
No 164
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=40.44 E-value=1.3e+02 Score=29.96 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=61.9
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhc----CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcC
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKEL----AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYK 347 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~----~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~ad 347 (562)
..|..||-=... ...++++.++.... ++++++-+.+ .+.+..++.+++++.. ++ +.+.+++++ ..|
T Consensus 27 lrvgiIG~G~ig---~~h~~~~~~~~~~~~~~~~~~elvav~d-~~~~~a~~~a~~~~~~-~~---y~d~~~ll~~~~vD 98 (412)
T 4gqa_A 27 LNIGLIGSGFMG---QAHADAYRRAAMFYPDLPKRPHLYALAD-QDQAMAERHAAKLGAE-KA---YGDWRELVNDPQVD 98 (412)
T ss_dssp EEEEEECCSHHH---HHHHHHHHHHHHHCTTSSSEEEEEEEEC-SSHHHHHHHHHHHTCS-EE---ESSHHHHHHCTTCC
T ss_pred ceEEEEcCcHHH---HHHHHHHHhccccccccCCCeEEEEEEc-CCHHHHHHHHHHcCCC-eE---ECCHHHHhcCCCCC
Confidence 456666631111 13455555544332 2467776665 5677788888888764 22 367888887 467
Q ss_pred EEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 348 VFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 348 v~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
+++..+....-.-.+.+|+.+|++|+|-..
T Consensus 99 ~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 128 (412)
T 4gqa_A 99 VVDITSPNHLHYTMAMAAIAAGKHVYCEKP 128 (412)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred EEEECCCcHHHHHHHHHHHHcCCCeEeecC
Confidence 777776555556678999999999999765
No 165
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=40.41 E-value=1.3e+02 Score=23.54 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh---hcCEEEEcc-CCC-CCcHHHHHHHH---cCCcEEe
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH---DYKVFLNPS-TTD-VVCTATAEALA---MGKIVVC 374 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~---~adv~v~pS-~~E-~~~~~~lEAma---~G~PVI~ 374 (562)
..+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-. ..+ .-|..+++.+. ..+|||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 466777776433 35566666666765544333333333443 357766543 333 45667777664 3677765
Q ss_pred e-CCCCccccccC--CceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 375 A-NHPSNDFFKQF--PNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 375 t-~~~~~e~v~~~--~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
. .....+..... .++++.. +.+++.++|.+++....
T Consensus 85 ~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCC
Confidence 5 33332221111 1256653 89999999999887654
No 166
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=40.30 E-value=1.3e+02 Score=23.29 Aligned_cols=102 Identities=10% Similarity=-0.053 Sum_probs=58.5
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH--cCCcEEee-CCC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 378 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVI~t-~~~ 378 (562)
+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 4566665332 35556666655655443333222223333 357666543 23345677777764 35676654 333
Q ss_pred C----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 379 S----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 379 ~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
. .+.+..|..+++.. +.+++..++..++.
T Consensus 84 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 3 34456677888864 89999999988764
No 167
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=40.05 E-value=42 Score=31.34 Aligned_cols=43 Identities=16% Similarity=-0.020 Sum_probs=26.4
Q ss_pred hhccCCeEEEEecccC------CCcccccccHHHHH---HHHHHcCCCeEEEEee
Q 008544 45 MDRKQQHIAIFTTASL------PWLTGTAVNPLFRA---AYLAKDGERRVTLVIP 90 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~------P~~~G~a~~~~~la---~~L~~~Gg~eVtvit~ 90 (562)
|....+||+|+.+... .+.+|. ...+++ ..|.+.| ++|+++++
T Consensus 5 m~~~mkkvlvvlt~~~~~~~~~g~~tG~--~~~E~~~p~~~l~~aG-~~V~~aSp 56 (247)
T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGL--FFSEALHPFNELTAAG-FEVDVASE 56 (247)
T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCB--CHHHHHHHHHHHHHTT-CEEEEEES
T ss_pred ccccCCeEEEEECCCCcccCCCCCCCcc--cHHHHHHHHHHHHHCC-CEEEEEeC
Confidence 4333478999987642 122353 333333 6777776 99999998
No 168
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=39.56 E-value=35 Score=31.04 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=27.8
Q ss_pred ccCCeEEEEecccCCCccccccc--HHHHHHHHHHcCCCeEEEEee
Q 008544 47 RKQQHIAIFTTASLPWLTGTAVN--PLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~~~G~a~~--~~~la~~L~~~Gg~eVtvit~ 90 (562)
-+++||++-.+.. + +.+ ...+.+.|.+.| ++|.++.+
T Consensus 3 l~~k~IllgiTGs-----i-aayk~~~~ll~~L~~~g-~eV~vv~T 41 (207)
T 3mcu_A 3 LKGKRIGFGFTGS-----H-CTYEEVMPHLEKLIAEG-AEVRPVVS 41 (207)
T ss_dssp CTTCEEEEEECSC-----G-GGGTTSHHHHHHHHHTT-CEEEEEEC
T ss_pred CCCCEEEEEEECh-----H-HHHHHHHHHHHHHHhCC-CEEEEEEe
Confidence 3447888877642 2 444 678899999998 99999977
No 169
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=39.45 E-value=1.1e+02 Score=28.46 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=44.6
Q ss_pred EEEEEeC-CCCHHHHHHHHHhc-CCeeEE-eCCCCChHHHHh-hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 306 EMDLYGN-GEDFDQIQRAAKKL-KLVVRV-YPGRDHADPIFH-DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 306 ~l~ivG~-g~~~~~l~~~~~~l-~l~~~~-~~~~~~~~~l~~-~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
++.++|. |..-..+.+.+.+. +.++.. ....++.++++. .+|+.|--|..+..--.+..|+..|+|+|+...|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5667774 65544444444433 444432 333456666665 7899995555555544455678999999886554
No 170
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=39.18 E-value=91 Score=25.27 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=41.3
Q ss_pred hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 345 DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
..|++++-. ..+.-|+.+++.+.. ..|||.- .... .+.+..|..+++.. +.++|..+|..++...
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 457666543 233345666665543 5676654 3332 34556677788864 9999999999988754
No 171
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.15 E-value=62 Score=27.76 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=38.2
Q ss_pred HHHhhcCEEEEccC--CCCCcHHHHHHHHcCCcEEe-eCCCC----ccccccCCc---e--EeeCCHHHHHHHHHHHHhC
Q 008544 341 PIFHDYKVFLNPST--TDVVCTATAEALAMGKIVVC-ANHPS----NDFFKQFPN---C--RTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 341 ~l~~~adv~v~pS~--~E~~~~~~lEAma~G~PVI~-t~~~~----~e~v~~~~~---g--~~~~d~~~la~~i~~ll~~ 408 (562)
+.+..||++|.--. ..|.+.-+-=|.+.|+||++ .+... .-.+....+ - ..+.+ +++.+.|.+.++.
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~~ 142 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFEA 142 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC-
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHHh
Confidence 67889998776422 22333334557899999999 33221 212222222 1 22456 7787777777654
No 172
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=39.04 E-value=1.5e+02 Score=26.94 Aligned_cols=104 Identities=7% Similarity=-0.115 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t- 375 (562)
..+++|+-+.+. .+.+....+..+..+.......+..+.+. ..|++++-- ..+.-|+.+++.+.. ..|||.-
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 456666665332 34555555555554433322222223332 357666543 334457777777643 5676654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..|..+++.. +.+++..+|..++.
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3333 44567788888874 89999999998875
No 173
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=38.86 E-value=1.3e+02 Score=30.18 Aligned_cols=74 Identities=14% Similarity=0.045 Sum_probs=51.6
Q ss_pred hcCCcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh-------cCEEEEccCCCCCcHHHHHHHHcCCcE
Q 008544 301 ELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD-------YKVFLNPSTTDVVCTATAEALAMGKIV 372 (562)
Q Consensus 301 ~~~~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~-------adv~v~pS~~E~~~~~~lEAma~G~PV 372 (562)
..++++++. +-+ .+.+..++.+++++... -..+.+.++++.. .|+++..+....-.-.+.+|+..|++|
T Consensus 61 ~~~~~~lva~v~d-~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhV 137 (417)
T 3v5n_A 61 LDDHYELVAGALS-STPEKAEASGRELGLDP--SRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHV 137 (417)
T ss_dssp HTSCEEEEEEECC-SSHHHHHHHHHHHTCCG--GGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEE
T ss_pred hCCCcEEEEEEeC-CCHHHHHHHHHHcCCCc--ccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeE
Confidence 345677764 433 45677778888777531 0125678888887 898888776555566688999999999
Q ss_pred EeeCC
Q 008544 373 VCANH 377 (562)
Q Consensus 373 I~t~~ 377 (562)
+|-..
T Consensus 138 l~EKP 142 (417)
T 3v5n_A 138 ICDKP 142 (417)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98754
No 174
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=38.80 E-value=36 Score=28.00 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=27.2
Q ss_pred ccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeec
Q 008544 47 RKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPW 91 (562)
Q Consensus 47 ~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~ 91 (562)
+.+++|++|..+--|..-| ....++|.+.| ++|+-+.|.
T Consensus 2 ~~p~siAVVGaS~~~~~~g-----~~v~~~L~~~g-~~V~pVnP~ 40 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYA-----YLAAERLKSHG-HEFIPVGRK 40 (122)
T ss_dssp CCCCCEEEETCCSCTTSHH-----HHHHHHHHHHT-CCEEEESSS
T ss_pred CCCCEEEEEccCCCCCCHH-----HHHHHHHHHCC-CeEEEECCC
Confidence 3458999998765553322 35558888887 898888763
No 175
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=38.66 E-value=20 Score=37.10 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeec
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPW 91 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~ 91 (562)
+.||+++.. |. .|--.-.+.+++.|+++| |+||++++.
T Consensus 8 ~~~vl~~p~---p~-~GHi~P~l~La~~L~~rG-~~VT~v~t~ 45 (482)
T 2pq6_A 8 KPHVVMIPY---PV-QGHINPLFKLAKLLHLRG-FHITFVNTE 45 (482)
T ss_dssp CCEEEEECC---SS-HHHHHHHHHHHHHHHHTT-CEEEEEEEH
T ss_pred CCEEEEecC---cc-chhHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 368988863 32 454555788999999998 999999873
No 176
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=38.52 E-value=1.2e+02 Score=30.22 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=52.1
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeC----------CCCChHHHHhhcCEEEE--ccCCC-------CCcHHHHH
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFLN--PSTTD-------VVCTATAE 364 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~----------~~~~~~~l~~~adv~v~--pS~~E-------~~~~~~lE 364 (562)
+-++-|+|-|.--..+-+.++.+|.++..+. ...+.+++++.+|+.++ |...+ -+.-..++
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~ 198 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIR 198 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHH
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHh
Confidence 4577888887666666666777777666542 24567799999997775 33333 35566888
Q ss_pred HHHcCCcEEeeCCCC
Q 008544 365 ALAMGKIVVCANHPS 379 (562)
Q Consensus 365 Ama~G~PVI~t~~~~ 379 (562)
.|--|.-+|-+..|+
T Consensus 199 ~mk~gailIN~aRG~ 213 (381)
T 3oet_A 199 RLKPGAILINACRGP 213 (381)
T ss_dssp HSCTTEEEEECSCGG
T ss_pred cCCCCcEEEECCCCc
Confidence 888888787776654
No 177
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=38.22 E-value=2.1e+02 Score=25.26 Aligned_cols=104 Identities=10% Similarity=-0.060 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
..+++++.+.+. .+.+.......+..+.......+..+.+. ..|++++-- ..+.-|..+++.+. ..+|||.-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356777776443 45566666666665443332222223333 357776543 33445777777764 46787655
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..|..+++.. +++++.++|..++.
T Consensus 87 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3322 55566778888874 89999999988764
No 178
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=38.07 E-value=48 Score=26.67 Aligned_cols=105 Identities=8% Similarity=-0.004 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcC-CeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEee
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLK-LVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVVCA 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~-l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~t 375 (562)
..+++++.+.+. .+.++...+..+ ..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.-
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE
Confidence 356777776433 466666677766 55544333233322232 357666542 233345555555443 5777655
Q ss_pred -CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 376 -NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 376 -~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.... .+.+..|..+++.. +++++..+|..++..
T Consensus 94 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 94 SDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred eCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 3333 44556778888874 999999999987653
No 179
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=37.80 E-value=46 Score=33.88 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=50.4
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCee-EEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVV-RVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~-~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.++++++.+-+ .+.+..++.+++.+... .+ ..+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 105 ~~~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~-~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 105 GCQHSRIEALVS-GNAEKAKIVAAEYGVDPRKI-YDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp TCSSEEEEEEEC-SCHHHHHHHHHHTTCCGGGE-ECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred hCCCcEEEEEEc-CCHHHHHHHHHHhCCCcccc-cccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcC
Confidence 356788876665 45666677777777531 00 12456777787 68988887765555666789999999999854
No 180
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.79 E-value=2.2e+02 Score=26.39 Aligned_cols=65 Identities=12% Similarity=-0.096 Sum_probs=37.1
Q ss_pred hcCEEE-EccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEe-eCCHHHHHHHHHHHHhCC
Q 008544 345 DYKVFL-NPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALAEE 409 (562)
Q Consensus 345 ~adv~v-~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~-~~d~~~la~~i~~ll~~~ 409 (562)
..|.+| .|...+...-.+-++...|+|||+.+......-......++ .++.+.-..+.+.+++.-
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 127 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELT 127 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhc
Confidence 567555 45445555556677888999999998754221001122333 456655555556565543
No 181
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=37.68 E-value=1.1e+02 Score=29.87 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=48.0
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+.++++++-+-+. +.+..+ .+++.+. ..+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 25 ~~~~~~~l~av~d~-~~~~~~-~a~~~g~-----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP 97 (359)
T 3e18_A 25 SAADNLEVHGVFDI-LAEKRE-AAAQKGL-----KIYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKP 97 (359)
T ss_dssp HTSTTEEEEEEECS-SHHHHH-HHHTTTC-----CBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred HhCCCcEEEEEEcC-CHHHHH-HHHhcCC-----ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCC
Confidence 34568888766553 344433 4455554 23578889998 778888776555545567899999999998654
No 182
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=37.67 E-value=2.1e+02 Score=25.14 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=60.7
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+. ..+|||.- .
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 35666665433 35556666666655443332222223333 357766543 33445677777764 36777765 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +++++.++|..++.
T Consensus 83 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 332 45566778888874 89999999998875
No 183
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=37.49 E-value=51 Score=26.59 Aligned_cols=102 Identities=9% Similarity=0.047 Sum_probs=61.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh-----hcCEEEEcc-CCC--CCcHHHHHHHHc---CCcE
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH-----DYKVFLNPS-TTD--VVCTATAEALAM---GKIV 372 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~-----~adv~v~pS-~~E--~~~~~~lEAma~---G~PV 372 (562)
.+++|+.+.+. .+.++...+..+..+.... +..+.+. ..|+++.-. ..+ .-|..+++.+.. .+||
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFA---SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 56777776433 3556666666665544333 2333332 346666543 344 456677776653 5676
Q ss_pred Eee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 373 VCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 373 I~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
|.- .... .+.+..|..+++.. +.+++.++|.+++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 655 3333 44566788888874 9999999999987643
No 184
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=37.46 E-value=1.2e+02 Score=24.03 Aligned_cols=81 Identities=11% Similarity=0.149 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCeeEE-eCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHH--cCCcEEeeCCCCccccccCCceEee
Q 008544 316 FDQIQRAAKKLKLVVRV-YPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALA--MGKIVVCANHPSNDFFKQFPNCRTY 392 (562)
Q Consensus 316 ~~~l~~~~~~l~l~~~~-~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma--~G~PVI~t~~~~~e~v~~~~~g~~~ 392 (562)
.+.+++.+++.++++.+ ..+..+..+.+..+|+++.+...... ..-++..+ .++||+.-+.-... .
T Consensus 21 ~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~~~~y~----------~ 89 (109)
T 2l2q_A 21 VQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIINTIDYG----------T 89 (109)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECCHHHHH----------H
T ss_pred HHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEChHHhc----------c
Confidence 37788888888887666 45667777778899988887643222 33444433 58999876441100 1
Q ss_pred CCHHHHHHHHHHHHh
Q 008544 393 DGRNGFVEATLKALA 407 (562)
Q Consensus 393 ~d~~~la~~i~~ll~ 407 (562)
-|.+++.+.+.+++.
T Consensus 90 ~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 90 MNGEKVLQLAINAFN 104 (109)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 377777777777665
No 185
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=36.95 E-value=34 Score=31.82 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCe-e---EEeCCC--CChHHHHhhcCEEEEccCCCC
Q 008544 285 SKGYEELLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLV-V---RVYPGR--DHADPIFHDYKVFLNPSTTDV 357 (562)
Q Consensus 285 ~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~-~---~~~~~~--~~~~~l~~~adv~v~pS~~E~ 357 (562)
.|-+..|.+|+.-+..-...-+++++|.... .+.+++.++..|.. + ++++|. +.....+..=|+++..... .
T Consensus 47 ~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~-~ 125 (241)
T 2xzm_B 47 EETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR-S 125 (241)
T ss_dssp HHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT-T
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC-c
Confidence 4445566666665554222456788898554 24455556655543 2 466662 1111334445766665432 2
Q ss_pred CcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 358 VCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 358 ~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
-..++.||...|+|||+- |..+ .+.+
T Consensus 126 e~~ai~EA~~l~IPvIalvDTn~~p~~V 153 (241)
T 2xzm_B 126 DFQAIKEASYVNIPVIALCDSDSPLAYV 153 (241)
T ss_dssp THHHHHHHTTTTCCEEECCCSSSCCTTC
T ss_pred chHHHHHHHHhCCCEEEEecCCCCcccc
Confidence 257899999999999998 5544 4443
No 186
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=36.94 E-value=68 Score=27.10 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhh----cC-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD----YK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~----ad-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.++++|..+.++....+-+ +.+++ +| +.++|--+--.+.++.+|++ .++|+|---.. .+|
T Consensus 32 ~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 111 (143)
T 1gqo_A 32 TDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRH 111 (143)
T ss_dssp HHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 455666677777776655433333 44443 44 78899877778999999976 57898865332 244
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKAL 406 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll 406 (562)
++.+-..|.++. -.+...-+++.++
T Consensus 112 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 112 QSVIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHH
Confidence 445556778875 6666666666654
No 187
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=36.82 E-value=1.8e+02 Score=26.09 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=64.9
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc--CCcEEee-CC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-NH 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVI~t-~~ 377 (562)
.+++|+.+.+. .+.++...+..+..+.......+..+.+. ..|++++-- ..+.-|..+++.+.. .+|||.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 46777776443 45666666666666544444344444443 357776643 334456777777653 6787654 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
.. .+.+..|..+++.. +++++.++|..++...
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 44556778888863 9999999999987653
No 188
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=36.61 E-value=2.2e+02 Score=26.13 Aligned_cols=61 Identities=10% Similarity=-0.092 Sum_probs=33.7
Q ss_pred hcCEEEE-ccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 345 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 345 ~adv~v~-pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
..|.+|+ |...+...-.+-++...|+|||..+...... +....+..++.+....+.+.+++
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD--AVVSSITSNNQMIGEQLASYIKN 125 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCCT--TCSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCCC--cceeEEecCHHHHHHHHHHHHHH
Confidence 5675444 4444444344556678899999997754210 11223334666655555555554
No 189
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=36.27 E-value=1.4e+02 Score=22.70 Aligned_cols=101 Identities=8% Similarity=0.062 Sum_probs=56.5
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NH 377 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~ 377 (562)
+++++.+.+. .+.++......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|+|.- ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4556665332 35556666666655443333222223333 357666543 23345666776664 35676644 33
Q ss_pred CC--ccccccCCceEeeC--CHHHHHHHHHHHH
Q 008544 378 PS--NDFFKQFPNCRTYD--GRNGFVEATLKAL 406 (562)
Q Consensus 378 ~~--~e~v~~~~~g~~~~--d~~~la~~i~~ll 406 (562)
.. .+....+..+++.. +.+++..++..++
T Consensus 83 ~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 32 45556677788864 8889999888764
No 190
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=36.26 E-value=1.4e+02 Score=29.67 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=50.0
Q ss_pred hcCCcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhh-------cCEEEEccCCCCCcHHHHHHHHcCCcE
Q 008544 301 ELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHD-------YKVFLNPSTTDVVCTATAEALAMGKIV 372 (562)
Q Consensus 301 ~~~~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~-------adv~v~pS~~E~~~~~~lEAma~G~PV 372 (562)
..++++++. +- ..+.+..++.++++++.. -..+.+.++++.. .|+++..+....-.-.+.+|+..|++|
T Consensus 36 ~~~~~~lva~v~-d~~~~~a~~~a~~~g~~~--~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhV 112 (398)
T 3dty_A 36 RDNTFVLVAGAF-DIDPIRGSAFGEQLGVDS--ERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHV 112 (398)
T ss_dssp GGGSEEEEEEEC-CSSHHHHHHHHHHTTCCG--GGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEE
T ss_pred hCCCeEEEEEEe-CCCHHHHHHHHHHhCCCc--ceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeE
Confidence 345677764 33 356777788888877531 0125678888886 898777765555456688999999999
Q ss_pred EeeC
Q 008544 373 VCAN 376 (562)
Q Consensus 373 I~t~ 376 (562)
+|-.
T Consensus 113 l~EK 116 (398)
T 3dty_A 113 VCEK 116 (398)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9853
No 191
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=36.15 E-value=1.5e+02 Score=22.95 Aligned_cols=104 Identities=8% Similarity=-0.120 Sum_probs=58.3
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+.+.-- ..+.-|..+++.+. ...|||.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 35666665332 35555656655654433322222223332 357776543 23334666666654 46777654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
... .+.+..|..+++.. +.+++.+++..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 333 34455677788764 899999999887653
No 192
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=36.07 E-value=2.7e+02 Score=25.95 Aligned_cols=116 Identities=9% Similarity=0.018 Sum_probs=72.9
Q ss_pred EEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCC-----------CC---HHHHHHHHHhcCCeeEE-eCCCCChHHH
Q 008544 278 YIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNG-----------ED---FDQIQRAAKKLKLVVRV-YPGRDHADPI 342 (562)
Q Consensus 278 ~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g-----------~~---~~~l~~~~~~l~l~~~~-~~~~~~~~~l 342 (562)
.+.........+..++.+..+++.. +.++..+.- .. ...+++.+++.|+.+.- .....+.+.+
T Consensus 26 vIAgpc~~~~~e~a~~~a~~l~~~G--a~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l 103 (262)
T 1zco_A 26 IIAGPCSIESREQIMKVAEFLAEVG--IKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELV 103 (262)
T ss_dssp EEEECSBCCCHHHHHHHHHHHHHTT--CCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcC--CCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHH
Confidence 4445566778888888888887753 444444431 11 25667777888876443 2223334444
Q ss_pred HhhcCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 343 FHDYKVFLNPSTTDVVCTATAEALA-MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 343 ~~~adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
....|++=.+|.. .....+++++| .|+||+.++..+ .+.+++.+++..+.+.-
T Consensus 104 ~~~vd~~kIga~~-~~n~~ll~~~a~~~kPV~lk~G~~-------------~t~~e~~~Av~~i~~~G 157 (262)
T 1zco_A 104 AKYSDILQIGARN-SQNFELLKEVGKVENPVLLKRGMG-------------NTIQELLYSAEYIMAQG 157 (262)
T ss_dssp HHHCSEEEECGGG-TTCHHHHHHHTTSSSCEEEECCTT-------------CCHHHHHHHHHHHHTTT
T ss_pred HhhCCEEEECccc-ccCHHHHHHHHhcCCcEEEecCCC-------------CCHHHHHHHHHHHHHCC
Confidence 4458999888852 33455555555 799999986632 27788888888777643
No 193
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=35.93 E-value=2e+02 Score=24.32 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHh----hcC-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFH----DYK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~----~ad-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.++++|..+.++....+-+ +.++ .+| +.++|--+--.+.++.+|++ .++|+|---.. .+|
T Consensus 34 ~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 113 (146)
T 1h05_A 34 ALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRR 113 (146)
T ss_dssp HHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 455666677777777655433332 3333 345 88899877778999999976 57899876332 244
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHHHh
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKALA 407 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~ll~ 407 (562)
++.+-..|.++. -.+...-+++.+++
T Consensus 114 ~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 142 (146)
T 1h05_A 114 HSYLSPIATGVIVGLGIQGYLLALRYLAE 142 (146)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred ccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 555567788875 66666666666553
No 194
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=35.87 E-value=1.7e+02 Score=23.39 Aligned_cols=104 Identities=10% Similarity=0.019 Sum_probs=58.1
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHH--------cCCcE
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--------MGKIV 372 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--------~G~PV 372 (562)
.+++++.+.+. .+.+....+..+..+.......+..+.+. ..|+++.--. .+.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 46777765332 34455555555554444432222223333 3577776532 3345667777664 24566
Q ss_pred Eee-CCCC-ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 373 VCA-NHPS-NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 373 I~t-~~~~-~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
|.. .... ......+..+++.. +.+++.++|..++..
T Consensus 91 i~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 554 3332 33335556778864 899999999998754
No 195
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=35.84 E-value=35 Score=32.65 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=24.9
Q ss_pred hhhccCCeEEEEecccCCCcccccccHHH-HHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTASLPWLTGTAVNPLF-RAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~~~P~~~G~a~~~~~-la~~L~~~Gg~eVtvit 89 (562)
.+..++|||+||... |...+....... ..+.|.+.| |+|+++-
T Consensus 17 ~~~m~~MKiLII~aH--P~~~S~n~aL~~~~~~~l~~~G-~eV~v~D 60 (280)
T 4gi5_A 17 NLYFQSMKVLLIYAH--PEPRSLNGALKNFAIRHLQQAG-HEVQVSD 60 (280)
T ss_dssp -----CCEEEEEECC--SCTTSHHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cchhhCCeEEEEEeC--CCCccHHHHHHHHHHHHHHHCC-CeEEEEE
Confidence 355566999999865 543332222222 337788887 9999984
No 196
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=35.63 E-value=24 Score=31.19 Aligned_cols=64 Identities=22% Similarity=0.123 Sum_probs=41.6
Q ss_pred HHhhcCEEE-EccCCCCCcH--HHHHHHHcCCcEEeeCCCC--ccccccC--CceEeeCCHHHHHHHHHHHHhC
Q 008544 342 IFHDYKVFL-NPSTTDVVCT--ATAEALAMGKIVVCANHPS--NDFFKQF--PNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 342 l~~~adv~v-~pS~~E~~~~--~~lEAma~G~PVI~t~~~~--~e~v~~~--~~g~~~~d~~~la~~i~~ll~~ 408 (562)
+...+|.+| +|. ++|+ .+.||+..++||++-+.-+ ..++.+. ..-.+++|++++.+.|.+.+..
T Consensus 104 m~~~sda~IvlpG---g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVAVGM---GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEEESC---CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEecC---CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 344677655 443 3443 4788899999999997632 2333222 2233458999999999988754
No 197
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=35.62 E-value=39 Score=26.95 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=29.0
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHc-CCC-eEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKD-GER-RVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~-Gg~-eVtvit~ 90 (562)
+|++|+.+.. |+....+...+.++..+.+. | + +|.|+-.
T Consensus 2 ~k~~ii~~~~-p~~~~~~~~al~~a~~~~~~~g-~~~v~vff~ 42 (117)
T 1jx7_A 2 QKIVIVANGA-PYGSESLFNSLRLAIALREQES-NLDLRLFLM 42 (117)
T ss_dssp CEEEEEECCC-TTTCSHHHHHHHHHHHHHHHCT-TCEEEEEEC
T ss_pred cEEEEEEcCC-CCCcHHHHHHHHHHHHHHhcCC-CccEEEEEE
Confidence 4788887765 65444456678888888888 8 8 9999865
No 198
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=35.21 E-value=44 Score=31.74 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=33.4
Q ss_pred CCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 336 RDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 336 ~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.++.++++..+|+.|--+..+..---+..|+..|+|+|+...|
T Consensus 64 ~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG 106 (272)
T 4f3y_A 64 TDDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG 106 (272)
T ss_dssp BCCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred cCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4677888999999997776555445567889999999987654
No 199
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=34.87 E-value=82 Score=30.23 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=44.8
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.++++++.+-+. +.+..++.+++.+.. .+++.+++-...|+++..+....-.-.+.+|+..|++|++-.
T Consensus 27 ~~~~~~lvav~d~-~~~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 27 AASDWTLQGAWSP-TRAKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp SCSSEEEEEEECS-SCTTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred hCCCeEEEEEECC-CHHHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 4567888744432 233344555555643 244555554578988887765555556778999999999854
No 200
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=34.85 E-value=1.6e+02 Score=29.71 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=49.2
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHH---hcCCe-eEEeC-CCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEE
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAK---KLKLV-VRVYP-GRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVV 373 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~---~l~l~-~~~~~-~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI 373 (562)
..++++++-+-+ .+.+..++.++ +.+.. ..++. +.++.+++++ ..|+++..+....-.-.+.+||..|++|+
T Consensus 41 ~~~~~~lvav~d-~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 41 RRDDVEIVAFAD-PDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp TCTTEEEEEEEC-SCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHHHTTCEEE
T ss_pred hCCCcEEEEEEe-CCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEE
Confidence 457888877665 34555555444 34532 34432 3457888887 47888777655454556788999999999
Q ss_pred eeC
Q 008544 374 CAN 376 (562)
Q Consensus 374 ~t~ 376 (562)
+-.
T Consensus 120 ~EK 122 (444)
T 2ixa_A 120 MEV 122 (444)
T ss_dssp ECC
T ss_pred EeC
Confidence 864
No 201
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=34.48 E-value=78 Score=30.72 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=50.3
Q ss_pred cCCcEEEEEeCCC---CHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 302 LAGLEMDLYGNGE---DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 302 ~~~~~l~ivG~g~---~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
.++++++-+-+.. ..+.+.+.+++.++...+ +.+.++++.. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKK---YNNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEE---CSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcc---cCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 5688888777643 235666666666653333 4678888885 7888777654444456889999999999765
Q ss_pred C
Q 008544 377 H 377 (562)
Q Consensus 377 ~ 377 (562)
.
T Consensus 99 P 99 (337)
T 3ip3_A 99 P 99 (337)
T ss_dssp S
T ss_pred C
Confidence 4
No 202
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=34.09 E-value=43 Score=30.44 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.3
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+||++-.+.. .| +.....+.+.|.+.| ++|.++.+
T Consensus 5 k~IllgvTGa----ia-a~k~~~ll~~L~~~g-~eV~vv~T 39 (209)
T 3zqu_A 5 ERITLAMTGA----SG-AQYGLRLLDCLVQEE-REVHFLIS 39 (209)
T ss_dssp SEEEEEECSS----SC-HHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred CEEEEEEECH----HH-HHHHHHHHHHHHHCC-CEEEEEEC
Confidence 7888776643 23 566778889999997 99999976
No 203
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=34.00 E-value=1.6e+02 Score=23.39 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc--CCcEEeeCC
Q 008544 317 DQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM--GKIVVCANH 377 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~--G~PVI~t~~ 377 (562)
..+++.+++.|+++.+. ....+..+.+..+|++++.... .+-..=++..+- |+||.+-+.
T Consensus 24 ~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 24 NAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeCH
Confidence 67788888889887774 3455566777899988875322 234455555554 899988764
No 204
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=33.86 E-value=45 Score=32.37 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=45.2
Q ss_pred cCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 302 LAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 302 ~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.++++++-+-+. +.+..++.+++.+.. ..+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-..
T Consensus 27 ~~~~~~~av~d~-~~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 99 (329)
T 3evn_A 27 AGNGEVVAVSSR-TLESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKP 99 (329)
T ss_dssp HCSEEEEEEECS-CSSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcEEEEEEcC-CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccC
Confidence 467887766542 333334444544432 12467888988 789888776555555567899999999998754
No 205
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=33.79 E-value=1.8e+02 Score=23.04 Aligned_cols=106 Identities=9% Similarity=0.016 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh-hcCEEEEcc-CCCCCcHHHHHHHH--c-----CCc-E
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH-DYKVFLNPS-TTDVVCTATAEALA--M-----GKI-V 372 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~-~adv~v~pS-~~E~~~~~~lEAma--~-----G~P-V 372 (562)
..+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+.++-- ..+.-|..+++.+. . ..| |
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 466777766433 35566666666665443322222222222 127776543 22334556666664 1 233 5
Q ss_pred E-eeCCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 373 V-CANHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 373 I-~t~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
| .|.... .+.+..|..+++.. +.+++.+++..++...
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 4 454443 34556778888874 9999999999988654
No 206
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=33.44 E-value=2.1e+02 Score=26.16 Aligned_cols=111 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHHc--CCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhh
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKD--GERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLE 122 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~--Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~ 122 (562)
+..+++||+|+.. |+..+...+.+.|.+. + ++|..+.+ ..+...-.-.-..
T Consensus 18 ~~~~~~rI~~l~S-------G~g~~~~~~l~~l~~~~~~-~~I~~Vvt-----------------~~~~~~~~~~A~~-- 70 (229)
T 3auf_A 18 FQGHMIRIGVLIS-------GSGTNLQAILDGCREGRIP-GRVAVVIS-----------------DRADAYGLERARR-- 70 (229)
T ss_dssp CBTTCEEEEEEES-------SCCHHHHHHHHHHHTTSSS-EEEEEEEE-----------------SSTTCHHHHHHHH--
T ss_pred ccCCCcEEEEEEe-------CCcHHHHHHHHHHHhCCCC-CeEEEEEc-----------------CCCchHHHHHHHH--
Q ss_pred hccCCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEc
Q 008544 123 DRTGFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVH 194 (562)
Q Consensus 123 ~~~~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h 194 (562)
..++.+.............-..+.+.+++.+||+|++...... + ...+...++..+..+|
T Consensus 71 --------~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~I--L--~~~~l~~~~~~~iNiH 130 (229)
T 3auf_A 71 --------AGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRL--V--RGPMLTAFPNRILNIH 130 (229)
T ss_dssp --------TTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSC--C--CHHHHHHSTTCEEEEE
T ss_pred --------cCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhHh--C--CHHHHhhccCCEEEEc
No 207
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=32.70 E-value=78 Score=28.85 Aligned_cols=43 Identities=9% Similarity=0.305 Sum_probs=27.9
Q ss_pred HhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 151 GDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 151 ~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
..+.+.+++.+||++++...... + ...+...++..+..+|...
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~~I--L--~~~~l~~~~~~~iNiHpSL 114 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFMSI--L--PEKFVTDWHHKIINIHPSL 114 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCCSC--C--CHHHHHHTTTSEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEeCCceE--e--CHHHHhhccCCeEEECccc
Confidence 34677888899999998876433 2 2334455554566777654
No 208
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=32.50 E-value=1.7e+02 Score=22.50 Aligned_cols=103 Identities=6% Similarity=-0.094 Sum_probs=58.0
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHH--cCCcEEee-CC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPST-TDVVCTATAEALA--MGKIVVCA-NH 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma--~G~PVI~t-~~ 377 (562)
.++.++.+.+. .+.++...+..+..+.......+..+.+. ..|+++.-.. .+.-|..+++.+. ...|+|.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 35666665332 34555555655554433322222223333 3577765432 2334566666653 46776654 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.. .+.+..|..+++.. +.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 84 DNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 33 34456678888874 89999999988764
No 209
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=32.44 E-value=1.8e+02 Score=22.83 Aligned_cols=106 Identities=6% Similarity=-0.095 Sum_probs=60.3
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. ...+.......+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+. ...|||.. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTA 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 45666665332 34555555666655443332222223333 357766543 33345667777664 35676654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
... .+.+..|..+++.. +.+++...+..++....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 84 KDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp TTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 332 33456778888874 89999999998886543
No 210
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=31.67 E-value=99 Score=26.29 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhh-----cC-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc---
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHD-----YK-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND--- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~-----ad-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e--- 381 (562)
+.+++.+++++..+.++....+-+ +.+++ +| +.++|--+-..+.++.+|++ .++|+|---.. .+|
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FR 110 (149)
T 2uyg_A 31 ALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSYALLDAIRAQPLPVVEVHLTNLHAREEFR 110 (149)
T ss_dssp HHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGG
T ss_pred HHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccHHHHHHHHhCCCCEEEEEecCcccccccc
Confidence 556666777777777765533333 44443 34 78899877778999999975 57899865332 233
Q ss_pred ---ccccCCceEeeC-CHHHHHHHHHHHHh
Q 008544 382 ---FFKQFPNCRTYD-GRNGFVEATLKALA 407 (562)
Q Consensus 382 ---~v~~~~~g~~~~-d~~~la~~i~~ll~ 407 (562)
++.+-..|.++. -.+...-+++.+++
T Consensus 111 h~S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 140 (149)
T 2uyg_A 111 RHSVTAPACRGIVSGFGPLSYKLALVYLAE 140 (149)
T ss_dssp GCCSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccccceeEEEEecCHHHHHHHHHHHHH
Confidence 445566788875 66666666666553
No 211
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=31.66 E-value=39 Score=29.75 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCcEEEE-EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEccCCCCCcHHHHHHHHc
Q 008544 290 ELLGLLNIYHKELAGLEMDL-YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPSTTDVVCTATAEALAM 368 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~i-vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~ 368 (562)
.-++.+..+++.+|+.+|.+ +|. + .+... ....+.+++++.+.+.+.|-..+--++.+-+.++.
T Consensus 84 yT~dTl~~l~~~~p~~~~~~iiG~-D---~l~~l-----------~~W~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~~ 148 (177)
T 3h05_A 84 TTYALLEKIQEIYPTADITFVIGP-D---NFFKF-----------AKFYKAEEITERWTVMACPEKVKIRSTDIRNALIE 148 (177)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEECH-H---HHHTG-----------GGSTTHHHHHHHSEEEECCCSSCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCeEEEEec-c---hhhhc-----------ccchhHHHHHHhCCEEEEcCCCCCcHHHHHHHHHc
Confidence 44566777778889988755 453 2 12111 22456788999999999987677778888899998
Q ss_pred CCc
Q 008544 369 GKI 371 (562)
Q Consensus 369 G~P 371 (562)
|.+
T Consensus 149 g~~ 151 (177)
T 3h05_A 149 GKD 151 (177)
T ss_dssp TCC
T ss_pred CCC
Confidence 865
No 212
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=31.62 E-value=72 Score=31.39 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=48.0
Q ss_pred HhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhc--CEEEEccCCCCCcHHHHHHHHcCCcEEeeCC
Q 008544 300 KELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDY--KVFLNPSTTDVVCTATAEALAMGKIVVCANH 377 (562)
Q Consensus 300 ~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~a--dv~v~pS~~E~~~~~~lEAma~G~PVI~t~~ 377 (562)
.+.|+++++-+-+ .+.+..++.+++++. .. .+.+.++++... |+++..+....-.-.+.+|+..|++|++-..
T Consensus 26 ~~~~~~~l~av~d-~~~~~~~~~a~~~~~-~~---~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 100 (359)
T 3m2t_A 26 LQMQDIRIVAACD-SDLERARRVHRFISD-IP---VLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKP 100 (359)
T ss_dssp HTCTTEEEEEEEC-SSHHHHGGGGGTSCS-CC---EESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSC
T ss_pred HhCCCcEEEEEEc-CCHHHHHHHHHhcCC-Cc---ccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECC
Confidence 3457888886654 355555665555432 11 146788999865 8777766544445557899999999998643
No 213
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.35 E-value=1.7e+02 Score=25.45 Aligned_cols=103 Identities=9% Similarity=-0.011 Sum_probs=59.2
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEc-cCCCCCcHHHHHHHH---cCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNP-STTDVVCTATAEALA---MGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~p-S~~E~~~~~~lEAma---~G~PVI~t-~ 376 (562)
.+++++.+.+. .+.+.......|..+.......+..+.+. ..|+++.- ...+.-|..+++.+. .++|||.- .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 45667765433 35566666666655443322222222222 24666654 233445777777765 36777654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++.++|..++.
T Consensus 85 ~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 85 HGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp CTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 332 34455677788864 89999999998875
No 214
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=31.03 E-value=4.1e+02 Score=26.41 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=73.6
Q ss_pred EEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeC-----------CCC---HHHHHHHHHhcCCeeEE-eCCCCChH
Q 008544 276 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGN-----------GED---FDQIQRAAKKLKLVVRV-YPGRDHAD 340 (562)
Q Consensus 276 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~-----------g~~---~~~l~~~~~~l~l~~~~-~~~~~~~~ 340 (562)
++.+|-..-. ..+..++.+..+++. ++.++..+. |.. ...+.+.+++.|+.+.- .....+++
T Consensus 144 ~~Iigpcsve-s~e~a~~~a~~~k~a--Ga~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~~~~ 220 (385)
T 3nvt_A 144 VFVFGPCSVE-SYEQVAAVAESIKAK--GLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIE 220 (385)
T ss_dssp EEEEECSBCC-CHHHHHHHHHHHHHT--TCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGGGHH
T ss_pred EEEEEeCCcC-CHHHHHHHHHHHHHc--CCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHHHHH
Confidence 4556654444 888888888888765 355555553 111 25666777788876543 22233444
Q ss_pred HHHhhcCEEEEccCCCCCcHHHHHH-HHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 341 PIFHDYKVFLNPSTTDVVCTATAEA-LAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 341 ~l~~~adv~v~pS~~E~~~~~~lEA-ma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
.+...+|++=.||.. .....++++ -..|+||+.+.... .+.+++..+++.+.+..
T Consensus 221 ~l~~~vd~lkIgs~~-~~n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~G 276 (385)
T 3nvt_A 221 VALDYVDVIQIGARN-MQNFELLKAAGRVDKPILLKRGLS-------------ATIEEFIGAAEYIMSQG 276 (385)
T ss_dssp HHTTTCSEEEECGGG-TTCHHHHHHHHTSSSCEEEECCTT-------------CCHHHHHHHHHHHHTTT
T ss_pred HHHhhCCEEEECccc-ccCHHHHHHHHccCCcEEEecCCC-------------CCHHHHHHHHHHHHHcC
Confidence 444457898888852 223455554 56899999997642 37888888888887643
No 215
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=30.96 E-value=1.2e+02 Score=29.11 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHH-hhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.++++++ +-+ .+.+..++.+++.+.... ..+..+.+ ...|+.+..+......-.+.+|+..|++|++-.
T Consensus 24 ~~~~~~l~-v~d-~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 94 (323)
T 1xea_A 24 QWPDIELV-LCT-RNPKVLGTLATRYRVSAT----CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDK 94 (323)
T ss_dssp TSTTEEEE-EEC-SCHHHHHHHHHHTTCCCC----CSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEES
T ss_pred hCCCceEE-EEe-CCHHHHHHHHHHcCCCcc----ccCHHHHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeC
Confidence 34678888 544 456677777777775311 12222334 578988887665555556678999999999754
No 216
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=30.79 E-value=43 Score=31.94 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=34.3
Q ss_pred hhhccCCeEEEEecc-------cCCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA-------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~-------~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|.+. .++...|+..-...+.+.|.+.| ++|++..
T Consensus 15 ~m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~ 66 (278)
T 3od5_A 15 KMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEVKCFN 66 (278)
T ss_dssp CCCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 477777888777533 24566787888888999999998 9999873
No 217
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=30.76 E-value=65 Score=27.55 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCeeEEeCCCCChH--HHHhhc----C-EEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC---Ccc----
Q 008544 317 DQIQRAAKKLKLVVRVYPGRDHAD--PIFHDY----K-VFLNPSTTDVVCTATAEALA-MGKIVVCANHP---SND---- 381 (562)
Q Consensus 317 ~~l~~~~~~l~l~~~~~~~~~~~~--~l~~~a----d-v~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~---~~e---- 381 (562)
+.+++.++++|..+.++....+-+ +.++++ | +.++|--+-..+.++.+|++ .++|+|---.. .+|
T Consensus 33 ~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh 112 (154)
T 1uqr_A 33 QHLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRH 112 (154)
T ss_dssp HHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGS
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccccccc
Confidence 445556666676666654433333 444433 4 78899766667899999964 68999876332 233
Q ss_pred --ccccCCceEeeC-CHHHHHHHHHHH
Q 008544 382 --FFKQFPNCRTYD-GRNGFVEATLKA 405 (562)
Q Consensus 382 --~v~~~~~g~~~~-d~~~la~~i~~l 405 (562)
++.+-..|.++. -.+...-+++.+
T Consensus 113 ~S~~s~~a~GvI~G~G~~gY~lAl~a~ 139 (154)
T 1uqr_A 113 HSYLSDVAKGVICGLGAKGYDYALDFA 139 (154)
T ss_dssp CCSSGGGSSEEEESSTTHHHHHHHHHH
T ss_pred ccccCcceeEEEEecCHHHHHHHHHHH
Confidence 455567788875 445554444443
No 218
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=30.18 E-value=1.6e+02 Score=22.84 Aligned_cols=104 Identities=6% Similarity=-0.035 Sum_probs=59.5
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCC-eeEEeCCCCChHHHHh--hcCEEEEccC-CCCCcHHHHHHHHc-----CCcEEe
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH--DYKVFLNPST-TDVVCTATAEALAM-----GKIVVC 374 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l-~~~~~~~~~~~~~l~~--~adv~v~pS~-~E~~~~~~lEAma~-----G~PVI~ 374 (562)
.+++++.+.+. ...++...+..+. .+.......+..+.+. ..|+++.-.. .+.-|..+++.+.. ..|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 45677776433 3556666665554 2222222222223333 3577766432 34457778887753 567665
Q ss_pred e-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 375 A-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 375 t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
. ..+. .+.+..|..+++.. +.+++.++|..++..
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 4 3333 34456677788864 899999999887753
No 219
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=29.85 E-value=3.1e+02 Score=24.92 Aligned_cols=62 Identities=3% Similarity=-0.060 Sum_probs=36.7
Q ss_pred cCEEEEcc-CCCCCcHHHHHHH---HcCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 346 YKVFLNPS-TTDVVCTATAEAL---AMGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 346 adv~v~pS-~~E~~~~~~lEAm---a~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.|+.++-- ..+.-|..+++.+ ...+|||.- .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 174 ~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 45555431 1222344555544 246787764 3332 44456677788864 89999999988764
No 220
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=29.52 E-value=48 Score=31.44 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=34.8
Q ss_pred hhhccCCeEEEEecc--c------------CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S------------LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~------------~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++.+|+|-+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 11 ~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~ 69 (271)
T 3h11_B 11 QMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEIKPHD 69 (271)
T ss_dssp CCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCC-CEEEEEe
Confidence 387777888887754 2 4556787788888999999998 9998873
No 221
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=29.19 E-value=2.3e+02 Score=22.92 Aligned_cols=102 Identities=7% Similarity=0.001 Sum_probs=57.2
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhh---cCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHD---YKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~---adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
.+++|+.+.+. .+.+....+. +..+.......+..+.+.. .|+++.-. ..+.-|..+++.+. ...|||..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 46667765332 2444444432 4444433333333344432 47766543 34455667766654 35676654
Q ss_pred CCCC----ccccccC-CceEeeC--CHHHHHHHHHHHHh
Q 008544 376 NHPS----NDFFKQF-PNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 376 ~~~~----~e~v~~~-~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.... .+.+..+ ..+++.. +.+++.++|..++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~ 122 (151)
T 3kcn_A 84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIK 122 (151)
T ss_dssp CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 3332 3445566 6778864 99999999998875
No 222
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=29.08 E-value=39 Score=31.83 Aligned_cols=45 Identities=22% Similarity=0.095 Sum_probs=30.0
Q ss_pred hhhccCCeEEEEecc--c----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|.+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 14 ~m~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LG-F~V~~~~ 64 (259)
T 3sir_A 14 NMRHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLD-FEVTVYK 64 (259)
T ss_dssp CCCSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEEe
Confidence 477777888777633 2 3455688888889999999998 9998884
No 223
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=28.93 E-value=1.8e+02 Score=28.20 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEE-e------------CCCCChHHHHhhcCEEEEccCCC
Q 008544 290 ELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRV-Y------------PGRDHADPIFHDYKVFLNPSTTD 356 (562)
Q Consensus 290 ~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~-~------------~~~~~~~~l~~~adv~v~pS~~E 356 (562)
.+++++ .+.|+++++.+.+.. .+.....++..|....- + .-..+.++++...|+.+..+-..
T Consensus 16 ~~~r~l----~~~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~ 90 (334)
T 2czc_A 16 RVAYAV----TKQDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGG 90 (334)
T ss_dssp HHHHHH----HTCTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTT
T ss_pred HHHHHH----hcCCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCcc
Confidence 345554 346788888777632 34444555555543221 1 11245667788899888776443
Q ss_pred CCcHHHHHHHHcCCcEEeeC
Q 008544 357 VVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 357 ~~~~~~lEAma~G~PVI~t~ 376 (562)
.---....++..|++||++.
T Consensus 91 ~h~~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 91 IGAKNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHHHHHTCEEEECT
T ss_pred ccHHHHHHHHHcCCceEeec
Confidence 31223347888999999763
No 224
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=28.86 E-value=2.1e+02 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHhhcCcCCCcEEEecCCchh
Q 008544 153 ITEIIPDEEADIAVLEEPEHL 173 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~ 173 (562)
+.+++.+.++|+|++..|...
T Consensus 81 ~~~ll~~~~~D~V~i~tp~~~ 101 (350)
T 3rc1_A 81 YPALLERDDVDAVYVPLPAVL 101 (350)
T ss_dssp HHHHHTCTTCSEEEECCCGGG
T ss_pred HHHHhcCCCCCEEEECCCcHH
Confidence 677887888999999988766
No 225
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=28.59 E-value=3.3e+02 Score=25.06 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=35.4
Q ss_pred hcCEEEE-ccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 345 DYKVFLN-PSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 345 ~adv~v~-pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
..|.+|+ |...+...-.+-++...|+|||+-+....+. .....+..++.+....+.+.+++.
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAEL 123 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHH
Confidence 5675554 4444444445667778999999988753210 012233345666666666666554
No 226
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=28.42 E-value=2.4e+02 Score=23.04 Aligned_cols=104 Identities=8% Similarity=-0.004 Sum_probs=65.2
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCe-eEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH-----cCCcEE
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA-----MGKIVV 373 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~-~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma-----~G~PVI 373 (562)
+.++.++=+.+. ++.++...+..|.. +..-..-.+..+.++ ..|+.+.-- --+.-|+.+++.+- ..+|||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI 91 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVL 91 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEE
Confidence 577888866433 46667777777764 322222122223333 457777643 23446788888874 467877
Q ss_pred ee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 374 CA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 374 ~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.- ..+. .+.+..|.++++.. +++++.++|.++++
T Consensus 92 ~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 92 MITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 54 3333 34556788899985 99999999998864
No 227
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=28.10 E-value=52 Score=31.26 Aligned_cols=45 Identities=9% Similarity=-0.065 Sum_probs=34.7
Q ss_pred hhhccCCeEEEEecc--c-----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~-----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|.+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 15 ~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~ 66 (277)
T 1nw9_B 15 ILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLH-FMVEVKG 66 (277)
T ss_dssp CCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred eCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCC-CEEEEEc
Confidence 388777888887633 2 2556787888888999999998 9998873
No 228
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=28.01 E-value=45 Score=31.65 Aligned_cols=45 Identities=29% Similarity=0.222 Sum_probs=34.3
Q ss_pred hhhccCCeEEEEecc--c----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|.+. | .+...|+..-...+++.|.+.| ++|++..
T Consensus 26 ~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LG-F~V~~~~ 76 (272)
T 1m72_A 26 NMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKVTVFP 76 (272)
T ss_dssp CCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 477666788777633 2 3557788888888999999998 9998883
No 229
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.98 E-value=2e+02 Score=21.92 Aligned_cols=102 Identities=8% Similarity=-0.058 Sum_probs=56.6
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeE-EeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
.+++++.+.+. ...++...+..|..+. ......+..+.+. ..|+++.-- ..+.-|..+++.+. ...|+|..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCS 82 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEe
Confidence 35666665332 3555566666665532 2222222223333 357666542 23334666777663 35676654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHH
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKAL 406 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll 406 (562)
.... .+.+..|..+++.. +.+++.+++..++
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 83 AMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3333 34456677888874 8999999988764
No 230
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=27.96 E-value=62 Score=29.27 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=27.7
Q ss_pred hhccCCeEEEEecccCCCcccccccHHHHHHHHHH-cCCCeEEEEee
Q 008544 45 MDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAK-DGERRVTLVIP 90 (562)
Q Consensus 45 m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~-~Gg~eVtvit~ 90 (562)
|+.+++||++..+.. .| +.....+.+.|.+ .| ++|.++.+
T Consensus 15 ~~l~~k~IllgvTGs----ia-a~k~~~lv~~L~~~~g-~~V~vv~T 55 (206)
T 1qzu_A 15 LMERKFHVLVGVTGS----VA-ALKLPLLVSKLLDIPG-LEVAVVTT 55 (206)
T ss_dssp -CCSSEEEEEEECSS----GG-GGTHHHHHHHHC---C-EEEEEEEC
T ss_pred cccCCCEEEEEEeCh----HH-HHHHHHHHHHHhcccC-CEEEEEEC
Confidence 444557888887754 22 5667788899998 77 99999977
No 231
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=27.65 E-value=67 Score=32.01 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=54.9
Q ss_pred ccEEEEEeeccccCCHHHHHHHHHHHHHhcC-CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE
Q 008544 273 TKGAYYIGRMVWSKGYEELLGLLNIYHKELA-GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN 351 (562)
Q Consensus 273 ~~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~-~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~ 351 (562)
+..|..+|.= . |- .-++++ .+.+ +++|+-+-+ .+.+..++.++++|+. . +.+.++++...|+.+.
T Consensus 7 ~~rv~VvG~G-~--g~-~h~~a~----~~~~~~~elvav~~-~~~~~a~~~a~~~gv~--~---~~~~~~l~~~~D~v~i 72 (372)
T 4gmf_A 7 KQRVLIVGAK-F--GE-MYLNAF----MQPPEGLELVGLLA-QGSARSRELAHAFGIP--L---YTSPEQITGMPDIACI 72 (372)
T ss_dssp CEEEEEECST-T--TH-HHHHTT----SSCCTTEEEEEEEC-CSSHHHHHHHHHTTCC--E---ESSGGGCCSCCSEEEE
T ss_pred CCEEEEEehH-H--HH-HHHHHH----HhCCCCeEEEEEEC-CCHHHHHHHHHHhCCC--E---ECCHHHHhcCCCEEEE
Confidence 4556777752 2 32 234444 3344 478875554 3456677888888864 2 3456667777886655
Q ss_pred ccCC---CCC-cHHHHHHHHcCCcEEeeCC
Q 008544 352 PSTT---DVV-CTATAEALAMGKIVVCANH 377 (562)
Q Consensus 352 pS~~---E~~-~~~~lEAma~G~PVI~t~~ 377 (562)
.+.. .+. .-...+|+..|++|++=.-
T Consensus 73 ~~p~~~h~~~~~~~a~~al~aGkhVl~EKP 102 (372)
T 4gmf_A 73 VVRSTVAGGAGTQLARHFLARGVHVIQEHP 102 (372)
T ss_dssp CCC--CTTSHHHHHHHHHHHTTCEEEEESC
T ss_pred ECCCcccchhHHHHHHHHHHcCCcEEEecC
Confidence 4322 222 2236788999999998754
No 232
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=27.54 E-value=47 Score=31.06 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=34.1
Q ss_pred hhhccCCeEEEEecc--c-----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~-----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|... | ++...|+..-...+++.|.+.| ++|++..
T Consensus 10 ~m~~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~Lg-F~V~~~~ 61 (250)
T 2j32_A 10 KMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKN 61 (250)
T ss_dssp CCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCCCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCC-CEEEEEe
Confidence 477766788777643 3 3556787888888999999998 9998873
No 233
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=27.34 E-value=2e+02 Score=27.35 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=34.8
Q ss_pred CChHHHHhhcCEEEEc--cCCCC---CcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLNP--STTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~p--S~~E~---~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
.+.+++++.+|+.++. ...+. +.-..++.|--|.-+|-+..++ .+ |.+++++++.+
T Consensus 165 ~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~--~v----------d~~aL~~aL~~ 225 (290)
T 3gvx_A 165 ESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARAD--VV----------SKPDMIGFLKE 225 (290)
T ss_dssp SSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhc--cc----------CCcchhhhhhh
Confidence 4677899999977753 22233 4555667776666666554432 22 66777777754
No 234
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=27.33 E-value=2e+02 Score=26.46 Aligned_cols=99 Identities=12% Similarity=-0.006 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE-ccCCCCCcHHHHHHHH
Q 008544 289 EELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN-PSTTDVVCTATAEALA 367 (562)
Q Consensus 289 ~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~-pS~~E~~~~~~lEAma 367 (562)
..+++.+.+..++. ++.+.+.....+.+...+.++. -.-..+|.+|+ |...+...-.+-++..
T Consensus 21 ~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~~~~---------------l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 84 (291)
T 3l49_A 21 LKAYQAQIAEIERL-GGTAIALDAGRNDQTQVSQIQT---------------LIAQKPDAIIEQLGNLDVLNPWLQKIND 84 (291)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECTTCHHHHHHHHHH---------------HHHHCCSEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCEEEEEcCCCCHHHHHHHHHH---------------HHHcCCCEEEEeCCChhhhHHHHHHHHH
Confidence 34555555554443 5777776554443322222211 11235676554 4332333334556677
Q ss_pred cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHh
Q 008544 368 MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALA 407 (562)
Q Consensus 368 ~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~ 407 (562)
.|+|||+.+....+ ....+..++.+.-..+.+.+++
T Consensus 85 ~~iPvV~~~~~~~~----~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 85 AGIPLFTVDTATPH----AINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp TTCCEEEESCCCTT----CSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcEEEecCCCCC----cCceEecChHHHHHHHHHHHHH
Confidence 89999999875421 1223334666666666666666
No 235
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=27.30 E-value=57 Score=26.42 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=28.6
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+|++++.+.. |+.+-.+...+.++..+...+ |+|.|+-.
T Consensus 2 kk~~~vv~~~-P~g~~~~~~al~~a~a~~a~~-~~v~vff~ 40 (119)
T 2d1p_B 2 KRIAFVFSTA-PHGTAAGREGLDALLATSALT-DDLAVFFI 40 (119)
T ss_dssp CCEEEEECSC-TTTSTHHHHHHHHHHHHHTTC-SCEEEEEC
T ss_pred cEEEEEEcCC-CCCcHHHHHHHHHHHHHHhCC-CCEEEEEe
Confidence 4688888765 764444466778888888887 99999855
No 236
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=27.12 E-value=61 Score=28.62 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=33.7
Q ss_pred hhhccCCeEEEEecc-------cCCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA-------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~-------~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++.+|+|-+. .++...|+..-...|.+.|.+.| ++|++..
T Consensus 38 ~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LG-F~V~~~~ 89 (179)
T 3p45_A 38 KMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG-FEVKCFN 89 (179)
T ss_dssp CCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEe
Confidence 466666777766532 34567888888888989999998 9999883
No 237
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=27.09 E-value=2.1e+02 Score=21.78 Aligned_cols=102 Identities=8% Similarity=-0.114 Sum_probs=55.3
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH--cCCcEEee-CCC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCA-NHP 378 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVI~t-~~~ 378 (562)
+++++.+.+. .+.+++.....+..+.......+....+. ..|+++.-. ..+.-|..+++.+. ...|+|.- ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 4555655332 34555555555554332222111112222 357666532 22334667777765 34666544 333
Q ss_pred C----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 379 S----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 379 ~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
. .+.+..|..+++.. +.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 83 EESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 3 34456677888864 89999999988764
No 238
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=26.96 E-value=96 Score=26.67 Aligned_cols=103 Identities=10% Similarity=0.020 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA- 375 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t- 375 (562)
..+++|+.+.+. .+.++......|..+.......+..+.+. ..|++++-- ..+.-|+.+++.+. ...|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 456777776433 45566666666655433333223333333 247766543 23445677777654 36777654
Q ss_pred CCCC----ccccccCCceEeeC--CHHHHHHHHHHHH
Q 008544 376 NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKAL 406 (562)
Q Consensus 376 ~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll 406 (562)
.... .+.+..|..+++.. +.+++..+|..++
T Consensus 87 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~ 123 (184)
T 3rqi_A 87 GYASIATAVQAVKDGADNYLAKPANVESILAALQTNA 123 (184)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTH
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 3333 44567788888874 8999998887765
No 239
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Probab=26.96 E-value=3.7e+02 Score=26.56 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=50.5
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCC--------------hHHHHh--hcCEEEEccCCCCCcHHHHHHH
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDH--------------ADPIFH--DYKVFLNPSTTDVVCTATAEAL 366 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~--------------~~~l~~--~adv~v~pS~~E~~~~~~lEAm 366 (562)
++++++-+..|.+.+.+.+.+++++.+........+ ..++.. .+|+++.......-=...++|+
T Consensus 27 ~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~~~~~~D~Vv~AivG~aGL~ptlaAi 106 (376)
T 3a06_A 27 KGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEMLEALKPDITMVAVSGFSGLRAVLASL 106 (376)
T ss_dssp CSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHHHHHCCSEEEECCCSTTHHHHHHHHH
T ss_pred CCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHhcCCCCCEEEEEeeCHHHHHHHHHHH
Confidence 567777664567888888888888876544333222 235553 5898888754433344578899
Q ss_pred HcCCcEEeeCC
Q 008544 367 AMGKIVVCANH 377 (562)
Q Consensus 367 a~G~PVI~t~~ 377 (562)
-+|+-|...+-
T Consensus 107 ~aGK~vaLANK 117 (376)
T 3a06_A 107 EHSKRVCLANK 117 (376)
T ss_dssp HHCSEEEECCS
T ss_pred HCCCEEEEeCh
Confidence 99999999765
No 240
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.81 E-value=1.8e+02 Score=28.14 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=26.8
Q ss_pred hHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEcCCc
Q 008544 152 DITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVHTNY 197 (562)
Q Consensus 152 ~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h~~~ 197 (562)
.+.+.+++.+||++++...... + ...+....+.-+..+|...
T Consensus 76 ~~~~~l~~~~~Dliv~~~y~~i--l--p~~~l~~~~~g~iNiHpSl 117 (318)
T 3q0i_A 76 ESKQQLAALNADLMVVVAYGLL--L--PKVVLDTPKLGCINVHGSI 117 (318)
T ss_dssp HHHHHHHTTCCSEEEESSCCSC--C--CHHHHTSSTTCEEEEESSS
T ss_pred HHHHHHHhcCCCEEEEeCcccc--C--CHHHHhhCcCCEEEeCCcc
Confidence 3667788899999998765433 2 2224444444567888664
No 241
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=26.76 E-value=2.8e+02 Score=27.55 Aligned_cols=62 Identities=6% Similarity=0.076 Sum_probs=41.5
Q ss_pred CHHHHHHHHHhcCCeeEEeCCCCChH-HHHhh--cCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC
Q 008544 315 DFDQIQRAAKKLKLVVRVYPGRDHAD-PIFHD--YKVFLNPSTTDVVCTATAEALA-MGKIVVCANHP 378 (562)
Q Consensus 315 ~~~~l~~~~~~l~l~~~~~~~~~~~~-~l~~~--adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~ 378 (562)
....+.+.+++.|+.+ +-..++... +++.. .|++=.+| .|-.-..+++++| .|+|||.+...
T Consensus 102 ~~~~L~~~~~~~Gi~~-~stpfD~~svd~l~~~~vd~~KIgS-~~~~N~pLL~~va~~gKPViLStGm 167 (385)
T 1vli_A 102 WILPLLDYCREKQVIF-LSTVCDEGSADLLQSTSPSAFKIAS-YEINHLPLLKYVARLNRPMIFSTAG 167 (385)
T ss_dssp GHHHHHHHHHHTTCEE-ECBCCSHHHHHHHHTTCCSCEEECG-GGTTCHHHHHHHHTTCSCEEEECTT
T ss_pred HHHHHHHHHHHcCCcE-EEccCCHHHHHHHHhcCCCEEEECc-ccccCHHHHHHHHhcCCeEEEECCC
Confidence 3577888888888632 223333333 66654 47777787 4556677888776 69999999764
No 242
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=26.75 E-value=2.4e+02 Score=27.60 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=34.9
Q ss_pred CChHHHHhhcCEEEEc--cCC---CCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLNP--STT---DVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~p--S~~---E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
++.+++++.+|+.++. ... .-+.-..++.|--|.-+|-+..|+ ++ |.+++.+++..
T Consensus 219 ~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~--~v----------de~aL~~aL~~ 279 (345)
T 4g2n_A 219 DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD--LI----------NDDALIEALRS 279 (345)
T ss_dssp SSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCc--hh----------CHHHHHHHHHh
Confidence 5788999999977753 222 235566777776676666554432 22 55666666653
No 243
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.68 E-value=55 Score=31.73 Aligned_cols=45 Identities=29% Similarity=0.222 Sum_probs=34.3
Q ss_pred hhhccCCeEEEEecc--c----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|... | .+...|+..-...+.+.|.+.| ++|++..
T Consensus 54 ~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LG-F~V~~~~ 104 (310)
T 2nn3_C 54 NMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG-FKVTVFP 104 (310)
T ss_dssp CCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 477666787777632 2 3557888888888999999998 9998883
No 244
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=26.27 E-value=1.8e+02 Score=29.04 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=44.6
Q ss_pred CcEEEEEeCCCCHHHHHHHHHhcCCeeEEeC----------CCCChHHHHhhcCEEEE--ccCCC-------CCcHHHHH
Q 008544 304 GLEMDLYGNGEDFDQIQRAAKKLKLVVRVYP----------GRDHADPIFHDYKVFLN--PSTTD-------VVCTATAE 364 (562)
Q Consensus 304 ~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~----------~~~~~~~l~~~adv~v~--pS~~E-------~~~~~~lE 364 (562)
+-++-|+|-|.--..+-+.++.+|.++.++. ...+.+++++.+|++++ |...+ -+.-..++
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~ 195 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLA 195 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHh
Confidence 3455666655444444444455555444321 24567799999998776 33333 24556778
Q ss_pred HHHcCCcEEeeCCCC
Q 008544 365 ALAMGKIVVCANHPS 379 (562)
Q Consensus 365 Ama~G~PVI~t~~~~ 379 (562)
.|.-|.-+|-+..|+
T Consensus 196 ~mk~gailIN~sRG~ 210 (380)
T 2o4c_A 196 ALRPGTWLVNASRGA 210 (380)
T ss_dssp TSCTTEEEEECSCGG
T ss_pred hCCCCcEEEECCCCc
Confidence 887787777665543
No 245
>1im3_D Cytomegalovirus protein US2; beta sheet, beta sandwhich, immunoglobulin (IG) fold, immunoglobulin (IG)-like domain, protein complex; 2.20A {Human herpesvirus 5} SCOP: b.1.18.5
Probab=26.16 E-value=18 Score=26.75 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=15.9
Q ss_pred cCccccCCCCcccceeeeeecceeeE
Q 008544 508 GKGHCHRPNGSWFGSVLVLVGSVIGV 533 (562)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (562)
...+||.+||+-||- ||+.|-
T Consensus 6 ~~nrc~i~ng~~f~r-----gsi~gn 26 (95)
T 1im3_D 6 EDNRCYIDNGKLFAR-----GSIVGN 26 (95)
T ss_dssp EEEEEEECSSEEEEE-----EEEEEC
T ss_pred cCceEEEeCCeEEee-----ceEecc
Confidence 357899999999874 566553
No 246
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=26.11 E-value=69 Score=27.82 Aligned_cols=45 Identities=11% Similarity=-0.000 Sum_probs=34.3
Q ss_pred hhhccCCeEEEEecc--------------cCCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--------------SLPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--------------~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++.+|+|-+. .++...|+..-...+.+.|...| ++|++..
T Consensus 17 ~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~ 75 (164)
T 1qtn_A 17 QMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH-FEIKPHD 75 (164)
T ss_dssp CCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCC-CEEEEec
Confidence 377666777777654 24567888888888989999998 9998873
No 247
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=26.08 E-value=59 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.7
Q ss_pred hhccCCeEEEEecc--c-----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 45 MDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 45 m~~~~~rI~ivt~~--~-----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
|+.+++.+++|-+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 11 m~~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~ 61 (146)
T 2dko_A 11 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKN 61 (146)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCC-CEEEEee
Confidence 66666777776643 2 3456788888888889999998 9999884
No 248
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=26.03 E-value=4.3e+02 Score=25.07 Aligned_cols=103 Identities=11% Similarity=0.028 Sum_probs=59.7
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcC--CcEEEEEe---------------CC-C-CHHHHHHHHHhcCCeeEE-e
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELA--GLEMDLYG---------------NG-E-DFDQIQRAAKKLKLVVRV-Y 333 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~--~~~l~ivG---------------~g-~-~~~~l~~~~~~l~l~~~~-~ 333 (562)
+.++.+|-- .-.+.+.+++.++++++... .+..++-+ -| + ..+.+++.+++.|+.+-- .
T Consensus 17 ~~~vIaGPC-sie~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev 95 (288)
T 3tml_A 17 PFFLIAGTC-VVESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDV 95 (288)
T ss_dssp CCEEEEECS-BCCCHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ceEEEEeCC-cCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 445555543 33467777777777764310 23333332 22 1 125566777788876443 2
Q ss_pred CCCCChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 334 PGRDHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 334 ~~~~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
....+.+.+...+|++=.+|. ...+++ +-|+-..|+||+.++.-
T Consensus 96 ~d~~~v~~l~~~vd~lkIgA~~~~n~~L-Lr~~a~~gkPVilK~G~ 140 (288)
T 3tml_A 96 HSIDEIEQVASVVDVLQTPAFLCRQTDF-IHACARSGKPVNIKKGQ 140 (288)
T ss_dssp CSGGGHHHHHHHCSEEEECGGGTTCHHH-HHHHHTSSSCEEEECCT
T ss_pred CCHHHHHHHHHhCCEEEECcccccCHHH-HHHHHccCCcEEEeCCC
Confidence 333344444455899999984 345553 55667789999999763
No 249
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.91 E-value=99 Score=27.12 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.2
Q ss_pred CeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 50 QHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 50 ~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
+||++..+.. .| +.....+.+.|.+.| ++|+++.+
T Consensus 6 k~IllgvTGs----~a-a~k~~~ll~~L~~~g-~~V~vv~T 40 (175)
T 3qjg_A 6 ENVLICLCGS----VN-SINISHYIIELKSKF-DEVNVIAS 40 (175)
T ss_dssp CEEEEEECSS----GG-GGGHHHHHHHHTTTC-SEEEEEEC
T ss_pred CEEEEEEeCH----HH-HHHHHHHHHHHHHCC-CEEEEEEC
Confidence 5888777644 23 556778889999997 99999977
No 250
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=25.86 E-value=1.9e+02 Score=25.30 Aligned_cols=107 Identities=7% Similarity=0.027 Sum_probs=58.7
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhcCC-eeEEeCCCCChHHHHh---------------hcCEEEEcc-CCCCCcHHHHHH
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKLKL-VVRVYPGRDHADPIFH---------------DYKVFLNPS-TTDVVCTATAEA 365 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l~l-~~~~~~~~~~~~~l~~---------------~adv~v~pS-~~E~~~~~~lEA 365 (562)
..+++|+-+.+. .+.++...+..+. .+.......+..+.+. ..|++++-- ..+.-|+.+++.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 356666665332 3455555565555 3333333333333333 367766643 334457777776
Q ss_pred HH-------cCCcEEee-CCC-C----ccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 366 LA-------MGKIVVCA-NHP-S----NDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 366 ma-------~G~PVI~t-~~~-~----~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
+. ..+|||.. ... . .+.+..+..+++....++|.++|..++....
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC----
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhhhH
Confidence 64 45777655 332 2 3455677888887644489999988876543
No 251
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=25.67 E-value=1.9e+02 Score=28.46 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcCCeeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 315 DFDQIQRAAKKLKLVVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 315 ~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
+.+..++.+++++... .+.+.++++.. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 55 ~~~~a~~~a~~~~~~~----~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 114 (383)
T 3oqb_A 55 SAEKVEALAKRFNIAR----WTTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEK 114 (383)
T ss_dssp SSHHHHHHHHHTTCCC----EESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECS
T ss_pred CHHHHHHHHHHhCCCc----ccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcC
Confidence 4566677777777631 23678888886 6877777655555667889999999999754
No 252
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=25.63 E-value=2.5e+02 Score=22.15 Aligned_cols=105 Identities=9% Similarity=0.015 Sum_probs=59.3
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCe-eEEeCCCCChHHHHh-------hcCEEEEccC-CCCCcHHHHHHHHc----CC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLV-VRVYPGRDHADPIFH-------DYKVFLNPST-TDVVCTATAEALAM----GK 370 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~-~~~~~~~~~~~~l~~-------~adv~v~pS~-~E~~~~~~lEAma~----G~ 370 (562)
.+++++.+.+. .+.++...+..+.. +.......+..+.+. ..|++++--. .+.-|+.+++.+.. ..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 34566665332 35555555555543 222222222223332 3577776432 23356777777642 46
Q ss_pred cEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 371 IVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 371 PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
|||.- .... .+.+..|..+++.. +.+++.++|.+++...
T Consensus 83 ~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 76654 4433 34556778888874 8999999999887543
No 253
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=25.63 E-value=72 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=33.4
Q ss_pred hhhccCCeEEEEecc--c-----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTTA--S-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~~--~-----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++.+|+|-+. | ++...|+..-...+.+.|.+.| ++|++..
T Consensus 27 ~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg-F~V~~~~ 78 (167)
T 1pyo_A 27 RLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLG-YDVHVLC 78 (167)
T ss_dssp CCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred cCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCC-CEEEEee
Confidence 377777787777632 2 2456788888888989999998 9998873
No 254
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=25.60 E-value=3.1e+02 Score=26.20 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=17.3
Q ss_pred HHhhcCcCCCcEEEecCCchh
Q 008544 153 ITEIIPDEEADIAVLEEPEHL 173 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~ 173 (562)
+.+++.+.++|+|++..|...
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~ 79 (329)
T 3evn_A 59 LEDMLADESIDVIYVATINQD 79 (329)
T ss_dssp HHHHHTCTTCCEEEECSCGGG
T ss_pred HHHHhcCCCCCEEEECCCcHH
Confidence 677787788999999988765
No 255
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=25.48 E-value=2.5e+02 Score=22.22 Aligned_cols=104 Identities=4% Similarity=-0.020 Sum_probs=58.2
Q ss_pred CcEEEEEeCCCC-HHHHHHHHHhc-CCeeE-EeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEE-
Q 008544 304 GLEMDLYGNGED-FDQIQRAAKKL-KLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM---GKIVV- 373 (562)
Q Consensus 304 ~~~l~ivG~g~~-~~~l~~~~~~l-~l~~~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~---G~PVI- 373 (562)
..+++++.+.+. .+.+....... +..+. ......+..+.+. ..|+++.-. ..+.-|..+++.+.. ..|||
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 467777776433 35555555554 43321 2222222223333 357777653 334457777777754 34554
Q ss_pred eeCCCC--ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 374 CANHPS--NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 374 ~t~~~~--~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.+.... .+.+..+..+++.. +.+++.++|..++.
T Consensus 89 ~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 89 ITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344332 45556777888864 88999999988775
No 256
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.31 E-value=3.7e+02 Score=24.10 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEEP 410 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~~ 410 (562)
..|.+|+.+..+...-.+-++...|.|||..+....+. ....+..++.+....+.+.+++...
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G~ 120 (272)
T 3o74_A 58 RCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPA---HFCSVISDDRDASRQLAASLLSSAP 120 (272)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTT---TCEEEEECHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCcc---ccCEEEEchHHHHHHHHHHHHHCCC
Confidence 56755554332112334556677999999988754211 1223334677777777777776543
No 257
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=24.97 E-value=92 Score=24.10 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=56.7
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCC-CCcHHHHHHH---HcCCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTD-VVCTATAEAL---AMGKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E-~~~~~~lEAm---a~G~PVI~t-~ 376 (562)
.+++++.+.+. .+.+.......+..+.......+..+.+. ..|+++.-.... .-|..+++.+ ..+.|+|.- .
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEec
Confidence 34566776554 45666666655655444433333334443 347666543221 1222333433 345776654 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 84 HSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp STTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 322 44556667777764 99999999988775
No 258
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=24.91 E-value=1.2e+02 Score=26.67 Aligned_cols=102 Identities=7% Similarity=0.031 Sum_probs=57.6
Q ss_pred EEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CCCC
Q 008544 306 EMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NHPS 379 (562)
Q Consensus 306 ~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~~~ 379 (562)
+++++.+.+. .+.+.......+ .+.......+..+.+...|+++.-- ..+.-|..+++.+. ..+|||.- ....
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4566665332 344555555444 3322222111112224568777643 33445667777664 46787665 3332
Q ss_pred ----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 380 ----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 380 ----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.+.+..|..+++.. +.+++.++|..++..
T Consensus 83 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 83 DESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 44556778888874 899999999988764
No 259
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=24.80 E-value=2.3e+02 Score=28.78 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=31.2
Q ss_pred CChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.++++..+|+++..+- ...+.-..++.|.-|.-+|....+.
T Consensus 267 ~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 267 VKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp CCHHHHTTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred ccHHHHHhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCC
Confidence 356789999999998643 2335667888888887777666554
No 260
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=24.75 E-value=2.6e+02 Score=22.04 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh---hcCEEEEcc-CCCCCcHHHHHHHHc---CCcEEe
Q 008544 303 AGLEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH---DYKVFLNPS-TTDVVCTATAEALAM---GKIVVC 374 (562)
Q Consensus 303 ~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~---~adv~v~pS-~~E~~~~~~lEAma~---G~PVI~ 374 (562)
+..+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+++.-. ..+.-|..+++.+.. .+|||.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4567777776433 35566666666655443333222223333 357776643 334457778887754 577665
Q ss_pred eC--CCCccccccCCceEeeC--CHHHHHHHHHHHHhCC
Q 008544 375 AN--HPSNDFFKQFPNCRTYD--GRNGFVEATLKALAEE 409 (562)
Q Consensus 375 t~--~~~~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~ 409 (562)
-. ....+....-..+++.. +.+++..+|..++...
T Consensus 94 ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 94 LTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp EESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred EECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHhc
Confidence 43 33322221114566653 8999999999877643
No 261
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=24.73 E-value=1.9e+02 Score=25.48 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=60.2
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHH--cCCcEEeeCC-
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALA--MGKIVVCANH- 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma--~G~PVI~t~~- 377 (562)
.+++++.+.+. .+.+.......+..+.......+..+.+. ..|++++-- ..+.-|..+++.+. ..+|||.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 45667765433 35566666666655443332222223333 357776543 33445666666654 4677766533
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHhC
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAE 408 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~ 408 (562)
.. .+.+..|..+++.. +++++.++|..++..
T Consensus 85 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 22 34445677777764 899999999998865
No 262
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=24.43 E-value=3.4e+02 Score=26.42 Aligned_cols=41 Identities=2% Similarity=0.065 Sum_probs=28.4
Q ss_pred ChHHHHhhcCEEEEc--cCCC---CCcHHHHHHHHcCCcEEeeCCC
Q 008544 338 HADPIFHDYKVFLNP--STTD---VVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 338 ~~~~l~~~adv~v~p--S~~E---~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+.+++++.+|+.++. ...+ -+.-..+..|--|.-+|-+..|
T Consensus 193 ~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 238 (343)
T 2yq5_A 193 DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238 (343)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCC
Confidence 778999999977753 2223 3566677778777777766554
No 263
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=24.43 E-value=3.5e+02 Score=26.51 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCeeEEeCCCCChH-HHHhh--cCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCCC
Q 008544 316 FDQIQRAAKKLKLVVRVYPGRDHAD-PIFHD--YKVFLNPSTTDVVCTATAEALA-MGKIVVCANHPS 379 (562)
Q Consensus 316 ~~~l~~~~~~l~l~~~~~~~~~~~~-~l~~~--adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~~ 379 (562)
...+.+.+++.|+.+.- ..++... +++.. .|++=.+| .|-.-..++++++ .|+|||.+...+
T Consensus 80 ~~~L~~~~~~~Gi~~~s-t~fD~~svd~l~~~~v~~~KI~S-~~~~N~pLL~~va~~gKPviLstGms 145 (350)
T 3g8r_A 80 MQKLVAEMKANGFKAIC-TPFDEESVDLIEAHGIEIIKIAS-CSFTDWPLLERIARSDKPVVASTAGA 145 (350)
T ss_dssp HHHHHHHHHHTTCEEEE-EECSHHHHHHHHHTTCCEEEECS-SSTTCHHHHHHHHTSCSCEEEECTTC
T ss_pred HHHHHHHHHHcCCcEEe-ccCCHHHHHHHHHcCCCEEEECc-ccccCHHHHHHHHhhCCcEEEECCCC
Confidence 46677788888874322 2233222 56654 57887887 4566777888776 899999997643
No 264
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.18 E-value=2.9e+02 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=25.0
Q ss_pred cCEEEEccC-CCCCcHHHHHHHHcCCcEEee-CCCC-cccc
Q 008544 346 YKVFLNPST-TDVVCTATAEALAMGKIVVCA-NHPS-NDFF 383 (562)
Q Consensus 346 adv~v~pS~-~E~~~~~~lEAma~G~PVI~t-~~~~-~e~v 383 (562)
=|+++.... .| ..++.||.-.|.|||+- |..+ ++.+
T Consensus 158 Pdll~v~Dp~~e--~~ai~EA~~l~IPvIaivDTn~dp~~V 196 (231)
T 3bbn_B 158 PDIVIIVDQQEE--YTALRECITLGIPTICLIDTNCNPDLA 196 (231)
T ss_dssp CSEEEESCTTTT--HHHHHHHHTTTCCEEECCCSSSCCSSC
T ss_pred CCEEEEeCCccc--cHHHHHHHHhCCCEEEEecCCCCccce
Confidence 465555443 33 57899999999999997 5554 4443
No 265
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=24.17 E-value=3.1e+02 Score=28.03 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=31.0
Q ss_pred CChHHHHhhcCEEEEccC-CCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLNPST-TDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~pS~-~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.+++++.+|+++..+- ...+.-..++.|--|.-+|-+.++.
T Consensus 294 v~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 294 VTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CCHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred ccHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence 356789999999987653 2235667888888888777765543
No 266
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=24.16 E-value=2e+02 Score=28.70 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=43.4
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCC-----------------------------CCChHHHHhhcCEEE
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPG-----------------------------RDHADPIFHDYKVFL 350 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~-----------------------------~~~~~~l~~~adv~v 350 (562)
...+.+++++|.|.--..+-+++...|.+ +.++.. ..++.+.+..+|++|
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 44567777777776544444444445552 222211 223568888999999
Q ss_pred EccCCCCCcHHHHHHHHcCCcEEe
Q 008544 351 NPSTTDVVCTATAEALAMGKIVVC 374 (562)
Q Consensus 351 ~pS~~E~~~~~~lEAma~G~PVI~ 374 (562)
-.|.--.+.--+++.|+- .|||-
T Consensus 269 G~Sap~l~t~emVk~Ma~-~pIIf 291 (388)
T 1vl6_A 269 GVSRGNILKPEWIKKMSR-KPVIF 291 (388)
T ss_dssp ECSCSSCSCHHHHTTSCS-SCEEE
T ss_pred EeCCCCccCHHHHHhcCC-CCEEE
Confidence 887643455667777763 45443
No 267
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=24.03 E-value=3.4e+02 Score=23.26 Aligned_cols=103 Identities=6% Similarity=-0.099 Sum_probs=59.3
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeE-EeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc--CCcEEee-C
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVR-VYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-N 376 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~-~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVI~t-~ 376 (562)
.+++|+.+.+. ...+.......|..+. ......+..+.+. ..|+++.-- ..+.-|+.+++.+.. ..|||.- .
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEec
Confidence 46677766433 3555566665565543 2332222223333 357666543 233456677776643 3465544 3
Q ss_pred CCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 377 HPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 377 ~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
... .+.+..|..+++.. +.+++..+|..++.
T Consensus 94 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 94 FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 332 45666778888863 89999999998875
No 268
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=23.91 E-value=2.1e+02 Score=29.28 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=49.1
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcC------CcEE
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMG------KIVV 373 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G------~PVI 373 (562)
++++++-+-+ .+.+..++.+++.+.. ..+ +.+.++++. ..|+++..+....-.-.+.+|+.+| ++|+
T Consensus 67 ~~~~lvav~d-~~~~~a~~~a~~~g~~~~~~---~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl 142 (479)
T 2nvw_A 67 SQFQIVALYN-PTLKSSLQTIEQLQLKHATG---FDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLY 142 (479)
T ss_dssp TTEEEEEEEC-SCHHHHHHHHHHTTCTTCEE---ESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEE
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHcCCCccee---eCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEE
Confidence 6788876665 4567777777777753 122 356788886 5788887765444455577899999 9999
Q ss_pred eeC
Q 008544 374 CAN 376 (562)
Q Consensus 374 ~t~ 376 (562)
+-.
T Consensus 143 ~EK 145 (479)
T 2nvw_A 143 VEW 145 (479)
T ss_dssp EES
T ss_pred EeC
Confidence 854
No 269
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=23.74 E-value=2.4e+02 Score=29.30 Aligned_cols=114 Identities=5% Similarity=0.063 Sum_probs=72.9
Q ss_pred ccCCHHHHHHHHHH-HHHh---c--CCcEEEEEeCCC----CHHHHHHHHHhcCCeeEEeCCC-----------------
Q 008544 284 WSKGYEELLGLLNI-YHKE---L--AGLEMDLYGNGE----DFDQIQRAAKKLKLVVRVYPGR----------------- 336 (562)
Q Consensus 284 ~~Kg~~~ll~a~~~-l~~~---~--~~~~l~ivG~g~----~~~~l~~~~~~l~l~~~~~~~~----------------- 336 (562)
...|.+..++++-+ +... . ..-++-|+|.-. +..+++++.+.+|+++.++...
T Consensus 191 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~~~~~gD~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g 270 (519)
T 1qgu_B 191 HVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG 270 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC
Confidence 34688888877654 3221 1 124577777632 2378899999999998865432
Q ss_pred -CChHHHHhhcCEEEEccCCCCCcHHHHHHHHc--CCcEEeeCCC-CccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 337 -DHADPIFHDYKVFLNPSTTDVVCTATAEALAM--GKIVVCANHP-SNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 337 -~~~~~l~~~adv~v~pS~~E~~~~~~lEAma~--G~PVI~t~~~-~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
...+++-+..+.-++-......+..+.++|.- |+|.+..+.+ |. ++.+++.++|.+++..+
T Consensus 271 g~~~~ei~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~i~~~~PiG~------------~~T~~~L~~la~~~g~~ 335 (519)
T 1qgu_B 271 GTTQQEMKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPATEVAIPLGL------------AATDELLMTVSQLSGKP 335 (519)
T ss_dssp CBCHHHHHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCCCCCCCCBSH------------HHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCeEecCCCcch------------HHHHHHHHHHHHHHCCC
Confidence 45666666555444443344456788888854 8999877554 21 35677888888888765
No 270
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=23.54 E-value=2.6e+02 Score=27.02 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=33.1
Q ss_pred CChHHHHhhcCEEEEc--cCCC---CCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLNP--STTD---VVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~p--S~~E---~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
.+.+++++.+|++++. ...+ -+.-..++.|.-|.-+|-+..++ ++ |.+++++++.+
T Consensus 190 ~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~--~v----------d~~aL~~aL~~ 250 (331)
T 1xdw_A 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQ--LV----------DTEAVIEAVES 250 (331)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcc--cc----------cHHHHHHHHHh
Confidence 3677999999977763 2222 24455677776666555554332 22 55666666654
No 271
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=23.48 E-value=69 Score=30.19 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCeEEEEee
Q 008544 71 LFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 71 ~~la~~L~~~Gg~eVtvit~ 90 (562)
..+++.|.++| |+|++++.
T Consensus 14 ~~L~~~L~~~G-~~V~~l~R 32 (298)
T 4b4o_A 14 TALTQLLNARG-HEVTLVSR 32 (298)
T ss_dssp HHHHHHHHHTT-CEEEEEES
T ss_pred HHHHHHHHHCC-CEEEEEEC
Confidence 46789999998 99999965
No 272
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=23.01 E-value=2.7e+02 Score=25.17 Aligned_cols=106 Identities=7% Similarity=-0.038 Sum_probs=59.7
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc--CCcEEee-CC
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM--GKIVVCA-NH 377 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~--G~PVI~t-~~ 377 (562)
.+++|+.+.+. .+.++......+..+.......+..+.+. ..|++++-- ..+.-|+.+++.+.. ..|||.- ..
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECC
Confidence 56666665332 34555555555543332222222222332 357666543 233446666666653 4666654 33
Q ss_pred CC----ccccccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 378 PS----NDFFKQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 378 ~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.. .+.+..|..+++.. +++++.++|..++....
T Consensus 118 ~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 118 DTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp CSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 32 45556788888874 89999999999887543
No 273
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=22.99 E-value=1.2e+02 Score=29.29 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
++++++-+-+. +.+..++.+++++. . ..+.+.++++. ..|+++..+....-.-.+.+|+..|++|++-.
T Consensus 27 ~~~~lvav~d~-~~~~~~~~a~~~~~-~---~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EK 97 (336)
T 2p2s_A 27 AGAELAGVFES-DSDNRAKFTSLFPS-V---PFAASAEQLITDASIDLIACAVIPCDRAELALRTLDAGKDFFTAK 97 (336)
T ss_dssp TTCEEEEEECS-CTTSCHHHHHHSTT-C---CBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCcEEEEEeCC-CHHHHHHHHHhcCC-C---cccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHHHCCCcEEEeC
Confidence 57888766552 33334455555532 1 23567888887 57887777654444556778999999999853
No 274
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=22.74 E-value=4.2e+02 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHhhcCcCCCcEEEecCCchh
Q 008544 153 ITEIIPDEEADIAVLEEPEHL 173 (562)
Q Consensus 153 l~~~i~~~~pDvV~~~~~~~~ 173 (562)
+.+++.+.++|+|++..|...
T Consensus 59 ~~~ll~~~~~D~V~i~tp~~~ 79 (330)
T 3e9m_A 59 YEELCKDETIDIIYIPTYNQG 79 (330)
T ss_dssp HHHHHHCTTCSEEEECCCGGG
T ss_pred HHHHhcCCCCCEEEEcCCCHH
Confidence 667777778999999988765
No 275
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.69 E-value=4.6e+02 Score=24.23 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEE-ccCCCCCcHHHHHHH
Q 008544 288 YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLN-PSTTDVVCTATAEAL 366 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~-pS~~E~~~~~~lEAm 366 (562)
+..+++.+.+..++. ++.+.+.....+.+...+.++. -.-..+|.+|+ |...+...-.+-++.
T Consensus 17 ~~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~---------------l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 17 WQKDRDIFVKKAESL-GAKVFVQSANGNEETQMSQIEN---------------MINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp THHHHHHHHHHHHHT-SCEEEEEECTTCHHHHHHHHHH---------------HHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCEEEEECCCCCHHHHHHHHHH---------------HHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 345555555554443 5666666654443322222111 01135675544 444444444566667
Q ss_pred HcCCcEEeeCCCCccccccCC-ceEeeCCHHHHHHHHHHHH
Q 008544 367 AMGKIVVCANHPSNDFFKQFP-NCRTYDGRNGFVEATLKAL 406 (562)
Q Consensus 367 a~G~PVI~t~~~~~e~v~~~~-~g~~~~d~~~la~~i~~ll 406 (562)
..|+|||+.+....+ .+. ..+..++.+.-..+.+.++
T Consensus 81 ~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 81 QEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred HCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 789999998875422 112 2233456666666666666
No 276
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=22.63 E-value=2.4e+02 Score=26.77 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEcc
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPS 353 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS 353 (562)
++++++...-...+-+.+++|.|.. -.-+..+....+..+.+. ....+..+..+.||++|...
T Consensus 148 v~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Av 212 (285)
T 3l07_A 148 IMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAV 212 (285)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECC
T ss_pred HHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECC
Confidence 3344443333345679999998763 555666666678777774 34678889999999999875
No 277
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=22.31 E-value=1.1e+02 Score=26.62 Aligned_cols=134 Identities=11% Similarity=0.086 Sum_probs=83.5
Q ss_pred ccEEEEEe-eccccCCHHHHHHHHHHHHHhcCCcEEEE---EeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCE
Q 008544 273 TKGAYYIG-RMVWSKGYEELLGLLNIYHKELAGLEMDL---YGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKV 348 (562)
Q Consensus 273 ~~~il~vG-r~~~~Kg~~~ll~a~~~l~~~~~~~~l~i---vG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv 348 (562)
+.+|+..| .+.-.|-...+-+....|.++.-+++|-| .|. ..-.+.-+..+.+..-......++..+-+...|+
T Consensus 23 ~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGR--MPGhMNVLLAEA~VPYd~v~EMdeIN~df~~tDv 100 (184)
T 1d4o_A 23 NSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGR--MPGQLNVLLAEAGVPYDIVLEMDEINHDFPDTDL 100 (184)
T ss_dssp SEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSS--STTHHHHHHHHHTCCGGGEEEHHHHGGGGGGCSE
T ss_pred CeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccccc--CCCcceEEEEEecCCHHHHHhHHHHhhhhhhcCE
Confidence 45566666 35566777778888888877766677665 343 3333333444444431111222344466778886
Q ss_pred EEE--------ccC-----CCCCcHHHHHHHHcCCcEEeeCC---C--C--ccccccCCceEeeCCHHHHHHHHHHHHhC
Q 008544 349 FLN--------PST-----TDVVCTATAEALAMGKIVVCANH---P--S--NDFFKQFPNCRTYDGRNGFVEATLKALAE 408 (562)
Q Consensus 349 ~v~--------pS~-----~E~~~~~~lEAma~G~PVI~t~~---~--~--~e~v~~~~~g~~~~d~~~la~~i~~ll~~ 408 (562)
.+. |.- +--+|++++|..-+..-+|.-+. | | +.++....+..++.|..+-.+.|...+..
T Consensus 101 ~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 101 VLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 653 431 12278889999888876666543 2 2 77787778888899998888888777653
No 278
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=22.09 E-value=1.5e+02 Score=29.98 Aligned_cols=70 Identities=7% Similarity=0.061 Sum_probs=48.8
Q ss_pred CCcEEEEEeCCCCHHHHHHHHHhcCCe-eEEeCCCCChHHHHh--hcCEEEEccCCCCCcHHHHHHHHcC------CcEE
Q 008544 303 AGLEMDLYGNGEDFDQIQRAAKKLKLV-VRVYPGRDHADPIFH--DYKVFLNPSTTDVVCTATAEALAMG------KIVV 373 (562)
Q Consensus 303 ~~~~l~ivG~g~~~~~l~~~~~~l~l~-~~~~~~~~~~~~l~~--~adv~v~pS~~E~~~~~~lEAma~G------~PVI 373 (562)
++++++-+-+ .+.+..++.+++.+.. +.+ +.+.++++. ..|+++..+....-.-.+.+|+..| ++|+
T Consensus 48 ~~~~lvav~d-~~~~~~~~~a~~~g~~~~~~---~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl 123 (438)
T 3btv_A 48 SQFQITALYS-PKIETSIATIQRLKLSNATA---FPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLF 123 (438)
T ss_dssp TTEEEEEEEC-SSHHHHHHHHHHTTCTTCEE---ESSHHHHHHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCeEEEEEEe-CCHHHHHHHHHHcCCCccee---eCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEE
Confidence 6788876665 4566677777777753 222 356788887 5788887765444455577899999 9999
Q ss_pred eeC
Q 008544 374 CAN 376 (562)
Q Consensus 374 ~t~ 376 (562)
+-.
T Consensus 124 ~EK 126 (438)
T 3btv_A 124 VEW 126 (438)
T ss_dssp EES
T ss_pred ecC
Confidence 864
No 279
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=22.05 E-value=2.7e+02 Score=27.26 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCeeEEeCCCCChH-HHHhh--cCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCC
Q 008544 316 FDQIQRAAKKLKLVVRVYPGRDHAD-PIFHD--YKVFLNPSTTDVVCTATAEALA-MGKIVVCANHP 378 (562)
Q Consensus 316 ~~~l~~~~~~l~l~~~~~~~~~~~~-~l~~~--adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~ 378 (562)
...+.+.+++.|+.+.- ..++... +++.. .|++=.+| .|-.-..++++++ .|+|||.+...
T Consensus 93 ~~~L~~~~~~~Gi~~~s-t~~d~~svd~l~~~~v~~~KI~S-~~~~n~~LL~~va~~gkPviLstGm 157 (349)
T 2wqp_A 93 EIKLKEYVESKGMIFIS-TLFSRAAALRLQRMDIPAYKIGS-GECNNYPLIKLVASFGKPIILSTGM 157 (349)
T ss_dssp HHHHHHHHHHTTCEEEE-EECSHHHHHHHHHHTCSCEEECG-GGTTCHHHHHHHHTTCSCEEEECTT
T ss_pred HHHHHHHHHHhCCeEEE-eeCCHHHHHHHHhcCCCEEEECc-ccccCHHHHHHHHhcCCeEEEECCC
Confidence 36677778888874322 2233222 55543 57888887 4456677888776 69999999764
No 280
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=21.93 E-value=1e+02 Score=28.45 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=56.5
Q ss_pred EEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC--HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEE-
Q 008544 276 AYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGED--FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFL- 350 (562)
Q Consensus 276 il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~--~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v- 350 (562)
|+=+|++ |...+++.+-.=+...+|+.+.++|+|.. .++.+...+.. -++-. .-|++|
T Consensus 8 iiKlGNi----gts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~-------------~~~~~~~~pDfvI~ 70 (283)
T 1qv9_A 8 FIKCGNL----GTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVEMA-------------LDIAEDFEPDFIVY 70 (283)
T ss_dssp EEECSCC----HHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHHHH-------------HHHHHHHCCSEEEE
T ss_pred EEEeccc----chHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHHHHh-------------hhhhhhcCCCEEEE
Confidence 3444555 44455555432234457899999999875 44444432210 00112 234444
Q ss_pred -EccCCCCCcHHHHHHH-HcCCcEEe-eCCCC---ccccccCCceEe
Q 008544 351 -NPSTTDVVCTATAEAL-AMGKIVVC-ANHPS---NDFFKQFPNCRT 391 (562)
Q Consensus 351 -~pS~~E~~~~~~lEAm-a~G~PVI~-t~~~~---~e~v~~~~~g~~ 391 (562)
.|.-.-.-|...-|.+ +.|+|+|. +|.++ .+.+++..-|++
T Consensus 71 isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~g~GYI 117 (283)
T 1qv9_A 71 GGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQGLGYI 117 (283)
T ss_dssp ECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHTTCEEE
T ss_pred ECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhcCCcEE
Confidence 4444445677788887 58899655 57776 667777777877
No 281
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=21.92 E-value=69 Score=30.46 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=33.7
Q ss_pred hhhccCCeEEEEec--cc-----CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 44 LMDRKQQHIAIFTT--AS-----LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 44 ~m~~~~~rI~ivt~--~~-----~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
.|+.+++++|+|.. .| ++...|+..-...+.+.|.+.| ++|++..
T Consensus 38 ~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG-F~V~~~~ 89 (277)
T 4ehd_A 38 KMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK-YEVRNKN 89 (277)
T ss_dssp CCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred cCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 47777788887772 22 3456787777888889999998 9998873
No 282
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.90 E-value=3e+02 Score=21.73 Aligned_cols=106 Identities=9% Similarity=-0.026 Sum_probs=58.7
Q ss_pred cEEEEEeCCCC-HHHHHHHHHhcCCeeEEeCCCCChHHHHh--hcCEEEEcc-CCCCCcHHHHHHHHc-----CCcEEee
Q 008544 305 LEMDLYGNGED-FDQIQRAAKKLKLVVRVYPGRDHADPIFH--DYKVFLNPS-TTDVVCTATAEALAM-----GKIVVCA 375 (562)
Q Consensus 305 ~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~~~~~~~~~l~~--~adv~v~pS-~~E~~~~~~lEAma~-----G~PVI~t 375 (562)
.+++++.+.+. .+.++...+..+..+.......+..+.+. ..|+++.-- ..+.-|..+++.+.. .+|||..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML 83 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 45666665333 35566666666655443332222223333 357766543 334457788888753 5677654
Q ss_pred -CCCC--cccc--ccCCceEeeC--CHHHHHHHHHHHHhCCC
Q 008544 376 -NHPS--NDFF--KQFPNCRTYD--GRNGFVEATLKALAEEP 410 (562)
Q Consensus 376 -~~~~--~e~v--~~~~~g~~~~--d~~~la~~i~~ll~~~~ 410 (562)
.... .... ..+..+++.. +.+++.++|..++....
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 3332 1222 2234577764 78899999999886543
No 283
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=21.74 E-value=3.2e+02 Score=26.26 Aligned_cols=108 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhccCCC
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRTGFT 128 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (562)
+|||+++.+ ......-.+.|.+.| |+|..+.+ .|+.-.-.........+..+ ....-.
T Consensus 2 ~mrivf~Gt---------p~fa~~~L~~L~~~~-~~v~~Vvt----------~pd~~~grg~~l~~~~v~~~--A~~~gI 59 (314)
T 3tqq_A 2 SLKIVFAGT---------PQFAVPTLRALIDSS-HRVLAVYT----------QPDRPSGRGQKIMESPVKEI--ARQNEI 59 (314)
T ss_dssp CCEEEEEEC---------SGGGHHHHHHHHHSS-SEEEEEEC----------CCC----------CCHHHHH--HHHTTC
T ss_pred CcEEEEECC---------CHHHHHHHHHHHHCC-CeEEEEEe----------CCCCccccCCccCCCHHHHH--HHHcCC
Q ss_pred CCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEc
Q 008544 129 STFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVH 194 (562)
Q Consensus 129 ~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h 194 (562)
+-+....+.. ..+.+.+++.+||++++...... + ...+....+.-+..+|
T Consensus 60 pv~~~~~~~~------------~~~~~~l~~~~~Dliv~~~~~~i--l--p~~il~~~~~g~iNiH 109 (314)
T 3tqq_A 60 PIIQPFSLRD------------EVEQEKLIAMNADVMVVVAYGLI--L--PKKALNAFRLGCVNVH 109 (314)
T ss_dssp CEECCSCSSS------------HHHHHHHHTTCCSEEEEESCCSC--C--CHHHHTSSTTCEEEEE
T ss_pred CEECcccCCC------------HHHHHHHHhcCCCEEEEcCcccc--c--CHHHHhhCcCCEEEec
No 284
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.67 E-value=4.9e+02 Score=24.18 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCCCCChHHHHhhcCEEEEcc-CCCCCcHHHHHHH
Q 008544 288 YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPGRDHADPIFHDYKVFLNPS-TTDVVCTATAEAL 366 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~~~~~~~l~~~adv~v~pS-~~E~~~~~~lEAm 366 (562)
+..+++.+....++. ++.+.+.....+.+.-.+.++. -+-+..|.+|+.+ ..+...-.+-++.
T Consensus 18 ~~~~~~gi~~~a~~~-g~~~~~~~~~~~~~~~~~~i~~---------------~~~~~vdgiIi~~~~~~~~~~~~~~~~ 81 (330)
T 3uug_A 18 WIDDGNNIVKQLQEA-GYKTDLQYADDDIPNQLSQIEN---------------MVTKGVKVLVIASIDGTTLSDVLKQAG 81 (330)
T ss_dssp HHHHHHHHHHHHHHT-TCEEEEEECTTCHHHHHHHHHH---------------HHHHTCSEEEECCSSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCEEEEeeCCCCHHHHHHHHHH---------------HHHcCCCEEEEEcCCchhHHHHHHHHH
Confidence 445556665554443 5666666654443322222111 1123567555543 3334444567778
Q ss_pred HcCCcEEeeCCCCccccccCCceEe-eCCHHHHHHHHHHHHh
Q 008544 367 AMGKIVVCANHPSNDFFKQFPNCRT-YDGRNGFVEATLKALA 407 (562)
Q Consensus 367 a~G~PVI~t~~~~~e~v~~~~~g~~-~~d~~~la~~i~~ll~ 407 (562)
..|+|||..+....+. .....++ .++.+.-..+.+.+++
T Consensus 82 ~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 82 EQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp HTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred HCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 8999999998754221 1122233 4666665566666655
No 285
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=21.62 E-value=3.1e+02 Score=21.81 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=36.6
Q ss_pred cCEEEEcc-CCCCCcHHHHHHHH---cCCcEEee-CCCC----ccccccCCceEeeC--CHHHHHHHHHHHHh
Q 008544 346 YKVFLNPS-TTDVVCTATAEALA---MGKIVVCA-NHPS----NDFFKQFPNCRTYD--GRNGFVEATLKALA 407 (562)
Q Consensus 346 adv~v~pS-~~E~~~~~~lEAma---~G~PVI~t-~~~~----~e~v~~~~~g~~~~--d~~~la~~i~~ll~ 407 (562)
.|+++.-. ..+.-|..+++.+. ...|||.- .... .+.+..|..+++.. +.+++.++|..++.
T Consensus 50 ~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 50 PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 57776543 23345667777664 46777655 3322 44556677788864 89999999988764
No 286
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=21.58 E-value=3.2e+02 Score=26.70 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=36.3
Q ss_pred CChHHHHhhcCEEEEc--cCCC---CCcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLNP--STTD---VVCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~p--S~~E---~~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
++.+++++.+|++++. ...+ -+.-..++.|--|.-+|-+..|+ ++ |.+++++++.+
T Consensus 212 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~--~v----------de~aL~~aL~~ 272 (351)
T 3jtm_A 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA--IM----------ERQAVVDAVES 272 (351)
T ss_dssp SCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGG--GB----------CHHHHHHHHHH
T ss_pred CCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCch--hh----------CHHHHHHHHHh
Confidence 5788999999987763 2223 35667788887777666665432 22 56666666653
No 287
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=21.53 E-value=1.4e+02 Score=26.86 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=49.1
Q ss_pred CcEEEEEe--CC--CC---HHHHHHHHHhcCCeeEEeC----CCCChHHHHhhcCEEEEccCCCC-----------CcHH
Q 008544 304 GLEMDLYG--NG--ED---FDQIQRAAKKLKLVVRVYP----GRDHADPIFHDYKVFLNPSTTDV-----------VCTA 361 (562)
Q Consensus 304 ~~~l~ivG--~g--~~---~~~l~~~~~~l~l~~~~~~----~~~~~~~l~~~adv~v~pS~~E~-----------~~~~ 361 (562)
.-++.++. .+ +. .+.+++..+++|.++.+.. ..++..+.+..+|..++|- .+. +--.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~ 105 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKL 105 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHH
Confidence 45677765 33 11 2566677788888766642 2222337788999999985 322 2335
Q ss_pred HHHHHHcCCcEEeeCCCC
Q 008544 362 TAEALAMGKIVVCANHPS 379 (562)
Q Consensus 362 ~lEAma~G~PVI~t~~~~ 379 (562)
+-|+...|+|++.+-.|.
T Consensus 106 l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 106 ILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp HHHHHHTTCEEEEETHHH
T ss_pred HHHHHHcCCeEEEECHHH
Confidence 778888999999987764
No 288
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=21.52 E-value=5.1e+02 Score=24.31 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=72.4
Q ss_pred EEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEe-------------CCCC-HHHHHHHHHhcCCeeEE-eCCCCChHH
Q 008544 277 YYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYG-------------NGED-FDQIQRAAKKLKLVVRV-YPGRDHADP 341 (562)
Q Consensus 277 l~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG-------------~g~~-~~~l~~~~~~l~l~~~~-~~~~~~~~~ 341 (562)
+.++........+..++.+..+++..-+ ++-++ .|.+ .+.+++.+++.|+.+-- .....+.+.
T Consensus 40 ~vIAgpc~~~~~e~a~~~a~~~k~~ga~--~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~ 117 (276)
T 1vs1_A 40 AVIAGPCSVESWEQVREAALAVKEAGAH--MLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLDPRHVET 117 (276)
T ss_dssp EEEEECSBCCCHHHHHHHHHHHHHHTCS--EEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEECCCGGGHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHhCCC--EEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHH
Confidence 3445455667888888888887766433 22222 1111 35677778888886543 223334444
Q ss_pred HHhhcCEEEEccCCCCCcHHHHHHHH-cCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHHHHhCC
Q 008544 342 IFHDYKVFLNPSTTDVVCTATAEALA-MGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLKALAEE 409 (562)
Q Consensus 342 l~~~adv~v~pS~~E~~~~~~lEAma-~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ll~~~ 409 (562)
+....|++=.+|.. .....+++++| .|+||+.++..+ .+.+++..+++.+.+..
T Consensus 118 l~~~vd~~kIgs~~-~~n~~ll~~~a~~~kPV~lk~G~~-------------~t~~ei~~Ave~i~~~G 172 (276)
T 1vs1_A 118 VSRYADMLQIGARN-MQNFPLLREVGRSGKPVLLKRGFG-------------NTVEELLAAAEYILLEG 172 (276)
T ss_dssp HHHHCSEEEECGGG-TTCHHHHHHHHHHTCCEEEECCTT-------------CCHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEECccc-ccCHHHHHHHHccCCeEEEcCCCC-------------CCHHHHHHHHHHHHHcC
Confidence 44458999999852 33445555554 799999997632 26778888888777643
No 289
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=21.50 E-value=85 Score=29.70 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=31.2
Q ss_pred CCeEEEEecccCC-----CcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 49 QQHIAIFTTASLP-----WLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 49 ~~rI~ivt~~~~P-----~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
.++|+|+|-++.| +..| ..-...+++.|...| .+|++++.
T Consensus 41 ~~~vlI~TGFpv~~~~~~ETDG-P~GA~ala~aL~~lG-~~~~ivt~ 85 (270)
T 4fc5_A 41 LERVLIVTGFPIPPMMVAETDG-PPGALAIYRAVEMLG-GKAEILTY 85 (270)
T ss_dssp CTTEEEEECCCBTTTTBCBSSS-HHHHHHHHHHHHHTT-CCEEEECC
T ss_pred CCceEEEeCcccCCCCCcccCC-cHHHHHHHHHHHHcC-CceEEEec
Confidence 3689999876644 4556 556788999999998 99999975
No 290
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=21.50 E-value=2.7e+02 Score=26.46 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEccC
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPST 354 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS~ 354 (562)
++++++...-...+-+.+++|.+.. -.-+..+....+..+.+. ....+..+..+.||++|...-
T Consensus 147 v~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 147 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSS
T ss_pred HHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCC
Confidence 3444443333345689999998764 455556666678777774 446788899999999998753
No 291
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=21.34 E-value=99 Score=27.19 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=30.3
Q ss_pred hhccC--CeEEEE-ecc-c--CCCcccccccHHHHHHHHHHcCCCeEEEEe
Q 008544 45 MDRKQ--QHIAIF-TTA-S--LPWLTGTAVNPLFRAAYLAKDGERRVTLVI 89 (562)
Q Consensus 45 m~~~~--~rI~iv-t~~-~--~P~~~G~a~~~~~la~~L~~~Gg~eVtvit 89 (562)
|+.++ +++|+| +.. | .+...|+..-...+.+.|.+.| ++|++..
T Consensus 36 m~~~~~~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~Lg-F~V~~~~ 85 (178)
T 2h54_A 36 IMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG-YSVDVKK 85 (178)
T ss_dssp CCCTTTCCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CCCCCCcCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 55433 566555 443 2 2456687788888889999998 9998874
No 292
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=21.32 E-value=2.8e+02 Score=26.34 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEcc
Q 008544 292 LGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPS 353 (562)
Q Consensus 292 l~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS 353 (562)
+++++...-...+-+.+++|.+.. -.-+..+....+..+.+. ....+..+..+.||++|...
T Consensus 149 ~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Av 212 (286)
T 4a5o_A 149 MTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAA 212 (286)
T ss_dssp HHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECC
T ss_pred HHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECC
Confidence 344433322334679999998653 455566666678778774 44678889999999999875
No 293
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=21.19 E-value=42 Score=27.54 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=24.9
Q ss_pred chhhccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEE
Q 008544 43 SLMDRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVT 86 (562)
Q Consensus 43 ~~m~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVt 86 (562)
+.|+.+++||++|-+.. . ....+...|.+.| |+|+
T Consensus 2 s~m~~r~~rILiVdD~~--~------~~~~l~~~L~~~G-~~v~ 36 (123)
T 2lpm_A 2 SHMTERRLRVLVVEDES--M------IAMLIEDTLCELG-HEVA 36 (123)
T ss_dssp CCCCCCCCCEEEESSST--T------TSHHHHHHHHHHC-CCCC
T ss_pred CCCCCCCCEEEEEeCCH--H------HHHHHHHHHHHCC-CEEE
Confidence 46888889999998753 1 2234667788887 8864
No 294
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=21.10 E-value=3.7e+02 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=21.3
Q ss_pred hcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 345 DYKVFLNPSTTDVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 345 ~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
..|.+|+....+...-.+-++...|+|||+.+...
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 67865554322222333445667899999997754
No 295
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=20.86 E-value=1.5e+02 Score=26.82 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=30.3
Q ss_pred CChHHHH-hhcCEEEEccCCCCCcHHHHHHHHcCCcEEeeCCC
Q 008544 337 DHADPIF-HDYKVFLNPSTTDVVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 337 ~~~~~l~-~~adv~v~pS~~E~~~~~~lEAma~G~PVI~t~~~ 378 (562)
.+.++++ ..+|+.+..+..+..--.+.+++..|++||+...+
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~ 83 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTG 83 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECcc
Confidence 4567777 58898887765444344467899999999998654
No 296
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.82 E-value=1.9e+02 Score=24.66 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHh-cCCeeEEeCCCC-ChHHHHhhcCEEEEc
Q 008544 288 YEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKK-LKLVVRVYPGRD-HADPIFHDYKVFLNP 352 (562)
Q Consensus 288 ~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~-l~l~~~~~~~~~-~~~~l~~~adv~v~p 352 (562)
+...++++... ...|.-+++-|+++ ...+-+.+++ +|..+.+++... ...++.+.||-|+.-
T Consensus 96 v~laiD~~~~a--~~~d~~vLvSgD~D-F~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 96 VGITLDAIEIA--PDVDRVILVSGDGD-FSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp HHHHHHHHHHG--GGCSEEEEECCCGG-GHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred HHHHHHHHHhh--ccCCEEEEEECChh-HHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 34667777653 34466666667764 4444445566 598888776533 345788999988753
No 297
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=20.74 E-value=3.5e+02 Score=25.68 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEccC
Q 008544 291 LLGLLNIYHKELAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPST 354 (562)
Q Consensus 291 ll~a~~~l~~~~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS~ 354 (562)
++++++...-...+-+.+++|.|.- -.-+..+....+-.+.+. ....+..+..+.||++|...-
T Consensus 146 i~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 146 IVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSC
T ss_pred HHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCC
Confidence 4444444333445689999999864 455566666677777774 456788899999999998754
No 298
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=20.67 E-value=3.5e+02 Score=26.11 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=27.8
Q ss_pred ChHHHHhhcCEEEEc--cCCC---CCcHHHHHHHHcCCcEEeeCCC
Q 008544 338 HADPIFHDYKVFLNP--STTD---VVCTATAEALAMGKIVVCANHP 378 (562)
Q Consensus 338 ~~~~l~~~adv~v~p--S~~E---~~~~~~lEAma~G~PVI~t~~~ 378 (562)
+.+++++.+|+.++. ...+ -+.-..++.|.-|.-+|-+..+
T Consensus 190 ~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg 235 (333)
T 1dxy_A 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 235 (333)
T ss_dssp CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred CHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCC
Confidence 677999999977754 2222 2555678888777766666554
No 299
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=20.65 E-value=1.8e+02 Score=28.16 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred hcCCcEEEEEeCCCCHHHHHHHHHhcCC-eeEEeCCCCChHHHHhh--cCEEEEccCCCCCcHHHHHHHHcCCcEEeeC
Q 008544 301 ELAGLEMDLYGNGEDFDQIQRAAKKLKL-VVRVYPGRDHADPIFHD--YKVFLNPSTTDVVCTATAEALAMGKIVVCAN 376 (562)
Q Consensus 301 ~~~~~~l~ivG~g~~~~~l~~~~~~l~l-~~~~~~~~~~~~~l~~~--adv~v~pS~~E~~~~~~lEAma~G~PVI~t~ 376 (562)
..|+++++-+-+....+ +.+++.+. .+.+ +.+.++++.. .|+++..+....-.-.+.+|+..|++|++-.
T Consensus 24 ~~~~~~l~av~d~~~~~---~~a~~~~~~~~~~---~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EK 96 (349)
T 3i23_A 24 IRETLEVKTIFDLHVNE---KAAAPFKEKGVNF---TADLNELLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEK 96 (349)
T ss_dssp TCTTEEEEEEECTTCCH---HHHHHHHTTTCEE---ESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred hCCCeEEEEEECCCHHH---HHHHhhCCCCCeE---ECCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHcCCEEEEEC
Confidence 46789988777644222 33333221 1222 3567788875 7888877655444555789999999999843
No 300
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=20.61 E-value=3.9e+02 Score=25.16 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=39.4
Q ss_pred cCCcEEEEEeCCCC-HHHHHHHHHhcCCeeEEe-CCCCChHHHHhhcCEEEEcc
Q 008544 302 LAGLEMDLYGNGED-FDQIQRAAKKLKLVVRVY-PGRDHADPIFHDYKVFLNPS 353 (562)
Q Consensus 302 ~~~~~l~ivG~g~~-~~~l~~~~~~l~l~~~~~-~~~~~~~~l~~~adv~v~pS 353 (562)
..+-+.+++|.|.. -.-+..+....|..+.+. ....+..+..+.||++|...
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECS
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECC
Confidence 45789999998763 455555666678777774 44678889999999999875
No 301
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.46 E-value=2e+02 Score=26.14 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=64.5
Q ss_pred cEEEEEeeccccCCHHHHHHHHHHHHHhcCCcEEEEEeCCCCHHHHHHHHHhcCCeeEEeCC-CCChHHHHhhcCEEEEc
Q 008544 274 KGAYYIGRMVWSKGYEELLGLLNIYHKELAGLEMDLYGNGEDFDQIQRAAKKLKLVVRVYPG-RDHADPIFHDYKVFLNP 352 (562)
Q Consensus 274 ~~il~vGr~~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~g~~~~~l~~~~~~l~l~~~~~~~-~~~~~~l~~~adv~v~p 352 (562)
..++.+|. | +.....+..|.+. +.++.++-.. ..++++++++..+ +.+..+ +. ++.+..+|+++..
T Consensus 32 k~VLVVGg-----G-~va~~ka~~Ll~~--GA~VtVvap~-~~~~l~~l~~~~~--i~~i~~~~~--~~dL~~adLVIaA 98 (223)
T 3dfz_A 32 RSVLVVGG-----G-TIATRRIKGFLQE--GAAITVVAPT-VSAEINEWEAKGQ--LRVKRKKVG--EEDLLNVFFIVVA 98 (223)
T ss_dssp CCEEEECC-----S-HHHHHHHHHHGGG--CCCEEEECSS-CCHHHHHHHHTTS--CEEECSCCC--GGGSSSCSEEEEC
T ss_pred CEEEEECC-----C-HHHHHHHHHHHHC--CCEEEEECCC-CCHHHHHHHHcCC--cEEEECCCC--HhHhCCCCEEEEC
Confidence 44556663 2 3344445555555 4666677653 3456777776544 344322 32 3446788987766
Q ss_pred cCCCCCcHHHHHHHHcCCcEEeeCCCC------ccccccCCceEeeC---CHHHHHHHHHHHHh
Q 008544 353 STTDVVCTATAEALAMGKIVVCANHPS------NDFFKQFPNCRTYD---GRNGFVEATLKALA 407 (562)
Q Consensus 353 S~~E~~~~~~lEAma~G~PVI~t~~~~------~e~v~~~~~g~~~~---d~~~la~~i~~ll~ 407 (562)
+-.+.....+.++...|+||-+.|.+. +.++..++--+-+. ..-.++..|.+-++
T Consensus 99 T~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie 162 (223)
T 3dfz_A 99 TNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLS 162 (223)
T ss_dssp CCCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 545455555666555899999988863 44444444333332 34456666665553
No 302
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=20.42 E-value=4.1e+02 Score=25.48 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hccCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEeecCCccccccccCCCceeCCchhhHHHHHHHhhhcc
Q 008544 46 DRKQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIPWLSLIHQKQVYPGNITFASPKEQEAYVRWWLEDRT 125 (562)
Q Consensus 46 ~~~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~ 125 (562)
+++.|||+|+ |+......-.+.|.+.| |+|..+.+ ......-.+.........+.-...- ..+
T Consensus 1 ~~~mmrIvf~---------Gtp~fa~~~L~~L~~~~-~~v~~Vvt-----~pd~~~gRg~~l~~~pv~~~A~~~g--Ipv 63 (317)
T 3rfo_A 1 SNAMIKVVFM---------GTPDFSVPVLRRLIEDG-YDVIGVVT-----QPDRPVGRKKVLTPTPVKVEAEKHG--IPV 63 (317)
T ss_dssp CCTTSEEEEE---------CCSTTHHHHHHHHHHTT-CEEEEEEC-----CCCCEETTTTEECCCHHHHHHHHTT--CCE
T ss_pred CCCceEEEEE---------eCCHHHHHHHHHHHHCC-CcEEEEEe-----CCCcccCCCcccCCCHHHHHHHHcC--CCE
Q ss_pred CCCCCcccccccccchhccchhhhHHhHHhhcCcCCCcEEEecCCchhhhhhchHHHHhhcCCEEEEEc
Q 008544 126 GFTSTFDTRFYPGKFAADKKSILAVGDITEIIPDEEADIAVLEEPEHLTWFHHGKRWKAKFRFVVGIVH 194 (562)
Q Consensus 126 ~~~~~~~i~~y~~r~~~~~~~~~~~~~l~~~i~~~~pDvV~~~~~~~~~~~~~~~~~~~~~~~vi~~~h 194 (562)
....+++-.. ..+.+++.+||++++.....+ + ...+....+.-+..+|
T Consensus 64 ~~~~~~~~~~-----------------~~~~l~~~~~Dliv~~~y~~i--l--p~~~l~~~~~g~iNiH 111 (317)
T 3rfo_A 64 LQPLRIREKD-----------------EYEKVLALEPDLIVTAAFGQI--V--PNEILEAPKYGCINVH 111 (317)
T ss_dssp ECCSCTTSHH-----------------HHHHHHHHCCSEEEESSCCSC--C--CHHHHHSSTTCEEEEE
T ss_pred EccccCCCHH-----------------HHHHHHhcCCCEEEEcCchhh--C--CHHHHhhCcCCEEEEC
No 303
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=20.38 E-value=68 Score=32.90 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=28.0
Q ss_pred CCeEEEEecccCCCcccccccHHHHHHHHHHc--CCCeEEEEeec
Q 008544 49 QQHIAIFTTASLPWLTGTAVNPLFRAAYLAKD--GERRVTLVIPW 91 (562)
Q Consensus 49 ~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~--Gg~eVtvit~~ 91 (562)
++||+++.-.. .|--.-.+.+++.|+++ | |+||++++.
T Consensus 9 ~~~vv~~p~p~----~GHi~P~l~La~~L~~r~pG-~~Vt~v~t~ 48 (463)
T 2acv_A 9 NSELIFIPAPG----IGHLASALEFAKLLTNHDKN-LYITVFCIK 48 (463)
T ss_dssp CEEEEEECCSS----TTTHHHHHHHHHHHHHTCTT-EEEEEEECC
T ss_pred CCEEEEEcCcc----cchHHHHHHHHHHHHhcCCC-cEEEEEEcC
Confidence 36898885422 34344467899999998 7 999999873
No 304
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=20.33 E-value=93 Score=31.69 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=28.4
Q ss_pred CChHHHHhhcCEEEEccCC-CCCcHHHHHHHHcCCcEEeeCCCC
Q 008544 337 DHADPIFHDYKVFLNPSTT-DVVCTATAEALAMGKIVVCANHPS 379 (562)
Q Consensus 337 ~~~~~l~~~adv~v~pS~~-E~~~~~~lEAma~G~PVI~t~~~~ 379 (562)
.+.++++..+|+++..+-. ..+.-..++.|.-|.-+|....+.
T Consensus 258 ~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~ 301 (436)
T 3h9u_A 258 LLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFD 301 (436)
T ss_dssp CCHHHHTTTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSG
T ss_pred cCHHHHHhhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCC
Confidence 3678999999999976532 224445677777776666655443
No 305
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=20.31 E-value=2.2e+02 Score=29.33 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=23.7
Q ss_pred cCCeEEEEecccCCCcccccccHHHHHHHHHHcCCCeEEEEee
Q 008544 48 KQQHIAIFTTASLPWLTGTAVNPLFRAAYLAKDGERRVTLVIP 90 (562)
Q Consensus 48 ~~~rI~ivt~~~~P~~~G~a~~~~~la~~L~~~Gg~eVtvit~ 90 (562)
..+||+|+.+. ...+.+++.|.+.| .+|..+..
T Consensus 331 ~GKrv~i~~~~---------~~~~~l~~~L~ElG-mevv~~gt 363 (483)
T 3pdi_A 331 EGKRVLLYTGG---------VKSWSVVSALQDLG-MKVVATGT 363 (483)
T ss_dssp TTCEEEEECSS---------SCHHHHHHHHHHHT-CEEEEECB
T ss_pred cCCEEEEECCC---------chHHHHHHHHHHCC-CEEEEEec
Confidence 45799987653 24566888898998 88877644
No 306
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*
Probab=20.24 E-value=3.4e+02 Score=26.45 Aligned_cols=56 Identities=7% Similarity=0.098 Sum_probs=31.8
Q ss_pred CChHHHHhhcCEEEEc--cCCCC---CcHHHHHHHHcCCcEEeeCCCCccccccCCceEeeCCHHHHHHHHHH
Q 008544 337 DHADPIFHDYKVFLNP--STTDV---VCTATAEALAMGKIVVCANHPSNDFFKQFPNCRTYDGRNGFVEATLK 404 (562)
Q Consensus 337 ~~~~~l~~~adv~v~p--S~~E~---~~~~~lEAma~G~PVI~t~~~~~e~v~~~~~g~~~~d~~~la~~i~~ 404 (562)
.+.+++++.+|++++. ...+. +.-..++.|.-|.-+|-+..++ .+ |.+++++++.+
T Consensus 215 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~--~v----------d~~aL~~aL~~ 275 (347)
T 1mx3_A 215 STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG--LV----------DEKALAQALKE 275 (347)
T ss_dssp SSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTT--SB----------CHHHHHHHHHH
T ss_pred CCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCCh--HH----------hHHHHHHHHHh
Confidence 4678999999977753 22222 4444555555554444443322 22 66777777665
Done!