Query 008548
Match_columns 562
No_of_seqs 286 out of 2016
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 6.8E-39 2.3E-43 354.8 34.9 369 173-559 60-499 (554)
2 3q6b_A Outer membrane protein 99.8 2.8E-19 9.6E-24 171.1 17.3 153 142-329 28-189 (189)
3 2x8x_X TLR1789 protein, OMP85; 99.8 1E-17 3.4E-22 164.2 20.2 166 163-332 68-235 (235)
4 3mc9_A ALR2269 protein; polype 99.8 5.7E-19 2E-23 182.2 9.9 166 163-331 129-308 (316)
5 2qdf_A OMP85, outer membrane p 99.6 2.9E-15 1E-19 155.0 16.3 150 173-334 160-332 (335)
6 3efc_A OMP85, outer membrane p 99.6 2.4E-14 8.3E-19 151.9 14.3 149 173-333 159-330 (395)
7 2qdf_A OMP85, outer membrane p 99.5 1.5E-13 5E-18 142.2 18.7 174 150-334 55-251 (335)
8 3efc_A OMP85, outer membrane p 99.5 1.5E-13 5.1E-18 145.8 14.6 174 150-335 54-251 (395)
9 3mc9_A ALR2269 protein; polype 99.1 8.7E-10 3E-14 113.4 15.2 164 142-337 55-226 (316)
10 2x8x_X TLR1789 protein, OMP85; 98.9 1.2E-08 3.9E-13 99.4 15.0 144 174-337 7-159 (235)
11 3q6b_A Outer membrane protein 97.4 0.00065 2.2E-08 64.1 10.6 78 248-334 35-117 (189)
12 2qdz_A TPSB transporter FHAC; 96.3 0.11 3.9E-06 56.3 18.3 191 163-407 126-333 (554)
13 2vh1_A FTSQ, cell division pro 70.7 14 0.00049 34.6 8.7 69 250-332 1-72 (220)
14 2vh2_A FTSQ, cell division pro 62.1 14 0.00049 35.7 6.9 71 249-332 27-98 (255)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=6.8e-39 Score=354.75 Aligned_cols=369 Identities=13% Similarity=0.053 Sum_probs=272.4
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeE-EEecCcEEEEEEEEEEE
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGV-EILSGGVIRLQVAEAEV 250 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~-~~~~dg~l~i~I~Eg~I 250 (562)
.+..| .|+||+.+++++|++++.. ++|++|+.++|++++++|+++|+++|| +++|... +...+++|+|.|.||+|
T Consensus 60 ~i~~I-~~~G~~~~~~~~l~~~~~~--~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i~v~eG~i 136 (554)
T 2qdz_A 60 TVHAV-DLDFGVEGRLFDPAPLVQD--YLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRI 136 (554)
T ss_dssp SSCCE-EEECCSSSCCCSCSTTSTT--SSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEEEEEECCEE
T ss_pred EEEEE-EEECCccCCHHHHHHHhHh--hcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEEEEEEeEEE
Confidence 46667 4888888899999888886 899999999999999999999999999 8998754 34577899999999999
Q ss_pred eeEEEEecccCCCCCCCCCCCHHHHHh---hccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEE
Q 008548 251 NNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNV 327 (562)
Q Consensus 251 ~~I~i~G~~~~~Gn~~~~~t~~~~I~r---~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V 327 (562)
++|.|.| + .++++.+|++ ++++++|++||.++|++++++|++++ .+|++.+.|+.++++++|+|.|
T Consensus 137 ~~I~i~G------~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g~~~l~v~v 205 (554)
T 2qdz_A 137 KGWLIDG------K---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYGYSYLDLQL 205 (554)
T ss_dssp EEEEETT------E---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEEECC------C---CccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCCeeEEEEEE
Confidence 9999984 4 4778999999 99999999999999999999999999 7799999888778999999999
Q ss_pred EEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcc-------eeeEEEEEEEcCCcCCCCcce
Q 008548 328 VERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQ-------IDSILRINYIDPWIEGDDKQT 400 (562)
Q Consensus 328 ~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~-------~~~~~~lsy~~P~~~~~~~~~ 400 (562)
+|+++..+.++++....++ ..+.++++.+++.++|+||.|++|++++..+. ..+.+.++|+.||... .+
T Consensus 206 ~e~~~~~~~~g~~~~g~g~-~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~~---~~ 281 (554)
T 2qdz_A 206 QRRALPRVSLGMDNSGPGT-PENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRT---RL 281 (554)
T ss_dssp EECCSCEEEEEEEECSCSS-SCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETTE---EE
T ss_pred eeCCcEEEEEEEcCCCCCC-CCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEecC---eE
Confidence 9988765555544322001 01245899999999999999999999999985 6789999999998742 23
Q ss_pred EEEEEEEEeec--CCC----cee---------eeec----CcceEEEEEEEeeecC----CCCce-eeccccCCeeE---
Q 008548 401 SRTMMVQNSRT--PGP----LVH---------RNQP----DNSSQTIGRRAGSHDE----KGNPI-IKDFYSSPLYR--- 453 (562)
Q Consensus 401 s~~~s~~~s~~--~g~----~~~---------~g~~----~~~~lslg~~~~~~d~----~g~~~-~~d~~~~~l~~--- 453 (562)
++.+++.+.+. .+. ... .+++ ..+.+++++.+.+.+. .+..+ ..+.....+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (554)
T 2qdz_A 282 DLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQ 361 (554)
T ss_dssp EEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCCCEEEEEEEEEEEEE
T ss_pred EEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCccccCceEEEEEEEEE
Confidence 33333333221 110 000 1111 1233333333222110 01100 00000111111
Q ss_pred ----------EEEEEEeccccC----------CCCccceEEEEEEEEEEEEc---c-CceEEEEeeeeeeccCCCccCce
Q 008548 454 ----------KFVFDMEQGLPV----------LPKWLFFNRVNAHARKGVDI---S-HARLRLNLSGGHVIGNFYPHEAF 509 (562)
Q Consensus 454 ----------~~~~~~e~Gl~~----------~~~~~~f~k~~~~~~~~~~l---~-~~~l~lr~~~G~i~g~lP~~E~F 509 (562)
...++...|+.+ ..++..|.|+.+++++++++ + ++++.+++.+|+..+++|++|+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~lp~~e~f 441 (554)
T 2qdz_A 362 YSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQI 441 (554)
T ss_dssp EEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSCSSSSEEC
T ss_pred EEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEecCCCCCcHHhE
Confidence 222223334321 12467999999999999996 3 47788888888887789999999
Q ss_pred ecCCCCcccCccCCCccccceEEEEEEEEEEec-----C--CCCc-eEEEecccccee
Q 008548 510 AIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM-----V--CDDN-PIFLSYLDKKLR 559 (562)
Q Consensus 510 ~lGG~~SVRGY~~~~igpG~~~~~~s~E~r~pl-----~--~~~~-~~F~D~G~v~~~ 559 (562)
++||.+|||||++++++||+.++.+++|||||+ . ..+. ++|+|+|++|..
T Consensus 442 ~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~ 499 (554)
T 2qdz_A 442 TVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSN 499 (554)
T ss_dssp CSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECS
T ss_pred ecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecC
Confidence 999999999999999999999999999999996 2 2466 999999999964
No 2
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.82 E-value=2.8e-19 Score=171.10 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=126.9
Q ss_pred CCCCCCceEEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHH
Q 008548 142 SRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWY 221 (562)
Q Consensus 142 ~~~~~~~vli~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y 221 (562)
+..+++|+.|.+|.+ .||..+++++|++.+.. ++|++|+.+.+++++++|.++|
T Consensus 28 ~~~~~~~y~i~~I~i------------------------~G~~~~~~~~L~~~~~~--~~G~~~~~~~l~~~~~~I~~~y 81 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEV------------------------SGNLAGHSAEIEQLTKI--EPGELYNGTKVTKMEDDIKKLL 81 (189)
T ss_dssp -------CEEEEEEE------------------------EEECTTCHHHHHHHTCC--CTTCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEEE------------------------ECCCcCCHHHHHHhhCC--CCCCeeCHHHHHHHHHHHHHHH
Confidence 456778888887754 45556678889998886 9999999999999999999999
Q ss_pred HHCCC-ceEEEeE-EEe-cCcE--EEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHH
Q 008548 222 MEHGL-FGLVSGV-EIL-SGGV--IRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGK 293 (562)
Q Consensus 222 ~~~GY-~a~V~~~-~~~-~dg~--l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le 293 (562)
+++|| +++|... +.. .+++ |+|.|.|| +|++|.|.| + .++++.+|++.+++++|++||.++++
T Consensus 82 ~~~GY~~a~v~~~~~~d~~~~~v~l~~~V~eG~~~~i~~I~i~G------n---~~~~~~~i~r~l~~~~G~~~n~~~l~ 152 (189)
T 3q6b_A 82 GRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEG------N---DTSKDAVLRREMRQMEGAWLGSDLVD 152 (189)
T ss_dssp HTTTCCSCEEEEEEEEETTTTEEEEEEEEECCCCCEEEEEEEES------C---SSSCHHHHHTTCCSCTTSBCCHHHHH
T ss_pred HhCCCceEEeeEEEEecCCCCEEEEEEEECCCCeEEEEEEEEEC------C---ccCCHHHHHhhccCCCCCccCHHHHH
Confidence 99999 8999874 333 4454 78889988 799999995 4 58899999999999999999999999
Q ss_pred HHHHHHHhCCCceeeEEeeecC-CCCCeeEEEEEEEE
Q 008548 294 RDVETVLTMGIMEDVSIIPQPA-GDTSMVDLILNVVE 329 (562)
Q Consensus 294 ~~~~~L~~lG~F~~V~i~~~~~-~~~g~vdl~i~V~E 329 (562)
++.++|.++|+|++|++.+.+. ..+++++|.|.|+|
T Consensus 153 ~~~~~L~~lg~F~~V~i~~~~~~~~~~~vdv~v~V~E 189 (189)
T 3q6b_A 153 QGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE 189 (189)
T ss_dssp HHHHHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCceeeEEEeccCCCCCCEEEEEEEEEC
Confidence 9999999999999999998876 36789999999986
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.78 E-value=1e-17 Score=164.25 Aligned_cols=166 Identities=33% Similarity=0.522 Sum_probs=139.1
Q ss_pred eeeeeeehhhhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeE-EEecCcE
Q 008548 163 ELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGV-EILSGGV 240 (562)
Q Consensus 163 ~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~-~~~~dg~ 240 (562)
.+...+.|.+.++.| .|.||..+++++|++.+.. ++|++|+...+++++++|.++|+++|| +++|... +...++.
T Consensus 68 ~l~~~v~eg~~i~~i-~~~G~~~~~~~~l~~~~~~--~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~ 144 (235)
T 2x8x_X 68 RITFVVRPYPVLRAV-QVAGNQVLTQEKVNEIFAP--QIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGV 144 (235)
T ss_dssp EEEEEEEECCBCCEE-EEESCSSSCHHHHHHHHGG--GTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTSE
T ss_pred EEEEEEEecceEEEE-EEECCccCCHHHHHHHhCc--cCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCcE
Confidence 355666777789999 5999999999999999886 999999999999999999999999999 8999865 4456678
Q ss_pred EEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCe
Q 008548 241 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSM 320 (562)
Q Consensus 241 l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~ 320 (562)
|+|.|.||.+..|.|.... -.|+....++++.+|++.+++++|++|+..++++++++|.++|+|++|++.+.++..++.
T Consensus 145 l~~~v~eG~~~~i~i~~i~-~~G~~~~~~~~~~~i~~~~~~~~G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~~~~ 223 (235)
T 2x8x_X 145 VTLQVAEGVVEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRR 223 (235)
T ss_dssp EEEEEECCBEEEEEEEEBC-TTSCBCCCCSCHHHHHTTCSCCTTSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSSTTS
T ss_pred EEEEEEeCceEEEEEEEec-ccCCcCCCccchhheeeeeecCCCCccCHHHHHHHHHHHHhcCCcccceEEeccCCCCCe
Confidence 9999998866555542110 014411137899999999999999999999999999999999999999999988766889
Q ss_pred eEEEEEEEEcCC
Q 008548 321 VDLILNVVERPS 332 (562)
Q Consensus 321 vdl~i~V~E~~~ 332 (562)
++|.|.|+|+++
T Consensus 224 ~~l~i~v~e~~t 235 (235)
T 2x8x_X 224 VNLILNIKERNT 235 (235)
T ss_dssp EEEEEEEEECCC
T ss_pred eEEEEEEEeCCC
Confidence 999999999874
No 4
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.77 E-value=5.7e-19 Score=182.16 Aligned_cols=166 Identities=33% Similarity=0.505 Sum_probs=76.2
Q ss_pred eeeeeeehhhhhcccceeecC------ccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEe-EE
Q 008548 163 ELERKYLGTEALTVLKACHAN------SALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSG-VE 234 (562)
Q Consensus 163 ~l~~~~~e~~~i~~I~~~~GN------~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~-~~ 234 (562)
.|...+.|.+.+..| .|.|| +.+++++|++.+.. ++|++|+.+.|++++++|+++|+++|| +++|.. .+
T Consensus 129 ~l~~~V~egp~I~~I-~~~Gn~~~~~~~~~~~~~L~~~l~l--~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~ 205 (316)
T 3mc9_A 129 RVSFIVQPNPVLSKV-EIQANPGTNVPSVLPQATADEIFRA--QYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205 (316)
T ss_dssp EEEEEEEECCBCCEE-EEECCC----CCSSCTTHHHHHHGG--GTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCE
T ss_pred EEEEEEecCceEEEE-EEeccccccccccCCHHHHHHHhcc--cCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccE
Confidence 356667777889999 59999 89999999999986 999999999999999999999999999 899985 45
Q ss_pred EecCcEEEEEEEEEEEeeEEEE-----eccc-CCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceee
Q 008548 235 ILSGGVIRLQVAEAEVNNISIR-----FLDR-KTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 308 (562)
Q Consensus 235 ~~~dg~l~i~I~Eg~I~~I~i~-----G~~~-~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V 308 (562)
+..+++|+|.|+||+|++|.|. |+.. ..|+++..++++.+|++++++++|++||.++|++++++|+++|+|++|
T Consensus 206 ~~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~vI~r~l~~~~G~~yn~~~l~~~~~~L~~lg~F~~V 285 (316)
T 3mc9_A 206 VSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQKDLQRVFGTGLFEDV 285 (316)
T ss_dssp ECTTSEEEEEEECCEEC---------------------------------------------------------------
T ss_pred ECCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHHHHhhhccCCCCcCCHHHHHHHHHHHHcCCCccee
Confidence 5567889999999987776665 2210 014433358899999999999999999999999999999999999999
Q ss_pred EEeeecCCCCCeeEEEEEEEEcC
Q 008548 309 SIIPQPAGDTSMVDLILNVVERP 331 (562)
Q Consensus 309 ~i~~~~~~~~g~vdl~i~V~E~~ 331 (562)
++.+.++..++++||.|+|+|+.
T Consensus 286 ~v~~~p~~~~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 286 NVSLDPGTDPTKVNVVVNVVERS 308 (316)
T ss_dssp -----------------------
T ss_pred eEEeecCCCCCeEEEEEEEEEcc
Confidence 99998887789999999999975
No 5
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.63 E-value=2.9e-15 Score=155.03 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=125.6
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCC---------CcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEEE-e-c-Cc
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGG---------KIINIRRLDEVITSINGWYMEHGL-FGLVSGVEI-L-S-GG 239 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G---------~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~~-~-~-dg 239 (562)
.+..| .|.||..+++++|++.+.. ++| ++|+.+.+++++++|.++|+++|| +++|...+. . . ++
T Consensus 160 ~i~~I-~~~G~~~~~~~~l~~~~~~--~~g~~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~ 236 (335)
T 2qdf_A 160 EIQQI-NIVGNHAFTTDELISHFQL--RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKK 236 (335)
T ss_dssp EEEEE-EEESCCSSCHHHHHGGGSC--C--------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSS
T ss_pred EEEEE-EEECCccCCHHHHHHHhcc--CCCccccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCC
Confidence 47778 5999999999999998864 776 999999999999999999999999 899976432 2 2 34
Q ss_pred --EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHh----CCC-ceeeE
Q 008548 240 --VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT----MGI-MEDVS 309 (562)
Q Consensus 240 --~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~----lG~-F~~V~ 309 (562)
.|++.|.|| +|++|.|.|+ ..+++..|++.+++++|++||..+++++.++|.+ .|| |.+|.
T Consensus 237 ~v~v~i~v~eG~~~~i~~I~i~g~---------~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~l~~~~~~~Gy~f~~v~ 307 (335)
T 2qdf_A 237 GIYVTVNITEGDQYKLSGVEVSGN---------LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQ 307 (335)
T ss_dssp EEEEEEEEECCCCCEEEEEEEEEE---------CTTCHHHHHHHTCCCTTEECCHHHHHHHHHHHHHHHHTTTBSSCEEE
T ss_pred EEEEEEEEccCCcEEEEEEEEEcc---------ccCChHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 388889987 8999999964 4789999999999999999999999999999974 598 88888
Q ss_pred EeeecCCCCCeeEEEEEEEEcCCce
Q 008548 310 IIPQPAGDTSMVDLILNVVERPSGG 334 (562)
Q Consensus 310 i~~~~~~~~g~vdl~i~V~E~~~~~ 334 (562)
+.+.++.++++++|.+.|+|+++..
T Consensus 308 ~~~~~~~~~~~vdv~i~v~e~~~~~ 332 (335)
T 2qdf_A 308 SMPEINDADKTVKLRVNVDAGNRFY 332 (335)
T ss_dssp EEEEEETTTTEEEEEEEEECCCBCC
T ss_pred EeeEecCCCCEEEEEEEEeeCCeEE
Confidence 8888776789999999999998754
No 6
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.55 E-value=2.4e-14 Score=151.90 Aligned_cols=149 Identities=13% Similarity=0.211 Sum_probs=126.5
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCC---------CcccHHHHHHHHHHHHHHHHHCCC-ceEEEeEEE--ecC--
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGG---------KIINIRRLDEVITSINGWYMEHGL-FGLVSGVEI--LSG-- 238 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G---------~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~~~--~~d-- 238 (562)
.+..| +|.||+.+++++|.+.+.. ++| ++|+.+.+++++++|.++|+++|| .++|...++ .++
T Consensus 159 ~I~~I-~~~Gn~~~~~~~L~~~~~~--~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~ 235 (395)
T 3efc_A 159 EIQQI-NIVGNHAFTTDELISHFQL--RDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKK 235 (395)
T ss_dssp CCCCC-EEESCCSSCTTTTGGGCCC--CSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSC
T ss_pred EEEEE-EEECCcccCHHHHHHHHhC--CCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEEeccEEEECCCCc
Confidence 57889 6999999999999999986 889 999999999999999999999999 899986432 223
Q ss_pred c-EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHH----HHhCCC-ceeeE
Q 008548 239 G-VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET----VLTMGI-MEDVS 309 (562)
Q Consensus 239 g-~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~----L~~lG~-F~~V~ 309 (562)
. .|++.|.|| +|++|.|.| + ..+++..|++.+.+++|++|+..+++++.++ +.+.|| |.+|.
T Consensus 236 ~v~v~i~V~eG~~y~i~~I~i~G------n---~~~~~~~l~~~~~l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~~~v~ 306 (395)
T 3efc_A 236 GIYVTVNITEGDQYKLSGVEVSG------N---LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQ 306 (395)
T ss_dssp SEECEEEEECCCCCEEEEECCBS------C---CTTCHHHHHHTCCCCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred EEEEEEEEecCCCEEEEEEEEEC------C---CCCCHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHhCCCCccEEE
Confidence 2 388999987 899999984 4 4678899999999999999999999988544 467899 56677
Q ss_pred EeeecCCCCCeeEEEEEEEEcCCc
Q 008548 310 IIPQPAGDTSMVDLILNVVERPSG 333 (562)
Q Consensus 310 i~~~~~~~~g~vdl~i~V~E~~~~ 333 (562)
+.+..+.++++++|.+.|.|+++.
T Consensus 307 ~~~~~~~~~~~v~l~~~v~eG~~~ 330 (395)
T 3efc_A 307 SMPEINDADKTVKLRVNVDAGNRF 330 (395)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCC
T ss_pred EeeEecCCCCEEEEEEEEEeCCeE
Confidence 666666678999999999999874
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.54 E-value=1.5e-13 Score=142.21 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=134.7
Q ss_pred EEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhhh-cCCCCcccHHHHHHHHHHHHHHHHHCCC-c
Q 008548 150 LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRI-IDGGKIINIRRLDEVITSINGWYMEHGL-F 227 (562)
Q Consensus 150 li~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~-~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~ 227 (562)
.|++|.++.. |..|+..+.|.+.+..| .|.||+.+++++|++.+... +..|++|+...+++++++|+++|+++|| .
T Consensus 55 ~f~~v~v~~~-~~~l~~~V~e~p~I~~i-~~~Gn~~~~~~~l~~~l~~~~l~~g~~~~~~~~~~~~~~l~~~y~~~GY~~ 132 (335)
T 2qdf_A 55 NFEDVRVLRD-GDTLLVQVKERPTIASI-TFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYS 132 (335)
T ss_dssp CEEEEEEEEE-TTEEEEEEEECCEEEEE-EEESCCSSCHHHHHHHHHTTTCCTTSBCCTTSHHHHHHHHHHHGGGGTBSS
T ss_pred CcceEEEEeC-CCEEEEEEEeccEEEEE-EEECCccCCHHHHHHHHHhcCCCCCcccCHHHHHHHHHHHHHHHHHcCCcc
Confidence 4556666543 55678888899999999 59999999999999999751 2489999999999999999999999999 7
Q ss_pred eEEEeEEE-ecCc--EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCC---------CccchHHH
Q 008548 228 GLVSGVEI-LSGG--VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQG 292 (562)
Q Consensus 228 a~V~~~~~-~~dg--~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G---------~~yn~~~l 292 (562)
|+|..... .+++ .|+|.|+|| +|++|.|.| + ...++..|++.+.+++| ++|+..++
T Consensus 133 a~v~~~~~~~~~~~~~v~~~i~eG~~~~i~~I~~~G------~---~~~~~~~l~~~~~~~~g~~~~~~~~g~~~~~~~l 203 (335)
T 2qdf_A 133 ASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVG------N---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKL 203 (335)
T ss_dssp CEEEEEEEEETTTEEEEEEEEECCCBCEEEEEEEES------C---CSSCHHHHHGGGSCC--------------CCSCH
T ss_pred eEEEEEEEECCCCeEEEEEEEecCCEEEEEEEEEEC------C---ccCCHHHHHHHhccCCCccccccccCCeeCHHHH
Confidence 99987554 3555 488999987 599999995 4 46788899999999987 99999999
Q ss_pred HHHHHHH----HhCCCc-eeeEE-eeecCCCCCeeEEEEEEEEcCCce
Q 008548 293 KRDVETV----LTMGIM-EDVSI-IPQPAGDTSMVDLILNVVERPSGG 334 (562)
Q Consensus 293 e~~~~~L----~~lG~F-~~V~i-~~~~~~~~g~vdl~i~V~E~~~~~ 334 (562)
++..++| .+.||+ ..|.. .+..+.++++++|.+.|.|+++..
T Consensus 204 ~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~~~~v~v~i~v~eG~~~~ 251 (335)
T 2qdf_A 204 AGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYK 251 (335)
T ss_dssp HHHHHHHHHHHHTTTCTTCEEEEEEEEECTTSSEEEEEEEEECCCCCE
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCCEEEEcCCCCEEEEEEEEccCCcEE
Confidence 9887776 456886 33322 344444578899999999998743
No 8
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.49 E-value=1.5e-13 Score=145.82 Aligned_cols=174 Identities=15% Similarity=0.226 Sum_probs=141.4
Q ss_pred EEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhh-hcCCCCcccHHHHHHHHHHHHHHHHHCCC-c
Q 008548 150 LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNR-IIDGGKIINIRRLDEVITSINGWYMEHGL-F 227 (562)
Q Consensus 150 li~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~-~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~ 227 (562)
.|++|.+.-. |..|++.+.|.+.++.| .|+||+.+++++|.+.++. -+++|++|+.+.+++++++|+++|+++|| .
T Consensus 54 ~F~dv~v~~~-g~~l~~~v~e~p~I~~I-~~~Gn~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~ 131 (395)
T 3efc_A 54 NFEDVRVLRD-GDTLLVQVKERPTIASI-TFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYS 131 (395)
T ss_dssp CEEEEEEECC-SSEEEEEEEECCEEEEE-EEESCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCS
T ss_pred CccEEEEEEe-CCEEEEEEEEccEEEEE-EEECCccCCHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHcCccc
Confidence 5889988765 77889999999999999 5999999999999987641 15899999999999999999999999999 6
Q ss_pred eEEEeEEE-ecCc--EEEEEEEEE---EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCC---------CccchHHH
Q 008548 228 GLVSGVEI-LSGG--VIRLQVAEA---EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKG---------QVYSMLQG 292 (562)
Q Consensus 228 a~V~~~~~-~~dg--~l~i~I~Eg---~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G---------~~yn~~~l 292 (562)
|+|..... .+++ .|+|.|.|| +|++|.|.| | ...+++.|++.+.+++| ++|+...+
T Consensus 132 a~V~~~~~~~~~~~v~l~~~V~eG~~~~I~~I~~~G------n---~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l 202 (395)
T 3efc_A 132 ASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVG------N---HAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKL 202 (395)
T ss_dssp CEEEEECCBCTTSEEEEEEEEECCCCCCCCCCEEES------C---CSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHH
T ss_pred eEEEEEEEECCCCEEEEEEEEecCCeEEEEEEEEEC------C---cccCHHHHHHHHhCCCCccchhhccCCccCHHHH
Confidence 89987643 3333 388999987 699999995 4 46677888999999999 99999999
Q ss_pred HHHHHHH----HhCCCceeeEEeee---cCCCCCeeEEEEEEEEcCCceE
Q 008548 293 KRDVETV----LTMGIMEDVSIIPQ---PAGDTSMVDLILNVVERPSGGF 335 (562)
Q Consensus 293 e~~~~~L----~~lG~F~~V~i~~~---~~~~~g~vdl~i~V~E~~~~~~ 335 (562)
+++.++| .+.||+. +.+... ..++.+.++|++.|.|+++..+
T Consensus 203 ~~d~~~l~~~y~~~GY~~-a~v~~~~~~~~~~~~~v~v~i~V~eG~~y~i 251 (395)
T 3efc_A 203 AGDLETLRSYYLDRGYAR-FNIDSTQVSLTPDKKGIYVTVNITEGDQYKL 251 (395)
T ss_dssp HHHHHHHHHHHHHTTCTT-CEEEECCCEECTTSCSEECEEEEECCCCCEE
T ss_pred HhHHHHHHHHHHhCCCce-EEEeccEEEECCCCcEEEEEEEEecCCCEEE
Confidence 9888777 4789973 334332 2234567899999999997544
No 9
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.10 E-value=8.7e-10 Score=113.43 Aligned_cols=164 Identities=20% Similarity=0.262 Sum_probs=113.2
Q ss_pred CCCCCCceEEEEEEEEecCCCeeeeeeehhhhhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHH
Q 008548 142 SRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWY 221 (562)
Q Consensus 142 ~~~~~~~vli~~V~v~g~~g~~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y 221 (562)
++.+++++.|++|.++|.+|.. ..+++++|.+.+.. ++|+.|+.+++++++++|.
T Consensus 55 ~~~Eg~~~~I~~I~i~Gn~~~~--------------------~~~~~~~l~~~l~~--k~G~~~~~~~l~~di~~L~--- 109 (316)
T 3mc9_A 55 PETTEPRVLVSEVLVRPQSGQL--------------------TPELETQVYNVIRT--QPGRTTTRSQLQEDINAIF--- 109 (316)
T ss_dssp ---CCCCEEEEEEEEEESSSCC--------------------CHHHHHHHHHHCCC--CTTSEECHHHHHHHHHHHH---
T ss_pred CCCCCCceEEEEEEEECCcccc--------------------cccCHHHHHhhccC--CCCCccCHHHHHHHHHHHH---
Confidence 6678888888888776664310 34467888888886 9999999999999987775
Q ss_pred HHCCCceEEEeEEE-ecCc-EEEEEEEEE-EEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHH
Q 008548 222 MEHGLFGLVSGVEI-LSGG-VIRLQVAEA-EVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVET 298 (562)
Q Consensus 222 ~~~GY~a~V~~~~~-~~dg-~l~i~I~Eg-~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~ 298 (562)
+.|||+.|..... ..++ .|+|.|.|+ +|++|.|.|+....|+ ...+.+.|++.+.+++|++|+...++++.++
T Consensus 110 -~~GyF~~V~v~~~~~~~~v~l~~~V~egp~I~~I~~~Gn~~~~~~---~~~~~~~L~~~l~l~~G~~~n~~~l~~~~~~ 185 (316)
T 3mc9_A 110 -GTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEIQANPGTNVP---SVLPQATADEIFRAQYGKILNLRDLQEGIKE 185 (316)
T ss_dssp -HTSCEEEEEEEEEEETTEEEEEEEEEECCBCCEEEEECCC----C---CSSCTTHHHHHHGGGTTSBCCHHHHHHHHHH
T ss_pred -HCCCceEEEEEEecCCCeEEEEEEEecCceEEEEEEecccccccc---ccCCHHHHHHHhcccCCCeeCHHHHHHHHHH
Confidence 4799766654322 2344 388999998 8999999965110011 2456778999999999999999999987777
Q ss_pred H----HhCCC-ceeeEEeeecCCCCCeeEEEEEEEEcCCceEEE
Q 008548 299 V----LTMGI-MEDVSIIPQPAGDTSMVDLILNVVERPSGGFSA 337 (562)
Q Consensus 299 L----~~lG~-F~~V~i~~~~~~~~g~vdl~i~V~E~~~~~~~~ 337 (562)
| .+.|| |..|.+..... .++. |.|.|.|++-..+.+
T Consensus 186 I~~~y~~~GY~~A~V~~~~~~~-~~g~--l~i~V~eG~i~~i~v 226 (316)
T 3mc9_A 186 LTKRYQDQGYVLANVVGAPQVS-ENGV--VTLQVAEGVVENISV 226 (316)
T ss_dssp HHHHHHHTTCTTCEECSSCEEC-TTSE--EEEEEECCEEC----
T ss_pred HHHHHHHCCCeeEEeeeccEEC-CCCE--EEEEEEcCccccEEE
Confidence 7 46899 56665444433 2353 789999984333333
No 10
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=98.94 E-value=1.2e-08 Score=99.43 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=107.4
Q ss_pred hcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCc--eEEEeEEEecCc-EEEEEEEEE-E
Q 008548 174 LTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLF--GLVSGVEILSGG-VIRLQVAEA-E 249 (562)
Q Consensus 174 i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~--a~V~~~~~~~dg-~l~i~I~Eg-~ 249 (562)
+..| .|+||.....+.|...+.. ++|+.|+.+.+++++++| .+.||| ++|.... ..++ .|++.|.|+ +
T Consensus 7 I~~I-~i~G~~~~~~~~i~~~l~~--~~g~~~~~~~~~~~~~~L----~~~Gyf~~~~v~~~~-~~~~~~l~~~v~eg~~ 78 (235)
T 2x8x_X 7 IAEV-VVEGATPELEQLVYQVIST--RPGSTTTRTQLQQDTNAI----FATGFFADVNAVPRD-TPLGVRITFVVRPYPV 78 (235)
T ss_dssp EEEE-EEESCCHHHHHHHHHHCCC--CTTCEECHHHHHHHHHHH----HTTSCEEEEEEEEEE-ETTEEEEEEEEEECCB
T ss_pred EEEE-EEECCCccCHHHHHHhhcc--CCCCccCHHHHHHHHHHH----HHCCCcEEEEEEEec-CCCcEEEEEEEEecce
Confidence 3445 3667766677788888886 999999999999999887 569984 4554433 2333 489999988 8
Q ss_pred EeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHH----HhCCCc-eeeEEeeecCCCCCeeEEE
Q 008548 250 VNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV----LTMGIM-EDVSIIPQPAGDTSMVDLI 324 (562)
Q Consensus 250 I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L----~~lG~F-~~V~i~~~~~~~~g~vdl~ 324 (562)
|++|.|.| + ....++.+++.+.+++|++|+...+++..++| .+.||+ ..|....... .++ +|.
T Consensus 79 i~~i~~~G------~---~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~-~~~--~l~ 146 (235)
T 2x8x_X 79 LRAVQVAG------N---QVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVD-PDG--VVT 146 (235)
T ss_dssp CCEEEEES------C---SSSCHHHHHHHHGGGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEEC-TTS--EEE
T ss_pred EEEEEEEC------C---ccCCHHHHHHHhCccCCCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccC-CCc--EEE
Confidence 99999995 3 35678889999999999999999998888877 468995 5565554433 234 788
Q ss_pred EEEEEcCCceEEE
Q 008548 325 LNVVERPSGGFSA 337 (562)
Q Consensus 325 i~V~E~~~~~~~~ 337 (562)
+.|.|++...+.+
T Consensus 147 ~~v~eG~~~~i~i 159 (235)
T 2x8x_X 147 LQVAEGVVEQVTY 159 (235)
T ss_dssp EEEECCBEEEEEE
T ss_pred EEEEeCceEEEEE
Confidence 9999988543443
No 11
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=97.44 E-value=0.00065 Score=64.09 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=62.2
Q ss_pred EEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHH----HhCCCc-eeeEEeeecCCCCCeeE
Q 008548 248 AEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETV----LTMGIM-EDVSIIPQPAGDTSMVD 322 (562)
Q Consensus 248 g~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L----~~lG~F-~~V~i~~~~~~~~g~vd 322 (562)
++|++|.|.|+. ...++.|++.+.+++|++|+...+++..++| .+.||+ ..|...+..+.+.++++
T Consensus 35 y~i~~I~i~G~~---------~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~ 105 (189)
T 3q6b_A 35 YKLSGVEVSGNL---------AGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVK 105 (189)
T ss_dssp CEEEEEEEEEEC---------TTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEECCC---------cCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCCEEE
Confidence 589999999653 4567889999999999999999998887777 467994 56666544444678999
Q ss_pred EEEEEEEcCCce
Q 008548 323 LILNVVERPSGG 334 (562)
Q Consensus 323 l~i~V~E~~~~~ 334 (562)
|.+.|.|+++..
T Consensus 106 l~~~V~eG~~~~ 117 (189)
T 3q6b_A 106 LRVNVDAGNRFY 117 (189)
T ss_dssp EEEEEECCCCCE
T ss_pred EEEEECCCCeEE
Confidence 999999998643
No 12
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=96.33 E-value=0.11 Score=56.33 Aligned_cols=191 Identities=14% Similarity=0.039 Sum_probs=107.3
Q ss_pred eeeeeeehhhhhcccceeecCccCCHhHHHH---HhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCCceEEEeEEE--ec
Q 008548 163 ELERKYLGTEALTVLKACHANSALTVREVQE---DVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEI--LS 237 (562)
Q Consensus 163 ~l~~~~~e~~~i~~I~~~~GN~~~~~~eL~~---~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY~a~V~~~~~--~~ 237 (562)
.+...+.|-. +..| .|.||...+++.|.. .+.. ++|++|+..+|++.+++|.+. + ..|..... ..
T Consensus 126 ~l~i~v~eG~-i~~I-~i~G~~~~~~~~l~~~~~~~~~--~~G~~~n~~~le~~~~~L~~~----~--~~v~~~~~p~~~ 195 (554)
T 2qdz_A 126 VLKLKVEWGR-IKGW-LIDGKPLEGTRDRMMVFSAMPG--WQDKVLNVFDIDQAIYNINNG----G--KTGNITIVPADE 195 (554)
T ss_dssp EEEEEEECCE-EEEE-EETTEECCSHHHHHHHHHHSTT--CTTCBCCHHHHHHHHHHHCSS----S--EEEEEEEEECSS
T ss_pred EEEEEEEeEE-EEEE-EECCCCccchhhhhhhhhhccc--cCCCcCCHHHHHHHHHHHhcC----c--hhceEEEecCCC
Confidence 3455555554 6778 599999999999988 7775 999999999999999998764 3 44443222 23
Q ss_pred CcE--EEEEEEEEEEeeEEEEecccCCC--CCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCc-eeeEEee
Q 008548 238 GGV--IRLQVAEAEVNNISIRFLDRKTG--EPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIM-EDVSIIP 312 (562)
Q Consensus 238 dg~--l~i~I~Eg~I~~I~i~G~~~~~G--n~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F-~~V~i~~ 312 (562)
++. |.|+|.|.+--.+.+.+++ .| . ..+ |-+ -.+.+..
T Consensus 196 ~g~~~l~v~v~e~~~~~~~~g~~~--~g~g~---~~t--------------------------------g~~~~~~~~~~ 238 (554)
T 2qdz_A 196 YGYSYLDLQLQRRALPRVSLGMDN--SGPGT---PEN--------------------------------GRYKYNASVTA 238 (554)
T ss_dssp TTEEEEEEEEEECCSCEEEEEEEE--CSCSS---SCS--------------------------------SCEEEEEEEEE
T ss_pred CCeeEEEEEEeeCCcEEEEEEEcC--CCCCC---CCc--------------------------------cceEEEEEEEe
Confidence 444 7777778543345554321 01 1 011 111 1122222
Q ss_pred e-cCCCCCeeEEEEEEEE----cCCceEEEeeeecCCCCCCCccceEEEEEEEEec--CCCCCcEEEEEEEEcceeeEEE
Q 008548 313 Q-PAGDTSMVDLILNVVE----RPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRN--VFGRNQKLNISLERGQIDSILR 385 (562)
Q Consensus 313 ~-~~~~~g~vdl~i~V~E----~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~N--lfG~g~~ls~s~~~g~~~~~~~ 385 (562)
. +-...+.+.+.+.+.+ .+.+...++++|+.... ..++.+.+.+...| +.|.+..+ .+......+.
T Consensus 239 ~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~ 311 (554)
T 2qdz_A 239 NDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLG---RTRLDLQTGYSTYRNLLKTRYGQY----QSAGNSRSFG 311 (554)
T ss_dssp ECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEET---TEEEEEEEEEEEEECCCSSSSCCC----CCEEEEEEEE
T ss_pred CCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEe---cCeEEEEEEEeEEEEEccCCcceE----EEEeeEEEEE
Confidence 1 1123456777777765 33455566666664211 13455566666554 54444222 2222345677
Q ss_pred EEEEcCCcCCCCcceEEEEEEE
Q 008548 386 INYIDPWIEGDDKQTSRTMMVQ 407 (562)
Q Consensus 386 lsy~~P~~~~~~~~~s~~~s~~ 407 (562)
+.+..|+......++++++.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~ 333 (554)
T 2qdz_A 312 LKATRLLYRDTRSQFSVYGGLK 333 (554)
T ss_dssp EEEEEEEECCSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCeEEEEEEEEE
Confidence 8888887654444445555443
No 13
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=70.71 E-value=14 Score=34.60 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=52.1
Q ss_pred EeeEEEEecccCCCCCCCC-CCCHHHHHhhc-cccCCCccchHHHHHHHHHHH-hCCCceeeEEeeecCCCCCeeEEEEE
Q 008548 250 VNNISIRFLDRKTGEPTKG-KTRPETILRQL-TTKKGQVYSMLQGKRDVETVL-TMGIMEDVSIIPQPAGDTSMVDLILN 326 (562)
Q Consensus 250 I~~I~i~G~~~~~Gn~~~~-~t~~~~I~r~l-~lk~G~~yn~~~le~~~~~L~-~lG~F~~V~i~~~~~~~~g~vdl~i~ 326 (562)
|.+|.|.| + . .+..+.|+..+ .+..|+.+=.-++++..++|. .+.+.++|.+.-.. |++ |.|.
T Consensus 1 v~~V~V~G------~---~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a~V~r~~---P~~--l~I~ 66 (220)
T 2vh1_A 1 MSKLVLTG------E---RHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQW---PDE--LKIH 66 (220)
T ss_dssp -CEEEEES------C---CSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEEET---TTE--EEEE
T ss_pred CcEEEEeC------C---CccCCHHHHHHHHhhccCCCCeEEECHHHHHHHHHhcCCCEEEEEEEEeC---CCc--eEEE
Confidence 56889995 4 4 57888888888 677766655557777888999 99999999987542 555 5888
Q ss_pred EEEcCC
Q 008548 327 VVERPS 332 (562)
Q Consensus 327 V~E~~~ 332 (562)
|+|+.+
T Consensus 67 V~Er~p 72 (220)
T 2vh1_A 67 LVEYVP 72 (220)
T ss_dssp EEECCE
T ss_pred EEEecc
Confidence 999876
No 14
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=62.10 E-value=14 Score=35.66 Aligned_cols=71 Identities=10% Similarity=0.053 Sum_probs=53.3
Q ss_pred EEeeEEEEecccCCCCCCCCCCCHHHHHhhc-cccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEE
Q 008548 249 EVNNISIRFLDRKTGEPTKGKTRPETILRQL-TTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNV 327 (562)
Q Consensus 249 ~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l-~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V 327 (562)
.|.+|.|.|+. ..+..+.|+..+ .+..|+.+-.-++++..++|.++.++++|.|.-.. |++ |.|.|
T Consensus 27 ~v~~I~V~G~~--------~~vs~~eI~~~~~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a~V~r~~---P~~--L~I~V 93 (255)
T 2vh2_A 27 PLSKLVVTGER--------HYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRKQW---PDE--LKIHL 93 (255)
T ss_dssp CCCEEEEESCC--------SSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEEET---TTE--EEEEE
T ss_pred eEeEEEEECCC--------cccCHHHHHHHHhcccCCCccEEEcHHHHHHHHHcCCCeeEEEEEEEC---CCe--EEEEE
Confidence 78899999532 147888888887 67776655555677778889999999999887643 454 47888
Q ss_pred EEcCC
Q 008548 328 VERPS 332 (562)
Q Consensus 328 ~E~~~ 332 (562)
+|+.+
T Consensus 94 ~Er~P 98 (255)
T 2vh2_A 94 VEYVP 98 (255)
T ss_dssp EECCC
T ss_pred EEeee
Confidence 99876
Done!