Query 008548
Match_columns 562
No_of_seqs 286 out of 2016
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 1.8E-49 3.8E-54 440.8 41.6 375 180-558 246-742 (796)
2 TIGR00992 3a0901s03IAP75 chlor 100.0 1.2E-46 2.5E-51 427.2 44.5 402 148-559 153-665 (718)
3 COG4775 Outer membrane protein 100.0 3E-42 6.5E-47 389.5 44.0 370 167-558 256-704 (766)
4 PRK11067 outer membrane protei 100.0 2.5E-38 5.5E-43 367.0 44.5 365 173-559 267-737 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 3.4E-38 7.3E-43 362.3 42.7 365 173-559 242-683 (741)
6 COG2831 FhaC Hemolysin activat 100.0 2.6E-33 5.7E-38 308.7 38.2 361 180-559 80-498 (554)
7 COG0729 Outer membrane protein 100.0 1.8E-30 3.8E-35 286.5 28.8 364 180-560 123-544 (594)
8 PF03865 ShlB: Haemolysin secr 99.9 5.1E-21 1.1E-25 205.3 26.0 276 276-559 8-346 (404)
9 PF01103 Bac_surface_Ag: Surfa 99.7 1.4E-16 3.1E-21 164.2 21.6 195 363-559 1-262 (323)
10 KOG2602 Predicted cell surface 99.7 3.3E-17 7.2E-22 169.9 16.6 290 247-558 35-394 (457)
11 COG4775 Outer membrane protein 99.5 2E-12 4.3E-17 147.6 18.6 182 150-335 71-346 (766)
12 PRK11067 outer membrane protei 99.4 4.6E-12 1E-16 147.7 20.3 172 150-333 71-266 (803)
13 TIGR03303 OM_YaeT outer membra 99.4 2.6E-11 5.6E-16 139.9 20.5 169 151-333 49-241 (741)
14 PF08479 POTRA_2: POTRA domain 98.9 1.1E-08 2.4E-13 83.9 9.0 72 174-248 3-76 (76)
15 PF07244 Surf_Ag_VNR: Surface 98.7 6.7E-08 1.4E-12 79.0 7.4 72 174-248 3-78 (78)
16 PF07244 Surf_Ag_VNR: Surface 98.6 2E-07 4.4E-12 76.1 8.2 73 248-330 1-78 (78)
17 PLN03138 Protein TOC75; Provis 98.5 8.6E-06 1.9E-10 92.7 19.2 144 183-337 162-349 (796)
18 TIGR00992 3a0901s03IAP75 chlor 98.3 1.1E-05 2.5E-10 92.8 16.3 151 150-337 109-271 (718)
19 PF08478 POTRA_1: POTRA domain 87.6 1.7 3.7E-05 34.1 5.9 67 249-329 2-68 (69)
20 PF08479 POTRA_2: POTRA domain 85.5 4.5 9.7E-05 32.7 7.4 69 249-329 2-75 (76)
21 PRK05529 cell division protein 83.9 6.4 0.00014 39.9 9.3 71 248-332 61-131 (255)
22 PF10437 Lip_prot_lig_C: Bacte 67.4 9.5 0.00021 31.6 4.5 61 236-306 13-75 (86)
23 PF08478 POTRA_1: POTRA domain 60.9 16 0.00036 28.4 4.5 66 174-247 3-68 (69)
24 COG1589 FtsQ Cell division sep 60.1 30 0.00064 35.3 7.4 70 249-332 61-130 (269)
25 PRK10775 cell division protein 47.6 64 0.0014 33.1 7.4 70 249-332 57-128 (276)
26 COG2831 FhaC Hemolysin activat 30.0 2.2E+02 0.0047 32.3 8.7 79 248-338 73-156 (554)
27 PRK05529 cell division protein 27.6 1.6E+02 0.0034 29.8 6.4 64 175-248 64-129 (255)
28 COG0729 Outer membrane protein 25.8 2.1E+02 0.0045 32.8 7.6 70 172-248 200-275 (594)
29 TIGR00545 lipoyltrans lipoyltr 25.6 2.3E+02 0.0051 29.7 7.5 110 186-305 193-317 (324)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=1.8e-49 Score=440.79 Aligned_cols=375 Identities=22% Similarity=0.371 Sum_probs=300.6
Q ss_pred eecCccCCHhHHHHHhhhhcCC-----------------------------CCcccHHHHHHHHHHHHHHHHHCCC-ceE
Q 008548 180 CHANSALTVREVQEDVNRIIDG-----------------------------GKIINIRRLDEVITSINGWYMEHGL-FGL 229 (562)
Q Consensus 180 ~~GN~~~~~~eL~~~l~~~~~~-----------------------------G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~ 229 (562)
|+||..++++||++.+.. ++ ...|+.++|++++++|+++|.++|| +++
T Consensus 246 ~~GN~~fs~~el~~~~~~--~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gklN~e~Lq~die~I~~~Y~d~GYafa~ 323 (796)
T PLN03138 246 IEMDEDMTDKEKMEYYRS--QEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKVSARLLQRIRDRVQKWYHDEGYACAQ 323 (796)
T ss_pred eeCCcccCHHHHHHHhhc--cccccccccccccccccchHHHHHHHhhhccCCcCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence 899999999999888876 22 2259999999999999999999999 899
Q ss_pred EEeEEEecCcEEEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhcc--ccCCCccchHHHHHHHHHHHhCCCcee
Q 008548 230 VSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMED 307 (562)
Q Consensus 230 V~~~~~~~dg~l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~--lk~G~~yn~~~le~~~~~L~~lG~F~~ 307 (562)
|.+....+++.|+++|.||+|..|+|.+++ +.|++++.+|++.+|+|+|+ ++||++||..++++++++|+++|+|++
T Consensus 324 V~~~~~id~g~Vtl~V~EG~i~~I~V~~~d-rig~~i~GNTrD~VIRREL~~~lkeGd~fN~~~l~~slqRL~~LGlFed 402 (796)
T PLN03138 324 VVNFGNLNTNEVVCEVVEGDITKVVIQFQD-KLGNVVEGNTQLPIIDRELPKQLRQGHIFNIEAGKQALRNINSLALFSN 402 (796)
T ss_pred EecccccCCceEEEEEecccEEEEEEEecc-cccccccCCccCeEEeeecccccCCCcccCHHHHHHHHHHHHhCCCCce
Confidence 998766667889999999999999998765 24666667889999999997 599999999999999999999999999
Q ss_pred eEEeeecC-CCCCeeEEEEEEEEcC--CceEEEeeeecCCCCCC---CccceEEEEEEEEecCCCCCcEEEEEEEE----
Q 008548 308 VSIIPQPA-GDTSMVDLILNVVERP--SGGFSAGGGISSGITSG---PLSGLIGSFVYSHRNVFGRNQKLNISLER---- 377 (562)
Q Consensus 308 V~i~~~~~-~~~g~vdl~i~V~E~~--~~~~~~g~g~ss~~~~~---~~~G~~~~~~l~~~NlfG~g~~ls~s~~~---- 377 (562)
|++.+.|+ ..++.++|.|+|+|.+ .+.++++.+|+.+.... ...++.++++|+++||+|+|++|.++++.
T Consensus 403 V~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~ 482 (796)
T PLN03138 403 IEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLL 482 (796)
T ss_pred eEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeeccc
Confidence 99999886 4679999999999944 45566666654321000 12567899999999999999999999988
Q ss_pred -cceeeEEEEEEEcCCcCC--CCcceEEEEEEEEeecCCCceeee---------------------ecC--cceEEEEEE
Q 008548 378 -GQIDSILRINYIDPWIEG--DDKQTSRTMMVQNSRTPGPLVHRN---------------------QPD--NSSQTIGRR 431 (562)
Q Consensus 378 -g~~~~~~~lsy~~P~~~~--~~~~~s~~~s~~~s~~~g~~~~~g---------------------~~~--~~~lslg~~ 431 (562)
++....++++|++||+.+ ++.++++++++|++++....+.++ .+. .+.++++..
T Consensus 483 ~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~ 562 (796)
T PLN03138 483 NPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVDRAGFKANITENFTRQSKFTYGLV 562 (796)
T ss_pred CCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEeecccceEeecccCCCCceEEEEE
Confidence 457789999999999987 566689999999987644322111 011 111233332
Q ss_pred E---eeecCCCCcee------------------------------------eccc----cCCeeEEEEEEEeccccCCCC
Q 008548 432 A---GSHDEKGNPII------------------------------------KDFY----SSPLYRKFVFDMEQGLPVLPK 468 (562)
Q Consensus 432 ~---~~~d~~g~~~~------------------------------------~d~~----~~~l~~~~~~~~e~Gl~~~~~ 468 (562)
+ ..+|+.|+... +|.. ++..+..+.+++||+++++.+
T Consensus 563 ~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~~~~pt~G~~~~~~~EQ~lpvg~~ 642 (796)
T PLN03138 563 VEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAVVGDRHIFQVDQGLGIGSK 642 (796)
T ss_pred EEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCCCCCCCccceEEEEeeeeccccCC
Confidence 2 23444433211 0111 122334667888999999888
Q ss_pred ccceEEEEEEEEEEEEc----------cCceEEEEeeeeeeccCCCccCceecCCCCcccCccCCCccccceEEEEEEEE
Q 008548 469 WLFFNRVNAHARKGVDI----------SHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEI 538 (562)
Q Consensus 469 ~~~f~k~~~~~~~~~~l----------~~~~l~lr~~~G~i~g~lP~~E~F~lGG~~SVRGY~~~~igpG~~~~~~s~E~ 538 (562)
+..|+|+.+++++|+|+ .+.+|++++++|++.|+||++|+|.+||.+|||||.++++|.|++++++++||
T Consensus 643 ~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEy 722 (796)
T PLN03138 643 FPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAEL 722 (796)
T ss_pred CCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCCcHHhcccCCCCcccCcccCcccccceeEEEEEEE
Confidence 99999999999999998 14789999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCc-eEEEeccccce
Q 008548 539 TFPMVCDDN-PIFLSYLDKKL 558 (562)
Q Consensus 539 r~pl~~~~~-~~F~D~G~v~~ 558 (562)
|+||. .+. ++|+|+|+.|-
T Consensus 723 RfPi~-~~~g~~F~D~GsdLg 742 (796)
T PLN03138 723 RIPVR-NTHVYAFAEHGTDLG 742 (796)
T ss_pred Eeeec-cceEEEEEEeccccC
Confidence 99994 467 99999999873
No 2
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=1.2e-46 Score=427.24 Aligned_cols=402 Identities=23% Similarity=0.359 Sum_probs=315.7
Q ss_pred ceEEEEEEEEec---CCCeeeeeeehhhhhcc-cceee--------cCccCCHhHHHHHhhhhcCCC-CcccHHHHHHHH
Q 008548 148 RVLISEVLVRNK---DGEELERKYLGTEALTV-LKACH--------ANSALTVREVQEDVNRIIDGG-KIINIRRLDEVI 214 (562)
Q Consensus 148 ~vli~~V~v~g~---~g~~l~~~~~e~~~i~~-I~~~~--------GN~~~~~~eL~~~l~~~~~~G-~~f~~~~l~~~~ 214 (562)
.=.|++|.+.-. +|-.++..|.|+|++.. | .|+ ||..++.++|++++.. +.| ++|+...|++++
T Consensus 153 tG~F~~V~~~~~~~~~Gv~v~~~V~enP~~~~~v-~~~g~~~~~~~~~~~lp~~~l~e~~~~--~~G~~~ln~~~L~~~~ 229 (718)
T TIGR00992 153 RFRCINVGLMPQSKPLEMDVDMEVKEKPEFTRRL-EIRYKRRIAEARPCLLPQEVVDETFGM--LYGQGIVSARLLQEIR 229 (718)
T ss_pred cEEeeeeEEeeccCCCceEEEEEEecCCEEEEEE-EEeecccccccccccCCHHHHHHHhcc--ccCCeecCHHHHHHHH
Confidence 346788887644 45557788999999999 9 485 5677899999999997 899 999999999999
Q ss_pred HHHHHHHHHCCC-ceEEEeEEEecCcEEEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhcc--ccCCCccchHH
Q 008548 215 TSINGWYMEHGL-FGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQ 291 (562)
Q Consensus 215 ~~L~~~Y~~~GY-~a~V~~~~~~~dg~l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~--lk~G~~yn~~~ 291 (562)
++|+++|+++|| +|+|.......+++|+|+|.||+|.+|.|...+ +.||++..++++.+|+++++ +++|++||.++
T Consensus 230 ~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V~EG~i~~I~V~~i~-~~Gn~~~G~T~~~vI~Rel~~~lk~G~~fn~~~ 308 (718)
T TIGR00992 230 DRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFD-KLGNVVEGNTRDPVVTRELPKQLKPGDVFNIEA 308 (718)
T ss_pred HHHHHHHHHCCceeEEEeccCcCCCCEEEEEEeccceeEEEEEEec-ccCccccCccchHHHHHHHHhccCCCCcCCHHH
Confidence 999999999999 899986533333489999999999999885322 13665556889999999999 99999999999
Q ss_pred HHHHHHHHHhCCCceeeEEeeecCC-CCCeeEEEEEEEEcCCc--------eEEEeee---ecCCCCCCCccceEEEEEE
Q 008548 292 GKRDVETVLTMGIMEDVSIIPQPAG-DTSMVDLILNVVERPSG--------GFSAGGG---ISSGITSGPLSGLIGSFVY 359 (562)
Q Consensus 292 le~~~~~L~~lG~F~~V~i~~~~~~-~~g~vdl~i~V~E~~~~--------~~~~g~g---~ss~~~~~~~~G~~~~~~l 359 (562)
|++++++|+++|+|++|++.+.|.. +++.++|.|.|+|++++ ++.+|+| |++. .|+++.++|
T Consensus 309 Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G~Gg~~~ss~------~G~~g~i~~ 382 (718)
T TIGR00992 309 GKTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLAS------SQPGGTITF 382 (718)
T ss_pred HHHHHHHHHcCCCcccceeeccCCCCCCCeEEEEEEEEECCCCceeeeccccccccCCCcccccc------cceeEEeeE
Confidence 9999999999999999999998875 78999999999999998 5566666 6654 789999999
Q ss_pred EEecCCCCCcEEEEEEEEc-----ceeeEEEEEEEcCCcCCC--CcceEEEEEEEEeecCCC-----------c-----e
Q 008548 360 SHRNVFGRNQKLNISLERG-----QIDSILRINYIDPWIEGD--DKQTSRTMMVQNSRTPGP-----------L-----V 416 (562)
Q Consensus 360 ~~~NlfG~g~~ls~s~~~g-----~~~~~~~lsy~~P~~~~~--~~~~s~~~s~~~s~~~g~-----------~-----~ 416 (562)
+++|+||.|++|+++++.+ +..+.+.++|++||+.++ +.++++++++|+++.... . .
T Consensus 383 ~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~r 462 (718)
T TIGR00992 383 EHRNLQGLNRSLGGSVTTSNFLNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVDR 462 (718)
T ss_pred EeccCcccCcEEEEEEEeccccCCCcceEEEEEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEEE
Confidence 9999999999999999998 778999999999999876 667889999887654211 0 0
Q ss_pred ee-----eecC--c------ceEEEEEEEe---eecCCCCc------------------------------eeecc----
Q 008548 417 HR-----NQPD--N------SSQTIGRRAG---SHDEKGNP------------------------------IIKDF---- 446 (562)
Q Consensus 417 ~~-----g~~~--~------~~lslg~~~~---~~d~~g~~------------------------------~~~d~---- 446 (562)
.+ +.+. . +.++....++ +.+..|.. +..|.
T Consensus 463 ~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t~D~rDn~ 542 (718)
T TIGR00992 463 AGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPISADGPPTTLSGTGVDRMAFLQANITRDNTNFV 542 (718)
T ss_pred EEEEEEEeeccCcccccccCeEEEEEeeeeeeeeccccCccccccccccccCCcceecCCCccceEEEEEEEEEecCCCC
Confidence 11 1111 1 1111111111 11211110 00111
Q ss_pred ccCCeeEEEEEEEeccccCCCCccceEEEEEEEEEEEEcc----------CceEEEEeeeeeeccCCCccCceecCCCCc
Q 008548 447 YSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDIS----------HARLRLNLSGGHVIGNFYPHEAFAIGGTNS 516 (562)
Q Consensus 447 ~~~~l~~~~~~~~e~Gl~~~~~~~~f~k~~~~~~~~~~l~----------~~~l~lr~~~G~i~g~lP~~E~F~lGG~~S 516 (562)
..+.-+..+.++++++.+++.+...|.|+.+++++|+|+. +++|++|+++|++.+++|++|+|++||.+|
T Consensus 543 l~Pt~G~~~~~~~e~~~~~g~~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~~G~~~gdlP~~e~F~lGG~~S 622 (718)
T TIGR00992 543 NGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAFILGGPYS 622 (718)
T ss_pred CCCCcccEEEEEEEeccCcCCCCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEEeeeEcCCCCchhceecCCCCc
Confidence 1122233455556666665544457999999999999984 378999999999999999999999999999
Q ss_pred ccCccCCCccccceEEEEEEEEEEecCCCCceEEEecccccee
Q 008548 517 VRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLR 559 (562)
Q Consensus 517 VRGY~~~~igpG~~~~~~s~E~r~pl~~~~~~~F~D~G~v~~~ 559 (562)
||||.++++|||++++++++|||||+...+.++|+|+|++|..
T Consensus 623 VRGY~~~~lGpGr~~~~~s~E~r~Pi~~~~g~~F~D~G~~~~s 665 (718)
T TIGR00992 623 VRGYNMGELGAARNIFEATAEIRIPIKATHVYAFVEHGSDLGS 665 (718)
T ss_pred ccCccCCcccccceeeEEEEEEEEEecCccEEEEEecccccCc
Confidence 9999999999999999999999999975434999999999854
No 3
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-42 Score=389.54 Aligned_cols=370 Identities=24% Similarity=0.316 Sum_probs=297.9
Q ss_pred eeehhh--hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEEEe--cCcE-
Q 008548 167 KYLGTE--ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGVEIL--SGGV- 240 (562)
Q Consensus 167 ~~~e~~--~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~~~--~dg~- 240 (562)
.+.|-+ .+..| .++||.....++|++++.. ++|++|+.++++++.++|+++|.+.|| +++|.+.... ++++
T Consensus 256 ~V~EG~~y~~~~i-~i~g~~~~~~~el~~~~~~--~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~~~~n~~~~tv 332 (766)
T COG4775 256 TVKEGPQYKFGSV-LIEGNLAGVSEELEKLLKV--KPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQPDANDENKTV 332 (766)
T ss_pred EEccCCceEEEEE-EEEcCccCcHHHHHHhhcc--CCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeeecccCCCCcEE
Confidence 344444 56778 4999999999999999975 999999999999999999999999999 9999765442 2344
Q ss_pred -EEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCC
Q 008548 241 -IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAG 316 (562)
Q Consensus 241 -l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~ 316 (562)
|.++|.++ +|++|.|.| | .+|++.+|+|+++++||++||..++++++++|.++|||++|++...|.+
T Consensus 333 ~v~~~V~~g~~~~V~~i~i~g------n---~rT~D~VIrRE~~~~eGd~fn~~~v~~~~~rL~~lgyF~~V~i~~~~~~ 403 (766)
T COG4775 333 DVVFRVDEGDRVYVRRIRIRG------N---TRTKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFESVNIDTAPGS 403 (766)
T ss_pred EEEEEEEcCCceeeeeeeecC------C---CccccHHhhhhhhcCCcchhhHHHHHHHHHHHHhcCCceeeEEEeccCC
Confidence 77788765 899999995 4 6999999999999999999999999999999999999999999999987
Q ss_pred CCCeeEEEEEEEEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcceeeEEEEEEEcCCcCCC
Q 008548 317 DTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGD 396 (562)
Q Consensus 317 ~~g~vdl~i~V~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~~~~~~~lsy~~P~~~~~ 396 (562)
.++.|||.++|+|++++++.+|+||++. .|+.+.++|+.+|+||.|+.+++.+..++..+.++++|++||+..+
T Consensus 404 ~~~~vdvvv~VkE~~Tgsi~~G~Gy~s~------~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l~ft~P~f~~~ 477 (766)
T COG4775 404 GSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSLSFTDPYFLDD 477 (766)
T ss_pred CCCeEEEEEEEEecCceeEEecccccCC------CceEEEEEEEEeecCccccEEEEEEEeccceEEEEEEEecccccCC
Confidence 7779999999999999999999999987 8899999999999999999999999999999999999999998765
Q ss_pred CcceEEEEEEEEeec-----CCC-----------ceeeeecCc--ceEEEEEEEeeec---CCC------Ccee-ec---
Q 008548 397 DKQTSRTMMVQNSRT-----PGP-----------LVHRNQPDN--SSQTIGRRAGSHD---EKG------NPII-KD--- 445 (562)
Q Consensus 397 ~~~~s~~~s~~~s~~-----~g~-----------~~~~g~~~~--~~lslg~~~~~~d---~~g------~~~~-~d--- 445 (562)
++++++++|+.+. ... ....+++.+ .++.++|.+.... ... ..+. ..
T Consensus 478 --~~slg~~~f~~~~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (766)
T COG4775 478 --RVSLGFNLFSNRYDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGG 555 (766)
T ss_pred --CceeEEEeEeeeecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccC
Confidence 4688888776544 111 111133433 3344444332211 110 0000 00
Q ss_pred -cccCCeeEEEEEEE-----------------eccccCCCCccceEEEEEEEEEEEEccC--ceEEEEeeeeeecc----
Q 008548 446 -FYSSPLYRKFVFDM-----------------EQGLPVLPKWLFFNRVNAHARKGVDISH--ARLRLNLSGGHVIG---- 501 (562)
Q Consensus 446 -~~~~~l~~~~~~~~-----------------e~Gl~~~~~~~~f~k~~~~~~~~~~l~~--~~l~lr~~~G~i~g---- 501 (562)
.....++..++||. +.+. +| ++..|+|+.+++++|+++.+ +++.++..+|+..+
T Consensus 556 ~~~~~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e~~~-~G-gd~~~~K~~~~~~~Y~~l~~~~~~l~~~~~~g~~~~~g~~ 633 (766)
T COG4775 556 KSDLSSLSLGWTYDTRDNALFPTKGSYLSLTQEVAG-LG-GDIKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYGTK 633 (766)
T ss_pred cceeEEEEEeEEEcCCCCcCCCCCCeEEeeeeEEec-cC-CcceEEEEEEEEEEEEEcccccEEEEEEEEEEEeeccCCc
Confidence 11233444445542 1111 23 79999999999999999984 37888888888763
Q ss_pred CCCccCceecCCCCcccCccCCCccc---------cceEEEEEEEEEEecCC--C--Cc-eEEEeccccce
Q 008548 502 NFYPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEITFPMVC--D--DN-PIFLSYLDKKL 558 (562)
Q Consensus 502 ~lP~~E~F~lGG~~SVRGY~~~~igp---------G~~~~~~s~E~r~pl~~--~--~~-~~F~D~G~v~~ 558 (562)
.+|.+|+|++||.+|||||+++.+|| |+.++.+|+|||||++. . +. ++|+|+|.+|+
T Consensus 634 ~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~~~r~~lF~D~G~v~~ 704 (766)
T COG4775 634 LLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIGSGVRGALFFDAGSVWN 704 (766)
T ss_pred ccccccceeeCCCccccceecCCcCCccccccccCceEEEEEEEEEEeecCCCCCcceEEEEEEEcccccc
Confidence 48999999999999999999999999 99999999999999985 2 55 99999999997
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=2.5e-38 Score=366.98 Aligned_cols=365 Identities=18% Similarity=0.193 Sum_probs=280.3
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEE-Ee-cCcE--EEEEEEE
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGVE-IL-SGGV--IRLQVAE 247 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~-~~-~dg~--l~i~I~E 247 (562)
.++.| .|.||..+++++|++.+.. ++|++|+...+++++++|+++|+++|| +++|.+.. +. +++. |++.|+|
T Consensus 267 ~i~~i-~~~G~~~~~~~~l~~~~~~--k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~~~~~~v~i~~~v~e 343 (803)
T PRK11067 267 KLSGV-QVSGNLAGHSAEIEKLTKI--EPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLHVNVDA 343 (803)
T ss_pred EEEEE-EEEecCCCCHHHHHHhhcC--CCCceeCHHHHHHHHHHHHHHHHhCCCCcceeeeccccCCCCCEEEEEEEEee
Confidence 56778 5999999999999999986 999999999999999999999999999 89986432 22 3444 7788887
Q ss_pred E---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecC-CCCCeeEE
Q 008548 248 A---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTSMVDL 323 (562)
Q Consensus 248 g---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~-~~~g~vdl 323 (562)
| +|++|.|.| + .++++++|++++.+++|++|+..+|++++++|+++|+|+.|++.+.+. ..++.++|
T Consensus 344 G~~y~ig~I~i~G------n---~~~~~~~l~r~l~~~~G~~~~~~~l~~~~~~L~~~g~F~~V~~~~~~~~~~~~~v~l 414 (803)
T PRK11067 344 GNRFYVRKIRFEG------N---DTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDV 414 (803)
T ss_pred CCeEEEEEEEEEC------C---ccccchhhhhheeccccccCCHHHHHHHHHHHHhcCCcccCccccccCCCCCCeEEE
Confidence 6 799999995 4 478899999999999999999999999999999999999999888654 34579999
Q ss_pred EEEEEEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcceeeEEEEEEEcCCcCCCCcceEEE
Q 008548 324 ILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRT 403 (562)
Q Consensus 324 ~i~V~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~~~~~~~lsy~~P~~~~~~~~~s~~ 403 (562)
++.|+|++++.+++|+||++. .|+++.++|+++|+||.|++++++++.+...+.+.++|+.||+..+++ +++
T Consensus 415 ~v~v~e~~~~~~~~g~gy~s~------~g~~~~~~~~~~N~~G~G~~l~l~~~~s~~~~~~~l~~~~P~~~~~~~--~~~ 486 (803)
T PRK11067 415 VYKVKERNTGSFNFGVGYGTE------SGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGV--SLG 486 (803)
T ss_pred EEEEEEccCCcEEEEeeecCc------CCEEEEEEEEecccCCcCcEEEEEEEeccceEEEEEEEeCCcCcCCCc--eEE
Confidence 999999999999999999986 789999999999999999999999999988889999999999876554 555
Q ss_pred EEEEEeecC--------------CCceeeeec--CcceEEEEEEEeee---cCCCCc----eee------------c--c
Q 008548 404 MMVQNSRTP--------------GPLVHRNQP--DNSSQTIGRRAGSH---DEKGNP----IIK------------D--F 446 (562)
Q Consensus 404 ~s~~~s~~~--------------g~~~~~g~~--~~~~lslg~~~~~~---d~~g~~----~~~------------d--~ 446 (562)
++++.+... +.....+++ ..+.+++++.+... +..... .+. . .
T Consensus 487 ~~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (803)
T PRK11067 487 GRIFYNDFEADDADLSDYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGENPSSDSDNSFKT 566 (803)
T ss_pred EEEEEEeccccccccccceeeEEEEEEEEEEEecCceEEEEEEEEEEEEeecCCcchhHHHHHHHcCCccccccccccce
Confidence 544432211 011111223 22344444433221 100000 000 0 0
Q ss_pred ccCCeeEEEEEEE-----------------eccccCCCCccceEEEEEEEEEEEEcc-C--ceEEEEeeeeeecc----C
Q 008548 447 YSSPLYRKFVFDM-----------------EQGLPVLPKWLFFNRVNAHARKGVDIS-H--ARLRLNLSGGHVIG----N 502 (562)
Q Consensus 447 ~~~~l~~~~~~~~-----------------e~Gl~~~~~~~~f~k~~~~~~~~~~l~-~--~~l~lr~~~G~i~g----~ 502 (562)
....+++++.++. +.+. ..++..|.|+.+++++|++++ + +++.+|+++|++.+ +
T Consensus 567 ~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~~~~~~--~gs~~~f~k~~~~~~~y~~l~~~~~~~l~~r~~~G~~~~~~~~~ 644 (803)
T PRK11067 567 DDFTFNYGWTYNNLDRGYFPTAGNRVNLTGKVTI--PGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKE 644 (803)
T ss_pred EEEEEEEEEEEecCcCCCCCCCCeeEEEEEEEEe--ecccceEEEEEEEEEEEEEecCCCcEEEEEEEEeeeeecCCCCC
Confidence 0011222233331 1111 125789999999999999998 3 56778888887653 5
Q ss_pred CCccCceecCCCCcccCccCCCccc----------------------------cceEEEEEEEEEEecC-------CCCc
Q 008548 503 FYPHEAFAIGGTNSVRGYEEGAVGS----------------------------GRSYVVGSGEITFPMV-------CDDN 547 (562)
Q Consensus 503 lP~~E~F~lGG~~SVRGY~~~~igp----------------------------G~~~~~~s~E~r~pl~-------~~~~ 547 (562)
+|++|+|++||.+|||||.+++||| |+.++.+|+|||||++ ..|.
T Consensus 645 lP~~erF~lGG~~svRGy~~~siGp~~~~~~~~~~~~~~~~~~~~~~~~~~iGG~~~~~~s~E~~~p~~~~~~~~~~~~~ 724 (803)
T PRK11067 645 MPFYENFYAGGSSTVRGFQSNTIGPKAVYYPGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVR 724 (803)
T ss_pred CChhheeccCCCCcCCcccCCCcCCccccccccccccccccccccCCCCCCCCCeEEEEEeEEEEEeCCccccccCCCEE
Confidence 9999999999999999999888776 7799999999999963 2467
Q ss_pred -eEEEecccccee
Q 008548 548 -PIFLSYLDKKLR 559 (562)
Q Consensus 548 -~~F~D~G~v~~~ 559 (562)
++|+|+|+||+.
T Consensus 725 ~~~F~D~G~~~~~ 737 (803)
T PRK11067 725 TSFFWDMGTVWDT 737 (803)
T ss_pred EEEEEEeeecccC
Confidence 999999999964
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=3.4e-38 Score=362.31 Aligned_cols=365 Identities=23% Similarity=0.319 Sum_probs=287.1
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEEE-ec-CcE--EEEEEEE
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGVEI-LS-GGV--IRLQVAE 247 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~~-~~-dg~--l~i~I~E 247 (562)
.+..| .|.||..+++++|++.+.. ++|++|+.+.+++++++|.++|+++|| +++|.+... .. ++. |++.|.|
T Consensus 242 ~i~~i-~i~g~~~~~~~~l~~~~~~--~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~~~v~~~~~~~~~~~~v~v~~~v~e 318 (741)
T TIGR03303 242 KFGEV-TIEGDLIGPDEELKKLLKI--KKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVDP 318 (741)
T ss_pred EEEeE-EEEeccCCcHHHHHHhhcC--CCCCeeCHHHHHHHHHHHHHHHHhcCCceeEEEecceECCCCCEEEEEEEEcc
Confidence 46778 5999999999999999996 999999999999999999999999999 899976433 23 333 8888888
Q ss_pred E---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEE
Q 008548 248 A---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLI 324 (562)
Q Consensus 248 g---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~ 324 (562)
+ +|++|.|.| + ..+++++|++++++++|++|+.+++++++++|+++|+|+.|.+.+.+...++.++|.
T Consensus 319 g~~~~i~~i~i~g------~---~~t~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~lg~f~~v~~~~~~~~~~~~~~v~ 389 (741)
T TIGR03303 319 GKRVYVRRINISG------N---TRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPVGSPDQVDLN 389 (741)
T ss_pred CCeEEEEEEEEEC------C---CccccceeehhhccCcccccCHHHHHHHHHHHHhCCCCceeeeeecCCCCCCEEEEE
Confidence 6 699999995 4 578899999999999999999999999999999999999999998887778999999
Q ss_pred EEEEEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcceeeEEEEEEEcCCcCCCCcceEEEE
Q 008548 325 LNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTM 404 (562)
Q Consensus 325 i~V~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~~~~~~~lsy~~P~~~~~~~~~s~~~ 404 (562)
+.|+|++++.+.++++|++. .++++.++++++|+||.|+++++.+..+...+.+.++|+.||+.+.++ .+++
T Consensus 390 i~v~e~~~~~~~~~~g~~~~------~~~~~~~~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~ 461 (741)
T TIGR03303 390 VKVKEQPTGSISFGVGYGSS------SGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGV--SLGF 461 (741)
T ss_pred EEEEEccccEEEEeeeecCC------CceEEEEEEEEecccccccEEEEEEEeccceEEEEEEEECCCCcCCCe--EEEE
Confidence 99999999999999999875 789999999999999999999999999988888999999999877554 5555
Q ss_pred EEEEeecC-------CCc-------eeeeec--CcceEEEEEEEeee---cCCCCc-----ee----eccccCCeeEEEE
Q 008548 405 MVQNSRTP-------GPL-------VHRNQP--DNSSQTIGRRAGSH---DEKGNP-----II----KDFYSSPLYRKFV 456 (562)
Q Consensus 405 s~~~s~~~-------g~~-------~~~g~~--~~~~lslg~~~~~~---d~~g~~-----~~----~d~~~~~l~~~~~ 456 (562)
+++.++.. ... ...+++ ..+.+++++.+.+. +..+.. .+ ..+....++..+.
T Consensus 462 ~~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (741)
T TIGR03303 462 SIFYSETDRNYKNFSDYKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKNSSDSDSSASYFIKEQGGKFIDSSLSYGWS 541 (741)
T ss_pred EEEEEEcccccccccCceeEEEEEEEEEEEEecCceEEEEEEEEEEEEEecCCCcchhHHHHHHHhCCceEEEEEEEEEE
Confidence 55443321 000 111222 23344444433221 111100 00 0011112222333
Q ss_pred EEE-----------------eccccCCCCccceEEEEEEEEEEEEccC---ceEEEEeeeeeecc----CCCccCceecC
Q 008548 457 FDM-----------------EQGLPVLPKWLFFNRVNAHARKGVDISH---ARLRLNLSGGHVIG----NFYPHEAFAIG 512 (562)
Q Consensus 457 ~~~-----------------e~Gl~~~~~~~~f~k~~~~~~~~~~l~~---~~l~lr~~~G~i~g----~lP~~E~F~lG 512 (562)
++. +.+. . .++.+|.|+.+++++|+++++ ++|++++.+|++.+ ++|.+|+|++|
T Consensus 542 ~d~rD~~~~P~~G~~~~~~~~~~~-~-g~~~~f~k~~~~~~~y~~l~~~~~~~l~~~~~~g~~~~~~~~~~p~~e~f~lG 619 (741)
T TIGR03303 542 YDTLDSGYFPTKGSIQRLSQEFAG-P-GGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAG 619 (741)
T ss_pred EeCCcCCCCCCCCcEEEEEEEEee-e-cCCceEEEEEEEEEEEEEcCCCCcEEEEEEEEeeEEEcCCCCccChhHeEecC
Confidence 332 1111 1 257899999999999999985 89999999999763 69999999999
Q ss_pred CCCcccCccCCCccc-----------cceEEEEEEEEEEecC-----CCCc-eEEEecccccee
Q 008548 513 GTNSVRGYEEGAVGS-----------GRSYVVGSGEITFPMV-----CDDN-PIFLSYLDKKLR 559 (562)
Q Consensus 513 G~~SVRGY~~~~igp-----------G~~~~~~s~E~r~pl~-----~~~~-~~F~D~G~v~~~ 559 (562)
|.++||||.++++|| |+.++.+++|||+|++ ..+. ++|+|+|++|..
T Consensus 620 G~~svRGy~~~~igp~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~~~~~~~~~F~D~G~v~~~ 683 (741)
T TIGR03303 620 GIGSVRGFESNGIGPRDINDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWGT 683 (741)
T ss_pred CCCcCCCccCCCcCCCccCCCCCCCCceEEEEEEEEEEEcCCCCCccCcEEEEEEEEeeecccC
Confidence 999999999999986 9999999999999995 2366 999999999964
No 6
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.6e-33 Score=308.75 Aligned_cols=361 Identities=17% Similarity=0.178 Sum_probs=268.5
Q ss_pred eecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeE-EEecCcEEEEEEEEEEEeeEEEEe
Q 008548 180 CHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGV-EILSGGVIRLQVAEAEVNNISIRF 257 (562)
Q Consensus 180 ~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~-~~~~dg~l~i~I~Eg~I~~I~i~G 257 (562)
++||..+...+|++.+.. ..|+|++.++|+..+.+|+++|.++|| +++|... |.+.+|+|.|+|.||+|++|+|.|
T Consensus 80 l~g~~~~~~~~l~~~~~~--~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~i~g 157 (554)
T COG2831 80 LEGNTLLDALELQAILAP--YLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIRITG 157 (554)
T ss_pred EeCCcccChHHHHHhhHH--hhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEEEcC
Confidence 444455677788888887 899999999999999999999999999 8888754 668999999999999999999995
Q ss_pred cccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEEEEcCCceEEE
Q 008548 258 LDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSA 337 (562)
Q Consensus 258 ~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~~~ 337 (562)
. ....+..++..++..+|+++|..+||++++.|+++.-.+ +.+++.|+.++|+.+|.|+++++++. ++
T Consensus 158 ~---------~~~~~~~~~~~~p~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~~G~S~l~i~~~~~~~~--~~ 225 (554)
T COG2831 158 D---------SDLRSVALRSLFPAHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSEPGESDLVIKVQQGKPW--RV 225 (554)
T ss_pred C---------CccchhhHHhhccccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCCCCccEEEEEeeeCCCe--EE
Confidence 3 344558889999999999999999999999999998865 88899999999999999999997774 45
Q ss_pred eeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcce---eeEEEEEEEcCCcCCCCcceEEEEEE--EEeecC
Q 008548 338 GGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQI---DSILRINYIDPWIEGDDKQTSRTMMV--QNSRTP 412 (562)
Q Consensus 338 g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~~---~~~~~lsy~~P~~~~~~~~~s~~~s~--~~s~~~ 412 (562)
.+++++.++. .+..+++++++.++|++|.||.+++++..+.+ ...++++|+.|+..+ . ++++.+. ++....
T Consensus 226 ~~~~DN~G~~-~tG~~r~~~~l~~dn~lglgD~l~~~~~~~~~~~~~~~~~~~Ys~P~g~~-~--~~~~~s~~~y~~~~~ 301 (554)
T COG2831 226 SASADNYGSK-STGRYRLGVGLSLDNPLGLGDQLSLSYSRSLDGQTTNNYSLSYSVPLGYW-T--FSLGASYSEYRQVLE 301 (554)
T ss_pred EEEecCCCCc-CccceeeEeEEEecCCCcchhheeehhcccCCCcccceEEEEEEEEEccc-e--eEEEeeeeeeEeecc
Confidence 5555544331 23558999999999999999999999998533 258999999998754 2 3444433 222111
Q ss_pred CC-c-e-eeeec--------------CcceEEEEEEEeeecCC---CCcee--ecccc--CCee-----------EEEEE
Q 008548 413 GP-L-V-HRNQP--------------DNSSQTIGRRAGSHDEK---GNPII--KDFYS--SPLY-----------RKFVF 457 (562)
Q Consensus 413 g~-~-~-~~g~~--------------~~~~lslg~~~~~~d~~---g~~~~--~d~~~--~~l~-----------~~~~~ 457 (562)
+. . . ..|.+ ...+++++..+..++.. ....+ .+... ..++ ..+.+
T Consensus 302 ~~~~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~~q~r~~~~~~~gl~~~~~~~~~~~~~~l 381 (554)
T COG2831 302 GPFDVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIEVQRRRLTAVELGLSGRRYLGGGTLDASL 381 (554)
T ss_pred cCCceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhccccccccccccccEEecceEEEEeccceecccc
Confidence 11 0 0 11111 22233333322222110 00000 00000 0111 01111
Q ss_pred EEeccccC-----------CCCccceEEEEEEEEEEEEccC--ceEEEEeeeeeeccCCCccCceecCCCCcccCccCCC
Q 008548 458 DMEQGLPV-----------LPKWLFFNRVNAHARKGVDISH--ARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGA 524 (562)
Q Consensus 458 ~~e~Gl~~-----------~~~~~~f~k~~~~~~~~~~l~~--~~l~lr~~~G~i~g~lP~~E~F~lGG~~SVRGY~~~~ 524 (562)
....|+.+ +..+..|.++.+++.+.++++. +.+..++.+|+..+.|++.|+|.+||..+||||+.+.
T Consensus 382 ~~~~G~~~lGa~~~~~~~~~~~~~~f~~~~~~~~~~~~f~~~~~~~~~~~~~Q~s~~~L~s~e~fsiGg~~sVRGf~~~~ 461 (554)
T COG2831 382 GYRRGLGALGASKDDEETNGEPTSRFKKLNGNASLLQPFGLGPFLYATQFNAQYSGDPLLSSEKFSIGGRYSVRGFDGGS 461 (554)
T ss_pred hhhhCchhhcCCCCchhhcCCCCcceEEEEEeeEEEeecccccEEEEEEEEEEEcCCCCCcHHHeecCCCceecccCCCC
Confidence 12223221 1135889999999999999984 7888889999998899999999999999999999999
Q ss_pred ccccceEEEEEEEEEEecCCC--Cc-eEEEecccccee
Q 008548 525 VGSGRSYVVGSGEITFPMVCD--DN-PIFLSYLDKKLR 559 (562)
Q Consensus 525 igpG~~~~~~s~E~r~pl~~~--~~-~~F~D~G~v~~~ 559 (562)
+. ||.+|.++.|+|+++... ++ ++|+|+|.+|..
T Consensus 462 ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~~~ 498 (554)
T COG2831 462 LS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVYNN 498 (554)
T ss_pred cc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEecc
Confidence 98 999999999999999886 77 999999999976
No 7
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.8e-30 Score=286.49 Aligned_cols=364 Identities=17% Similarity=0.157 Sum_probs=267.0
Q ss_pred eecCccCCHhHHHHHhh-hhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEE--Ee-cCcE--EEEEEE---EEE
Q 008548 180 CHANSALTVREVQEDVN-RIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGVE--IL-SGGV--IRLQVA---EAE 249 (562)
Q Consensus 180 ~~GN~~~~~~eL~~~l~-~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~--~~-~dg~--l~i~I~---Eg~ 249 (562)
+.| .++++.+++.... ...+.|.++++..+++.+..+.+...++|| .+++...+ +. ..++ +++.++ ++.
T Consensus 123 ~~G-~a~~d~~~~~~~~~~~~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~ 201 (594)
T COG0729 123 LPG-PAFTDGDYRLLGDAAGPKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYR 201 (594)
T ss_pred ccc-ccccChhhhhhhhhhccccCCccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEE
Confidence 566 6666777766555 334789999999999999999999999999 89887543 23 2344 555555 568
Q ss_pred EeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecC--CCCCeeEEEEEE
Q 008548 250 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA--GDTSMVDLILNV 327 (562)
Q Consensus 250 I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~--~~~g~vdl~i~V 327 (562)
++.|.|.| . .+++++.|++.+++++|++|..+++++..++|..+++|++|.+++... ..++.++|.|.+
T Consensus 202 ~g~v~~~g------~---~r~~~~~~~~~~~~~~G~~Y~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~ 272 (594)
T COG0729 202 FGPVTVEG------S---QRIDEEYLQNLVPFKYGLPYDPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSV 272 (594)
T ss_pred eCcEEEcc------c---eecCHHHHhhccccCCCCcCCHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEe
Confidence 99999995 3 479999999999999999999999999999999999999999988655 445668999999
Q ss_pred EEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcceeeEEEEEEEcCCcCCCCcceEEEEEEE
Q 008548 328 VERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQ 407 (562)
Q Consensus 328 ~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~~~~~~~lsy~~P~~~~~~~~~s~~~s~~ 407 (562)
.|++...+.+|+||+++ .|.++++.|.++|+|++||++.+..+++...+.+...|..|.++.. ......++.+
T Consensus 273 ~~rk~~~~~lG~gyst~------~G~~~~~~w~~~~~~~~~~~l~~~~~is~~~~~~~~~y~~p~~~~~-~~~~~~~~~~ 345 (594)
T COG0729 273 SERKENTFELGVGYSTD------VGAGLEAGWEKRNLFGRGHSLRIESEISAPLQTLEATYKAPLLFNP-LGQYNPVSAG 345 (594)
T ss_pred cccccceEEeeeEEecc------ccccceEEeeeecccCcceeEeeeeeeccchhcCceEEEeecccCC-ccceeccccc
Confidence 99999999999999987 9999999999999999999999999999887889999999988753 2222222222
Q ss_pred E-------ee--cCC--Cceeeee--cCcce--EEEEEEEee--ec-CCCCce----------e---eccccCCeeEEEE
Q 008548 408 N-------SR--TPG--PLVHRNQ--PDNSS--QTIGRRAGS--HD-EKGNPI----------I---KDFYSSPLYRKFV 456 (562)
Q Consensus 408 ~-------s~--~~g--~~~~~g~--~~~~~--lslg~~~~~--~d-~~g~~~----------~---~d~~~~~l~~~~~ 456 (562)
. .. .++ .....++ ..+|. +.+++.++. .+ ..+... . +|...+.++..+.
T Consensus 346 ~~~~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dd~~~Pt~G~~~~ 425 (594)
T COG0729 346 FDRLDLYDTESDAYTESLSASRGWDASLGWQRSLALRFSYDNFRQGDISGKTSLLTPGVEFSYTRDTDDGLFPTWGDRLD 425 (594)
T ss_pred cccchhhccccccccceeeeeehhccccCceeEEEEEEEccccccccccCCceEEecceEEEEEEccCCCCCCCccceee
Confidence 1 11 111 0001111 22222 333333332 11 011110 0 1122233333333
Q ss_pred EEEeccccCCCCccceEEEEEEEEEEEEcc-CceEEEEeeeeeecc----CCCccCceecCCCCcccCccCCCccc----
Q 008548 457 FDMEQGLPVLPKWLFFNRVNAHARKGVDIS-HARLRLNLSGGHVIG----NFYPHEAFAIGGTNSVRGYEEGAVGS---- 527 (562)
Q Consensus 457 ~~~e~Gl~~~~~~~~f~k~~~~~~~~~~l~-~~~l~lr~~~G~i~g----~lP~~E~F~lGG~~SVRGY~~~~igp---- 527 (562)
+.++-+.....++..|.++.....|+...+ ++.++.|+++|++.+ ++|++.+||+||..|||||.+++|+|
T Consensus 426 ~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~R~~~G~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~ 505 (594)
T COG0729 426 LTIGPSYEALGSDVDFRLVQARSGYLRTGGADHRLAGRGELGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDAN 505 (594)
T ss_pred eeeeeccccccCchHHhhhhccceeeecCccceEEEEecccceEeeCccccCCccceeecCCCcceeccccccccCcCCC
Confidence 333333332334554444445444544444 466999999999875 59999999999999999999999997
Q ss_pred -----cceEEEEEEEEEEecCCCCc-eEEEeccccceee
Q 008548 528 -----GRSYVVGSGEITFPMVCDDN-PIFLSYLDKKLRI 560 (562)
Q Consensus 528 -----G~~~~~~s~E~r~pl~~~~~-~~F~D~G~v~~~~ 560 (562)
|.+++.+++||||++..+|+ ++|+|+|.||+++
T Consensus 506 g~~~Gg~~l~~~s~Ey~~~~t~~~~~a~FvD~G~a~n~~ 544 (594)
T COG0729 506 GDLLGGRSLVTGSLEYQYLVTDPWGLAVFVDAGSAGNNF 544 (594)
T ss_pred CCcccceEEEEeeEEEEEeccCcEEEEEEEEccccccCC
Confidence 78899999999999999999 9999999999875
No 8
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.88 E-value=5.1e-21 Score=205.30 Aligned_cols=276 Identities=17% Similarity=0.163 Sum_probs=148.6
Q ss_pred HhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEEEEcCCceEEEeeeecCCCCCCCccceEE
Q 008548 276 LRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIG 355 (562)
Q Consensus 276 ~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~~~g~g~ss~~~~~~~~G~~~ 355 (562)
.-.+|..+|+++|.++||+++++|++++-. +|++++.|++++|+.+|.|.+++.++. .+.+++++.+++ .+..+++
T Consensus 8 ~~~fP~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~~G~S~i~i~~~~~~~~--~~~~~~DN~Gs~-~TG~~q~ 83 (404)
T PF03865_consen 8 RTAFPNRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEEPGTSDIVIENQPSKPW--SGSLSLDNSGSK-STGRYQG 83 (404)
T ss_dssp ---STT-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SSTTEEEEEEEEEE-SS---EEEEEEEE-SSS--SS-EEE
T ss_pred cccCCCCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCCCCEEEEEEEecccCCE--EEEEEEecCCcc-ccceEEE
Confidence 346789999999999999999999999774 688999999889999999999887764 455555544331 2455899
Q ss_pred EEEEEEecCCCCCcEEEEEEEEcc------eeeEEEEEEEcCCcCCCCcceEEEEEEEEeec--CCC--ce-eeeecCc-
Q 008548 356 SFVYSHRNVFGRNQKLNISLERGQ------IDSILRINYIDPWIEGDDKQTSRTMMVQNSRT--PGP--LV-HRNQPDN- 423 (562)
Q Consensus 356 ~~~l~~~NlfG~g~~ls~s~~~g~------~~~~~~lsy~~P~~~~~~~~~s~~~s~~~s~~--~g~--~~-~~g~~~~- 423 (562)
.+++..+|+||.+|.|++++.... ....+.+.|+.|+..+ .+++..++.+.+. ... .. ..|....
T Consensus 84 ~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G~~---~ls~~~s~s~y~~~~~~~~~~~~~~G~s~~~ 160 (404)
T PF03865_consen 84 GATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYGYW---TLSLFASYSDYRYHQGLSYSTYDLSGDSRSL 160 (404)
T ss_dssp EEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEETTE---EEEEEEEEEEEE---SSSS-----EEEEEEE
T ss_pred EEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeeece---EEEEEEEEeEEEEeeccccceEEeeeeEEEE
Confidence 999999999999999999998742 2457889999998642 2333333322221 110 00 1111111
Q ss_pred -------------ceEEEEEEEe------eecCCCCce-eeccc-----------cCCeeEEEEEEEeccccCC------
Q 008548 424 -------------SSQTIGRRAG------SHDEKGNPI-IKDFY-----------SSPLYRKFVFDMEQGLPVL------ 466 (562)
Q Consensus 424 -------------~~lslg~~~~------~~d~~g~~~-~~d~~-----------~~~l~~~~~~~~e~Gl~~~------ 466 (562)
..+++...+. +.++....+ .+... -..-...+.++.++|+++.
T Consensus 161 ~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~i~v~~~~lt~~~lgl~~~~~~~~g~~~~~l~~~~G~~~~ga~~~~ 240 (404)
T PF03865_consen 161 GLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIEIEVQSRRLTSLELGLNHSRYLGGGVLSANLSYSQGLPWFGAERDP 240 (404)
T ss_dssp EEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS---EEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEE----------
T ss_pred EEEeeEEEEECCCceEEEEEEEEEEEcccccccceeeeccceeeEEEeccceEEEecCcEEEEeEEEEeccCccCCcCCc
Confidence 1122211111 111110000 00000 0111113345556666531
Q ss_pred ------CCccceEEEEEEEEEEEEcc--C--ceEEEEeeeeeeccCCCccCceecCCCCcccCccCCCccccceEEEEEE
Q 008548 467 ------PKWLFFNRVNAHARKGVDIS--H--ARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSG 536 (562)
Q Consensus 467 ------~~~~~f~k~~~~~~~~~~l~--~--~~l~lr~~~G~i~g~lP~~E~F~lGG~~SVRGY~~~~igpG~~~~~~s~ 536 (562)
..+.+|.|+.+.+.++.++. + +.+..++.+||..++|+..|+|.+||.++||||+++++. ||.++.+..
T Consensus 241 ~~~~~~~~~~~f~k~~l~~~~~~~~~~~~~~~~~~~~~~gQys~d~L~ssEq~siGG~~sVRGF~~~~ls-Gd~G~~~rN 319 (404)
T PF03865_consen 241 EDADGNGPDSQFTKWSLNASLYQPFQLGNQPFSYNSSLSGQYSNDNLYSSEQFSIGGRYSVRGFDESSLS-GDSGWYLRN 319 (404)
T ss_dssp ---------EEEEEE---EEEEEEEEETTEEEEEEEEEEEEE-SS-SSSSEE--S------TT----S---SS-SS--EE
T ss_pred hhccCCCcccceEEEEeehhhccceeecCccEEEEEEEEEEECCCCCChhheeccCCCceEcccCCCcee-ecceEEEEE
Confidence 12468999988888777663 3 566778889999889999999999999999999999998 999999999
Q ss_pred EEEEecCC---CCc-eEEEecccccee
Q 008548 537 EITFPMVC---DDN-PIFLSYLDKKLR 559 (562)
Q Consensus 537 E~r~pl~~---~~~-~~F~D~G~v~~~ 559 (562)
|+.+++.. .+. ++|+|+|.|+.+
T Consensus 320 eLs~~~~~~~~~l~py~g~D~G~v~~~ 346 (404)
T PF03865_consen 320 ELSWPFPLGNFSLTPYLGLDYGRVRGN 346 (404)
T ss_dssp SEEEEEEE--SS-EEEEEEEEEEEEES
T ss_pred EEEeecCCCCceEEEEEEEEEEEEecC
Confidence 99887642 255 999999999863
No 9
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=99.74 E-value=1.4e-16 Score=164.22 Aligned_cols=195 Identities=27% Similarity=0.349 Sum_probs=133.6
Q ss_pred cCCCCCcEEEEEEEEcceeeEEEEEEEcCCcCCCCcceEEEEEEEEeec------------CCCceeeee--cCcceEEE
Q 008548 363 NVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRT------------PGPLVHRNQ--PDNSSQTI 428 (562)
Q Consensus 363 NlfG~g~~ls~s~~~g~~~~~~~lsy~~P~~~~~~~~~s~~~s~~~s~~------------~g~~~~~g~--~~~~~lsl 428 (562)
|+||.|+++++++..+...+.+.++|..|++.+++ ++++++++..+. .+.....+. ...+.+++
T Consensus 1 N~~G~g~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (323)
T PF01103_consen 1 NLFGTGQSLSVSATYGSDSQSLSLSYTNPYFFGDR--LSLGFSLYYSSSDSDEFSSYDEQTFGFSLSLGYRISPNWSLSL 78 (323)
T ss_pred CCCCCCeEEEEEEEEcCceEEEEEEEEEcCCCCCC--EEEEEEEEEEEccccccccceeeeccccccceeEcccceEEEE
Confidence 89999999999999988889999999999987654 566666554321 011111122 23345555
Q ss_pred EEEEeeec---CCCCcee----------eccccCCeeEEEEEE-----------------EeccccCCCCccceEEEEEE
Q 008548 429 GRRAGSHD---EKGNPII----------KDFYSSPLYRKFVFD-----------------MEQGLPVLPKWLFFNRVNAH 478 (562)
Q Consensus 429 g~~~~~~d---~~g~~~~----------~d~~~~~l~~~~~~~-----------------~e~Gl~~~~~~~~f~k~~~~ 478 (562)
++.+...+ ....... .......++..+.++ .+.+.....++..|.|+.++
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~~~~~~~~f~k~~~~ 158 (323)
T PF01103_consen 79 GYSYSRNDFSTSSGSPFSDSVSSSDLQDGKSNISSLGLSLSYDTRDNSFFPTKGWYLSFSLEFSGKFLGSDSNFYKFELS 158 (323)
T ss_pred EEEEEEEEEEcCCCcccccccccccccCCceEEEEEEEEEEEecCCCccCCccceEEEEEEEEecccCCCcceEEEEEEE
Confidence 54433211 1111100 001111222222222 22222122357789999999
Q ss_pred EEEEEEcc---CceEEEEeeeeeecc----C-CCccCceecCCCCcccCccCCCccc---------cceEEEEEEEEEEe
Q 008548 479 ARKGVDIS---HARLRLNLSGGHVIG----N-FYPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEITFP 541 (562)
Q Consensus 479 ~~~~~~l~---~~~l~lr~~~G~i~g----~-lP~~E~F~lGG~~SVRGY~~~~igp---------G~~~~~~s~E~r~p 541 (562)
+++|+++. ++++++++.+|++.+ + +|..|+|++||.++||||..++++| |+.++.+++|||+|
T Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~f~lGG~~svRGy~~~~~~~~~~~~~~~gG~~~~~~~~E~r~~ 238 (323)
T PF01103_consen 159 ARYYYPLGNNHKFVLALRLQGGYIFGYSNSDNLPFSERFYLGGPNSVRGYRYRSIGPRDGDGDSLGGDYYFTASAEYRFP 238 (323)
T ss_pred EEEEEECccCCceEEEEeeeeeEeeecccccccchhhhhccCCCCccccccCCccccccccCcccCceEEEEEeeeeEee
Confidence 99999997 368899999998753 3 9999999999999999999999986 59999999999999
Q ss_pred cCC-----CCc-eEEEecccccee
Q 008548 542 MVC-----DDN-PIFLSYLDKKLR 559 (562)
Q Consensus 542 l~~-----~~~-~~F~D~G~v~~~ 559 (562)
+.. .+. ++|+|+|+||+.
T Consensus 239 l~~~~~~~~~~~~~F~D~G~v~~~ 262 (323)
T PF01103_consen 239 LPKIPGSPNLYLVAFADAGNVWND 262 (323)
T ss_pred ccccccCCcEEEEEEEcccccccc
Confidence 943 466 999999999865
No 10
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.74 E-value=3.3e-17 Score=169.90 Aligned_cols=290 Identities=17% Similarity=0.263 Sum_probs=190.2
Q ss_pred EEEEeeEEEEecccCCCCCCCCCCCHHHHHhhccc--cCCCccc-hHHHHHHHHHHHhCCCceeeEEeeec--C--CCCC
Q 008548 247 EAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTT--KKGQVYS-MLQGKRDVETVLTMGIMEDVSIIPQP--A--GDTS 319 (562)
Q Consensus 247 Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~l--k~G~~yn-~~~le~~~~~L~~lG~F~~V~i~~~~--~--~~~g 319 (562)
|.+|+.|.|.|+ .+|++++|.+++.. +...+.+ ......+..+|.++++|++|++.++. + .-|+
T Consensus 35 ~~~v~~V~v~Gl---------~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~ 105 (457)
T KOG2602|consen 35 ESRVDHVIVSGL---------ERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPG 105 (457)
T ss_pred cceeeEEEeccc---------cccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCC
Confidence 458999999964 59999999998862 3333222 12335667788999999999998875 2 4578
Q ss_pred eeEEEEEEEEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEc-ceeeEEEEEEEcCCcCCCCc
Q 008548 320 MVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERG-QIDSILRINYIDPWIEGDDK 398 (562)
Q Consensus 320 ~vdl~i~V~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g-~~~~~~~lsy~~P~~~~~~~ 398 (562)
..+|++.|.|.++ +.+..| ++.. ...-.+.+.+...|++|+|+.|+.+++++ .....+.++|..|.+.+..
T Consensus 106 ~~~Vt~~v~E~kr--~tg~~G--T~~g---n~~~s~~~~l~~~ni~G~ge~l~~~~sy~~~~~~~~~l~f~~P~~~~~~- 177 (457)
T KOG2602|consen 106 GLVVTFLVTEPKR--LTGSTG--TDVG---NREGSVELNLKLPNILGRGENLSGQVSYGCTRSTDMGLSFYKPRFHGLK- 177 (457)
T ss_pred ceeEEEEeeecch--heeecc--cccc---CCCcccchhcccccccCcceeeeeeEEEecccCceeeeEEEecccCCCC-
Confidence 8999999999887 434333 1111 01224668889999999999999999998 5578899999999886532
Q ss_pred ceEEEEE-EEEeecCCCceeeeecCcceEEEEEEE----------------------------eeecCCCCc--------
Q 008548 399 QTSRTMM-VQNSRTPGPLVHRNQPDNSSQTIGRRA----------------------------GSHDEKGNP-------- 441 (562)
Q Consensus 399 ~~s~~~s-~~~s~~~g~~~~~g~~~~~~lslg~~~----------------------------~~~d~~g~~-------- 441 (562)
+.+... ++...... ...........+++.+.+ .++.+.|+.
T Consensus 178 -~~~~~~~~~~~~d~~-~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~~~sq~as~svR~qaG~~L~s~L~~t 255 (457)
T KOG2602|consen 178 -TPFSSFSIFRTQDWM-KWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLGDLSQGASFSVRRQAGHSLKSSLSYT 255 (457)
T ss_pred -cchhhhhhhhhhccc-ccccccccccceEEEEecchhhhhhHHHHHHHHHHhhccccccccHHHHHHhhHHHHHhhcce
Confidence 222211 11110000 000000001112222111 011111211
Q ss_pred eeeccccCCe----eEEEEEEEec-cccCCCCccceEEEEEEEEEEEEcc-CceEEEEeeeeeecc----CCCccCceec
Q 008548 442 IIKDFYSSPL----YRKFVFDMEQ-GLPVLPKWLFFNRVNAHARKGVDIS-HARLRLNLSGGHVIG----NFYPHEAFAI 511 (562)
Q Consensus 442 ~~~d~~~~~l----~~~~~~~~e~-Gl~~~~~~~~f~k~~~~~~~~~~l~-~~~l~lr~~~G~i~g----~lP~~E~F~l 511 (562)
+..|-++.++ +..+..+.|. |+. .+..|.|-+++.++..|+. ..+|.+++++|++.+ .++..|||++
T Consensus 256 fv~D~Rd~~~~ptrG~~~k~~~e~~g~~---~~~sf~k~e~~lq~avpl~~~~~~s~~~~~G~l~~~~~~~v~I~dRFyl 332 (457)
T KOG2602|consen 256 FVFDKRDSSIIPTRGILLKSTSELAGLF---GDVSFLKSELDLQKAVPLGFDATLSFSFSGGVLKPLGSRPVSIADRFYL 332 (457)
T ss_pred EEEeccCCcccccccceeEeehhhcCcc---cchhhhhhhhhheeccccccceeeEeeEeeeeeecCCCCccchhhhhcc
Confidence 0011111111 1122333332 221 3688999999999999998 578999999999874 3778899999
Q ss_pred CCCCcccCccCCCccc--------cceEEEEEEEEEEecCCC------Cc-eEEEeccccce
Q 008548 512 GGTNSVRGYEEGAVGS--------GRSYVVGSGEITFPMVCD------DN-PIFLSYLDKKL 558 (562)
Q Consensus 512 GG~~SVRGY~~~~igp--------G~~~~~~s~E~r~pl~~~------~~-~~F~D~G~v~~ 558 (562)
||+.+||||+.++||| |++++.+++.+-+|++.. +- ++|+.+|++.+
T Consensus 333 GGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr~h~F~naG~l~~ 394 (457)
T KOG2602|consen 333 GGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFRGHVFANAGNLAN 394 (457)
T ss_pred CCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCcccccccceeeEEEeccccccc
Confidence 9999999999999999 999999999999988752 33 99999999764
No 11
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=2e-12 Score=147.61 Aligned_cols=182 Identities=15% Similarity=0.245 Sum_probs=151.3
Q ss_pred EEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ce
Q 008548 150 LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FG 228 (562)
Q Consensus 150 li~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a 228 (562)
.|++|.++-. |..|++.+.|+++|+.| .|.||+.+++++|.+.++. ++|++|+.+.++++.++|++.|..+|| .+
T Consensus 71 ~F~~v~~~~~-~~~Lvv~V~e~p~I~~v-~~~Gn~~i~~~~L~~~l~~--~~g~~~~~~~l~~~~~~l~e~Y~~~G~~~~ 146 (766)
T COG4775 71 YFEDVRVERE-GGTLVVTVKERPVINSV-VFSGNKSIKDDALKKNLKI--KPGEVLNRAKLEADVEALKEAYLSRGYYSV 146 (766)
T ss_pred CCcceEEEEc-CCEEEEEEecCCcEEEE-EEeCCccCChHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHhcCeecc
Confidence 3888988877 46799999999999999 5999999999999999997 999999999999999999999999999 78
Q ss_pred EEEeEEE-ecCcE--EEEEEEEE---EEeeEEEEeccc-------------C----------------------------
Q 008548 229 LVSGVEI-LSGGV--IRLQVAEA---EVNNISIRFLDR-------------K---------------------------- 261 (562)
Q Consensus 229 ~V~~~~~-~~dg~--l~i~I~Eg---~I~~I~i~G~~~-------------~---------------------------- 261 (562)
.|++... .+++. |.|.|.|| +|..|.|.|+.. +
T Consensus 147 ~v~~~~~~~~~~~v~v~f~i~eG~~~~i~~I~~~Gn~~~s~~~l~~~~~~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~ 226 (766)
T COG4775 147 KVTYKVTPLPRNRVDVVFVINEGPSAKIKQINFEGNTAFSDSDLESVVQTKESNIWGWLTRLDKYDPDKLEADLETLRSF 226 (766)
T ss_pred eeEEEEEECCCCeEEEEEEeCCCCccceeeeEEeccccccchhhhhheeeccceeEEEEecccccChhhhhccHHHHHHH
Confidence 9987654 45554 77778776 799999999865 0
Q ss_pred --------------------------------CCCC-------C--CCCCCHHHHHhhccccCCCccchHHHHHHHHHH-
Q 008548 262 --------------------------------TGEP-------T--KGKTRPETILRQLTTKKGQVYSMLQGKRDVETV- 299 (562)
Q Consensus 262 --------------------------------~Gn~-------~--~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L- 299 (562)
||.+ + ......+.|.+++.+++|++|+.++|+++..+|
T Consensus 227 Y~n~Gy~d~~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~~~i~i~g~~~~~~~el~~~~~~~~g~~fn~~~i~~~~~~I~ 306 (766)
T COG4775 227 YLNRGYADFRVSSTQVSLDPDKKGVTVTYTVKEGPQYKFGSVLIEGNLAGVSEELEKLLKVKPGKLFNRKKIEDDADKIK 306 (766)
T ss_pred HHhCceEEEEEeeeeecccCCCccEEEEEEEccCCceEEEEEEEEcCccCcHHHHHHhhccCCCceEcHHHHHHHHHHHH
Confidence 1210 0 012347788999999999999999999988877
Q ss_pred ---HhCCC-ceeeEEeeecCCCCCeeEEEEEEEEcCCceE
Q 008548 300 ---LTMGI-MEDVSIIPQPAGDTSMVDLILNVVERPSGGF 335 (562)
Q Consensus 300 ---~~lG~-F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~ 335 (562)
.+.|| |..|.+.++++.+..+++|.+.|.++++..+
T Consensus 307 ~~~~~~GY~~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V 346 (766)
T COG4775 307 ERYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVYV 346 (766)
T ss_pred HHHHhcCceeeEeeeecccCCCCcEEEEEEEEEcCCceee
Confidence 56799 6778777777777789999999999998544
No 12
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.43 E-value=4.6e-12 Score=147.74 Aligned_cols=172 Identities=15% Similarity=0.213 Sum_probs=138.4
Q ss_pred EEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhh-hcCCCCcccHHHHHHHHHHHHHHHHHCCC-c
Q 008548 150 LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNR-IIDGGKIINIRRLDEVITSINGWYMEHGL-F 227 (562)
Q Consensus 150 li~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~-~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~ 227 (562)
.|++|.|... |..|++.+.|++.++.| .|+||+.+++++|++.++. -+++|++|+...+++++++|+++|.++|| .
T Consensus 71 ~F~~v~v~~~-~~~l~~~v~e~p~I~~I-~~~Gn~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~Y~~~Gy~~ 148 (803)
T PRK11067 71 NFEDVRVLRD-GNTLLVQVKERPTIASI-TFSGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYS 148 (803)
T ss_pred CCceEEEEec-CCEEEEEEecCcEEEEE-EEECcccCCHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHhcCccc
Confidence 4788888754 56789999999999999 5999999999999998832 24899999999999999999999999999 6
Q ss_pred eEEEeEEE-ecCc--EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCC---------CccchHHH
Q 008548 228 GLVSGVEI-LSGG--VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQG 292 (562)
Q Consensus 228 a~V~~~~~-~~dg--~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G---------~~yn~~~l 292 (562)
++|..... .+++ .|++.|.|| +|.+|.|.| | ...+++.|+..+.+++| +.|+..++
T Consensus 149 ~~V~~~~~~~~~~~v~l~~~i~EG~~~~I~~I~f~G------N---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (803)
T PRK11067 149 ASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQINIVG------N---HAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKL 219 (803)
T ss_pred cEEEEEEEECCCCeEEEEEEEecCCeEEEEEEEEEC------C---CCcCHHHHHHHhcCCCCcchhhhccCCccCHHHH
Confidence 99886433 3444 388899984 899999995 4 47889999999998876 77999999
Q ss_pred HHHHHHHH----hCCCceeeEEeee---cCCCCCeeEEEEEEEEcCCc
Q 008548 293 KRDVETVL----TMGIMEDVSIIPQ---PAGDTSMVDLILNVVERPSG 333 (562)
Q Consensus 293 e~~~~~L~----~lG~F~~V~i~~~---~~~~~g~vdl~i~V~E~~~~ 333 (562)
++++++|. +.||+. ++|... ...+...++|++.|+|+++.
T Consensus 220 ~~d~~~l~~~Y~~~Gy~~-a~V~~~~~~~~~~~~~v~i~~~I~eG~~~ 266 (803)
T PRK11067 220 AGDLETLRSYYLDRGYAR-FNIDSTQVSLTPDKKGIYITVNITEGDQY 266 (803)
T ss_pred hhhHHHHHHHHHHCCCce-EEecCcEEEEcCCCceEEEEEEEeeCCcE
Confidence 88888874 459974 334321 12234579999999999974
No 13
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.36 E-value=2.6e-11 Score=139.87 Aligned_cols=169 Identities=15% Similarity=0.219 Sum_probs=134.9
Q ss_pred EEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHh-hhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ce
Q 008548 151 ISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDV-NRIIDGGKIINIRRLDEVITSINGWYMEHGL-FG 228 (562)
Q Consensus 151 i~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l-~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a 228 (562)
|++|.+... +..|+..+.|.+.+..| .|+||+.+++++|++.+ .. ++|++|+.+.+++++++|+++|+++|| .+
T Consensus 49 f~~v~~~~~-~~~l~~~v~e~~~i~~i-~~~G~~~~~~~~l~~~~~~~--~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a 124 (741)
T TIGR03303 49 FEDVKIERE-GGVLVIKVKERPIINSI-VFSGNKEIKKDQLKKALVGI--KKGEIFNRAKLEKDEKALKEFYRSRGKYNA 124 (741)
T ss_pred cceEEEEec-CCEEEEEEEecceEEEE-EEECCccCCHHHHHHHHhhc--cCCCcCCHHHHHHHHHHHHHHHHHcCccee
Confidence 445555433 55678888999999999 59999999999999999 75 999999999999999999999999999 69
Q ss_pred EEEeEEE-ecCc--EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccC---------CCccchHHHH
Q 008548 229 LVSGVEI-LSGG--VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKK---------GQVYSMLQGK 293 (562)
Q Consensus 229 ~V~~~~~-~~dg--~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~---------G~~yn~~~le 293 (562)
+|..... .+++ .|++.|.|| +|++|.|.| | ...+++.|+..+..++ |++|+.+.++
T Consensus 125 ~V~~~~~~~~~~~~~v~~~v~eg~~~~i~~i~~~G------n---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (741)
T TIGR03303 125 KVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVG------N---KAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLE 195 (741)
T ss_pred EEEEEEEECCCCeEEEEEEEecCCEEEEEEEEEEC------C---CcCCHHHHHHHHhcCcchhHHhccCCCeECHHHHh
Confidence 9986543 3444 488999986 799999995 4 4667788888887776 5899999999
Q ss_pred HHHHHH----HhCCCceeeEEe---eecCCCCCeeEEEEEEEEcCCc
Q 008548 294 RDVETV----LTMGIMEDVSII---PQPAGDTSMVDLILNVVERPSG 333 (562)
Q Consensus 294 ~~~~~L----~~lG~F~~V~i~---~~~~~~~g~vdl~i~V~E~~~~ 333 (562)
++.++| .+.||+. +++. +..+.+.+.++|++.|+|+++.
T Consensus 196 ~~~~~i~~~y~~~Gy~~-a~v~~~~~~~~~~~~~~~i~~~v~eG~~~ 241 (741)
T TIGR03303 196 ADLELLRSFYLNRGYLD-FKVESTQVSITPDKKGVYITYNIKEGEQY 241 (741)
T ss_pred hhHHHHHHHHHhCCcEE-EEEcCCEEEECCCCCEEEEEEEeccCCCE
Confidence 888887 4679864 3332 2222346789999999999873
No 14
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.87 E-value=1.1e-08 Score=83.90 Aligned_cols=72 Identities=21% Similarity=0.334 Sum_probs=59.1
Q ss_pred hcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEe-EEEecCcEEEEEEEEE
Q 008548 174 LTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSG-VEILSGGVIRLQVAEA 248 (562)
Q Consensus 174 i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~-~~~~~dg~l~i~I~Eg 248 (562)
++.| .|.||+.++.++|.+.++. ..|++++.+.+++..++|+++|+++|| ++++.. .+...+|+|+|.|.||
T Consensus 3 i~~i-~~~G~~~~~~~~l~~~~~~--~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 3 IKGI-RFEGNTLLPEEELQAILAP--YIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp --EE-EEES-TSSSCCHHHHHHGG--GTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred eEEE-EEECCCcCCHHHHHHHHHH--hcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 4567 4999999999999999998 999999999999999999999999999 888874 5667999999999986
No 15
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.67 E-value=6.7e-08 Score=79.03 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=60.6
Q ss_pred hcccceeecC-ccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEEEecCcE--EEEEEEEE
Q 008548 174 LTVLKACHAN-SALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGVEILSGGV--IRLQVAEA 248 (562)
Q Consensus 174 i~~I~~~~GN-~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~~~~dg~--l~i~I~Eg 248 (562)
+..| .|.|| +.+++++|++.+.. ++|++|+.+.+++++++|.++|.++|| +++|.+.....++. |++.|.||
T Consensus 3 i~~I-~i~Gn~~~~~~~~l~~~l~~--~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 3 IGEI-NIEGNLKKFSDEELRRELGL--KPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEE-EEESE-SSSHHHHHHHCHSS---TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEE-EEEcCceEeCHHHHHhhcCC--CCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcCCEEEEEEEEEeC
Confidence 4567 59998 89999999999985 999999999999999999999999999 89998765433343 78888875
No 16
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.59 E-value=2e-07 Score=76.11 Aligned_cols=73 Identities=27% Similarity=0.290 Sum_probs=62.7
Q ss_pred EEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHH----hCCC-ceeeEEeeecCCCCCeeE
Q 008548 248 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL----TMGI-MEDVSIIPQPAGDTSMVD 322 (562)
Q Consensus 248 g~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~----~lG~-F~~V~i~~~~~~~~g~vd 322 (562)
++|++|.|.|+. ..++++.|++.+.+++|++|+...++++.++|. +.|| |.+|.+.+.++ ++.++
T Consensus 1 ~~i~~I~i~Gn~--------~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~--~~~v~ 70 (78)
T PF07244_consen 1 YRIGEINIEGNL--------KKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPD--DNTVD 70 (78)
T ss_dssp CEEEEEEEESE---------SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEE--TTEEE
T ss_pred CEEEEEEEEcCc--------eEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEc--CCEEE
Confidence 379999999641 378899999999999999999999999999998 9999 78888887765 48899
Q ss_pred EEEEEEEc
Q 008548 323 LILNVVER 330 (562)
Q Consensus 323 l~i~V~E~ 330 (562)
|++.|+|+
T Consensus 71 l~~~V~Eg 78 (78)
T PF07244_consen 71 LTFNVDEG 78 (78)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999985
No 17
>PLN03138 Protein TOC75; Provisional
Probab=98.45 E-value=8.6e-06 Score=92.70 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=100.7
Q ss_pred CccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCceEEEeEEE-ecCcE--EEEEEEEE---EEeeEE--
Q 008548 183 NSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEI-LSGGV--IRLQVAEA---EVNNIS-- 254 (562)
Q Consensus 183 N~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~a~V~~~~~-~~dg~--l~i~I~Eg---~I~~I~-- 254 (562)
++...+++|.+.|.. ++|.+|+.++|++++++|. +.||+..|++... .+++. |+|.|.|+ +|.+|+
T Consensus 162 ~~~~~e~~l~~~i~~--kpG~v~trsqLq~dv~~I~----~tG~F~~V~~~v~~~~dg~v~V~~~i~Eg~~~~I~~I~~i 235 (796)
T PLN03138 162 TTVGTEDSFFEMVTL--RPGGVYTKAQLQKELETLA----SCGMFEKVDLEGKTKPDGTLGLTISFTESTWQSADSFRCI 235 (796)
T ss_pred CCcchHHHHHHHHhc--CCCCccCHHHHHHHHHHHH----hcCCceEEEEEEEeCCCCeEEEEEEEEeCCceeeeeeeec
Confidence 566678888888986 9999999999999999997 9999668887543 56664 77888886 788888
Q ss_pred ----------EEecccC------------C--------CCCCCCCCCHHHHHhhccc--cCCCccchHHHHHHHHHH---
Q 008548 255 ----------IRFLDRK------------T--------GEPTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETV--- 299 (562)
Q Consensus 255 ----------i~G~~~~------------~--------Gn~~~~~t~~~~I~r~l~l--k~G~~yn~~~le~~~~~L--- 299 (562)
|.||..- + |++ ....++++++..+.. +.|. |+.++|++++++|
T Consensus 236 ~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~-~~~Lp~~v~~e~f~~~~~~gk-lN~e~Lq~die~I~~~ 313 (796)
T PLN03138 236 NVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKAR-PCLLPKSVRREVLGMLRDQGK-VSARLLQRIRDRVQKW 313 (796)
T ss_pred ccccccccceeeCCcccCHHHHHHHhhcccccccccccccc-ccccchHHHHHHHhhhccCCc-CCHHHHHHHHHHHHHH
Confidence 8865320 0 000 012344555555554 3444 9999999999887
Q ss_pred -HhCCCceeeEEeeecCCCCCeeEEEEEEEEcCCceEEE
Q 008548 300 -LTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSA 337 (562)
Q Consensus 300 -~~lG~F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~~~ 337 (562)
.+.||. .++|.+.+. .+.++|++.|.|+....+.+
T Consensus 314 Y~d~GYa-fa~V~~~~~--id~g~Vtl~V~EG~i~~I~V 349 (796)
T PLN03138 314 YHDEGYA-CAQVVNFGN--LNTNEVVCEVVEGDITKVVI 349 (796)
T ss_pred HHhCCCc-eEEEecccc--cCCceEEEEEecccEEEEEE
Confidence 567883 234443332 23377899999999876665
No 18
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.31 E-value=1.1e-05 Score=92.82 Aligned_cols=151 Identities=16% Similarity=0.109 Sum_probs=112.3
Q ss_pred EEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCceE
Q 008548 150 LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGL 229 (562)
Q Consensus 150 li~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~a~ 229 (562)
||++|.++|.+++ +|..+++.|+ .++|..++..++++++.+|- +.|||..
T Consensus 109 l~~e~~~~~~~~~------~~~~~~~~~~--------------------~~~G~~~t~~~~~~d~~~i~----~tG~F~~ 158 (718)
T TIGR00992 109 LQKELEVLATCGM------FEKVDYEGKT--------------------TQDGRLGTTISFAESVWAIA----DRFRCIN 158 (718)
T ss_pred eeeeeeeecCcHH------HHHHHhhccc--------------------cCCCCcccHHHHHHHHHHHH----HcEEeee
Confidence 9999999999764 7777777663 38899999999999998874 7999888
Q ss_pred EEeEEE-ecCcE-EEEEEEEE-EEee-EEEEeccc--CCCCCCCCCCCHHHHHhhccccCC-CccchHHHHHHHHHH---
Q 008548 230 VSGVEI-LSGGV-IRLQVAEA-EVNN-ISIRFLDR--KTGEPTKGKTRPETILRQLTTKKG-QVYSMLQGKRDVETV--- 299 (562)
Q Consensus 230 V~~~~~-~~dg~-l~i~I~Eg-~I~~-I~i~G~~~--~~Gn~~~~~t~~~~I~r~l~lk~G-~~yn~~~le~~~~~L--- 299 (562)
|.+... .++|. |+++|.|. .+.. |+|+|+.. +.|+ ...+++++...+..+.| +++|..+|++..++|
T Consensus 159 V~~~~~~~~~Gv~v~~~V~enP~~~~~v~~~g~~~~~~~~~---~~lp~~~l~e~~~~~~G~~~ln~~~L~~~~~~I~~~ 235 (718)
T TIGR00992 159 VGLMPQSKPLEMDVDMEVKEKPEFTRRLEIRYKRRIAEARP---CLLPQEVVDETFGMLYGQGIVSARLLQEIRDRVQEW 235 (718)
T ss_pred eEEeeccCCCceEEEEEEecCCEEEEEEEEeeccccccccc---ccCCHHHHHHHhccccCCeecCHHHHHHHHHHHHHH
Confidence 776433 45565 99999974 7777 99987532 1233 35678889899999999 999999988888777
Q ss_pred -HhCCC-ceeeEEeeecCCCCCeeEEEEEEEEcCCceEEE
Q 008548 300 -LTMGI-MEDVSIIPQPAGDTSMVDLILNVVERPSGGFSA 337 (562)
Q Consensus 300 -~~lG~-F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~~~ 337 (562)
.+.|| +..|...++. .++ +|++.|.|++...+.+
T Consensus 236 Y~~~GY~~A~V~~~~~~--~~~--~V~l~V~EG~i~~I~V 271 (718)
T TIGR00992 236 YHNEGYACAQVVNFGNL--NTD--EVVCEVVEGDITNLQI 271 (718)
T ss_pred HHHCCceeEEEeccCcC--CCC--EEEEEEeccceeEEEE
Confidence 45798 4555443222 233 7888999988544444
No 19
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=87.64 E-value=1.7 Score=34.14 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=50.8
Q ss_pred EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEEE
Q 008548 249 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVV 328 (562)
Q Consensus 249 ~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V~ 328 (562)
+|.+|.|.| + ...+...|...+.+..|+.+-.-+.++..++|...++.++|.+.-.. |+++ .|.|+
T Consensus 2 ~v~~I~V~G------~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~---P~~l--~I~V~ 67 (69)
T PF08478_consen 2 RVKKIEVSG------N---SYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF---PNTL--EIKVK 67 (69)
T ss_dssp S--EEEEES----------SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET---TTEE--EEEEE
T ss_pred CccEEEEEC------C---CcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC---CCEE--EEEEE
Confidence 477899995 4 57889999999999989888777888888889899999999987653 5555 56666
Q ss_pred E
Q 008548 329 E 329 (562)
Q Consensus 329 E 329 (562)
|
T Consensus 68 E 68 (69)
T PF08478_consen 68 E 68 (69)
T ss_dssp E
T ss_pred e
Confidence 6
No 20
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=85.53 E-value=4.5 Score=32.70 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=44.7
Q ss_pred EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHH----hCCCc-eeeEEeeecCCCCCeeEE
Q 008548 249 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL----TMGIM-EDVSIIPQPAGDTSMVDL 323 (562)
Q Consensus 249 ~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~----~lG~F-~~V~i~~~~~~~~g~vdl 323 (562)
.|.+|+|.| + ...+...+.+.+.-..|+.++..+|.+..++|. +.||. +.|.+.++.- .+|.+
T Consensus 2 ~i~~i~~~G------~---~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i-~~G~l-- 69 (76)
T PF08479_consen 2 PIKGIRFEG------N---TLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDI-SDGVL-- 69 (76)
T ss_dssp ---EEEEES----------TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEE-TTSEE--
T ss_pred CeEEEEEEC------C---CcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeec-CCCEE--
Confidence 478899995 3 356677888888888899999999988888774 57995 6677744422 46765
Q ss_pred EEEEEE
Q 008548 324 ILNVVE 329 (562)
Q Consensus 324 ~i~V~E 329 (562)
.+.|.|
T Consensus 70 ~i~V~e 75 (76)
T PF08479_consen 70 TIRVVE 75 (76)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 555554
No 21
>PRK05529 cell division protein FtsQ; Provisional
Probab=83.91 E-value=6.4 Score=39.87 Aligned_cols=71 Identities=15% Similarity=0.333 Sum_probs=56.5
Q ss_pred EEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEE
Q 008548 248 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNV 327 (562)
Q Consensus 248 g~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V 327 (562)
..|.+|.|.| + ..+..+.|...+....|+.+-.-+.++..++|..+.+.++|+++-.. |+++ .|+|
T Consensus 61 ~~v~~I~V~G------n---~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~---P~tl--~I~V 126 (255)
T PRK05529 61 LALRSIEVAG------N---MRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP---PGTI--VVRV 126 (255)
T ss_pred eEEEEEEEEC------C---ccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC---CCEE--EEEE
Confidence 4788999995 4 47888999999998999887666677777888899999999887653 4554 7788
Q ss_pred EEcCC
Q 008548 328 VERPS 332 (562)
Q Consensus 328 ~E~~~ 332 (562)
+|+.+
T Consensus 127 ~Er~p 131 (255)
T PRK05529 127 VERVP 131 (255)
T ss_pred EEeee
Confidence 88876
No 22
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=67.44 E-value=9.5 Score=31.60 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=41.2
Q ss_pred ecCcE--EEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCce
Q 008548 236 LSGGV--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIME 306 (562)
Q Consensus 236 ~~dg~--l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~ 306 (562)
.+.|. +.++|..|+|.+|.|.|.- .....|...-..-.|.+|+.+.|.+.+..+.-..+|.
T Consensus 13 f~~G~v~v~~~V~~G~I~~i~i~gDf----------~~~~~i~~le~~L~G~~~~~~~i~~~l~~~~~~~~~~ 75 (86)
T PF10437_consen 13 FPWGTVEVHLNVKNGIIKDIKIYGDF----------FGPEDIEELEEALIGCPYDREAIKEALNSVDLEDYFG 75 (86)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEEECB----------S-CCCHHHHHHHHTTCBSSHHHHHHHHHHCHGGGTCC
T ss_pred cCCceEEEEEEEECCEEEEEEEECCC----------CCchHHHHHHHHHHhcCCCHHHHHHHHHHhCHhhccc
Confidence 45566 5667778999999999732 1112233332333799999999999998886655654
No 23
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=60.92 E-value=16 Score=28.40 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=39.5
Q ss_pred hcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCceEEEeEEEecCcEEEEEEEE
Q 008548 174 LTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAE 247 (562)
Q Consensus 174 i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~a~V~~~~~~~dg~l~i~I~E 247 (562)
++.| .+.||..++.++|.+.+.. ..|+.+=.- +.+.+.+......|-..+.-... -.++|.|.|.|
T Consensus 3 v~~I-~V~G~~~~~~~~i~~~~~~--~~~~~~~~~----~~~~~~~~l~~~p~V~~v~V~r~-~P~~l~I~V~E 68 (69)
T PF08478_consen 3 VKKI-EVSGNSYLSKEEILQALGI--QKGKNLFSL----DLKKIEQRLEKLPWVKSVSVSRR-FPNTLEIKVKE 68 (69)
T ss_dssp --EE-EEES-SSS-HHHHHHHHCT--TSTTTCCCS----HHHHHHHCCCCTTTEEEEEEEEE-TTTEEEEEEEE
T ss_pred ccEE-EEECCCcCCHHHHHHHhCc--CCCCeEEEE----CHHHHHHHHHcCCCEEEEEEEEe-CCCEEEEEEEe
Confidence 3557 5999999999999999997 667665533 34444555555666333322221 33478888876
No 24
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=60.15 E-value=30 Score=35.26 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=57.1
Q ss_pred EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEEE
Q 008548 249 EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVV 328 (562)
Q Consensus 249 ~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V~ 328 (562)
.|+.|.+.|+ ..+.++.|++.+.+..+..+=.-++++..++|....+.++|.+.-+ =|+++ .|.|+
T Consensus 61 ~i~~v~v~Gn---------~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~---~Pntv--~I~v~ 126 (269)
T COG1589 61 PIRKVSVSGN---------NQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQ---FPNTL--EIEVV 126 (269)
T ss_pred cceEEEEecC---------cccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEe---CCCcE--EEEEE
Confidence 6889999954 4666889999999999998878888999999999999999888754 24554 77888
Q ss_pred EcCC
Q 008548 329 ERPS 332 (562)
Q Consensus 329 E~~~ 332 (562)
|+.+
T Consensus 127 Er~p 130 (269)
T COG1589 127 EREP 130 (269)
T ss_pred Eeee
Confidence 8876
No 25
>PRK10775 cell division protein FtsQ; Provisional
Probab=47.57 E-value=64 Score=33.10 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=49.3
Q ss_pred EEeeEEEEecccCCCCCCCCCCCHHHHHhhc-cc-cCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEE
Q 008548 249 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TT-KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILN 326 (562)
Q Consensus 249 ~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l-~l-k~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~ 326 (562)
.|.+|.|.|+. ..+..+.|+..+ .. .+|..++ -+++...++|.++++..++.|+-.- |++ |.|.
T Consensus 57 pl~~V~V~G~~--------~~~~~~~I~~~i~~~~~~g~f~~-~Dl~~i~~~l~~lPWV~~a~VrR~w---Pdt--L~V~ 122 (276)
T PRK10775 57 PLSKLVVTGER--------HYTTNDDIRQAILALGAPGTFMT-QDVNIIQQQIERLPWIKQVSVRKQW---PDE--LKIH 122 (276)
T ss_pred ceeEEEEeCCe--------eeCCHHHHHHHHhhccCCCCceE-EcHHHHHHHHHcCCCeeEEEEEEeC---CCc--EEEE
Confidence 46668888532 346677777765 33 5677773 4777888889999999988887543 444 5778
Q ss_pred EEEcCC
Q 008548 327 VVERPS 332 (562)
Q Consensus 327 V~E~~~ 332 (562)
|+|..+
T Consensus 123 V~Er~P 128 (276)
T PRK10775 123 LVEYVP 128 (276)
T ss_pred EEEeec
Confidence 888876
No 26
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=30.04 E-value=2.2e+02 Score=32.32 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred EEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHH----HhCCCce-eeEEeeecCCCCCeeE
Q 008548 248 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV----LTMGIME-DVSIIPQPAGDTSMVD 322 (562)
Q Consensus 248 g~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L----~~lG~F~-~V~i~~~~~~~~g~vd 322 (562)
..|.+|++.| + .......+...+.-..|+.+...+|.....+| .+.||.. .|.+- ...-+.|++
T Consensus 73 f~I~~i~l~g------~---~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp-~Q~i~~G~l- 141 (554)
T COG2831 73 FPINRIELEG------N---TLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLP-PQDLKSGTL- 141 (554)
T ss_pred EEEEEEEEeC------C---cccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcC-CCcccCCeE-
Confidence 3566888884 3 35667788888888899999999888777776 4679953 33332 223356655
Q ss_pred EEEEEEEcCCceEEEe
Q 008548 323 LILNVVERPSGGFSAG 338 (562)
Q Consensus 323 l~i~V~E~~~~~~~~g 338 (562)
.|.|.|+.-..+.+.
T Consensus 142 -~l~VveG~i~~i~i~ 156 (554)
T COG2831 142 -RLQVVEGRIEDIRIT 156 (554)
T ss_pred -EEEEeceEeeeEEEc
Confidence 678888776655553
No 27
>PRK05529 cell division protein FtsQ; Provisional
Probab=27.55 E-value=1.6e+02 Score=29.81 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=40.9
Q ss_pred cccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC--ceEEEeEEEecCcEEEEEEEEE
Q 008548 175 TVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL--FGLVSGVEILSGGVIRLQVAEA 248 (562)
Q Consensus 175 ~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY--~a~V~~~~~~~dg~l~i~I~Eg 248 (562)
+.| .+.||..++.++|.+.+.. ..|+.+-.- +.+.+.+...+.-+ .++|... -.++|.|+|.|.
T Consensus 64 ~~I-~V~Gn~~vs~~eI~~~~~~--~~g~~l~~v----d~~~~~~~l~~~P~V~sa~V~r~---~P~tl~I~V~Er 129 (255)
T PRK05529 64 RSI-EVAGNMRVKPQDIVAALRD--QFGKPLPLV----DPETVRKKLAAFPLIRSYSVESK---PPGTIVVRVVER 129 (255)
T ss_pred EEE-EEECCccCCHHHHHHHhcc--cCCCcceeE----CHHHHHHHHhcCCCEeEEEEEEe---CCCEEEEEEEEe
Confidence 345 3777788899999998885 777765322 34445555556666 2444321 345799999985
No 28
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=25.78 E-value=2.1e+02 Score=32.79 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=49.8
Q ss_pred hhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCceE--EEeEEE--ecCcE--EEEEE
Q 008548 172 EALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGL--VSGVEI--LSGGV--IRLQV 245 (562)
Q Consensus 172 ~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~a~--V~~~~~--~~dg~--l~i~I 245 (562)
.....| +|+|-..+.++.|+..+.. +.|++|..+.+.+ +++.|+..+|+.. |.+... .+++. |.+.+
T Consensus 200 y~~g~v-~~~g~~r~~~~~~~~~~~~--~~G~~Y~~~~l~~----~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~ 272 (594)
T COG0729 200 YRFGPV-TVEGSQRIDEEYLQNLVPF--KYGLPYDPEDLAE----LNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSV 272 (594)
T ss_pred EEeCcE-EEccceecCHHHHhhcccc--CCCCcCCHHHHHH----HHHHHhhcCceeeEEEecCccccCcCceeceEEEe
Confidence 457788 6999999999999999996 9999999776655 4555778999543 333222 35555 55555
Q ss_pred EEE
Q 008548 246 AEA 248 (562)
Q Consensus 246 ~Eg 248 (562)
.|.
T Consensus 273 ~~r 275 (594)
T COG0729 273 SER 275 (594)
T ss_pred ccc
Confidence 554
No 29
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=25.63 E-value=2.3e+02 Score=29.69 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred CCHhHHHHHhhhhcCC------CCcccHHHHHHHHHHHHHHHHHCCC-ceE---EE--eEEEecCcE--EEEEEEEEEEe
Q 008548 186 LTVREVQEDVNRIIDG------GKIINIRRLDEVITSINGWYMEHGL-FGL---VS--GVEILSGGV--IRLQVAEAEVN 251 (562)
Q Consensus 186 ~~~~eL~~~l~~~~~~------G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~---V~--~~~~~~dg~--l~i~I~Eg~I~ 251 (562)
++.+++.+.+...+.. -..++.++++...+.-.+.|.+.-+ +.+ .. .....+.|. +.++|.+|+|.
T Consensus 193 ~~~e~~~~~l~~~f~~~~~~~~~~~lt~~e~~~~~~l~~~ky~s~eW~yg~sp~f~~~~~~r~~~G~v~i~l~v~~g~I~ 272 (324)
T TIGR00545 193 ITTEQFLEEMTQAFFTYTERVETYILDENKTPDVEKRAKERFQSWEWNFGKTPKFNFKNKKRFTAGGFELHVQVEKGKIV 272 (324)
T ss_pred CCHHHHHHHHHHHHHhhCCCCceEecCHHHHHHHHHHHHHhcCCccccCCCCCCCceeeeEecCCCcEEEEEEEeCCEEE
Confidence 4566666555431111 1235666655554433345555443 221 11 111124455 66667799999
Q ss_pred eEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHH-hCCCc
Q 008548 252 NISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL-TMGIM 305 (562)
Q Consensus 252 ~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~-~lG~F 305 (562)
++.|.|. ......+......-.|.+|+.+.+++.+..+. -..||
T Consensus 273 ~~~i~gD----------f~~~~~~~~l~~~L~G~~~~~~~i~~~l~~~~~~~~~~ 317 (324)
T TIGR00545 273 DCKFFGD----------FLSVADITPVTNRLIGQKYDYDTFAKELENLDVFKEYF 317 (324)
T ss_pred EEEEECC----------CCCcccHHHHHHHhCCCccCHHHHHHHHHhhhhhhhhh
Confidence 9999952 22333343333333699999999999888765 33344
Done!