Query 008549
Match_columns 561
No_of_seqs 380 out of 2893
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 13:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7.9E-69 1.7E-73 581.7 38.4 388 4-438 157-544 (727)
2 KOG0501 K+-channel KCNQ [Inorg 100.0 6.3E-61 1.4E-65 487.7 19.2 487 4-552 288-791 (971)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.8E-57 4E-62 458.8 33.9 370 3-442 66-438 (536)
4 PLN03192 Voltage-dependent pot 100.0 3.5E-56 7.5E-61 510.8 39.6 372 3-443 131-502 (823)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.9E-48 6.3E-53 396.8 21.4 354 6-442 302-656 (815)
6 PRK09392 ftrB transcriptional 99.7 5.1E-17 1.1E-21 160.1 15.2 172 302-489 6-180 (236)
7 PRK11161 fumarate/nitrate redu 99.7 8.7E-16 1.9E-20 151.2 15.1 173 305-490 15-192 (235)
8 PRK11753 DNA-binding transcrip 99.7 1.8E-15 4E-20 146.3 17.0 164 312-487 6-173 (211)
9 TIGR03697 NtcA_cyano global ni 99.6 2.4E-14 5.3E-19 136.3 13.3 148 334-491 1-152 (193)
10 COG0664 Crp cAMP-binding prote 99.6 4.1E-14 8.9E-19 136.2 15.0 174 306-491 3-180 (214)
11 PRK09391 fixK transcriptional 99.5 3.1E-13 6.8E-18 132.6 13.5 152 321-491 33-188 (230)
12 PRK10402 DNA-binding transcrip 99.5 3.2E-13 6.9E-18 132.2 13.3 134 320-465 25-162 (226)
13 KOG3713 Voltage-gated K+ chann 99.5 2.3E-13 5.1E-18 140.5 11.2 64 181-244 380-443 (477)
14 PRK13918 CRP/FNR family transc 99.4 7.9E-13 1.7E-17 126.9 12.6 148 325-491 5-158 (202)
15 cd00038 CAP_ED effector domain 99.4 1.4E-12 3E-17 111.9 12.9 113 310-434 1-114 (115)
16 PF00027 cNMP_binding: Cyclic 99.4 3E-12 6.6E-17 105.7 10.4 90 329-429 2-91 (91)
17 smart00100 cNMP Cyclic nucleot 99.3 2.2E-11 4.7E-16 104.9 14.0 116 310-435 1-117 (120)
18 COG2905 Predicted signal-trans 99.3 1.6E-11 3.4E-16 128.5 14.4 128 302-444 6-133 (610)
19 PLN02868 acyl-CoA thioesterase 99.2 5.5E-11 1.2E-15 126.8 13.6 113 302-428 7-119 (413)
20 PF00520 Ion_trans: Ion transp 99.2 2.5E-11 5.5E-16 115.1 9.9 168 6-227 26-200 (200)
21 KOG0614 cGMP-dependent protein 99.2 1.1E-11 2.5E-16 127.7 7.4 124 298-431 267-391 (732)
22 KOG1113 cAMP-dependent protein 99.2 4.8E-11 1E-15 118.3 7.0 111 302-428 121-231 (368)
23 KOG1545 Voltage-gated shaker-l 99.2 3.6E-12 7.8E-17 125.5 -0.9 48 180-227 395-442 (507)
24 KOG0614 cGMP-dependent protein 99.1 2.8E-11 6.1E-16 124.9 5.1 116 296-427 147-262 (732)
25 PF07885 Ion_trans_2: Ion chan 99.1 3.7E-10 8E-15 91.4 8.8 55 178-232 24-78 (79)
26 KOG1419 Voltage-gated K+ chann 99.0 2.6E-09 5.7E-14 111.1 10.3 91 174-271 265-355 (654)
27 KOG1113 cAMP-dependent protein 98.9 3.1E-09 6.8E-14 105.6 6.6 114 298-426 235-348 (368)
28 KOG4390 Voltage-gated A-type K 98.6 2.8E-09 6E-14 106.2 -3.4 57 178-234 356-416 (632)
29 PRK10537 voltage-gated potassi 98.3 5.1E-06 1.1E-10 87.5 12.9 54 178-231 168-221 (393)
30 KOG2968 Predicted esterase of 98.2 2.3E-06 5E-11 94.0 6.8 113 318-442 500-613 (1158)
31 KOG3684 Ca2+-activated K+ chan 98.2 4.8E-05 1E-09 78.5 14.9 92 175-274 284-375 (489)
32 KOG1420 Ca2+-activated K+ chan 98.0 4.1E-06 8.8E-11 87.7 3.7 129 175-313 285-418 (1103)
33 PF01007 IRK: Inward rectifier 97.8 6.3E-05 1.4E-09 77.3 9.1 55 177-231 83-139 (336)
34 PF04831 Popeye: Popeye protei 97.8 0.00063 1.4E-08 60.6 13.1 124 313-447 14-139 (153)
35 KOG2968 Predicted esterase of 97.6 0.00052 1.1E-08 76.1 12.7 117 322-444 111-229 (1158)
36 KOG1418 Tandem pore domain K+ 97.6 6.6E-05 1.4E-09 80.1 5.8 59 178-236 115-173 (433)
37 PRK11832 putative DNA-binding 97.3 0.0049 1.1E-07 58.6 13.7 108 318-440 14-122 (207)
38 KOG4404 Tandem pore domain K+ 96.7 0.0086 1.9E-07 59.7 8.8 58 179-236 187-252 (350)
39 KOG3542 cAMP-regulated guanine 96.3 0.012 2.6E-07 63.5 8.0 110 301-426 279-390 (1283)
40 KOG3827 Inward rectifier K+ ch 95.7 0.033 7.2E-07 56.9 7.5 56 178-233 112-169 (400)
41 KOG4404 Tandem pore domain K+ 95.6 0.0026 5.5E-08 63.3 -0.6 50 178-227 80-129 (350)
42 KOG1418 Tandem pore domain K+ 94.6 0.0059 1.3E-07 65.1 -1.5 48 177-224 241-296 (433)
43 KOG3542 cAMP-regulated guanine 94.1 0.073 1.6E-06 57.7 5.3 91 303-417 37-127 (1283)
44 PLN03223 Polycystin cation cha 93.5 6.3 0.00014 47.1 19.5 18 5-22 1207-1224(1634)
45 KOG3193 K+ channel subunit [In 91.2 0.13 2.8E-06 54.6 2.3 27 180-206 219-245 (1087)
46 KOG2302 T-type voltage-gated C 88.1 9.4 0.0002 44.1 13.6 14 6-19 1187-1200(1956)
47 COG4709 Predicted membrane pro 83.7 4.3 9.2E-05 37.8 7.1 71 245-317 7-81 (195)
48 KOG0498 K+-channel ERG and rel 82.9 48 0.001 38.0 16.3 65 287-356 372-460 (727)
49 KOG2301 Voltage-gated Ca2+ cha 80.0 15 0.00032 45.6 11.8 73 188-260 1060-1142(1592)
50 PF08006 DUF1700: Protein of u 78.4 8.5 0.00019 36.0 7.5 54 245-300 7-64 (181)
51 PF00060 Lig_chan: Ligand-gate 77.7 2 4.4E-05 38.2 3.0 76 174-255 40-115 (148)
52 PF07883 Cupin_2: Cupin domain 74.2 5.6 0.00012 30.3 4.3 45 329-381 3-48 (71)
53 PRK13290 ectC L-ectoine syntha 73.3 18 0.0004 31.7 7.7 51 327-383 38-88 (125)
54 TIGR03037 anthran_nbaC 3-hydro 68.4 14 0.0003 33.8 6.0 74 326-418 29-104 (159)
55 KOG2301 Voltage-gated Ca2+ cha 66.1 24 0.00052 43.9 9.1 22 5-27 499-520 (1592)
56 PF00520 Ion_trans: Ion transp 64.0 95 0.0021 28.3 11.2 56 172-227 135-195 (200)
57 PLN03192 Voltage-dependent pot 63.0 3.1E+02 0.0067 32.2 18.9 40 287-326 328-371 (823)
58 PF05899 Cupin_3: Protein of u 59.4 13 0.00028 29.2 3.6 42 331-381 14-55 (74)
59 COG0662 {ManC} Mannose-6-phosp 57.3 28 0.00061 30.4 5.8 50 324-381 36-86 (127)
60 PRK13264 3-hydroxyanthranilate 54.9 22 0.00049 33.0 4.8 69 332-419 42-111 (177)
61 COG1917 Uncharacterized conser 49.9 38 0.00082 29.6 5.5 50 326-383 45-95 (131)
62 PF13314 DUF4083: Domain of un 49.6 41 0.00089 25.0 4.5 41 211-254 14-57 (58)
63 PF14377 DUF4414: Domain of un 45.9 37 0.00079 28.9 4.5 44 256-299 52-105 (108)
64 KOG3676 Ca2+-permeable cation 45.3 81 0.0018 36.0 8.1 81 183-264 591-680 (782)
65 PF10011 DUF2254: Predicted me 38.5 1.4E+02 0.003 31.5 8.4 60 174-233 96-155 (371)
66 PF08016 PKD_channel: Polycyst 38.4 2.5E+02 0.0054 30.0 10.6 17 6-22 237-253 (425)
67 KOG1054 Glutamate-gated AMPA-t 36.5 45 0.00098 36.6 4.3 73 180-258 597-669 (897)
68 smart00835 Cupin_1 Cupin. This 35.4 89 0.0019 27.8 5.6 56 325-383 31-88 (146)
69 KOG4440 NMDA selective glutama 34.2 90 0.0019 34.6 6.1 53 179-231 614-666 (993)
70 KOG3599 Ca2+-modulated nonsele 33.6 8.4E+02 0.018 28.6 16.5 16 7-22 494-509 (798)
71 PF07697 7TMR-HDED: 7TM-HD ext 31.9 2E+02 0.0042 27.3 7.8 58 287-345 147-207 (222)
72 PRK11171 hypothetical protein; 29.2 1.4E+02 0.003 29.8 6.4 50 325-382 185-235 (266)
73 PF07077 DUF1345: Protein of u 28.4 1.1E+02 0.0025 28.6 5.2 49 177-225 131-179 (180)
74 PRK06771 hypothetical protein; 27.0 3.2E+02 0.0069 22.6 6.7 40 218-257 12-51 (93)
75 PRK09108 type III secretion sy 26.5 3E+02 0.0065 28.8 8.4 69 199-267 173-241 (353)
76 TIGR02272 gentisate_1_2 gentis 26.3 2.1E+02 0.0045 29.7 7.1 74 329-424 255-328 (335)
77 COG3837 Uncharacterized conser 25.9 97 0.0021 28.2 4.0 36 340-383 60-95 (161)
78 PRK11171 hypothetical protein; 24.7 1.6E+02 0.0035 29.4 5.8 48 327-382 64-113 (266)
79 PF12973 Cupin_7: ChrR Cupin-l 24.3 1.4E+02 0.003 24.2 4.5 64 325-414 25-88 (91)
80 PF02037 SAP: SAP domain; Int 24.2 64 0.0014 21.3 1.9 25 245-269 6-35 (35)
81 PF14377 DUF4414: Domain of un 23.9 2E+02 0.0043 24.4 5.4 48 256-303 8-68 (108)
82 PRK04190 glucose-6-phosphate i 23.9 3.2E+02 0.007 25.8 7.4 51 327-381 71-131 (191)
83 KOG1053 Glutamate-gated NMDA-t 23.7 7.4E+02 0.016 29.3 11.0 50 182-233 615-664 (1258)
84 PHA02909 hypothetical protein; 23.0 1.9E+02 0.0041 21.3 4.2 18 91-108 44-61 (72)
85 KOG0500 Cyclic nucleotide-gate 22.9 1E+03 0.022 26.0 13.9 85 262-365 249-359 (536)
86 PF01050 MannoseP_isomer: Mann 22.8 2E+02 0.0044 26.1 5.6 48 325-380 64-112 (151)
87 PRK12721 secretion system appa 22.1 4.1E+02 0.0089 27.7 8.4 68 200-267 172-239 (349)
88 PF11699 CENP-C_C: Mif2/CENP-C 22.1 1.4E+02 0.0031 24.2 4.0 30 345-382 34-63 (85)
89 PRK12468 flhB flagellar biosyn 21.3 4.3E+02 0.0093 28.0 8.4 67 200-266 179-245 (386)
90 TIGR03404 bicupin_oxalic bicup 20.8 2.1E+02 0.0046 30.1 6.0 53 326-382 69-122 (367)
91 KOG3609 Receptor-activated Ca2 20.7 7E+02 0.015 29.1 10.2 18 6-23 411-428 (822)
92 COG5559 Uncharacterized conser 20.2 1.2E+02 0.0025 22.7 2.7 21 255-275 9-29 (65)
93 KOG2378 cAMP-regulated guanine 20.0 1.1E+02 0.0023 32.8 3.5 43 376-427 1-44 (573)
94 TIGR00933 2a38 potassium uptak 20.0 1.3E+02 0.0027 31.9 4.2 43 177-219 230-274 (390)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7.9e-69 Score=581.70 Aligned_cols=388 Identities=33% Similarity=0.544 Sum_probs=338.5
Q ss_pred cccccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHH
Q 008549 4 YYSQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWV 83 (561)
Q Consensus 4 ~~~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~~ 83 (561)
|=.||+| +||++|++|++|+++++.|..+ ...........|..+..++|++||.|++++++.+.+..+...++.|.
T Consensus 157 IA~rYl~-twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa 232 (727)
T KOG0498|consen 157 IAKRYLK-TWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWA 232 (727)
T ss_pred HHHHHHh-hhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 4568999 7999999999999999887654 11111222224445666777999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCcccccccc
Q 008549 84 KIAVNLYLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFGIFHG 163 (561)
Q Consensus 84 ~~~~~ll~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~ 163 (561)
+++.+|++|++++||+||+||++|.++...||.+ .+|+...+...+..+..|+||.
T Consensus 233 ~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~---------------------~tw~~~l~~~~~~~~~~~~fg~--- 288 (727)
T KOG0498|consen 233 GAALLLSVYLLASHWAGCIWYLIAIERPASCPRK---------------------ATWLGSLGRLLSCYNLSFTFGI--- 288 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc---------------------cccccccccccccCcccccccc---
Confidence 9778999999999999999999998776666553 1677653211112334466764
Q ss_pred ccccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Q 008549 164 ALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTV 243 (561)
Q Consensus 164 ~~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~ 243 (561)
.+++.+|++|+||+++||||+||||++|+|..|++|+|++|++|.++||++||||++++++.+++..+|+.
T Consensus 289 ---------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~ 359 (727)
T KOG0498|consen 289 ---------YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRD 359 (727)
T ss_pred ---------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHH
Confidence 47778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHh
Q 008549 244 KPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALC 323 (561)
Q Consensus 244 ~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~ 323 (561)
++.++++||++++||+.|++||++|++|.|..++|++++++|+.||+.||.+|+.++|.++++++|+|++++++.+++|+
T Consensus 360 k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~ 439 (727)
T KOG0498|consen 360 KMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALC 439 (727)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccce
Q 008549 324 DCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKT 403 (561)
Q Consensus 324 ~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~t 403 (561)
.++++..|+|||+|++|||+.+.||||++|.+++...++|.+ .....+++||+|||.-+.++++ .|+++|
T Consensus 440 ~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~---~~~~~L~~Gd~~GeEl~~~~~~-------~p~t~T 509 (727)
T KOG0498|consen 440 SRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF---FVVAILGPGDFFGEELLTWCLD-------LPQTRT 509 (727)
T ss_pred HHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce---EEEEEecCCCccchHHHHHHhc-------CCCCce
Confidence 999999999999999999999999999999999998876644 4568999999999543335543 256889
Q ss_pred EEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHH
Q 008549 404 IEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 438 (561)
Q Consensus 404 v~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~ 438 (561)
|+|+|.|+++.|++++|..+++++|.++..+.+..
T Consensus 510 Vralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~ 544 (727)
T KOG0498|consen 510 VRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHT 544 (727)
T ss_pred eehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhH
Confidence 99999999999999999999999998887777743
No 2
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-61 Score=487.74 Aligned_cols=487 Identities=17% Similarity=0.188 Sum_probs=380.0
Q ss_pred cccccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHH
Q 008549 4 YYSQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWV 83 (561)
Q Consensus 4 ~~~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~~ 83 (561)
|-.||+| +||++|++||+|+|++..+...++ .+..++..|+ +.||+|+.|+.|+++++.+ +
T Consensus 288 IRmNYlK-sWFvIDLLSCLPYDi~naF~~~de----gI~SLFSaLK-------VVRLLRLGRVaRKLD~YlE-------Y 348 (971)
T KOG0501|consen 288 IRMNYLK-SWFVIDLLSCLPYDIFNAFERDDE----GIGSLFSALK-------VVRLLRLGRVARKLDHYLE-------Y 348 (971)
T ss_pred HhHHHHH-HHHHHHHHhcccHHHHHHhhcccc----cHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-------h
Confidence 4468999 699999999999999988665543 1334455555 8899999999999998765 2
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHhHhh-HHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCcccc
Q 008549 84 KI---AVNLYLYLQAANVFGGLWYFMAI-ERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFG 159 (561)
Q Consensus 84 ~~---~~~ll~~~l~~H~~aC~w~~i~~-~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g 159 (561)
++ ++++++|++++||+||+||.+|- |..++ .++....++|+..... +.++.|+|.
T Consensus 349 GAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~------------------~~n~i~~dsWL~kLa~---~~~tpY~~~ 407 (971)
T KOG0501|consen 349 GAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDE------------------MDNTIQPDSWLWKLAN---DIGTPYNYN 407 (971)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeccchheecc------------------cccccccchHHHHHHh---hcCCCceec
Confidence 44 33455788999999999999993 32221 0122556799987765 567777765
Q ss_pred ccccccccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008549 160 IFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLK 239 (561)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~ 239 (561)
.-.... .+.+++.-+.|+.|+||.++.|||||+|+|.|.|+.|++|++++|++|.++||.|+|+++.|++++.+.+.
T Consensus 408 ~s~~~~---~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~ 484 (971)
T KOG0501|consen 408 LSNKGT---LVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTN 484 (971)
T ss_pred cCCCce---eecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhH
Confidence 221111 23577888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHH
Q 008549 240 EMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETL 319 (561)
Q Consensus 240 ~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l 319 (561)
.|+++++.+.+||+-+.+|++|.+||.+|.--.|...+|+|.+++|.-+|..+|++|+.+++++.+...|.|+-.++..+
T Consensus 485 rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCL 564 (971)
T KOG0501|consen 485 RYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCL 564 (971)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCcccccc
Q 008549 320 DALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSK 399 (561)
Q Consensus 320 ~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~ 399 (561)
+.|+..++..+..|||.|++.||..+.++||++|.++|...| ++ +.+++.||+||+.....+ ....
T Consensus 565 RaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD---EV----VAILGKGDVFGD~FWK~~-------t~~q 630 (971)
T KOG0501|consen 565 RALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD---EV----VAILGKGDVFGDEFWKEN-------TLGQ 630 (971)
T ss_pred HHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC---cE----EEEeecCccchhHHhhhh-------hhhh
Confidence 999999999999999999999999999999999999999754 23 389999999999854211 2235
Q ss_pred ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHH------HHHHHHhCCCCCCCCCchhhHhhhhhhCCCCC
Q 008549 400 STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRH------YTRRKFRFPKRRPSPLYVPLRDKVKEKTPIPQ 473 (561)
Q Consensus 400 ~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~------~~~r~~~~~~~~~~er~~~~~~~~~~~~~~~~ 473 (561)
+.++|+|+++|.+..|.++.+.++|+-|..|+.-|.+.+..- +.-|+.....++.|++ ...+...+..+|+
T Consensus 631 s~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~LTyNLr~RiiFRKvaDVKrEkE~~---~krKNE~~L~lp~ 707 (971)
T KOG0501|consen 631 SAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTLTYNLRHRIIFRKVADVKREKELR---AKRKNEPKLTLPN 707 (971)
T ss_pred hhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceeeEeeccceeeeeehhhhhhhHHHH---HhhcCCCCCCCCC
Confidence 788999999999999999999999999999999988876432 2334444444444433 3333444455565
Q ss_pred CCcceec-cCCCCCCccc-ccCCC---CCCCcccCcCCCCccccccccCCCccccc--cccCCCCCCCCCccCCCCCCCc
Q 008549 474 RSKVKEK-TPLPQQDKVK-VMTPV---PQRSKVKEKTPVPQRSKVKEKTPVPQQSK--VNEKTPLPQRGKVNKRTLPPKR 546 (561)
Q Consensus 474 ~~~v~~~-~plt~~d~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 546 (561)
...|+-- ....||...- ...|+ ..+.+.+..++..+.+...+..+.-++++ ..+...++..+.+.. .++.|
T Consensus 708 DHpvRklf~rfr~~~~~r~~~~~~~g~~~~~dl~~~~~~~~~~~~~~~~~~~~~s~~t~~~s~~~~~~~~~~~--~~~~~ 785 (971)
T KOG0501|consen 708 DHPVRKLFQRFRQQKEPRIFPSPMFGDIEKGDLKKETGIVRISSLHSMISEVGASQSTYVKSPRSKVKRPPLS--KRQTR 785 (971)
T ss_pred CchHHHHHHHHhhccccccCcccccCCccccchhcccceeeecccccCcccccccceeeecCCCCccCCCccc--cCCCc
Confidence 5554211 1111111111 11122 33444666677778888888888877774 566666666666555 66666
Q ss_pred ceeeee
Q 008549 547 FSVKIK 552 (561)
Q Consensus 547 ~~~~~~ 552 (561)
|+-+++
T Consensus 786 D~~~l~ 791 (971)
T KOG0501|consen 786 DEDALS 791 (971)
T ss_pred chHhhc
Confidence 665443
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-57 Score=458.85 Aligned_cols=370 Identities=19% Similarity=0.254 Sum_probs=312.5
Q ss_pred ccccccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhH
Q 008549 3 NYYSQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKW 82 (561)
Q Consensus 3 ~~~~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~ 82 (561)
..+.||+.+..|.+|++|++|+|++..+.. ...+.| +.||+|++|++..+.+.+. ++++
T Consensus 66 Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~-----------~~~~~r-------~nRllk~yRl~~F~~rTet---rT~~ 124 (536)
T KOG0500|consen 66 KLRKHYVHSTQFKLDVLSLIPLDLLLFKDG-----------SASLER-------LNRLLKIYRLFEFFDRTET---RTTY 124 (536)
T ss_pred HHHHHHHHhhhhhhhhhhhcchhHHhhcCC-----------cchHHH-------HHHHHHHHHHHHHHHHhcc---ccCC
Confidence 357899999999999999999999876421 112444 6677778888877776554 3333
Q ss_pred HHH--HHHHHHH-HHHHHHHHHHHHhHhhHHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCcccc
Q 008549 83 VKI--AVNLYLY-LQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFG 159 (561)
Q Consensus 83 ~~~--~~~ll~~-~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g 159 (561)
+++ +.+|+.+ ++++||+||+||+++.. .| .+.++|.+.... +..++
T Consensus 125 Pn~fri~~lv~~~~ilfHWNaClYf~iS~~-------------~g-----------~~~d~wvY~~i~-------d~~~~ 173 (536)
T KOG0500|consen 125 PNAFRISKLVHYCLILFHWNACLYFLISKA-------------IG-----------FTTDDWVYPKIN-------DPEFA 173 (536)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhhHh-------------cC-----------ccccccccCCcc-------Ccccc
Confidence 333 5566654 46899999999999952 22 556779975321 11121
Q ss_pred ccccccccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 008549 160 IFHGALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLK 239 (561)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~ 239 (561)
.....++..+|+.|+||+..||||+|.- ..|.|+.|++|.|+-.++|+++||.|+|+++++++++++.+.
T Consensus 174 ---------~c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~ 243 (536)
T KOG0500|consen 174 ---------TCDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAART 243 (536)
T ss_pred ---------ccchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHH
Confidence 1123468899999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHhcchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHH
Q 008549 240 EMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETL 319 (561)
Q Consensus 240 ~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l 319 (561)
+|+.+|+.+++||+.+++|+.++.||.+||+|.|.+++..+++++++.||+.|+.+|+.+++.+.|+++++|+++.+.++
T Consensus 244 EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL 323 (536)
T KOG0500|consen 244 EFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLL 323 (536)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCcccccc
Q 008549 320 DALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSK 399 (561)
Q Consensus 320 ~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~ 399 (561)
.+++..++++.|.|||+|+++||.+.+||+|.+|.+.|...|++.. ...+.+|++|||+++++ +.+ ..+...
T Consensus 324 ~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~-----~~~L~~G~~FGEisIln-i~g--~~~gNR 395 (536)
T KOG0500|consen 324 VELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV-----FVTLKAGSVFGEISILN-IKG--NKNGNR 395 (536)
T ss_pred HHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE-----EEEecCCceeeeeEEEE-EcC--cccCCc
Confidence 9999999999999999999999999999999999999998665443 37899999999998742 232 223447
Q ss_pred ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 400 STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 400 ~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
|+++++++.++++++++++|+.+++++||+....+.+...+-+
T Consensus 396 RtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~kgr~iL 438 (536)
T KOG0500|consen 396 RTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEKGRQIL 438 (536)
T ss_pred ceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988877776544433
No 4
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3.5e-56 Score=510.81 Aligned_cols=372 Identities=17% Similarity=0.264 Sum_probs=304.4
Q ss_pred ccccccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhH
Q 008549 3 NYYSQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKW 82 (561)
Q Consensus 3 ~~~~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~ 82 (561)
.|..||+| +||++|++|++|++++..+.. . ........++||+++ +.|+.|+.+++..+++... ....|
T Consensus 131 ~I~~~Yl~-~~f~~Dlis~lP~~~i~~~~~-~---~~~~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~--~~~~~ 199 (823)
T PLN03192 131 KIAVRYLS-TWFLMDVASTIPFQALAYLIT-G---TVKLNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIR--FSYFW 199 (823)
T ss_pred HHHHHHHH-HhHHHHHHHHhHHHHHHHHhc-C---CccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hHHHH
Confidence 46789998 699999999999998754321 1 111112233444221 4455555555555443222 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCccccccc
Q 008549 83 VKIAVNLYLYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFGIFH 162 (561)
Q Consensus 83 ~~~~~~ll~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~ 162 (561)
...+..+++.++++||+||+||+++... . ....+|+..... ++
T Consensus 200 ~~~~kli~~~l~~~H~~aC~~y~i~~~~------------~------------~~~~~Wi~~~~~---------~~---- 242 (823)
T PLN03192 200 IRCARLLSVTLFLVHCAGCLYYLIADRY------------P------------HQGKTWIGAVIP---------NF---- 242 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc------------C------------CCCCchHHHhhh---------cc----
Confidence 3333333344568999999999998310 0 234689864221 11
Q ss_pred cccccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 008549 163 GALESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMT 242 (561)
Q Consensus 163 ~~~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~ 242 (561)
.+.+++.+|+.|+|||++|||||||||++|.|..|++|++++|++|++++||++|++++++.+.+.+..+|+
T Consensus 243 --------~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~ 314 (823)
T PLN03192 243 --------RETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFR 314 (823)
T ss_pred --------ccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHH
Q 008549 243 VKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDAL 322 (561)
Q Consensus 243 ~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L 322 (561)
++|+.+++||+.++||++||.||++||++.|+. ++.+++++++.||+.||.++..+++.+.++++++|++++++++.+|
T Consensus 315 ~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L 393 (823)
T PLN03192 315 NSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLL 393 (823)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHH
Confidence 999999999999999999999999999999975 4688999999999999999999999999999999999999999999
Q ss_pred hhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccc
Q 008549 323 CDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTK 402 (561)
Q Consensus 323 ~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~ 402 (561)
+..++.+.|+|||.|+.+||.++.+|||++|.|+++..+++++ .++..+++|++|||.+++ . ..++++
T Consensus 394 ~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e---~~l~~l~~Gd~FGE~~~l---~------~~p~~~ 461 (823)
T PLN03192 394 VTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKE---RVVGTLGCGDIFGEVGAL---C------CRPQSF 461 (823)
T ss_pred HHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcc---eeeEEccCCCEecchHHh---c------CCCCCC
Confidence 9999999999999999999999999999999999987665555 346889999999999763 2 237899
Q ss_pred eEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 008549 403 TIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 443 (561)
Q Consensus 403 tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 443 (561)
+++|.++|+++.|++++|.++++++|+....+++.+.++.+
T Consensus 462 t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~ 502 (823)
T PLN03192 462 TFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHK 502 (823)
T ss_pred eEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988888777653
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-48 Score=396.81 Aligned_cols=354 Identities=14% Similarity=0.210 Sum_probs=298.8
Q ss_pred cccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHH
Q 008549 6 SQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWVKI 85 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~~~~ 85 (561)
.||+++.-|=+|++|++|++++++++... -++| ++|++++..++......... ..+.++..
T Consensus 302 k~Yl~sr~FklDllsiLPldllY~~~G~~-----------p~wR-------~~R~lK~~sF~e~~~~Le~i-~s~~y~~R 362 (815)
T KOG0499|consen 302 KHYLTSRKFKLDLLSILPLDLLYLFFGFN-----------PMWR-------ANRMLKYTSFFEFNHHLESI-MSKAYIYR 362 (815)
T ss_pred HHHHHhhhhhhhHHhhhhHHHHHHHhccc-----------hhhh-------hhhHHHHHHHHHHHHHHHHH-hcchhhhh
Confidence 58999999999999999999998754321 1334 44444443333222222222 22233334
Q ss_pred HHHHHHHH-HHHHHHHHHHHhHhhHHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCccccccccc
Q 008549 86 AVNLYLYL-QAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFGIFHGA 164 (561)
Q Consensus 86 ~~~ll~~~-l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~ 164 (561)
+.+-+.|| .++|+.||+||..+- ++| .+.+-|.++.-
T Consensus 363 V~rT~~YmlyilHinacvYY~~Sa-------------yqg-----------lG~~rWVydg~------------------ 400 (815)
T KOG0499|consen 363 VIRTTGYLLYILHINACVYYWASA-------------YQG-----------LGTTRWVYDGE------------------ 400 (815)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHh-------------hcc-----------cccceeEEcCC------------------
Confidence 45555666 589999999998873 333 55677885311
Q ss_pred cccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 008549 165 LESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVK 244 (561)
Q Consensus 165 ~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~ 244 (561)
...|++|+|||+-|++|+| |...|.|..|++|..+--+.|+++||.+||.|-.++...+.++++|++.
T Consensus 401 -----------Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~ 468 (815)
T KOG0499|consen 401 -----------GNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRAC 468 (815)
T ss_pred -----------CCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 1469999999999999999 5688999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhh
Q 008549 245 PREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCD 324 (561)
Q Consensus 245 ~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~ 324 (561)
|+.--.||+..+||+++|.||+.+|+|.|..++.+|+++++..||..||.+++..++..+|.++.+|++++...+..++.
T Consensus 469 mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmll 548 (815)
T KOG0499|consen 469 MDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLL 548 (815)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceE
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 404 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv 404 (561)
.++...|-|||+|++.||++.+||||..|.|.|....+|..+ +..+.+|++|||++|+. ..+..+|+++|
T Consensus 549 rLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~V----l~tL~~GsVFGEISLLa------igG~nRRTAnV 618 (815)
T KOG0499|consen 549 RLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKV----LVTLKAGSVFGEISLLA------IGGGNRRTANV 618 (815)
T ss_pred HhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEE----EEEecccceeeeeeeee------ecCCCccchhh
Confidence 999999999999999999999999999999999976666654 48999999999998852 22334899999
Q ss_pred EEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 405 EALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 405 ~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
+|...|.+++++++|+.+++..||+-...+.+.+.+.+
T Consensus 619 ~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~ll 656 (815)
T KOG0499|consen 619 VAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLL 656 (815)
T ss_pred hhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877766555
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.73 E-value=5.1e-17 Score=160.14 Aligned_cols=172 Identities=14% Similarity=0.068 Sum_probs=142.0
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.+.++.+++|+.+++++++.+....+.+.|++|+.|+++|+.++++|+|++|.|+++...+|++ .++.++++|++||
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~---~~i~~~~~g~~~g 82 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRE---TTLAILRPVSTFI 82 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCce---EEEEEeCCCchhh
Confidence 4578999999999999999999999999999999999999999999999999999987655555 3578999999999
Q ss_pred ccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCc
Q 008549 382 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLY 458 (561)
Q Consensus 382 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~ 458 (561)
+.++ +. ..++.++++|+++|+++.|++++|.+++.++|.+...+...+..++ .++.......++.+|+
T Consensus 83 ~~~~---~~------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl 153 (236)
T PRK09392 83 LAAV---VL------DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERL 153 (236)
T ss_pred hHHH---hC------CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 9865 22 2368889999999999999999999999999999999988877766 3455567778889999
Q ss_pred hhhHhhhhhhCCCCCCCcceeccCCCCCCcc
Q 008549 459 VPLRDKVKEKTPIPQRSKVKEKTPLPQQDKV 489 (561)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~ 489 (561)
+.++.......+ .+..+..|++|+|--
T Consensus 154 a~~Ll~~~~~~~----~~~~~~i~~t~~~iA 180 (236)
T PRK09392 154 ANYLLKQSLRQG----GADVVTLPYEKRVLA 180 (236)
T ss_pred HHHHHHhccccC----CCcEEEeeCCHHHHH
Confidence 888776655432 233455666665543
No 7
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.67 E-value=8.7e-16 Score=151.21 Aligned_cols=173 Identities=11% Similarity=0.118 Sum_probs=140.3
Q ss_pred HhhCcccccCCHHHHHHHhhccee-eeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEec
Q 008549 305 LKKVHEFRMLKEETLDALCDCVKP-TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 305 L~~i~lF~~l~~~~l~~L~~~~~~-~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+++.+.|..+++++++.|...... +.|+||+.|+.+||.++++|+|.+|.|+++..+ +|++ .++.++.+|++||+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e---~i~~~~~~gd~~g~ 91 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDE---QITGFHLAGDLVGF 91 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCE---EEEEeccCCceecc
Confidence 455556667999999999988864 679999999999999999999999999999764 4665 34678899999998
Q ss_pred cchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCch
Q 008549 383 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYV 459 (561)
Q Consensus 383 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~ 459 (561)
..+ +. ..++.+++|+++|+++.|++++|.+++.++|++...+.+.+..+. .++.......++++|++
T Consensus 92 ~~~---~~-------~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rla 161 (235)
T PRK11161 92 DAI---GS-------GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILLLSKKNAEERLA 161 (235)
T ss_pred ccc---cC-------CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 643 11 134568999999999999999999999999999999888887766 34555677788999999
Q ss_pred hhHhhhhhhCCCCCCCcceeccCCCCCCccc
Q 008549 460 PLRDKVKEKTPIPQRSKVKEKTPLPQQDKVK 490 (561)
Q Consensus 460 ~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~ 490 (561)
.++.++.+..+.+...+..+..|+||++--+
T Consensus 162 ~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~ 192 (235)
T PRK11161 162 AFIYNLSRRFAQRGFSPREFRLTMTRGDIGN 192 (235)
T ss_pred HHHHHHHHHHhhcCCCCceeEccccHHHHHH
Confidence 9998888877765555556778888876443
No 8
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.67 E-value=1.8e-15 Score=146.25 Aligned_cols=164 Identities=10% Similarity=0.096 Sum_probs=131.8
Q ss_pred ccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhc
Q 008549 312 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALR 390 (561)
Q Consensus 312 ~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~ 390 (561)
+.+++++++.++..++.+.|++|++|+.+|++++++|||++|.++++..+ +|++ ..+..+++|++||+..++ .
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~---~~~~~~~~g~~~g~~~~~---~ 79 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF---E 79 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEEeehhhc---c
Confidence 56899999999999999999999999999999999999999999998654 4555 346889999999998652 1
Q ss_pred ccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhhh
Q 008549 391 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVKE 467 (561)
Q Consensus 391 ~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~~ 467 (561)
...+++.+++|.++|+++.|++++|.+++.++|++...+++.+.+++ .++.......++.+|++.++..+..
T Consensus 80 -----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~ 154 (211)
T PRK11753 80 -----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAK 154 (211)
T ss_pred -----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 11256778999999999999999999999999999988887776666 3345567778889999888777776
Q ss_pred hCCCCCCCcceeccCCCCCC
Q 008549 468 KTPIPQRSKVKEKTPLPQQD 487 (561)
Q Consensus 468 ~~~~~~~~~v~~~~plt~~d 487 (561)
.++..+... ....|+|++|
T Consensus 155 ~~~~~~~~~-~~~~~~t~~~ 173 (211)
T PRK11753 155 QPDAMTHPD-GMQIKITRQE 173 (211)
T ss_pred hcCCcCCCC-ceecCCCHHH
Confidence 655432221 2345677665
No 9
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.57 E-value=2.4e-14 Score=136.31 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=121.2
Q ss_pred CcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeE
Q 008549 334 HAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEA 412 (561)
Q Consensus 334 ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~l 412 (561)
|+.|+.+||+++++|+|.+|.|+++..+ +|++ .++.++++|++||+.+++ .+. ..++..+++|.++|++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e---~~l~~~~~g~~~G~~~~~---~~~----~~~~~~~~~A~~~~~v 70 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEE---ITVALLRENSVFGVLSLI---TGH----RSDRFYHAVAFTRVEL 70 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcE---eeeEEccCCCEeeeeeec---cCC----CCccceEEEEecceEE
Confidence 7899999999999999999999998654 4666 457899999999998652 111 1134568999999999
Q ss_pred EEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHhCCCCCCCCCchhhHhhhhhhCCCCCCCcceeccCCCCCCcc
Q 008549 413 FTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKV 489 (561)
Q Consensus 413 l~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---r~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~ 489 (561)
+.|++++|.+++.++|.+...+++.+..++.. +........+++|++.++..+.+..+.+...+..+..|+||+|--
T Consensus 71 ~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t~~~iA 150 (193)
T TIGR03697 71 LAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLSHQAIA 150 (193)
T ss_pred EEeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCCHHHHH
Confidence 99999999999999999999999988877733 444567788999999998888888888777777788999997754
Q ss_pred cc
Q 008549 490 KV 491 (561)
Q Consensus 490 ~~ 491 (561)
..
T Consensus 151 ~~ 152 (193)
T TIGR03697 151 EA 152 (193)
T ss_pred HH
Confidence 43
No 10
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.57 E-value=4.1e-14 Score=136.18 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=143.2
Q ss_pred hhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccc
Q 008549 306 KKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAEL 384 (561)
Q Consensus 306 ~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~ 384 (561)
...+.|..++.+....+......+.+++|+.|+.+||+++.+|+|.+|.++++... +|++ ..+.++++|++||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGRE---IILGFLGPGDFFGELA 79 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcE---EEEEEecCCchhhhHH
Confidence 45667777888888888889999999999999999999999999999999999654 4555 3468899999999997
Q ss_pred hhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHhCCCCCCCCCchhh
Q 008549 385 VDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSPLYVPL 461 (561)
Q Consensus 385 l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---r~~~~~~~~~~er~~~~ 461 (561)
++ .. .+++++++|+++|+++.+++++|.+++.++|.+...+...+.++++. .......+...+|++..
T Consensus 80 l~---~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~ 150 (214)
T COG0664 80 LL---GG------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERLSLLARKDVEERLARF 150 (214)
T ss_pred Hh---cC------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 62 21 26889999999999999999999999999999999999888887743 44455678888999999
Q ss_pred HhhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 462 RDKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 462 ~~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
...+....+.+...+..+..++++++--+.
T Consensus 151 l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~ 180 (214)
T COG0664 151 LLNLGRRLGIATEDGILIPLPLTHKDLAEY 180 (214)
T ss_pred HHHHhhccCCCCCCCcEEeccCCHHHHHHH
Confidence 888888888776666555677777665544
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.48 E-value=3.1e-13 Score=132.63 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=121.9
Q ss_pred HHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCcccccc
Q 008549 321 ALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSK 399 (561)
Q Consensus 321 ~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~ 399 (561)
.+......+.|++|+.|+.+||.++++|||.+|.|+++..+ +|++ .++.++.+|++||+.. ..+
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e---~i~~~~~~Gd~fG~~~------------~~~ 97 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRR---QIGAFHLPGDVFGLES------------GST 97 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcE---EEEEEecCCceecccC------------CCc
Confidence 34566788999999999999999999999999999998654 5555 3467889999999651 115
Q ss_pred ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH---HHHHhCCCCCCCCCchhhHhhhhhhCCCCCCCc
Q 008549 400 STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPSPLYVPLRDKVKEKTPIPQRSK 476 (561)
Q Consensus 400 ~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~r~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~ 476 (561)
+..+++|+++|+++.|++++|.+++.++|++...+.+.+..+++ ++.......++++|++.++....+..+..
T Consensus 98 ~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~---- 173 (230)
T PRK09391 98 HRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGA---- 173 (230)
T ss_pred CCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC----
Confidence 67899999999999999999999999999999999998887764 56667778899999999888877665431
Q ss_pred ceeccCCCCCCcccc
Q 008549 477 VKEKTPLPQQDKVKV 491 (561)
Q Consensus 477 v~~~~plt~~d~~~~ 491 (561)
..+..|+||+|--+.
T Consensus 174 ~~i~i~lt~~~IA~~ 188 (230)
T PRK09391 174 GMMALPMSRRDIADY 188 (230)
T ss_pred CEEEecCCHHHHHHH
Confidence 234567777664433
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.48 E-value=3.2e-13 Score=132.25 Aligned_cols=134 Identities=11% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCccccc
Q 008549 320 DALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFS 398 (561)
Q Consensus 320 ~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~ 398 (561)
..+...++.+.|++|+.|+.+||+++++|||.+|.|+++..+ +|++ .++.++.+|++||+.+++ ...
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e---~~~~~~~~g~~~G~~~~~---------~~~ 92 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKV---SLIDFFAAPCFIGEIELI---------DKD 92 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCE---eeeeecCCCCeEEeehhh---------cCC
Confidence 347788999999999999999999999999999999998654 5555 346889999999998652 223
Q ss_pred cccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH---HHHHhCCCCCCCCCchhhHhhh
Q 008549 399 KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT---RRKFRFPKRRPSPLYVPLRDKV 465 (561)
Q Consensus 399 ~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~---~r~~~~~~~~~~er~~~~~~~~ 465 (561)
+++.+++|+++|+++.+++++|.+++.++|.+...+++.+..++. ..........+++|++.++...
T Consensus 93 ~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~~ 162 (226)
T PRK10402 93 HETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILLT 162 (226)
T ss_pred CCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhc
Confidence 788899999999999999999999999999999988888777653 2333344456788887776543
No 13
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.3e-13 Score=140.49 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Q 008549 181 HCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVK 244 (561)
Q Consensus 181 ~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~ 244 (561)
.++|||+.|||||||||+.|.|..-++++..+.+.|+++.|+-|..+.+-+....+...+.++.
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~ 443 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKA 443 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999998877766665555544444333
No 14
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.44 E-value=7.9e-13 Score=126.92 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=111.7
Q ss_pred cceeeeeCCCcEEEcCCC--ccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCcccccccc
Q 008549 325 CVKPTFFTEHAHIIREGD--PIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKST 401 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd--~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~ 401 (561)
.++...|++|++|+.+|| +++++|+|++|.|+++..+ +|++ .++..+.+||+||+.++. . .+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e---~~l~~~~~Gd~~G~~~~~---------~-~~~~ 71 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNA---LTLRYVRPGEYFGEEALA---------G-AERA 71 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCeechHHhc---------C-CCCC
Confidence 467789999999999999 7799999999999998654 5666 457889999999996431 1 2577
Q ss_pred ceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhhhhCCCCCCCcce
Q 008549 402 KTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVKEKTPIPQRSKVK 478 (561)
Q Consensus 402 ~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~v~ 478 (561)
.+++|+++|+++.|++++| +|.+...+...+.+++ .++..........+|++.++.++.+..+.....+-.
T Consensus 72 ~~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~ 145 (202)
T PRK13918 72 YFAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGE 145 (202)
T ss_pred ceEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCe
Confidence 8999999999999999987 4566666665555444 334555667788999999888888776643333335
Q ss_pred eccCCCCCCcccc
Q 008549 479 EKTPLPQQDKVKV 491 (561)
Q Consensus 479 ~~~plt~~d~~~~ 491 (561)
+..|+||+|--..
T Consensus 146 ~~~~~t~~~iA~~ 158 (202)
T PRK13918 146 TMIYATHDELAAA 158 (202)
T ss_pred EEecCCHHHHHHH
Confidence 6778888764433
No 15
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.44 E-value=1.4e-12 Score=111.87 Aligned_cols=113 Identities=27% Similarity=0.409 Sum_probs=98.1
Q ss_pred ccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhh
Q 008549 310 EFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWA 388 (561)
Q Consensus 310 lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~ 388 (561)
+|..++++++..++..++.+.+.+|+.|+.+|+.++++|+|.+|.++++..+ +|++ ..+..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~g~~~~~-- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGRE---QIVGFLGPGDLFGELALL-- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcE---EEEEecCCccCcChHHHh--
Confidence 4789999999999999999999999999999999999999999999998654 3344 346889999999998652
Q ss_pred hcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHH
Q 008549 389 LRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALV 434 (561)
Q Consensus 389 l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~ 434 (561)
. ..++..+++|.++|.++.|++++|.++++++|.+...+
T Consensus 76 -~------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 76 -G------NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred -c------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 1 22678899999999999999999999999999887654
No 16
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.38 E-value=3e-12 Score=105.69 Aligned_cols=90 Identities=21% Similarity=0.308 Sum_probs=77.4
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEec
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALT 408 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 408 (561)
+.|++|++|+++|+.++++|||++|.++++..+.+... .++..+.+|++||+.+++ .+ .++..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~--~~~~~~~~g~~~g~~~~~---~~------~~~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKE--QIIFFLGPGDIFGEIELL---TG------KPSPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEE--EEEEEEETTEEESGHHHH---HT------SBBSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceeccee--eeecceeeeccccceeec---CC------CccEEEEEEcc
Confidence 68999999999999999999999999999976543321 246889999999998663 22 26888999999
Q ss_pred ceeEEEeCHHHHHHHHHhcHH
Q 008549 409 NIEAFTLMADDLKIVFNEKMN 429 (561)
Q Consensus 409 ~~~ll~i~~~~f~~ll~~~p~ 429 (561)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999985
No 17
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.2e-11 Score=104.94 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=97.9
Q ss_pred ccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhh
Q 008549 310 EFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWA 388 (561)
Q Consensus 310 lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~ 388 (561)
+|.+++++.++.++..++.+.+++|++|+++|++++++|||.+|.++++..+ +|++ ..+..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~---~~~~~~~~g~~~g~~~~~-- 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE---QILGILGPGDFFGELALL-- 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce---EEEEeecCCceechhhhc--
Confidence 5789999999999999999999999999999999999999999999998764 3444 346889999999998652
Q ss_pred hcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHH
Q 008549 389 LRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 435 (561)
Q Consensus 389 l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~ 435 (561)
.. ...++..+++|.++|.++.++.+++...+.+++.+....+
T Consensus 76 -~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 76 -TN----SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred -cC----CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 10 1225678899999999999999999999999887755444
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.33 E-value=1.6e-11 Score=128.50 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=112.0
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.+++.++|+|+.++++++++|...+...+|.+||.|+..|.+.+++|+|.+|.|+++..++ + . +..+..||.||
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g-~-v----~~~~~~gdlFg 79 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG-E-V----LDRLAAGDLFG 79 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC-e-e----eeeeccCcccc
Confidence 5688999999999999999999999999999999999999999999999999999987543 2 2 48999999999
Q ss_pred ccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 008549 382 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 444 (561)
Q Consensus 382 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 444 (561)
-.+++ ... .....+.|.+|+.+|.|+++.|.++++++|.|+.++...+..|+++
T Consensus 80 ~~~l~---~~~------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~ 133 (610)
T COG2905 80 FSSLF---TEL------NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRD 133 (610)
T ss_pred chhhc---ccC------CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 98762 211 3344678888999999999999999999999999999888887753
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.25 E-value=5.5e-11 Score=126.76 Aligned_cols=113 Identities=19% Similarity=0.333 Sum_probs=98.3
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.+.++++++|+++++++++.++..++.+.|++|++|+++||.++.+|+|++|.|+++..+++.+ .++..+++|++||
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge---~~l~~l~~Gd~fG 83 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES---RPEFLLKRYDYFG 83 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc---EEEEEeCCCCEee
Confidence 4568899999999999999999999999999999999999999999999999999987653323 3468899999999
Q ss_pred ccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcH
Q 008549 382 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKM 428 (561)
Q Consensus 382 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p 428 (561)
+. + .+ .++..+++|.++|+++.|+++.|..+...++
T Consensus 84 ~~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 84 YG-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred hh-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 75 3 21 2688899999999999999999998887755
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.25 E-value=2.5e-11 Score=115.12 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=98.8
Q ss_pred cccccccchhhHHHHhhchhhhhhhhhhccCCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHH
Q 008549 6 SQYDKIIFVFSKIIYLLCYKQMAGIILLEKQGYPIFFDPMKYFKILLCIRYLARIISIYSLFSKAVRSSTELSEAKWVKI 85 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~lP~~~l~~~~~~~~~~~~~~~~~~~llr~~~~~~~l~Rl~rv~rl~~~l~~~~~~~~~~~~~~~ 85 (561)
.+|+++.|.++|+++++|.......... +..+.....+++|+++ +.|++|+.+..+.+++....+... ...
T Consensus 26 ~~y~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~----~~R~l~~~~~~~~~~~~~~~~~~~-~~~- 96 (200)
T PF00520_consen 26 RRYFRSWWNWFDFISVIPSIVSVILRSY---GSASAQSLLRIFRLLR----LLRLLRLLRRFRSLRRLLRALIRS-FPD- 96 (200)
T ss_dssp GCCCCSHHHHHHHHHHHHHCCHHCCHCS---S--HHCHCHHHHHHHH----HHHHHHHHHTTTSHHHHHHHHHHH-HHH-
T ss_pred HHHhcChhhccccccccccccccccccc---ccccccceEEEEEeec----cccccccccccccccccccccccc-ccc-
Confidence 7999999999999999999665432111 1100011233333211 445555555554444332222211 111
Q ss_pred HHHHH-HHHHHHHHHHHHHHhHhhHHHHHHHHHhhhccCCCccccccccCcccCccccccccCCCCCCCCCccccccccc
Q 008549 86 AVNLY-LYLQAANVFGGLWYFMAIERVIECWTKACINHTGQHCHFSCRVNLEEDRTYINGFCPTKIRNTTIHDFGIFHGA 164 (561)
Q Consensus 86 ~~~ll-~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~g~~~~~ 164 (561)
+.+++ .++++.|+.||+++.+.......+ | ..++-...
T Consensus 97 l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~----------------~------~~~~~~~~------------------- 135 (200)
T PF00520_consen 97 LFKFILLLFIVLLFFACIGYQLFGGSDNSC----------------C------DPTWDSEN------------------- 135 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTS-----------------------------SS----------------------
T ss_pred ccccccccccccccccchhheecccccccc----------------c------cccccccc-------------------
Confidence 22333 445678999999988773111000 0 00000000
Q ss_pred cccCcccCCcHHHHHHHHHHHHHHHhhcccCcccccC-----CchhhHHH-HHHHHHHHHHHHHHHHHH
Q 008549 165 LESGIVEGTSILQKLLHCFVWGLQNLSNLGHDLQSGS-----DVWENIFV-ILVVSSGFLFFALLIGNM 227 (561)
Q Consensus 165 ~~~~~~~~~~~~~~Yl~slYwa~~tlttvGyGDi~p~-----t~~E~~~~-i~~~l~G~~~~a~iig~v 227 (561)
.....+..+.|..|+||++.++|+.|+||+.+. +..+.++. +++.+.+.++++.++|.|
T Consensus 136 ----~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 136 ----DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp -----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 012345677899999999999999999999987 88899888 666666678899888865
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-11 Score=127.74 Aligned_cols=124 Identities=20% Similarity=0.318 Sum_probs=106.2
Q ss_pred HHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 298 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 298 ~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
.+.+.++|+++|+|+++|++.+..+++.++..+|..|++|+++|+.++.+|+|.+|.|++...+++..+- ..+..++.|
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~-~~lr~l~kG 345 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQP-QELRTLNKG 345 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCch-hHHhhcccc
Confidence 3456789999999999999999999999999999999999999999999999999999999766542222 346889999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecc-eeEEEeCHHHHHHHHHhcHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTN-IEAFTLMADDLKIVFNEKMNQA 431 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~i~~~~f~~ll~~~p~~~ 431 (561)
|+|||-+|+ +...|++++.|..+ ++++.|+++.|..++....++.
T Consensus 346 d~FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 346 DYFGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred chhhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 999998773 22368999999988 9999999999999987755544
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=4.8e-11 Score=118.31 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=98.0
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.+.+++.-+|++++++.+.++++.|..+.++.|+.|+++|+.++.+|+|.+|.+.|+..+ +. +..+++|..||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~---~~----v~~~~~g~sFG 193 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG---TY----VTTYSPGGSFG 193 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC---eE----EeeeCCCCchh
Confidence 456778889999999999999999999999999999999999999999999999999742 22 37899999999
Q ss_pred ccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcH
Q 008549 382 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKM 428 (561)
Q Consensus 382 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p 428 (561)
|++|++ ++||.+|+.|.+++.+|.|++..|..++-.+-
T Consensus 194 ElALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 194 ELALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred hhHhhh---------CCCcccceeeccccceEEEeeceeEEEeeccc
Confidence 998852 24899999999999999999999988766543
No 23
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.16 E-value=3.6e-12 Score=125.52 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 008549 180 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNM 227 (561)
Q Consensus 180 l~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v 227 (561)
-.|||||+.|||||||||..|.|.+-+++..++-+.|++..|.-+-.+
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 357999999999999999999999999999999999998877755433
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-11 Score=124.88 Aligned_cols=116 Identities=19% Similarity=0.356 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecC
Q 008549 296 IKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLE 375 (561)
Q Consensus 296 i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~ 375 (561)
=..++..+.+....+.++++..++.+++..|.+..|.+|+.|++|||+++++|++.+|++.|.. +|+- ++.++
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l-----l~~m~ 219 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL-----LGKMG 219 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee-----eeccC
Confidence 3456667788888999999999999999999999999999999999999999999999999987 3332 58899
Q ss_pred CCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhc
Q 008549 376 DSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEK 427 (561)
Q Consensus 376 ~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~ 427 (561)
+|..|||.+++ .++ +|+++|+|+++|.+|.|+|+.|+.++...
T Consensus 220 ~gtvFGELAIL---ync------tRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 220 AGTVFGELAIL---YNC------TRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred CchhhhHHHHH---hCC------cchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999884 334 79999999999999999999999998763
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.11 E-value=3.7e-10 Score=91.36 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 232 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~ 232 (561)
.|..|+||+++|+||+||||+.|.+...++++++.+++|..++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999998875
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.6e-09 Score=111.10 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhcc
Q 008549 174 SILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKP 253 (561)
Q Consensus 174 ~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~ 253 (561)
+-+..|-.|+||.+.|+|||||||.+|.|..-++++.+..++|+.+||.--|.+++=+.-+-+.++ .-+.|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~-------RQKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQH-------RQKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHH-------HHHHHHh
Confidence 456789999999999999999999999999999999999999999999988877765443322111 1235666
Q ss_pred CCCCCHHHHHHHHHHhHH
Q 008549 254 FQNLSANLQQEMKKYKPY 271 (561)
Q Consensus 254 ~~~l~~~L~~rv~~y~~~ 271 (561)
.++.-.+|.+-.-+||--
T Consensus 338 rr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hcchHHHHHHHHHHHHhc
Confidence 778888888888777653
No 27
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=3.1e-09 Score=105.55 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=101.4
Q ss_pred HHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 298 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 298 ~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
..++.++|+++|++..+...+...++..+.++.|++|+.|+.+|++++.+|+|.+|.|.+....+|. .+ .++.|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v-----~v-kl~~~ 308 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGV-----EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCe-----EE-Eechh
Confidence 4678899999999999999999999999999999999999999999999999999999988654442 23 89999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHh
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNE 426 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~ 426 (561)
|+|||.+++ . ..++.++|.|.+...|..++++.|+.|+.-
T Consensus 309 dyfge~al~---~------~~pr~Atv~a~~~~kc~~~dk~~ferllgp 348 (368)
T KOG1113|consen 309 DYFGELALL---K------NLPRAATVVAKGRLKCAKLDKPRFERLLGP 348 (368)
T ss_pred hhcchHHHH---h------hchhhceeeccCCceeeeeChHHHHHHhhH
Confidence 999999774 2 238999999999999999999999999865
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.8e-09 Score=106.23 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFAL----LIGNMQIYLQSR 234 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~----iig~v~~il~~~ 234 (561)
.--.+|||.+.||||.||||..|.|...++|..++.+-|+++-|. |+.+++.|.++-
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQN 416 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQN 416 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhh
Confidence 344789999999999999999999999999999999999988876 557777776653
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.33 E-value=5.1e-06 Score=87.48 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 231 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il 231 (561)
.+..|+||++.|+||+||||+.|.|...++|+++++++|..++++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999999999999999998877643
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.20 E-value=2.3e-06 Score=93.96 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=94.7
Q ss_pred HHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEeccchhhhhcccCccc
Q 008549 318 TLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFE 396 (561)
Q Consensus 318 ~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~ 396 (561)
++..+=..+.-..+.+|+.++++||..+.+|+|++|.++-... .+|+.. .+..++.||.+|+... +...
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~---i~~EygrGd~iG~~E~---lt~~---- 569 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKE---IVGEYGRGDLIGEVEM---LTKQ---- 569 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccch---hhhhccCcceeehhHH---hhcC----
Confidence 5666666777889999999999999999999999999996643 344442 2588999999999855 2222
Q ss_pred cccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 397 FSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 397 ~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
+|..|+.|+.++++..||..-|..+..+||.+...+.+.+.++.
T Consensus 570 --~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 570 --PRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --CccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999999998888877765
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.8e-05 Score=78.52 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccC
Q 008549 175 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 254 (561)
Q Consensus 175 ~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~ 254 (561)
...-|+.|++....|..++||||+.|.|.--+..+++.-++|+++.|.+++.++ ++-++..--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvis--------RKLeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIA--------RKLELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 446799999999999999999999999999999999999999999999998886 344444455678899988
Q ss_pred CCCCHHHHHHHHHHhHHHHH
Q 008549 255 QNLSANLQQEMKKYKPYIRR 274 (561)
Q Consensus 255 ~~l~~~L~~rv~~y~~~~~~ 274 (561)
.++.+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777776665
No 32
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.00 E-value=4.1e-06 Score=87.68 Aligned_cols=129 Identities=12% Similarity=0.173 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccC
Q 008549 175 ILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 254 (561)
Q Consensus 175 ~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~ 254 (561)
..-.|-.|.|+.+.||+||||||+...|...+.|.++.++.|..+||--+-.+..++.+...---++...- -+
T Consensus 285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gk 357 (1103)
T KOG1420|consen 285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GK 357 (1103)
T ss_pred ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CC
Confidence 34568899999999999999999999999999999999999999999999999988877543222221110 00
Q ss_pred CCC---CHHHHHHHHHHhHHH-HHhhCCCC-HHHHHhcCCHHHHHHHHHHHHHHHHhhCccccc
Q 008549 255 QNL---SANLQQEMKKYKPYI-RRKTNHID-IENLLNNIPKELGKKIKRELCWHLLKKVHEFRM 313 (561)
Q Consensus 255 ~~l---~~~L~~rv~~y~~~~-~~~~~~~~-~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~ 313 (561)
+++ -.-..+.|..|++-. ++.....+ +--+|...||.|--|- ++.....++.+|++
T Consensus 358 khivvcghityesvshflkdflhedrddvdvevvflhr~~pdleleg---lfkrhft~veffqg 418 (1103)
T KOG1420|consen 358 KHIVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEG---LFKRHFTQVEFFQG 418 (1103)
T ss_pred eeEEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHH---HHhhheeeEEEecc
Confidence 111 111233444444433 22222344 2245667777775442 33445566777775
No 33
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.84 E-value=6.3e-05 Score=77.35 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcccCcc--cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDL--QSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 231 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGD--i~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il 231 (561)
..+..+|+|++.|+||||||. ++|....-.++.++=+++|.++.|+++|.+-+=+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999998 5677777777788888999999999999876544
No 34
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.78 E-value=0.00063 Score=60.61 Aligned_cols=124 Identities=16% Similarity=0.192 Sum_probs=94.5
Q ss_pred cCCHHHHHHHhhc-ceeeeeCCCcEEEcCCC-ccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhc
Q 008549 313 MLKEETLDALCDC-VKPTFFTEHAHIIREGD-PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALR 390 (561)
Q Consensus 313 ~l~~~~l~~L~~~-~~~~~~~~ge~I~~eGd-~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~ 390 (561)
++|......++.. .+.....+|+.-..||. +.+.+-++++|.++|... |+ .+..+.|-++.....+. ++.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~-----fLH~I~p~qFlDSPEW~-s~~ 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR-----FLHYIYPYQFLDSPEWE-SLR 85 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE-----eeEeecccccccChhhh-ccc
Confidence 3588888888877 67788999999988885 679999999999999863 32 24666777766654431 111
Q ss_pred ccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 008549 391 DCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRRKF 447 (561)
Q Consensus 391 ~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~r~~ 447 (561)
+ .....-..|++|.++|..+.++|+.+..++.+.|-++..+...+.+-..++.-
T Consensus 86 ~---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy 139 (153)
T PF04831_consen 86 P---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLY 139 (153)
T ss_pred c---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 1 11124567999999999999999999999999999999888887776655443
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.64 E-value=0.00052 Score=76.08 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=94.1
Q ss_pred HhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEecc-chhhhhcccCcccccc
Q 008549 322 LCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAE-LVDWALRDCSLFEFSK 399 (561)
Q Consensus 322 L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~-~l~~~l~~~~~~~~~~ 399 (561)
++.+++...+..|++|++.|++.+.+|.+.+|.+.++..+ +|++. .+..+.+|+.|-.. +++..+.+. ....
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~---llk~V~~G~~~tSllSiLd~l~~~---ps~~ 184 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY---LLKTVPPGGSFTSLLSILDSLPGF---PSLS 184 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee---eEeeccCCCchHhHHHHHHhccCC---Cccc
Confidence 3478888899999999999999999999999999998654 45653 36789999888775 342222211 1124
Q ss_pred ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 008549 400 STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 444 (561)
Q Consensus 400 ~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 444 (561)
+...++|.++|.+..++.+.|..+..++|+-...++|.+..|+++
T Consensus 185 ~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 185 RTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred ceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999999999888865
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.63 E-value=6.6e-05 Score=80.14 Aligned_cols=59 Identities=12% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 236 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~ 236 (561)
-+..|+||+++++||+|||+++|.|...++|+|+..++|+=++..++++++..+...-.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999998876543
No 37
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.35 E-value=0.0049 Score=58.62 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=77.4
Q ss_pred HHHHHhhcceeeeeCCCcEE-EcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccc
Q 008549 318 TLDALCDCVKPTFFTEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFE 396 (561)
Q Consensus 318 ~l~~L~~~~~~~~~~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~ 396 (561)
.++.+.....+..+++|..+ +......+.++++.+|.|.+.. .++ - .+....+..+||-... +.+.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~-l----l~~t~~aP~IlGl~~~---~~~~---- 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN-V----LIGITQAPYIMGLADG---LMKN---- 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC-e----EEEeccCCeEeecccc---cCCC----
Confidence 34556667778899999997 5444444789999999999954 333 2 2467788888887532 1111
Q ss_pred cccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHH
Q 008549 397 FSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWR 440 (561)
Q Consensus 397 ~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~ 440 (561)
.....++|.++|+++.++.++|.++++++.-|.....-.++.
T Consensus 81 --~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~~~l~~~ 122 (207)
T PRK11832 81 --DIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQ 122 (207)
T ss_pred --CceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHHHHHHHH
Confidence 234579999999999999999999999988665555544443
No 38
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.0086 Score=59.69 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcccCcccccC-------Cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGS-------DVWEN-IFVILVVSSGFLFFALLIGNMQIYLQSRTV 236 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~-------t~~E~-~~~i~~~l~G~~~~a~iig~v~~il~~~~~ 236 (561)
|..|+||-+.|+||+|+||.++. +..++ .++.+.+++|..+++-.++-+.-.+..++.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77899999999999999998774 34555 455666677877777777766666655544
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.32 E-value=0.012 Score=63.52 Aligned_cols=110 Identities=11% Similarity=0.196 Sum_probs=87.0
Q ss_pred HHHHHhhCcccccCCHHHHHHHhhcceeeee-CCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCe
Q 008549 301 CWHLLKKVHEFRMLKEETLDALCDCVKPTFF-TEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 379 (561)
Q Consensus 301 ~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~-~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~ 379 (561)
..++..+.|-|.+++-...++||..|....+ ..|.+|+..|+.-+..++|++|.|++...+|..+ .+.-|+-
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e-------~l~mGnS 351 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE-------ELKMGNS 351 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE-------Eeecccc
Confidence 3678889999999999999999988876654 6889999999999999999999999999876554 5788999
Q ss_pred EeccchhhhhcccCccccccccceE-EEecceeEEEeCHHHHHHHHHh
Q 008549 380 YGAELVDWALRDCSLFEFSKSTKTI-EALTNIEAFTLMADDLKIVFNE 426 (561)
Q Consensus 380 FGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~ll~i~~~~f~~ll~~ 426 (561)
||...- .+.+ ....-+ .-+.||+...|...|+-.++..
T Consensus 352 FG~~PT---~dkq------ym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 352 FGAEPT---PDKQ------YMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred cCCCCC---cchh------hhhhhhheecccceEEEeehhhHHHHHHH
Confidence 998621 1111 011122 3478999999999999998876
No 40
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.033 Score=56.91 Aligned_cols=56 Identities=11% Similarity=0.251 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhcccCccccc--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSG--SDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 233 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p--~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~ 233 (561)
-.+.||-|++-|=||+|||-=.+ .=..-.+..++=+++|+++-|+++|.+-+=++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577889999999999994322 112223334444678889999999887655443
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.62 E-value=0.0026 Score=63.32 Aligned_cols=50 Identities=12% Similarity=0.226 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNM 227 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v 227 (561)
+..-|||||.+.+||||||-.+|.|..-++|+|+.-++|+-+--.++..+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 35578999999999999999999999999999999999875554444433
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=94.62 E-value=0.0059 Score=65.06 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcccCcccccCCchhh--------HHHHHHHHHHHHHHHHHH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDLQSGSDVWEN--------IFVILVVSSGFLFFALLI 224 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGDi~p~t~~E~--------~~~i~~~l~G~~~~a~ii 224 (561)
--|+.|+|++++++||||+||+.|.+...+ .+..++.++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 348899999999999999999999998766 578888888888877776
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.11 E-value=0.073 Score=57.69 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 303 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 303 ~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..|.....|+++-...+..++..++...++...++|+.|+.+...|++++|.|-+.. .++.|-.+||-
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g------------qi~mp~~~fgk 104 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG------------QIYMPYGCFGK 104 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec------------ceecCcccccc
Confidence 356778899999999999999999999999999999999999999999999998742 24566667887
Q ss_pred cchhhhhcccCccccccccceEEEecceeEEEeCH
Q 008549 383 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMA 417 (561)
Q Consensus 383 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~ 417 (561)
-. + ..|+.++-.++++++++++.
T Consensus 105 r~-----------g-~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 105 RT-----------G-QNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred cc-----------c-cccccceeeecccceeeeec
Confidence 61 1 14777888899999988854
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=93.51 E-value=6.3 Score=47.11 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=14.6
Q ss_pred ccccccccchhhHHHHhh
Q 008549 5 YSQYDKIIFVFSKIIYLL 22 (561)
Q Consensus 5 ~~~Y~~~~~F~lDlls~l 22 (561)
+..|+++.|=++|++.++
T Consensus 1207 ~laYFKSfWNwLEIl~Il 1224 (1634)
T PLN03223 1207 YLAYFLSGWNYVDFASIG 1224 (1634)
T ss_pred hhhHhccchHHHHHHHHH
Confidence 468999999999996543
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.17 E-value=0.13 Score=54.62 Aligned_cols=27 Identities=11% Similarity=0.039 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhcccCcccccCCchhh
Q 008549 180 LHCFVWGLQNLSNLGHDLQSGSDVWEN 206 (561)
Q Consensus 180 l~slYwa~~tlttvGyGDi~p~t~~E~ 206 (561)
..|+||.+.|++||||||..|.-..-.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sq 245 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQ 245 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhh
Confidence 357899999999999999998654433
No 46
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.10 E-value=9.4 Score=44.07 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=11.2
Q ss_pred cccccccchhhHHH
Q 008549 6 SQYDKIIFVFSKII 19 (561)
Q Consensus 6 ~~Y~~~~~F~lDll 19 (561)
.-|+++.|=.+|.+
T Consensus 1187 ~aYl~ssWN~LDgf 1200 (1956)
T KOG2302|consen 1187 QAYLRSSWNVLDGF 1200 (1956)
T ss_pred HHHHHHHHHhhhHH
Confidence 56999999888854
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=83.74 E-value=4.3 Score=37.81 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=54.6
Q ss_pred hhHHhhhccCCCCCHHHHHHHHHHhHHHHHhh--CCCCHHHHHhcC--CHHHHHHHHHHHHHHHHhhCcccccCCHH
Q 008549 245 PREIEEWKPFQNLSANLQQEMKKYKPYIRRKT--NHIDIENLLNNI--PKELGKKIKRELCWHLLKKVHEFRMLKEE 317 (561)
Q Consensus 245 ~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~--~~~~~~~il~~L--p~~Lr~~i~~~l~~~~L~~i~lF~~l~~~ 317 (561)
++++++|++ ++|++.++.+..||+-.+... .|.+|+++..+| |.++-.|+..+.-.+-...-|-+.+.+..
T Consensus 7 L~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 7 LNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 888999997 899999999999999777643 567799999988 67777777776655555555666655543
No 48
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.88 E-value=48 Score=37.96 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHHHHHh-----hCcccccCCHHHHHHHhhcceeeeeC-------------------CCcEEEcCCC
Q 008549 287 NIPKELGKKIKRELCWHLLK-----KVHEFRMLKEETLDALCDCVKPTFFT-------------------EHAHIIREGD 342 (561)
Q Consensus 287 ~Lp~~Lr~~i~~~l~~~~L~-----~i~lF~~l~~~~l~~L~~~~~~~~~~-------------------~ge~I~~eGd 342 (561)
.||+.||+.+..+...+... .-.+++++|++..+.|+.++-...++ =...++.+||
T Consensus 372 ~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge 451 (727)
T KOG0498|consen 372 QLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGE 451 (727)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCC
Confidence 39999999999887766544 34678899998888887766433222 1223455555
Q ss_pred ccCEEEEEEEceEE
Q 008549 343 PIDELIFVMQGNLW 356 (561)
Q Consensus 343 ~~~~lyfI~~G~V~ 356 (561)
|+|.+|.+-
T Consensus 452 -----~iireGd~v 460 (727)
T KOG0498|consen 452 -----YIIREGDPV 460 (727)
T ss_pred -----eEEecCCcc
Confidence 899999873
No 49
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.00 E-value=15 Score=45.65 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=38.7
Q ss_pred HHhhcccCcccccCCchhhHHHHHHHHHHHHHHH-H----HHHHHHH----HHH-HHhHHHHHHhcchhHHhhhccCCCC
Q 008549 188 QNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFA-L----LIGNMQI----YLQ-SRTVRLKEMTVKPREIEEWKPFQNL 257 (561)
Q Consensus 188 ~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a-~----iig~v~~----il~-~~~~~~~~~~~~~~~i~~~m~~~~l 257 (561)
.-.+.++-|.+...+.+..+|-++..++|.++.- + +|.+... ... .+...+.++...+..+...-.++.+
T Consensus 1060 ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~eq~~~~~~~~~l~sk~~~r~i 1139 (1592)
T KOG2301|consen 1060 IDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEEQKKRLNAAKKLGSKPPQRPI 1139 (1592)
T ss_pred hhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence 3446677777777777777776666666654432 2 2222221 111 2334444444555555555566666
Q ss_pred CHH
Q 008549 258 SAN 260 (561)
Q Consensus 258 ~~~ 260 (561)
|..
T Consensus 1140 pr~ 1142 (1592)
T KOG2301|consen 1140 PRP 1142 (1592)
T ss_pred CCC
Confidence 643
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=78.38 E-value=8.5 Score=36.00 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=44.3
Q ss_pred hhHHhhhccCCCCCHHHHHHHHHHhHHHHHh--hCCCCHHHHHhcC--CHHHHHHHHHHH
Q 008549 245 PREIEEWKPFQNLSANLQQEMKKYKPYIRRK--TNHIDIENLLNNI--PKELGKKIKREL 300 (561)
Q Consensus 245 ~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~l 300 (561)
+++++.+++ ++|++-++++.+||+-.... .+|.+|+++.++| |..+-+++..+.
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 888999997 69999999999999987764 4578899999997 666766666544
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=77.71 E-value=2 Score=38.24 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhcc
Q 008549 174 SILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKP 253 (561)
Q Consensus 174 ~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~ 253 (561)
........++++.+.+++. +-++..|.+...+++.+++.+++.++.++.-+++++.+... .....++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHH
Confidence 3455677788888888776 44569999999999999999999999999999999988653 23444666666666
Q ss_pred CC
Q 008549 254 FQ 255 (561)
Q Consensus 254 ~~ 255 (561)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 54
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=74.16 E-value=5.6 Score=30.34 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=32.3
Q ss_pred eeeCCCcEEEcCCCccC-EEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 329 TFFTEHAHIIREGDPID-ELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~-~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
..++||+..-..-.... .+++|++|.+.+.. + ++. ..+.+||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-~~~------~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-GER------VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-TEE------EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-cEE------eEccCCEEEE
Confidence 46788887655444555 89999999999983 3 333 5689998753
No 53
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=73.28 E-value=18 Score=31.65 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=33.0
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
....++||..+-..-.....+++|++|++.+...+++++ ..+.+||.+--.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~------~~L~aGD~i~~~ 88 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV------HPIRPGTMYALD 88 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE------EEeCCCeEEEEC
Confidence 345678887553221112479999999999873222444 579999987543
No 54
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=68.39 E-value=14 Score=33.79 Aligned_cols=74 Identities=7% Similarity=0.119 Sum_probs=44.1
Q ss_pred ceeeee-CCCcEE-EcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccce
Q 008549 326 VKPTFF-TEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKT 403 (561)
Q Consensus 326 ~~~~~~-~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~t 403 (561)
++...+ .+|+.- +...+ .+.+|++++|.+.+...++|+.. ...+++||+|=-- . .-+.+
T Consensus 29 ~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~----~v~L~eGd~flvP--------~------gvpHs 89 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKRE----DVPIREGDIFLLP--------P------HVPHS 89 (159)
T ss_pred EEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEE----EEEECCCCEEEeC--------C------CCCcc
Confidence 333344 444333 44433 68999999999999766655421 2579999987433 1 11223
Q ss_pred EEEecceeEEEeCHH
Q 008549 404 IEALTNIEAFTLMAD 418 (561)
Q Consensus 404 v~A~~~~~ll~i~~~ 418 (561)
-++.++|.+++|.+.
T Consensus 90 P~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 90 PQRPAGSIGLVIERK 104 (159)
T ss_pred cccCCCcEEEEEEeC
Confidence 444566777766554
No 55
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.14 E-value=24 Score=43.88 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=17.3
Q ss_pred ccccccccchhhHHHHhhchhhh
Q 008549 5 YSQYDKIIFVFSKIIYLLCYKQM 27 (561)
Q Consensus 5 ~~~Y~~~~~F~lDlls~lP~~~l 27 (561)
+..|.+++|-.+|.+-+. ++++
T Consensus 499 ~~~yF~~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 499 PRNYFRRGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred cHHHHhhhcchheEEEEe-hhhH
Confidence 357888999999998888 5543
No 56
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=63.98 E-value=95 Score=28.27 Aligned_cols=56 Identities=13% Similarity=0.015 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHHHHhhcccCcccccCCchh-----hHHHHHHHHHHHHHHHHHHHHH
Q 008549 172 GTSILQKLLHCFVWGLQNLSNLGHDLQSGSDVWE-----NIFVILVVSSGFLFFALLIGNM 227 (561)
Q Consensus 172 ~~~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E-----~~~~i~~~l~G~~~~a~iig~v 227 (561)
++........++-.|+.++...--|+--+..... ...+.+..+.-.++.++++.++
T Consensus 135 ~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nl 195 (200)
T PF00520_consen 135 NDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNL 195 (200)
T ss_dssp --SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHH
Confidence 3445666778888888888877777655555554 4455555555555555555443
No 57
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=62.96 E-value=3.1e+02 Score=32.25 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHHHHH----HhhCcccccCCHHHHHHHhhcc
Q 008549 287 NIPKELGKKIKRELCWHL----LKKVHEFRMLKEETLDALCDCV 326 (561)
Q Consensus 287 ~Lp~~Lr~~i~~~l~~~~----L~~i~lF~~l~~~~l~~L~~~~ 326 (561)
.+|+.||.++..++.... +..-.+++.+|+....+++..+
T Consensus 328 ~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l 371 (823)
T PLN03192 328 RLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHL 371 (823)
T ss_pred CCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHH
Confidence 399999999988765433 2223456677877777776554
No 58
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=59.41 E-value=13 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=29.1
Q ss_pred eCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 331 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 331 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
..||..-..-.. +++.+|++|.|.+... +|.. ..+++||.|-
T Consensus 14 ~~pg~~~~~~~~--~E~~~vleG~v~it~~-~G~~------~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYPE--DEFFYVLEGEVTITDE-DGET------VTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEESS--EEEEEEEEEEEEEEET-TTEE------EEEETTEEEE
T ss_pred ECCceeEeeCCC--CEEEEEEEeEEEEEEC-CCCE------EEEcCCcEEE
Confidence 455654433222 7888999999999865 4444 5789999874
No 59
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=57.30 E-value=28 Score=30.45 Aligned_cols=50 Identities=12% Similarity=0.030 Sum_probs=35.9
Q ss_pred hcceeeeeCCCcEE-EcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 324 DCVKPTFFTEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 324 ~~~~~~~~~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.......+++|+-+ .+.-...+.+|+|++|...+... +++ ..+++||.+=
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~------~~v~~gd~~~ 86 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE------VEVKAGDSVY 86 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE------EEecCCCEEE
Confidence 34556678888885 44444478999999999999874 333 4688888763
No 60
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=54.88 E-value=22 Score=33.04 Aligned_cols=69 Identities=9% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCCc-EEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecce
Q 008549 332 TEHA-HIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNI 410 (561)
Q Consensus 332 ~~ge-~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~ 410 (561)
-||+ .-+.- +..+.+|++++|.+.+...++|+.. ...+.+||+|=-- .. -+.+-++.++|
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~----~v~L~eGd~fllP--------~g------vpHsP~r~~~t 102 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR----DVPIREGEMFLLP--------PH------VPHSPQREAGS 102 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee----eEEECCCCEEEeC--------CC------CCcCCccCCCe
Confidence 4553 22333 4568999999999998876665421 2579999987432 11 12233445777
Q ss_pred eEEEeCHHH
Q 008549 411 EAFTLMADD 419 (561)
Q Consensus 411 ~ll~i~~~~ 419 (561)
..++|.+..
T Consensus 103 v~LviE~~r 111 (177)
T PRK13264 103 IGLVIERKR 111 (177)
T ss_pred EEEEEEeCC
Confidence 777775543
No 61
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=49.86 E-value=38 Score=29.56 Aligned_cols=50 Identities=20% Similarity=0.122 Sum_probs=38.8
Q ss_pred ceeeeeCCCcEEEcCCCc-cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 326 VKPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
+....+.||..+-.---+ .+...+|++|.+++... ++. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~------~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK------KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc------eEecCCCEEEEC
Confidence 345678999988766665 67999999999999875 343 579999998765
No 62
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=49.65 E-value=41 Score=25.01 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHhcchhHHhhhccC
Q 008549 211 LVVSSGFLFFALLIGNMQIYLQSR---TVRLKEMTVKPREIEEWKPF 254 (561)
Q Consensus 211 ~~~l~G~~~~a~iig~v~~il~~~---~~~~~~~~~~~~~i~~~m~~ 254 (561)
.+.+++++.|+.+|.. ++++. .+.....++|++.+-+.+++
T Consensus 14 ~l~vl~~~~Ftl~IRr---i~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 14 ILIVLFGASFTLFIRR---ILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHHHH---HHHhccccccchhHHHHHHHHHHHHHcc
Confidence 3344444445544433 33332 23334678888888777653
No 63
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=45.89 E-value=37 Score=28.89 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhHHHHHh----------hCCCCHHHHHhcCCHHHHHHHHHH
Q 008549 256 NLSANLQQEMKKYKPYIRRK----------TNHIDIENLLNNIPKELGKKIKRE 299 (561)
Q Consensus 256 ~l~~~L~~rv~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 299 (561)
-||.+++..|..++...-.. ....+.-.++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999988865432 123456799999999999998764
No 64
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=45.32 E-value=81 Score=36.05 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=44.8
Q ss_pred HHHHHHHh--hcccCcccccCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhcchhHHhhhcc
Q 008549 183 FVWGLQNL--SNLGHDLQSGSDVW------ENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRL-KEMTVKPREIEEWKP 253 (561)
Q Consensus 183 lYwa~~tl--ttvGyGDi~p~t~~------E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~-~~~~~~~~~i~~~m~ 253 (561)
+.-++.|+ .|+|+||....... -.+|.+++.++-++++-.+|+-|+.......... .+.+.+--++-- |-
T Consensus 591 ~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~iL-~l 669 (782)
T KOG3676|consen 591 FSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAATIL-ML 669 (782)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHH-HH
Confidence 33334444 58999997654333 3455556666666666667777776666554443 444433333332 23
Q ss_pred CCCCCHHHHHH
Q 008549 254 FQNLSANLQQE 264 (561)
Q Consensus 254 ~~~l~~~L~~r 264 (561)
++.+|+.++.+
T Consensus 670 Ers~p~~~r~~ 680 (782)
T KOG3676|consen 670 ERSLPPALRKR 680 (782)
T ss_pred HhcCCHHHHHH
Confidence 45666655554
No 65
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=38.53 E-value=1.4e+02 Score=31.50 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 174 SILQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 233 (561)
Q Consensus 174 ~~~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~ 233 (561)
...--|+.+|-|++..+.+++-++....-..=..+++++.+++.+.+.+.|.+++..++-
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv 155 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQV 155 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345679999999999999888765522222226777788888888888888888776643
No 66
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=38.41 E-value=2.5e+02 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.3
Q ss_pred cccccccchhhHHHHhh
Q 008549 6 SQYDKIIFVFSKIIYLL 22 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~l 22 (561)
.+|+++.|-++|++.++
T Consensus 237 ~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 237 RAYFKSFWNWLELLIIL 253 (425)
T ss_pred hHHhhhcCcHHHHHHHH
Confidence 57999999999988765
No 67
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=36.48 E-value=45 Score=36.64 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCCC
Q 008549 180 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLS 258 (561)
Q Consensus 180 l~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~ 258 (561)
..|+||++..++--|. ||.|.+..-++..-++-++-.++.+--.+++++.+. -+.+..-++.+++.-++..+-
T Consensus 597 fNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQteIa 669 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTEIA 669 (897)
T ss_pred hHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcceee
Confidence 4789999999999886 899999999999999888887777777778887763 344555666777777665553
No 68
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=35.40 E-value=89 Score=27.84 Aligned_cols=56 Identities=11% Similarity=0.098 Sum_probs=36.6
Q ss_pred cceeeeeCCCcEEEcCCC-ccCEEEEEEEceEEEEEecC-CccccceeeeecCCCCeEecc
Q 008549 325 CVKPTFFTEHAHIIREGD-PIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd-~~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
.+....+.||...-..-. ....+++|++|...+...+. +.+ .....+.+||.+-..
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~---~~~~~l~~GD~~~ip 88 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNK---VYDARLREGDVFVVP 88 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCe---EEEEEecCCCEEEEC
Confidence 344556788887644332 25689999999999886432 222 123678999987543
No 69
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=34.21 E-value=90 Score=34.65 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 231 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il 231 (561)
...++||+-..+..-|-|.-+|.+..-+++.+++.=+.+++.|---+++++++
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 34567777777777777777999999999999998777777777777777765
No 70
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.61 E-value=8.4e+02 Score=28.60 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=13.0
Q ss_pred ccccccchhhHHHHhh
Q 008549 7 QYDKIIFVFSKIIYLL 22 (561)
Q Consensus 7 ~Y~~~~~F~lDlls~l 22 (561)
+|+++.|.++|+.-..
T Consensus 494 ~y~~s~wN~ld~~i~~ 509 (798)
T KOG3599|consen 494 RYVRSKWNWLDLAIVL 509 (798)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 8999999999976443
No 71
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=31.89 E-value=2e+02 Score=27.32 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCcccc-cCCHHHHHHHhhcceeee--eCCCcEEEcCCCccC
Q 008549 287 NIPKELGKKIKRELCWHLLKKVHEFR-MLKEETLDALCDCVKPTF--FTEHAHIIREGDPID 345 (561)
Q Consensus 287 ~Lp~~Lr~~i~~~l~~~~L~~i~lF~-~l~~~~l~~L~~~~~~~~--~~~ge~I~~eGd~~~ 345 (561)
.+|.. ...+...+...+++-.-.|. ..++....+.+....+.. +++|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 35666 33444444444443333333 456667888888999988 999999999999754
No 72
>PRK11171 hypothetical protein; Provisional
Probab=29.21 E-value=1.4e+02 Score=29.79 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=38.3
Q ss_pred cceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 325 CVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+....++||..+-. ......+.++|++|++.+.. +++. ..+.+||++--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~------~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW------VEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE------EEeCCCCEEEE
Confidence 556678999999865 45667799999999999865 3444 56899998644
No 73
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=28.37 E-value=1.1e+02 Score=28.56 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIG 225 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig 225 (561)
-.|..-+|+|++.-||.+-.|+.+.|..=+-....=.+++.++.+.+++
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577889999999999999999999999999999888888888887765
No 74
>PRK06771 hypothetical protein; Provisional
Probab=27.01 E-value=3.2e+02 Score=22.63 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCC
Q 008549 218 LFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNL 257 (561)
Q Consensus 218 ~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l 257 (561)
+.+.|+.-.++.+-+..+.+....+.+++.+.+.+---..
T Consensus 12 ~~~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 12 FGFIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445666777777777888888888888888777654444
No 75
>PRK09108 type III secretion system protein HrcU; Validated
Probab=26.53 E-value=3e+02 Score=28.77 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=49.5
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHHH
Q 008549 199 SGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKK 267 (561)
Q Consensus 199 ~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~ 267 (561)
.+......++.++..++..+..++++-.+..+.-+...-..+.+-.-+++++-+|+..-+++++.|+++
T Consensus 173 ~~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 173 SPPDLAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344455556677777777777777777777777666666676766777888888888888888887753
No 76
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=26.34 E-value=2.1e+02 Score=29.70 Aligned_cols=74 Identities=8% Similarity=0.014 Sum_probs=51.2
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEec
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALT 408 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 408 (561)
+.+++|..--..-..+..+|+|++|+-.... +++. ...++||+|---+. ...+..+.+
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~~------~~W~~gD~f~vPsW--------------~~~~h~a~~ 312 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDAV------FRFSPKDVFVVPSW--------------HPVRFEASD 312 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE--CCEE------EEecCCCEEEECCC--------------CcEecccCC
Confidence 5677777766666777899999999988766 3333 46899999876532 112334456
Q ss_pred ceeEEEeCHHHHHHHH
Q 008549 409 NIEAFTLMADDLKIVF 424 (561)
Q Consensus 409 ~~~ll~i~~~~f~~ll 424 (561)
++.++.++-.-+++-|
T Consensus 313 da~Lf~~~D~Pll~~L 328 (335)
T TIGR02272 313 DAVLFSFSDRPVQQKL 328 (335)
T ss_pred CeEEEEecCHHHHHHh
Confidence 7778888877766654
No 77
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=25.89 E-value=97 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 340 EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 340 eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
--...+++++|++|+..+... +.+ ..+.+||+.|-.
T Consensus 60 ~Hs~edEfv~ILeGE~~l~~d--~~e------~~lrpGD~~gFp 95 (161)
T COG3837 60 WHSAEDEFVYILEGEGTLRED--GGE------TRLRPGDSAGFP 95 (161)
T ss_pred ccccCceEEEEEcCceEEEEC--Cee------EEecCCceeecc
Confidence 334567999999999988763 333 569999998875
No 78
>PRK11171 hypothetical protein; Provisional
Probab=24.70 E-value=1.6e+02 Score=29.39 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=32.4
Q ss_pred eeeeeCCCcEEEcCCC--ccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHIIREGD--PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd--~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....++||...-.... ..+++++|++|.+.+.. ++++ ..+.+||.+=-
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~--~g~~------~~L~~GDsi~~ 113 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL--EGKT------HALSEGGYAYL 113 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 4456778765433322 23689999999999986 3444 57999998643
No 79
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.34 E-value=1.4e+02 Score=24.16 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=41.6
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceE
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 404 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv 404 (561)
.+....+.||..+=...-.+....||++|.... ++ ..+.+|+++=... .+..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~--------~~~~~G~~~~~p~--------------g~~h~~ 78 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD--------GRYGAGDWLRLPP--------------GSSHTP 78 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT--------CEEETTEEEEE-T--------------TEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC--------ccCCCCeEEEeCC--------------CCcccc
Confidence 455677889988876566667888999999872 21 2368888764431 234467
Q ss_pred EEecceeEEE
Q 008549 405 EALTNIEAFT 414 (561)
Q Consensus 405 ~A~~~~~ll~ 414 (561)
.+-++|.++.
T Consensus 79 ~s~~gc~~~v 88 (91)
T PF12973_consen 79 RSDEGCLILV 88 (91)
T ss_dssp EESSCEEEEE
T ss_pred CcCCCEEEEE
Confidence 7788888775
No 80
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.22 E-value=64 Score=21.27 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=18.8
Q ss_pred hhHHhhhccCCCCC-----HHHHHHHHHHh
Q 008549 245 PREIEEWKPFQNLS-----ANLQQEMKKYK 269 (561)
Q Consensus 245 ~~~i~~~m~~~~l~-----~~L~~rv~~y~ 269 (561)
+.++.++++.+++| .+|.+|+.+|+
T Consensus 6 v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 6 VAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 56778888888887 67888888774
No 81
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=23.94 E-value=2e+02 Score=24.39 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHhHHHHHhh---------C-C---CCHHHHHhcCCHHHHHHHHHHHHHH
Q 008549 256 NLSANLQQEMKKYKPYIRRKT---------N-H---IDIENLLNNIPKELGKKIKRELCWH 303 (561)
Q Consensus 256 ~l~~~L~~rv~~y~~~~~~~~---------~-~---~~~~~il~~Lp~~Lr~~i~~~l~~~ 303 (561)
-||.+++.+|..-+...-... . . .-..++|..||+.+|.+|..+....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 478888888855444322110 0 0 1135999999999999998876544
No 82
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=23.93 E-value=3.2e+02 Score=25.81 Aligned_cols=51 Identities=8% Similarity=-0.058 Sum_probs=32.0
Q ss_pred eeeeeCCCcEE---------EcCCCccCEEEEEEEceEEEEEecC-CccccceeeeecCCCCeEe
Q 008549 327 KPTFFTEHAHI---------IREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 327 ~~~~~~~ge~I---------~~eGd~~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~~l~~Gd~FG 381 (561)
-...+.||... +++.....++|+|++|...+...+. |.. ....+.+|+.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~----~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEA----RWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcE----EEEEECCCCEEE
Confidence 34456777753 3333334599999999999876432 221 125689998764
No 83
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=23.73 E-value=7.4e+02 Score=29.25 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 182 CFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 233 (561)
Q Consensus 182 slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~ 233 (561)
-+-||+.-=.+|-- ..|..+.-++.+.++-++++++.|--.+|+++++-+
T Consensus 615 wllwaLvFnnsVpv--~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 615 WLLWALVFNNSVPV--ENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred HHHHHHHhCCCcCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677643333322 345677789999999999999999999999987643
No 84
>PHA02909 hypothetical protein; Provisional
Probab=23.05 E-value=1.9e+02 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 008549 91 LYLQAANVFGGLWYFMAI 108 (561)
Q Consensus 91 ~~~l~~H~~aC~w~~i~~ 108 (561)
+|+-++.++||.+.++++
T Consensus 44 iflsmftilacsyvyiai 61 (72)
T PHA02909 44 IFLSMFTILACSYVYIAI 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344467889999988884
No 85
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.90 E-value=1e+03 Score=26.04 Aligned_cols=85 Identities=14% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHH-HH----HHHHhhCcccccCCHHHHHHHhhcceeeee-----
Q 008549 262 QQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRE-LC----WHLLKKVHEFRMLKEETLDALCDCVKPTFF----- 331 (561)
Q Consensus 262 ~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~-l~----~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~----- 331 (561)
..-++.|..|+ ..|..|+..+..- .| ......-...+.||+....+++..++..++
T Consensus 249 mDGiK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~i 314 (536)
T KOG0500|consen 249 MDGIKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRI 314 (536)
T ss_pred HHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhH
Confidence 34566777665 3888898876542 22 223333445566777777776655543322
Q ss_pred --------------CCCcEEEcCCCccCEEEEEEEceEE--EEEecCCcc
Q 008549 332 --------------TEHAHIIREGDPIDELIFVMQGNLW--TYSFNDLTN 365 (561)
Q Consensus 332 --------------~~ge~I~~eGd~~~~lyfI~~G~V~--v~~~~~g~~ 365 (561)
+-...+|.+|| |+..+|.+. ++.-..|+-
T Consensus 315 F~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMyIVk~G~L 359 (536)
T KOG0500|consen 315 FQDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMYIVKEGKL 359 (536)
T ss_pred HHhcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEEEEEccEE
Confidence 23345788888 889999884 555455543
No 86
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=22.78 E-value=2e+02 Score=26.05 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=35.5
Q ss_pred cceeeeeCCCcEE-EcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeE
Q 008549 325 CVKPTFFTEHAHI-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 325 ~~~~~~~~~ge~I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~F 380 (561)
..+.....||..+ ++........+.|++|.+.+... ++. ..+.+|+.+
T Consensus 64 ~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~--~~~------~~~~~g~sv 112 (151)
T PF01050_consen 64 KVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD--DEE------FTLKEGDSV 112 (151)
T ss_pred EEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC--CEE------EEEcCCCEE
Confidence 3566678899888 55566678899999999999863 333 467888765
No 87
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.13 E-value=4.1e+02 Score=27.73 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=46.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHHH
Q 008549 200 GSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKK 267 (561)
Q Consensus 200 p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~ 267 (561)
+......+...+..+++.++.++++-.+....-+...-..+.+-.-+++++-.|+..-+++++.|+++
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 172 AACGLPVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 34444556666666676666666666666666666666666666667888888888888888877753
No 88
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=22.05 E-value=1.4e+02 Score=24.17 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=21.2
Q ss_pred CEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 345 DELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 345 ~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.-.++|++|.|++...+ .+ ..+.+|+.|=-
T Consensus 34 ~~vF~V~~G~v~Vti~~--~~------f~v~~G~~F~V 63 (85)
T PF11699_consen 34 TMVFYVIKGKVEVTIHE--TS------FVVTKGGSFQV 63 (85)
T ss_dssp EEEEEEEESEEEEEETT--EE------EEEETT-EEEE
T ss_pred EEEEEEEeCEEEEEEcC--cE------EEEeCCCEEEE
Confidence 35899999999998742 22 46888888743
No 89
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.29 E-value=4.3e+02 Score=28.02 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=43.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHH
Q 008549 200 GSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMK 266 (561)
Q Consensus 200 p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~ 266 (561)
|......+..++..++..++.++++-.+..++-+...-..+++-.-+++++-+|+..-+++++.|++
T Consensus 179 ~~~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~R 245 (386)
T PRK12468 179 PVAALGDALHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIR 245 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 3333344444555555555555555566666666666666666667788888888888888888775
No 90
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.84 E-value=2.1e+02 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=34.5
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecC-CccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-LTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~-g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||...-.---...++.+|++|.+++...+. ++.. ...+.+||++=-
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~----~~~L~~GD~~~f 122 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY----IDDVGAGDLWYF 122 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE----EeEECCCCEEEE
Confidence 3445677777653222234689999999999987543 4431 136999998744
No 91
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.73 E-value=7e+02 Score=29.05 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.2
Q ss_pred cccccccchhhHHHHhhc
Q 008549 6 SQYDKIIFVFSKIIYLLC 23 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~lP 23 (561)
..|++..|=++|++.+.=
T Consensus 411 ~~y~~~~Wn~lDf~m~si 428 (822)
T KOG3609|consen 411 DGYLAFWWNWLDFAMISI 428 (822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468899999999876543
No 92
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=20.22 E-value=1.2e+02 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHhHHHHHh
Q 008549 255 QNLSANLQQEMKKYKPYIRRK 275 (561)
Q Consensus 255 ~~l~~~L~~rv~~y~~~~~~~ 275 (561)
.++|++|.+.+.+|.+|..+.
T Consensus 9 qkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 9 QKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHCcHHHHHHHHHHHHHHHHH
Confidence 589999999999999998864
No 93
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=20.02 E-value=1.1e+02 Score=32.78 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=33.8
Q ss_pred CCCeEeccchhhhhcccCccccccccceEEEe-cceeEEEeCHHHHHHHHHhc
Q 008549 376 DSDFYGAELVDWALRDCSLFEFSKSTKTIEAL-TNIEAFTLMADDLKIVFNEK 427 (561)
Q Consensus 376 ~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~-~~~~ll~i~~~~f~~ll~~~ 427 (561)
+||-||..++. +..|+.+++... .+|..+..++.+|..++.+.
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 58899998652 444777777665 45999999999999999873
No 94
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=20.01 E-value=1.3e+02 Score=31.94 Aligned_cols=43 Identities=14% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhcccCcc--cccCCchhhHHHHHHHHHHHHH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDL--QSGSDVWENIFVILVVSSGFLF 219 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGD--i~p~t~~E~~~~i~~~l~G~~~ 219 (561)
.....+.+.++++++|.|+.- ...-+..=.++.+++|++|+..
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 456778888999999999873 3333444456777778887654
Done!