Query 008548
Match_columns 562
No_of_seqs 286 out of 2016
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 06:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008548.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008548hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza1 d.224.1.3 (A:242-329) 58.5 2.2 0.00016 32.7 2.2 63 236-308 13-77 (88)
2 d1x2ga1 d.224.1.3 (A:247-337) 58.0 4.8 0.00035 30.9 4.2 56 236-301 13-70 (91)
3 d1t6sa1 a.4.5.60 (A:1-85) Segr 25.1 45 0.0033 24.5 4.9 51 174-231 12-65 (85)
4 d2fnaa1 a.4.5.11 (A:284-356) H 15.2 47 0.0034 24.0 2.7 37 271-307 20-56 (73)
5 d2cc0a1 c.6.2.3 (A:1-192) Acet 14.5 71 0.0052 26.9 4.4 43 188-231 136-183 (192)
6 d2p5ka1 a.4.5.3 (A:2-64) Argin 13.9 58 0.0043 22.7 2.9 40 173-217 8-47 (63)
7 d1ypra_ d.110.1.1 (A:) Profili 10.5 2.3E+02 0.016 21.8 6.1 25 202-226 101-125 (125)
8 d1k1va_ a.37.1.1 (A:) Mafg {Mo 9.6 2E+02 0.014 18.1 4.0 33 186-226 9-41 (41)
9 d1b4aa1 a.4.5.3 (A:4-78) Argin 9.6 77 0.0056 22.8 2.4 36 180-218 11-46 (75)
10 d1eexg_ a.23.2.1 (G:) Diol deh 7.1 2.6E+02 0.019 22.1 4.8 38 184-223 76-113 (137)
No 1
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=58.53 E-value=2.2 Score=32.70 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=42.5
Q ss_pred ecCcE--EEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHhCCCceee
Q 008548 236 LSGGV--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDV 308 (562)
Q Consensus 236 ~~dg~--l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V 308 (562)
.+.|. +.++|..|+|.+|.|.|. -.....|...-..-.|..|+.+.|.+.++.+.-..||.++
T Consensus 13 f~~G~vev~l~V~~G~I~~iki~GD----------ff~~~~i~~le~~L~G~~y~~~~i~~~L~~~~~~~Yf~~i 77 (88)
T d1vqza1 13 FTSGKVEVFANVTESKIQDIKIYGD----------FFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGI 77 (88)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEEES----------CCCSSCTHHHHHHHTTCBSSHHHHHHHHTTSCGGGTSTTC
T ss_pred cCCcEEEEEEEEeCCEEEEEEEEec----------CCCchhHHHHHHHHcCCCCCHHHHHHHHHhCCHHHHhCCC
Confidence 35566 666777899999999973 2222223333334459999999999988877655666544
No 2
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=58.05 E-value=4.8 Score=30.85 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=40.9
Q ss_pred ecCcE--EEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhccccCCCccchHHHHHHHHHHHh
Q 008548 236 LSGGV--IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLT 301 (562)
Q Consensus 236 ~~dg~--l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~ 301 (562)
.+-|. +.++|..|+|.++.|.|. ...+..|...-..-.|-+|+.+.|.+.+..+..
T Consensus 13 F~~G~ve~~l~V~~G~I~~~~i~gD----------fl~~~~i~~le~~L~G~~y~~~~i~~~l~~~~~ 70 (91)
T d1x2ga1 13 FTWGGVELHFDVEKGHITRAQVFTD----------SLNPAPLEALAGRLQGCLYRADMLQQECEALLV 70 (91)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEEEC----------CSCCHHHHHHHHHHTTCBSSHHHHHHHHHHTGG
T ss_pred cCCceEEEEEEEeCCEEEEEEEEcC----------CCCcHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Confidence 35565 667777899999999962 444555655545456999999999988887753
No 3
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=25.10 E-value=45 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=38.8
Q ss_pred hcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHH--CCC-ceEEE
Q 008548 174 LTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYME--HGL-FGLVS 231 (562)
Q Consensus 174 i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~--~GY-~a~V~ 231 (562)
+.++ -|.....++.++|.+.+. ..++.+.+.+.++.|.+.|.+ +|+ ...+.
T Consensus 12 IEAl-LFas~~Pls~~~L~~~l~------~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~ 65 (85)
T d1t6sa1 12 LEAL-IFSSEEPVNLQTLSQITA------HKFTPSELQEAVDELNRDYEATGRTFRIHAIA 65 (85)
T ss_dssp HHHH-HHHCSSCBCHHHHHHHTT------CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHH-HHhcCCCCCHHHHHHHHc------cCCCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3444 367778999999998776 246789999999999999966 676 55553
No 4
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.20 E-value=47 Score=24.02 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=32.6
Q ss_pred CHHHHHhhccccCCCccchHHHHHHHHHHHhCCCcee
Q 008548 271 RPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMED 307 (562)
Q Consensus 271 ~~~~I~r~l~lk~G~~yn~~~le~~~~~L~~lG~F~~ 307 (562)
+=..|++.+..++|...+...+...+++|..+|+.+.
T Consensus 20 rWs~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 56 (73)
T d2fnaa1 20 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 56 (73)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceee
Confidence 3467899999999999999999999999999999753
No 5
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}
Probab=14.52 E-value=71 Score=26.87 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred HhHHHHHhhhhcCCCCcc----cHHHHHHHHHHHHHHHHHCCC-ceEEE
Q 008548 188 VREVQEDVNRIIDGGKII----NIRRLDEVITSINGWYMEHGL-FGLVS 231 (562)
Q Consensus 188 ~~eL~~~l~~~~~~G~~f----~~~~l~~~~~~L~~~Y~~~GY-~a~V~ 231 (562)
.+++.+.+.. +++|.++ ....-.+++..|.++++++|| ++.+.
T Consensus 136 ~~~i~~~v~~-~~~G~IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtls 183 (192)
T d2cc0a1 136 TDAIVQAVSR-LGNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMIS 183 (192)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEEC
T ss_pred HHHHHHHHhc-cCCCeEEEEeCCchhHHHHHHHHHHHHHHCCCEEEEcc
Confidence 3445554543 4666665 122334568999999999999 88775
No 6
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=13.90 E-value=58 Score=22.69 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=31.7
Q ss_pred hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHH
Q 008548 173 ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSI 217 (562)
Q Consensus 173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L 217 (562)
+|..| +..+..-+.+||.+.+. +.|=.++++.+..|+..|
T Consensus 8 ~I~~l--i~~~~i~tQ~eL~~~L~---~~G~~vTQaTlSRDL~eL 47 (63)
T d2p5ka1 8 KIREI--ITSNEIETQDELVDMLK---QDGYKVTQATVSRDIKEL 47 (63)
T ss_dssp HHHHH--HHHSCCCSHHHHHHHHH---HTTCCCCHHHHHHHHHHH
T ss_pred HHHHH--HHhCCCCCHHHHHHHHH---HcCCCeeHHHHHHHHHHh
Confidence 44445 56677778899999998 568889999999998876
No 7
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.53 E-value=2.3e+02 Score=21.81 Aligned_cols=25 Identities=0% Similarity=0.153 Sum_probs=20.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHCCC
Q 008548 202 GKIINIRRLDEVITSINGWYMEHGL 226 (562)
Q Consensus 202 G~~f~~~~l~~~~~~L~~~Y~~~GY 226 (562)
.+...........++|-+++++.||
T Consensus 101 ~~~~~~~~~~~~v~~ladYL~~~GY 125 (125)
T d1ypra_ 101 PPTVQAGEATKIVEQLADYLIGVQY 125 (125)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 5677788888888888888888887
No 8
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.59 E-value=2e+02 Score=18.06 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=22.1
Q ss_pred CCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC
Q 008548 186 LTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL 226 (562)
Q Consensus 186 ~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY 226 (562)
++..||...+.- ++.+++...+++ +.-+.++||
T Consensus 9 ~svReLN~~Lrg-------l~keev~~lKqr-RRTLKNRGY 41 (41)
T d1k1va_ 9 MSVRELNQHLRG-------LSKEEIIQLKQR-RRTLKNRGY 41 (41)
T ss_dssp SCHHHHHHHHTT-------SCHHHHHHHHHH-HHHHTTSCC
T ss_pred CcHHHHHHHHcC-------CCHHHHHHHHHH-HHhhhcCCC
Confidence 355666666653 677887777665 455778887
No 9
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.58 E-value=77 Score=22.84 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=28.5
Q ss_pred eecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHH
Q 008548 180 CHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSIN 218 (562)
Q Consensus 180 ~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~ 218 (562)
+.-+..-+.+||.+.++ +.|=.++++.+..|+..|.
T Consensus 11 i~~~~i~tQ~eL~~~L~---~~Gi~vTQaTlSRDL~eLg 46 (75)
T d1b4aa1 11 IMSNDIETQDELVDRLR---EAGFNVTQATVSRDIKEMQ 46 (75)
T ss_dssp HHHSCCCSHHHHHHHHH---HTTCCCCHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHH---HcCCceeHHHHHHHHHHhC
Confidence 55566668899999998 5688899999988887753
No 10
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=7.14 E-value=2.6e+02 Score=22.11 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred ccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHH
Q 008548 184 SALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYME 223 (562)
Q Consensus 184 ~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~ 223 (562)
+.++++.+.++.+. +.|+.. +.++|.+..+.|.+.|..
T Consensus 76 t~vpD~rvLeiYna-LRP~RS-tk~ELl~iA~eL~~~Y~A 113 (137)
T d1eexg_ 76 TAVPDDRILEIYNA-LRPYRS-TKEELLAIADDLESRYQA 113 (137)
T ss_dssp TTSCHHHHHHHHHH-HSTTSC-CHHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHH-hCCCcc-hHHHHHHHHHHHHHHhCc
Confidence 46789999998886 788887 899999999999888753
Done!