Query 008549
Match_columns 561
No_of_seqs 380 out of 2893
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 1.9E-35 6.5E-40 307.6 11.7 192 176-443 159-350 (355)
2 2ptm_A Hyperpolarization-activ 100.0 4.1E-31 1.4E-35 251.7 20.3 194 233-442 2-195 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 8.3E-31 2.8E-35 250.4 20.6 195 232-443 2-196 (202)
4 3ukn_A Novel protein similar t 100.0 1.9E-31 6.3E-36 256.9 13.8 198 228-442 1-200 (212)
5 4f8a_A Potassium voltage-gated 99.8 7.3E-20 2.5E-24 166.8 15.8 144 281-438 5-148 (160)
6 3fx3_A Cyclic nucleotide-bindi 99.8 3.8E-19 1.3E-23 173.3 15.3 175 301-491 9-187 (237)
7 3dn7_A Cyclic nucleotide bindi 99.8 4.4E-19 1.5E-23 167.3 14.0 151 302-464 6-161 (194)
8 3d0s_A Transcriptional regulat 99.8 9.2E-20 3.1E-24 176.4 9.4 177 302-490 5-185 (227)
9 4ev0_A Transcription regulator 99.8 6.1E-19 2.1E-23 169.1 11.6 165 305-488 1-169 (216)
10 2gau_A Transcriptional regulat 99.8 1.2E-18 4.1E-23 169.1 12.1 171 307-490 14-188 (232)
11 3e97_A Transcriptional regulat 99.8 6.3E-19 2.1E-23 171.0 10.0 174 302-490 5-183 (231)
12 1zyb_A Transcription regulator 99.8 2.1E-18 7.2E-23 167.8 13.2 170 302-489 17-193 (232)
13 3mdp_A Cyclic nucleotide-bindi 99.8 3.7E-18 1.3E-22 152.1 13.6 132 302-445 5-140 (142)
14 1orq_C Potassium channel; volt 99.8 1.2E-18 4.1E-23 168.9 11.0 56 178-233 165-220 (223)
15 3gyd_A CNMP-BD protein, cyclic 99.8 1.3E-17 4.5E-22 156.8 16.8 148 281-440 13-165 (187)
16 3dkw_A DNR protein; CRP-FNR, H 99.8 1E-18 3.4E-23 168.9 9.2 174 302-490 8-186 (227)
17 3iwz_A CAP-like, catabolite ac 99.8 4.4E-18 1.5E-22 164.7 13.5 175 302-488 10-193 (230)
18 3dv8_A Transcriptional regulat 99.8 3.9E-18 1.3E-22 163.9 12.4 155 303-469 3-163 (220)
19 2fmy_A COOA, carbon monoxide o 99.7 7.7E-19 2.6E-23 169.2 7.0 170 303-491 4-176 (220)
20 1ft9_A Carbon monoxide oxidati 99.7 8.7E-19 3E-23 169.1 6.5 169 304-491 1-172 (222)
21 2pqq_A Putative transcriptiona 99.7 2.9E-17 1E-21 147.3 15.7 132 302-445 4-136 (149)
22 3ocp_A PRKG1 protein; serine/t 99.7 8.9E-18 3E-22 149.6 11.8 131 287-433 7-137 (139)
23 2z69_A DNR protein; beta barre 99.7 5.2E-17 1.8E-21 146.7 15.2 129 302-442 11-141 (154)
24 1vp6_A CNBD, cyclic-nucleotide 99.7 3.6E-17 1.2E-21 145.1 13.6 125 301-443 9-133 (138)
25 3idb_B CAMP-dependent protein 99.7 1.5E-17 5.3E-22 152.0 11.4 124 298-433 33-156 (161)
26 3ryp_A Catabolite gene activat 99.7 2.1E-17 7.3E-22 157.5 12.1 169 309-489 2-174 (210)
27 2oz6_A Virulence factor regula 99.7 5.8E-17 2E-21 154.1 13.5 162 314-487 1-169 (207)
28 1o5l_A Transcriptional regulat 99.7 5.6E-17 1.9E-21 155.5 12.3 167 307-491 3-173 (213)
29 3e6c_C CPRK, cyclic nucleotide 99.7 2.7E-17 9.1E-22 161.7 9.6 173 304-491 10-186 (250)
30 1wgp_A Probable cyclic nucleot 99.7 4E-17 1.4E-21 144.7 8.1 126 303-431 6-133 (137)
31 3kcc_A Catabolite gene activat 99.7 1.7E-16 5.7E-21 157.2 11.9 167 311-489 54-224 (260)
32 3pna_A CAMP-dependent protein 99.7 6E-16 2.1E-20 140.3 13.9 117 300-432 35-151 (154)
33 3la7_A Global nitrogen regulat 99.7 4.1E-16 1.4E-20 152.7 11.9 166 316-491 30-202 (243)
34 2r9r_B Paddle chimera voltage 99.7 1.1E-16 3.8E-21 173.1 8.4 60 177-236 374-433 (514)
35 4ava_A Lysine acetyltransferas 99.6 1.7E-15 5.8E-20 155.3 15.8 128 302-443 12-140 (333)
36 2bgc_A PRFA; bacterial infecti 99.6 6E-16 2.1E-20 150.9 11.2 165 312-489 2-176 (238)
37 3shr_A CGMP-dependent protein 99.6 1.3E-15 4.4E-20 153.7 13.1 134 299-444 153-288 (299)
38 3shr_A CGMP-dependent protein 99.6 2.3E-15 7.7E-20 151.9 14.5 133 285-433 21-153 (299)
39 2a9h_A Voltage-gated potassium 99.6 1E-15 3.5E-20 138.6 9.3 61 177-237 83-143 (155)
40 2d93_A RAP guanine nucleotide 99.6 4.3E-16 1.5E-20 137.8 6.3 114 299-428 12-127 (134)
41 2qcs_B CAMP-dependent protein 99.6 2.9E-14 1E-18 142.9 15.7 126 299-440 35-160 (291)
42 3of1_A CAMP-dependent protein 99.6 1.2E-14 4E-19 141.7 12.1 119 302-436 6-124 (246)
43 3tnp_B CAMP-dependent protein 99.6 2.5E-14 8.4E-19 151.4 14.6 123 298-432 140-262 (416)
44 2qcs_B CAMP-dependent protein 99.6 4.8E-14 1.6E-18 141.3 16.0 126 300-437 154-281 (291)
45 2ih3_C Voltage-gated potassium 99.6 1.4E-14 4.8E-19 126.2 10.3 59 178-236 61-119 (122)
46 3of1_A CAMP-dependent protein 99.6 2.3E-14 7.7E-19 139.7 13.1 117 300-431 122-238 (246)
47 4h33_A LMO2059 protein; bilaye 99.5 3.1E-15 1.1E-19 132.9 5.3 92 179-270 44-135 (137)
48 3b02_A Transcriptional regulat 99.5 1.2E-14 4.2E-19 137.1 8.8 142 329-490 2-147 (195)
49 4din_B CAMP-dependent protein 99.5 3.6E-14 1.2E-18 148.4 12.8 129 299-438 244-373 (381)
50 3vou_A ION transport 2 domain 99.5 5.7E-14 1.9E-18 126.7 12.2 86 179-264 53-148 (148)
51 4din_B CAMP-dependent protein 99.5 5.9E-14 2E-18 146.8 13.5 124 299-438 126-249 (381)
52 3tnp_B CAMP-dependent protein 99.5 5.3E-14 1.8E-18 148.9 11.1 129 302-442 266-401 (416)
53 1o7f_A CAMP-dependent RAP1 gua 99.5 8.4E-14 2.9E-18 149.4 12.0 137 288-435 27-164 (469)
54 1o7f_A CAMP-dependent RAP1 gua 99.4 2.4E-13 8.1E-18 145.9 11.6 123 300-437 334-458 (469)
55 2zcw_A TTHA1359, transcription 99.4 7.4E-14 2.5E-18 132.3 5.4 147 322-489 1-153 (202)
56 4f7z_A RAP guanine nucleotide 99.4 1.8E-12 6.2E-17 151.8 14.3 123 299-431 38-160 (999)
57 3eff_K Voltage-gated potassium 99.4 5.8E-13 2E-17 118.9 7.7 58 178-235 40-97 (139)
58 3cf6_E RAP guanine nucleotide 99.3 2.8E-12 9.7E-17 143.5 11.3 132 283-430 13-146 (694)
59 2q67_A Potassium channel prote 99.3 3.4E-11 1.2E-15 103.2 11.4 57 179-235 50-106 (114)
60 4f7z_A RAP guanine nucleotide 99.2 2.8E-11 9.4E-16 141.8 14.2 113 299-426 333-447 (999)
61 2k1e_A Water soluble analogue 99.2 2.1E-12 7.1E-17 108.9 2.0 59 178-236 40-98 (103)
62 3ldc_A Calcium-gated potassium 99.1 9.9E-11 3.4E-15 94.2 7.5 53 179-231 29-81 (82)
63 3ouf_A Potassium channel prote 99.1 1.2E-10 4.2E-15 96.8 7.7 56 179-234 33-88 (97)
64 3rvy_A ION transport protein; 99.0 7.8E-10 2.7E-14 110.7 9.0 61 175-235 177-243 (285)
65 3pjs_K KCSA, voltage-gated pot 99.0 1.7E-11 5.9E-16 112.5 -3.4 59 179-237 68-126 (166)
66 1xl4_A Inward rectifier potass 98.9 3.8E-09 1.3E-13 105.9 9.8 54 178-231 82-135 (301)
67 1p7b_A Integral membrane chann 98.8 1.9E-09 6.5E-14 109.2 5.2 54 179-232 97-150 (333)
68 3um7_A Potassium channel subfa 98.8 7.7E-09 2.6E-13 103.3 9.0 57 178-234 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 1.8E-08 6.2E-13 101.7 7.7 56 178-233 78-133 (321)
70 4gx0_A TRKA domain protein; me 98.7 4.8E-08 1.6E-12 107.2 10.8 55 179-233 52-107 (565)
71 3ukm_A Potassium channel subfa 98.6 8.6E-08 2.9E-12 94.3 7.9 55 178-232 93-147 (280)
72 3sya_A G protein-activated inw 98.6 1.7E-07 5.7E-12 94.8 9.9 56 179-234 92-149 (340)
73 3um7_A Potassium channel subfa 98.5 3.3E-08 1.1E-12 98.7 4.2 57 179-235 225-287 (309)
74 3ukm_A Potassium channel subfa 98.5 8.9E-08 3.1E-12 94.2 6.3 56 179-234 202-264 (280)
75 3spc_A Inward-rectifier K+ cha 98.4 6.9E-07 2.3E-11 90.4 10.3 55 178-232 94-150 (343)
76 1lnq_A MTHK channels, potassiu 98.3 3.5E-08 1.2E-12 101.0 -2.0 55 180-234 47-101 (336)
77 4dxw_A Navrh, ION transport pr 97.8 4.3E-05 1.5E-09 73.4 9.1 52 178-229 165-221 (229)
78 2kyh_A KVAP, voltage-gated pot 92.1 0.064 2.2E-06 47.4 2.3 21 6-28 80-100 (147)
79 1ors_C Potassium channel; volt 90.7 0.1 3.6E-06 45.0 2.3 21 6-28 65-85 (132)
80 3rns_A Cupin 2 conserved barre 76.1 9.3 0.00032 35.7 8.8 69 325-415 38-106 (227)
81 3fjs_A Uncharacterized protein 76.0 12 0.00041 30.6 8.5 67 326-414 38-104 (114)
82 3kg2_A Glutamate receptor 2; I 74.9 2.4 8.2E-05 47.7 5.0 72 177-254 562-633 (823)
83 2ozj_A Cupin 2, conserved barr 72.0 16 0.00055 29.5 8.3 45 330-382 44-88 (114)
84 3lwc_A Uncharacterized protein 67.9 11 0.00037 31.4 6.3 46 328-382 44-89 (119)
85 1yhf_A Hypothetical protein SP 66.2 29 0.00098 27.8 8.6 49 326-382 42-90 (115)
86 2pfw_A Cupin 2, conserved barr 62.9 33 0.0011 27.5 8.4 68 326-415 36-103 (116)
87 2gu9_A Tetracenomycin polyketi 55.0 23 0.00079 28.1 6.0 49 326-382 23-74 (113)
88 1v70_A Probable antibiotics sy 54.1 27 0.00091 27.1 6.2 47 327-381 31-78 (105)
89 4e2g_A Cupin 2 conserved barre 52.1 23 0.00078 29.0 5.6 49 326-382 43-91 (126)
90 1yfu_A 3-hydroxyanthranilate-3 51.7 18 0.0006 32.3 4.9 36 343-382 54-89 (174)
91 3rns_A Cupin 2 conserved barre 50.0 41 0.0014 31.1 7.7 68 325-414 154-222 (227)
92 1o5u_A Novel thermotoga mariti 49.6 49 0.0017 26.4 7.0 48 326-382 33-80 (101)
93 1dgw_A Canavalin; duplicated s 48.7 18 0.00062 32.3 4.7 53 326-382 43-95 (178)
94 3jzv_A Uncharacterized protein 45.3 60 0.002 28.5 7.6 46 329-382 58-103 (166)
95 3ibm_A Cupin 2, conserved barr 44.0 35 0.0012 30.0 5.8 48 327-382 59-106 (167)
96 3h8u_A Uncharacterized conserv 43.2 29 0.00099 28.3 4.9 49 326-381 41-90 (125)
97 1zvf_A 3-hydroxyanthranilate 3 43.1 21 0.00072 31.8 4.0 37 343-382 53-92 (176)
98 2fqp_A Hypothetical protein BP 42.9 11 0.00039 29.6 2.2 50 327-382 21-71 (97)
99 2qnk_A 3-hydroxyanthranilate 3 41.6 43 0.0015 32.2 6.2 38 341-382 48-85 (286)
100 2bnm_A Epoxidase; oxidoreducta 41.0 30 0.001 31.0 5.0 49 330-382 123-174 (198)
101 3es4_A Uncharacterized protein 40.7 32 0.0011 28.5 4.6 47 329-383 47-93 (116)
102 3bcw_A Uncharacterized protein 38.6 25 0.00084 29.4 3.6 47 329-383 54-100 (123)
103 3i7d_A Sugar phosphate isomera 38.4 33 0.0011 30.0 4.7 48 327-382 46-95 (163)
104 4i4a_A Similar to unknown prot 38.3 49 0.0017 27.0 5.6 77 328-426 38-118 (128)
105 3lag_A Uncharacterized protein 38.2 10 0.00036 30.2 1.2 51 326-381 19-70 (98)
106 3kgz_A Cupin 2 conserved barre 38.1 32 0.0011 29.9 4.5 45 329-381 49-93 (156)
107 3d82_A Cupin 2, conserved barr 38.0 64 0.0022 24.8 6.0 51 344-416 50-100 (102)
108 1y9q_A Transcriptional regulat 37.8 60 0.002 28.8 6.5 46 329-382 109-156 (192)
109 2b8m_A Hypothetical protein MJ 37.7 37 0.0013 27.4 4.6 46 329-382 32-78 (117)
110 3l2h_A Putative sugar phosphat 37.5 34 0.0011 29.6 4.6 46 327-380 49-96 (162)
111 3d0j_A Uncharacterized protein 37.5 32 0.0011 29.5 4.1 44 339-382 45-88 (140)
112 2vpv_A Protein MIF2, MIF2P; nu 37.3 28 0.00096 30.9 4.0 32 343-382 109-140 (166)
113 1sfn_A Conserved hypothetical 36.3 47 0.0016 31.2 5.7 52 324-383 165-217 (246)
114 1o4t_A Putative oxalate decarb 35.5 45 0.0015 27.8 4.9 47 327-381 60-107 (133)
115 1sfn_A Conserved hypothetical 35.2 1.1E+02 0.0038 28.5 8.2 45 328-382 54-98 (246)
116 3es1_A Cupin 2, conserved barr 34.6 36 0.0012 30.4 4.2 48 326-380 81-128 (172)
117 2opk_A Hypothetical protein; p 34.6 40 0.0014 27.2 4.3 35 342-382 51-85 (112)
118 2q30_A Uncharacterized protein 34.5 1.3E+02 0.0044 23.3 7.5 48 328-382 37-86 (110)
119 2pyt_A Ethanolamine utilizatio 34.3 37 0.0013 28.6 4.2 46 328-383 61-106 (133)
120 1vj2_A Novel manganese-contain 33.3 40 0.0014 27.8 4.2 46 328-381 52-97 (126)
121 4axo_A EUTQ, ethanolamine util 33.2 41 0.0014 29.3 4.3 32 343-382 83-114 (151)
122 3nw4_A Gentisate 1,2-dioxygena 33.1 79 0.0027 31.8 6.9 76 327-424 282-357 (368)
123 2i45_A Hypothetical protein; n 31.9 55 0.0019 25.8 4.7 68 331-419 35-102 (107)
124 1lr5_A Auxin binding protein 1 31.7 40 0.0014 29.2 4.1 55 328-382 45-100 (163)
125 3bu7_A Gentisate 1,2-dioxygena 31.2 43 0.0015 34.1 4.7 49 327-383 297-345 (394)
126 4b29_A Dimethylsulfoniopropion 31.0 65 0.0022 29.8 5.4 46 331-383 139-184 (217)
127 2q1z_B Anti-sigma factor CHRR, 31.0 93 0.0032 28.0 6.6 65 325-415 126-192 (195)
128 3h7j_A Bacilysin biosynthesis 30.8 68 0.0023 29.9 5.8 47 326-380 36-82 (243)
129 1sq4_A GLXB, glyoxylate-induce 30.4 69 0.0024 30.7 5.9 51 324-382 191-242 (278)
130 1fi2_A Oxalate oxidase, germin 30.1 1.1E+02 0.0036 27.6 6.9 54 326-382 74-131 (201)
131 3cew_A Uncharacterized cupin p 29.8 49 0.0017 27.0 4.2 47 327-381 29-77 (125)
132 4e2q_A Ureidoglycine aminohydr 29.4 73 0.0025 30.5 5.7 69 327-416 73-141 (266)
133 1uij_A Beta subunit of beta co 28.1 50 0.0017 33.8 4.6 54 325-382 50-103 (416)
134 1sef_A Conserved hypothetical 27.9 75 0.0026 30.2 5.7 49 326-382 184-233 (274)
135 2ea7_A 7S globulin-1; beta bar 27.8 51 0.0017 34.0 4.6 55 324-382 61-115 (434)
136 3bu7_A Gentisate 1,2-dioxygena 27.3 44 0.0015 34.0 4.0 49 327-382 126-174 (394)
137 3ht1_A REMF protein; cupin fol 27.2 46 0.0016 27.8 3.6 47 330-382 45-91 (145)
138 2xp1_A SPT6; transcription, IW 26.8 80 0.0027 28.2 5.2 39 306-350 12-50 (178)
139 2f4p_A Hypothetical protein TM 26.5 82 0.0028 26.7 5.1 48 328-382 52-99 (147)
140 2cav_A Protein (canavalin); vi 26.3 58 0.002 33.7 4.7 54 325-382 87-140 (445)
141 2d40_A Z3393, putative gentisa 25.5 1.4E+02 0.0048 29.6 7.4 73 328-422 272-344 (354)
142 3h7j_A Bacilysin biosynthesis 25.2 75 0.0026 29.6 5.0 48 328-383 149-197 (243)
143 2oa2_A BH2720 protein; 1017534 23.7 1.1E+02 0.0038 25.8 5.4 52 328-381 47-99 (148)
144 2vqa_A SLL1358 protein, MNCA; 23.7 98 0.0033 30.6 5.8 53 326-382 54-108 (361)
145 1y3t_A Hypothetical protein YX 23.3 1.1E+02 0.0038 29.7 6.0 48 327-382 49-97 (337)
146 2o1q_A Putative acetyl/propion 23.1 72 0.0025 27.2 4.1 53 325-383 45-97 (145)
147 1j58_A YVRK protein; cupin, de 22.7 92 0.0031 31.1 5.4 52 326-381 81-133 (385)
148 2vqa_A SLL1358 protein, MNCA; 22.4 1.3E+02 0.0043 29.7 6.4 53 326-382 236-290 (361)
149 1sq4_A GLXB, glyoxylate-induce 22.0 71 0.0024 30.6 4.2 47 328-382 72-120 (278)
150 4e2q_A Ureidoglycine aminohydr 22.0 1.2E+02 0.0041 28.9 5.7 52 323-382 185-237 (266)
151 1j58_A YVRK protein; cupin, de 21.8 1.2E+02 0.0041 30.2 6.1 53 326-382 259-313 (385)
152 2o8q_A Hypothetical protein; c 21.5 95 0.0033 25.4 4.5 31 345-382 65-95 (134)
153 1rc6_A Hypothetical protein YL 21.5 70 0.0024 30.2 4.0 47 328-382 63-111 (261)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.9e-35 Score=307.65 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCC
Q 008549 176 LQKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQ 255 (561)
Q Consensus 176 ~~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~ 255 (561)
+..|..|+||+++||||+||||+.|.|..++++++++|++|.+++++++|.+++.+.+...++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~----------------- 221 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRG----------------- 221 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 456889999999999999999999999999999999999999999999999987765421110
Q ss_pred CCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCc
Q 008549 256 NLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHA 335 (561)
Q Consensus 256 ~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge 335 (561)
++. .+.+.++++|+|+++++++++.++..++.+.|+|||
T Consensus 222 -----------~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 222 -----------DFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp -----------HHH------------------------------HHHC--------------------------------
T ss_pred -----------hhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 000 024578889999999999999999999999999999
Q ss_pred EEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEe
Q 008549 336 HIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTL 415 (561)
Q Consensus 336 ~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i 415 (561)
.|+++||+++++|||.+|.|+++..+ + ..+++|++||+.+++ . ..+++++++|.++|+++.|
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~---~------~~l~~G~~fGe~~~l---~------~~~~~~~~~A~~~~~l~~i 322 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN---P------VELGPGAFFGEMALI---S------GEPRSATVSAATTVSLLSL 322 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC---e------eEECCCCEEeehHHh---C------CCCcceEEEECccEEEEEE
Confidence 99999999999999999999998654 2 468999999999652 2 2378899999999999999
Q ss_pred CHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 008549 416 MADDLKIVFNEKMNQAALVIQLAWRHYT 443 (561)
Q Consensus 416 ~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 443 (561)
++++|.++++++|++...+.+.+.+|++
T Consensus 323 ~~~~f~~ll~~~p~~~~~l~~~l~~rl~ 350 (355)
T 3beh_A 323 HSADFQMLCSSSPEIAEIFRKTALERRG 350 (355)
T ss_dssp ----------------------------
T ss_pred eHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777664
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=4.1e-31 Score=251.66 Aligned_cols=194 Identities=16% Similarity=0.266 Sum_probs=177.6
Q ss_pred HHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCcccc
Q 008549 233 SRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEFR 312 (561)
Q Consensus 233 ~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~ 312 (561)
+++++..+|+++|+.+++||+.++||.+|+.||++||+|.|+ .++.+++++++.||+.||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567889999999999999999999999999999999999997 5789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhccc
Q 008549 313 MLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDC 392 (561)
Q Consensus 313 ~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~ 392 (561)
+++++++..++..++.+.|+||++|+++||.++.+|||.+|.|+++.. +|+ . +..+++|++||+.+++ .+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~-~g~-~----~~~l~~G~~fGe~~~~---~~- 150 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMS-DGV-I----ATSLSDGSYFGEICLL---TR- 150 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECT-TSC-E----EEEECTTCEESCHHHH---HS-
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEec-CCe-E----EEEecCCCEechHHHc---CC-
Confidence 999999999999999999999999999999999999999999999873 343 2 4789999999998763 22
Q ss_pred CccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 393 SLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 393 ~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
.+++++++|.++|+++.|++++|.++++++|.+...+.+.+.+|+
T Consensus 151 -----~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 151 -----ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp -----SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred -----CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 278899999999999999999999999999999998888776654
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=8.3e-31 Score=250.44 Aligned_cols=195 Identities=18% Similarity=0.262 Sum_probs=177.9
Q ss_pred HHHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhhCccc
Q 008549 232 QSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKKVHEF 311 (561)
Q Consensus 232 ~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF 311 (561)
++++++..+|+++|+.+++||+.++||.+|+.||++||+|.|. .++.+++++++.||+.||.++..+++.++|+++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4678899999999999999999999999999999999999997 578999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcc
Q 008549 312 RMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRD 391 (561)
Q Consensus 312 ~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~ 391 (561)
.+++++++..++..++...|+||++|+++||+++.+|||.+|.|+++.. +|++ ..+++|++||+.+++ .+
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~g~~------~~l~~G~~fGe~~~~---~~ 150 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNKE------MKLSDGSYFGEICLL---TR 150 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT-TSCC------EEEETTCEECHHHHH---HC
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC-CCeE------EEEcCCCEeccHHHh---cC
Confidence 9999999999999999999999999999999999999999999999853 4444 468999999998763 22
Q ss_pred cCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 008549 392 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 443 (561)
Q Consensus 392 ~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 443 (561)
.+++++++|.++|+++.|++++|.++++++|.+...+.+.+..|+.
T Consensus 151 ------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (202)
T 3bpz_A 151 ------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLD 196 (202)
T ss_dssp ------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred ------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 2788999999999999999999999999999999999988877764
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.9e-31 Score=256.85 Aligned_cols=198 Identities=21% Similarity=0.267 Sum_probs=173.1
Q ss_pred HHHHHHHhHHHHHHhcchhHHhhhccCCCCCHHHHHHHHHHhHHHHHhhCCCCHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 008549 228 QIYLQSRTVRLKEMTVKPREIEEWKPFQNLSANLQQEMKKYKPYIRRKTNHIDIENLLNNIPKELGKKIKRELCWHLLKK 307 (561)
Q Consensus 228 ~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~l~~~~L~~ 307 (561)
++|+++++++..+|+++|+.+++||+.++||++|+.||++||+|.|..+++.+++++++.||+.||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999988776 8
Q ss_pred CcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhh
Q 008549 308 VHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDW 387 (561)
Q Consensus 308 i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~ 387 (561)
+|+|++++++++..++..++.+.|+||++|+++||.++.+|||.+|.|+++. +| . ++..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~-~----~~~~l~~G~~fGe~~~~- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN-T----VLAILGKGDLIGSDSLT- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS-C----EEEEECTTCEEECSCCS-
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC-e----EEEEecCCCCcCcHHhc-
Confidence 9999999999999999999999999999999999999999999999999986 22 2 35889999999998652
Q ss_pred hhcccCccccc--cccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 388 ALRDCSLFEFS--KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 388 ~l~~~~~~~~~--~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
... +++++++|.++|+++.|++++|.++++++|.+...+.+.+.+++
T Consensus 152 --------~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 152 --------KEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp --------SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred --------cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 222 68899999999999999999999999999999999988877665
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.83 E-value=7.3e-20 Score=166.82 Aligned_cols=144 Identities=21% Similarity=0.253 Sum_probs=120.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe
Q 008549 281 IENLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF 360 (561)
Q Consensus 281 ~~~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~ 360 (561)
.+++++.||+.||.++..+++.++|+++|+|++++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHH
Q 008549 361 NDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 438 (561)
Q Consensus 361 ~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~ 438 (561)
+ .++..+++|++||+.+++ .+ ...+++++++|.++|+++.|++++|.++++++|.+...+.+.+
T Consensus 85 --~-----~~~~~~~~G~~fG~~~~~---~~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D-----EVVAILGKGDVFGDVFWK---EA----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T-----EEEEEEETTCEEECCTTT---CS----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C-----EEEEEecCCCEeCcHHHh---cC----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 235889999999998652 11 1137889999999999999999999999999999988877543
No 6
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.80 E-value=3.8e-19 Score=173.26 Aligned_cols=175 Identities=9% Similarity=0.089 Sum_probs=146.4
Q ss_pred HHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCe
Q 008549 301 CWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDF 379 (561)
Q Consensus 301 ~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~ 379 (561)
..++|+++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++ .++.++++|++
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G~~ 85 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSE---AVVSVFTRGES 85 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCE---EEEEEEETTEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE---EEEEEeCCCCE
Confidence 4678999999999999999999999999999999999999999999999999999999753 5555 35789999999
Q ss_pred EeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCC
Q 008549 380 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSP 456 (561)
Q Consensus 380 FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~e 456 (561)
||+.+++ .+ .+++++++|.++|+++.|++++|.+++.++|.+...+.+.+.+++ .++........+++
T Consensus 86 ~G~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 156 (237)
T 3fx3_A 86 FGEAVAL---RN------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQ 156 (237)
T ss_dssp ECHHHHH---HT------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred echHHHh---cC------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 9998763 22 278889999999999999999999999999999999988887776 44667788888999
Q ss_pred CchhhHhhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 457 LYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 457 r~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
|++.++..+....+ .+.....|+||+|--+.
T Consensus 157 Rl~~~L~~~~~~~~----~~~~~~l~~t~~~iA~~ 187 (237)
T 3fx3_A 157 RVAEFLLELCDCDT----GACEVTLPYDKMLIAGR 187 (237)
T ss_dssp HHHHHHHHHCCC---------EEECCSCTHHHHHH
T ss_pred HHHHHHHHHhhhcC----CCeEEEecCCHHHHHHH
Confidence 99988887765433 34567778888665443
No 7
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.80 E-value=4.4e-19 Score=167.33 Aligned_cols=151 Identities=11% Similarity=0.142 Sum_probs=121.6
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~F 380 (561)
..+++.++.|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++.. .+|++ .++.++++|++|
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e---~~~~~~~~g~~~ 82 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIE---QTTQFAIENWWL 82 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE---EEEEEEETTCEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCE---EEEEEccCCcEE
Confidence 45788899999999999999999999999999999999999999999999999999975 35666 457899999999
Q ss_pred ecc-chhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCC
Q 008549 381 GAE-LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSP 456 (561)
Q Consensus 381 Ge~-~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~e 456 (561)
|+. ++ +.+ .+++++++|+++|+++.|++++|.++++++|.+...+.+.+.+++ .++.......++++
T Consensus 83 ge~~~~---~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 153 (194)
T 3dn7_A 83 SDYMAF---QKQ------QPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEE 153 (194)
T ss_dssp CCHHHH---HHT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred eehHHH---hcC------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 987 43 222 278889999999999999999999999999999999888887766 45666777888999
Q ss_pred CchhhHhh
Q 008549 457 LYVPLRDK 464 (561)
Q Consensus 457 r~~~~~~~ 464 (561)
|++.++..
T Consensus 154 Rl~~~L~~ 161 (194)
T 3dn7_A 154 QYHNFSSR 161 (194)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 99888654
No 8
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.79 E-value=9.2e-20 Score=176.44 Aligned_cols=177 Identities=14% Similarity=0.180 Sum_probs=150.2
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~ 81 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE---NLLTIMGPSDMF 81 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEEecCCCEE
Confidence 457899999999999999999999999999999999999999999999999999999764 4555 356899999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCC
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPL 457 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er 457 (561)
|+.+++ .+ .+++++++|.++|+++.|++++|.++++++|.+...+.+.+..++ .++.......++.+|
T Consensus 82 G~~~~~---~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R 152 (227)
T 3d0s_A 82 GELSIF---DP------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGR 152 (227)
T ss_dssp SCHHHH---SC------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred eeHHHc---CC------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 998662 22 278889999999999999999999999999999999998887776 345556777889999
Q ss_pred chhhHhhhhhhCCCCCCCcceeccCCCCCCccc
Q 008549 458 YVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKVK 490 (561)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~ 490 (561)
++.++..+....+.+...+..+..|+||+|--+
T Consensus 153 l~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~ 185 (227)
T 3d0s_A 153 VAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQ 185 (227)
T ss_dssp HHHHHHHHHHHHEEEETTEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHH
Confidence 999888887776665555556777888876443
No 9
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.78 E-value=6.1e-19 Score=169.05 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=134.6
Q ss_pred HhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEecc
Q 008549 305 LKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 305 L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
|+++|+|+++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++ .++..+++|++||+.
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~G~~ 77 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQE---RTLALLGPGELFGEM 77 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCE---EEEEEECTTCEECHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEEeeh
Confidence 46899999999999999999999999999999999999999999999999999975 35555 357899999999998
Q ss_pred chhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchh
Q 008549 384 LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVP 460 (561)
Q Consensus 384 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~ 460 (561)
+++ .+ .+++++++|.++|+++.|++++|.+++.++|.+...+.+.+..++ .++.......++++|++.
T Consensus 78 ~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~ 148 (216)
T 4ev0_A 78 SLL---DE------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAY 148 (216)
T ss_dssp HHH---HC------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc---CC------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 652 22 268889999999999999999999999999999999988887776 335555666778888888
Q ss_pred hHhhhhhhCCCCCCCcceeccCCCCCCc
Q 008549 461 LRDKVKEKTPIPQRSKVKEKTPLPQQDK 488 (561)
Q Consensus 461 ~~~~~~~~~~~~~~~~v~~~~plt~~d~ 488 (561)
++..+.+. +..+..|+|++|-
T Consensus 149 ~L~~~~~~-------~~~~~~~~t~~~l 169 (216)
T 4ev0_A 149 ALLKLLRQ-------GLGPLFQIRHHEL 169 (216)
T ss_dssp HHHHHHHT-------TCCSEEECCHHHH
T ss_pred HHHHHhhc-------CCccCCCCCHHHH
Confidence 87776522 2234556666543
No 10
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.77 E-value=1.2e-18 Score=169.13 Aligned_cols=171 Identities=12% Similarity=0.162 Sum_probs=140.4
Q ss_pred hCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccch
Q 008549 307 KVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELV 385 (561)
Q Consensus 307 ~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l 385 (561)
.+|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++..+++|++||+.++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~---~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRF---HISRIVKPGQFFGMRPY 90 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CC---CEEEEECTTCEESHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEeCCCCEeeeehh
Confidence 5789999999999999999999999999999999999999999999999998543 4555 34689999999999866
Q ss_pred hhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhH
Q 008549 386 DWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLR 462 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~ 462 (561)
+ .+ .+++++++|.++|+++.|++++|.++++++|.+...+.+.+.+++ .++.......++++|++.++
T Consensus 91 ~---~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L 161 (232)
T 2gau_A 91 F---AE------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAETL 161 (232)
T ss_dssp H---HT------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred h---CC------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2 22 268889999999999999999999999999999999999887776 44555667788899999888
Q ss_pred hhhhhhCCCCCCCcceeccCCCCCCccc
Q 008549 463 DKVKEKTPIPQRSKVKEKTPLPQQDKVK 490 (561)
Q Consensus 463 ~~~~~~~~~~~~~~v~~~~plt~~d~~~ 490 (561)
..+....+. ...+..+..|+||+|--+
T Consensus 162 ~~l~~~~~~-~~~~~~~~~~~t~~~lA~ 188 (232)
T 2gau_A 162 LILKENFGF-ENDGATLSIYLSREELAT 188 (232)
T ss_dssp HHHHHHHCB-CTTSSBBSCCCCHHHHHH
T ss_pred HHHHHHcCC-CCCCcEEEcccCHHHHHH
Confidence 777666554 333445667787766443
No 11
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.77 E-value=6.3e-19 Score=171.02 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=142.6
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++|+++|+|.+++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~ 81 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRE---RVLGDIYAPGVV 81 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CE---EEEEEEESSEEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCce---EEEEecCCCCEE
Confidence 467899999999999999999999999999999999999999999999999999998754 5555 356899999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHhCCCCCCC-C
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPS-P 456 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---r~~~~~~~~~~-e 456 (561)
|+.+++ . ..+++++++|+++|+++.|++++|.+++.++|.+...+.+.+.+++.. +.. ....+. +
T Consensus 82 G~~~~~---~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~ 150 (231)
T 3e97_A 82 GETAVL---A------HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI--AFGQNTEA 150 (231)
T ss_dssp STTTTT---C------CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHHCHHH
T ss_pred eeHHHh---C------CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HhccChHH
Confidence 998652 2 237889999999999999999999999999999999999888777632 333 555666 8
Q ss_pred CchhhHhhhhhhCCCCCCCcceeccCCCCCCccc
Q 008549 457 LYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKVK 490 (561)
Q Consensus 457 r~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~ 490 (561)
|++.++.......+.+.. +..+..|+||+|--+
T Consensus 151 Rl~~~L~~~~~~~~~~~~-~~~~~~~~t~~~iA~ 183 (231)
T 3e97_A 151 ALTHVFANLYRQRLAAGV-PQPEVLPLGTQDIMA 183 (231)
T ss_dssp HHHHHHHHHHHHHHHHTC-SSTTEECCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC-CceEecCCCHHHHHH
Confidence 988888887766554333 455667777766433
No 12
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.77 E-value=2.1e-18 Score=167.75 Aligned_cols=170 Identities=12% Similarity=0.084 Sum_probs=140.7
Q ss_pred HHHHhhCcccccCCHHHHHHHhhc--ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCC
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDC--VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSD 378 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~--~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd 378 (561)
...++++|+|.++++++++.++.. ++.+.|++|++|+++||.++.+|||.+|.|+++..+ +|++ .++..+++|+
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~l~~~~~G~ 93 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIY---TVIEQIEAPY 93 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSC---EEEEEEESSE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCE---EEEEEccCCC
Confidence 567899999999999999999998 999999999999999999999999999999998643 4555 3568999999
Q ss_pred eEeccchhhhhcccCcccccc-ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHhCCCCCC
Q 008549 379 FYGAELVDWALRDCSLFEFSK-STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRP 454 (561)
Q Consensus 379 ~FGe~~l~~~l~~~~~~~~~~-~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---r~~~~~~~~~ 454 (561)
+||+.+++ .+ .+ +.++++|+++|+++.|++++|.++++++|.+...+.+.+..++.. +.......++
T Consensus 94 ~fG~~~~~---~~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~ 164 (232)
T 1zyb_A 94 LIEPQSLF---GM------NTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDL 164 (232)
T ss_dssp EECGGGGS---SS------CCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSH
T ss_pred eeeehHHh---CC------CCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 99998652 21 24 789999999999999999999999999999999999988887743 4455667778
Q ss_pred CCCchhhHhhhhhhCCCCCCCcceeccCCCCCCcc
Q 008549 455 SPLYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKV 489 (561)
Q Consensus 455 ~er~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~ 489 (561)
++|++.++..+...++ + .+..|+||+|--
T Consensus 165 ~~Rl~~~L~~l~~~~~-----~-~~~~~~t~~~lA 193 (232)
T 1zyb_A 165 KSKIIRFFLSHCEKPQ-----G-EKTFKVKMDDLA 193 (232)
T ss_dssp HHHHHHHHHTTCSSSS-----S-CEEEECCHHHHH
T ss_pred HHHHHHHHHHHHhhcC-----C-eEEecCCHHHHH
Confidence 8888888776655432 2 455677776543
No 13
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=3.7e-18 Score=152.06 Aligned_cols=132 Identities=13% Similarity=0.149 Sum_probs=112.8
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCcccccee---eeecCCC
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRK---RDHLEDS 377 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~---~~~l~~G 377 (561)
.++|+++|+|+++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++ .+ +..+++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~~~~G 81 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGS---AANSTVCSVVPG 81 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC------------CEEEEECTT
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCc---eEeeeEEEecCC
Confidence 357889999999999999999999999999999999999999999999999999998543 3433 23 6889999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR 445 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~r 445 (561)
++||+.+++ ...+++++++|.++|+++.|++++|.++++++|.+...+.+.+.+++.+|
T Consensus 82 ~~fG~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 82 AIFGVSSLI---------KPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp CEECGGGSS---------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred CEechHHHc---------CCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 999998652 22378889999999999999999999999999999999988887776543
No 14
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.76 E-value=1.2e-18 Score=168.87 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 233 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~ 233 (561)
.|..|+||+++|+||+||||+.|.|..++++++++|++|.+++++++|.+++.+++
T Consensus 165 ~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999998865
No 15
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.76 E-value=1.3e-17 Score=156.81 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEE
Q 008549 281 IENLLNNIPKEL----GKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLW 356 (561)
Q Consensus 281 ~~~il~~Lp~~L----r~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~ 356 (561)
+....+.+++.+ +.+...+...++|+++|+|++++++++..++..++.+.|++|++|+++|++++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555555443 3334445567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEec-CCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHH
Q 008549 357 TYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 435 (561)
Q Consensus 357 v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~ 435 (561)
++..+ +|++ .++..+++|++||+.+++ .+ .+++++++|.++|+++.|++++|.++++++|.++..+.
T Consensus 93 v~~~~~~g~~---~~~~~~~~G~~fGe~~~l---~~------~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~ 160 (187)
T 3gyd_A 93 VIKDIPNKGI---QTIAKVGAGAIIGEMSMI---DG------MPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVL 160 (187)
T ss_dssp EEEEETTTEE---EEEEEEETTCEESHHHHH---HC------CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred EEEECCCCCe---EEEEEccCCCeeeeHHHh---CC------CCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 98654 5555 346899999999998762 22 27889999999999999999999999999999998888
Q ss_pred HHHHH
Q 008549 436 QLAWR 440 (561)
Q Consensus 436 ~~~~~ 440 (561)
+.+.+
T Consensus 161 ~~l~~ 165 (187)
T 3gyd_A 161 IRLLQ 165 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 16
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.76 E-value=1e-18 Score=168.88 Aligned_cols=174 Identities=11% Similarity=0.154 Sum_probs=142.3
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++|+++|+|.++++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~ 84 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE---KILEVTNERNTF 84 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCC---BCCCEECTTEEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEe
Confidence 468899999999999999999999999999999999999999999999999999998643 4555 346899999999
Q ss_pred eccchhhhhcccCcccccc-ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHhCCCCCCCC
Q 008549 381 GAELVDWALRDCSLFEFSK-STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR---RKFRFPKRRPSP 456 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~-~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~---r~~~~~~~~~~e 456 (561)
|+.+++ . ..+ +.++++|.++|+++.|++++|.++++++|.+...+.+.+..++.. +.......++++
T Consensus 85 G~~~~~---~------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 155 (227)
T 3dkw_A 85 AEAMMF---M------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATH 155 (227)
T ss_dssp SCTTTT---T------TCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHhc---C------CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 998652 2 225 888999999999999999999999999999999998888877743 444555667788
Q ss_pred CchhhHhhhhhhCCCCCCCcceeccCCCCCCccc
Q 008549 457 LYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDKVK 490 (561)
Q Consensus 457 r~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~ 490 (561)
|++.++....... ...+..+..|+||+|--+
T Consensus 156 Rl~~~L~~~~~~~---~~~~~~~~~~~t~~~lA~ 186 (227)
T 3dkw_A 156 RVVRYLLTLAAHA---PGENCRVEIPVAKQLVAG 186 (227)
T ss_dssp HHHHHHHHHHCSS---SSSCCCCCCCSCTHHHHH
T ss_pred HHHHHHHHhhhhc---CCCCeEEEecCCHHHHHH
Confidence 8887776665543 233445677788766443
No 17
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.75 E-value=4.4e-18 Score=164.68 Aligned_cols=175 Identities=13% Similarity=0.124 Sum_probs=134.0
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
...+++.++|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++.++++|++|
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~ 86 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRE---LVLGYFGSGEFV 86 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEE
Confidence 457889999999999999999999999999999999999999999999999999998654 5565 357899999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhc-----HHHHHHHHHHHHHHH---HHHHHhCCCC
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEK-----MNQAALVIQLAWRHY---TRRKFRFPKR 452 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~-----p~~~~~~~~~~~~~~---~~r~~~~~~~ 452 (561)
|+.+++ . ...+++++++|.++|+++.|++++|.++++++ |.+...+.+.+.+++ .++.......
T Consensus 87 G~~~~~---~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~ 158 (230)
T 3iwz_A 87 GEMGLF---I-----ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFL 158 (230)
T ss_dssp SCGGGT---S-----CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Eehhhh---c-----CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998652 2 11267889999999999999999999999999 999999998887776 4456677788
Q ss_pred CCCCCchhhHhhhhhhCCCCCCCcceeccCCCCCCc
Q 008549 453 RPSPLYVPLRDKVKEKTPIPQRSKVKEKTPLPQQDK 488 (561)
Q Consensus 453 ~~~er~~~~~~~~~~~~~~~~~~~v~~~~plt~~d~ 488 (561)
++++|++.++..+....+.....+ ....|+||+|-
T Consensus 159 ~~~~Rl~~~L~~l~~~~~~~~~~~-~~~~~lt~~~l 193 (230)
T 3iwz_A 159 DVTDRIVRTLHDLSKEPEAMSHPQ-GTQLRVSRQEL 193 (230)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETT-EEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCC-ceecCCCHHHH
Confidence 899999999888877655421111 23456776553
No 18
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.75 E-value=3.9e-18 Score=163.91 Aligned_cols=155 Identities=14% Similarity=0.066 Sum_probs=132.2
Q ss_pred HHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCe--
Q 008549 303 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDF-- 379 (561)
Q Consensus 303 ~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~-- 379 (561)
++|+++|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++..+++|++
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G~~~~ 79 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGRE---ITLYRLFDMDMCL 79 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCE---EEEEEECTTCEES
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCE---EEEEecCCCCeee
Confidence 57889999999999999999999999999999999999999999999999999999654 5555 45789999999
Q ss_pred EeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCC
Q 008549 380 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSP 456 (561)
Q Consensus 380 FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~e 456 (561)
||+.+++ ...+++.+++|+++|+++.|++++|.+++.++|.+...+.+.+.+++ .++.......++++
T Consensus 80 ~g~~~~~---------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 150 (220)
T 3dv8_A 80 LSASCIM---------RSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDK 150 (220)
T ss_dssp GGGGGGC---------TTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHh---------CCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 6787552 22378889999999999999999999999999999999988887776 33555666788889
Q ss_pred CchhhHhhhhhhC
Q 008549 457 LYVPLRDKVKEKT 469 (561)
Q Consensus 457 r~~~~~~~~~~~~ 469 (561)
|++.++....+..
T Consensus 151 Rl~~~L~~~~~~~ 163 (220)
T 3dv8_A 151 RVASFLLEETSIE 163 (220)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9988887776653
No 19
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.75 E-value=7.7e-19 Score=169.16 Aligned_cols=170 Identities=9% Similarity=0.064 Sum_probs=146.2
Q ss_pred HHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 303 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 303 ~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+|+++|+|.+++++++..++..++.+.|++|++|+++||+++++|||.+|.|+++...+|++ .++..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~---~~~~~~~~G~~~G~ 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKE---FTLAILEAGDIFCT 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCE---EEEEEEETTCEEES
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCE---EEEEEcCCCCEeCC
Confidence 357889999999999999999999999999999999999999999999999999975556666 45789999999998
Q ss_pred cchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCch
Q 008549 383 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYV 459 (561)
Q Consensus 383 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~ 459 (561)
+++++++|.++|+++.|++++|.++++++|.+...+.+.+.+++ .++.......++++|++
T Consensus 81 ----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~ 144 (220)
T 2fmy_A 81 ----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLA 144 (220)
T ss_dssp ----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 24569999999999999999999999999999999998887776 44556677788899999
Q ss_pred hhHhhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 460 PLRDKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 460 ~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
.++..+....+.+...+..+..|+||+|--+.
T Consensus 145 ~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~ 176 (220)
T 2fmy_A 145 EFLVQAAMDTGLKVPQGIKLELGLNTEEIALM 176 (220)
T ss_dssp HHHHHHHHHHCEEETTEEEEECSSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEeccCCHHHHHHH
Confidence 99888888777666667778888888765443
No 20
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.74 E-value=8.7e-19 Score=169.14 Aligned_cols=169 Identities=10% Similarity=0.021 Sum_probs=143.7
Q ss_pred HHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 304 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 304 ~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
+|+++|+|.+++++++..++..++.+.|++|++|+++|++++++|||.+|.|+++...+|++ .++..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~---~~~~~~~~G~~fG-~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEERE---ISLFYLTSGDMFC-M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEE---EEEEEEETTCEEE-S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCE---EEEEEcCCCCEec-C
Confidence 36789999999999999999999999999999999999999999999999999975456666 3578999999999 2
Q ss_pred chhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchh
Q 008549 384 LVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVP 460 (561)
Q Consensus 384 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~ 460 (561)
+++++++|+++|+++.|++++|.+++.++|.+...+.+.+.+++ .++.......++++|++.
T Consensus 77 ---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 141 (222)
T 1ft9_A 77 ---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAG 141 (222)
T ss_dssp ---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 57789999999999999999999999999999999998887776 445556777888899999
Q ss_pred hHhhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 461 LRDKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 461 ~~~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
++..+....+.+...+..+..|+||+|--+.
T Consensus 142 ~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~ 172 (222)
T 1ft9_A 142 FFIDHANTTGRQTQGGVIVSVDFTVEEIANL 172 (222)
T ss_dssp HHHHTCBCCCSCC--CCCCEECCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEeccCCHHHHHHH
Confidence 9888887777766666677888888765443
No 21
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.74 E-value=2.9e-17 Score=147.33 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=116.9
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++++++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~ 80 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRE---NMLAVVGPSELI 80 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSE---EEEEEECTTCEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcE---EEEEEcCCcCEe
Confidence 356889999999999999999999999999999999999999999999999999998654 4555 356899999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTRR 445 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~r 445 (561)
|+.+++ . ..++.++++|.++|+++.|++++|.++++++|.+...+.+.+.+++...
T Consensus 81 G~~~~~---~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~ 136 (149)
T 2pqq_A 81 GELSLF---D------PGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKT 136 (149)
T ss_dssp SGGGGT---S------CEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred chHHhc---C------CCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 998652 2 2378889999999999999999999999999999999999888877543
No 22
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.74 E-value=8.9e-18 Score=149.60 Aligned_cols=131 Identities=14% Similarity=0.201 Sum_probs=111.8
Q ss_pred cCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccc
Q 008549 287 NIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNG 366 (561)
Q Consensus 287 ~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~ 366 (561)
.+|..+|.+...+...++|+++|+|+++++++++.++..++.+.|++|++|+++|+.++++|||++|.|++.. +|.
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 5788888888888889999999999999999999999999999999999999999999999999999999965 333
Q ss_pred cceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHH
Q 008549 367 STRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAAL 433 (561)
Q Consensus 367 ~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~ 433 (561)
++..+++|++||+.+++ .+ .+++++++|.++|+++.|++++|.++++++|.+.+.
T Consensus 83 ---~~~~~~~G~~fGe~~~l---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 ---KLCTMGPGKVFGELAIL---YN------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp ---EEEEECTTCEESCHHHH---HC------CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred ---EEEEeCCCCEeccHHHH---CC------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 24889999999998763 22 278899999999999999999999999999987653
No 23
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.73 E-value=5.2e-17 Score=146.68 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=112.1
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++++++++|.+++++++..++..++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++|
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~ 87 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE---KILEVTNERNTF 87 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC--------CCEEECTTEEE
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCE---EEEEEccCCCee
Confidence 567899999999999999999999999999999999999999999999999999998643 3454 346899999999
Q ss_pred eccchhhhhcccCcccccc-ccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 381 GAELVDWALRDCSLFEFSK-STKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~-~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
|+.+++ .+ .+ +.++++|.++|+++.|++++|.++++++|.+...+.+.+..++
T Consensus 88 G~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 88 AEAMMF---MD------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp SGGGGG---SS------CSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHhhc---cC------CCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 998652 21 25 8889999999999999999999999999999999988877665
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.72 E-value=3.6e-17 Score=145.12 Aligned_cols=125 Identities=21% Similarity=0.330 Sum_probs=111.9
Q ss_pred HHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeE
Q 008549 301 CWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 301 ~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~F 380 (561)
..++++++|+|.+++++++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ + ..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~------~~~~~G~~~ 79 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P------VELGPGAFF 79 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C------EEECTTCEE
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c------ceECCCCEe
Confidence 3568999999999999999999999999999999999999999999999999999998543 2 468999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 443 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 443 (561)
|+.+++ .+ .++..+++|.++|+++.|++++|.++++++|.+...+.+.+.+|++
T Consensus 80 G~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~ 133 (138)
T 1vp6_A 80 GEMALI---SG------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG 133 (138)
T ss_dssp CHHHHH---HC------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred eehHhc---cC------CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhc
Confidence 998662 22 2678899999999999999999999999999999999988777753
No 25
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.72 E-value=1.5e-17 Score=152.02 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=109.9
Q ss_pred HHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 298 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 298 ~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
.....++|+++|+|++++++++..++..++.+.|++|++|+++|+.++++|||.+|.|+++...+|++ .++..+++|
T Consensus 33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~---~~~~~~~~G 109 (161)
T 3idb_B 33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG---RCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEE---EEEEEEESC
T ss_pred HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCe---EEEEEcCCC
Confidence 44457789999999999999999999999999999999999999999999999999999998556665 357899999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAAL 433 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~ 433 (561)
++||+.+++ . ..+++++++|.++|+++.|++++|.++++++|.+.+.
T Consensus 110 ~~fGe~~~~---~------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~ 156 (161)
T 3idb_B 110 GSFGELALM---Y------NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRK 156 (161)
T ss_dssp CEECGGGGT---C------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCC
T ss_pred CEechHHHH---c------CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHH
Confidence 999998662 2 2378899999999999999999999999999977543
No 26
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.72 E-value=2.1e-17 Score=157.51 Aligned_cols=169 Identities=9% Similarity=0.056 Sum_probs=133.5
Q ss_pred cccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEeccchhh
Q 008549 309 HEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGAELVDW 387 (561)
Q Consensus 309 ~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe~~l~~ 387 (561)
++++.+++++++.++..++.+.|++|++|+++|++++++|||.+|.|+++.. .+|++ .++..+++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~g~~~G~~~~~- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCE---EEEEEEETTCEESCTTTT-
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEeeeHHHh-
Confidence 4677899999999999999999999999999999999999999999999965 35655 457899999999998652
Q ss_pred hhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhh
Q 008549 388 ALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDK 464 (561)
Q Consensus 388 ~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~ 464 (561)
. ...+++++++|.++|+++.|++++|.++++++|.+...+.+.+..++ .++........+++|++.++..
T Consensus 78 --~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~ 150 (210)
T 3ryp_A 78 --E-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLN 150 (210)
T ss_dssp --S-----TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred --c-----CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 1 11267889999999999999999999999999999999988887776 3455566778889999988888
Q ss_pred hhhhCCCCCCCcceeccCCCCCCcc
Q 008549 465 VKEKTPIPQRSKVKEKTPLPQQDKV 489 (561)
Q Consensus 465 ~~~~~~~~~~~~v~~~~plt~~d~~ 489 (561)
+....+.....+ .+..|+||+|--
T Consensus 151 l~~~~~~~~~~~-~~~~~~t~~~iA 174 (210)
T 3ryp_A 151 LAKQPDAMTHPD-GMQIKITRQEIG 174 (210)
T ss_dssp HTTSTTCEEETT-EEEEECCHHHHH
T ss_pred HHHhcCcCCCCC-ceEeccCHHHHH
Confidence 776655322111 244567765543
No 27
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.71 E-value=5.8e-17 Score=154.11 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=130.0
Q ss_pred CCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhccc
Q 008549 314 LKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDC 392 (561)
Q Consensus 314 l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~ 392 (561)
|++++++.++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++.++++|++||+.+++ .
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~g~~~G~~~~~---~-- 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGRE---MIIGYLNSGDFFGELGLF---E-- 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE---EEEEEEETTCEESCTTTC---C--
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCCcccHHHh---c--
Confidence 588999999999999999999999999999999999999999998654 4555 457899999999998652 1
Q ss_pred Cccccc---cccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhh
Q 008549 393 SLFEFS---KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVK 466 (561)
Q Consensus 393 ~~~~~~---~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~ 466 (561)
+.. +++++++|+++|+++.|++++|.++++++|.+...+.+.+..++ .++.......++.+|++.++..+.
T Consensus 73 ---~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L~~l~ 149 (207)
T 2oz6_A 73 ---KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLC 149 (207)
T ss_dssp --------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred ---CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 57889999999999999999999999999999998888877766 445556677888899988887777
Q ss_pred hhCCCCCCCcceeccCCCCCC
Q 008549 467 EKTPIPQRSKVKEKTPLPQQD 487 (561)
Q Consensus 467 ~~~~~~~~~~v~~~~plt~~d 487 (561)
..++.....+ .+..|+||+|
T Consensus 150 ~~~~~~~~~~-~~~~~~t~~~ 169 (207)
T 2oz6_A 150 QQPDAMTHPD-GMQIKITRQE 169 (207)
T ss_dssp TSTTCEEETT-EEEEECCHHH
T ss_pred HhcCCCCCCC-ceecccCHHH
Confidence 6554321111 2445677655
No 28
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.70 E-value=5.6e-17 Score=155.50 Aligned_cols=167 Identities=10% Similarity=0.164 Sum_probs=108.1
Q ss_pred hCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccch
Q 008549 307 KVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELV 385 (561)
Q Consensus 307 ~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l 385 (561)
.-|+|+..++...+.+...++.+.|++|++|+++|+.++++|||.+|.|+++..+ +|++ .++..+++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~G~~~G~~~~ 79 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKT---LEIDEIKPVQIIASGFI 79 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCE---EEEEEECSSEESSGGGT
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEeeeHHH
Confidence 3478999999999999999999999999999999999999999999999998653 5565 35789999999999865
Q ss_pred hhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhH
Q 008549 386 DWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLR 462 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~ 462 (561)
+ . +..++.++++|+++|+++.|++++|.++++++|.+...+.+.+..++ .++.......++++|++.++
T Consensus 80 ~---~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~L 151 (213)
T 1o5l_A 80 F---S-----SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLMNFL 151 (213)
T ss_dssp T---S-----SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred h---c-----CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 2 1 11267889999999999999999999999999999988888877766 44566777888999999887
Q ss_pred hhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 463 DKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 463 ~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
.......+ .+..|+||+|--+.
T Consensus 152 ~~~~~~~g-------~~~~~~t~~~lA~~ 173 (213)
T 1o5l_A 152 VRHMNEKR-------ELTLPVTLEELSRL 173 (213)
T ss_dssp -----------------------------
T ss_pred HHHhccCC-------cccCCCCHHHHHHH
Confidence 77665433 34556666654433
No 29
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.70 E-value=2.7e-17 Score=161.74 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=145.7
Q ss_pred HHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEec
Q 008549 304 LLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 304 ~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
++..+..|..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++ .++.++++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~---~~~~~~~~G~~~G~ 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSE---KLLYYAGGNSLIGK 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCE---EEEEEECTTCEECC
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCE---EEEEEecCCCEEee
Confidence 344455569999999999999999999999999999999999999999999999865 35665 45789999999999
Q ss_pred cchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCch
Q 008549 383 ELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYV 459 (561)
Q Consensus 383 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~ 459 (561)
.+ ... ++++++|+++|+++.|++++|.+++.++|.+...+.+.+..++ .++.......++++|++
T Consensus 87 -~l----------~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~ 154 (250)
T 3e6c_C 87 -LY----------PTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRIL 154 (250)
T ss_dssp -CS----------CCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -ec----------CCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33 122 6779999999999999999999999999999999998888777 44666778889999999
Q ss_pred hhHhhhhhhCCCCCCCcceeccCCCCCCcccc
Q 008549 460 PLRDKVKEKTPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 460 ~~~~~~~~~~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
.++..+.+..+.+...+..+..|+||+|--+.
T Consensus 155 ~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~ 186 (250)
T 3e6c_C 155 RLFYELCSSQGKRVGDTYEITMPLSQKSIGEI 186 (250)
T ss_dssp HHHHHHHHHHCEEETTEEEEECCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcEecCCCCHHHHHHH
Confidence 99988888777655667778888888775433
No 30
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.68 E-value=4e-17 Score=144.73 Aligned_cols=126 Identities=37% Similarity=0.662 Sum_probs=103.0
Q ss_pred HHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeee--ecCCCCeE
Q 008549 303 HLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRD--HLEDSDFY 380 (561)
Q Consensus 303 ~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~--~l~~Gd~F 380 (561)
++|+++|+|.++++++++.++..++.+.|++|++|+++||.++.+|||++|.|++...++|++.. +. .+++|++|
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~---~~~~~l~~G~~f 82 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF---YNRSLLKEGDFC 82 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSS---SCEEECCTTCBS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCccee---eeeeeecCCCEe
Confidence 35789999999999999999999999999999999999999999999999999976445565532 35 89999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHH
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 431 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~ 431 (561)
|+.++++.+.+.+....++++++++|.++|+++.|++++|.++++++|.+.
T Consensus 83 Ge~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 83 GDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp STHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred cHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 998742123322110111367899999999999999999999999998654
No 31
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=1.7e-16 Score=157.22 Aligned_cols=167 Identities=10% Similarity=0.062 Sum_probs=132.1
Q ss_pred cccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEeccchhhhh
Q 008549 311 FRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGAELVDWAL 389 (561)
Q Consensus 311 F~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l 389 (561)
+..+++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++ .++.++++|++||+.+++
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e---~~~~~~~~G~~~Ge~~~~--- 127 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE---MILSYLNQGDFIGELGLF--- 127 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCE---EEEEEEETTCEESCTTTT---
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCE---EEEEEcCCCCEEeehHHh---
Confidence 35589999999999999999999999999999999999999999999965 35555 357899999999998652
Q ss_pred cccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhh
Q 008549 390 RDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVK 466 (561)
Q Consensus 390 ~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~ 466 (561)
. ...+++++++|+++|+++.|++++|.+++.++|.+...+.+.+..++ .++........+++|++.++..+.
T Consensus 128 ~-----~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~ 202 (260)
T 3kcc_A 128 E-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTGRIAQTLLNLA 202 (260)
T ss_dssp S-----TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred C-----CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 11267889999999999999999999999999999999988887776 445566777888999998888887
Q ss_pred hhCCCCCCCcceeccCCCCCCcc
Q 008549 467 EKTPIPQRSKVKEKTPLPQQDKV 489 (561)
Q Consensus 467 ~~~~~~~~~~v~~~~plt~~d~~ 489 (561)
...+.....+ .+..|+|++|--
T Consensus 203 ~~~~~~~~~~-~~~l~lt~~~lA 224 (260)
T 3kcc_A 203 KQPDAMTHPD-GMQIKITRQEIG 224 (260)
T ss_dssp TSTTCEEETT-EEEEECCHHHHH
T ss_pred HhcCCCCCCC-ceeecCCHHHHH
Confidence 7665422111 244567765543
No 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.66 E-value=6e-16 Score=140.33 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=103.5
Q ss_pred HHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCe
Q 008549 300 LCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 379 (561)
Q Consensus 300 l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~ 379 (561)
...++|+++|+|.+++++++..++..++.+.|++|++|+++|+.++++|||++|.|+++. +|+. +..+++|++
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~-----~~~~~~G~~ 107 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW-----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE-----EEEECTTCE
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE-----EEEecCCCE
Confidence 346789999999999999999999999999999999999999999999999999999987 3332 478999999
Q ss_pred EeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHH
Q 008549 380 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAA 432 (561)
Q Consensus 380 FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~ 432 (561)
||+.+++ .+ .++.++++|+++|+++.|++++|.++++++|.+.+
T Consensus 108 fGe~~~~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHH---HC------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhh---cC------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 9998763 22 27889999999999999999999999999987654
No 33
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.65 E-value=4.1e-16 Score=152.65 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=136.3
Q ss_pred HHHHHHHhhcce---eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcc
Q 008549 316 EETLDALCDCVK---PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRD 391 (561)
Q Consensus 316 ~~~l~~L~~~~~---~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~ 391 (561)
+++++.|..... .+.|++|++|+.+|+.++.+|||.+|.|+++..+ +|++ .++.++++|++||+.+++ .+
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~---~~l~~~~~g~~~G~~~~~---~~ 103 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEE---ITVALLRENSVFGVLSLL---TG 103 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCE---EEEEEECTTCEESCHHHH---SS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEEcchHHh---CC
Confidence 678888888888 9999999999999999999999999999998654 5555 357899999999998662 22
Q ss_pred cCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhhhh
Q 008549 392 CSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVKEK 468 (561)
Q Consensus 392 ~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~~~ 468 (561)
. ..++..+++|+++|+++.|++++|.++++++|.+...+.+.+..++ .++........+++|++.++..+...
T Consensus 104 ~----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~ 179 (243)
T 3la7_A 104 N----KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRD 179 (243)
T ss_dssp C----CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred C----CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 0024578999999999999999999999999999999988887776 33555677788899999998888887
Q ss_pred CCCCCCCcceeccCCCCCCcccc
Q 008549 469 TPIPQRSKVKEKTPLPQQDKVKV 491 (561)
Q Consensus 469 ~~~~~~~~v~~~~plt~~d~~~~ 491 (561)
.+.+...+..+..|+||+|--+.
T Consensus 180 ~g~~~~~~~~i~~~lt~~~lA~~ 202 (243)
T 3la7_A 180 FGVPCADGITIDLKLSHQAIAEA 202 (243)
T ss_dssp HEEECSSSEEECSCCCHHHHHHH
T ss_pred hCCCCCCCeEEeccCCHHHHHHH
Confidence 77666667778888888765443
No 34
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.65 E-value=1.1e-16 Score=173.06 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 236 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~ 236 (561)
..|..|+||++.||||+||||+.|.|..+++|++++|++|++++++++|.+.+.++....
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999999999999999999999999887776654
No 35
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.64 E-value=1.7e-15 Score=155.25 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=114.4
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeE
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~F 380 (561)
.++|+++|+|++++++++..++..++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ ++..+++|++|
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~----~~~~~~~G~~f 87 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA----IIARALPGMIV 87 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE----EEEEECTTCEE
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE----EEEEecCCCEe
Confidence 468899999999999999999999999999999999999999999999999999998764 4444 35889999999
Q ss_pred eccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 008549 381 GAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYT 443 (561)
Q Consensus 381 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~ 443 (561)
|+.+++ .+ .+++++++|+++|+++.|++++|.+++ ++|.+...+.+.+.++..
T Consensus 88 Ge~~l~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 88 GEIALL---RD------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp SHHHHH---HT------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred eHHHhc---CC------CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 999763 22 378999999999999999999999999 999999999888777664
No 36
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.64 E-value=6e-16 Score=150.91 Aligned_cols=165 Identities=14% Similarity=0.084 Sum_probs=131.3
Q ss_pred ccCCHHHHHHHhh--cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhh
Q 008549 312 RMLKEETLDALCD--CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWA 388 (561)
Q Consensus 312 ~~l~~~~l~~L~~--~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~ 388 (561)
++++++++..++. .++.+.|++|++|+++||+++++|||.+|.|+++..+ +|++ .++.++ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e---~~~~~~-~G~~~Ge~~~~-- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTI---MNLQYY-KGAFVIMSGFI-- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCE---EEEEEE-ESSEEEESBCT--
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCE---EEEEEc-CCCEecchhhh--
Confidence 4678899999885 5999999999999999999999999999999998653 5565 346778 99999998652
Q ss_pred hcccCcccccc--ccceEEEe-cceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhH
Q 008549 389 LRDCSLFEFSK--STKTIEAL-TNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLR 462 (561)
Q Consensus 389 l~~~~~~~~~~--~~~tv~A~-~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~ 462 (561)
.+. + +..++.|+ ++|+++.|++++|.+++.++|.+...+.+.+..++ .++.......++.+|++.++
T Consensus 76 -~~~------~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L 148 (238)
T 2bgc_A 76 -DTE------TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICSQL 148 (238)
T ss_dssp -TTC------CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred -cCC------CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 211 2 25678888 59999999999999999999999999998887776 44556677788889999988
Q ss_pred hhhhhhCCCCCCCcceecc-CCCCCCcc
Q 008549 463 DKVKEKTPIPQRSKVKEKT-PLPQQDKV 489 (561)
Q Consensus 463 ~~~~~~~~~~~~~~v~~~~-plt~~d~~ 489 (561)
..+....+.+...+..+.. |+||+|--
T Consensus 149 ~~l~~~~g~~~~~~~~i~~~~~t~~~lA 176 (238)
T 2bgc_A 149 LILTYVYGKETPDGIKITLDNLTMQELG 176 (238)
T ss_dssp HHHHHHHEEEETTEEEECCSCCCHHHHH
T ss_pred HHHHHHhCCCCCCceEEEeccCCHHHHH
Confidence 8877766554444556677 78887643
No 37
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=1.3e-15 Score=153.66 Aligned_cols=134 Identities=19% Similarity=0.225 Sum_probs=119.0
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec--CCccccceeeeecCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN--DLTNGSTRKRDHLED 376 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~--~g~~~~~~~~~~l~~ 376 (561)
.....+++++|+|..++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++..+ +|++ .++..+++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~---~~~~~l~~ 229 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP---VFLRTLGK 229 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCC---EEEEEEET
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcc---eEEEEcCC
Confidence 345678899999999999999999999999999999999999999999999999999999764 4544 35689999
Q ss_pred CCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 008549 377 SDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHYTR 444 (561)
Q Consensus 377 Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~~~ 444 (561)
|++||+.+++ . ..+++++++|.++|+++.|++++|.+++.++|.+...+.+.+.+|++.
T Consensus 230 G~~fGe~~ll---~------~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~ 288 (299)
T 3shr_A 230 GDWFGEKALQ---G------EDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKY 288 (299)
T ss_dssp TCEECGGGGS---S------SEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred CCEeChHHHh---C------CCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhc
Confidence 9999999762 2 237899999999999999999999999999999999999888887744
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.63 E-value=2.3e-15 Score=151.86 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=118.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCc
Q 008549 285 LNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLT 364 (561)
Q Consensus 285 l~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~ 364 (561)
...+|...|.+...+...+.++++++|++++++++..++..++.+.|++|++|+++||.++.+|||++|.|++.. +|.
T Consensus 21 ~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~g~ 98 (299)
T 3shr_A 21 MQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV 98 (299)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--TTE
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--CCE
Confidence 446999999998888889999999999999999999999999999999999999999999999999999999965 332
Q ss_pred cccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHH
Q 008549 365 NGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAAL 433 (561)
Q Consensus 365 ~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~ 433 (561)
.+..+.+|++||+.+++ . ..+++++++|.++|+++.|++++|.+++.++|.....
T Consensus 99 -----~~~~~~~G~~fGe~~ll---~------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~ 153 (299)
T 3shr_A 99 -----KLCTMGPGKVFGELAIL---Y------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 153 (299)
T ss_dssp -----EEEEECTTCEESCSGGG---T------TTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred -----EEEEeCCCCeeeHhHHh---c------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHH
Confidence 24789999999999763 2 2378999999999999999999999999999966543
No 39
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.61 E-value=1e-15 Score=138.62 Aligned_cols=61 Identities=11% Similarity=0.339 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008549 177 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 237 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~ 237 (561)
..|..|+||+++|+|||||||+.|.|..+++++++++++|.+++++++|.+++.+.+...+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~ 143 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999988776543
No 40
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.61 E-value=4.3e-16 Score=137.80 Aligned_cols=114 Identities=12% Similarity=0.173 Sum_probs=98.6
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeC-CCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFT-EHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~-~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
....++|+++++|..++++.+..++..++.+.|+ +|++|+++|+.++.+|||++|.|+++.. +|++ ..+++|
T Consensus 12 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~-~g~~------~~l~~G 84 (134)
T 2d93_A 12 EQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHP-DGKV------ENLFMG 84 (134)
T ss_dssp HHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECS-SSCE------EEECTT
T ss_pred HHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcC-CCcE------EEecCC
Confidence 3445688999999999999999999999999999 9999999999999999999999999863 3443 458999
Q ss_pred CeEeccchhhhhcccCccccccccceE-EEecceeEEEeCHHHHHHHHHhcH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTI-EALTNIEAFTLMADDLKIVFNEKM 428 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~ll~i~~~~f~~ll~~~p 428 (561)
++||+.+++ ...++.+++ +|.++|+++.|++++|.+++++.+
T Consensus 85 ~~fG~~~~~---------~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 85 NSFGITPTL---------DKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp CEESCCSSS---------CCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred CccChhHhc---------CCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 999998652 223677788 999999999999999999987654
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=2.9e-14 Score=142.93 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=110.0
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 378 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd 378 (561)
+...+.|+++|+|++++++++..++..++.+.|++|++|+++||.++.+|||++|.|+++. +|. .+..+++|+
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~-----~~~~l~~G~ 107 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE-----WATSVGEGG 107 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE-----EEEEECTTC
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe-----EEEEcCCCC
Confidence 3456789999999999999999999999999999999999999999999999999999987 332 247899999
Q ss_pred eEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHH
Q 008549 379 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWR 440 (561)
Q Consensus 379 ~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~ 440 (561)
+||+.+++ . ..++.++++|.++|+++.|++++|.+++.++|.+...+.....+
T Consensus 108 ~fGe~~l~---~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 108 SFGELALI---Y------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp EECGGGGT---C------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHh---c------CCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99998662 2 23789999999999999999999999999999887766654433
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-14 Score=141.68 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=105.0
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
.+.|+++|+|++++++++..++..++.+.|++|++|+++||+++++|||++|.|+++. +++. +..+++|++||
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~-----~~~~~~g~~fG 78 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK-----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC-----CEEECTTCEEC
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE-----EEecCCCCeee
Confidence 5688999999999999999999999999999999999999999999999999999985 2332 37899999999
Q ss_pred ccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHH
Q 008549 382 AELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQ 436 (561)
Q Consensus 382 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~ 436 (561)
+.+++ .+ .+++++++|.++|+++.|++++|.+++.++|........
T Consensus 79 e~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 124 (246)
T 3of1_A 79 ELALM---YN------SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYD 124 (246)
T ss_dssp HHHHH---HT------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSH
T ss_pred hhHHh---cC------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHH
Confidence 98763 22 278999999999999999999999999999976655443
No 43
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.55 E-value=2.5e-14 Score=151.40 Aligned_cols=123 Identities=17% Similarity=0.198 Sum_probs=109.0
Q ss_pred HHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 298 RELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 298 ~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
.....+.|+++++|++++++++..|+..++.+.|++|++|+++||.++.+|||++|.|+++...+|++ .++..+++|
T Consensus 140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~---~~v~~l~~G 216 (416)
T 3tnp_B 140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG---RCVGNYDNR 216 (416)
T ss_dssp HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCE---EEEEEEESC
T ss_pred HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCE---EEEEEecCC
Confidence 34457789999999999999999999999999999999999999999999999999999997656655 346889999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAA 432 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~ 432 (561)
++||+.+++ . ..++.++++|.++|+++.|++++|..++.++|.+..
T Consensus 217 ~~fGe~all---~------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 217 GSFGELALM---Y------NTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp CEECGGGGT---S------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred CEEeeHHHh---c------CCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 999999763 2 237899999999999999999999999999887643
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=4.8e-14 Score=141.34 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=109.0
Q ss_pred HHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CC-ccccceeeeecCCC
Q 008549 300 LCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DL-TNGSTRKRDHLEDS 377 (561)
Q Consensus 300 l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g-~~~~~~~~~~l~~G 377 (561)
+...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++... +| +. ..+..+++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~---~~~~~l~~G 230 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEF---VEVGRLGPS 230 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCE---EEEEEECTT
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCcc---EEEEEeCCC
Confidence 34567889999999999999999999999999999999999999999999999999998643 33 32 346899999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQL 437 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~ 437 (561)
++||+.+++ . ..+++++++|.++|+++.|++++|.+++.++|++....++.
T Consensus 231 ~~fGe~~ll---~------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 231 DYFGEIALL---M------NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp CEECSGGGT---C------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred CEecHHHHc---C------CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 999998762 2 23789999999999999999999999999999887666554
No 45
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.55 E-value=1.4e-14 Score=126.16 Aligned_cols=59 Identities=12% Similarity=0.338 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 236 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~ 236 (561)
.|..|+||++.|+||+||||++|.|..+++++++++++|..++++++|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999877654
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.3e-14 Score=139.67 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=104.3
Q ss_pred HHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCe
Q 008549 300 LCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDF 379 (561)
Q Consensus 300 l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~ 379 (561)
+...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++ . +..+++|++
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~--~----~~~l~~g~~ 195 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG--V----INKLKDHDY 195 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE--E----EEEEETTCE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc--e----EEEcCCCCc
Confidence 3456788999999999999999999999999999999999999999999999999999976543 2 488999999
Q ss_pred EeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHH
Q 008549 380 YGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 431 (561)
Q Consensus 380 FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~ 431 (561)
||+.+++ .+ .++.++++|.++|+++.|++++|.+++..+|++.
T Consensus 196 fGe~~~~---~~------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 196 FGEVALL---ND------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp ECHHHHH---HT------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred ccHHHHh---CC------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999763 22 3789999999999999999999999999998764
No 47
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.54 E-value=3.1e-15 Score=132.94 Aligned_cols=92 Identities=7% Similarity=0.144 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccCCCCC
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPFQNLS 258 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~~~l~ 258 (561)
|..|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+++.+........+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 78899999999999999999999999999999999999999999999999988765443333322222222333445666
Q ss_pred HHHHHHHHHHhH
Q 008549 259 ANLQQEMKKYKP 270 (561)
Q Consensus 259 ~~L~~rv~~y~~ 270 (561)
++.+..+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666544
No 48
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.53 E-value=1.2e-14 Score=137.07 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=115.5
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEe
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 407 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~ 407 (561)
+.|++|++|+++|++++.+|||.+|.|+++..+ +|++ .++..+++|++||+ +++ .+ .+++++++|.
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~~G~~~Ge-~~~---~~------~~~~~~~~A~ 68 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRL---ITLRHVLPGDYFGE-EAL---EG------KAYRYTAEAM 68 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCE---EEEEEECTTCEECG-GGG---TC------SBCSSEEEES
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE---EEEEEecCCCEech-hhh---CC------CCceeEEEEC
Confidence 579999999999999999999999999998654 5555 34689999999999 873 22 2788999999
Q ss_pred cceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhhhhCCCCCCCcceeccCCC
Q 008549 408 TNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVKEKTPIPQRSKVKEKTPLP 484 (561)
Q Consensus 408 ~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~~~~~~~~~~~v~~~~plt 484 (561)
++|+++.|++++|. |.+...+.+.+..++ .++.......++++|++.++..+....+.+...+. +..|+|
T Consensus 69 ~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~-~~~~~t 141 (195)
T 3b02_A 69 TEAVVQGLEPRAMD------HEALHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQG-IYVTVS 141 (195)
T ss_dssp SSEEEEEECGGGCC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTE-EEEECC
T ss_pred CcEEEEEEcHHHcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCe-eeccCC
Confidence 99999999999998 999888888877776 44566777888899999888888776665544455 777888
Q ss_pred CCCccc
Q 008549 485 QQDKVK 490 (561)
Q Consensus 485 ~~d~~~ 490 (561)
|+|--+
T Consensus 142 ~~~lA~ 147 (195)
T 3b02_A 142 HEEIAD 147 (195)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 866443
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=148.41 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=111.3
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDS 377 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~G 377 (561)
.++..+++++++|..+++.++..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+ ++.+. .++..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~--~~v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEY--VEVGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCC--CEEEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCce--EEEEEeCCC
Confidence 445678899999999999999999999999999999999999999999999999999999653 23221 346889999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHH
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 438 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~ 438 (561)
++||+.+++ . ..++.++++|.++|+++.|++++|.+++..+|++....++..
T Consensus 322 d~fGe~all---~------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---L------NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---S------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---C------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999763 2 237899999999999999999999999999998877666543
No 50
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.52 E-value=5.7e-14 Score=126.74 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HhHHHHHHhcchhHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQI------YLQS----RTVRLKEMTVKPREI 248 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~------il~~----~~~~~~~~~~~~~~i 248 (561)
|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.+++ +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999886 3332 355566777889999
Q ss_pred hhhccCCCCCHHHHHH
Q 008549 249 EEWKPFQNLSANLQQE 264 (561)
Q Consensus 249 ~~~m~~~~l~~~L~~r 264 (561)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999998865
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=5.9e-14 Score=146.80 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=108.6
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 378 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd 378 (561)
....+.|+++++|++++++++..++..++.+.|++|++|+++||.++++|||.+|.|+++. +|+. +..+++|+
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~-----v~~l~~G~ 198 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW-----VTNISEGG 198 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE-----EEEEESSC
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE-----eeeCCCCC
Confidence 3446789999999999999999999999999999999999999999999999999999996 3332 47899999
Q ss_pred eEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHH
Q 008549 379 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLA 438 (561)
Q Consensus 379 ~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~ 438 (561)
+||+.+++ . ..+++++++|.++|+++.|++++|.+++.++|.+...+....
T Consensus 199 ~fGe~all---~------~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~ 249 (381)
T 4din_B 199 SFGELALI---Y------GTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEF 249 (381)
T ss_dssp CBCGGGGT---S------CCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchHHh---c------CCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHH
Confidence 99999763 2 237899999999999999999999999999998877555433
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=5.3e-14 Score=148.87 Aligned_cols=129 Identities=10% Similarity=0.130 Sum_probs=105.2
Q ss_pred HHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecC-------Cccccceeeeec
Q 008549 302 WHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFND-------LTNGSTRKRDHL 374 (561)
Q Consensus 302 ~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~-------g~~~~~~~~~~l 374 (561)
..+++++++|..++++++..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++..+. |++ .++..+
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~---~~l~~l 342 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGA---VEIARC 342 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC---------------CEEEEE
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCce---eEEEEe
Confidence 3467889999999999999999999999999999999999999999999999999985432 444 346899
Q ss_pred CCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 008549 375 EDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY 442 (561)
Q Consensus 375 ~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~ 442 (561)
++|++||+.+++ . ..+++++++|.++|+++.|++++|.+++..+|.+....++...+++
T Consensus 343 ~~G~~fGE~all---~------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L 401 (416)
T 3tnp_B 343 FRGQYFGELALV---T------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQL 401 (416)
T ss_dssp CTTCEESGGGGT---C------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--------
T ss_pred CCCCEecHHHHh---C------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 999999999762 2 2378999999999999999999999999999988776666554444
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.49 E-value=8.4e-14 Score=149.44 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccc
Q 008549 288 IPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNG 366 (561)
Q Consensus 288 Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~ 366 (561)
.|+..|.+...+...+.|+++++|.+++++++..++..++.+.|++|++|+++||.++.+|||++|.|+++..+ +|++.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 46666777777777889999999999999999999999999999999999999999999999999999999754 33310
Q ss_pred cceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHH
Q 008549 367 STRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVI 435 (561)
Q Consensus 367 ~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~ 435 (561)
- .++..+++|++||+.+ + . ..+++++++|.++|+++.|++++|.+++.++|.+...+.
T Consensus 107 ~-~~~~~~~~G~~fGe~~-l---~------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~ 164 (469)
T 1o7f_A 107 A-VTICTLGIGTAFGESI-L---D------NTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL 164 (469)
T ss_dssp C-EEEEEECTTCEECGGG-G---G------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred c-eEEEEccCCCCcchhh-h---C------CCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHH
Confidence 0 3468999999999985 2 2 237899999999999999999999999999998665544
No 54
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.44 E-value=2.4e-13 Score=145.92 Aligned_cols=123 Identities=9% Similarity=0.135 Sum_probs=102.4
Q ss_pred HHHHHHhhCcccccCCHHHHHHHhhccee-eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCC
Q 008549 300 LCWHLLKKVHEFRMLKEETLDALCDCVKP-TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 378 (561)
Q Consensus 300 l~~~~L~~i~lF~~l~~~~l~~L~~~~~~-~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd 378 (561)
...+.++++++|.+++++.+..++..+.. +.|++|++|+++||.++.+|||.+|.|+++..++ . ++..+++|+
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~--~----~~~~l~~G~ 407 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK--G----VVCTLHEGD 407 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT--E----EEEEEETTC
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC--e----eEEEecCCC
Confidence 34678999999999999999999999985 4899999999999999999999999999987432 2 248899999
Q ss_pred eEeccchhhhhcccCccccccccceEEEec-ceeEEEeCHHHHHHHHHhcHHHHHHHHHH
Q 008549 379 FYGAELVDWALRDCSLFEFSKSTKTIEALT-NIEAFTLMADDLKIVFNEKMNQAALVIQL 437 (561)
Q Consensus 379 ~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~i~~~~f~~ll~~~p~~~~~~~~~ 437 (561)
+||+.+++ . ..++.++++|.+ +|+++.|++++|.+++.++|.+...+.+.
T Consensus 408 ~fGe~~ll---~------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 408 DFGKLALV---N------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp EECGGGGT---C------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEEEehhh---c------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 99999762 2 237899999998 79999999999999999999887766554
No 55
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.42 E-value=7.4e-14 Score=132.33 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=113.1
Q ss_pred HhhcceeeeeCCCcEEEcCCCcc--CEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEeccchhhhhcccCccccc
Q 008549 322 LCDCVKPTFFTEHAHIIREGDPI--DELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFS 398 (561)
Q Consensus 322 L~~~~~~~~~~~ge~I~~eGd~~--~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~ 398 (561)
+...++.+.|++|++|+++||++ +++|||.+|.|+++..+ +|++ .++..+++|++||+ +++ .+.
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~---~~~~~~~~g~~~G~-~~l---~~~------ 67 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNA---LTLRLVRPGGFFGE-EAL---FGQ------ 67 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCE---EEEEEECTTCEECT-HHH---HTC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcE---EEEEEecCCCEeee-hhc---CCC------
Confidence 35678889999999999999999 99999999999998654 5565 35789999999999 652 222
Q ss_pred cccceEEEecceeEEEeCHHHHHHHHHhcHHHHHHHHHHHHHHH---HHHHHhCCCCCCCCCchhhHhhhhhhCCCCCCC
Q 008549 399 KSTKTIEALTNIEAFTLMADDLKIVFNEKMNQAALVIQLAWRHY---TRRKFRFPKRRPSPLYVPLRDKVKEKTPIPQRS 475 (561)
Q Consensus 399 ~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~~~~~~~~~~~~---~~r~~~~~~~~~~er~~~~~~~~~~~~~~~~~~ 475 (561)
++..+++|+++|+++.| +++|. |.+...+.+.+..++ .++.......++++|++.++..+....+. ...
T Consensus 68 ~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~-~~~ 139 (202)
T 2zcw_A 68 ERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAAALLELSETPLA-HEE 139 (202)
T ss_dssp CBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTE-EEE
T ss_pred CcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-CCC
Confidence 67889999999999999 99886 888888888777665 44556677788899999888887766554 323
Q ss_pred cceeccCCCCCCcc
Q 008549 476 KVKEKTPLPQQDKV 489 (561)
Q Consensus 476 ~v~~~~plt~~d~~ 489 (561)
+..+..|+||+|--
T Consensus 140 ~~~~~~~~t~~~lA 153 (202)
T 2zcw_A 140 EGKVVLKATHDELA 153 (202)
T ss_dssp TTEEEEECCHHHHH
T ss_pred CcEEccCCCHHHHH
Confidence 44567778876643
No 56
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.38 E-value=1.8e-12 Score=151.82 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=103.5
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSD 378 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd 378 (561)
++....|+++++|+++++.++..|+..+..+.|++|++||++||.++.+|+|++|.|.|+..+.+.......+..+++|+
T Consensus 38 ~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~ 117 (999)
T 4f7z_A 38 DIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGT 117 (999)
T ss_dssp HHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTC
T ss_pred HHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCc
Confidence 34456789999999999999999999999999999999999999999999999999999865321110003458899999
Q ss_pred eEeccchhhhhcccCccccccccceEEEecceeEEEeCHHHHHHHHHhcHHHH
Q 008549 379 FYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLMADDLKIVFNEKMNQA 431 (561)
Q Consensus 379 ~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~~~~f~~ll~~~p~~~ 431 (561)
.||+ +++ .+ .+|+++++|.++|+++.|++++|..++.++|+..
T Consensus 118 sFGE-all---~n------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 118 AFGE-SIL---DN------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp EECG-GGG---GT------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred chhh-hhc---cC------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 9999 442 22 2799999999999999999999999999988543
No 57
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.38 E-value=5.8e-13 Score=118.85 Aligned_cols=58 Identities=14% Similarity=0.406 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRT 235 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~ 235 (561)
.|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+++.+.+..
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999998776543
No 58
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.33 E-value=2.8e-12 Score=143.50 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=108.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhhCcccccCCHHHHHHHhhcce-eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec
Q 008549 283 NLLNNIPKELGKKIKRELCWHLLKKVHEFRMLKEETLDALCDCVK-PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN 361 (561)
Q Consensus 283 ~il~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~L~~~~~-~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~ 361 (561)
.++... +..|.+...+...+.++++++|.+++++++..++..+. .+.|++|++|+++||.++.+|||++|.|+++..+
T Consensus 13 ~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~g 91 (694)
T 3cf6_E 13 MILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG 91 (694)
T ss_dssp HHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEETT
T ss_pred HHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEeC
Confidence 444333 33344333444577899999999999999999999998 7899999999999999999999999999998742
Q ss_pred CCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEec-ceeEEEeCHHHHHHHHHhcHHH
Q 008549 362 DLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALT-NIEAFTLMADDLKIVFNEKMNQ 430 (561)
Q Consensus 362 ~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~ll~i~~~~f~~ll~~~p~~ 430 (561)
+. ++.++++|++||+.+++ .+ .+++++++|.+ +|+++.|++++|.++++++|.+
T Consensus 92 --~~----il~~l~~Gd~fGe~al~---~~------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 92 --KG----VVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp --TE----EEEEEETTCEECHHHHH---HT------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred --CE----EEEEeCCCCEeehHHHh---CC------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 22 35899999999998663 22 26889999999 5999999999999999998855
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.26 E-value=3.4e-11 Score=103.24 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRT 235 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~ 235 (561)
|..|+||+++|+||+||||++|.|..+++++++.+++|..++++.++.+++.++...
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999998875443
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.25 E-value=2.8e-11 Score=141.82 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=97.9
Q ss_pred HHHHHHHhhCcccccCCHHHHHHHhhcceeee-eCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCC
Q 008549 299 ELCWHLLKKVHEFRMLKEETLDALCDCVKPTF-FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDS 377 (561)
Q Consensus 299 ~l~~~~L~~i~lF~~l~~~~l~~L~~~~~~~~-~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~G 377 (561)
+...+.+.++|.|+.++...++.|+..+.... +++|++|+++||.++.+|||++|.|+|+...++ .++.+++|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~------~v~~L~~G 406 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG------VVCTLHEG 406 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE------EEEEEETT
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc------ceEEecCC
Confidence 34467899999999999999999999998765 578999999999999999999999999874332 23789999
Q ss_pred CeEeccchhhhhcccCccccccccceEEEecc-eeEEEeCHHHHHHHHHh
Q 008549 378 DFYGAELVDWALRDCSLFEFSKSTKTIEALTN-IEAFTLMADDLKIVFNE 426 (561)
Q Consensus 378 d~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~ll~i~~~~f~~ll~~ 426 (561)
|+||+.++ +.+ .||.+|++|.++ |+++.|++++|.+++.+
T Consensus 407 d~FGElAL---L~~------~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 407 DDFGKLAL---VND------APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CEECGGGG---TCS------CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred Ccccchhh---ccC------CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 99999977 333 389999999885 99999999999999987
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.22 E-value=2.1e-12 Score=108.90 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTV 236 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~ 236 (561)
.|..|+||++.|+||+||||++|.|..+++++++.+++|..+++++++.+++.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999999999999999999999999999999988876544
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.13 E-value=9.9e-11 Score=94.16 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 231 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il 231 (561)
|..|+||+++|+||+||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999998765
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.11 E-value=1.2e-10 Score=96.76 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 234 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~ 234 (561)
|..|+||+++|+||+||||+.|.|..+++++++.+++|..+++++++.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999999999999999999999999999999999887543
No 64
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.99 E-value=7.8e-10 Score=110.70 Aligned_cols=61 Identities=10% Similarity=-0.030 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCc-ccc-cCCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008549 175 ILQKLLHCFVWGLQNLSNLGHD-LQS-GSDVWE----NIFVILVVSSGFLFFALLIGNMQIYLQSRT 235 (561)
Q Consensus 175 ~~~~Yl~slYwa~~tlttvGyG-Di~-p~t~~E----~~~~i~~~l~G~~~~a~iig~v~~il~~~~ 235 (561)
.+.-+..|+||++.|+||+||| |+. |.+..- ..|.+++++.|.++.+.++|.+.+-+....
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778999999999999999 985 766644 788899999999999999999888776543
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.97 E-value=1.7e-11 Score=112.55 Aligned_cols=59 Identities=12% Similarity=0.380 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVR 237 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~ 237 (561)
|..|+||+++|+|||||||+.|.|..+++++++++++|+++++++++.+++.+.+...+
T Consensus 68 ~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 126 (166)
T 3pjs_K 68 YPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126 (166)
T ss_dssp TTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHH
T ss_pred HHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999888765443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.89 E-value=3.8e-09 Score=105.88 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYL 231 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il 231 (561)
.|..|+|||+.|+|||||||+.|.+...++++++.+++|.+++|+++|.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999999999999999999999999887665
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.83 E-value=1.9e-09 Score=109.23 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 232 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~ 232 (561)
|..|+||++.|+|||||||++|.|...++++++.+++|.+++++++|.+.+.+.
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~ 150 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 150 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999987664
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.82 E-value=7.7e-09 Score=103.30 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 234 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~ 234 (561)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999888654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.70 E-value=1.8e-08 Score=101.71 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQS 233 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~ 233 (561)
.|..|+|||+.|+|||||||+.|.|...++++++.+++|.+++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999876643
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.68 E-value=4.8e-08 Score=107.19 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGN-MQIYLQS 233 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~-v~~il~~ 233 (561)
|..|+||+++|+||+||||+.|.|..+++|+++++++|.+++++.++. +++.+..
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999988 5555543
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.57 E-value=8.6e-08 Score=94.30 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQ 232 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~ 232 (561)
.|..|+||+++|+|||||||++|.|...++|+++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999886553
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.56 E-value=1.7e-07 Score=94.78 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhcccCcccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGS--DVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 234 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~--t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~ 234 (561)
+..++|||+.|+|||||||+.|. +..-++++++.+++|.++.|+.+|.+.+-+..-
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45789999999999999999997 677889999999999999999999887766543
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.55 E-value=3.3e-08 Score=98.73 Aligned_cols=57 Identities=14% Similarity=0.213 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWEN------IFVILVVSSGFLFFALLIGNMQIYLQSRT 235 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E~------~~~i~~~l~G~~~~a~iig~v~~il~~~~ 235 (561)
|+.|+||++.|+|||||||+.|.+...+ +++++++++|..+++++++.+++.+....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999887 49999999999999999999888776543
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.51 E-value=8.9e-08 Score=94.19 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhcccCcccccCCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 179 LLHCFVWGLQNLSNLGHDLQSGSDVWE-------NIFVILVVSSGFLFFALLIGNMQIYLQSR 234 (561)
Q Consensus 179 Yl~slYwa~~tlttvGyGDi~p~t~~E-------~~~~i~~~l~G~~~~a~iig~v~~il~~~ 234 (561)
|+.|+||++.|+|||||||+.|.+... ++++++++++|..+++++++.+++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999864 99999999999999999999998876543
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.43 E-value=6.9e-07 Score=90.42 Aligned_cols=55 Identities=11% Similarity=0.304 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhcccCcccccC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGS--DVWENIFVILVVSSGFLFFALLIGNMQIYLQ 232 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~--t~~E~~~~i~~~l~G~~~~a~iig~v~~il~ 232 (561)
.+..++|||+.|+||+||||+.|. +..-++++++.+++|.++.|+.+|.+.+-+.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999874 7889999999999999999999998776553
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.33 E-value=3.5e-08 Score=101.00 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 180 LHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSR 234 (561)
Q Consensus 180 l~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~ 234 (561)
..|+||+++|+||+||||+.|.|..+++|+++++++|.++++++++.+++.+.+.
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999998877554
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.84 E-value=4.3e-05 Score=73.43 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhcccCcccccC----Cc-hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008549 178 KLLHCFVWGLQNLSNLGHDLQSGS----DV-WENIFVILVVSSGFLFFALLIGNMQI 229 (561)
Q Consensus 178 ~Yl~slYwa~~tlttvGyGDi~p~----t~-~E~~~~i~~~l~G~~~~a~iig~v~~ 229 (561)
....|++|.+.++|+.|++|+-.. +. +=..|..++.+.+.++...++|-+.+
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~ 221 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVD 221 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999986221 11 11233334444445555555554443
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=92.06 E-value=0.064 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=16.3
Q ss_pred cccccccchhhHHHHhhchhhhh
Q 008549 6 SQYDKIIFVFSKIIYLLCYKQMA 28 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~lP~~~l~ 28 (561)
.+|+|++ ++|++|++|+....
T Consensus 80 ~~f~~~~--iiDllailP~~~~~ 100 (147)
T 2kyh_A 80 AGYVKKT--LYEIPALVPAGLLA 100 (147)
T ss_dssp HHHHHHS--TTTHHHHCCHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHH
Confidence 4688864 58999999997543
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=90.67 E-value=0.1 Score=45.02 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=17.2
Q ss_pred cccccccchhhHHHHhhchhhhh
Q 008549 6 SQYDKIIFVFSKIIYLLCYKQMA 28 (561)
Q Consensus 6 ~~Y~~~~~F~lDlls~lP~~~l~ 28 (561)
.+|++ |=++|+++++|+..-.
T Consensus 65 ~~y~~--~niiDllailp~~~~~ 85 (132)
T 1ors_C 65 AGYVK--KTLYEIPALVPAGLLA 85 (132)
T ss_dssp TTTTT--TCGGGTGGGSCHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHHH
Confidence 47888 7889999999987543
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=76.07 E-value=9.3 Score=35.66 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=51.9
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceE
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 404 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv 404 (561)
.+....+.||+.+-..--+.+.+++|++|.+++... +++ ..+.+||++=-. . ..+..+
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~~------~~l~~Gd~~~~p--------~------~~~H~~ 95 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NNK------KTISNGDFLEIT--------A------NHNYSI 95 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SCE------EEEETTEEEEEC--------S------SCCEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CEE------EEECCCCEEEEC--------C------CCCEEE
Confidence 344556899999977667889999999999999873 343 568999876332 1 234578
Q ss_pred EEecceeEEEe
Q 008549 405 EALTNIEAFTL 415 (561)
Q Consensus 405 ~A~~~~~ll~i 415 (561)
.|.+++.++.+
T Consensus 96 ~a~~~~~~l~i 106 (227)
T 3rns_A 96 EARDNLKLIEI 106 (227)
T ss_dssp EESSSEEEEEE
T ss_pred EECCCcEEEEE
Confidence 89999999877
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.02 E-value=12 Score=30.59 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=44.7
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEE
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIE 405 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~ 405 (561)
+....++||..+-..-.....+++|++|.+++.. +++. ..+.+||.+=-.. ....++.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~------~~l~~Gd~i~ip~--------------~~~H~~~ 95 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGAQ------RRLHQGDLLYLGA--------------GAAHDVN 95 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTEE------EEECTTEEEEECT--------------TCCEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCEE------EEECCCCEEEECC--------------CCcEEEE
Confidence 3445678888876544456799999999999876 3333 5789999764331 1233567
Q ss_pred EecceeEEE
Q 008549 406 ALTNIEAFT 414 (561)
Q Consensus 406 A~~~~~ll~ 414 (561)
+.+++.++.
T Consensus 96 ~~~~~~~~~ 104 (114)
T 3fjs_A 96 AITNTSLLV 104 (114)
T ss_dssp ESSSEEEEE
T ss_pred eCCCcEEEE
Confidence 777766543
No 82
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=74.86 E-value=2.4 Score=47.70 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhcccCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcchhHHhhhccC
Q 008549 177 QKLLHCFVWGLQNLSNLGHDLQSGSDVWENIFVILVVSSGFLFFALLIGNMQIYLQSRTVRLKEMTVKPREIEEWKPF 254 (561)
Q Consensus 177 ~~Yl~slYwa~~tlttvGyGDi~p~t~~E~~~~i~~~l~G~~~~a~iig~v~~il~~~~~~~~~~~~~~~~i~~~m~~ 254 (561)
.....+++|++.++++.| ++..|.+...+++.+++++++.++.+...+++++++.. ..+...++.+++...+
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~-----~~~~~~I~s~~dL~~~ 633 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-----ERMVSPIESAEDLSKQ 633 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCCCSSHHHHHC
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccCCCCCCHHHHhhC
Confidence 345678999999999888 57899999999999999999999999999999999865 2344555566555543
No 83
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=71.97 E-value=16 Score=29.48 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=31.1
Q ss_pred eeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 330 FFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 330 ~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+.+|..+-........+++|++|.+.+.. +++. ..+.+||.+=-
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~~------~~l~~Gd~i~i 88 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQK------IDLVPEDVLMV 88 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTEE------EEECTTCEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCEE------EEecCCCEEEE
Confidence 356666554334456789999999999876 3333 56899997643
No 84
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=67.87 E-value=11 Score=31.38 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=33.8
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...+.||..+-.. ...+++++|++|.+++.. +++. ..+++||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~~------~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGET------VTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 4457788766433 267899999999999976 3444 57999998754
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=66.16 E-value=29 Score=27.81 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=33.5
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..+-..--....+++|++|.+.+.. +++. ..+.+||.+=-
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~------~~l~~Gd~~~i 90 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQET------YRVAEGQTIVM 90 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTEE------EEEETTCEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 3445677887764333335789999999999875 3333 56899998743
No 86
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=62.95 E-value=33 Score=27.49 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=42.6
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEE
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIE 405 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~ 405 (561)
+....+.||..+-.---....+++|++|.+.+.. +++. ..+.+||.+=-.. .....+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~------~~l~~Gd~~~ip~--------------~~~H~~~ 93 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI------KVLTAGDSFFVPP--------------HVDHGAV 93 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE------EEECTTCEEEECT--------------TCCEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE------EEeCCCCEEEECc--------------CCceeeE
Confidence 3445678887653222236789999999999876 3343 5789999864321 1223455
Q ss_pred EecceeEEEe
Q 008549 406 ALTNIEAFTL 415 (561)
Q Consensus 406 A~~~~~ll~i 415 (561)
+.+++.++.+
T Consensus 94 ~~~~~~~l~v 103 (116)
T 2pfw_A 94 CPTGGILIDT 103 (116)
T ss_dssp ESSCEEEEEE
T ss_pred eCCCcEEEEE
Confidence 5566766655
No 87
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=55.03 E-value=23 Score=28.07 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=33.8
Q ss_pred ceeeeeCCCcEEEcC--CCc-cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIRE--GDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~e--Gd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..+-.. --. ...+++|++|.+.+.. +++. ..+.+||.+--
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~~------~~l~~Gd~~~i 74 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGHT------QALQAGSLIAI 74 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTEE------EEECTTEEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCEE------EEeCCCCEEEE
Confidence 344567888876543 233 5799999999999876 2333 56899987643
No 88
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=54.13 E-value=27 Score=27.05 Aligned_cols=47 Identities=6% Similarity=-0.116 Sum_probs=32.0
Q ss_pred eeeeeCCCcEEEcCCCc-cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 327 KPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
....+.||..+-..--. .+.+++|++|.+.+... ++. ..+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~~------~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EEE------ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TEE------EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CEE------EEeCCCCEEE
Confidence 34467788776432223 35799999999998763 333 5689999864
No 89
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=52.09 E-value=23 Score=29.04 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=34.0
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..+-..--....+++|++|.+.+.. +++. ..+.+||.+=-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~------~~l~~Gd~~~i 91 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEET------RVLRPGMAYTI 91 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTEE------EEECTTEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCEE------EEeCCCCEEEE
Confidence 3445678887764333345789999999999876 3333 57899997643
No 90
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=51.66 E-value=18 Score=32.34 Aligned_cols=36 Identities=22% Similarity=0.514 Sum_probs=27.1
Q ss_pred ccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 343 PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 343 ~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+.+.++++++|.+.+...++|+.. ...+++||+|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~----~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE----RADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE----EEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee----eEEECCCCEEEe
Confidence 457999999999999876655221 157999999854
No 91
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=50.00 E-value=41 Score=31.11 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=46.5
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceE
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 404 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv 404 (561)
.+....++||..+-..--+.+.+++|++|.+++.. +++. ..+.+||.+=-.+ ..+..+
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~~------~~l~~Gd~i~ip~--------------~~~H~~ 211 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGKP------FIVKKGESAVLPA--------------NIPHAV 211 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTEE------EEEETTEEEEECT--------------TSCEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCEE------EEECCCCEEEECC--------------CCcEEE
Confidence 34556789999876544456789999999999876 3343 5789999864321 123356
Q ss_pred EE-ecceeEEE
Q 008549 405 EA-LTNIEAFT 414 (561)
Q Consensus 405 ~A-~~~~~ll~ 414 (561)
.+ .++++++.
T Consensus 212 ~~~~~~~~~ll 222 (227)
T 3rns_A 212 EAETENFKMLL 222 (227)
T ss_dssp ECCSSCEEEEE
T ss_pred EeCCCCEEEEE
Confidence 77 77777664
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=49.63 E-value=49 Score=26.40 Aligned_cols=48 Identities=10% Similarity=-0.051 Sum_probs=34.2
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..-.. -....+++|++|.+.+... +++. ..+.+||.+--
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~~------~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGKK------YVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCCE------EEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCCE------EEECCCCEEEE
Confidence 34566788876544 3467999999999998763 2343 57999998744
No 93
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=48.75 E-value=18 Score=32.30 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=35.7
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||......-..++++++|++|++++...+.+... ...+.+||++--
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEEE
Confidence 45567888887654433457999999999998754322111 257899998754
No 94
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=45.34 E-value=60 Score=28.49 Aligned_cols=46 Identities=9% Similarity=0.012 Sum_probs=30.8
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..+.||..+-..--....+++|++|.+++.. +++. ..+.+||++=-
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~~------~~l~~GD~i~i 103 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRAV------SAVAPYDLVTI 103 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE------EEeCCCCEEEE
Confidence 3456666553322345689999999999876 3343 57899998743
No 95
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.98 E-value=35 Score=29.96 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=32.4
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....+.||..+-..--....+++|++|.+.+.. +++. ..+.+||++--
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~~------~~l~~Gd~i~i 106 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDRV------EPLTPLDCVYI 106 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 344566776653322346799999999999876 3333 56899998743
No 96
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=43.23 E-value=29 Score=28.35 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=32.8
Q ss_pred ceeeeeCCCcEEEcCCCc-cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 326 VKPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
+....+.||..+-..--. ...+++|++|.+.+... +++. ..+.+||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~~------~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGIV------THLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTCE------EEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCeE------EEeCCCCEEE
Confidence 444567888876443333 36889999999998652 3333 5689999764
No 97
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=43.06 E-value=21 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=26.5
Q ss_pred ccCEEEEEEEceEEEEEecCC---ccccceeeeecCCCCeEec
Q 008549 343 PIDELIFVMQGNLWTYSFNDL---TNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 343 ~~~~lyfI~~G~V~v~~~~~g---~~~~~~~~~~l~~Gd~FGe 382 (561)
..+.++++++|.+.+...++| .+ +.-..+++||+|=-
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~---~~dv~i~eGdmfll 92 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPK---FIDIIINEGDSYLL 92 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCE---EEEEEECTTEEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccc---eeeEEECCCCEEEc
Confidence 346899999999999876645 11 11257999998844
No 98
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=42.93 E-value=11 Score=29.57 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=31.6
Q ss_pred eeeeeCCCcEEE-cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHII-REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~-~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....++||...- ..-+..+.+++|++|.+++...++.+. ..+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~------~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVT------SQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEE------EEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEE------EEEcCCCEEEe
Confidence 345577777642 222222359999999999876432133 57999998754
No 99
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=41.62 E-value=43 Score=32.23 Aligned_cols=38 Identities=5% Similarity=0.156 Sum_probs=27.8
Q ss_pred CCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 341 GDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 341 Gd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
-+..+++|++++|.+.+-..++|+.. -..+++|++|=-
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~----~V~i~eGemfll 85 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHR----DVVIRQGEIFLL 85 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEE----EEEECTTEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCcee----eEEECCCeEEEe
Confidence 34567999999999998876655321 257899998843
No 100
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=40.98 E-value=30 Score=30.96 Aligned_cols=49 Identities=12% Similarity=0.035 Sum_probs=31.0
Q ss_pred eeCCCcEEE---cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 330 FFTEHAHII---REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 330 ~~~~ge~I~---~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+.||...- ........+++|++|.+.+...+++... ...+.+||.+--
T Consensus 123 ~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~----~~~l~~GD~~~~ 174 (198)
T 2bnm_A 123 DVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK----EALLPTGASMFV 174 (198)
T ss_dssp EECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE----EEEECTTCEEEE
T ss_pred EEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc----cEEECCCCEEEe
Confidence 456666543 1222346899999999998874322111 257999998743
No 101
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=40.69 E-value=32 Score=28.49 Aligned_cols=47 Identities=6% Similarity=-0.004 Sum_probs=33.1
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
-...||..-.... ..++++.|++|.+.+...+ |.. ..+++||.|---
T Consensus 47 We~tPG~~~~~~~-~~~E~~~iLeG~~~lt~dd-G~~------~~l~aGD~~~~P 93 (116)
T 3es4_A 47 WMAEPGIYNYAGR-DLEETFVVVEGEALYSQAD-ADP------VKIGPGSIVSIA 93 (116)
T ss_dssp EEECSEEEEECCC-SEEEEEEEEECCEEEEETT-CCC------EEECTTEEEEEC
T ss_pred EecCCceeECeeC-CCcEEEEEEEeEEEEEeCC-CeE------EEECCCCEEEEC
Confidence 3466776655543 2358999999999998644 443 579999988543
No 102
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=38.60 E-value=25 Score=29.41 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=32.3
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
....||..-....+ .+++++|++|.+.+... +|+. ..+++||.+---
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~------~~l~~GD~~~ip 100 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV------HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE------EEEETTCEEEEC
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE------EEECCCCEEEEC
Confidence 34566766554332 37999999999998753 3443 469999987543
No 103
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=38.42 E-value=33 Score=29.96 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=31.8
Q ss_pred eeeeeCCCcEEE--cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHII--REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....+.||.... ...+..+++++|++|.+.+... +++ ..+.+||.+--
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~~------~~l~~GD~i~i 95 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QGE------HPMVPGDCAAF 95 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TEE------EEECTTCEEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CEE------EEeCCCCEEEE
Confidence 345567777542 2222336999999999998863 333 56899998644
No 104
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=38.29 E-value=49 Score=26.99 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=44.8
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEe
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 407 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~ 407 (561)
...+.+|...-..--....+++|++|.+.+.. +++. ..+.+||++=-.. .....+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~~------~~l~~Gd~~~i~~--------------~~~H~~~~~ 95 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDED------FPVTKGDLIIIPL--------------DSEHHVINN 95 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTEE------EEEETTCEEEECT--------------TCCEEEEEC
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCEE------EEECCCcEEEECC--------------CCcEEeEeC
Confidence 34466666443222345689999999999876 3333 5689999764331 011123332
Q ss_pred --ccee--EEEeCHHHHHHHHHh
Q 008549 408 --TNIE--AFTLMADDLKIVFNE 426 (561)
Q Consensus 408 --~~~~--ll~i~~~~f~~ll~~ 426 (561)
++++ ++.++.+-+..++.+
T Consensus 96 ~~~~~~~~~i~f~~~~~~~~~~~ 118 (128)
T 4i4a_A 96 NQEDFHFYTIWWDKESTLNFLTR 118 (128)
T ss_dssp SSSCEEEEEEEECHHHHHHHHHH
T ss_pred CCCCEEEEEEEECHHHHHHHHHh
Confidence 3333 456777777766554
No 105
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=38.24 E-value=10 Score=30.21 Aligned_cols=51 Identities=8% Similarity=-0.017 Sum_probs=32.5
Q ss_pred ceeeeeCCCcEEEcC-CCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 326 VKPTFFTEHAHIIRE-GDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 326 ~~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
+....++||+-+-.. -......|+|.+|.+++...++... ...+.+|+.+=
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~-----~~~l~~G~~~~ 70 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS-----LAQLKTGRSYA 70 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE-----CCCBCTTCCEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE-----EEEecCCcEEE
Confidence 345668899888443 3344578889999999876443322 14578888653
No 106
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=38.10 E-value=32 Score=29.95 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=30.1
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
..+.||..+-..--....+++|++|.+++.. +++. ..+.+||++=
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~~------~~l~~Gd~i~ 93 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GETI------SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTEE------EEEETTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCEE------EEeCCCCEEE
Confidence 3456666553322345689999999999886 3333 5689999773
No 107
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=37.96 E-value=64 Score=24.81 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=33.5
Q ss_pred cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecceeEEEeC
Q 008549 344 IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNIEAFTLM 416 (561)
Q Consensus 344 ~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~i~ 416 (561)
...+++|++|.+.+... ++. ..+.+||.+--.. .....+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~~------~~l~~Gd~~~ip~--------------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQN------ITLQAGEMYVIPK--------------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SCE------EEEETTEEEEECT--------------TCCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CEE------EEEcCCCEEEECC--------------CCeEeeEcCCCCEEEEEE
Confidence 37899999999998753 333 5689998763321 122345555788877764
No 108
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.82 E-value=60 Score=28.80 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=31.3
Q ss_pred eeeCCCcEEEc--CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 329 TFFTEHAHIIR--EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 329 ~~~~~ge~I~~--eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..++||...-. -......+++|++|.+.+.. +++. ..+.+||.+=-
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~~------~~l~~GD~i~i 156 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQW------HELQQGEHIRF 156 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCEE------EEeCCCCEEEE
Confidence 35677766542 12334699999999999876 3343 57999998743
No 109
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=37.68 E-value=37 Score=27.35 Aligned_cols=46 Identities=2% Similarity=0.005 Sum_probs=29.1
Q ss_pred eeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeee-ecCCCCeEec
Q 008549 329 TFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRD-HLEDSDFYGA 382 (561)
Q Consensus 329 ~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~-~l~~Gd~FGe 382 (561)
..+.||..+-.---....+++|++|.+.+... ++. . .+.+||.+=-
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~~l~~Gd~i~i 78 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQE------PHNYKEGNIVYV 78 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TSC------CEEEETTCEEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CEE------EEEeCCCCEEEE
Confidence 34556655421112346899999999998763 333 3 6899997643
No 110
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=37.49 E-value=34 Score=29.60 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=31.3
Q ss_pred eeeeeCCCcE-E-EcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeE
Q 008549 327 KPTFFTEHAH-I-IREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 327 ~~~~~~~ge~-I-~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~F 380 (561)
....+.||.. . ........++++|++|.+.+.. +++. ..+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~------~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--ENDQ------YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTEE------EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCEE------EEeCCCCEE
Confidence 3456778774 2 2222245799999999999875 3333 568999987
No 111
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=37.47 E-value=32 Score=29.50 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=27.7
Q ss_pred cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 339 REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 339 ~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+.-+..|.+|+|++|.+.+...+++..........+++|+++--
T Consensus 45 h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvV 88 (140)
T 3d0j_A 45 EIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNV 88 (140)
T ss_dssp EEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEE
T ss_pred ccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEe
Confidence 33455689999999999988653211000011256899998754
No 112
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=37.33 E-value=28 Score=30.85 Aligned_cols=32 Identities=9% Similarity=-0.125 Sum_probs=24.8
Q ss_pred ccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 343 PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 343 ~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.++.++||++|.+.+.. +++. ..+.+||.|=-
T Consensus 109 ~gEE~~yVLeG~v~vtl--~g~~------~~L~~Gds~~i 140 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV--CKNK------FLSVKGSTFQI 140 (166)
T ss_dssp SEEEEEEEEESEEEEEE--TTEE------EEEETTCEEEE
T ss_pred CceEEEEEEEeEEEEEE--CCEE------EEEcCCCEEEE
Confidence 45689999999999987 3343 57999998754
No 113
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=36.29 E-value=47 Score=31.20 Aligned_cols=52 Identities=12% Similarity=0.025 Sum_probs=37.5
Q ss_pred hcceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 324 DCVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 324 ~~~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
..+....++||..+-. +-....+.++|++|++.+.. +++. ..+.+||++---
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~------~~l~~GD~~~~~ 217 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY------YPVTAGDIIWMG 217 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE------EEEETTCEEEEC
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE------EEcCCCCEEEEC
Confidence 3455667899987753 33456789999999999875 3444 579999986543
No 114
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=35.48 E-value=45 Score=27.77 Aligned_cols=47 Identities=6% Similarity=-0.031 Sum_probs=31.5
Q ss_pred eeeeeCCCcEEEcCCCc-cCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 327 KPTFFTEHAHIIREGDP-IDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
....++||..+-.---. ...+++|++|.+.+.. +++. ..+.+||.+=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~~------~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGKD------VPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTEE------EEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCEE------EEeCCCcEEE
Confidence 34567888765322122 3689999999999876 3333 5689999864
No 115
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=35.22 E-value=1.1e+02 Score=28.47 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=32.4
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...++||...-..- .+++++|++|.+++.. ++++ ..+++||.+--
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~~------~~l~~Gd~~~~ 98 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGET------RTLREYDYVYL 98 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSCE------EEECTTEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCEE------EEECCCCEEEE
Confidence 34577877654432 6789999999999875 3343 57999998644
No 116
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=34.59 E-value=36 Score=30.36 Aligned_cols=48 Identities=4% Similarity=-0.069 Sum_probs=31.4
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeE
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~F 380 (561)
+....++||...-.--.....+++|++|++++...+ ++. ..+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~------~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK------RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE------EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE------EEECCCCEE
Confidence 344456777644222233456889999999997632 333 579999998
No 117
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=34.56 E-value=40 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=24.8
Q ss_pred CccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 342 DPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 342 d~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...+.+++|++|.+++...++... ..+.+||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~~------~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTAP------RVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSSC------EEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEEE------EEECCCCEEEE
Confidence 356699999999999987432110 35899998644
No 118
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=34.54 E-value=1.3e+02 Score=23.28 Aligned_cols=48 Identities=15% Similarity=-0.037 Sum_probs=30.5
Q ss_pred eeeeCCCcEEEcC-CCccCEE-EEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIRE-GDPIDEL-IFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~e-Gd~~~~l-yfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...+.+|..+-.. -+....+ ++|++|.+.+...+ ++. ..+.+||.+--
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~~------~~l~~Gd~~~i 86 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DAV------IPAPRGAVLVA 86 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GCE------EEECTTEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CEE------EEECCCCEEEe
Confidence 3456788776432 2222466 89999999987531 233 56899997643
No 119
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=34.25 E-value=37 Score=28.65 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=31.6
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
...+.||..-... ..+++++|++|.+.+.. +++. ..+.+||.+---
T Consensus 61 ~~~~~pG~~~~h~--~~~E~~~VLeG~~~l~~--~g~~------~~l~~GD~i~~p 106 (133)
T 2pyt_A 61 FMQWDNAFFPWTL--NYDEIDMVLEGELHVRH--EGET------MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEEC--SSEEEEEEEEEEEEEEE--TTEE------EEEETTCEEEEC
T ss_pred EEEECCCCccccC--CCCEEEEEEECEEEEEE--CCEE------EEECCCcEEEEC
Confidence 3456777432222 35799999999999876 3444 479999987543
No 120
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=33.33 E-value=40 Score=27.75 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=30.2
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
...++||...-.---....+++|++|.+++... ++. ..+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QGE------ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SCE------EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CEE------EEECCCCEEE
Confidence 344566665532222367899999999998753 333 4688988764
No 121
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=33.24 E-value=41 Score=29.28 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=24.6
Q ss_pred ccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 343 PIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 343 ~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..+.+++|++|.+++.. +|+. ..+++||.+=-
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~~------~~l~~GD~i~i 114 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGRK------VSASSGELIFI 114 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTEE------EEEETTCEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCEE------EEEcCCCEEEE
Confidence 35689999999999985 4444 57999998743
No 122
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=33.14 E-value=79 Score=31.79 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=53.8
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEE
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEA 406 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A 406 (561)
....+++|+..-..-..+..+|.|.+|.-.+.. +++. ...++||.|---+. ...+..+
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I--~~~~------~~w~~gD~fvvP~w--------------~~h~~~n 339 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM--NGET------TKLEKGDMFVVPSW--------------VPWSLQA 339 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE--TTEE------EEECTTCEEEECTT--------------CCEEEEE
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE--CCEE------EEecCCCEEEECCC--------------CcEEEEe
Confidence 345677777765444566799999999988766 3343 56899999865421 2345677
Q ss_pred ecceeEEEeCHHHHHHHH
Q 008549 407 LTNIEAFTLMADDLKIVF 424 (561)
Q Consensus 407 ~~~~~ll~i~~~~f~~ll 424 (561)
.+++.++.++-.-+++-|
T Consensus 340 ~~~a~Lf~~~D~Pl~~~L 357 (368)
T 3nw4_A 340 ETQFDLFRFSDAPIMEAL 357 (368)
T ss_dssp SSSEEEEEEESHHHHHHT
T ss_pred CCCEEEEEEeCHHHHHHh
Confidence 799999999877766543
No 123
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=31.89 E-value=55 Score=25.75 Aligned_cols=68 Identities=6% Similarity=-0.026 Sum_probs=39.4
Q ss_pred eCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEecce
Q 008549 331 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEALTNI 410 (561)
Q Consensus 331 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~ 410 (561)
..+|+......+....+++|++|.+.+...+ ++. ..+.+||.+=-.. .....+.+.+++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~~------~~l~~Gd~~~ip~--------------~~~H~~~~~~~~ 93 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GGS------MTIREGEMAVVPK--------------SVSHRPRSENGC 93 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETT-SCE------EEECTTEEEEECT--------------TCCEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECC-CcE------EEECCCCEEEECC--------------CCcEeeEeCCCe
Confidence 3455543333333379999999999987633 133 5799999864321 112234445677
Q ss_pred eEEEeCHHH
Q 008549 411 EAFTLMADD 419 (561)
Q Consensus 411 ~ll~i~~~~ 419 (561)
.++.++...
T Consensus 94 ~~l~i~~~~ 102 (107)
T 2i45_A 94 SLVLIELSD 102 (107)
T ss_dssp EEEEEECC-
T ss_pred EEEEEECCC
Confidence 777775443
No 124
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=31.74 E-value=40 Score=29.16 Aligned_cols=55 Identities=5% Similarity=-0.058 Sum_probs=31.6
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccc-cceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNG-STRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~-~~~~~~~l~~Gd~FGe 382 (561)
...+.||..+-..--....+++|++|.+.+...++++.. -......+.+||++=-
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~i 100 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSI 100 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEE
Confidence 445677765421112345799999999998875422100 0001257899998643
No 125
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=31.19 E-value=43 Score=34.10 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=35.1
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
....++||+..-..-.....+|+|++|+..+.. +|++ ..+++||+|-.-
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge~------~~~~~GD~~~iP 345 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGKR------FDWSEHDIFCVP 345 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTEE------EEECTTCEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCEE------EEEeCCCEEEEC
Confidence 556678888775544456789999999986544 4444 579999998654
No 126
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.01 E-value=65 Score=29.80 Aligned_cols=46 Identities=15% Similarity=-0.050 Sum_probs=29.7
Q ss_pred eCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 331 FTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 331 ~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
+.||...=.---+.+++|+|++|.+++...+ ++. ..+++||.+=-.
T Consensus 139 l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~~------~~l~pGd~v~ip 184 (217)
T 4b29_A 139 WGPGLDYGWHEHLPEELYSVVSGRALFHLRN-APD------LMLEPGQTRFHP 184 (217)
T ss_dssp ECSSCEEEEEECSSEEEEEEEEECEEEEETT-SCC------EEECTTCEEEEC
T ss_pred ECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CCE------EecCCCCEEEcC
Confidence 4444443222245679999999999987642 333 568999987443
No 127
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=31.00 E-value=93 Score=28.02 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=44.9
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceE
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTI 404 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv 404 (561)
.+....+.||..+-.-.-.+..+.+|++|.+. ++ . ..+.+||++=.-. ....+.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de--~------~~~~~Gd~~~~p~--------------g~~H~p 179 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE--T------DRFGAGDIEIADQ--------------ELEHTP 179 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS--S------SEEETTCEEEECS--------------SCCCCC
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC--c------EEECCCeEEEeCc--------------CCccCC
Confidence 45677899999998777788899999999965 22 1 3589999864331 122345
Q ss_pred EE--ecceeEEEe
Q 008549 405 EA--LTNIEAFTL 415 (561)
Q Consensus 405 ~A--~~~~~ll~i 415 (561)
.+ .++|.++..
T Consensus 180 ~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 180 VAERGLDCICLAA 192 (195)
T ss_dssp EECSSSCEEEEEE
T ss_pred EeCCCCCEEEEEE
Confidence 55 667777764
No 128
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=30.77 E-value=68 Score=29.89 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=33.9
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeE
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFY 380 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~F 380 (561)
+....++||..+-.---....+++|++|.+++.. +++. ..+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~~------~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDVT------RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTEE------EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCEE------EEECCCCEE
Confidence 4445588888775444446789999999999886 3443 578999944
No 129
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=30.40 E-value=69 Score=30.70 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=37.6
Q ss_pred hcceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 324 DCVKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 324 ~~~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..+....++||..|-. +-..-.+.++|++|+..+.. +++. ..+.+||++--
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~~------~~v~~GD~~~~ 242 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQDW------VEVEAGDFMWL 242 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTEE------EEEETTCEEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCEE------EEeCCCCEEEE
Confidence 4456677999999964 44445688999999998875 3444 57999998743
No 130
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=30.13 E-value=1.1e+02 Score=27.60 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=35.1
Q ss_pred ceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCC---ccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDL---TNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g---~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||...-. .....+++++|++|.+++...+++ .+. ....+.+||.+--
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~---~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL---YSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE---EEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE---EEEEECCCCEEEE
Confidence 44556788876532 233357999999999998765332 220 1257999998754
No 131
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=29.75 E-value=49 Score=26.95 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=29.3
Q ss_pred eeeeeCCCcEEE--cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 327 KPTFFTEHAHII--REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 327 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
....++||..+- ..-+....+|+|++|.+.+... ++. ..+.+||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i~--~~~------~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITID--GEK------IELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEET--TEE------EEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEEC--CEE------EEeCCCCEEE
Confidence 344567776542 2222234577799999998762 333 5688988764
No 132
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=29.38 E-value=73 Score=30.46 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=43.3
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEE
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEA 406 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A 406 (561)
....++||..--......+++.+|++|++.+...+ |++ ..+.+||.+=..+ ....+++.
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~------~~L~~Gds~y~p~--------------~~~H~~~N 131 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS------KKLTVDSYAYLPP--------------NFHHSLDC 131 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC------EEECTTEEEEECT--------------TCCCEEEE
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE------EEEcCCCEEEECC--------------CCCEEEEe
Confidence 34557787764223344679999999999997631 343 5699999874431 12224444
Q ss_pred ecceeEEEeC
Q 008549 407 LTNIEAFTLM 416 (561)
Q Consensus 407 ~~~~~ll~i~ 416 (561)
.++++++.+.
T Consensus 132 ~~~Ar~l~V~ 141 (266)
T 4e2q_A 132 VESATLVVFE 141 (266)
T ss_dssp SSCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 5778888773
No 133
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=28.13 E-value=50 Score=33.84 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=37.6
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+....+.||..+-..-...+++++|++|.+++...+.+... ...+.+||++--
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~i 103 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD----SYNLHPGDAQRI 103 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE----EEEECTTEEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe----EEEecCCCEEEE
Confidence 455677899987755555678999999999998753322211 257899998743
No 134
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=27.95 E-value=75 Score=30.22 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=34.2
Q ss_pred ceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..+-. .--...++++|++|++.+.. +++. ..+.+||++=-
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i--~~~~------~~l~~GD~i~i 233 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL--DNEW------YPVEKGDYIFM 233 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE--TTEE------EEEETTCEEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE--CCEE------EEECCCCEEEE
Confidence 44456788887633 22346789999999999876 3333 57899998743
No 135
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=27.85 E-value=51 Score=34.01 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=38.6
Q ss_pred hcceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 324 DCVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 324 ~~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
-.+....+.||..+-.--...+++++|++|.+.+...+.+... ...+.+||++--
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~i 115 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD----SYILEQGHAQKI 115 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE----EEEEETTEEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE----EEEeCCCCEEEE
Confidence 3455677899988866555678999999999998754332221 257888888743
No 136
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.29 E-value=44 Score=34.01 Aligned_cols=49 Identities=16% Similarity=0.067 Sum_probs=34.5
Q ss_pred eeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....++||+.+-..--....+|||++|+-..... +|++ ..+++||+|=-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~~------~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGHK------VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTEE------EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCEE------EEEcCCCEEEE
Confidence 5667888888854433445899999998755443 4444 56899998754
No 137
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=27.20 E-value=46 Score=27.76 Aligned_cols=47 Identities=6% Similarity=0.000 Sum_probs=27.4
Q ss_pred eeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 330 FFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 330 ~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+.||..+-.---....+++|++|.+.+....+++. ..+.+||++--
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~------~~l~~Gd~~~i 91 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRT------EEVGPGEAIFI 91 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTEE------EEECTTCEEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCEE------EEECCCCEEEE
Confidence 344554432111223456679999999873223443 57899997643
No 138
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=26.79 E-value=80 Score=28.21 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=30.9
Q ss_pred hhCcccccCCHHHHHHHhhcceeeeeCCCcEEEcCCCccCEEEEE
Q 008549 306 KKVHEFRMLKEETLDALCDCVKPTFFTEHAHIIREGDPIDELIFV 350 (561)
Q Consensus 306 ~~i~lF~~l~~~~l~~L~~~~~~~~~~~ge~I~~eGd~~~~lyfI 350 (561)
-..|.|.+++-.+.++++.. ..|++|+++...++++.+.
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~ltit 50 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVLV 50 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEEE
Confidence 36899999999888888777 2599999998877765443
No 139
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.55 E-value=82 Score=26.72 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...+.||..+-.---....+++|++|.+.+...+ +. ...+.+||.+--
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--~~-----~~~l~~Gd~i~i 99 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--KP-----ARILKKGDVVEI 99 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--SC-----CEEEETTCEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEECC--EE-----EEEECCCCEEEE
Confidence 4456777765322223468999999999987632 21 035889998743
No 140
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=26.33 E-value=58 Score=33.74 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=37.4
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
.+....+.||..+-..--.++++++|++|++++...+.+... ...+.+||++--
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~~ 140 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE----EEEecCCCEEEE
Confidence 445567899987755545578999999999988753322111 257899998754
No 141
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=25.53 E-value=1.4e+02 Score=29.61 Aligned_cols=73 Identities=5% Similarity=-0.003 Sum_probs=47.5
Q ss_pred eeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEeccchhhhhcccCccccccccceEEEe
Q 008549 328 PTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAELVDWALRDCSLFEFSKSTKTIEAL 407 (561)
Q Consensus 328 ~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~~l~~~l~~~~~~~~~~~~~tv~A~ 407 (561)
...+++|...-.--.....+|+|++|+.++.. +++. ..+.+||+|---.. ....+.+.
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~~------~~~~~GD~~~vP~~--------------~~H~~~n~ 329 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNET------FSFSAKDIFVVPTW--------------HGVSFQTT 329 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTEE------EEEETTCEEEECTT--------------CCEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCEE------EEEcCCCEEEECCC--------------CeEEEEeC
Confidence 44667776654333355689999999999876 3443 57999999754421 12245556
Q ss_pred cceeEEEeCHHHHHH
Q 008549 408 TNIEAFTLMADDLKI 422 (561)
Q Consensus 408 ~~~~ll~i~~~~f~~ 422 (561)
+++.++.++-.-+.+
T Consensus 330 e~~~l~~~~d~p~~~ 344 (354)
T 2d40_A 330 QDSVLFSFSDRPVQE 344 (354)
T ss_dssp EEEEEEEEESHHHHH
T ss_pred CCEEEEEEcCHHHHH
Confidence 888888886554443
No 142
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=25.18 E-value=75 Score=29.60 Aligned_cols=48 Identities=6% Similarity=-0.105 Sum_probs=33.7
Q ss_pred eeeeCC-CcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 328 PTFFTE-HAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 328 ~~~~~~-ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
...++| |..+-..--....+++|++|.+.+... ++. ..+.+||.+--.
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~~------~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTVE--GCT------VEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEET--TEE------EEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEEC--CEE------EEECCCCEEEEC
Confidence 445888 777644333456899999999998763 333 469999987543
No 143
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=23.74 E-value=1.1e+02 Score=25.78 Aligned_cols=52 Identities=12% Similarity=-0.095 Sum_probs=30.7
Q ss_pred eeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEe
Q 008549 328 PTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 328 ~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FG 381 (561)
...++||..+-. .-...+.+++|++|.+.+...+..... .....+.+||++=
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~--~~~~~l~~Gd~i~ 99 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNL--HFQEEVFDDYAIL 99 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBC--CEEEEEETTCEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccc--eeeEEECCCCEEE
Confidence 345677765522 222345899999999998864322100 0014688998763
No 144
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.66 E-value=98 Score=30.57 Aligned_cols=53 Identities=9% Similarity=-0.082 Sum_probs=34.8
Q ss_pred ceeeeeCCCcEEEc-CCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIR-EGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~-eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||...-. -....+.+++|++|.+++...+ +|+.. ...+.+||++--
T Consensus 54 ~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~----~~~l~~GD~~~i 108 (361)
T 2vqa_A 54 GVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE----IADVDKGGLWYF 108 (361)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE----EEEEETTEEEEE
T ss_pred eEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE----EEEEcCCCEEEE
Confidence 33456778876532 2333689999999999988654 33221 257899997643
No 145
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.29 E-value=1.1e+02 Score=29.67 Aligned_cols=48 Identities=17% Similarity=-0.005 Sum_probs=33.4
Q ss_pred eeeeeCCCcEEE-cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 327 KPTFFTEHAHII-REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 327 ~~~~~~~ge~I~-~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
....+.||...- ...+..+.+++|++|.+++.. +++. ..+.+||++=-
T Consensus 49 ~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--~~~~------~~l~~Gd~~~~ 97 (337)
T 1y3t_A 49 VLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGER------YLLISGDYANI 97 (337)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--TTEE------EEECTTCEEEE
T ss_pred EEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--CCEE------EEECCCCEEEE
Confidence 344578887653 333337899999999999875 3443 57999998643
No 146
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=23.14 E-value=72 Score=27.17 Aligned_cols=53 Identities=6% Similarity=-0.118 Sum_probs=34.6
Q ss_pred cceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEecc
Q 008549 325 CVKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGAE 383 (561)
Q Consensus 325 ~~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe~ 383 (561)
.+....++||..+-.-.-.....++|++|.... ..+... .-..+++|+++=.-
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~---~~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAA---GGDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGG---TSEEEESSEEEEEC
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEe---cceEeCCCEEEEEC
Confidence 355677899988865555567789999999984 223221 00357788876543
No 147
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=22.66 E-value=92 Score=31.14 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=35.0
Q ss_pred ceeeeeCCCcEEEcCCCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEe
Q 008549 326 VKPTFFTEHAHIIREGDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYG 381 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FG 381 (561)
+....+.||..+-..--...++++|++|.+++...+ +|+.. ...+.+||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~----~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF----IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE----EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE----EEEeCCCCEEE
Confidence 344567888865322223679999999999988755 34421 14789999764
No 148
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=22.44 E-value=1.3e+02 Score=29.71 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=35.3
Q ss_pred ceeeeeCCCcEEEcC-CCccCEEEEEEEceEEEEEec-CCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIRE-GDPIDELIFVMQGNLWTYSFN-DLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~e-Gd~~~~lyfI~~G~V~v~~~~-~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||..+-.. ....+++++|++|.+++...+ +|+.. ...+.+||+|--
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~----~~~l~~GD~~~i 290 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKAS----VSRLQQGDVGYV 290 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEE----EEEECTTCEEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEE----EEEECCCCEEEE
Confidence 445578888876432 223479999999999987533 33311 157899998754
No 149
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=22.01 E-value=71 Score=30.62 Aligned_cols=47 Identities=9% Similarity=0.058 Sum_probs=31.8
Q ss_pred eeeeCCCcEEEc--CCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIR--EGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~--eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...++||...-. .....+++++|++|++++... +++ ..+++||++=-
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v~--g~~------~~L~~GD~i~i 120 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQ--GQV------HAMQPGGYAFI 120 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEES--SCE------EEECTTEEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEEC--CEE------EEECCCCEEEE
Confidence 445677766521 123357899999999999863 333 57999998643
No 150
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=21.98 E-value=1.2e+02 Score=28.91 Aligned_cols=52 Identities=8% Similarity=-0.080 Sum_probs=37.6
Q ss_pred hhcceeeeeCCCcEEE-cCCCccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 323 CDCVKPTFFTEHAHII-REGDPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 323 ~~~~~~~~~~~ge~I~-~eGd~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...+....++||..|= .+--.-.+-++|++|+..+.. +++. ..+++||++--
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l--~~~~------~~V~~GD~i~~ 237 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL--GDNW------YPVQAGDVIWM 237 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE--TTEE------EEEETTCEEEE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE--CCEE------EEecCCCEEEE
Confidence 3445567799999983 455566799999999988775 3333 46899998643
No 151
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=21.77 E-value=1.2e+02 Score=30.22 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=34.6
Q ss_pred ceeeeeCCCcEEEcCCCcc-CEEEEEEEceEEEEEe-cCCccccceeeeecCCCCeEec
Q 008549 326 VKPTFFTEHAHIIREGDPI-DELIFVMQGNLWTYSF-NDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 326 ~~~~~~~~ge~I~~eGd~~-~~lyfI~~G~V~v~~~-~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
+....+.||...-..-... +++++|++|.+++... .+|+.. ...+.+||+|--
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~----~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR----TFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE----EEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE----EEEEcCCCEEEE
Confidence 3445678887764322233 7999999999998754 233211 157899998754
No 152
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=21.51 E-value=95 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.020 Sum_probs=23.5
Q ss_pred CEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 345 DELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 345 ~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
..+++|++|.+.+...+ ++. ..+.+||.+=-
T Consensus 65 ~E~~~vl~G~~~~~~~~-~~~------~~l~~Gd~~~i 95 (134)
T 2o8q_A 65 FQLFYVLRGWVEFEYED-IGA------VMLEAGGSAFQ 95 (134)
T ss_dssp CEEEEEEESEEEEEETT-TEE------EEEETTCEEEC
T ss_pred cEEEEEEeCEEEEEECC-cEE------EEecCCCEEEE
Confidence 78999999999987633 133 57899997643
No 153
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.46 E-value=70 Score=30.15 Aligned_cols=47 Identities=13% Similarity=0.267 Sum_probs=31.8
Q ss_pred eeeeCCCcEEEcC-C-CccCEEEEEEEceEEEEEecCCccccceeeeecCCCCeEec
Q 008549 328 PTFFTEHAHIIRE-G-DPIDELIFVMQGNLWTYSFNDLTNGSTRKRDHLEDSDFYGA 382 (561)
Q Consensus 328 ~~~~~~ge~I~~e-G-d~~~~lyfI~~G~V~v~~~~~g~~~~~~~~~~l~~Gd~FGe 382 (561)
...++||...-.. . ...+.+++|++|.+++.. ++++ ..+++||.+--
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~--~~~~------~~L~~Gd~~~~ 111 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA--EGKT------FALSEGGYLYC 111 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE--TTEE------EEEETTEEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE--CCEE------EEECCCCEEEE
Confidence 3456777655322 1 224679999999999986 3444 57999998754
Done!