BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008548
(562 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana
GN=OEP80 PE=1 SV=1
Length = 732
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/666 (56%), Positives = 429/666 (64%), Gaps = 132/666 (19%)
Query: 1 MAQKNDDARFTSSPLKIPRFQP----------QPPLPFFAETLTESKNSLSHQIHSLRTR 50
M NDD RF+SS ++I P Q F L+ ++NSL+ + SL+ R
Sbjct: 1 MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60
Query: 51 SDESTQSTELTQPESLTRKLQLFAERAYGNSARVC-SMYPSTTGAG--------ETLVNL 101
+S + +P T+ L + G S+ + S+ ST ET+ L
Sbjct: 61 HTPPPRS--VRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGL 118
Query: 102 --PLLCSAWMSLSQSTTSESAALPEVSSTQLQQKAQQQPHSVSRSDEERVLISEVLVRNK 159
PLLC A +SL++ +ES E T QQK HSVSR+ EERVLISEVLVR K
Sbjct: 119 SSPLLCCASLSLTRP--NESTQSVEGKDTVQQQKG----HSVSRNAEERVLISEVLVRTK 172
Query: 160 DGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRII-------------------- 199
DGEELERK L EAL LKAC ANSALT+REVQEDV+RII
Sbjct: 173 DGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIR 232
Query: 200 --------------------------------DG-GKIINIRRLDEVITSINGWYMEHGL 226
DG GK+INI+RL+E ITSINGWYME GL
Sbjct: 233 LMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGL 292
Query: 227 FGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQV 286
FG+VS ++ LSGG++RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQV
Sbjct: 293 FGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQV 352
Query: 287 YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGIT 346
YSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+ VDLI+N VERPSGGFSAGGGISSGIT
Sbjct: 353 YSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGIT 412
Query: 347 SGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMV 406
SGPLSGLIGSF YSHRN+FGRNQKLN+SLERGQIDSI RINY DPWIEGDDK+TSR++MV
Sbjct: 413 SGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMV 472
Query: 407 QNSRTPGPLVHRNQPDNSSQTIGR------------------------RAGSHDEKGNPI 442
QNSRTPG LVH NQPDNSS TIGR AG+ DE+GNPI
Sbjct: 473 QNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPI 532
Query: 443 IKDFYSSPLYRK--------------------------FVFDMEQGLPVLPKWLFFNRVN 476
IKDFYSSPL F F+MEQGLPVLP+WL FNRV
Sbjct: 533 IKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVT 592
Query: 477 AHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSG 536
ARKG+ I AR +LSGGHV+G F PHEAF IGGTNSVRGYEEGAVGSGRSYVVGSG
Sbjct: 593 GRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSG 652
Query: 537 EITFPM 542
E++FP+
Sbjct: 653 ELSFPV 658
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
japonica GN=OEP80 PE=3 SV=2
Length = 665
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/501 (58%), Positives = 340/501 (67%), Gaps = 104/501 (20%)
Query: 146 EERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRII------ 199
EERVLISEV VR KDGE LER L A L+AC N+ALTVREVQEDV+R++
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 200 ----------DG-------------------------------------GKIINIRRLDE 212
DG GKIINIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 213 VITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 272
VI S+NGWY E GL GLVS EILSGG++RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 273 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPS 332
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD++ VDL++N+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 333 GGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPW 392
GGFSAGGGISSGIT+GPLSGLIGSF YSHRNVFGRN+KLN+SLERGQIDSI R+NY DPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 393 IEGDDKQTSRTMMVQNSRTPGPLVHR-NQPDNSSQTIGR--------------------- 430
I+GD+K+TSRT+MVQNSRTPG L+H + PD+ TIGR
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 431 ---RAGSHDEKGNPIIKDFYSSPLYRK--------------------------FVFDMEQ 461
AG+ D+KGNPII+DFY+S L FVF++EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 462 GLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYE 521
GLP+LP+WL FNRV A R+G +I ARL L+ SGGHV GNF PHEAFAIGGTNSVRGYE
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYE 570
Query: 522 EGAVGSGRSYVVGSGEITFPM 542
EGAVGSGRSY VGSGE++ M
Sbjct: 571 EGAVGSGRSYAVGSGEVSCRM 591
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp.
indica GN=OEP80 PE=3 SV=1
Length = 665
Score = 528 bits (1361), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/501 (58%), Positives = 340/501 (67%), Gaps = 104/501 (20%)
Query: 146 EERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRII------ 199
EERVLISEV VR KDGE LER L A L+AC N+ALTVREVQEDV+R++
Sbjct: 91 EERVLISEVAVRGKDGEPLERPELEAAAAAALRACRPNAALTVREVQEDVHRVVESGLFR 150
Query: 200 ----------DG-------------------------------------GKIINIRRLDE 212
DG GKIINIR LD+
Sbjct: 151 SCMPVAVDTRDGIRLVFEVEPNQDFHGLVCEGANMLPSKFLEDAFHDRHGKIINIRHLDQ 210
Query: 213 VITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRP 272
VI S+NGWY E GL GLVS EILSGG++RLQV+EAEVNNI+IRFLDR+TGEPT GKT+P
Sbjct: 211 VIKSVNGWYQERGLTGLVSYAEILSGGILRLQVSEAEVNNINIRFLDRRTGEPTVGKTQP 270
Query: 273 ETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPS 332
ETILR LTTKKGQ Y+ Q KRDVET+LTMGIMEDV+IIPQP GD++ VDL++N+VERPS
Sbjct: 271 ETILRHLTTKKGQAYNRAQVKRDVETILTMGIMEDVTIIPQPVGDSNKVDLVMNLVERPS 330
Query: 333 GGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPW 392
GGFSAGGGISSGIT+GPLSGLIGSF YSHRNVFGRN+KLN+SLERGQIDSI R+NY DPW
Sbjct: 331 GGFSAGGGISSGITNGPLSGLIGSFAYSHRNVFGRNKKLNLSLERGQIDSIFRLNYTDPW 390
Query: 393 IEGDDKQTSRTMMVQNSRTPGPLVHR-NQPDNSSQTIGR--------------------- 430
I+GD+K+TSRT+MVQNSRTPG L+H + PD+ TIGR
Sbjct: 391 IDGDNKRTSRTIMVQNSRTPGTLIHGGDHPDHGPITIGRVTAGIEYSRPFRPKWSGTLGL 450
Query: 431 ---RAGSHDEKGNPIIKDFYSSPLYRK--------------------------FVFDMEQ 461
AG+ D+KGNPII+DFY+S L FVF++EQ
Sbjct: 451 IFQHAGARDDKGNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
Query: 462 GLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYE 521
GLP+LP+WL FNRV A R+G +I ARL L+ SGGHV GNF PHEAFAIGGTNSVRGYE
Sbjct: 511 GLPILPEWLSFNRVTARLRQGYEIGPARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYE 570
Query: 522 EGAVGSGRSYVVGSGEITFPM 542
EGAVGSGRSY VGSGE++ M
Sbjct: 571 EGAVGSGRSYAVGSGEVSCRM 591
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1
Length = 809
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 29/256 (11%)
Query: 182 ANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-------FGLVSGVE 234
A L V E++ ++ ++ R L ++ + WY E G FG ++ E
Sbjct: 288 ARPCLLPTSVHEEIKDMLAEQGRVSARLLQKIRDRVQSWYHEEGYACAQVVNFGNLNTRE 347
Query: 235 ILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTK--KGQVYSMLQG 292
++ +V E ++ +SI++LD K G +G T + R+L + G +++ G
Sbjct: 348 VVC------EVVEGDITKLSIQYLD-KLGNVVEGNTEGPVVQRELPKQLLPGHTFNIEAG 400
Query: 293 KRDVETVLTMGIMEDVSIIPQP---AGDTSMVDLILNVVERPSGGFSAGGGISSGITSGP 349
K+ + + ++ + ++ + P+P + +V++ L +E+ S S I G P
Sbjct: 401 KQALRNINSLALFSNIEVNPRPDEMNEGSIIVEIKLKELEQKSAEVSTEWSIVPGRGGRP 460
Query: 350 LSGLI---GSFVYSHRNVFGRNQKLNISLERG-----QIDSILRINYIDPWIEGDDKQTS 401
+ G+ + HRN+ G N+ L S+ Q D ++ Y P+++G D +
Sbjct: 461 TLASLQPGGTITFEHRNLQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVDNPRN 520
Query: 402 RTMMVQ--NSRTPGPL 415
RT+ V NSR P+
Sbjct: 521 RTLRVSCFNSRKLSPV 536
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 456 VFDMEQGLPVLPKWLFFNRVNAHARKGVDISHAR----------LRLNLSGGHVIGNFYP 505
+F ++QGL V + FFNR K + + L L+ G +G+
Sbjct: 643 MFQVDQGLGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPS 702
Query: 506 HEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM 542
++AF +GG SVRGY G +G+ R+ + + EI P+
Sbjct: 703 YDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPI 739
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum
sativum GN=OEP80 PE=1 SV=1
Length = 158
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 85/239 (35%), Gaps = 134/239 (56%)
Query: 242 RLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 301
+LQV+EAEVNNISIRFLDRK
Sbjct: 11 KLQVSEAEVNNISIRFLDRK---------------------------------------- 30
Query: 302 MGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSH 361
SI+PQPA + VDLI+ GLIGSF YSH
Sbjct: 31 -------SIVPQPA--QTAVDLIVR-------------------------GLIGSFAYSH 56
Query: 362 RNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQP 421
R LN+SLER TPG LVH NQ
Sbjct: 57 R--------LNLSLER---------------------------------TPGTLVHGNQD 75
Query: 422 DNSSQTIGRRAGSHDEKGNPIIKDFYSSP------------LYRKFVFDM--EQGLPVL 466
NS+ TIGR +G+ +I Y+SP L + ++ EQGLPVL
Sbjct: 76 GNSNLTIGRWSGTAG-----LIFQRYNSPLTASGNTHTETLLAKSATLELTDEQGLPVL 129
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3
PE=1 SV=1
Length = 818
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 107/238 (44%), Gaps = 30/238 (12%)
Query: 200 DGGKIINIRRLDEVITSINGWYMEHGL-------FGLVSGVEILSGGVIRLQVAEAEVNN 252
D GK+ + R L + + WY + G FG ++ E++ +V E ++
Sbjct: 316 DQGKV-SARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTKEVVC------EVVEGDITQ 368
Query: 253 ISIRFLDRKTGEPTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSI 310
+ I+F D K G +G T+ + R+L ++G V+++ GK+ + + ++G+ ++ +
Sbjct: 369 LVIQFQD-KLGNVVEGNTQVPVVRRELPKQLRQGYVFNIEAGKKALSNINSLGLFSNIEV 427
Query: 311 IPQPAGDTS---MVDLILNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFVYSHRNV 364
P+P +V++ L +E+ S S I G P GS + HRN+
Sbjct: 428 NPRPDEKNEGGIIVEIKLKELEQKSAEVSTEWSIVPGRGGAPTLASFQPGGSVTFEHRNL 487
Query: 365 FGRNQKLNISLERG-----QIDSILRINYIDPWIEGDDKQTSRTMMVQ--NSRTPGPL 415
G N+ L S+ Q D ++ Y+ P+++G +RT NSR P+
Sbjct: 488 QGLNRSLMGSVTTSNFLNPQDDLSFKLEYVHPYLDGVYNPRNRTFKTSCFNSRKLSPV 545
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 453 RKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHAR----------LRLNLSGGHVIGN 502
++ VF ++QGL + K+ FFNR K + + L L+ G +G+
Sbjct: 649 QRTVFQVDQGLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGD 708
Query: 503 FYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM 542
++AF +GG SVRGY G +G+ R+ EI P+
Sbjct: 709 LPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPV 748
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica
GN=TOC75 PE=2 SV=2
Length = 817
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 30/234 (12%)
Query: 205 INIRRLDEVITSINGWYMEHGL-------FGLVSGVEILSGGVIRLQVAEAEVNNISIRF 257
++ R L + + WY G FG ++ E++ +V E ++ + +F
Sbjct: 318 VSARLLQRIRDHVQKWYHNEGFVCAQVVNFGNLNTSEVVC------EVVEGDITKVEYQF 371
Query: 258 LDRKTGEPTKGKTRPETILRQL--TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA 315
D K G +G T+ I R+L + G ++++ GK+ ++ + ++ + ++ + P+P
Sbjct: 372 QD-KLGNFVEGNTQIPIIDRELPQQLRPGHIFNIGAGKQALKNINSLALFSNIEVNPRPD 430
Query: 316 GDTS---MVDLILNVVERPSGGFSAGGGISSGITSGPLSGLI---GSFVYSHRNVFGRNQ 369
+V++ L +E S S I G P I G+ + HRN++G N+
Sbjct: 431 ETKEGGIVVEIKLKELEPKSAEVSTEWSIVPGREGRPTLASIQPGGTVSFEHRNIYGLNR 490
Query: 370 KL-----NISLERGQIDSILRINYIDPWIEG-DDKQTSRTMMVQ--NSRTPGPL 415
+ + +L Q D ++ Y+ P+++G DD+ +RT N+R P+
Sbjct: 491 SIVGSVTSSNLLNPQDDLSFKLEYVHPYLDGVDDRNKNRTFKTSCFNTRKLSPV 544
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 454 KFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISH----------ARLRLNLSGGHVIGNF 503
+ +F ++QGL + K FFNR K V+++ A L L+ +G+
Sbjct: 649 RCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDL 708
Query: 504 YPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM 542
++AF +GG SVRGY G +G+ R+ + + E+ P+
Sbjct: 709 PSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPV 747
>sp|Q5IZC8|TC754_ARATH Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4
PE=2 SV=1
Length = 396
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 454 KFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHAR----------LRLNLSGGHVIGNF 503
K +F ++QGL + + FNR + + L L+ G IG+
Sbjct: 228 KNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDL 287
Query: 504 YPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM 542
++ FA+GG NSVRGY G +G+ ++ + EI P+
Sbjct: 288 PSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPV 326
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria
meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1
Length = 797
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 269 KTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP-AGDTSMVDLILNV 327
KTR E + R+L + Y + +R E V +G ++V P AG VDL +++
Sbjct: 359 KTRDEVVRRELRQMESAPYDTSKLQRSKERVELLGYFDNVQFDAVPLAGTPDKVDLNMSL 418
Query: 328 VERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRIN 387
ER +G +S+G +GL+ S S N+FG + + R + ++
Sbjct: 419 TERSTGSLD----LSAGWVQD--TGLVMSAGVSQDNLFGTGKSAALRASRSKTTLNGSLS 472
Query: 388 YIDPWIEGD 396
+ DP+ D
Sbjct: 473 FTDPYFTAD 481
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 239 GVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET 298
G+ L +A+ + +I + L R T P T+ L K G Y+ G +++
Sbjct: 14 GISPLALADFTIQDIRVEGLQR---------TEPSTVFNYLPVKVGDTYNDTHGSAIIKS 64
Query: 299 VLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGG 334
+ G +DV + +T+ L+L V+ERP+ G
Sbjct: 65 LYATGFFDDVRV------ETADGQLLLTVIERPTIG 94
>sp|C6V5K2|BAMA_NEORI Outer membrane protein assembly factor BamA OS=Neorickettsia
risticii (strain Illinois) GN=bamA PE=3 SV=1
Length = 738
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 260 RKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTS 319
RK +T+ I R++ + +Y + +L +G ++V I +
Sbjct: 335 RKINISGNTRTKDTVIRREMLLSENDLYQPSKVADSRRRILNLGFFDEVYIEEHKIDGQN 394
Query: 320 MVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQ 379
++ L + V ERP+G + GG S + G G+F + N+FG + +L + L++
Sbjct: 395 LI-LEVRVKERPTGTLNLSGGYGSDV------GFFGNFSFVENNLFGTSDRLVVELQKAS 447
Query: 380 IDS 382
+ S
Sbjct: 448 LGS 450
>sp|C4Y5P7|RTC1_CLAL4 Restriction of telomere capping protein 1 OS=Clavispora lusitaniae
(strain ATCC 42720) GN=RTC1 PE=3 SV=1
Length = 1158
Score = 39.7 bits (91), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 34 TESKNSLSHQIHSLRTRSDESTQSTELTQPESLTRKLQLFAERAYGNSARVCSMYPSTTG 93
T N+LS +IH+ R++ ST+ + T ++ + + A R Y N+A SM P
Sbjct: 767 TPKDNNLSDEIHAYEPRNNLSTKVSLSTMSSQKSKAIDIKAPRRYSNNAMSASMSPEIFA 826
Query: 94 AGETLVNLPLLCSAWMSLSQSTTSESAALPEVSSTQLQQKAQQQPHSVSRS 144
+ E+ PL A +S S+S T S ++P SS L + P SVS S
Sbjct: 827 SSES----PLKHIAKLSPSRSQTGHSWSIPS-SSHDLDD--ENMPASVSGS 870
>sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana
GN=GH3.6 PE=1 SV=1
Length = 612
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 120 AALPEVSSTQLQQKAQQQPH-----SVSRSDEERVLISEVLVRNKDGEELERKYLGTEAL 174
AAL EVS L +K + + + + D +R ++ E+L RN D E L+R G E
Sbjct: 8 AAL-EVSDESLAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRH--GLEGR 64
Query: 175 TVLKAC-HANSALTVREVQEDVNRIIDGGK--IINIRRLDEVITS 216
T + H +T ++Q ++NRI +G K ++ + E +TS
Sbjct: 65 TDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTS 109
>sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small subunit,
chloroplastic/amyloplastic OS=Oryza sativa subsp.
japonica GN=AGPS PE=2 SV=4
Length = 514
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 147 ERVLISEVLVRNKDGEELE--RKYLGTEA---LTVLKACHANSALTVREVQEDVNRIIDG 201
E +I + L+ D E E +K LG + + + K CH A+ + RI D
Sbjct: 420 EGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKNCHIRRAIIDKNA-----RIGDN 474
Query: 202 GKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVI 241
KIIN+ + E +G++++ G+ ++ + SG VI
Sbjct: 475 VKIINVDNVQEAARETDGYFIKSGIVTVIKDALLPSGTVI 514
>sp|O81829|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana
GN=GH3.5 PE=1 SV=1
Length = 612
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 124 EVSSTQLQQKAQQQPHSV----SRSDE-ERVLISEVLVRNKDGEELERKYL-GTEALTVL 177
EV L QK +Q+ + S +D+ +R ++ E+L RN D E L R L G
Sbjct: 11 EVFDLTLDQKNKQKLQLIEELTSNADQVQRQVLEEILTRNADVEYLRRHDLNGRTDRETF 70
Query: 178 KACHANSALTVREVQEDVNRIIDGGK--IINIRRLDEVITS 216
K + +T +++ ++NRI +G K I++ + + E +TS
Sbjct: 71 K--NIMPVITYEDIEPEINRIANGDKSPILSSKPISEFLTS 109
>sp|Q1B8U4|SSUB_MYCSS Aliphatic sulfonates import ATP-binding protein SsuB
OS=Mycobacterium sp. (strain MCS) GN=ssuB PE=3 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 115 TTSESAALPEVSSTQLQQKAQQQPHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEAL 174
T AAL EV L KA P S+S + +RV ++ LVR D L+ + +AL
Sbjct: 102 TARGRAALDEVG---LADKADAWPLSLSGGEAQRVSLARALVREPDLLLLDEPFGALDAL 158
Query: 175 TVLKA------CHANSALTVREVQEDVNRII 199
T LK A + V V DV+ I
Sbjct: 159 TRLKMYRLLHDLWARRHMAVLHVTHDVDEAI 189
>sp|A5FG67|MEND_FLAJ1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Flavobacterium johnsoniae (strain ATCC 17061
/ DSM 2064 / UW101) GN=menD PE=3 SV=1
Length = 554
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 507 EAFAIGGTNSVRGYEE----GAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRII 561
E F GT+ + G AVGSG+ V +G+I+F + D N ++ SY+ K +II
Sbjct: 406 EVFCNRGTSGIDGSTSTAVGAAVGSGKPNVFITGDISF--LYDSNALWNSYIPKNFKII 462
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,545,050
Number of Sequences: 539616
Number of extensions: 9373484
Number of successful extensions: 27021
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26962
Number of HSP's gapped (non-prelim): 78
length of query: 562
length of database: 191,569,459
effective HSP length: 123
effective length of query: 439
effective length of database: 125,196,691
effective search space: 54961347349
effective search space used: 54961347349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)