Query 008550
Match_columns 561
No_of_seqs 1251 out of 2454
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 13:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1.1E-51 2.5E-56 373.5 36.4 452 45-539 50-508 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.2E-47 2.6E-52 347.6 35.7 427 4-502 51-507 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-43 8.3E-48 377.8 56.1 512 6-533 334-885 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-42 6.1E-47 371.1 56.8 515 4-533 162-683 (899)
5 KOG1174 Anaphase-promoting com 100.0 1.2E-40 2.6E-45 288.0 51.1 539 4-561 3-545 (564)
6 PRK11447 cellulose synthase su 100.0 3.8E-41 8.3E-46 361.0 57.2 508 2-533 29-685 (1157)
7 PRK11447 cellulose synthase su 100.0 6E-40 1.3E-44 351.8 52.8 523 3-531 64-723 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 1.1E-38 2.5E-43 321.8 49.1 434 43-520 127-577 (615)
9 TIGR00990 3a0801s09 mitochondr 100.0 7.9E-36 1.7E-40 301.2 51.6 458 4-517 130-600 (615)
10 KOG2002 TPR-containing nuclear 100.0 1E-35 2.3E-40 284.2 42.0 474 18-533 147-764 (1018)
11 PRK09782 bacteriophage N4 rece 100.0 2.3E-34 5E-39 294.5 53.5 508 4-530 47-722 (987)
12 KOG1155 Anaphase-promoting com 100.0 1.3E-33 2.8E-38 248.3 45.0 458 43-532 78-554 (559)
13 PRK09782 bacteriophage N4 rece 100.0 9.2E-34 2E-38 290.1 50.5 510 4-532 81-757 (987)
14 PRK15174 Vi polysaccharide exp 100.0 4.3E-33 9.4E-38 279.8 47.7 359 119-519 16-386 (656)
15 PRK15174 Vi polysaccharide exp 100.0 5.2E-33 1.1E-37 279.2 47.5 358 111-510 45-416 (656)
16 KOG0547 Translocase of outer m 100.0 3.3E-32 7.2E-37 241.0 38.9 425 43-515 115-567 (606)
17 PRK10049 pgaA outer membrane p 100.0 3.5E-32 7.5E-37 279.3 44.2 404 51-528 23-470 (765)
18 KOG1173 Anaphase-promoting com 100.0 9.6E-31 2.1E-35 236.3 43.4 480 3-531 18-535 (611)
19 PRK10049 pgaA outer membrane p 100.0 9E-31 1.9E-35 268.9 44.9 409 5-495 19-470 (765)
20 KOG2002 TPR-containing nuclear 100.0 4.2E-30 9.2E-35 246.1 44.9 521 2-530 42-611 (1018)
21 KOG1126 DNA-binding cell divis 100.0 8.5E-32 1.8E-36 248.4 29.1 303 218-521 322-627 (638)
22 KOG0547 Translocase of outer m 100.0 1.5E-30 3.4E-35 230.5 32.9 351 143-535 117-553 (606)
23 PRK14574 hmsH outer membrane p 100.0 3.9E-27 8.5E-32 236.8 50.2 445 40-523 31-522 (822)
24 KOG2003 TPR repeat-containing 100.0 1.4E-27 3E-32 210.2 30.6 476 4-533 204-708 (840)
25 KOG0495 HAT repeat protein [RN 100.0 2E-25 4.4E-30 204.9 44.3 411 118-533 416-865 (913)
26 KOG1126 DNA-binding cell divis 100.0 3.3E-28 7.3E-33 224.8 25.3 304 108-452 317-625 (638)
27 KOG1155 Anaphase-promoting com 100.0 3.3E-26 7.2E-31 202.0 36.1 363 45-483 166-538 (559)
28 PLN03081 pentatricopeptide (PP 100.0 4.9E-25 1.1E-29 226.3 50.1 478 4-533 90-602 (697)
29 PRK11788 tetratricopeptide rep 100.0 3.7E-26 8.1E-31 220.1 39.2 300 217-518 37-355 (389)
30 PRK11788 tetratricopeptide rep 100.0 6.1E-26 1.3E-30 218.6 37.8 299 140-480 34-346 (389)
31 KOG0548 Molecular co-chaperone 100.0 9.3E-26 2E-30 203.5 33.9 431 46-532 5-473 (539)
32 PRK14574 hmsH outer membrane p 100.0 8.8E-25 1.9E-29 219.9 44.6 386 106-533 32-498 (822)
33 KOG0624 dsRNA-activated protei 100.0 1.3E-25 2.8E-30 190.7 30.7 317 213-530 36-386 (504)
34 KOG0495 HAT repeat protein [RN 100.0 8.1E-24 1.8E-28 194.5 44.4 464 52-527 415-893 (913)
35 KOG0624 dsRNA-activated protei 100.0 1.1E-24 2.4E-29 185.1 35.5 387 37-520 32-428 (504)
36 KOG1173 Anaphase-promoting com 99.9 8.6E-24 1.9E-28 191.6 38.0 439 49-536 22-506 (611)
37 PLN03077 Protein ECB2; Provisi 99.9 8E-24 1.7E-28 222.8 43.3 442 45-533 255-705 (857)
38 PLN03218 maturation of RBCL 1; 99.9 6.2E-22 1.4E-26 205.1 55.3 398 45-481 372-783 (1060)
39 KOG4162 Predicted calmodulin-b 99.9 3.3E-23 7.1E-28 194.6 40.8 418 42-520 322-789 (799)
40 KOG2076 RNA polymerase III tra 99.9 2E-23 4.4E-28 199.4 40.0 365 108-513 139-554 (895)
41 KOG2003 TPR repeat-containing 99.9 6.6E-24 1.4E-28 187.1 34.0 445 9-510 245-718 (840)
42 KOG2076 RNA polymerase III tra 99.9 3.8E-23 8.1E-28 197.6 41.4 456 39-528 135-783 (895)
43 PLN03077 Protein ECB2; Provisi 99.9 1.3E-22 2.8E-27 213.6 48.3 472 7-533 259-765 (857)
44 PLN03081 pentatricopeptide (PP 99.9 4.6E-23 1E-27 211.8 43.0 445 45-533 89-542 (697)
45 PLN03218 maturation of RBCL 1; 99.9 3.7E-21 8E-26 199.4 54.7 461 4-521 373-850 (1060)
46 KOG0548 Molecular co-chaperone 99.9 8E-23 1.7E-27 184.8 33.7 425 3-477 4-485 (539)
47 TIGR00540 hemY_coli hemY prote 99.9 2E-22 4.3E-27 192.7 37.2 295 219-514 88-399 (409)
48 KOG1174 Anaphase-promoting com 99.9 1.5E-21 3.3E-26 170.2 32.2 373 46-426 133-514 (564)
49 PF13429 TPR_15: Tetratricopep 99.9 1.9E-24 4.2E-29 196.7 14.6 258 254-513 13-276 (280)
50 PF13429 TPR_15: Tetratricopep 99.9 1.7E-24 3.7E-29 197.1 13.6 257 222-481 15-277 (280)
51 PRK10747 putative protoheme IX 99.9 1E-20 2.2E-25 179.9 38.2 293 218-515 87-391 (398)
52 KOG1915 Cell cycle control pro 99.9 1.4E-18 3E-23 154.6 48.2 447 44-532 74-553 (677)
53 TIGR00540 hemY_coli hemY prote 99.9 7.1E-21 1.5E-25 182.1 36.9 296 144-481 87-399 (409)
54 KOG4162 Predicted calmodulin-b 99.9 3.9E-20 8.4E-25 174.2 40.5 390 106-535 321-770 (799)
55 KOG1915 Cell cycle control pro 99.9 3.4E-19 7.5E-24 158.4 43.8 460 12-515 84-586 (677)
56 KOG1129 TPR repeat-containing 99.9 2.3E-22 5E-27 170.0 18.5 272 51-383 187-462 (478)
57 PRK12370 invasion protein regu 99.9 7.8E-21 1.7E-25 188.6 32.2 268 245-516 252-537 (553)
58 KOG1156 N-terminal acetyltrans 99.9 5.2E-19 1.1E-23 163.5 41.1 431 40-515 4-469 (700)
59 KOG1127 TPR repeat-containing 99.9 2.9E-20 6.2E-25 179.2 34.2 406 121-532 471-980 (1238)
60 PRK10747 putative protoheme IX 99.9 7.3E-20 1.6E-24 174.0 36.6 257 222-482 125-391 (398)
61 PRK12370 invasion protein regu 99.9 1.5E-20 3.3E-25 186.5 32.0 260 218-481 261-535 (553)
62 KOG1129 TPR repeat-containing 99.9 7.6E-22 1.6E-26 166.9 17.7 249 211-461 219-472 (478)
63 KOG1127 TPR repeat-containing 99.9 1.2E-20 2.5E-25 181.8 25.5 372 154-533 471-898 (1238)
64 KOG2376 Signal recognition par 99.9 1.2E-17 2.5E-22 153.0 41.2 447 3-532 14-505 (652)
65 PRK11189 lipoprotein NlpI; Pro 99.9 9.6E-20 2.1E-24 165.7 27.7 232 229-464 40-283 (296)
66 KOG1125 TPR repeat-containing 99.9 1.3E-20 2.9E-25 172.0 21.6 225 222-447 292-527 (579)
67 PRK11189 lipoprotein NlpI; Pro 99.9 1.3E-19 2.9E-24 164.8 28.1 229 298-532 41-284 (296)
68 KOG1156 N-terminal acetyltrans 99.9 2.7E-18 5.9E-23 158.8 36.4 467 3-512 9-509 (700)
69 KOG1125 TPR repeat-containing 99.9 1.6E-20 3.5E-25 171.5 21.3 254 253-507 289-564 (579)
70 KOG3785 Uncharacterized conser 99.9 5.6E-18 1.2E-22 145.3 34.7 418 8-517 29-493 (557)
71 COG2956 Predicted N-acetylgluc 99.9 3.3E-18 7.2E-23 145.0 32.6 291 145-479 39-345 (389)
72 KOG0550 Molecular chaperone (D 99.9 1.6E-19 3.5E-24 157.9 24.9 292 38-382 44-353 (486)
73 COG3063 PilF Tfp pilus assembl 99.9 6.2E-19 1.4E-23 142.6 24.0 202 319-521 37-243 (250)
74 KOG0550 Molecular chaperone (D 99.9 6.7E-20 1.4E-24 160.2 18.6 266 219-485 53-354 (486)
75 COG2956 Predicted N-acetylgluc 99.8 1.4E-17 2.9E-22 141.3 30.5 270 218-517 38-314 (389)
76 COG3063 PilF Tfp pilus assembl 99.8 2.7E-18 5.8E-23 139.0 24.9 203 217-419 37-243 (250)
77 TIGR02521 type_IV_pilW type IV 99.8 2.4E-18 5.1E-23 153.7 26.6 196 249-478 31-229 (234)
78 TIGR02521 type_IV_pilW type IV 99.8 3.1E-18 6.7E-23 152.9 27.2 200 215-414 31-234 (234)
79 PLN02789 farnesyltranstransfer 99.8 7.1E-18 1.5E-22 152.4 25.3 202 263-464 51-267 (320)
80 PLN02789 farnesyltranstransfer 99.8 2.2E-17 4.7E-22 149.2 27.2 243 263-522 34-310 (320)
81 cd05804 StaR_like StaR_like; a 99.8 3.8E-16 8.3E-21 148.4 34.5 207 137-381 2-217 (355)
82 cd05804 StaR_like StaR_like; a 99.8 2E-15 4.3E-20 143.6 36.0 298 216-515 7-337 (355)
83 KOG4340 Uncharacterized conser 99.8 6.3E-15 1.4E-19 123.8 31.3 392 6-487 15-449 (459)
84 KOG2376 Signal recognition par 99.8 2.3E-14 5.1E-19 131.7 36.4 391 44-513 13-445 (652)
85 KOG3785 Uncharacterized conser 99.8 2.1E-14 4.5E-19 123.7 32.9 377 52-510 31-453 (557)
86 KOG1840 Kinesin light chain [C 99.8 5E-16 1.1E-20 146.5 24.5 242 245-513 195-478 (508)
87 PF12569 NARP1: NMDA receptor- 99.7 1.4E-14 2.9E-19 138.8 34.0 294 218-515 7-335 (517)
88 COG3071 HemY Uncharacterized e 99.7 1E-13 2.2E-18 121.9 35.1 292 219-514 88-390 (400)
89 KOG1840 Kinesin light chain [C 99.7 1.1E-15 2.4E-20 144.1 24.6 216 318-534 200-465 (508)
90 PF12569 NARP1: NMDA receptor- 99.7 2.3E-14 5E-19 137.2 33.7 296 109-413 5-335 (517)
91 TIGR03302 OM_YfiO outer membra 99.7 8.5E-16 1.8E-20 136.4 20.6 190 38-278 28-232 (235)
92 COG3071 HemY Uncharacterized e 99.7 8.4E-13 1.8E-17 116.2 35.5 292 147-482 90-391 (400)
93 TIGR03302 OM_YfiO outer membra 99.7 1.2E-14 2.6E-19 129.0 23.4 185 212-413 30-233 (235)
94 KOG2047 mRNA splicing factor [ 99.7 5.1E-11 1.1E-15 111.1 46.4 366 141-515 248-688 (835)
95 PRK15359 type III secretion sy 99.7 3.2E-15 7E-20 119.6 14.7 125 404-532 14-139 (144)
96 KOG3060 Uncharacterized conser 99.7 6.5E-14 1.4E-18 115.2 21.3 182 212-393 49-235 (289)
97 PRK14720 transcript cleavage f 99.6 5E-14 1.1E-18 140.9 24.5 254 220-518 36-310 (906)
98 PRK15359 type III secretion sy 99.6 6.3E-15 1.4E-19 118.0 14.5 125 235-362 13-138 (144)
99 KOG2047 mRNA splicing factor [ 99.6 2.3E-11 5.1E-16 113.3 39.3 400 109-514 103-615 (835)
100 PRK04841 transcriptional regul 99.6 4.3E-12 9.2E-17 136.3 40.4 298 221-519 415-765 (903)
101 KOG1130 Predicted G-alpha GTPa 99.6 5.9E-14 1.3E-18 123.4 20.7 307 215-536 17-372 (639)
102 PRK10370 formate-dependent nit 99.6 5.5E-14 1.2E-18 118.8 19.6 129 396-525 52-184 (198)
103 KOG3060 Uncharacterized conser 99.6 2.3E-12 4.9E-17 106.3 26.1 183 279-461 48-234 (289)
104 PRK04841 transcriptional regul 99.6 1.2E-11 2.6E-16 132.8 39.8 340 110-485 376-764 (903)
105 PRK14720 transcript cleavage f 99.6 5.6E-13 1.2E-17 133.5 26.8 263 138-451 28-310 (906)
106 COG5010 TadD Flp pilus assembl 99.6 4.2E-13 9.2E-18 111.8 20.3 167 308-476 58-226 (257)
107 PRK10370 formate-dependent nit 99.6 2.9E-13 6.4E-18 114.4 19.6 153 220-383 21-177 (198)
108 KOG4340 Uncharacterized conser 99.6 1.4E-12 3E-17 109.9 22.4 281 117-441 19-333 (459)
109 COG5010 TadD Flp pilus assembl 99.6 7.6E-13 1.6E-17 110.3 20.2 178 230-408 48-227 (257)
110 KOG1128 Uncharacterized conser 99.5 6.9E-13 1.5E-17 125.3 20.4 221 246-482 395-617 (777)
111 TIGR02552 LcrH_SycD type III s 99.5 2.3E-13 4.9E-18 109.2 14.9 127 404-531 4-131 (135)
112 PF04733 Coatomer_E: Coatomer 99.5 7.7E-13 1.7E-17 118.4 19.3 258 51-384 9-270 (290)
113 KOG1128 Uncharacterized conser 99.5 5.5E-13 1.2E-17 126.0 18.5 219 283-516 398-618 (777)
114 PF04733 Coatomer_E: Coatomer 99.5 7.7E-13 1.7E-17 118.4 17.1 255 221-485 7-269 (290)
115 PRK15179 Vi polysaccharide bio 99.5 1.9E-12 4.2E-17 129.0 21.2 151 232-382 69-220 (694)
116 KOG0553 TPR repeat-containing 99.5 4.8E-13 1E-17 113.7 13.8 116 418-534 82-198 (304)
117 PRK15179 Vi polysaccharide bio 99.5 3.3E-12 7.1E-17 127.4 20.6 137 311-448 80-218 (694)
118 KOG1130 Predicted G-alpha GTPa 99.5 1.7E-12 3.7E-17 114.4 16.3 285 147-481 23-344 (639)
119 TIGR02552 LcrH_SycD type III s 99.5 1.6E-12 3.6E-17 104.2 15.2 115 237-351 5-120 (135)
120 PRK10866 outer membrane biogen 99.5 2.8E-11 6E-16 105.8 21.5 200 25-275 14-238 (243)
121 KOG0553 TPR repeat-containing 99.4 3.5E-12 7.6E-17 108.5 14.7 112 218-329 84-195 (304)
122 PRK15363 pathogenicity island 99.4 9.3E-12 2E-16 97.0 14.6 98 384-482 36-133 (157)
123 PRK15363 pathogenicity island 99.4 9.2E-12 2E-16 97.0 14.6 101 280-380 32-133 (157)
124 COG4783 Putative Zn-dependent 99.4 1.3E-10 2.8E-15 105.7 23.8 142 221-379 312-454 (484)
125 COG4783 Putative Zn-dependent 99.4 4.3E-10 9.4E-15 102.3 25.8 152 246-413 303-455 (484)
126 PF13525 YfiO: Outer membrane 99.4 4.2E-11 9.1E-16 102.4 17.5 175 40-268 2-197 (203)
127 KOG2053 Mitochondrial inherita 99.4 1.2E-07 2.6E-12 92.7 41.4 427 53-517 19-539 (932)
128 PRK10866 outer membrane biogen 99.3 1.7E-09 3.6E-14 94.7 22.7 172 217-407 34-236 (243)
129 PLN03088 SGT1, suppressor of 99.3 8.5E-11 1.8E-15 109.6 15.4 110 422-532 7-117 (356)
130 PLN03088 SGT1, suppressor of 99.3 1.2E-10 2.7E-15 108.6 16.1 111 219-329 6-116 (356)
131 PF09976 TPR_21: Tetratricopep 99.3 1.2E-10 2.6E-15 94.0 13.9 132 4-168 14-145 (145)
132 PF13525 YfiO: Outer membrane 99.3 9.8E-10 2.1E-14 94.0 20.2 79 218-296 8-92 (203)
133 COG4785 NlpI Lipoprotein NlpI, 99.3 1.7E-09 3.6E-14 87.3 19.1 100 285-384 67-167 (297)
134 KOG1941 Acetylcholine receptor 99.3 3.9E-09 8.4E-14 92.0 22.4 293 219-512 10-358 (518)
135 TIGR02795 tol_pal_ybgF tol-pal 99.2 2.6E-10 5.7E-15 89.2 13.6 108 418-526 3-117 (119)
136 KOG1070 rRNA processing protei 99.2 8.6E-09 1.9E-13 104.8 25.7 217 302-519 1443-1668(1710)
137 COG3898 Uncharacterized membra 99.2 5.8E-07 1.3E-11 79.7 32.8 288 222-514 91-392 (531)
138 COG3898 Uncharacterized membra 99.2 3.2E-07 6.9E-12 81.3 31.1 259 219-482 124-393 (531)
139 KOG3617 WD40 and TPR repeat-co 99.2 7E-08 1.5E-12 93.2 28.4 337 118-511 738-1171(1416)
140 COG4235 Cytochrome c biogenesi 99.2 3E-09 6.5E-14 91.7 16.7 127 399-526 138-268 (287)
141 PRK02603 photosystem I assembl 99.1 4.3E-09 9.3E-14 87.8 17.2 114 385-518 37-153 (172)
142 PF09976 TPR_21: Tetratricopep 99.1 2.8E-09 6.2E-14 85.9 15.6 118 394-512 22-145 (145)
143 COG4235 Cytochrome c biogenesi 99.1 2.5E-09 5.3E-14 92.3 15.5 119 230-348 137-259 (287)
144 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.2E-09 4.7E-14 84.0 14.1 102 219-320 6-113 (119)
145 KOG3081 Vesicle coat complex C 99.1 1.1E-07 2.4E-12 79.8 24.4 254 221-485 14-275 (299)
146 KOG1070 rRNA processing protei 99.1 7.8E-08 1.7E-12 98.1 28.0 215 267-483 1442-1665(1710)
147 PF14938 SNAP: Soluble NSF att 99.1 1.1E-08 2.3E-13 92.8 20.4 130 389-519 120-271 (282)
148 PF14938 SNAP: Soluble NSF att 99.1 4.6E-09 1E-13 95.2 17.1 183 357-540 42-253 (282)
149 COG0457 NrfG FOG: TPR repeat [ 99.1 1.1E-06 2.4E-11 79.2 33.1 222 262-484 36-268 (291)
150 COG4785 NlpI Lipoprotein NlpI, 99.1 2.4E-08 5.2E-13 80.8 18.7 194 215-412 65-266 (297)
151 KOG3617 WD40 and TPR repeat-co 99.1 2.1E-06 4.5E-11 83.5 34.4 131 114-275 832-993 (1416)
152 PRK10803 tol-pal system protei 99.1 5.1E-09 1.1E-13 92.1 15.8 110 418-528 143-260 (263)
153 PRK15331 chaperone protein Sic 99.1 2.9E-09 6.3E-14 83.5 12.6 116 415-532 35-151 (165)
154 PRK15331 chaperone protein Sic 99.1 4.2E-09 9.2E-14 82.6 13.0 96 283-378 37-133 (165)
155 KOG1941 Acetylcholine receptor 99.1 1.4E-07 3E-12 82.7 23.3 302 142-481 7-360 (518)
156 PF13414 TPR_11: TPR repeat; P 99.1 9.7E-10 2.1E-14 75.9 8.5 65 452-516 3-69 (69)
157 KOG3081 Vesicle coat complex C 99.1 1.2E-07 2.5E-12 79.7 21.8 50 115-164 15-64 (299)
158 KOG2053 Mitochondrial inherita 99.1 1.5E-06 3.2E-11 85.4 32.4 290 223-514 17-337 (932)
159 PF13414 TPR_11: TPR repeat; P 99.1 9.5E-10 2.1E-14 75.9 7.9 67 416-483 2-69 (69)
160 cd00189 TPR Tetratricopeptide 99.0 3.5E-09 7.6E-14 79.3 11.6 94 387-481 4-97 (100)
161 KOG2471 TPR repeat-containing 99.0 5.9E-07 1.3E-11 81.9 27.1 112 217-328 242-380 (696)
162 CHL00033 ycf3 photosystem I as 99.0 8.1E-09 1.7E-13 85.9 14.5 100 366-466 15-120 (168)
163 PRK02603 photosystem I assembl 99.0 1.3E-08 2.9E-13 84.9 15.6 117 348-485 33-153 (172)
164 PF12895 Apc3: Anaphase-promot 99.0 8.1E-10 1.8E-14 79.5 7.1 81 228-309 2-84 (84)
165 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.5E-14 74.4 7.4 63 221-283 3-65 (65)
166 COG0457 NrfG FOG: TPR repeat [ 99.0 8.8E-07 1.9E-11 79.8 29.0 222 228-450 36-268 (291)
167 KOG0543 FKBP-type peptidyl-pro 99.0 5.8E-09 1.3E-13 93.3 13.6 127 354-481 212-355 (397)
168 PF12895 Apc3: Anaphase-promot 99.0 1.3E-09 2.9E-14 78.4 7.8 79 432-511 3-84 (84)
169 cd00189 TPR Tetratricopeptide 99.0 6.7E-09 1.4E-13 77.8 12.2 94 221-314 6-99 (100)
170 PF13432 TPR_16: Tetratricopep 99.0 1.9E-09 4.1E-14 73.3 8.0 63 457-519 2-65 (65)
171 PRK11906 transcriptional regul 99.0 5.5E-08 1.2E-12 89.5 19.7 156 219-374 259-431 (458)
172 CHL00033 ycf3 photosystem I as 99.0 1.4E-08 3.1E-13 84.4 14.5 100 229-328 13-117 (168)
173 PRK10153 DNA-binding transcrip 99.0 1.9E-08 4.1E-13 97.8 17.4 134 387-520 343-488 (517)
174 KOG1914 mRNA cleavage and poly 99.0 2.4E-05 5.3E-10 72.8 38.8 416 40-518 17-505 (656)
175 PRK10153 DNA-binding transcrip 99.0 3.3E-08 7.1E-13 96.2 18.7 144 242-386 330-489 (517)
176 COG4105 ComL DNA uptake lipopr 99.0 2.3E-07 4.9E-12 78.5 20.9 192 40-282 31-237 (254)
177 PRK10803 tol-pal system protei 99.0 2.4E-08 5.2E-13 87.9 15.7 101 219-319 146-253 (263)
178 KOG0543 FKBP-type peptidyl-pro 99.0 2.3E-08 4.9E-13 89.6 14.8 127 221-347 214-357 (397)
179 COG4105 ComL DNA uptake lipopr 98.9 4E-07 8.7E-12 77.0 20.7 66 218-283 37-105 (254)
180 COG4700 Uncharacterized protei 98.9 2.8E-07 6E-12 72.9 18.3 151 360-511 66-219 (251)
181 KOG4648 Uncharacterized conser 98.9 6.5E-10 1.4E-14 96.0 4.1 230 221-458 103-341 (536)
182 PRK11906 transcriptional regul 98.9 8.5E-08 1.8E-12 88.3 17.9 171 143-344 257-435 (458)
183 KOG1914 mRNA cleavage and poly 98.9 5.5E-05 1.2E-09 70.5 36.6 392 134-533 13-486 (656)
184 KOG2300 Uncharacterized conser 98.9 5.3E-05 1.2E-09 69.6 40.6 436 43-510 7-552 (629)
185 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 5.2E-08 1.1E-12 90.4 15.2 119 389-511 175-294 (395)
186 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 8.5E-08 1.8E-12 89.0 15.8 112 362-476 181-292 (395)
187 COG1729 Uncharacterized protei 98.9 9.1E-08 2E-12 81.7 14.4 105 218-322 144-254 (262)
188 COG1729 Uncharacterized protei 98.9 8.1E-08 1.8E-12 82.0 14.0 108 420-528 144-258 (262)
189 PF14559 TPR_19: Tetratricopep 98.9 1.1E-08 2.3E-13 70.4 7.1 66 226-291 2-67 (68)
190 PF12688 TPR_5: Tetratrico pep 98.9 1.3E-07 2.7E-12 71.8 13.3 95 351-446 2-103 (120)
191 KOG1258 mRNA processing protei 98.8 0.00012 2.5E-09 69.7 36.1 359 135-533 73-489 (577)
192 KOG4648 Uncharacterized conser 98.8 2.1E-09 4.6E-14 92.9 3.3 238 289-539 103-356 (536)
193 KOG3616 Selective LIM binding 98.8 0.00016 3.5E-09 69.9 35.9 145 116-275 740-908 (1636)
194 PF12688 TPR_5: Tetratrico pep 98.8 1.7E-07 3.8E-12 71.0 12.6 94 250-343 2-102 (120)
195 KOG4234 TPR repeat-containing 98.8 1.1E-07 2.3E-12 76.0 11.4 106 424-530 102-213 (271)
196 KOG2471 TPR repeat-containing 98.8 1.8E-05 3.8E-10 72.6 26.7 431 12-479 111-682 (696)
197 PF14559 TPR_19: Tetratricopep 98.8 3.1E-08 6.7E-13 68.1 7.1 66 260-325 2-67 (68)
198 PF13512 TPR_18: Tetratricopep 98.8 4E-07 8.6E-12 70.0 13.5 105 420-525 13-139 (142)
199 COG4700 Uncharacterized protei 98.8 3.9E-06 8.5E-11 66.5 19.1 146 264-410 71-220 (251)
200 KOG2300 Uncharacterized conser 98.8 0.00017 3.7E-09 66.4 37.1 370 109-515 8-475 (629)
201 KOG4234 TPR repeat-containing 98.8 1.8E-07 3.9E-12 74.8 11.6 109 353-462 98-212 (271)
202 PF13512 TPR_18: Tetratricopep 98.7 3E-07 6.4E-12 70.8 12.0 113 39-179 6-137 (142)
203 PF13371 TPR_9: Tetratricopept 98.7 8.5E-08 1.8E-12 67.0 8.2 69 459-527 2-71 (73)
204 KOG4507 Uncharacterized conser 98.7 1.9E-06 4.2E-11 80.4 18.5 106 425-530 614-721 (886)
205 PF13371 TPR_9: Tetratricopept 98.7 1.4E-07 3.1E-12 65.8 8.6 68 222-289 2-69 (73)
206 KOG2796 Uncharacterized conser 98.7 4.6E-05 1E-09 64.2 23.8 224 248-485 68-319 (366)
207 KOG3616 Selective LIM binding 98.7 4.2E-05 9.1E-10 73.8 26.3 49 119-167 455-503 (1636)
208 KOG4555 TPR repeat-containing 98.6 1.7E-06 3.6E-11 64.1 12.4 95 422-517 48-147 (175)
209 KOG1586 Protein required for f 98.6 1.5E-05 3.2E-10 65.9 18.3 174 295-484 26-227 (288)
210 KOG0985 Vesicle coat protein c 98.5 0.00053 1.1E-08 69.0 30.5 254 222-511 1055-1338(1666)
211 KOG1586 Protein required for f 98.5 8.9E-05 1.9E-09 61.4 21.0 135 319-454 76-231 (288)
212 KOG2796 Uncharacterized conser 98.5 0.00012 2.6E-09 61.8 22.0 241 140-414 68-317 (366)
213 PF10345 Cohesin_load: Cohesin 98.5 0.0027 5.8E-08 64.7 40.2 415 34-513 50-605 (608)
214 PF07079 DUF1347: Protein of u 98.4 0.0013 2.8E-08 60.5 40.8 430 45-532 8-543 (549)
215 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 3E-06 6.6E-11 78.2 12.3 67 380-447 71-141 (453)
216 KOG0985 Vesicle coat protein c 98.4 0.0038 8.1E-08 63.2 32.9 238 106-371 1102-1375(1666)
217 PF05843 Suf: Suppressor of fo 98.4 1.4E-05 3.1E-10 72.1 15.2 141 386-526 4-148 (280)
218 PF06552 TOM20_plant: Plant sp 98.4 5.1E-06 1.1E-10 66.1 10.4 107 399-528 7-123 (186)
219 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2.1E-06 4.6E-11 79.2 9.5 70 412-482 70-142 (453)
220 KOG4555 TPR repeat-containing 98.4 1.3E-05 2.8E-10 59.5 11.4 96 219-314 47-146 (175)
221 PF10300 DUF3808: Protein of u 98.3 0.00025 5.3E-09 69.1 23.4 172 338-514 179-376 (468)
222 PF13424 TPR_12: Tetratricopep 98.3 1.7E-06 3.8E-11 61.2 6.4 63 452-514 5-75 (78)
223 KOG2610 Uncharacterized conser 98.3 8E-05 1.7E-09 65.1 16.8 113 330-443 117-234 (491)
224 PF05843 Suf: Suppressor of fo 98.3 4.3E-05 9.2E-10 69.1 16.1 136 285-420 3-144 (280)
225 PF06552 TOM20_plant: Plant sp 98.3 9.3E-06 2E-10 64.7 10.1 85 366-451 7-113 (186)
226 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.0032 6.9E-08 57.9 35.0 216 304-522 289-539 (660)
227 PF13428 TPR_14: Tetratricopep 98.2 2.9E-06 6.4E-11 51.7 5.2 43 486-528 2-44 (44)
228 KOG1585 Protein required for f 98.2 0.00056 1.2E-08 57.3 19.6 161 250-410 32-217 (308)
229 PF13428 TPR_14: Tetratricopep 98.2 3.1E-06 6.7E-11 51.6 5.2 43 141-183 1-43 (44)
230 KOG1585 Protein required for f 98.2 0.00025 5.3E-09 59.3 17.2 115 226-340 121-251 (308)
231 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.0048 1E-07 56.7 32.4 372 129-514 30-495 (660)
232 COG2976 Uncharacterized protei 98.2 0.00015 3.3E-09 58.6 15.2 107 41-175 87-193 (207)
233 PF04184 ST7: ST7 protein; In 98.2 0.00015 3.3E-09 67.4 17.3 162 146-327 173-340 (539)
234 PF13424 TPR_12: Tetratricopep 98.2 1.9E-06 4.1E-11 61.0 4.2 64 417-481 5-75 (78)
235 KOG4642 Chaperone-dependent E3 98.2 2.6E-05 5.6E-10 64.7 11.0 92 221-312 16-107 (284)
236 KOG0530 Protein farnesyltransf 98.2 0.0023 5E-08 54.4 22.4 116 305-420 65-184 (318)
237 PF04184 ST7: ST7 protein; In 98.2 0.00019 4.2E-09 66.7 17.3 190 254-456 173-384 (539)
238 KOG4642 Chaperone-dependent E3 98.2 2.1E-05 4.6E-10 65.2 9.9 92 355-447 15-107 (284)
239 KOG2610 Uncharacterized conser 98.1 0.00015 3.3E-09 63.5 14.8 156 222-377 110-274 (491)
240 PF13281 DUF4071: Domain of un 98.1 0.00061 1.3E-08 62.6 19.2 141 388-529 184-349 (374)
241 KOG1258 mRNA processing protei 98.1 0.012 2.7E-07 56.4 31.0 115 232-346 62-181 (577)
242 PF13431 TPR_17: Tetratricopep 98.0 5.3E-06 1.1E-10 46.9 3.2 32 441-472 2-33 (34)
243 PRK13184 pknD serine/threonine 98.0 0.0096 2.1E-07 62.2 28.7 105 46-178 478-589 (932)
244 KOG1550 Extracellular protein 98.0 0.017 3.7E-07 57.9 30.0 246 228-484 262-541 (552)
245 PF13281 DUF4071: Domain of un 98.0 0.0043 9.4E-08 57.2 23.3 117 248-365 140-274 (374)
246 COG3118 Thioredoxin domain-con 98.0 0.0011 2.3E-08 57.7 18.0 147 45-263 136-286 (304)
247 KOG4507 Uncharacterized conser 98.0 0.00034 7.5E-09 66.0 15.9 106 211-316 209-316 (886)
248 KOG0890 Protein kinase of the 98.0 0.059 1.3E-06 60.4 35.4 365 48-460 1388-1797(2382)
249 PF00515 TPR_1: Tetratricopept 98.0 1.4E-05 3.1E-10 45.6 3.9 33 43-75 1-33 (34)
250 COG2976 Uncharacterized protei 97.9 0.0022 4.7E-08 52.1 17.2 119 401-520 70-194 (207)
251 PF07719 TPR_2: Tetratricopept 97.9 2.3E-05 5.1E-10 44.7 4.4 34 43-76 1-34 (34)
252 PF10345 Cohesin_load: Cohesin 97.9 0.038 8.2E-07 56.5 39.8 406 5-480 63-605 (608)
253 KOG0376 Serine-threonine phosp 97.9 2E-05 4.3E-10 72.7 5.9 107 222-328 11-117 (476)
254 KOG0890 Protein kinase of the 97.9 0.026 5.6E-07 63.0 29.3 363 113-531 1388-1801(2382)
255 KOG0545 Aryl-hydrocarbon recep 97.9 0.00073 1.6E-08 56.6 14.0 116 140-285 177-300 (329)
256 PF00515 TPR_1: Tetratricopept 97.9 3E-05 6.4E-10 44.2 4.3 33 486-518 2-34 (34)
257 PF02259 FAT: FAT domain; Int 97.9 0.0077 1.7E-07 57.3 23.5 285 222-517 5-341 (352)
258 KOG0530 Protein farnesyltransf 97.9 0.0079 1.7E-07 51.2 20.0 128 228-355 56-186 (318)
259 KOG0376 Serine-threonine phosp 97.9 3.4E-05 7.3E-10 71.2 6.6 109 424-533 11-120 (476)
260 KOG0545 Aryl-hydrocarbon recep 97.9 0.00048 1E-08 57.6 12.5 101 218-318 181-299 (329)
261 PF10300 DUF3808: Protein of u 97.9 0.0013 2.8E-08 64.1 17.8 116 227-342 245-373 (468)
262 PF13431 TPR_17: Tetratricopep 97.9 2.1E-05 4.5E-10 44.5 3.3 32 238-269 2-33 (34)
263 PF02259 FAT: FAT domain; Int 97.8 0.012 2.6E-07 56.0 24.1 48 486-533 253-306 (352)
264 COG3118 Thioredoxin domain-con 97.8 0.0018 3.8E-08 56.5 16.1 53 222-274 141-193 (304)
265 PF07719 TPR_2: Tetratricopept 97.8 4.2E-05 9E-10 43.7 4.5 33 486-518 2-34 (34)
266 PF08631 SPO22: Meiosis protei 97.8 0.026 5.7E-07 51.2 24.9 161 151-344 3-185 (278)
267 KOG1550 Extracellular protein 97.7 0.078 1.7E-06 53.3 29.7 277 231-518 228-542 (552)
268 PF03704 BTAD: Bacterial trans 97.6 0.0023 5E-08 51.7 13.2 90 220-309 11-122 (146)
269 KOG0551 Hsp90 co-chaperone CNS 97.6 0.00046 1E-08 60.5 9.2 116 36-178 74-190 (390)
270 COG2909 MalT ATP-dependent tra 97.6 0.12 2.6E-06 52.5 27.5 228 283-511 415-685 (894)
271 PF13181 TPR_8: Tetratricopept 97.5 0.00015 3.2E-09 41.3 3.9 33 486-518 2-34 (34)
272 PF03704 BTAD: Bacterial trans 97.5 0.0031 6.6E-08 51.0 13.1 60 419-479 64-123 (146)
273 PRK13184 pknD serine/threonine 97.5 0.085 1.9E-06 55.4 26.1 329 146-512 480-867 (932)
274 COG0790 FOG: TPR repeat, SEL1 97.5 0.054 1.2E-06 49.8 22.6 158 226-390 52-230 (292)
275 COG0790 FOG: TPR repeat, SEL1 97.5 0.062 1.4E-06 49.4 22.9 128 332-466 93-236 (292)
276 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0028 6.1E-08 55.9 12.5 93 389-482 87-183 (390)
277 PF08424 NRDE-2: NRDE-2, neces 97.5 0.011 2.4E-07 54.7 17.3 109 236-344 6-130 (321)
278 PF13181 TPR_8: Tetratricopept 97.4 0.00025 5.5E-09 40.3 3.8 32 44-75 2-33 (34)
279 PF08631 SPO22: Meiosis protei 97.4 0.095 2.1E-06 47.6 25.6 62 319-380 86-151 (278)
280 KOG1308 Hsp70-interacting prot 97.4 0.0002 4.4E-09 63.1 4.4 91 394-485 125-215 (377)
281 COG2909 MalT ATP-dependent tra 97.4 0.21 4.4E-06 50.9 34.2 302 42-408 346-684 (894)
282 PF04910 Tcf25: Transcriptiona 97.4 0.034 7.4E-07 52.1 19.0 152 136-299 35-194 (360)
283 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0016 3.4E-08 40.9 6.5 47 487-533 3-49 (53)
284 KOG2396 HAT (Half-A-TPR) repea 97.3 0.16 3.6E-06 47.9 36.8 78 107-184 104-183 (568)
285 KOG3364 Membrane protein invol 97.3 0.0059 1.3E-07 46.2 10.3 83 451-533 31-119 (149)
286 PF04910 Tcf25: Transcriptiona 97.2 0.035 7.5E-07 52.1 17.0 168 240-415 31-225 (360)
287 PF13174 TPR_6: Tetratricopept 97.2 0.00085 1.8E-08 37.8 4.2 32 44-75 1-32 (33)
288 KOG1308 Hsp70-interacting prot 97.1 0.00055 1.2E-08 60.5 4.3 93 222-314 121-213 (377)
289 PF13174 TPR_6: Tetratricopept 97.1 0.0009 2E-08 37.6 3.8 32 487-518 2-33 (33)
290 PF08424 NRDE-2: NRDE-2, neces 97.1 0.06 1.3E-06 49.9 17.7 109 270-378 6-130 (321)
291 COG4649 Uncharacterized protei 97.1 0.045 9.8E-07 43.6 13.7 145 111-292 61-209 (221)
292 KOG2396 HAT (Half-A-TPR) repea 97.0 0.32 6.9E-06 46.1 35.6 85 449-533 457-544 (568)
293 PF13176 TPR_7: Tetratricopept 97.0 0.0011 2.4E-08 38.1 3.5 29 45-73 1-29 (36)
294 PF13176 TPR_7: Tetratricopept 97.0 0.00088 1.9E-08 38.5 2.8 27 488-514 2-28 (36)
295 KOG2041 WD40 repeat protein [G 96.9 0.49 1.1E-05 46.7 26.9 190 120-341 675-877 (1189)
296 KOG3783 Uncharacterized conser 96.9 0.093 2E-06 50.1 16.6 90 233-324 251-344 (546)
297 KOG0128 RNA-binding protein SA 96.9 0.63 1.4E-05 47.1 29.3 372 134-514 106-526 (881)
298 KOG1538 Uncharacterized conser 96.8 0.23 5.1E-06 48.4 18.5 109 222-341 710-829 (1081)
299 PF14561 TPR_20: Tetratricopep 96.8 0.027 5.9E-07 40.4 9.7 63 438-500 8-73 (90)
300 PF04781 DUF627: Protein of un 96.8 0.027 5.8E-07 41.4 9.6 101 222-345 3-107 (111)
301 PF07079 DUF1347: Protein of u 96.7 0.52 1.1E-05 44.1 39.9 186 290-478 305-521 (549)
302 PF09613 HrpB1_HrpK: Bacterial 96.7 0.18 3.9E-06 40.3 14.6 78 389-467 16-93 (160)
303 PF14561 TPR_20: Tetratricopep 96.7 0.038 8.2E-07 39.7 9.9 64 235-298 8-73 (90)
304 PF09613 HrpB1_HrpK: Bacterial 96.6 0.064 1.4E-06 42.7 11.7 79 222-300 17-95 (160)
305 PRK15180 Vi polysaccharide bio 96.6 0.65 1.4E-05 43.8 20.3 129 222-350 296-425 (831)
306 KOG1538 Uncharacterized conser 96.5 0.46 1E-05 46.5 18.6 81 223-308 564-657 (1081)
307 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.018 3.8E-07 36.2 6.5 36 251-286 3-38 (53)
308 KOG1464 COP9 signalosome, subu 96.5 0.29 6.3E-06 42.3 15.4 186 262-448 40-261 (440)
309 KOG2041 WD40 repeat protein [G 96.4 1.1 2.4E-05 44.5 25.3 80 284-375 797-877 (1189)
310 KOG1463 26S proteasome regulat 96.4 0.66 1.4E-05 41.7 18.7 282 4-347 7-318 (411)
311 KOG3824 Huntingtin interacting 96.3 0.02 4.2E-07 50.1 7.8 71 221-291 122-192 (472)
312 PF09986 DUF2225: Uncharacteri 96.3 0.059 1.3E-06 46.2 10.7 87 432-518 91-198 (214)
313 KOG3824 Huntingtin interacting 96.3 0.014 3.1E-07 50.9 6.6 68 391-459 124-191 (472)
314 KOG0128 RNA-binding protein SA 96.2 1.7 3.7E-05 44.1 34.2 406 41-511 111-560 (881)
315 PRK10941 hypothetical protein; 96.2 0.069 1.5E-06 47.5 10.7 75 456-530 185-260 (269)
316 TIGR02561 HrpB1_HrpK type III 96.1 0.39 8.5E-06 37.6 13.1 73 394-467 21-93 (153)
317 smart00028 TPR Tetratricopepti 96.1 0.011 2.5E-07 32.6 4.0 31 487-517 3-33 (34)
318 smart00028 TPR Tetratricopepti 96.1 0.0096 2.1E-07 33.0 3.6 32 44-75 2-33 (34)
319 PRK10941 hypothetical protein; 96.1 0.09 1.9E-06 46.8 11.1 71 386-457 184-254 (269)
320 PF04781 DUF627: Protein of un 96.1 0.13 2.8E-06 37.9 9.8 103 255-379 2-107 (111)
321 KOG1464 COP9 signalosome, subu 96.1 0.85 1.8E-05 39.5 18.9 185 330-515 41-261 (440)
322 PF10602 RPN7: 26S proteasome 95.9 0.13 2.8E-06 42.8 10.6 107 37-171 30-143 (177)
323 COG4649 Uncharacterized protei 95.9 0.72 1.6E-05 37.1 16.2 126 219-344 62-195 (221)
324 COG3914 Spy Predicted O-linked 95.8 0.5 1.1E-05 45.8 14.9 126 402-528 50-185 (620)
325 COG5191 Uncharacterized conser 95.7 0.031 6.6E-07 49.0 6.3 87 238-324 96-183 (435)
326 KOG3783 Uncharacterized conser 95.6 2.3 4.9E-05 41.1 20.3 238 266-519 250-525 (546)
327 TIGR02561 HrpB1_HrpK type III 95.6 0.22 4.8E-06 39.0 10.0 77 223-299 18-94 (153)
328 PF09986 DUF2225: Uncharacteri 95.6 0.13 2.9E-06 44.1 9.9 103 16-137 92-194 (214)
329 COG4976 Predicted methyltransf 95.5 0.026 5.7E-07 47.2 4.9 54 432-485 9-62 (287)
330 KOG2422 Uncharacterized conser 95.5 1.8 3.9E-05 42.1 17.1 49 228-276 251-311 (665)
331 PRK15180 Vi polysaccharide bio 95.4 0.33 7.2E-06 45.6 11.9 126 325-451 298-424 (831)
332 PF12968 DUF3856: Domain of Un 95.4 0.81 1.7E-05 34.1 12.5 83 432-514 23-129 (144)
333 COG5159 RPN6 26S proteasome re 95.2 2 4.4E-05 37.7 19.2 62 5-66 7-68 (421)
334 PF04053 Coatomer_WDAD: Coatom 95.1 0.89 1.9E-05 44.1 14.7 53 108-167 321-373 (443)
335 PF12968 DUF3856: Domain of Un 95.1 0.98 2.1E-05 33.7 13.0 58 353-410 58-127 (144)
336 KOG3364 Membrane protein invol 95.0 0.69 1.5E-05 35.5 10.6 75 350-424 32-112 (149)
337 PF10602 RPN7: 26S proteasome 95.0 0.51 1.1E-05 39.2 11.0 97 418-515 37-143 (177)
338 PF04053 Coatomer_WDAD: Coatom 95.0 2.9 6.3E-05 40.6 17.6 157 222-408 268-427 (443)
339 COG5191 Uncharacterized conser 94.8 0.062 1.3E-06 47.2 5.3 86 271-356 95-182 (435)
340 KOG2422 Uncharacterized conser 94.6 4.9 0.00011 39.3 17.6 136 347-483 281-450 (665)
341 PF13374 TPR_10: Tetratricopep 94.6 0.078 1.7E-06 31.5 4.1 30 44-73 3-32 (42)
342 COG3914 Spy Predicted O-linked 94.6 2.9 6.2E-05 40.9 16.0 130 300-429 48-188 (620)
343 KOG4814 Uncharacterized conser 94.5 0.45 9.8E-06 46.5 10.7 95 218-312 357-457 (872)
344 PRK11619 lytic murein transgly 94.5 6.9 0.00015 40.3 42.1 166 332-511 295-465 (644)
345 KOG2581 26S proteasome regulat 94.4 4.4 9.5E-05 37.7 17.3 139 9-174 134-280 (493)
346 PRK11619 lytic murein transgly 94.4 7.2 0.00016 40.2 40.6 398 109-533 34-453 (644)
347 COG4976 Predicted methyltransf 94.3 0.082 1.8E-06 44.4 4.7 60 224-283 4-63 (287)
348 KOG0529 Protein geranylgeranyl 94.2 2.7 5.8E-05 39.2 14.4 172 157-356 45-235 (421)
349 PF15015 NYD-SP12_N: Spermatog 94.1 0.51 1.1E-05 43.6 9.6 108 45-167 178-288 (569)
350 KOG1310 WD40 repeat protein [G 93.8 0.21 4.6E-06 47.5 7.0 87 298-384 389-479 (758)
351 PF10579 Rapsyn_N: Rapsyn N-te 93.8 0.4 8.6E-06 32.8 6.4 61 43-131 6-66 (80)
352 KOG1310 WD40 repeat protein [G 93.8 0.35 7.7E-06 46.0 8.3 99 219-317 378-479 (758)
353 PF15015 NYD-SP12_N: Spermatog 93.7 1.3 2.9E-05 41.1 11.5 94 214-307 174-286 (569)
354 PF10516 SHNi-TPR: SHNi-TPR; 93.6 0.13 2.8E-06 29.7 3.3 30 44-73 2-31 (38)
355 PF11207 DUF2989: Protein of u 93.5 1 2.2E-05 37.6 9.7 76 295-370 118-198 (203)
356 PF13374 TPR_10: Tetratricopep 93.4 0.19 4.1E-06 29.8 4.2 28 487-514 4-31 (42)
357 KOG3807 Predicted membrane pro 93.4 5.8 0.00013 35.8 14.9 161 354-528 188-355 (556)
358 KOG0529 Protein geranylgeranyl 93.3 7 0.00015 36.6 17.7 140 400-539 46-203 (421)
359 PF04190 DUF410: Protein of un 93.2 6.1 0.00013 35.4 19.4 23 390-412 148-170 (260)
360 COG4455 ImpE Protein of avirul 93.1 1.2 2.6E-05 37.5 9.3 125 115-247 8-137 (273)
361 KOG2114 Vacuolar assembly/sort 93.0 12 0.00027 38.5 26.9 61 4-72 337-397 (933)
362 KOG1839 Uncharacterized protei 92.7 1.5 3.2E-05 47.2 11.7 127 218-344 935-1085(1236)
363 PF12862 Apc5: Anaphase-promot 92.7 0.96 2.1E-05 32.9 7.7 58 223-280 6-72 (94)
364 KOG3807 Predicted membrane pro 92.5 8 0.00017 35.0 16.7 193 251-457 186-401 (556)
365 COG1747 Uncharacterized N-term 92.1 12 0.00026 36.2 23.4 94 249-344 66-159 (711)
366 PF07720 TPR_3: Tetratricopept 92.0 0.77 1.7E-05 26.2 5.0 30 251-280 3-34 (36)
367 PF07720 TPR_3: Tetratricopept 91.9 0.59 1.3E-05 26.6 4.5 30 488-517 4-35 (36)
368 PF07721 TPR_4: Tetratricopept 91.9 0.27 5.9E-06 25.5 2.9 20 456-475 5-24 (26)
369 PF11207 DUF2989: Protein of u 91.9 4.4 9.5E-05 34.0 11.2 56 415-472 139-198 (203)
370 PF07721 TPR_4: Tetratricopept 91.8 0.24 5.2E-06 25.7 2.6 21 144-164 4-24 (26)
371 COG3629 DnrI DNA-binding trans 91.7 1.2 2.6E-05 39.7 8.4 63 249-311 153-215 (280)
372 PF04190 DUF410: Protein of un 91.7 9.4 0.0002 34.2 17.6 28 3-30 12-39 (260)
373 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.43 9.3E-06 27.5 3.8 28 487-514 3-30 (38)
374 KOG1839 Uncharacterized protei 91.6 2.4 5.2E-05 45.6 11.7 161 353-514 935-1128(1236)
375 PF12862 Apc5: Anaphase-promot 91.5 1.1 2.3E-05 32.7 6.8 27 353-379 44-70 (94)
376 PF12854 PPR_1: PPR repeat 91.4 0.54 1.2E-05 26.4 4.0 29 380-408 4-32 (34)
377 KOG1463 26S proteasome regulat 91.4 11 0.00024 34.3 21.0 56 220-275 9-74 (411)
378 COG2912 Uncharacterized conser 91.1 2.2 4.7E-05 37.6 9.2 70 255-324 187-256 (269)
379 PF10579 Rapsyn_N: Rapsyn N-te 90.9 3.9 8.4E-05 28.1 8.3 61 145-242 10-70 (80)
380 COG2912 Uncharacterized conser 90.8 1.4 3.1E-05 38.6 7.8 68 223-290 189-256 (269)
381 PF11817 Foie-gras_1: Foie gra 90.7 12 0.00025 33.4 16.5 58 454-511 180-244 (247)
382 PF04097 Nic96: Nup93/Nic96; 90.3 24 0.00052 36.4 25.0 150 255-409 264-440 (613)
383 smart00386 HAT HAT (Half-A-TPR 90.3 0.8 1.7E-05 25.0 4.2 31 499-529 1-31 (33)
384 COG5159 RPN6 26S proteasome re 89.7 14 0.0003 32.8 23.1 162 287-448 129-315 (421)
385 PF13041 PPR_2: PPR repeat fam 89.7 1.9 4.1E-05 26.7 5.9 26 386-411 6-31 (50)
386 TIGR03504 FimV_Cterm FimV C-te 89.2 2.2 4.7E-05 25.7 5.4 25 489-513 3-27 (44)
387 PF13041 PPR_2: PPR repeat fam 89.1 3.2 6.9E-05 25.7 6.6 44 350-393 3-48 (50)
388 KOG2063 Vacuolar assembly/sort 88.8 35 0.00077 36.2 28.2 63 4-69 310-372 (877)
389 KOG1497 COP9 signalosome, subu 88.7 10 0.00022 34.1 11.4 73 108-180 103-185 (399)
390 COG3629 DnrI DNA-binding trans 88.7 3.2 7E-05 37.1 8.5 62 418-480 154-215 (280)
391 PF10255 Paf67: RNA polymerase 88.4 1.2 2.6E-05 42.1 6.0 60 110-169 124-192 (404)
392 PF09670 Cas_Cas02710: CRISPR- 88.3 13 0.00028 35.5 13.0 61 218-278 134-198 (379)
393 PF12739 TRAPPC-Trs85: ER-Golg 88.2 19 0.00042 35.0 14.3 27 490-516 375-401 (414)
394 smart00386 HAT HAT (Half-A-TPR 87.9 1.7 3.7E-05 23.6 4.4 29 229-257 1-29 (33)
395 TIGR03504 FimV_Cterm FimV C-te 87.8 1.6 3.4E-05 26.3 4.2 26 456-481 3-28 (44)
396 PF12854 PPR_1: PPR repeat 86.9 2 4.3E-05 24.1 4.1 28 483-510 5-32 (34)
397 COG1747 Uncharacterized N-term 86.8 32 0.0007 33.5 24.0 173 353-530 69-250 (711)
398 smart00299 CLH Clathrin heavy 86.8 14 0.0003 29.3 15.7 47 294-340 18-64 (140)
399 COG4941 Predicted RNA polymera 86.7 25 0.00054 32.1 15.1 17 53-69 23-39 (415)
400 COG3947 Response regulator con 86.5 3.6 7.8E-05 36.4 7.3 54 255-308 285-338 (361)
401 KOG4014 Uncharacterized conser 86.3 17 0.00037 29.9 13.5 124 397-535 87-216 (248)
402 KOG0889 Histone acetyltransfer 86.2 98 0.0021 38.4 26.2 103 47-181 2486-2591(3550)
403 KOG2063 Vacuolar assembly/sort 86.1 51 0.0011 35.1 17.5 55 114-168 313-373 (877)
404 PRK12798 chemotaxis protein; R 85.3 35 0.00075 32.5 21.2 170 104-313 108-287 (421)
405 COG4941 Predicted RNA polymera 85.3 30 0.00065 31.7 16.2 191 333-531 213-411 (415)
406 PF11817 Foie-gras_1: Foie gra 85.2 9.1 0.0002 34.0 9.6 84 395-479 150-245 (247)
407 PF10373 EST1_DNA_bind: Est1 D 84.9 5.1 0.00011 36.4 8.3 61 437-497 1-62 (278)
408 KOG0276 Vesicle coat complex C 84.6 7.6 0.00016 38.3 9.1 50 116-169 645-694 (794)
409 COG3947 Response regulator con 84.3 11 0.00025 33.5 9.2 55 423-478 285-339 (361)
410 KOG2114 Vacuolar assembly/sort 83.9 39 0.00084 35.2 13.8 91 390-485 497-594 (933)
411 PF11846 DUF3366: Domain of un 83.7 6.3 0.00014 33.5 7.7 50 469-518 128-177 (193)
412 PF10373 EST1_DNA_bind: Est1 D 83.3 4.7 0.0001 36.7 7.3 62 402-464 1-62 (278)
413 KOG0276 Vesicle coat complex C 82.9 23 0.00049 35.2 11.4 79 352-446 616-694 (794)
414 PF14863 Alkyl_sulf_dimr: Alky 82.5 12 0.00026 29.6 8.1 53 481-533 66-118 (141)
415 PF10255 Paf67: RNA polymerase 82.5 47 0.001 31.8 15.3 59 353-411 125-192 (404)
416 PF00244 14-3-3: 14-3-3 protei 82.3 34 0.00074 30.1 13.6 45 469-513 143-197 (236)
417 KOG1920 IkappaB kinase complex 82.2 83 0.0018 34.4 21.4 24 110-133 679-702 (1265)
418 KOG0546 HSP90 co-chaperone CPR 81.8 3.5 7.7E-05 37.6 5.5 127 45-183 224-351 (372)
419 KOG4279 Serine/threonine prote 81.8 7.4 0.00016 39.4 8.0 20 432-451 380-399 (1226)
420 PF09670 Cas_Cas02710: CRISPR- 81.5 41 0.00088 32.3 12.9 60 353-412 134-198 (379)
421 KOG0889 Histone acetyltransfer 80.9 1.6E+02 0.0034 36.8 19.8 113 418-531 2737-2858(3550)
422 PF01535 PPR: PPR repeat; Int 80.3 3.3 7.2E-05 22.1 3.3 25 386-410 3-27 (31)
423 KOG4814 Uncharacterized conser 79.6 73 0.0016 32.2 27.5 89 356-445 360-455 (872)
424 PF01535 PPR: PPR repeat; Int 79.1 3.5 7.6E-05 22.0 3.2 26 144-169 3-28 (31)
425 COG4455 ImpE Protein of avirul 79.1 40 0.00087 28.9 13.6 61 390-451 8-68 (273)
426 smart00299 CLH Clathrin heavy 78.7 30 0.00066 27.3 14.7 49 392-442 16-64 (140)
427 PF04049 APC8: Anaphase promot 78.0 9.1 0.0002 30.4 6.2 67 4-70 13-101 (142)
428 TIGR03362 VI_chp_7 type VI sec 77.7 58 0.0013 29.9 12.8 158 4-170 102-279 (301)
429 PF09797 NatB_MDM20: N-acetylt 76.0 13 0.00028 35.5 7.9 108 233-340 201-310 (365)
430 PHA02537 M terminase endonucle 75.9 53 0.0012 28.6 11.6 47 486-533 170-225 (230)
431 PF12739 TRAPPC-Trs85: ER-Golg 75.7 82 0.0018 30.7 15.3 27 221-247 214-240 (414)
432 KOG4014 Uncharacterized conser 75.6 45 0.00097 27.6 15.5 185 247-447 32-233 (248)
433 TIGR00756 PPR pentatricopeptid 74.3 7.9 0.00017 21.1 3.9 26 386-411 3-28 (35)
434 cd02682 MIT_AAA_Arch MIT: doma 72.5 21 0.00046 24.5 6.0 28 503-530 31-58 (75)
435 PF00244 14-3-3: 14-3-3 protei 72.2 69 0.0015 28.2 16.3 46 435-480 143-197 (236)
436 TIGR00756 PPR pentatricopeptid 72.0 8.7 0.00019 21.0 3.7 27 144-170 3-29 (35)
437 KOG0292 Vesicle coat complex C 71.7 1.4E+02 0.0031 31.6 19.1 107 422-529 996-1128(1202)
438 KOG1920 IkappaB kinase complex 71.6 82 0.0018 34.5 12.5 46 118-167 861-906 (1265)
439 PF04348 LppC: LppC putative l 71.5 1.3 2.8E-05 44.4 0.0 59 108-166 24-86 (536)
440 KOG0546 HSP90 co-chaperone CPR 71.5 4.1 9E-05 37.2 3.1 80 454-533 277-357 (372)
441 KOG4279 Serine/threonine prote 71.4 31 0.00067 35.3 9.0 31 498-528 379-409 (1226)
442 TIGR03362 VI_chp_7 type VI sec 70.9 87 0.0019 28.8 17.4 162 108-278 100-279 (301)
443 PF14863 Alkyl_sulf_dimr: Alky 70.0 48 0.001 26.3 8.4 47 384-430 71-117 (141)
444 PF10938 YfdX: YfdX protein; 69.3 60 0.0013 26.3 9.2 125 45-169 4-145 (155)
445 PF13812 PPR_3: Pentatricopept 69.1 16 0.00035 19.8 4.3 26 386-411 4-29 (34)
446 COG3014 Uncharacterized protei 69.0 92 0.002 28.8 10.6 42 335-376 40-84 (449)
447 cd02683 MIT_1 MIT: domain cont 68.1 12 0.00025 26.0 4.1 32 42-73 5-36 (77)
448 TIGR02710 CRISPR-associated pr 68.0 1.1E+02 0.0025 29.0 12.8 54 221-274 136-196 (380)
449 PF11846 DUF3366: Domain of un 66.9 25 0.00055 29.8 7.0 43 372-414 133-175 (193)
450 PF04097 Nic96: Nup93/Nic96; 66.4 1.7E+02 0.0037 30.4 15.2 152 356-512 264-441 (613)
451 KOG4521 Nuclear pore complex, 65.7 2.2E+02 0.0047 31.5 17.6 213 116-345 893-1132(1480)
452 cd02682 MIT_AAA_Arch MIT: doma 65.5 15 0.00033 25.2 4.1 30 43-72 6-35 (75)
453 PF13226 DUF4034: Domain of un 65.0 1.1E+02 0.0023 27.7 11.3 135 222-367 7-150 (277)
454 PF02184 HAT: HAT (Half-A-TPR) 64.8 20 0.00042 19.8 3.6 19 470-488 5-23 (32)
455 PF10037 MRP-S27: Mitochondria 62.8 1.6E+02 0.0034 28.8 12.6 61 352-412 105-167 (429)
456 smart00101 14_3_3 14-3-3 homol 62.7 1.1E+02 0.0024 27.1 17.0 47 435-481 145-200 (244)
457 COG5187 RPN7 26S proteasome re 62.1 1.2E+02 0.0026 27.3 11.8 98 317-414 115-223 (412)
458 PF09205 DUF1955: Domain of un 62.0 75 0.0016 24.8 10.5 55 460-514 94-149 (161)
459 cd02681 MIT_calpain7_1 MIT: do 62.0 19 0.0004 24.9 4.1 32 42-73 5-36 (76)
460 KOG4151 Myosin assembly protei 61.9 45 0.00098 34.4 8.3 108 424-532 60-174 (748)
461 KOG2581 26S proteasome regulat 61.1 1.5E+02 0.0034 28.2 26.7 133 218-350 129-281 (493)
462 PF04212 MIT: MIT (microtubule 60.6 20 0.00044 24.1 4.2 28 45-72 7-34 (69)
463 PF10938 YfdX: YfdX protein; 60.4 17 0.00036 29.5 4.4 70 3-72 77-146 (155)
464 PRK15490 Vi polysaccharide bio 59.9 87 0.0019 31.7 9.8 79 227-307 20-98 (578)
465 PF01239 PPTA: Protein prenylt 59.4 27 0.00058 18.8 4.1 29 504-532 2-30 (31)
466 cd02680 MIT_calpain7_2 MIT: do 59.1 21 0.00046 24.5 4.0 15 432-446 20-34 (75)
467 KOG1497 COP9 signalosome, subu 57.9 1.5E+02 0.0033 27.1 13.0 106 40-169 100-212 (399)
468 PF10037 MRP-S27: Mitochondria 56.6 2E+02 0.0044 28.1 12.0 114 416-531 65-186 (429)
469 PHA02537 M terminase endonucle 56.5 96 0.0021 27.1 8.4 104 52-174 92-211 (230)
470 PRK12798 chemotaxis protein; R 56.2 1.9E+02 0.0042 27.8 26.2 209 322-532 118-344 (421)
471 cd02680 MIT_calpain7_2 MIT: do 55.4 29 0.00063 23.9 4.2 29 45-73 8-36 (75)
472 KOG4563 Cell cycle-regulated h 55.2 16 0.00035 33.7 3.7 67 2-68 42-108 (400)
473 cd02679 MIT_spastin MIT: domai 54.8 26 0.00055 24.4 3.9 16 498-513 21-36 (79)
474 PF10952 DUF2753: Protein of u 54.8 74 0.0016 24.4 6.4 29 45-73 3-31 (140)
475 smart00101 14_3_3 14-3-3 homol 54.7 1.5E+02 0.0034 26.2 16.9 23 255-277 7-29 (244)
476 PF13934 ELYS: Nuclear pore co 54.4 1E+02 0.0022 27.0 8.4 90 108-202 78-167 (226)
477 PF14929 TAF1_subA: TAF RNA Po 52.8 2.7E+02 0.0057 28.3 21.9 153 367-532 301-468 (547)
478 cd02679 MIT_spastin MIT: domai 52.5 33 0.00072 23.9 4.1 15 432-446 22-36 (79)
479 PF07219 HemY_N: HemY protein 52.2 75 0.0016 23.8 6.5 45 219-263 63-107 (108)
480 PRK15490 Vi polysaccharide bio 52.1 1.1E+02 0.0025 30.9 9.2 68 118-187 18-86 (578)
481 cd00280 TRFH Telomeric Repeat 51.8 1.4E+02 0.0031 24.9 11.9 42 222-264 118-159 (200)
482 PF02064 MAS20: MAS20 protein 51.3 56 0.0012 25.1 5.5 34 489-522 67-100 (121)
483 KOG2034 Vacuolar sorting prote 50.6 3.4E+02 0.0075 29.0 27.5 53 8-71 365-417 (911)
484 COG4259 Uncharacterized protei 50.0 99 0.0021 22.6 6.3 36 486-521 73-108 (121)
485 KOG0686 COP9 signalosome, subu 48.9 2.5E+02 0.0054 26.9 14.4 109 418-527 151-279 (466)
486 COG5536 BET4 Protein prenyltra 48.8 2E+02 0.0044 25.9 11.2 160 267-426 50-236 (328)
487 smart00671 SEL1 Sel1-like repe 47.8 47 0.001 18.2 3.9 13 331-343 20-32 (36)
488 cd02677 MIT_SNX15 MIT: domain 47.4 48 0.001 22.9 4.3 30 44-73 7-36 (75)
489 PF04212 MIT: MIT (microtubule 47.1 41 0.0009 22.5 4.0 19 495-513 15-33 (69)
490 PRK09687 putative lyase; Provi 46.9 2.3E+02 0.0049 25.9 29.3 128 384-521 143-270 (280)
491 PF09205 DUF1955: Domain of un 45.8 1.5E+02 0.0032 23.3 12.8 143 219-379 6-149 (161)
492 PF08238 Sel1: Sel1 repeat; I 45.3 56 0.0012 18.4 4.1 16 57-72 22-37 (39)
493 KOG0739 AAA+-type ATPase [Post 45.3 2.1E+02 0.0046 26.1 8.7 31 435-480 8-38 (439)
494 cd02681 MIT_calpain7_1 MIT: do 45.0 43 0.00094 23.1 3.8 18 496-513 17-34 (76)
495 KOG4459 Membrane-associated pr 44.6 1.2E+02 0.0026 29.3 7.7 188 42-242 30-222 (471)
496 cd02678 MIT_VPS4 MIT: domain c 44.4 49 0.0011 22.8 4.0 29 45-73 8-36 (75)
497 PF08626 TRAPPC9-Trs120: Trans 44.1 5.5E+02 0.012 29.5 14.7 83 432-514 359-474 (1185)
498 KOG2561 Adaptor protein NUB1, 43.7 1.6E+02 0.0034 28.4 8.1 94 420-514 166-296 (568)
499 smart00745 MIT Microtubule Int 43.6 54 0.0012 22.5 4.3 29 45-73 10-38 (77)
500 KOG4521 Nuclear pore complex, 43.3 5.1E+02 0.011 28.9 15.6 162 351-517 921-1135(1480)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-51 Score=373.54 Aligned_cols=452 Identities=17% Similarity=0.153 Sum_probs=415.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc-cccCCCh--HHHHHHHHHHHHhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-NVSAINE--NEVKYKIASCHFAL 121 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~--~~~~~~~a~~~~~~ 121 (561)
....++.-.|+.|+|.+|.+.....-..+|.+......+..+.....+.+...... .....++ .+.+..+|..+...
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 57888999999999999999999999999887766655544444433333332222 2222233 78888899999999
Q ss_pred CCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccc
Q 008550 122 GETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPN 200 (561)
Q Consensus 122 ~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (561)
|++++|+..++. +...|+..++|..+|.++...|+.+.|..+|..+++.+|+...+...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l------------------- 190 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL------------------- 190 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch-------------------
Confidence 999999999888 677799999999999999999999999999999999999877776655
Q ss_pred ccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 201 RSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
|..+...|+..+|..+|.+++...|.-..+|..+|.++..+|+...|+..|+++++++|
T Consensus 191 ---------------------gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP 249 (966)
T KOG4626|consen 191 ---------------------GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP 249 (966)
T ss_pred ---------------------hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC
Confidence 77778889999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH
Q 008550 281 YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (561)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 359 (561)
...++++++|.+|...+.++.|+.+|.+++...|++..++-++|.+|.. |..+-|+..|++++.+.|+.++++.++|.+
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
+...|+..+|..+|.+++.+.|.. .+.+++|.+|..+|++++|..+|.++++.+|..+.++.++|.+|.++ |++++|+
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq-gnl~~Ai 408 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ-GNLDDAI 408 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc-ccHHHHH
Confidence 999999999999999999999998 77999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.+|+.++.+.|...+++.++|..|..+|+.+.|+..|.+++..+|.- +++.++|.+|...|+..+|+..|+.+++++|+
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccCCCCCC
Q 008550 518 NEAAKKGLERLEKQMKGVDPDA 539 (561)
Q Consensus 518 ~~~~~~~l~~l~~~~~~~~~~~ 539 (561)
.+++..++......+- +|.+
T Consensus 489 fpdA~cNllh~lq~vc--dw~D 508 (966)
T KOG4626|consen 489 FPDAYCNLLHCLQIVC--DWTD 508 (966)
T ss_pred CchhhhHHHHHHHHHh--cccc
Confidence 9999999999887754 6655
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-47 Score=347.61 Aligned_cols=427 Identities=17% Similarity=0.182 Sum_probs=394.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCC--------------------------chhhhHHHHHHHHHHhhhch
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGET--------------------------SPHLKAENLIILGDSLFRDR 57 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~--------------------------~~~~~~~~~~~~g~~~~~~~ 57 (561)
..+.++.+++.|+|.+|...+..+-...+.+.+. ..+.-++++-.+|+++-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 4577889999999999999887765443322211 01444678888999999999
Q ss_pred hHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCC
Q 008550 58 EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPS 136 (561)
Q Consensus 58 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~ 136 (561)
++++|+..|+.+++++|++. +++..+|.++...|+.+.|...+.. +..
T Consensus 131 ~~~~al~~y~~aiel~p~fi-------------------------------da~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFI-------------------------------DAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hHHHHHHHHHHHHhcCchhh-------------------------------HHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 99999999999999987554 6899999999999999999998776 677
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
.|....+...+|.++...|+..+|..+|.+++...|...-+|..|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL----------------------------------- 224 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL----------------------------------- 224 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc-----------------------------------
Confidence 798889999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
|.++..+|+...|+..|+++++.+|+.+++++.+|.+|...+.++.|+.+|.+++...|.+..++-++|.+|+.+
T Consensus 225 -----g~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq 299 (966)
T KOG4626|consen 225 -----GCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ 299 (966)
T ss_pred -----chHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc
Confidence 788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
|..+-|+..|+++++..|+.++++.+++..+.. |+..+|..+|.+++.+.|.++++..++|.++..+|.+++|...|.+
T Consensus 300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 376 AQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 376 ~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
+++..|.. .+..++|.+|..+|++++|+.+|++++.+.|..++++.++|..|..+ |+.+.|+.+|.+++..+|...++
T Consensus 380 al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~-g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 380 ALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM-GDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred HHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh-hhHHHHHHHHHHHHhcCcHHHHH
Confidence 99999998 56999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
+.+||.+|...|+..+|+..|+.++++.|+. +++.+++.++.-..++.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 9999999999999999999999999999987 78888887776554443
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-43 Score=377.83 Aligned_cols=512 Identities=17% Similarity=0.157 Sum_probs=397.9
Q ss_pred HHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
..+..+...|+++.|+.....++...+. ....+..+|.+++..|++++|+..|+++++.+|.++......+.
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 405 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPD--------DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3455666777777777777766654221 23366677777777777777777777777777776666655565
Q ss_pred hhcccCCCCCCccccc-c------------------------------------cCCChHHHHHHHHHHHHhcCCHHHHH
Q 008550 86 SSLSTSNRSSSPNSFN-V------------------------------------SAINENEVKYKIASCHFALGETKAAI 128 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~-~------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~A~ 128 (561)
.....|+...+...+. . ..++...++..+|.++...|++++|+
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 5555565554433331 0 01122344555555555555555555
Q ss_pred HHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 129 VEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 129 ~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
..++++ ...|.+..+++.+|.++...|++++|+..|++++..+|.+..++..++.++...++..++...+.+.....+.
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 555552 3335555555555555555555555555555555555555555555555555555555554444443322221
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMD 287 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 287 (561)
.....+..+..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|.++..+.
T Consensus 566 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 639 (899)
T TIGR02917 566 ------EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639 (899)
T ss_pred ------chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 12233445777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (561)
.++.++...|++++|+..++++++..|++..++..++.++.. |++++|+..++.+....|.++..+..+|.++...|++
T Consensus 640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 888888888888888888888888888888888888888888 8888888888888888888888899999999999999
Q ss_pred hHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
++|+..|++++...|+...+..++.++...|++++|+..+++++...|+++.++..+|.++... |++++|+..|+++++
T Consensus 720 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ-KDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999999999999999999999999999998 999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
..|+++.++..++.++...|+ .+|+.++++++...|++ .++..+|.++...|++++|..+|+++++.+|.++.++..+
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 999999999999999999999 88999999999999887 7888999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
+.+....|
T Consensus 878 ~~~~~~~g 885 (899)
T TIGR02917 878 ALALLATG 885 (899)
T ss_pred HHHHHHcC
Confidence 99988876
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-42 Score=371.07 Aligned_cols=515 Identities=18% Similarity=0.162 Sum_probs=415.4
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++..+..+...|+++.|+.....++...+ ....+++.+|.+++..|++++|+..|++++..+|.++......
T Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~ 233 (899)
T TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTADP--------GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLAL 233 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 34455566667777777777766665522 2234778888888888888888888888888888877777666
Q ss_pred hhhhcccCCCCCCccccc-c--cCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhh
Q 008550 84 SRSSLSTSNRSSSPNSFN-V--SAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRG 159 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (561)
+...+..|++..+...+. . ..++.....+..|.++...|++++|+..++.+ ...|.....++.+|.++...|++++
T Consensus 234 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~ 313 (899)
T TIGR02917 234 ATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Confidence 777777777777655442 1 12233566777888888888888888888874 4446667777888888888888888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
|+..|.++++..|.+..++..++.++...++...+...+.......+. ........|.++...|++++|+..|+
T Consensus 314 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 387 (899)
T TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD------DPAALSLLGEAYLALGDFEKAAEYLA 387 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888888888888888888888777766655443332 12233455888899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
++++.+|+++.++..+|.++...|++++|+..+.++++..|........++..+...|++++|+..++++....|.++.+
T Consensus 388 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 467 (899)
T TIGR02917 388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999999999999999999999888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (561)
+..+|.++.. |++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++...|.+ .++..++.++...|
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 8888888888 888899999988888888888888888888888888888888888888888876 56788888888888
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++++|+..+++++..+|.+...+..++.++... |++++|+..+++++...|.++.++..+|.++...|++++|+..|++
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK-GQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888888888888888888888888887 8888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+++..|.+ ..+..+|.++...|++++|...|+++++.+|++..++..++.+....+
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 88888766 778888888888888888888888888888888888888877776554
No 5
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=287.99 Aligned_cols=539 Identities=28% Similarity=0.350 Sum_probs=457.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCC-CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGE-TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
+|..++.+...+.++..+-++..+..+..+++. .+++........+....++.+.|..|+..|..++.+..
T Consensus 3 ~ia~~~~~~~~~l~e~v~~~~~ll~Tvs~n~~~~~~~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~-------- 74 (564)
T KOG1174|consen 3 LFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRR-------- 74 (564)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhHHHhcCCccccCchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhH--------
Confidence 567788888888999988888888887666555 47888888888889999999999999999999988731
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+.....+... ....+...+.+.+..+..+.||...++-+.|+..+..++...+.+...+.++..+-.-++..+++-
T Consensus 75 -s~~r~s~~~~~--s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl 151 (564)
T KOG1174|consen 75 -LMMRHKNAVLV--AIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVL 151 (564)
T ss_pred -hhccccccccc--cccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHH
Confidence 11111111111 111123445668899999999999999999999999998888888999999999988888889999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
.|...+..+|--..+...+..+.....+.....-.... .+...+..|...+..|.++....-+..+..++-...
T Consensus 152 ~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~------~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~ 225 (564)
T KOG1174|consen 152 AYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAAT------VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDN 225 (564)
T ss_pred hhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhhee------cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhh
Confidence 99999999998888877777776655444332222111 112233344444444555544445555566666777
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
...|+|...+..+|.+++..|++++|+..|+++..++|......-.+|.++...|+++.-..+...++........-|+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988778888887
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHH
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 400 (561)
-+..... +++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|.. +.|.++..+|...|++.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 7777666 999999999999999999999999999999999999999999999999999987 88999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAKALKLVG-DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
+|.-..+.++...|.++.++..+| .++.....--++|.+.+++++.+.|....+...++.++...|.+.+++.++++.+
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 999999999999999999999997 5555443556999999999999999999999999999999999999999999999
Q ss_pred hhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCCCCCCCccchhhhccccCCchhcc
Q 008550 480 KDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDAPEEDEENEVEDAEGDQEETD 559 (561)
Q Consensus 480 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (561)
...|+...+..+|+++...+.+.+|.++|..|+.++|++..+...+.++.+..+ ++++.++.++..++|.++++|+++
T Consensus 466 ~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~--~~DATdE~D~~~V~D~~G~~EE~~ 543 (564)
T KOG1174|consen 466 IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD--ESDATDESDQQSVNDLTGLCEETN 543 (564)
T ss_pred hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC--CCCccccccccchhhccCcchhhh
Confidence 999999999999999999999999999999999999999999999999999987 888888888889999999999988
Q ss_pred cC
Q 008550 560 LL 561 (561)
Q Consensus 560 ~~ 561 (561)
|.
T Consensus 544 L~ 545 (564)
T KOG1174|consen 544 LQ 545 (564)
T ss_pred cc
Confidence 63
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.8e-41 Score=361.04 Aligned_cols=508 Identities=14% Similarity=0.064 Sum_probs=380.7
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+.|+++++.....++++.|......++.+.+.+ ++++..++.++...|++++|.+.+++++++.|.++....
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~--------p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~ 100 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPNN--------PDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRS 100 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCCC--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 458899999999999999999999998885443 447899999999999999999999999999998886543
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchh-HHHHHHHHHHhcCChhh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQ-MSLLMAKLYRNSRHNRG 159 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~ 159 (561)
......+ ...+....+.+|.++...|++++|+..++++ ...|.+.. .......+....|++++
T Consensus 101 ~~~~~~~---------------~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~ 165 (1157)
T PRK11447 101 SRTTMLL---------------STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPE 165 (1157)
T ss_pred HHHHHHh---------------cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHH
Confidence 2211110 0112233466777777888888888877774 33344432 22223333344577888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCC------------------------------
Q 008550 160 AVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH------------------------------ 209 (561)
Q Consensus 160 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 209 (561)
|+..|+++++.+|++..++..++.++...++..+++..+.+.....+...
T Consensus 166 A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~ 245 (1157)
T PRK11447 166 AINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVF 245 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHC
Confidence 88888888888888888888887777777776666555544322111000
Q ss_pred CChh---hH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 210 LDSS---RW---------------LHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 210 ~~~~---~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
.... .. ......|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~ 325 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQ 325 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 00 01113478889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChH--------------HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 272 FEKVRSIDPYIMT--------------YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 272 ~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
|+++++.+|++.. .....+.++...|++++|+..|++++..+|.++.++..+|.++.. |++++|+
T Consensus 326 l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 326 FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999998643 123457788999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhccCCChhHHHHHHH------------------------------------------HHHhcCChhHHHHHHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGN------------------------------------------LLLSMKRPEAAVIAFR 374 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~------------------------------------------~~~~~~~~~~A~~~~~ 374 (561)
..|+++++.+|.+..++..++. ++...|++++|+..|+
T Consensus 406 ~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 406 RYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998876654444 4456789999999999
Q ss_pred HhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH---------
Q 008550 375 GAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA--------- 444 (561)
Q Consensus 375 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a--------- 444 (561)
++++.+|++ .+++.++.++...|++++|+..+++++...|+++..++.++..+... +++++|+..++++
T Consensus 486 ~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhH
Confidence 999999987 56888999999999999999999999988888887776666655554 5555555544331
Q ss_pred -------------------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHH
Q 008550 445 -------------------------------LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLA 492 (561)
Q Consensus 445 -------------------------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la 492 (561)
++..|.++..+..+|.++...|++++|+..|+++++..|++ .++..++
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la 644 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLI 644 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22356666666777777777777777777777777777765 6777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++...|++++|++.|+++++..|+++.++..++.+....+
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 77777777777777777777777777777766666665543
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6e-40 Score=351.82 Aligned_cols=523 Identities=15% Similarity=0.116 Sum_probs=402.4
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCch--------hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSP--------HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYK 74 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 74 (561)
.+...++.++..|+++.|...++.++...+.+..... .......+.+|..+...|++++|+..|++++..+|
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p 143 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP 143 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence 4566778889999999999999999998654433110 00112347788999999999999999999999988
Q ss_pred cCccccccc-hhhhcccCCCCCCccccc-c--cCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc-----------
Q 008550 75 IVPKQNSTS-SRSSLSTSNRSSSPNSFN-V--SAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR----------- 139 (561)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~a~~~~~-~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~----------- 139 (561)
..+...... .......|+.+++...+. + ..++...+++.+|.++...|++++|+..++++...+.
T Consensus 144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~ 223 (1157)
T PRK11447 144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG 223 (1157)
T ss_pred CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 665322211 111122466666655552 2 2345578999999999999999999999987532211
Q ss_pred ------------------------chh--------------------HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcH
Q 008550 140 ------------------------NLQ--------------------MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (561)
Q Consensus 140 ------------------------~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 175 (561)
... ....+|.++...|++++|+..|+++++.+|++.
T Consensus 224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~ 303 (1157)
T PRK11447 224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDS 303 (1157)
T ss_pred HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 000 001347888899999999999999999999999
Q ss_pred HHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 008550 176 EAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR---------WLHRYVEAQCCIASNDYKGGLELFAELLQRFP 246 (561)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 246 (561)
.++..++.++...++..++...+.+.....|.... ... +......|.++...|++++|+..|++++..+|
T Consensus 304 ~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 304 EALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc-hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999998888777665554322 112 22234558889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH---------------------------------
Q 008550 247 NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL--------------------------------- 293 (561)
Q Consensus 247 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--------------------------------- 293 (561)
+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999987766555544
Q ss_pred ---------HhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 294 ---------KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 294 ---------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
...|++++|+..|+++++.+|+++.+++.++.++.. |++++|+..+++++...|.++..++.++..+...
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 356777777777777777777777777777777777 7777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 364 KRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+++++|+..++++....... .....++..+...|++++|+.+++ ..|.++..+..+|.++... |
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~-g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQR-G 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHc-C
Confidence 77777777776653321111 113355667777777777777665 5788889999999999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++ .++..+|.++...|++++|.+.|+++
T Consensus 618 ~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 618 DYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888876 78888999999999999999999999
Q ss_pred HhcCCccH------HHHHHHHHHHHh
Q 008550 512 LRINSQNE------AAKKGLERLEKQ 531 (561)
Q Consensus 512 l~~~p~~~------~~~~~l~~l~~~ 531 (561)
+...|+++ .++..++.+...
T Consensus 698 l~~~~~~~~~~~~a~~~~~~a~~~~~ 723 (1157)
T PRK11447 698 IPQAKSQPPSMESALVLRDAARFEAQ 723 (1157)
T ss_pred hhhCccCCcchhhHHHHHHHHHHHHH
Confidence 98876543 344445555543
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.1e-38 Score=321.84 Aligned_cols=434 Identities=15% Similarity=0.106 Sum_probs=268.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+..+..+|..+++.|+|++|+..|++++...|+ ...+..+|.|+..+|
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--------------------------------~~~~~n~a~~~~~l~ 174 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------------------------------PVYYSNRAACHNALG 174 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--------------------------------hHHHHHHHHHHHHhC
Confidence 556889999999999999999999999998753 236889999999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccc
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR 201 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (561)
++++|+..++. +...|.+..+++.+|.+|...|++++|+..|..+...++.+......+....... .+.......
T Consensus 175 ~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~a~~~~~~~ 250 (615)
T TIGR00990 175 DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKK----FAESKAKEI 250 (615)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH----HHHHHHHHH
Confidence 99999999999 4566999999999999999999999999999988877765443322221111100 000111111
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhh
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDA---IIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~ 278 (561)
....+... ....+. +..+ .......+...+......+|.....+..++..+. ..+++++|+..|++++..
T Consensus 251 l~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 251 LETKPENL-PSVTFV-----GNYL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HhcCCCCC-CCHHHH-----HHHH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 11111110 011111 1111 1111222222233333334443334444443322 235566666666666654
Q ss_pred C---CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH
Q 008550 279 D---PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI 354 (561)
Q Consensus 279 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~ 354 (561)
+ |....++..+|.++...|++++|+..+++++..+|..+..|..+|.++.. |++++|+..+++++..+|+++.+++
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2 44555666666666666666666666666666666666666666666666 6666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.+|.++...|++++|+..|++++.++|++ ..+..+|.++...|++++|+..+++++..+|+++.++..+|.++... |+
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~ 482 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ-NK 482 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cC
Confidence 66666666666666666666666666665 44666666666666666666666666666666666666666666665 66
Q ss_pred hHHHHHHHHHHHHhCCCCHHHH------HHHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHH
Q 008550 434 REKAKKFYESALRLEPGYLGAA------LALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEAL 505 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~------~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~ 505 (561)
+++|+..|++++.+.|.+...+ ...+.+ +...|++++|+..+++++..+|++ .++..+|.++...|++++|+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6666666666666665532221 112222 223466666666666666666655 45666666666666666666
Q ss_pred HHHHHHHhcCCccHH
Q 008550 506 SHYEAALRINSQNEA 520 (561)
Q Consensus 506 ~~~~~al~~~p~~~~ 520 (561)
.+|++++++.+...+
T Consensus 563 ~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 563 KLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhccHHH
Confidence 666666666654333
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.9e-36 Score=301.24 Aligned_cols=458 Identities=16% Similarity=0.073 Sum_probs=354.8
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+.+.+..++..|+|+.|+......+...+. ...+..+|.+|+..|+|++|+..|+++++++|+++
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~---------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~------ 194 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD---------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS------ 194 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH------
Confidence 567788999999999999999998886431 23789999999999999999999999999987544
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
.+++.+|.++..+|++++|+..+..+... +.+......+..... ...+..
T Consensus 195 -------------------------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~ 245 (615)
T TIGR00990 195 -------------------------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAES 245 (615)
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHH
Confidence 58999999999999999999988764322 222111111111111 134556
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
....+++..|.+...+..++....... ............ ..+......+.............++|++|+..|++++
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 246 KAKEILETKPENLPSVTFVGNYLQSFR-PKPRPAGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHcc-CCcchhhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 677777888876655555443321100 000000000000 0000111111111111111234578999999999999
Q ss_pred Hh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 243 QR---FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 243 ~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
.. .|....++..+|.++...|++++|+..|+++++.+|.....+..+|.++...|++++|+..++++++.+|+++.+
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 86 477788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC
Q 008550 320 FVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS 397 (561)
Q Consensus 320 ~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 397 (561)
++.+|.++.. |++++|+..|++++.++|++...+..+|.++...|++++|+..|++++...|++ .++..+|.++...|
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9999999999 999999999999999999999999999999999999999999999999999997 56999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHH------HHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKA------LKLVGDVH-ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
++++|+..|++++...|.+... +...+..+ ... |++++|+..+++++.++|++..++..+|.++...|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~-~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK-QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999875332 22233333 335 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 471 AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 471 A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
|+.+|++++++.+...- ......+.+|.....++.+..|.
T Consensus 561 Ai~~~e~A~~l~~~~~e-------~~~a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 561 ALKLFERAAELARTEGE-------LVQAISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred HHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999998876421 11222455666666666555444
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-35 Score=284.20 Aligned_cols=474 Identities=19% Similarity=0.194 Sum_probs=350.6
Q ss_pred hhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCc
Q 008550 18 DSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSP 97 (561)
Q Consensus 18 ~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~ 97 (561)
+.|......++...+ ..+-.++-.|.+.|..|+|..|+.+|++++.++|..+
T Consensus 147 ~~A~a~F~~Vl~~sp--------~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-------------------- 198 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSP--------DNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-------------------- 198 (1018)
T ss_pred HHHHHHHHHHHhhCC--------cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--------------------
Confidence 445554445554432 2333778888899999999999999999999987554
Q ss_pred ccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcC---ChhhHHHHHHHHHhcCCC
Q 008550 98 NSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR---HNRGAVACYKECLRHCPF 173 (561)
Q Consensus 98 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~l~~~p~ 173 (561)
++++..+|.|++++|+.+.|+..++. +..+|.+..++..||.+-.... .+..++..+.++...+|.
T Consensus 199 ----------aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~ 268 (1018)
T KOG2002|consen 199 ----------ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE 268 (1018)
T ss_pred ----------CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC
Confidence 34677889999999999999999998 5667999999999998877655 477899999999999999
Q ss_pred cHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHH
Q 008550 174 FIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHIL 252 (561)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 252 (561)
+|.+...|+..+...+++..+...+........... .....+|..|.++..+|+|++|..+|.++++.+|++ .-.+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 999999999999999999888777665554443222 222346677999999999999999999999999988 7888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+.+|+.|+..|+++.|..+|+++++..|++.+....+|.+|...+ ..+.|..++.++++..|.+.++|..++.++.
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998886 5688888999999999999888888888887
Q ss_pred hcCHhHHHHHHHHHHhc-----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----CCCh------HHHHHHHHH
Q 008550 329 RKDERGALSYAEKSIRI-----DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDL------RSYQGLVHS 392 (561)
Q Consensus 329 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------~~~~~l~~~ 392 (561)
.++...++.+|.+++.. .+-.++.+.++|..++..|++++|...|..+... +++. ..-++++.+
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 76666667777766632 2223455555555555556555555555555544 1111 123444444
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCC---------------------------------------------------------
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQ--------------------------------------------------------- 415 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~--------------------------------------------------------- 415 (561)
+...++++.|.+.|..++..+|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 44444444444444444444443
Q ss_pred -----------------------------------------------------------CHHHHHHHHHHHhhhcCChHH
Q 008550 416 -----------------------------------------------------------SAKALKLVGDVHASNASGREK 436 (561)
Q Consensus 416 -----------------------------------------------------------~~~~~~~l~~~~~~~~~~~~~ 436 (561)
|..+-..+|.++... |++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k-g~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK-GRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc-cCchH
Confidence 333333344444433 44444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---DDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
|+.+|.++.+...+++++|.++|.||..+|+|..|++.|+.+++..- +..+...||++++..|.+.+|..+..+++.
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444443333456778888888888888888888888887653 337888889999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhcc
Q 008550 514 INSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 514 ~~p~~~~~~~~l~~l~~~~~ 533 (561)
+.|.++.+.++++.+..++.
T Consensus 745 ~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 745 LAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred hCCccchHHhHHHHHHHHHH
Confidence 99999998888888776554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=294.48 Aligned_cols=508 Identities=13% Similarity=-0.020 Sum_probs=329.1
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+..+......|++++|+......+...|.+ ..+++.++..|...|++++|+..++++++.+|.+......+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n--------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDN--------IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3455666677799999999999999885433 44789999999999999999999999999999887776665
Q ss_pred hhhhcccCCCCCCcccc-cc--cCCChHHHHHHHHHH--------HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q 008550 84 SRSSLSTSNRSSSPNSF-NV--SAINENEVKYKIASC--------HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR 152 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~-~~--~~~~~~~~~~~~a~~--------~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~ 152 (561)
+.+ ++++.++..+ .+ ..++..++++.++.. |.+.++..+++. ...+...|......+.++++|.
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 333 6666666554 22 233446677777776 555555555555 2223333334445555677777
Q ss_pred hcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC-------------------------------cccHhHHhhccccc
Q 008550 153 NSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-------------------------------PKDIISLFAQTPNR 201 (561)
Q Consensus 153 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~ 201 (561)
.+|++++|+..+.++.+..|.+......|+.++.. .++...+...+...
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred HHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77887778888877777777777666666555443 22222222222222
Q ss_pred cCCCCCCCCChhhHHH---------------------------HHHHHHHHHHccCH-----------------------
Q 008550 202 SGRAPFDHLDSSRWLH---------------------------RYVEAQCCIASNDY----------------------- 231 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~---------------------------~~~~a~~~~~~~~~----------------------- 231 (561)
....+..+ .+..|.. .+..+..+..++++
T Consensus 274 ~~~~~~~~-~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 274 KPLFTTDA-QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred cccccCCC-ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 11111100 0011110 00001111222222
Q ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------------------
Q 008550 232 ------KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV------------------------------ 275 (561)
Q Consensus 232 ------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------------------ 275 (561)
.++......+.+..|.++..+...+......|++++|...|+.+
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 22222222222223444444444444444444444444444433
Q ss_pred -----------------------------------HhhCCC--ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 276 -----------------------------------RSIDPY--IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 276 -----------------------------------~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
+...|. ++.++..+|.++.. +++.+|+..+.+++...|++.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~- 510 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW- 510 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-
Confidence 333344 56667777777766 677777777777777777643
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 396 (561)
....++.++.. |++++|+..|+++....|. ...+..+|.++...|++++|+.+++++++..|.. ..+..++......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 24445555555 8888888888877665444 3456677778888888888888888888777766 3344555555666
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
|++++|+..++++++.+|+ +.++..+|.++.+. |++++|+..|++++.++|+++.++..+|.++...|++++|+..++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l-G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQR-HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888888888885 77888888888887 888888888888888888888888888888888888888888888
Q ss_pred HHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 477 RYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 477 ~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
++++..|++ .++..+|.++...|++++|+..|+++++++|++..+....+.+..
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 888888876 788888888888888888888888888888887666655555443
No 12
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=248.32 Aligned_cols=458 Identities=21% Similarity=0.270 Sum_probs=380.3
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
-...+.+|.++|..+.|+.|.-.++...... .......+-..+|..++- -..+.+.-..+
T Consensus 78 ~~~~y~laks~fd~kEf~Raa~fL~~~~s~k-----~~FL~lysk~La~~kk~~---------------e~~~~~l~~~~ 137 (559)
T KOG1155|consen 78 EKDIYLLAKSYFDCKEFERAAFFLQNCKSKK-----SAFLRLYSKYLAGEKKSE---------------EEMAELLGRLE 137 (559)
T ss_pred hcchhhhHhhhhhhHHHHHHHHHHHhcchHH-----HHHHHHHHHHHhhhHHHH---------------HHHHHhhccch
Confidence 3456889999999999999999988765521 111111111111111110 01111111122
Q ss_pred CHHHHHH---HHhc-C----CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 123 ETKAAIV---EMEG-I----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 123 ~~~~A~~---~l~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
.+..-.. .+.+ + .....++-.+++.|.++...|....|+..|..++...|.++.+|..|..+..........
T Consensus 138 ~~~~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l 217 (559)
T KOG1155|consen 138 SFSRINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL 217 (559)
T ss_pred hhhhhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH
Confidence 2222211 2221 1 112345667789999999999999999999999999999999999998887655444333
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNNIHILLEMAKVDAIIGKNDEAILNFE 273 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 273 (561)
...+ ....+|+..++.+.++....+.++++.-++..... .|.++..-...|.+.....++++|+..|+
T Consensus 218 ~~~l-----------~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Fe 286 (559)
T KOG1155|consen 218 VVGL-----------PSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFE 286 (559)
T ss_pred HhcC-----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3222 12278999999999999999999999999999988 89999999999999999999999999999
Q ss_pred HHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhH
Q 008550 274 KVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPG 352 (561)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~ 352 (561)
.+.+.+|...+-...+.++++-.++-.+-.-+.+.+..++.-.|+....+|+.|.. ++.++|+.+|+++++++|+...+
T Consensus 287 ei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a 366 (559)
T KOG1155|consen 287 EIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA 366 (559)
T ss_pred HHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH
Confidence 99999999998888999999888887777777788888999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
|..+|.-|..+++...|+..|+++++++|.+ ++|+++|++|.-++.+.=|+-+|+++....|+++..|..+|.||.+.
T Consensus 367 WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl- 445 (559)
T KOG1155|consen 367 WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL- 445 (559)
T ss_pred HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999987 89999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCh-HHHHHHHHHHHHcCCHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-~~~~~la~~~~~~g~~~~ 503 (561)
++.++|+++|.+++.....+..++..+|.+|.+.++..+|..+|++.++.. |.. .+...|+..+.+.+++++
T Consensus 446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 999999999999999988888999999999999999999999999999843 222 567779999999999999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|-.+...++.-++.-.++...+..+.+.+
T Consensus 526 As~Ya~~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 526 ASYYATLVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999888888888777777655
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=9.2e-34 Score=290.11 Aligned_cols=510 Identities=10% Similarity=-0.027 Sum_probs=380.4
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+..+..++..|++++|+..+...+...+ .....+..+|.+ +++++|+..|++++..+|++++....+
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--------~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~l 148 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRHP--------GDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLR 148 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCc--------ccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHH
Confidence 45678889999999999999999988743 222233434444 999999999999999999999988777
Q ss_pred hhh--------hcccCCCCCCcccccccCCC--hHHHHHHHHHHHHhcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHH
Q 008550 84 SRS--------SLSTSNRSSSPNSFNVSAIN--ENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYR 152 (561)
Q Consensus 84 ~~~--------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~ 152 (561)
+.. +...+....+.. .....+. +..+.+.++.+|..+|+|++|+..+.++. ..|.+...+..++.+|.
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~ 227 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLL 227 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 665 333333333343 3333333 35567777999999999999999988753 33555555555555554
Q ss_pred h-------------------------------cCChhhHHHHHHHHH---hcCCCcHHHHHHHHHHcCCc----------
Q 008550 153 N-------------------------------SRHNRGAVACYKECL---RHCPFFIEAITALAELGATP---------- 188 (561)
Q Consensus 153 ~-------------------------------~~~~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~---------- 188 (561)
. .|+.++|...+++.- ..+|.+......+++.+...
T Consensus 228 q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~ 307 (987)
T PRK09782 228 AGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQ 307 (987)
T ss_pred HhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhh
Confidence 4 444444444433322 12244444444444433220
Q ss_pred -------------------ccHhHHhhccccccCCC-------------CCCCCC-----------hhhHHHHHHHHHHH
Q 008550 189 -------------------KDIISLFAQTPNRSGRA-------------PFDHLD-----------SSRWLHRYVEAQCC 225 (561)
Q Consensus 189 -------------------~~~~~~~~~~~~~~~~~-------------~~~~~~-----------~~~~~~~~~~a~~~ 225 (561)
+... +.+.+....... +..... +.........+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 308 FADNRQYVVGATLPVLLKEGQYD-AAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hHHHHHHHHHHHHHHHHhccHHH-HHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0000 000000000000 000000 00011111123333
Q ss_pred HHccCHHHHHHHHHHH----------------------------------------------------------------
Q 008550 226 IASNDYKGGLELFAEL---------------------------------------------------------------- 241 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~---------------------------------------------------------------- 241 (561)
...|++++|..+|+++
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 4444444444444333
Q ss_pred -HHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 242 -LQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 242 -~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
+...|. ++.+++.+|.++.. +++.+|+..+.+++...|++. ....++.++...|++++|+..++++....|.+ .
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~ 543 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-E 543 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-H
Confidence 233455 78888999999987 899999999999999999764 46667888889999999999999988775554 5
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcC
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFS 397 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 397 (561)
.+..+|.++.. |++++|+.+++++++..|........++......|++++|+..++++++.+|+...+..+|.++.+.|
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 57888998888 99999999999999999998888877777777889999999999999999998777999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++++|+..|++++..+|+++.++..+|.++... |++++|+..|+++++.+|+++.++.++|.++...|++++|+..+++
T Consensus 624 ~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 624 NVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 478 YLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 478 ~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+++..|+. .+....|.+.....+++.|.+.+.+...++|+.. +....+.+....
T Consensus 703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~ 757 (987)
T PRK09782 703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTAN 757 (987)
T ss_pred HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhc
Confidence 99999988 8999999999999999999999999999999988 777777665543
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=4.3e-33 Score=279.78 Aligned_cols=359 Identities=13% Similarity=0.010 Sum_probs=287.9
Q ss_pred HhcCCHHHHHHHHhcCCCc----ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHH
Q 008550 119 FALGETKAAIVEMEGIPSK----ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISL 194 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~ 194 (561)
+++.+|+.---++...+.+ ..+.......+..+.+.|++++|...++.++...|.+..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l------------- 82 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRW------------- 82 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHH-------------
Confidence 3444444444444433222 23334455666777788888888888888888888888887776
Q ss_pred hhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 195 FAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
+.+....|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++
T Consensus 83 ---------------------------~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~ 135 (656)
T PRK15174 83 ---------------------------VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ 135 (656)
T ss_pred ---------------------------hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55566788888888888888888888888888888888888888888888888
Q ss_pred HHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-ChhH
Q 008550 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER-HIPG 352 (561)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~ 352 (561)
++..+|+++.++..++.++...|++++|+..+++++...|+++..+..++. +.. |++++|+..+++++...|. ....
T Consensus 136 Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 136 AWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 888888888888888888888888888888888888888888887766654 444 8888888888888887653 3344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHH----HHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKE----ALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
...++.++...|++++|+..+++++...|++ .++..+|.++...|++++ |+..|++++..+|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4556778888888888888888888888887 557888888888888885 78888888888888888888888888
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 506 (561)
... |++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|+. ..+..+|.++...|++++|+.
T Consensus 295 ~~~-g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 295 IRT-GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 887 888888888888888888888888888888888888888888888888888876 555667888888888888888
Q ss_pred HHHHHHhcCCccH
Q 008550 507 HYEAALRINSQNE 519 (561)
Q Consensus 507 ~~~~al~~~p~~~ 519 (561)
.|+++++.+|++.
T Consensus 374 ~l~~al~~~P~~~ 386 (656)
T PRK15174 374 VFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHhChhhc
Confidence 8888888887754
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=5.2e-33 Score=279.19 Aligned_cols=358 Identities=13% Similarity=0.034 Sum_probs=320.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc
Q 008550 111 KYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK 189 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~ 189 (561)
....+..+.+.|++++|+..++.+ ...|.++.++..+|.+....|++++|+..|++++..+|++..++..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~l-------- 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLV-------- 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHH--------
Confidence 445678889999999999999985 55699999999999999999999999999999999999999988776
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 269 (561)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+
T Consensus 117 --------------------------------a~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 117 --------------------------------ASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC
Q 008550 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~ 347 (561)
..+++++...|+++.++..++ .+...|++++|+..+++++...|.. ......++.++.. |++++|+..+++++...|
T Consensus 165 ~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 165 SLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999988887664 4888999999999999999987644 4445566777888 999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCChhH----HHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEA----AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
+++.++..+|.++...|++++ |+..|++++..+|++ .++..+|.++...|++++|+..+++++..+|+++.++..
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999996 899999999999998 579999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFA 496 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~ 496 (561)
+|.++... |++++|+..|++++..+|+++..+..+|.++...|++++|+..|+++++..|+. ++...+...+.
T Consensus 324 La~~l~~~-G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 324 YARALRQV-GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHH
Confidence 99999998 999999999999999999998877788999999999999999999999998875 34555556666
Q ss_pred HcCCHHHHHHHHHH
Q 008550 497 ATNMLQEALSHYEA 510 (561)
Q Consensus 497 ~~g~~~~A~~~~~~ 510 (561)
..+...+...+...
T Consensus 403 ~~~~~~~~~~W~~~ 416 (656)
T PRK15174 403 AVNLPPERLDWAWE 416 (656)
T ss_pred hcCCccchhhHHHH
Confidence 66555444334433
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-32 Score=241.02 Aligned_cols=425 Identities=18% Similarity=0.161 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+..+-.+|+-+|+.|+|++||++|.+|++.+|+-| ..+..++-||...|
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep-------------------------------iFYsNraAcY~~lg 163 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP-------------------------------IFYSNRAACYESLG 163 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc-------------------------------hhhhhHHHHHHHHh
Confidence 55777899999999999999999999999987543 46778999999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccc
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNR 201 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (561)
+|++.++...+ +...|+...+++..+..+...|++.+|+....-..-..-.+-.....+++-....-....+-+.
T Consensus 164 d~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~---- 239 (606)
T KOG0547|consen 164 DWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK---- 239 (606)
T ss_pred hHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh----
Confidence 99999998887 6777999999999999999999999998766544322211111111111110000000111111
Q ss_pred cCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Q 008550 202 SGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIG---KNDEAILNFEKVRS 277 (561)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~---~~~~A~~~~~~~~~ 277 (561)
.....+....+..++..|+.... .+.. . ...++.+ .+....-+.-+...+ .|.+|...+.+...
T Consensus 240 ~k~nr~p~lPS~~fi~syf~sF~----~~~~-------~-~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~ 307 (606)
T KOG0547|consen 240 LKENRPPVLPSATFIASYFGSFH----ADPK-------P-LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL 307 (606)
T ss_pred hcccCCCCCCcHHHHHHHHhhcc----cccc-------c-cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh
Confidence 11111111112222221111000 0000 0 0000000 000000000011111 23333333332221
Q ss_pred hCC----CC---------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH
Q 008550 278 IDP----YI---------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 278 ~~~----~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~ 343 (561)
... .+ ..++...|..++-.|+.-.|...|+.++.++|..+..+..++.+|.. .+.++....|.++.
T Consensus 308 ~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 308 GSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 100 00 23444455555555555555555555555555555555555555555 55555555555555
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|.++++|+.+|.+++-++++++|+..|++++.++|++ -++..++.+.++++++++++..|+.+...+|+.++++..
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 5555555555555555555555555555555555555555 235555555555555555555555555555555555555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCh-HHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHV-IEGRNGDAVSLLERYLKDWADD-SLHVKLAQV 494 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~ 494 (561)
.|.++..+ +++++|++.|.+++.+.|. ++..+...|.+.. ..+++..|+.+++++++.+|.. .++..+|.+
T Consensus 468 fAeiLtDq-qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 468 FAEILTDQ-QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQF 546 (606)
T ss_pred HHHHHhhH-HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 55555555 5555555555555555555 3333333222221 2255555555555555555554 455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 008550 495 FAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+.|+.++|+++|++++.+.
T Consensus 547 ~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 555555555555555555543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=3.5e-32 Score=279.34 Aligned_cols=404 Identities=13% Similarity=0.042 Sum_probs=339.3
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
.+....|++++|+..|.++...+| .+..++..+|.++...|++++|+..
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~-------------------------------~~a~~~~~lA~~~~~~g~~~~A~~~ 71 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQ-------------------------------LPARGYAAVAVAYRNLKQWQNSLTL 71 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455779999999999999987654 3345688999999999999999999
Q ss_pred HhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCC
Q 008550 131 MEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDH 209 (561)
Q Consensus 131 l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (561)
++++ ...|.++.++..++.++...|++++|+..++++++.+|++.. +..+
T Consensus 72 ~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l---------------------------- 122 (765)
T PRK10049 72 WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL---------------------------- 122 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH----------------------------
Confidence 9994 555889999999999999999999999999999999999888 7665
Q ss_pred CChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH-----
Q 008550 210 LDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT----- 284 (561)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 284 (561)
|.++...|++++|+..++++++..|+++.++..++.++...+..++|+..++++.. .|....
T Consensus 123 ------------a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~ 189 (765)
T PRK10049 123 ------------AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEAD 189 (765)
T ss_pred ------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999998776 554311
Q ss_pred HHHHHHHHHH-----hcCCH---hHHHHHHHHHHhcCCCCHHHH-------HH-HHHHHHhcCHhHHHHHHHHHHhccCC
Q 008550 285 YMDEYAMLLK-----VKCDY---SKLSKLVHDLLSIDPSRPEVF-------VA-LSVLWERKDERGALSYAEKSIRIDER 348 (561)
Q Consensus 285 ~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~-------~~-l~~~~~~~~~~~A~~~~~~~~~~~~~ 348 (561)
.......+.. ..+++ ++|+..++.+++..|.+|... .. ++.++..|++++|+..|+++++..|.
T Consensus 190 ~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~ 269 (765)
T PRK10049 190 AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQI 269 (765)
T ss_pred HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCC
Confidence 1122222222 22334 789999999997655544321 11 44454449999999999999988654
Q ss_pred Ch-hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC-------
Q 008550 349 HI-PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------- 415 (561)
Q Consensus 349 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------- 415 (561)
.+ .+...+|.++...|++++|+..|++++...|.. .....++.++...|++++|+..++++....|.
T Consensus 270 ~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 270 IPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 33 344446999999999999999999999887754 34667788889999999999999999998763
Q ss_pred --------CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-H
Q 008550 416 --------SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-S 486 (561)
Q Consensus 416 --------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 486 (561)
...++..++.++... |++++|+..+++++...|.++.++..+|.++...|++++|++.+++++...|++ .
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~-g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~ 428 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYS-NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN 428 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH
Confidence 135678899999998 999999999999999999999999999999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
+++.+|.++...|++++|...++++++..|+++.+...-...
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999776543333
No 18
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-31 Score=236.30 Aligned_cols=480 Identities=19% Similarity=0.187 Sum_probs=380.7
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
+..+.++..+.+.+|..|..+++.+..+. . .+...+++|.+++-.|+|.+|....+.-.--
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~--------dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---------- 78 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT-N--------DPADIYWLAQVLYLGRQYERAAHLITTYKLE---------- 78 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc-C--------ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh----------
Confidence 45566778889999999999999998874 1 2235799999999999999998877654211
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-------CCccc----------------
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-------PSKAR---------------- 139 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-------~~~~~---------------- 139 (561)
..+...++..+.|+.+..++++|..++... ...+.
T Consensus 79 ----------------------~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~ 136 (611)
T KOG1173|consen 79 ----------------------KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLM 136 (611)
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccc
Confidence 133457889999999999999999998821 11111
Q ss_pred ---chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcc-cHhHHhhccccccCCCCCCCCChhhH
Q 008550 140 ---NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPK-DIISLFAQTPNRSGRAPFDHLDSSRW 215 (561)
Q Consensus 140 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (561)
.....+..|.+|....+.++|...|.+++..++.+.++...+........ +....+..+.-.. ........
T Consensus 137 ~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~-----~~~ed~e~ 211 (611)
T KOG1173|consen 137 INLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAM-----LTKEDVER 211 (611)
T ss_pred ccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHh-----hhhhHHHH
Confidence 12245678999999999999999999999999999999988865543322 1111111110000 00000000
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFA-ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
+..+...... ...-+.+...-. ..+..-.+++++....+..++..+++.+..+.++..++.+|.+...+....-++.
T Consensus 212 l~~lyel~~~--k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~ 289 (611)
T KOG1173|consen 212 LEILYELKLC--KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLY 289 (611)
T ss_pred HHHHHHhhhh--hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHH
Confidence 0000000000 000000000000 1112223568889999999999999999999999999999999888766666999
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
..|+..+-..+-.++++.+|+.+..|+..|..|.. |++.+|.++|.++..++|....+|...|..+...|..++|+.+|
T Consensus 290 el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 290 ELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh----C
Q 008550 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL----E 448 (561)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~ 448 (561)
..|-++.|.. .....+|.-|...++++-|.++|.+++.+.|.+|-++..+|.+.+.. +.+.+|..+|++++.. .
T Consensus 370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHhhhcc
Confidence 9999998886 45778899999999999999999999999999999999999999988 9999999999999843 2
Q ss_pred CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 449 PG---YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 449 p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
+. ....+.++|.++.+++.+++|+..+++++...|.+ .++..+|.+|..+|+++.|+++|.+++-++|+|..+...
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 22 23467899999999999999999999999999988 899999999999999999999999999999999888887
Q ss_pred HHHHHHh
Q 008550 525 LERLEKQ 531 (561)
Q Consensus 525 l~~l~~~ 531 (561)
|....+.
T Consensus 529 L~~aie~ 535 (611)
T KOG1173|consen 529 LKLAIED 535 (611)
T ss_pred HHHHHHh
Confidence 7766543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=9e-31 Score=268.95 Aligned_cols=409 Identities=12% Similarity=0.018 Sum_probs=326.8
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccch
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS 84 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 84 (561)
-..++...-.|+++.|+.+....... .+..+.++..+|.++...|++++|+..|++++..+|.++
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------- 83 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------- 83 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Confidence 34566777889999999877766553 123345789999999999999999999999999987554
Q ss_pred hhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 85 RSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
.++..++.++...|++++|+..++++ ...|.++. +..+|.++...|++++|+..
T Consensus 84 ------------------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 84 ------------------------DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred ------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 57888999999999999999999995 55688889 99999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008550 164 YKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ 243 (561)
Q Consensus 164 ~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 243 (561)
|+++++..|++..++..+ +.++...+..++|+..++++..
T Consensus 139 l~~al~~~P~~~~~~~~l----------------------------------------a~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEY----------------------------------------VQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHhCCCCHHHHHHH----------------------------------------HHHHHHCCChHHHHHHHHhCCC
Confidence 999999999999988776 5566667778888887776654
Q ss_pred hCCCCH-----HHHHHHHHHHH-----HhCCH---HHHHHHHHHHHhhCCCChHH-------HHHHHHHHHhcCCHhHHH
Q 008550 244 RFPNNI-----HILLEMAKVDA-----IIGKN---DEAILNFEKVRSIDPYIMTY-------MDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 244 ~~~~~~-----~~~~~la~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~ 303 (561)
.|+.. .....+..+.. ..+++ ++|+..++.+++..|.++.. .......+...|++++|+
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~ 257 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI 257 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44321 11122222222 22334 77888888888764444322 121122346778999999
Q ss_pred HHHHHHHhcCCCCH-HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 304 KLVHDLLSIDPSRP-EVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
..|+++++..|..| .+...++.++.. |++++|+..|++++..+|.+ ......++.++...|++++|+..++++.
T Consensus 258 ~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 258 SEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999888765433 234446778888 99999999999988887765 2456667778889999999999999988
Q ss_pred HhCCC-------------h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 378 ELRPD-------------L---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 378 ~~~~~-------------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
...|. + .++..++.++...|++++|+..+++++...|.++.++..+|.++... |++++|+..+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~-g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR-GWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 87662 1 34678899999999999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVF 495 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~ 495 (561)
++++..+|+++.+++.+|.++...|++++|...++++++..|++..-..+...+
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985544554444
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-30 Score=246.09 Aligned_cols=521 Identities=13% Similarity=0.076 Sum_probs=409.3
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhc-----------hhHHHHHHHHHHHH
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRD-----------REYRRAIHTYKQAL 70 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al 70 (561)
+.|+..+..++.+|..++.+.+++..+.-+.............++..+|.-+... ..+..|..+|..+-
T Consensus 42 e~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ 121 (1018)
T KOG2002|consen 42 EAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLAD 121 (1018)
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHH
Confidence 5678899999999999999998888774433333344555556666666555332 34678888898888
Q ss_pred hhcccCccccccchhhhcccCCC--CCCccccc-ccC--CChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcc-cchhH
Q 008550 71 QYYKIVPKQNSTSSRSSLSTSNR--SSSPNSFN-VSA--INENEVKYKIASCHFALGETKAAIVEMEGI-PSKA-RNLQM 143 (561)
Q Consensus 71 ~~~p~~~~~~~~~~~~~~~~~~~--~~a~~~~~-~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~-~~~~~ 143 (561)
.++-..+......+...+..|.. +.+...+. +.. ++..-.++..|.+.+..|+|..|+.+|+.+ ...| .-++.
T Consensus 122 ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 122 KIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred HhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 88765555555555555555544 34444442 222 334566777788888999999999999983 3333 44677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHh---HHhhccccccCCCCCCCCChhhHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDII---SLFAQTPNRSGRAPFDHLDSSRWLHRYV 220 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (561)
...+|.++.+.|+.+.|+..|+++++++|.+..+...|+.+.....+.+ .++..+.......+ ..| .....
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~---~nP---~~l~~ 275 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN---ENP---VALNH 275 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC---CCc---HHHHH
Confidence 8899999999999999999999999999999999999988765554442 23333322222222 122 23344
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhc
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVK 296 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 296 (561)
++.-++..|+|..+..+...++...... .+.++.+|++|..+|++++|..+|.++++.+|++ .-.++.+|+.+...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 5888999999999999999998865333 5669999999999999999999999999999998 67789999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|+++.|+.+|+++++..|++.++...+|.+|.. + ..+.|..+..+++...|.+..+|..++.++....-+. ++.
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHH
Confidence 999999999999999999999999999999987 4 6679999999999999999999999999987655444 488
Q ss_pred HHHHhHHh------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CCCC-----HHHHHHHHHHHhhhcCChH
Q 008550 372 AFRGAQEL------RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA-----MPQS-----AKALKLVGDVHASNASGRE 435 (561)
Q Consensus 372 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~-----~~~~~~l~~~~~~~~~~~~ 435 (561)
.|..++.. .+..+..+++|..++..|++.+|...|..+... +++. ....+++|.++... ++++
T Consensus 435 ~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l-~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL-HDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh-hhhh
Confidence 88888754 122356899999999999999999999999876 2221 23579999999998 9999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 436 KAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 436 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|.+.|..+++..|...+++..+|......++..+|...+..++..+..+ .++..+|.++.....+..|.+-|+..++.
T Consensus 514 ~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~ 593 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKK 593 (1018)
T ss_pred HHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhh
Confidence 99999999999999999999999988888899999999999999988766 89999999999999999999988877765
Q ss_pred CC--ccHHHHHHHHHHHH
Q 008550 515 NS--QNEAAKKGLERLEK 530 (561)
Q Consensus 515 ~p--~~~~~~~~l~~l~~ 530 (561)
-. .|+-+...|+.+..
T Consensus 594 ~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 594 TSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred hccCCchhHHHHhhHHHH
Confidence 32 35566666666543
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8.5e-32 Score=248.40 Aligned_cols=303 Identities=24% Similarity=0.330 Sum_probs=288.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+..+.....+-+..+|+..|.+.....++...++..+|+.|+.+++|++|..+|+.+.+..|-..+....+..+++...
T Consensus 322 ~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 322 GLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH
Confidence 34455566667778999999999777888889999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.-+--.+.+.++..+|+.|+.|..+|.+|.. ++++.|+++|+++++++|....+|..+|.-+....+++.|..+|+.+
T Consensus 402 ~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 402 DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 88888888899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
+..+|.+ .+|+.+|.+|.++++++.|.-.|+++++++|.+......+|.++.+. |+.++|+..|++|+.++|.++-..
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~-k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL-KRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh-hhhhHHHHHHHHHHhcCCCCchhH
Confidence 9999997 89999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
+..|.+++..+++++|+..+++..+..|+. .+++.+|.+|.+.|+.+.|+..|.-|.+++|.-..+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 999999999999999999999999999988 899999999999999999999999999999976653
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-30 Score=230.50 Aligned_cols=351 Identities=17% Similarity=0.161 Sum_probs=275.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHH
Q 008550 143 MSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEA 222 (561)
Q Consensus 143 ~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (561)
.+-..|.-+++.|+|++||.+|.+++..+|+.+..+..+ +
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNr----------------------------------------a 156 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNR----------------------------------------A 156 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhH----------------------------------------H
Confidence 344567777777788888888888887777765554444 6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------H--------
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV------------------R-------- 276 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~-------- 276 (561)
-||...|++++.++...++++.+|+...+++.++.++..+|++++|+....-. +
T Consensus 157 AcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 157 ACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777766543221 1
Q ss_pred ----h--hCCCChHHH-------------------------HHHHHH--HHhc---CCHhHHHHHHHHHHhcCC----CC
Q 008550 277 ----S--IDPYIMTYM-------------------------DEYAML--LKVK---CDYSKLSKLVHDLLSIDP----SR 316 (561)
Q Consensus 277 ----~--~~~~~~~~~-------------------------~~l~~~--~~~~---~~~~~A~~~~~~~~~~~~----~~ 316 (561)
+ ..|.-|.+. -.+... .... ..|..|...+.+...... .+
T Consensus 237 ~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n 316 (606)
T KOG0547|consen 237 KEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN 316 (606)
T ss_pred HHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc
Confidence 0 011111100 001111 1111 145566655555433211 11
Q ss_pred ---------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH
Q 008550 317 ---------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS 385 (561)
Q Consensus 317 ---------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 385 (561)
..++...|..+.. |++-.|...|+.++.++|.+...++.+|.+|...++.++-...|.++..++|.+ .+
T Consensus 317 ~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 317 EIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred ccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 4577888888888 999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|+..|++++-++++++|+..|++++.++|++...+..++.+.+++ ++++++...|+.+.+..|+.++++...|.++..+
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCC------h-H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCC
Q 008550 466 GRNGDAVSLLERYLKDWAD------D-S--LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~------~-~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 535 (561)
+++++|++.|++++++.|. + . ++-.+.... -.+++..|.+.+++|++++|....++..|+.+..+.+..
T Consensus 476 qqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 476 QQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999987 2 2 222222222 348999999999999999999999999999998877643
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.98 E-value=3.9e-27 Score=236.75 Aligned_cols=445 Identities=12% Similarity=-0.029 Sum_probs=353.3
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+..+...+..+.+.+++|+|+.|+..|+++++.+|.++. .+. .++.++.
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~------------------------------av~-dll~l~~ 79 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG------------------------------QVD-DWLQIAG 79 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh------------------------------hHH-HHHHHHH
Confidence 445668899999999999999999999999999886541 122 6778888
Q ss_pred hcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
..|+.++|+..+++.. ..+........+|.++...|++++|+..|+++++.+|+++.++..++.++...++..+++..+
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 8899999999999955 224445555556889999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
.+.....+. .... ...+.++...++..+|+..++++++.+|++..++..+..++...|-...|.+...+--..
T Consensus 160 ~~l~~~dp~------~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 160 TELAERDPT------VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHhcccCcc------hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 888766553 1111 233555555777777999999999999999999999999999999999998776653322
Q ss_pred CCCChHHHHHHHH--HHH---------hcCC---HhHHHHHHHHHHhcCCCCHH---H----HHHHHHHHHh-cCHhHHH
Q 008550 279 DPYIMTYMDEYAM--LLK---------VKCD---YSKLSKLVHDLLSIDPSRPE---V----FVALSVLWER-KDERGAL 336 (561)
Q Consensus 279 ~~~~~~~~~~l~~--~~~---------~~~~---~~~A~~~~~~~~~~~~~~~~---~----~~~l~~~~~~-~~~~~A~ 336 (561)
.......+..... -.. ..++ .+.|+.-++.++...+..|. . ..-.-.++.. +++.+++
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 1111111111111 111 1112 35577777777775444432 2 2222233344 9999999
Q ss_pred HHHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC------h-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 337 SYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD------L-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 337 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
..|+.+.... |-...+....|..|+..+++++|+.+|+.++...|. . .....|..++...+++++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999987655 334567788999999999999999999999886532 1 2357789999999999999999999
Q ss_pred HHHHCC---------------CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 409 AMKAMP---------------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 409 ~~~~~p---------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
.....| +.......++.++... |++.+|.+.+++.+...|.|+.++..+|.++...|.+.+|..
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~-gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL-NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 988554 2256677788888887 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHH
Q 008550 474 LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKK 523 (561)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 523 (561)
.++.+....|++ .+...+|.++..+|++.+|......++...|+++.+..
T Consensus 472 ~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 472 ELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999988 89999999999999999999999999999999997654
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-27 Score=210.16 Aligned_cols=476 Identities=13% Similarity=0.086 Sum_probs=322.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++..++.+-.+..+.+|.-..+.++.. ... +..-..-..+|+++|++.+|.+|+++|+.++..-|+..+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivkn----kmf--~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~---- 273 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKN----KMF--PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKD---- 273 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcc----ccc--CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchh----
Confidence 344444455555555555554444331 010 1111133556777777777777777777777766543211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
-...+...+|..+++.|+|+.|+..|+.+.....+..+-+.+..+++..|+-++-.+.
T Consensus 274 ----------------------~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 274 ----------------------MRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEA 331 (840)
T ss_pred ----------------------hHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHH
Confidence 1133455566777777777777777776544433444555666667777777777777
Q ss_pred HHHHHhcC--CCcHHH-------HHHHHHHcCCcc-----------cHhHHhhccccccCCCCCCCCChhhHHHHHHHHH
Q 008550 164 YKECLRHC--PFFIEA-------ITALAELGATPK-----------DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (561)
Q Consensus 164 ~~~~l~~~--p~~~~~-------~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (561)
|++++..- |+.... ...|..-.+... +.+++.-...+...
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia-------------------- 391 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA-------------------- 391 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--------------------
Confidence 77776431 110000 000000000000 00000000000000
Q ss_pred HHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhc--C
Q 008550 224 CCIASNDYKGGLELFAELLQRF---PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVK--C 297 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--~ 297 (561)
-.-.-+|.....++-+.++.. |-..+.-...+--+++.|+++.|+++++-.-+.+.... .+-.++..+++.+ .
T Consensus 392 -pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 392 -PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred -cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 000011111122222222211 11122334456678889999999998876655544332 3344555555553 4
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++..|..+...++..+..++.++.+.|.+... |++++|.+.|..++..+.....+++++|..+..+|+.++|+.+|-+.
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 78889999999999998899999999987777 99999999999999988888899999999999999999999999887
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..+--++ .+++.++.+|..+.+..+|++++.++..+-|++|.++..+|.+|-+. |+..+|..++-......|.+.+..
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhhhhcccccCcchHHH
Confidence 7765555 67889999999999999999999999999999999999999999987 999999999988888999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
-.+|..|....-+++|+.+|+++.-+.|+. ......+.|+.+.|+|.+|.+.|+..-+..|.+.+...-|.++...+|
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999988999999999998888877 566778889999999999999999999999999999888888876665
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=2e-25 Score=204.91 Aligned_cols=411 Identities=17% Similarity=0.134 Sum_probs=349.1
Q ss_pred HHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC-----CCcHHHHHHHHHHcCCcccH
Q 008550 118 HFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC-----PFFIEAITALAELGATPKDI 191 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~ 191 (561)
+.++.-|+.|...+++.... |.++.+|..-+.+-..+|+.+....++.+.+..- .-+.+.|..-+..+...+..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 34456678888888876444 7788888888888888888888777777776322 12334454444443333333
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILN 271 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 271 (561)
..+...+....+....+......|... +..+...+-++-|+.+|..+++.+|....+|...+..-...|..++-..+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~d---a~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDD---AQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhh---HHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 322222222222223333344455544 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 272 FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
+++++...|.....|.+++..+...|+...|..++..+++.+|++.++|+....+... ..++.|...|.++....|. .
T Consensus 573 lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-e 651 (913)
T KOG0495|consen 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-E 651 (913)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-c
Confidence 9999999999999999999999999999999999999999999999999999999888 9999999999999987765 7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
.+|+.-+.+...+++.++|+.+++.+++..|+. ..|..+|+++..+++.+.|...|...++..|+.+..|..++.+-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 888888999999999999999999999999998 5699999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------------------------
Q 008550 430 NASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD------------------------ 485 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------ 485 (561)
. |+...|...++++.-.+|.+...|......-.+.|+.+.|...+.++++..|++
T Consensus 732 ~-~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 732 D-GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred h-cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 8 999999999999999999999999999999999999999999999999877654
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 486 -------SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 486 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++...|..++...++++|.++|.++++.+|++.++|..+-+.+...|
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 234788999999999999999999999999999999998888877665
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.3e-28 Score=224.80 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 108 NEVKYKIASCHFA--LGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 108 ~~~~~~~a~~~~~--~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
.+++..+|..+.. +-+..+|+..|++++.. ++...++..+|+.|+.+++|++|..+|+.+-+..|...+....+
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy--- 393 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY--- 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH---
Confidence 3455555555543 44557788877776544 55556667778888888888888888888877777543332222
Q ss_pred cCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 008550 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (561)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 264 (561)
..++....+--+--.+.+.+++.+|+.|+.|..+|.||-.+++
T Consensus 394 -------------------------------------ST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 394 -------------------------------------STTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred -------------------------------------HHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhH
Confidence 2222333333333334455666777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHH
Q 008550 265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~ 343 (561)
++.|+++|+++++++|....++..+|.-+.....++.|..+|+.++..+|.+..+|+.+|.+|.+ ++++.|.-.|++|+
T Consensus 437 h~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred HHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777 77777777777777
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHH
Q 008550 344 RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKL 422 (561)
Q Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 422 (561)
.++|.+......+|.++.+.|+.++|+.+|++|+.++|.+.. .+..+.++...+++++|+..++++.+.-|++..+++.
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 777777777777777777777777777777777777776643 6666777777777777777777777777777777777
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYL 452 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 452 (561)
+|.+|.+. |+.+.|+..|.-|..++|.-.
T Consensus 597 lgki~k~~-~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 597 LGKIYKRL-GNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHH-ccchHHHHhhHHHhcCCCccc
Confidence 77777776 777777777777777766543
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-26 Score=201.97 Aligned_cols=363 Identities=17% Similarity=0.177 Sum_probs=285.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+++.|.++-+.|....|+..|..++...|-+ ..++..++.+... .
T Consensus 166 llYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~-------------------------------W~AWleL~~lit~---~ 211 (559)
T KOG1155|consen 166 LLYLYGVVLKELGLLSLAIDSFVEVVNRYPWF-------------------------------WSAWLELSELITD---I 211 (559)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhcCCcc-------------------------------hHHHHHHHHhhch---H
Confidence 56667777777777777777777777665421 1233333333211 1
Q ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRH-CPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
+.+......++.+ .+.-.-+.++.++....+.++++.-++..... .|.+.-.....
T Consensus 212 e~~~~l~~~l~~~-~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~---------------------- 268 (559)
T KOG1155|consen 212 EILSILVVGLPSD-MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQI---------------------- 268 (559)
T ss_pred HHHHHHHhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHH----------------------
Confidence 1111111111111 22333355666666666777777777766665 45443333222
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
|.+.+.+.++++|+..|+.+.+.+|-..+-.-....+++-.++-.+-.-.-+.+..++...+
T Consensus 269 ------------------A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 269 ------------------AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred ------------------HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 78888999999999999999999997777777777777777666666666677788888889
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+....+|+.|...++.++|+.+|+++++++|....+|..+|.=|.. ++...|+..|+++++++|.+..+|+.+|.+|.-
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 363 MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
++.+.=|+-+|+++....|.+ +.|..+|.||.+.++.++|+++|.+++.....+..++..+|.+|.+. ++..+|..+|
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l-~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL-KDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 999999999999999999988 67999999999999999999999999999888899999999999998 9999999999
Q ss_pred HHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 442 ESALR-------LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 442 ~~a~~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
++.++ ..|+...+...|+.-+.+.+++++|..+...++.-.+
T Consensus 490 ek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 490 EKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 99987 3455566777899999999999999988888776533
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=4.9e-25 Score=226.30 Aligned_cols=478 Identities=13% Similarity=0.029 Sum_probs=373.3
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
+...+..+...|++..|..+...+....+.. ....++..+..++.+.++++.|...+..+....
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~------~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---------- 153 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFT------LPASTYDALVEACIALKSIRCVKAVYWHVESSG---------- 153 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------
Confidence 3455677788888888888777665432111 122356666677778888888888888877652
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
..++..++..+..+|.+.|++++|..+|+.++. .+...|..+...|.+.|++++|+..
T Consensus 154 --------------------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~l 211 (697)
T PLN03081 154 --------------------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFAL 211 (697)
T ss_pred --------------------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHH
Confidence 113355777888999999999999999999864 4667899999999999999999999
Q ss_pred HHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 164 YKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 164 ~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
|+++.+..+ .+...+..+...+...+................. ..+... .-.....|.+.|++++|..+|+++.
T Consensus 212 f~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~--~~d~~~---~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV--VGDTFV---SCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC--Ccccee---HHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 999987654 2334445555555555544433322111111000 011111 1223778889999999999999873
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHH
Q 008550 243 QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVF 320 (561)
Q Consensus 243 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 320 (561)
+.+..+|..+...|.+.|++++|+..|++..+.. ..+...+..+...+...|++++|.+++..+++.. +.+..++
T Consensus 287 ---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 287 ---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 4578899999999999999999999999987653 2245678889999999999999999999998875 5567788
Q ss_pred HHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcC
Q 008550 321 VALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFS 397 (561)
Q Consensus 321 ~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 397 (561)
..+...|.+ |++++|...|+++.+ .+..+|..+...|.+.|+.++|+..|+++.+. .|+..++..+...+...|
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 999999999 999999999998754 35778999999999999999999999998875 577788999999999999
Q ss_pred CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 008550 398 KVKEALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 398 ~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 475 (561)
..++|.++|+.+.+..+ .+...+..+...+.+. |++++|.+.++++ ...| +..+|..+...+...|+.+.|...+
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~-G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE-GLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc-CCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999987533 2456788899999998 9999999998864 2333 4567899999999999999999999
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHH
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--------------------------NSQNEAAKKGLERL 528 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~l 528 (561)
+++++..|++ ..|..++.+|...|++++|.+.++...+. .|....++..+..+
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 9999999976 78899999999999999999999987654 24445666677777
Q ss_pred HHhcc
Q 008550 529 EKQMK 533 (561)
Q Consensus 529 ~~~~~ 533 (561)
...+.
T Consensus 598 ~~~~~ 602 (697)
T PLN03081 598 MKEIS 602 (697)
T ss_pred HHHHH
Confidence 66554
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=3.7e-26 Score=220.08 Aligned_cols=300 Identities=17% Similarity=0.148 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (561)
..|..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ...+..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 446668899999999999999999999999999999999999999999999999999998854332 2567889999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh-----HHHHHHHHHHhcCCh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP-----GYIMKGNLLLSMKRP 366 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 366 (561)
+...|++++|...|+++++..|.+..++..++.++.. |++++|+..++++++..|.+.. .+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999 9999999999999998876532 456789999999999
Q ss_pred hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
++|+..|+++++..|+. .++..+|.++...|++++|+..+++++...|.+ ..++..++.++... |++++|+..++++
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999999998887 578899999999999999999999999998876 45678889999998 9999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH---cCCHHHHHHHHHHHH----hcCCc
Q 008550 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAA---TNMLQEALSHYEAAL----RINSQ 517 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al----~~~p~ 517 (561)
++..|+... ...++.++...|++++|+..++++++..|+...+..+...+.. .|+..+|+..+++.+ ..+|+
T Consensus 276 ~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999997744 4889999999999999999999999999988555444444433 457888887777665 44565
Q ss_pred c
Q 008550 518 N 518 (561)
Q Consensus 518 ~ 518 (561)
+
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 3
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.96 E-value=6.1e-26 Score=218.57 Aligned_cols=299 Identities=18% Similarity=0.201 Sum_probs=236.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
.....+.+|..+...|++++|+..|+++++.+|++..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------- 75 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLAL-------------------------------------- 75 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHH--------------------------------------
Confidence 344566678888888888888888888888888877666655
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++.+|.+..++..++.++..
T Consensus 76 --a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 76 --GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred --HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 777778888888888888877643322 25677788888888888888888888888888888888888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPE-----VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
.|++++|+..++++++..|.+.. .+..+|.++.. |++++|+..++++++..|.+..++..+|.++...|++++|
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 233 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAA 233 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887766532 45567777777 8889999999998888888888888889999999999999
Q ss_pred HHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 370 VIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 370 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+..+++++...|.+ .++..++.+|...|++++|+..++++++..|+.... ..++.++... |++++|+..++++++.
T Consensus 234 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~-g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 234 IEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQ-EGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 99999988887775 347788888889999999999999988888876544 7888888887 8999999999999988
Q ss_pred CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHh
Q 008550 448 EPGYLGAALALAELHVI--EGRNGDAVSLLERYLK 480 (561)
Q Consensus 448 ~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~ 480 (561)
.|++......++..... .|+..+|+..+++.++
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88876555444433322 4588888888887765
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.3e-26 Score=203.54 Aligned_cols=431 Identities=14% Similarity=0.091 Sum_probs=309.7
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHH
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETK 125 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 125 (561)
.-..|+..|..|+|+.|+.+|.+++.++|.+- ..+.....+|..+|+|+
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh-------------------------------vlySnrsaa~a~~~~~~ 53 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH-------------------------------VLYSNRSAAYASLGSYE 53 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCcc-------------------------------chhcchHHHHHHHhhHH
Confidence 45689999999999999999999999987543 35666789999999999
Q ss_pred HHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCC
Q 008550 126 AAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGR 204 (561)
Q Consensus 126 ~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 204 (561)
+|++.-.+ +...|.-+..|..+|..+.-.|+|++|+..|.+.|+.+|++.....++++........
T Consensus 54 ~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~------------- 120 (539)
T KOG0548|consen 54 KALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA------------- 120 (539)
T ss_pred HHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh-------------
Confidence 99997777 6677999999999999999999999999999999999999999999998776111111
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH--HHHHHHH-----h
Q 008550 205 APFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAI--LNFEKVR-----S 277 (561)
Q Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~--~~~~~~~-----~ 277 (561)
......+..|...- +.-..+.-..+.+.....+.++.+|.+...+..--++....|.....- ....... .
T Consensus 121 -~~~~~~p~~~~~l~--~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~ 197 (539)
T KOG0548|consen 121 -DQLFTKPYFHEKLA--NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM 197 (539)
T ss_pred -hhhccCcHHHHHhh--cChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC
Confidence 00011222222211 111111111223333333444445544332221100000000000000 0000000 0
Q ss_pred hCCC---------------------ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHH
Q 008550 278 IDPY---------------------IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGA 335 (561)
Q Consensus 278 ~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A 335 (561)
..|. -......+|...+...++..|++.+..++.++ .+...+...+.++.. |.+.+.
T Consensus 198 ~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c 276 (539)
T KOG0548|consen 198 AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAEC 276 (539)
T ss_pred CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHh
Confidence 0110 01234567888888888888888888888888 777777777878777 888887
Q ss_pred HHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 336 LSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+.....+++...... .....+|..+...++++.|+.+|.+++..... ..+..+....++++.....
T Consensus 277 ~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-------~~~ls~lk~~Ek~~k~~e~ 349 (539)
T KOG0548|consen 277 IELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-------PDLLSKLKEAEKALKEAER 349 (539)
T ss_pred hcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-------HHHHHHHHHHHHHHHHHHH
Confidence 777777766543321 23344666777888888888888887765443 3444555667777777777
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
..-.+|.-.......|..++.. |+|..|+..|.+++..+|+++..+.+.|-||.++|.+..|++..+++++++|+. ..
T Consensus 350 ~a~~~pe~A~e~r~kGne~Fk~-gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 350 KAYINPEKAEEEREKGNEAFKK-GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred HHhhChhHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence 7777887777778889999998 999999999999999999999999999999999999999999999999999987 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|..-|.++..+.+|++|.+.|+++++.+|++.++...+.++...+
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998888764
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=8.8e-25 Score=219.90 Aligned_cols=386 Identities=11% Similarity=0.094 Sum_probs=292.2
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
..+...+..+....+.|+++.|+..|+++ ...|.++.....++.++...|+.++|+..+++++...|........+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal--- 108 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA--- 108 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH---
Confidence 34567788888888888888888888884 44466643434777777778888888888888883333333333222
Q ss_pred cCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 008550 185 GATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (561)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 264 (561)
|.++...|++++|+++|+++++.+|+++.++..++.++...++
T Consensus 109 -------------------------------------A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 109 -------------------------------------ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred -------------------------------------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 6677777888888888888888888888888777788888888
Q ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC------------
Q 008550 265 NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD------------ 331 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------------ 331 (561)
.++|+..++++...+|.+... ..++.++...++..+|+..++++++.+|++.+++..+..+... |-
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 888888888888887775544 5556666566677668888888888888877766555555433 31
Q ss_pred ------------------------------------HhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhH
Q 008550 332 ------------------------------------ERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 332 ------------------------------------~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~ 368 (561)
.+.|+.-++..+...|..| .+....-.++...|++.+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1234555555555333333 233445567788999999
Q ss_pred HHHHHHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHhhhcCChHHHHHH
Q 008550 369 AVIAFRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMP------QSAKALKLVGDVHASNASGREKAKKF 440 (561)
Q Consensus 369 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~~~~A~~~ 440 (561)
++..|+......... -+....|..|...+++++|+.+|+.++...| .+......+...+... +++++|..+
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~-e~~~~A~~~ 389 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES-EQLDKAYQF 389 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc-ccHHHHHHH
Confidence 999999987654332 3566789999999999999999999988653 2333346778888888 999999999
Q ss_pred HHHHHHhCC---------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHH
Q 008550 441 YESALRLEP---------------GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEA 504 (561)
Q Consensus 441 ~~~a~~~~p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A 504 (561)
+++..+..| +..++...++.++...|++.+|.+.+++.+...|.+ .++..+|.++...|.+.+|
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999988544 224567788999999999999999999999999988 8999999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 505 LSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 505 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
...++.+..++|++..+...++.....++
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 99999999999999999999988887765
No 33
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=1.3e-25 Score=190.67 Aligned_cols=317 Identities=17% Similarity=0.217 Sum_probs=279.5
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 213 SRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
......+..|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-.-|+..+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445566699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHH---H----------HH--HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPE---V----------FV--ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~----------~~--~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
+.++|.+++|..-|+.++..+|++.. + |. .....+.. |+...|+......+++.|.+...+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 99999999999999999999996522 1 11 11222333 899999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV------------ 423 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------ 423 (561)
+.||...|++..|+..++.+-++..++ +.++.++.+++..|+.+.++...+++++++|++...+-..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887 7799999999999999999999999999999885443211
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAA----LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAAT 498 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~ 498 (561)
+...... ++|.++++..++.++.+|..+.+. ..+..|+...|++.+|+.....++...|++ +++...+..|...
T Consensus 276 ~e~~ie~-~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 276 AEQAIEE-KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHhh-hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1222334 888999999999999999865543 456788899999999999999999999998 9999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 499 NMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
..|+.|+..|++|.+.+|+|..+...+.+..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999887665
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.96 E-value=8.1e-24 Score=194.52 Aligned_cols=464 Identities=15% Similarity=0.061 Sum_probs=385.8
Q ss_pred HhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc-----cccC---CChHHHHHHHHHHHHhcCC
Q 008550 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF-----NVSA---INENEVKYKIASCHFALGE 123 (561)
Q Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~---~~~~~~~~~~a~~~~~~~~ 123 (561)
++.+..-|+.|.+.+.++-+.-|+.+......++..-..|+..-..... ++.. .-+-+.++.-|..+-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 3455678999999999999999888877666655544444222111110 0000 0114566777777777777
Q ss_pred HHHHHHHHhcC----CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 124 TKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 124 ~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
.-.+..++..+ ....+....|..-+..+.+.+-++-|+.+|..+++.+|.....|...+..-...|..++....+.
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 66666666553 23345567888999999999999999999999999999999999988877666666665555555
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
+.....| .....|+.+ +......|+...|..++.++++.+|++.++|+.-..+.....+++.|...|.++....
T Consensus 575 kav~~~p---kae~lwlM~---ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 575 KAVEQCP---KAEILWLMY---AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHhCC---cchhHHHHH---HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 5554444 234455544 8888888999999999999999999999999999999999999999999999999977
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
|.. .+|+..+.+...+++.++|+.+++++++.+|+.+..|..+|+++.+ ++.+.|...|...++..|..+..|..++.
T Consensus 649 gTe-Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTE-RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred Ccc-hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 755 7889999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
+-...|..-.|...++++.-.+|++. .|.....+-.+.|+.+.|.....++++..|++...|..-..+.-.- ++-..+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~-~rkTks 806 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP-QRKTKS 806 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc-ccchHH
Confidence 99999999999999999999999984 5889999999999999999999999999999988887766665554 554444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 438 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
+. +++....++.++...|.++....++++|.++|.++++.+|+. ++|..+-..+...|.-++-.+.|.++..-.|
T Consensus 807 ~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 807 ID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 44 455567788999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred ccHHHHHHHHH
Q 008550 517 QNEAAKKGLER 527 (561)
Q Consensus 517 ~~~~~~~~l~~ 527 (561)
.+...|.....
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 99998887655
No 35
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.96 E-value=1.1e-24 Score=185.08 Aligned_cols=387 Identities=19% Similarity=0.186 Sum_probs=304.5
Q ss_pred CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHH
Q 008550 37 TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (561)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 116 (561)
...+..++-++.+|..++..|++.+|+..|..|++.+|++ ..+.|..|.
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~-------------------------------Y~aifrRaT 80 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN-------------------------------YQAIFRRAT 80 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh-------------------------------HHHHHHHHH
Confidence 3456778899999999999999999999999999998743 458999999
Q ss_pred HHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHH---HHHHHHHHcCCcccHh
Q 008550 117 CHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIE---AITALAELGATPKDII 192 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~~~ 192 (561)
+|+.+|+..-|+..|.++ ...|+...+....|.+++++|.+++|...|.++++.+|.+.. +...++.+
T Consensus 81 ~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------- 152 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------- 152 (504)
T ss_pred HHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH--------
Confidence 999999999999999995 556888889999999999999999999999999999996543 33333211
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
...| .+......++..|++..|+.....+++..|-++..+...+.||...|++..|+..+
T Consensus 153 -------------------~e~~-~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 153 -------------------QEHW-VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred -------------------HHHH-HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1111 22233666778899999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhH
Q 008550 273 EKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPG 352 (561)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 352 (561)
+.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-..-.+ .+..+.+..
T Consensus 213 k~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl---kKv~K~les-------------- 275 (504)
T KOG0624|consen 213 KQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL---KKVVKSLES-------------- 275 (504)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH---HHHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999886544221111 222222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVH 427 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 427 (561)
+......++|.+++...++.++.+|.. ..+..+..|+...|++.+|++.+.+++..+|++..++...+.+|
T Consensus 276 ----~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 276 ----AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred ----HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 223345678888999999999988884 23556788899999999999999999999999999999999999
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 507 (561)
.-. ..|+.|+..|+++.+.++++..+...+- .-+++.+.....+.|-.||.- +.-...+-.+.
T Consensus 352 l~d-E~YD~AI~dye~A~e~n~sn~~~reGle--------------~Akrlkkqs~kRDYYKILGVk--RnAsKqEI~KA 414 (504)
T KOG0624|consen 352 LGD-EMYDDAIHDYEKALELNESNTRAREGLE--------------RAKRLKKQSGKRDYYKILGVK--RNASKQEITKA 414 (504)
T ss_pred hhh-HHHHHHHHHHHHHHhcCcccHHHHHHHH--------------HHHHHHHHhccchHHHHhhhc--ccccHHHHHHH
Confidence 987 9999999999999999999876654332 222223322222344444432 22334455556
Q ss_pred HHH-HHhcCCccHH
Q 008550 508 YEA-ALRINSQNEA 520 (561)
Q Consensus 508 ~~~-al~~~p~~~~ 520 (561)
|++ |.+-.|+|..
T Consensus 415 YRKlAqkWHPDNFq 428 (504)
T KOG0624|consen 415 YRKLAQKWHPDNFQ 428 (504)
T ss_pred HHHHHHhcCCcccc
Confidence 655 4556787643
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.6e-24 Score=191.65 Aligned_cols=439 Identities=15% Similarity=0.145 Sum_probs=345.7
Q ss_pred HHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHH
Q 008550 49 LGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAI 128 (561)
Q Consensus 49 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 128 (561)
+-+-...+.+|.-|+-+-+++..+. .++.--+.+|+|+.-.|++..|.
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~--------------------------------~dp~d~~~~aq~l~~~~~y~ra~ 69 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT--------------------------------NDPADIYWLAQVLYLGRQYERAA 69 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc--------------------------------CChHHHHHHHHHHHhhhHHHHHH
Confidence 3346677889999998888887764 33345688999999999999999
Q ss_pred HHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR-HCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
..+..-.....+....++.+.++....++++|..++.+.-. .+|-....... +......+.. +
T Consensus 70 ~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~-~~~l~~n~~~----~----------- 133 (611)
T KOG1173|consen 70 HLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA-ANTLELNSAG----E----------- 133 (611)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh-hceeccCccc----c-----------
Confidence 99887655677888999999999999999999998885510 01110000000 0000000000 0
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----------------CHHHHHH
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-----------------KNDEAIL 270 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------------~~~~A~~ 270 (561)
+..........+++|.+|....+.++|...|.+++..++.+.++...+-...+-.- ...+-++
T Consensus 134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~ 213 (611)
T KOG1173|consen 134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLE 213 (611)
T ss_pred cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHH
Confidence 00011111234667999999999999999999999999888776665543332211 1111111
Q ss_pred HHHHHH----------hhCC--------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC
Q 008550 271 NFEKVR----------SIDP--------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (561)
Q Consensus 271 ~~~~~~----------~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (561)
.+-++. ...| .+++.....+..++..+++.+..++.+..++.+|-++.++.....++.. |+
T Consensus 214 ~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 214 ILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGK 293 (611)
T ss_pred HHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc
Confidence 111111 0112 3456778888999999999999999999999999987765543335555 99
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+-...-.+.+...|+.+-.|+..|..|...|++.+|..+|.++..++|.. ++|...|..+...|..++|+..|..+-
T Consensus 294 ~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAa 373 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAA 373 (611)
T ss_pred cchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999999999999998 889999999999999999999999999
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD----- 485 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----- 485 (561)
+..|........+|.-|... ++++.|.++|.+|+.+.|.+|-++..+|.+.+..+.+.+|..+|++++..-++.
T Consensus 374 rl~~G~hlP~LYlgmey~~t-~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 374 RLMPGCHLPSLYLGMEYMRT-NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred HhccCCcchHHHHHHHHHHh-ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999998 999999999999999999999999999999999999999999999998433221
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCC
Q 008550 486 ---SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVD 536 (561)
Q Consensus 486 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 536 (561)
..+.++|-++.+++.+++|+.+|++++.+.|.+..++..++.++..+|..+
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 568999999999999999999999999999999999999999999887443
No 37
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=8e-24 Score=222.75 Aligned_cols=442 Identities=10% Similarity=-0.012 Sum_probs=288.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
+|..+-..|.+.|++++|+..|.++..... .++...+..+...+...|+.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~------------------------------~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSV------------------------------DPDLMTITSVISACELLGDE 304 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCC------------------------------CCChhHHHHHHHHHHhcCCh
Confidence 566666667777777777777777765420 01112233333334444444
Q ss_pred HHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|.+++..+... ..+..++..+...|.+.|++++|..+|+++.. .+...|..+...+.+.++.++++..+....
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444444432211 22333444444444444444444444444321 122233334444444444444333333221
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.... .++...+... -..+...|+++.|.+++..+.+.. ..+..++..+...|.+.|++++|.+.|++..+ .
T Consensus 382 ~~g~--~Pd~~t~~~l---l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~ 453 (857)
T PLN03077 382 QDNV--SPDEITIASV---LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K 453 (857)
T ss_pred HhCC--CCCceeHHHH---HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C
Confidence 1100 0111111111 235556788888888888777753 33466777778888888888888888877543 3
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC-CChhHHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE-RHIPGYIMKGNL 359 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 359 (561)
+...|..+...+.+.|+.++|+..|+++....+.+...+..+-..+.. |+.+.+...+..+++... .+......+...
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 456677777888888888888888888776544455555555556666 888888888777776532 234455677788
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHhhhcCChHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA--MPQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
|.+.|+.++|...|+.. .|+..+|..+...|...|+.++|+.+|++..+. .| +...+..+-..+... |.+++|
T Consensus 534 y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~-g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRS-GMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhc-ChHHHH
Confidence 99999999999998886 566677999999999999999999999988774 35 444555555667776 999999
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 438 KKFYESALRLEP--GYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 438 ~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+|+.+.+..+ .+...+..+..++.+.|++++|.+.++++ ...|+..+|..+-..+...|+.+.+....+++++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999998875432 23467888999999999999999999885 456777888888888888899999999999999999
Q ss_pred CccHHHHHHHHHHHHhcc
Q 008550 516 SQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 516 p~~~~~~~~l~~l~~~~~ 533 (561)
|++...+..+..++...+
T Consensus 688 p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 688 PNSVGYYILLCNLYADAG 705 (857)
T ss_pred CCCcchHHHHHHHHHHCC
Confidence 999999998888887665
No 38
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=6.2e-22 Score=205.08 Aligned_cols=398 Identities=12% Similarity=0.034 Sum_probs=212.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+...-..+.+.|++++|+..|+++...+... .+...+..+...+.+.|..
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-----------------------------~~~v~~~~li~~~~~~g~~ 422 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-----------------------------MDKIYHAKFFKACKKQRAV 422 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-----------------------------chHHHHHHHHHHHHHCCCH
Confidence 44445556678999999999999987753110 1122333455667788999
Q ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
++|..+++.+.. .+...|..+-..+.+.|++++|..+|.++.+... .+...+..+...+.+.++...+...+.....
T Consensus 423 ~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~ 500 (1060)
T PLN03218 423 KEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN 500 (1060)
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 999999988765 4567788888888999999999999999987653 3455666665554444444444433333221
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI---- 278 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 278 (561)
... ..+...|.. ....+.+.|++++|+.+|.++.... ..+..+|..+...+.+.|++++|.+.|..+...
T Consensus 501 ~Gv--~PdvvTyna---LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 501 AGV--EANVHTFGA---LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred cCC--CCCHHHHHH---HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 110 011122211 1444445555555555555554321 122444555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc--cCCChhHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRI--DERHIPGYI 354 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~ 354 (561)
.|+ ...+..+...|.+.|++++|.++|+.+.+.. +.++..|..+...|.+ |++++|+.+|.++... .| +...+.
T Consensus 576 ~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~Tyn 653 (1060)
T PLN03218 576 DPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFS 653 (1060)
T ss_pred CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 222 2344444555555555555555555555443 2334445555555555 5555555555555443 22 233444
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhc
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNA 431 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 431 (561)
.+...+.+.|++++|..++..+.+. .|+..+|..+...|.+.|++++|.++|+++.... ..+...|..+...|.+.
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~- 732 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG- 732 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-
Confidence 5555555555555555555555443 2333445555555555555555555555543321 12344455555555554
Q ss_pred CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 432 SGREKAKKFYESALRLE-PGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
|++++|.+.|+++.... ..+...+..+...+.+.|++++|..++..+.+.
T Consensus 733 G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 55555555555544321 112334444445555555555555555555543
No 39
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=3.3e-23 Score=194.65 Aligned_cols=418 Identities=19% Similarity=0.123 Sum_probs=331.2
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
....+-.+.-.+...|+|..+.+.|++++... +...+.++.++.++...
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------------------------------~~~~e~w~~~als~saa 370 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------------------------------FGEHERWYQLALSYSAA 370 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------------------------------hhhHHHHHHHHHHHHHh
Confidence 34466677778888999999999999988752 35567899999999999
Q ss_pred CCHHHHHHHHhc-CCCc--ccchhHHHHHHHHH-HhcCChhhHHHHHHHHHhcCCCc-----HHHHHHHHHHcCCcccHh
Q 008550 122 GETKAAIVEMEG-IPSK--ARNLQMSLLMAKLY-RNSRHNRGAVACYKECLRHCPFF-----IEAITALAELGATPKDII 192 (561)
Q Consensus 122 ~~~~~A~~~l~~-~~~~--~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~ 192 (561)
|.-..|+.+++. +... |.++..++..+.++ .+.|..++++.+-++++...-.. +..+..++-.+...-
T Consensus 371 g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--- 447 (799)
T KOG4162|consen 371 GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--- 447 (799)
T ss_pred ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh---
Confidence 999999999988 4544 77777777666655 46889999999999998744211 111222211111000
Q ss_pred HHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 193 SLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
..+..+. .+.....++++.++++++.+|+|+.+.+.++.-|...++.+.|+.+.
T Consensus 448 -----------------~~a~~~s---------eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~ 501 (799)
T KOG4162|consen 448 -----------------RQANLKS---------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYA 501 (799)
T ss_pred -----------------hcCCChH---------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHH
Confidence 0000000 11223568899999999999999999999999999999999999999
Q ss_pred HHHHhh-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 273 EKVRSI-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 273 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
++++++ ..+++.+|..++.++...+++.+|+.+...++...|++.........+-.. ++.++|+..+...+.+-....
T Consensus 502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~ 581 (799)
T KOG4162|consen 502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY 581 (799)
T ss_pred HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh
Confidence 999999 556689999999999999999999999999999999987776666666666 999999998887776543222
Q ss_pred h---------HHHHHHHHHHhcCChhHHHHHHHHhHHh--------C-----C--------Ch------HHHHHHHHHHH
Q 008550 351 P---------GYIMKGNLLLSMKRPEAAVIAFRGAQEL--------R-----P--------DL------RSYQGLVHSYL 394 (561)
Q Consensus 351 ~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~-----~--------~~------~~~~~l~~~~~ 394 (561)
. .....+......++..+|++..+.+... . | +. ..|...+..+.
T Consensus 582 ~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~ 661 (799)
T KOG4162|consen 582 GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL 661 (799)
T ss_pred hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH
Confidence 1 2222333334444555565555544322 0 1 11 24678899999
Q ss_pred hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH-
Q 008550 395 QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS- 473 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~- 473 (561)
..+..++|..++.++-.++|..+..|+..|.++... |.+.+|...|..++.++|+++.....+|.++.+.|+..-|..
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~ 740 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVK-GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKR 740 (799)
T ss_pred hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHH
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999988888
Q ss_pred -HHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 474 -LLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 474 -~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
.+..+++.+|.+ ++|+.+|.++.+.|+.++|.++|..++++.+.+|.
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999987 99999999999999999999999999999988774
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=2e-23 Score=199.43 Aligned_cols=365 Identities=17% Similarity=0.153 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcC
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGA 186 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 186 (561)
....+..|......|++++|..++.. |...|.++.+|+.||.+|.++|+.+++..++-.+-.++|.+.+.|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l----- 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL----- 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH-----
Confidence 56778888888999999999999998 567799999999999999999999999999999999999999999887
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND 266 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 266 (561)
+....++|++.+|+-+|.++++.+|.+....+..+.+|.+.|+..
T Consensus 214 -----------------------------------adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~ 258 (895)
T KOG2076|consen 214 -----------------------------------ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK 258 (895)
T ss_pred -----------------------------------HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence 677778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCh-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh-cCHhHHHHH
Q 008550 267 EAILNFEKVRSIDPYIM-----TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSY 338 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~ 338 (561)
.|+..|.+++...|... ..-...+..+...++-+.|++.++.++.... ...+.+..++.++.. ..++.|...
T Consensus 259 ~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 259 RAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 99999999999999321 2234457778888888999999999988322 234456677777777 889988888
Q ss_pred HHHHHhc--cCC--------------------------ChhH-HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh--HHHH
Q 008550 339 AEKSIRI--DER--------------------------HIPG-YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--RSYQ 387 (561)
Q Consensus 339 ~~~~~~~--~~~--------------------------~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~ 387 (561)
....... .++ +..+ ...++.+..+.++..+++..+..--...|.. ..+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 7765541 000 1122 4445555556666666666555444434555 4589
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 388 GLVHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
.++.++...|++.+|+.++..+....+. +..+|+.+|.|+... |.+++|+.+|++++...|++.++...|+.++.++|
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 9999999999999999999998876653 477999999999999 99999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 467 RNGDAVSLLERYLKDWA----------DDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.++|.+.++....-++ ...+...+..++...|+.++=+..-...+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999998663331 115778899999999999886555444443
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.6e-24 Score=187.14 Aligned_cols=445 Identities=13% Similarity=0.135 Sum_probs=343.2
Q ss_pred HHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhc
Q 008550 9 TALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSL 88 (561)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 88 (561)
..++++..|+.|+......+...+ ......++..+..+|-.+.+.|+|+.|+..|...++..|...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvp---sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~----------- 310 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVP---SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI----------- 310 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhcc---ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-----------
Confidence 445678899999999998888754 444567888999999999999999999999999999876443
Q ss_pred ccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcc------------cchh-HHHHH---HHHHH
Q 008550 89 STSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKA------------RNLQ-MSLLM---AKLYR 152 (561)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~------------~~~~-~~~~l---~~~~~ 152 (561)
.-+.+..|++..|+-++-.+.|.++...| +++. .+..- ...+.
T Consensus 311 ---------------------a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 311 ---------------------AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ---------------------hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 56778899999999988888887743221 1211 11111 11111
Q ss_pred --hcCChhhHHHHHHHHHhc-----CCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHH
Q 008550 153 --NSRHNRGAVACYKECLRH-----CPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225 (561)
Q Consensus 153 --~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (561)
...+...|......+.++ .|+.......-.+.. ++-.. .+.....-..++..+
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l-------k~s~~-------------~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL-------KASQH-------------AELAIDLEINKAGEL 429 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH-------HHhhh-------------hhhhhhhhhhHHHHH
Confidence 112223343333333322 232211110000000 00000 000111123448889
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAII--GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
+++|+++.|++++.-.-+.+... ..+-..+..+++.+ .++..|..+...++.++..++.++.+.|.+.+..|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 99999999999988766554432 33445566666664 3788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCC
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRP 381 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 381 (561)
...|++++..+....++++++|..+.. |+.++|+.+|-+.-.+--++..+++.++.+|..+.+..+|++++.++..+-|
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC
Confidence 999999999888889999999999999 9999999999999888888999999999999999999999999999999999
Q ss_pred ChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 382 DLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 382 ~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
++++ +..++.+|-+.|+..+|.+++-.....+|.+.+..-++|..|... .-+++|+.+|+++.-+.|+...-...++.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 9865 889999999999999999999999999999999999999999997 88899999999999999998888888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
|+.+.|+|.+|...|+..-+..|.+ +.+..+.++.-.+|- .+|.++-.+
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 9999999999999999999999988 666667777766663 334444333
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=3.8e-23 Score=197.59 Aligned_cols=456 Identities=15% Similarity=0.090 Sum_probs=313.2
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
.+.....++-.|+.+|-.|++++|...+.++++++|.++ .+++.+|.+|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~-------------------------------~ay~tL~~Iy 183 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP-------------------------------IAYYTLGEIY 183 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch-------------------------------hhHHHHHHHH
Confidence 345577888899999999999999999999999998766 4678888888
Q ss_pred HhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhc
Q 008550 119 FALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
-++|+.+++....-. ....|.+.+.|..++....++|++.+|+-+|.++++.+|.++......+.++.+.|+...+...
T Consensus 184 EqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 184 EQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 888888888774443 4455777788888888888888888888888888888888888888888888888887777777
Q ss_pred cccccCCCCCCCCChhhHHH-HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 198 TPNRSGRAPFDHLDSSRWLH-RYVEAQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
..+.....|+. +-..+.. .+..+..+...++-+.|++.+..++.. +....+.+..++.+++....++.|......
T Consensus 264 f~~l~~~~p~~--d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 264 FLQLLQLDPPV--DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHhhCCch--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 76666555511 1111111 122244455555556666666666552 112223344445555555555555444333
Q ss_pred HHh---------------------------------------------------------------hCC-CChHHHHHHH
Q 008550 275 VRS---------------------------------------------------------------IDP-YIMTYMDEYA 290 (561)
Q Consensus 275 ~~~---------------------------------------------------------------~~~-~~~~~~~~l~ 290 (561)
... ..| +.++.+..++
T Consensus 342 ~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a 421 (895)
T KOG2076|consen 342 DRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLA 421 (895)
T ss_pred HhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHH
Confidence 222 112 2246678888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSR-PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (561)
..+...|++.+|+.++..+....+.. ..+|+.+|.||.. |.++.|+.+|++++...|.+.++.+.++.++.++|+.++
T Consensus 422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHH
Confidence 89999999999999999888766544 5689999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhCCCh----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------HCCCC---------------
Q 008550 369 AVIAFRGAQELRPDL----------RSYQGLVHSYLQFSKVKEALYAAREAMK-------AMPQS--------------- 416 (561)
Q Consensus 369 A~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~p~~--------------- 416 (561)
|.+.+.....-++.. ........++...|+.++=+......+. ..|.+
T Consensus 502 alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~ 581 (895)
T KOG2076|consen 502 ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKR 581 (895)
T ss_pred HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccc
Confidence 999998876333221 1345667777788877764443333221 11211
Q ss_pred --------------------------------------------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC--C
Q 008550 417 --------------------------------------------AKALKLVGDVHASNASGREKAKKFYESALRLEP--G 450 (561)
Q Consensus 417 --------------------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p--~ 450 (561)
...+..+..++.+. +++++|......++...- .
T Consensus 582 ~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~-~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 582 YSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKL-QRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred cchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhhhhhc
Confidence 23344555666776 888888888888776421 1
Q ss_pred CH----HHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC----------------------------------h--
Q 008550 451 YL----GAALALAELHVIEGRNGDAVSLLERYLKD-----WAD----------------------------------D-- 485 (561)
Q Consensus 451 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~----------------------------------~-- 485 (561)
++ ...+....+-...+++..|..+++.++.. .+. +
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 12 22333444556677888888777776655 221 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
......|..+...+.+.-|+..|-++...+|++|..-..++..
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 1123345556667889999999999999999998776555543
No 43
>PLN03077 Protein ECB2; Provisional
Probab=99.94 E-value=1.3e-22 Score=213.63 Aligned_cols=472 Identities=12% Similarity=-0.002 Sum_probs=370.5
Q ss_pred HHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhh
Q 008550 7 QITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRS 86 (561)
Q Consensus 7 ~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 86 (561)
.+..+.+.|++++|..+.......... ....++..+-..+...|+.+.|.+.+..+.+..
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~-------Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------------- 318 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVD-------PDLMTITSVISACELLGDERLGREMHGYVVKTG------------- 318 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------------
Confidence 356667778888888777776553211 112356666677888999999999999988763
Q ss_pred hcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHH
Q 008550 87 SLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (561)
Q Consensus 87 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 166 (561)
..++..++..+...|.+.|++++|..+|+.+.. .+...|..+...|.+.|++++|+..|++
T Consensus 319 -----------------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 319 -----------------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred -----------------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 123456788899999999999999999999863 4567899999999999999999999999
Q ss_pred HHhcC--CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 167 CLRHC--PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 167 ~l~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
+.+.. |+.. .+..+...+...++.+.+.+........... .+.. ..-.....|.+.|++++|.++|+++.+
T Consensus 380 M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~--~~~~---~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 380 MEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERKGLI--SYVV---VANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCC--cchH---HHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 87654 6544 3444445556666666555444333222111 1111 222336788899999999999998754
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCHHHHHHH
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-SRPEVFVAL 323 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 323 (561)
.+...|..+...|...|++++|+..|+++....+.+...+..+...+...|..+.+..++..+++... .+..+...+
T Consensus 453 --~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 --KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred --CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 35678899999999999999999999999876555666777777889999999999999998887543 334566778
Q ss_pred HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHH
Q 008550 324 SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVK 400 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 400 (561)
...|.+ |+.++|...|+.. +.+..+|..+...|...|+.++|+..|++..+. .|+..++..+...+.+.|.++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 888999 9999999999886 567889999999999999999999999998875 577777888889999999999
Q ss_pred HHHHHHHHHHHHCC--CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 401 EALYAAREAMKAMP--QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 401 ~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+|..+|+.+.+..+ .+...+..+..++.+. |++++|.+.++++ ...|+ +.+|..+...+...|+.+.+....+++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRA-GKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC-CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999985432 2567889999999998 9999999999886 34554 677888888888899999999999999
Q ss_pred HhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCccHHHHHHHHHHHHh
Q 008550 479 LKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--------------------------NSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 479 ~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~l~~~ 531 (561)
+++.|++ ..+..++.+|...|++++|.+..+...+. .|...+++..|..+...
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 9999987 78889999999999999999999877543 34456677777777766
Q ss_pred cc
Q 008550 532 MK 533 (561)
Q Consensus 532 ~~ 533 (561)
++
T Consensus 764 ~~ 765 (857)
T PLN03077 764 MK 765 (857)
T ss_pred HH
Confidence 54
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=4.6e-23 Score=211.79 Aligned_cols=445 Identities=11% Similarity=0.008 Sum_probs=358.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+......+.+.|++++|+..|+.+....|.. .+...+..+..++.+.+++
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~-----------------------------~~~~t~~~ll~a~~~~~~~ 139 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFT-----------------------------LPASTYDALVEACIALKSI 139 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-----------------------------CCHHHHHHHHHHHHhCCCH
Confidence 56667778889999999999999987643211 2234667778888899999
Q ss_pred HHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|..++..+... ..+...+..+...|.+.|++++|...|+++.. | +...|..+...+...++..+++..+.+..
T Consensus 140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999988876432 34677888899999999999999999999864 3 44567777777778888887777766654
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY 281 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 281 (561)
.... ..+...+. .....+...|....+.+++..+.+.. ..+..++..+...|.+.|++++|...|+.. .+.
T Consensus 217 ~~g~--~p~~~t~~---~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~ 288 (697)
T PLN03081 217 EDGS--DAEPRTFV---VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEK 288 (697)
T ss_pred HhCC--CCChhhHH---HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCC
Confidence 3221 11222222 22455667899999999988887753 345778888999999999999999999876 345
Q ss_pred ChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-CCChhHHHHHHH
Q 008550 282 IMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGN 358 (561)
Q Consensus 282 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 358 (561)
+...|..+...|.+.|++++|..+|+++.... ..+...+..+...+.. |++++|...+..+++.. +.+..++..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 77889999999999999999999999997643 2355678888888888 99999999999999876 556788999999
Q ss_pred HHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHH
Q 008550 359 LLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKA 437 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A 437 (561)
.|.+.|++++|...|++..+ |+..+|..+...|.+.|+.++|++.|+++.... ..+...+..+...+... |..++|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~~~~a 445 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS-GLSEQG 445 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-CcHHHH
Confidence 99999999999999998753 555779999999999999999999999988743 22566777778888887 999999
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 438 KKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 438 ~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..+|+.+.+..+- +...+..+..++.+.|++++|.+.++++ ...|+..+|..+...+...|+.+.|...+++.+++.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 9999999864322 3457888999999999999999999874 345667889999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhcc
Q 008550 516 SQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 516 p~~~~~~~~l~~l~~~~~ 533 (561)
|++...+..+..++...|
T Consensus 525 p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred CCCCcchHHHHHHHHhCC
Confidence 998888888877766554
No 45
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=3.7e-21 Score=199.39 Aligned_cols=461 Identities=11% Similarity=0.037 Sum_probs=344.2
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.+.....+.+.|++..|..+.+.+.... ..++ ....+..+-..+.+.|..++|...|+.+.. |
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~g----vv~~--~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p--------- 435 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRG----LLDM--DKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P--------- 435 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCC----CCCc--hHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C---------
Confidence 3455677788899999998877765431 1111 112233444567788999999998877643 2
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAV 161 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 161 (561)
+...+..+-.++.+.|+++.|..+++.+... ..+...+..+...|.+.|+.++|.
T Consensus 436 -----------------------d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~ 492 (1060)
T PLN03218 436 -----------------------TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492 (1060)
T ss_pred -----------------------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHH
Confidence 1235666777788889999999998886543 456678888888899999999999
Q ss_pred HHHHHHHhcCC-CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008550 162 ACYKECLRHCP-FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAE 240 (561)
Q Consensus 162 ~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 240 (561)
.+|+++.+... .+...+..+...+.+.++.+.+...+........ .++...| ......+.+.|++++|.++|.+
T Consensus 493 ~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv--~PD~vTY---nsLI~a~~k~G~~deA~~lf~e 567 (1060)
T PLN03218 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVF---NALISACGQSGAVDRAFDVLAE 567 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHH---HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999887653 3677788888888888888877766554432211 1122233 3337778899999999999999
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-C
Q 008550 241 LLQR----FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSID-P 314 (561)
Q Consensus 241 ~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 314 (561)
+... .| +..++..+...|.+.|++++|.+.|+.+.+.+ +.+...|..+...|.+.|++++|..+|.++.... .
T Consensus 568 M~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 568 MKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 9763 34 46788889999999999999999999999876 4567889999999999999999999999998762 2
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHH
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRID-ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLV 390 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 390 (561)
.+...|..+...+.. |++++|..+++.+.+.. +.+...+..+...|.+.|++++|...|+.+... .|+...|..+.
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 245678888888888 99999999999999865 345778999999999999999999999998764 67778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCh
Q 008550 391 HSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG-YLGAALALAELHVIEGRN 468 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~g~~ 468 (561)
..|.+.|++++|+++|+++.... ..+...+..+...+... |++++|..++.++.+.... +...+..+..++. +++
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y 803 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRF 803 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHH
Confidence 99999999999999999987642 23567777777888887 9999999999999886422 2344444433322 356
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CccHHH
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN--SQNEAA 521 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 521 (561)
++|....+..+..++ +......+..+.|..+|++.++.. |+....
T Consensus 804 ~ka~~l~~~v~~f~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 804 EKACALGEPVVSFDS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHhhhhhhhhhhhc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 666666555443322 222223344577999999998864 654443
No 46
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8e-23 Score=184.75 Aligned_cols=425 Identities=19% Similarity=0.163 Sum_probs=257.4
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
...++....+..|+|++|+.+....+.+.+.+.. .+-....+|...|+|.+|++--.+.++++|+.|+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv--------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k---- 71 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV--------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK---- 71 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccc--------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh----
Confidence 4567888999999999999998888887544333 5666778899999999999999999999987774
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcC------
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSR------ 155 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~------ 155 (561)
.+..+|..+.-+|+|++|+..+.+ +...|.+......++.++....
T Consensus 72 ---------------------------gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~ 124 (539)
T KOG0548|consen 72 ---------------------------GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLF 124 (539)
T ss_pred ---------------------------HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhc
Confidence 688999999999999999999988 7777888888888877773220
Q ss_pred ---------------C---hhhHHHHHHHHHhcCCCcHHHH-------HHHHHH-cCCcccHhHHhhccccccCCCCC--
Q 008550 156 ---------------H---NRGAVACYKECLRHCPFFIEAI-------TALAEL-GATPKDIISLFAQTPNRSGRAPF-- 207 (561)
Q Consensus 156 ---------------~---~~~A~~~~~~~l~~~p~~~~~~-------~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 207 (561)
+ .+.+.....+.+...|.+...+ ..++.+ ..... ...............|.
T Consensus 125 ~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~-~~~~~~~~~~~~~~~p~~~ 203 (539)
T KOG0548|consen 125 TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDEL-LFYASGIEILASMAEPCKQ 203 (539)
T ss_pred cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccc-cccccccccCCCCCCcccc
Confidence 0 1122222222233333222111 111111 00000 00000000000000000
Q ss_pred ----CCC--Chh-------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 208 ----DHL--DSS-------RWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 208 ----~~~--~~~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
.+. +.. .....-..|...+...++..|++.+..++..+ .+...+...+-+|+..|.+.+++....+
T Consensus 204 ~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~ 282 (539)
T KOG0548|consen 204 EHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEK 282 (539)
T ss_pred cCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHH
Confidence 000 000 00112233666666677777777777777777 6666666677777777777777766666
Q ss_pred HHhhCCCCh-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 275 VRSIDPYIM-------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 275 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
+++...... .+...+|..+...++++.++.+|++++..... ..+... ...++++...+...-++
T Consensus 283 a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~ 354 (539)
T KOG0548|consen 283 AVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYIN 354 (539)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 665543321 12233444555566666666666665543322 233333 45555565555555556
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
|.-.......|..++..|+|..|+..|.+++..+|++ ..|.+.+.||.++|.+..|+...+.+++++|+....|...|.
T Consensus 355 pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 355 PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 6655555556666677777777777777776666666 346666777777777777777777777777766666666666
Q ss_pred HHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008550 426 VHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER 477 (561)
Q Consensus 426 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 477 (561)
++..+ .+|+.|.+.|.++++.+|++.++...+..|...+.......+..++
T Consensus 435 al~~m-k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 435 ALRAM-KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 66666 6677777777777777766666666666666554333333344444
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.93 E-value=2e-22 Score=192.71 Aligned_cols=295 Identities=14% Similarity=0.069 Sum_probs=252.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 297 (561)
...|......|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 45589999999999999999999999998888888889999999999999999999999999885 46666799999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH----HHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI----MKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~ 372 (561)
+++.|...++++.+..|+++.++..++.++.. |++++|.+.+.+..+..+.++..+. ....-....+..+++...
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999 9999999999999987655443331 222222344455555667
Q ss_pred HHHhHHhCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 373 FRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL--KLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 373 ~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+..+....|. ...+..++..+...|++++|.+.++++++..|++.... .......... ++.+.+++.+++++
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~-~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKP-EDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCC-CChHHHHHHHHHHH
Confidence 8888877773 36688999999999999999999999999999987532 2233333444 78899999999999
Q ss_pred HhCCCCH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 446 RLEPGYL--GAALALAELHVIEGRNGDAVSLLE--RYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 446 ~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+..|+++ .....+|+++.+.|++++|.++|+ .+++..|++..+..+|.++...|+.++|.++|++++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 889999999999999999999999 67888899977889999999999999999999998664
No 48
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-21 Score=170.19 Aligned_cols=373 Identities=13% Similarity=0.118 Sum_probs=249.6
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccc---cccCCChHHHHHHHHHHHHhcC
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSF---NVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
...++..+-+-++-.++...|...+...|--.....++....+ ...+.+.... ......+.-.....+...+..+
T Consensus 133 nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~ 210 (564)
T KOG1174|consen 133 NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNF 210 (564)
T ss_pred HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhc
Confidence 3445555555556667888888887776532222222221111 1111111111 2222233223333444444445
Q ss_pred CHHHHHHH--Hhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 123 ETKAAIVE--MEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 123 ~~~~A~~~--l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
+...|... +-. ...-|.+...+..+|.++...|++.+|+..|+++...+|......-..+-+....++....-...-
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~ 290 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMD 290 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHH
Confidence 55555443 333 333488899999999999999999999999999999999988887776666555555443322222
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....... .....|+ ..+...+..+++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.
T Consensus 291 ~Lf~~~~---~ta~~wf---V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 291 YLFAKVK---YTASHWF---VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHhhhh---cchhhhh---hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 2111110 1122333 337777777888888888888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH-HHHHh--cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS-VLWER--KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
|...+.+..+..+|...|++.+|....+.+++..|.+...+..+| .++.. .--++|.+++++++++.|....+...+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~ 444 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI 444 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH
Confidence 888888888888888888888888888888888888887777776 44333 455678888888888888887788888
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+.++...|.++.++..+++.+...|+...+..+|.++...+.+.+|+..|..++.++|++..+...+-.+
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 8888888888888888888887777777777788888888888888888888888888766655544433
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=1.9e-24 Score=196.70 Aligned_cols=258 Identities=24% Similarity=0.229 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-h-CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRS-I-DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (561)
.+|.++...|++++|++++.+.+. . .|+++..|..+|.+....++++.|+..+++++..++.++..+..++.++..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 557777777777777777754433 3 36666667777777777777777777777777776666666666666632377
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CCh-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+++|+.+++++.+..+ ++..+.....++...++++++...++++.... +.+ ..|..+|.++.+.|++++|+..+++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776665543 35555566666777777777777777765443 222 3466777777777777777777777
Q ss_pred HHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HH
Q 008550 409 AMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SL 487 (561)
Q Consensus 409 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 487 (561)
+++.+|+++.+...++.++... |+.+++...+.......|+++..+..+|.++...|++++|+.+++++++..|++ .+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~-~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDM-GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7777777777777777777776 777777777777666667777777777777777777777777777777777755 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+..+|.++...|+.++|..++++++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 77777777777777777777777654
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.92 E-value=1.7e-24 Score=197.05 Aligned_cols=257 Identities=23% Similarity=0.245 Sum_probs=121.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 222 AQCCIASNDYKGGLELFAELLQR--FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
|.+++..|++++|++++.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 89999999999999999776554 488999999999999999999999999999999999999888888888 799999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc--CCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
++|..++++..+..+ ++..+.....++.. ++++++...++++.... +.++..+..+|.++.+.|++++|+..|+++
T Consensus 94 ~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 94 EEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987664 56777777777888 99999999999977655 677889999999999999999999999999
Q ss_pred HHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 377 QELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 377 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
++.+|++ .+...++.++...|+++++...+.......|+++..+..+|.++... |++++|+.+|+++++.+|+++..+
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-cccccccccccccccccccccccc
Confidence 9999997 56889999999999999999999999988899999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..+|.++...|+.++|..++.+++..
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988653
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.91 E-value=1e-20 Score=179.86 Aligned_cols=293 Identities=12% Similarity=0.062 Sum_probs=243.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHHHhhCCCChHHH-HHHHHHHHh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEM-AKVDAIIGKNDEAILNFEKVRSIDPYIMTYM-DEYAMLLKV 295 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 295 (561)
.+..|......|+++.|.+.+.+..+..+ ++.+++.+ +.+....|+++.|..++.++.+.+|++..+. ...+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 35668888899999999988887655433 35555555 6666999999999999999999999985443 455899999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHH--------HHHHHHHhcCCh
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYI--------MKGNLLLSMKRP 366 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~ 366 (561)
.|++++|...++++.+..|+++.++..++.++.. |++++|+..+.+..+..+.++.... .+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999 9999999999999987766543222 222222233344
Q ss_pred hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+.....++......|++ .....++..+...|+.++|...++++++. |.++......+.+ .. ++.+++++..++.+
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~-~~~~~al~~~e~~l 321 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KT-NNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cC-CChHHHHHHHHHHH
Confidence 45555555555555555 56889999999999999999999999994 5566666666655 33 88999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
+..|+++..+..+|.++...|++++|.+.|+++++..|++..+..++.++...|+.++|..+|++++.+.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888999999999999999999999998764
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-18 Score=154.57 Aligned_cols=447 Identities=14% Similarity=0.075 Sum_probs=358.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 123 (561)
..|+..|.--..++++..|.+.|++|+..+.. ...+++..+.+-++.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r-------------------------------~itLWlkYae~Emknk~ 122 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYR-------------------------------NITLWLKYAEFEMKNKQ 122 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHhhhh
Confidence 36788888889999999999999999998632 23589999999999999
Q ss_pred HHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 124 TKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 124 ~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
...|..++++ +..-|+....|+-...+-...|+..-|..+|++-+...|+ ..+|......-...++.+.+........
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998 4555888889998888888999999999999999999995 4566666666556555555444333332
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
- .+++..+|+.+ |..-...|+..-|..+|.++++...++. ..+...|..-..+..++.|..+|+-++..-
T Consensus 202 ~----~HP~v~~wiky---arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 202 L----VHPKVSNWIKY---ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred e----ecccHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23456677776 8888899999999999999998765542 344556666677888999999999999999
Q ss_pred CCC--hHHHHHHHHHHHhcCCHh---HHH-----HHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 280 PYI--MTYMDEYAMLLKVKCDYS---KLS-----KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 280 ~~~--~~~~~~l~~~~~~~~~~~---~A~-----~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
|.+ .+.+..+...--+-|+.. +++ -.|+..++.+|.+.++|+..-.+... |+.+.-.+.|++++...|.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 988 344444444444556543 333 24778889999999999999999888 9999999999999987775
Q ss_pred Chh---------HHHHHHH-HHHhcCChhHHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Q 008550 349 HIP---------GYIMKGN-LLLSMKRPEAAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 349 ~~~---------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (561)
... .|.+.+. .-+...+.+.+.+.|+.++++-|.. ..|...+....++.+...|.+.+..++...
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c 434 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC 434 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC
Confidence 331 1222221 1245789999999999999998874 358888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHH
Q 008550 414 PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVK 490 (561)
Q Consensus 414 p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 490 (561)
|.+ ..+.....+-.+. ++++....+|++-++..|.+..+|...|.+-..+|+.+.|..+|+-++....-+ -+|-.
T Consensus 435 PK~-KlFk~YIelElqL-~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 435 PKD-KLFKGYIELELQL-REFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred Cch-hHHHHHHHHHHHH-hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 964 4444455555666 999999999999999999999999999999999999999999999999876433 57777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
....-...|.+++|...|++.++..+..+ +|...+......
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~ 553 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASA 553 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccc
Confidence 78888899999999999999999987665 999888887643
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.91 E-value=7.1e-21 Score=182.05 Aligned_cols=296 Identities=10% Similarity=-0.006 Sum_probs=237.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQ 223 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (561)
....|.+....|+++.|.+.+.++.+..|+....+.. .|.
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~ll----------------------------------------aA~ 126 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIK----------------------------------------AAE 126 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHH----------------------------------------HHH
Confidence 3566777888889999998888888877764433332 277
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNI-HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++...+..|+++.++..++.++...|++++|
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 88888999999999999888888774 56666788888999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHH----HHHHHHh-cCHhHHHHHHHHHHhccC----CChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 303 SKLVHDLLSIDPSRPEVFVA----LSVLWER-KDERGALSYAEKSIRIDE----RHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~-~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.+.+.+..+....++..... ...-... +..+++...+.++....| +++..+..++..+...|++++|...+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99988888775555443321 1111122 444555667777777777 58899999999999999999999999
Q ss_pred HHhHHhCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHhhhcCChHHHHHHHH--HHHH
Q 008550 374 RGAQELRPDLRS---YQGLVHSYLQFSKVKEALYAAREAMKAMPQSA--KALKLVGDVHASNASGREKAKKFYE--SALR 446 (561)
Q Consensus 374 ~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~--~a~~ 446 (561)
+++++..|++.. ...........++.+.+++.++++++..|+++ ..+..+|.++... |++++|.++|+ .+++
T Consensus 287 ~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 287 FDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACK 365 (409)
T ss_pred HHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhh
Confidence 999999998752 12333344556888999999999999999999 8899999999998 99999999999 5777
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 447 LEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 447 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..|+... +..+|.++.+.|+.++|.+++++++..
T Consensus 366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8887654 669999999999999999999998654
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=3.9e-20 Score=174.23 Aligned_cols=390 Identities=14% Similarity=0.090 Sum_probs=317.9
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCcHHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITALA 182 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~ 182 (561)
++..++-.+.......|++..+.+.|++. +..-...+.|+.++..+...|....|+...+..+... |.++......+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 35677888888888999999999999984 4445667889999999999999999999999998888 65555544332
Q ss_pred HHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHH
Q 008550 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF-----PNNIHILLEMAK 257 (561)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~la~ 257 (561)
..|.-+.+.+++++.+..+++... --.+..+..+|.
T Consensus 401 ---------------------------------------klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi 441 (799)
T KOG4162|consen 401 ---------------------------------------KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGI 441 (799)
T ss_pred ---------------------------------------HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 344555688889999999888732 123567777787
Q ss_pred HHHHhC-----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCCCHHHHHHHHH
Q 008550 258 VDAIIG-----------KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSRPEVFVALSV 325 (561)
Q Consensus 258 ~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 325 (561)
+|..+- ...++++.++++++.+|.|+.+.+.++.-|..+++.+.|....+++++. ..+++..|..++.
T Consensus 442 ~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 442 AYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 776432 2568999999999999999999999999999999999999999999999 5566899999999
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H---------HHHHHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R---------SYQGLVHSYL 394 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~---------~~~~l~~~~~ 394 (561)
++.. +++.+|+...+.++...|+|.........+-...++.++|+..+...+..-... . .....+....
T Consensus 522 vlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccccc
Confidence 9999 999999999999999999988888888888888999999999888877664311 1 1112222333
Q ss_pred hcCCHHHHHHHHHHHHHHC-------------C------CC-------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 395 QFSKVKEALYAAREAMKAM-------------P------QS-------AKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~-------------p------~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
..++..+|++..+++...- | .. ...|...+..+... +..++|..++.++-.++
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~-~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLS-GNDDEARSCLLEASKID 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHhcc
Confidence 3445555665555543210 1 11 34566778888877 89999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCccHHHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALS--HYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l 525 (561)
|..+..++..|.++...|+..+|.+.|..++..+|++ .....+|.++...|+..-|.. .+..+++++|.++++|+.+
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L 760 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL 760 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999998 899999999999999988888 9999999999999999999
Q ss_pred HHHHHhccCC
Q 008550 526 ERLEKQMKGV 535 (561)
Q Consensus 526 ~~l~~~~~~~ 535 (561)
+.+.+..|..
T Consensus 761 G~v~k~~Gd~ 770 (799)
T KOG4162|consen 761 GEVFKKLGDS 770 (799)
T ss_pred HHHHHHccch
Confidence 9999998743
No 55
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.4e-19 Score=158.37 Aligned_cols=460 Identities=14% Similarity=0.119 Sum_probs=354.4
Q ss_pred HhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccC
Q 008550 12 IDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTS 91 (561)
Q Consensus 12 ~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 91 (561)
..++.+..|-.+.+..+.... .....|+..+..-++.++..-|..++.+|+.+-|.
T Consensus 84 esq~e~~RARSv~ERALdvd~--------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR---------------- 139 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDY--------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR---------------- 139 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----------------
Confidence 345566666666666666532 22338899999999999999999999999998652
Q ss_pred CCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 008550 92 NRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (561)
Q Consensus 92 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 171 (561)
-...++....+--.+|+...|.++|++...-..+..+|......-.+.+..+.|...|++.+-.+
T Consensus 140 ---------------VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H 204 (677)
T KOG1915|consen 140 ---------------VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH 204 (677)
T ss_pred ---------------HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec
Confidence 24578888888888999999999999955444566888888888889999999999999999888
Q ss_pred CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--H
Q 008550 172 PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--I 249 (561)
Q Consensus 172 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~ 249 (561)
|+ ...|+..+..-...|....+.............+......+. . -|..-..++.++.|..+|+-++..-|.+ -
T Consensus 205 P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv-a--FA~fEe~qkE~ERar~iykyAld~~pk~rae 280 (677)
T KOG1915|consen 205 PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV-A--FAEFEERQKEYERARFIYKYALDHIPKGRAE 280 (677)
T ss_pred cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHhcCcccHH
Confidence 84 555666666655555443332222222111111111111111 1 1555667788999999999999999987 3
Q ss_pred HHHHHHHHHHHHhCCH---HHHH-----HHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH---
Q 008550 250 HILLEMAKVDAIIGKN---DEAI-----LNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE--- 318 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~---~~A~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 318 (561)
..+......--+-|+. ++++ -.|++.+..+|.+.++|+.+..+....|+.+.-.+.|++++...|...+
T Consensus 281 eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~ 360 (677)
T KOG1915|consen 281 ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRY 360 (677)
T ss_pred HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHH
Confidence 3333333333344553 3333 3478889999999999999999999999999999999999998776532
Q ss_pred ------HHHHHHHHHHh--cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHH
Q 008550 319 ------VFVALSVLWER--KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (561)
Q Consensus 319 ------~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (561)
.|.+.+..-.. .+.+.+.++|+.++++-|.. +..|...|....+..+...|.+.+-.++-..|.+..+
T Consensus 361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF 440 (677)
T KOG1915|consen 361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH
Confidence 23333332222 89999999999999998875 4678888889999999999999999999999999888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LG-AALALAELHVI 464 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~-~~~~la~~~~~ 464 (561)
.....+-.++++++....+|++.++..|.+..+|...|..-... |+.+.|..+|+-|+....-+ |+ .|-.....-..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L-gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL-GDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh-hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 88888899999999999999999999999999999999999998 99999999999998765433 33 44556777788
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHhcC
Q 008550 465 EGRNGDAVSLLERYLKDWADDSLHVKLAQVFA-----ATN-----------MLQEALSHYEAALRIN 515 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~ 515 (561)
.|.++.|..+|++.++..+...+|...|..-. ..| ....|...|++|....
T Consensus 520 ~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred cchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888887766 445 6778999999998763
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.3e-22 Score=169.96 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=208.6
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
-+++...+...|-......++.+..-|....+ ...+.-....+|.||+++|.+.+|.+.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~---------------------~~~dwwWk~Q~gkCylrLgm~r~Aekq 245 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTG---------------------CTLDWWWKQQMGKCYLRLGMPRRAEKQ 245 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcccccccc---------------------chHhHHHHHHHHHHHHHhcChhhhHHH
Confidence 35666777777777666666554222211111 112233556788888888888888888
Q ss_pred HhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
|+........++.+.+++++|.+..++..|+..|.+.+...|.+.......
T Consensus 246 lqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~----------------------------- 296 (478)
T KOG1129|consen 246 LQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ----------------------------- 296 (478)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh-----------------------------
Confidence 888655556678888888888888888888888888888888877666555
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
|.++...+++++|.++|+.+++.+|.+.++.-.+|.-|+..++++-|+.+|++++++.-.+++.+.++|
T Consensus 297 -----------ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig 365 (478)
T KOG1129|consen 297 -----------ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG 365 (478)
T ss_pred -----------HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence 667777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCC---CHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPS---RPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP 366 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 366 (561)
.|+...++++-++..|++++....+ ..++|+++|.+... ||+.-|..+|+-++..+|++.+++.++|.+-.+.|+.
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 8888888888888888888765432 25678888887777 8888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhHHhCCCh
Q 008550 367 EAAVIAFRGAQELRPDL 383 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~ 383 (561)
++|..++..+-...|+-
T Consensus 446 ~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 446 LGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHhhhhCccc
Confidence 88888888777777764
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.90 E-value=7.8e-21 Score=188.58 Aligned_cols=268 Identities=12% Similarity=-0.011 Sum_probs=221.2
Q ss_pred CCCCHH--HHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc---------CCHhHHHHHHHHHH
Q 008550 245 FPNNIH--ILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK---------CDYSKLSKLVHDLL 310 (561)
Q Consensus 245 ~~~~~~--~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~ 310 (561)
.|.+.+ .++..|..+... +.+++|+..|+++++.+|+++.++..+|.++... +++++|...+++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 444444 344455544433 3467999999999999999999999998877643 34789999999999
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH-HHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR-SYQG 388 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 388 (561)
+.+|+++.++..+|.++.. |++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+. .+..
T Consensus 332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 9999999999999999988 9999999999999999999999999999999999999999999999999999974 4455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
++.++...|++++|+..+++++... |+++..+..+|.++... |++++|...+.++....|....++..++..+...|+
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~-G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK-GKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC-CCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 6667788899999999999998875 78888999999999988 999999999999988888888888889999888884
Q ss_pred hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 468 NGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
.|...++++++..... ........++.-.|+.+.+..+ +++.+.++
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7777777766644322 2233378888888998888877 77766544
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.90 E-value=5.2e-19 Score=163.48 Aligned_cols=431 Identities=16% Similarity=0.143 Sum_probs=307.8
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+.+...++..+.-.|..++|.+.++..+.++...|..+ +..-..|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHg-------------------------------eslAmkGL~L~ 52 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHG-------------------------------ESLAMKGLTLN 52 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccc-------------------------------hhHHhccchhh
Confidence 34556889999999999999999999999999876554 45677888999
Q ss_pred hcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcc
Q 008550 120 ALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQT 198 (561)
Q Consensus 120 ~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (561)
.+|+-++|...... +..++.+...|..+|.++...++|++|+.+|+.+++.+|+|...+..++.+...++++......-
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999998887 67778999999999999999999999999999999999999999999988888777777666555
Q ss_pred ccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHhCCHHHHHH
Q 008550 199 PNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF---PNN-----IHILLEMAKVDAIIGKNDEAIL 270 (561)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~-----~~~~~~la~~~~~~~~~~~A~~ 270 (561)
.......+ .....|+.+ |..+...|++..|..+++...+.. |+. .........+....|.+++|++
T Consensus 133 ~~LLql~~---~~ra~w~~~---Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 133 NQLLQLRP---SQRASWIGF---AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHhhh---hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 44443332 234555555 778888888888888888777654 322 2445556667777888888887
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH-HHHHHHHhccCC
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL-SYAEKSIRIDER 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~-~~~~~~~~~~~~ 348 (561)
.+..--..--+........+.++...+++++|...+..++..+|++...+..+-.++.. .+--+++ ..|...-+..|.
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 77665444344445566778888888999999999988888888888877777776653 4444555 445544444443
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHH-HHhHHh-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HH-------
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAF-RGAQEL-RPDLRSYQGLVHSYLQFSKVKEALYAAREAM-------KA------- 412 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~------- 412 (561)
...-..++.....-.++......| ...++. -|. .+..+-..|-.-. +. .++++.+ .-
T Consensus 287 -~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--vf~dl~SLyk~p~---k~-~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 287 -HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--VFKDLRSLYKDPE---KV-AFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred -cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--hhhhhHHHHhchh---Hh-HHHHHHHHHHHhhcccccCCCcc
Confidence 333333443333334444444333 222222 121 1112222221111 11 1222222 11
Q ss_pred -----CCCCH--HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 413 -----MPQSA--KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 413 -----~p~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.|..+ ..++.++.-+... |+++.|..++..++...|+.++.+..-|+++...|+.++|..+++.+.+.+..+
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 12222 3345677777777 999999999999999999999999999999999999999999999999998777
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 486 S-LHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 486 ~-~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
. +....|....+.++.++|.+...+.-+..
T Consensus 439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 439 RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 4 44488999999999999998887765443
No 59
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.90 E-value=2.9e-20 Score=179.16 Aligned_cols=406 Identities=15% Similarity=0.103 Sum_probs=281.0
Q ss_pred cCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccc
Q 008550 121 LGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTP 199 (561)
Q Consensus 121 ~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 199 (561)
.++...|...|-+ +...+.-..++..+|.+|+..-+...|..+|.+++.++|.+.+++...+..+....+++.++....
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3446777776554 677788889999999999999999999999999999999999999999999999999999888865
Q ss_pred cccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 200 NRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
...+..+. .....+|.. +|..+...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++
T Consensus 551 ~~~qka~a-~~~k~nW~~---rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 551 RAAQKAPA-FACKENWVQ---RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHhhhchH-HHHHhhhhh---ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 55444332 223344444 58899999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHh-cCHhHHHHHHHHHHhc------
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP-------EVFVALSVLWER-KDERGALSYAEKSIRI------ 345 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~-~~~~~A~~~~~~~~~~------ 345 (561)
|.+.-+.+..+.+....|+|.+|+..+...+....... +.+...+..+.. |=..+|..++++.++.
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876554332 333333333322 4344455544444332
Q ss_pred -c----------------------CC-----------------------------------------ChhHHHHHHHHHH
Q 008550 346 -D----------------------ER-----------------------------------------HIPGYIMKGNLLL 361 (561)
Q Consensus 346 -~----------------------~~-----------------------------------------~~~~~~~l~~~~~ 361 (561)
. |+ ++..|+++|.-|+
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1 11 0122455555444
Q ss_pred h--------cCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 362 S--------MKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 362 ~--------~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+ +.+...|+.++.+++++..++ ..|..+|.+ ...|++.-|..+|-+.....|.+...|.++|.++... .
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n-~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN-Q 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec-c
Confidence 3 122235666666666665555 335555555 4456666666666666666666666666666666665 6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHcCCHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD------DSLHVKLAQVFAATNMLQEALS 506 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 506 (561)
+++.|...|.++..++|.+...|...+.+....|+.-++...+....+.... -..|..-.......|++++-+.
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 6666666666666666666666666666666666666666666654333221 1344444445555555554433
Q ss_pred H----------HHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 507 H----------YEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 507 ~----------~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
. .++.+.-.|+...++...+.+.+.+
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence 3 2333444666666666655555544
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.90 E-value=7.3e-20 Score=174.03 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=197.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIH-ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
+......|+++.|..++.++.+.+|++.. .....+.++...|++++|+..+++..+.+|+++.++..++.++...|+++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 55557777788888888777777777643 33344777777788888888888888888888877777788888888888
Q ss_pred HHHHHHHHHHhcCCCCHHHHH--------HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFV--------ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~--------~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
+|+..+.++.+..+.++.... .+...... .+.+...+.++..-...|+++.+...++..+...|+.++|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888777777776655543222 11111112 334445555555555667789999999999999999999999
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
.++++++..|+.......+. ...++++++++.+++.++.+|+++..+..+|.++... +++++|.++|+++++..|++
T Consensus 285 ~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 285 IILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCH
Confidence 99999996665544333333 3559999999999999999999999999999999998 99999999999999999986
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
..+..++.++.+.|+.++|..+|++++...
T Consensus 362 -~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 -YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456689999999999999999999998754
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.5e-20 Score=186.50 Aligned_cols=260 Identities=14% Similarity=0.038 Sum_probs=222.6
Q ss_pred HHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhhCCCChHH
Q 008550 218 RYVEAQCCIAS---NDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG---------KNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 218 ~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
.++.|...... +.+++|+..|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.+
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a 340 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA 340 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence 45556554433 45789999999999999999999999999887543 4899999999999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK 364 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (561)
+..+|.++...|++++|+..++++++.+|+++.+++.+|.++.. |++++|+..++++++++|.++..+..++.++...|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999888777777888899
Q ss_pred ChhHHHHHHHHhHHhC-CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELR-PDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE 442 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (561)
++++|+..+++++... |+. ..+..+|.++...|++++|...+.++....|.....+..++..+... | +.|...++
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~a~~~l~ 497 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN-S--ERALPTIR 497 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc-H--HHHHHHHH
Confidence 9999999999999875 555 45888999999999999999999999999999899999999998877 6 47777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 443 SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+.++.....+.-......++.-.|+.+.+..+ +++.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 76664332222233377888888888888777 666554
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.6e-22 Score=166.87 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=220.4
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
....|+-.-..|.||++.|.+.+|...++..++..|. ++.+..++.+|.+..++..|+..+...++..|.+...+...+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~A 297 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQA 297 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhH
Confidence 4455666666799999999999999999999988875 888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
+++..+++.++|.++|+.+++.+|.+.++.-.++.-|.- ++++-|+.+|.+.+++...+++.+.++|.|++..++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999999999999999999988888887777 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhCC--Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q 008550 370 VIAFRGAQELRP--DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESAL 445 (561)
Q Consensus 370 ~~~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 445 (561)
+..|++++.... +. .+|+++|.+....|++.-|..+|+-++..+|++..++.++|.+-.+. |+.++|..++..+-
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~-G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS-GDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc-CchHHHHHHHHHhh
Confidence 999999988743 33 56999999999999999999999999999999999999999888887 99999999999998
Q ss_pred HhCCCCHHHHHHHHHH
Q 008550 446 RLEPGYLGAALALAEL 461 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~ 461 (561)
...|.-.+..++++.+
T Consensus 457 s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 457 SVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhCccccccccceeEE
Confidence 8888877766665543
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.88 E-value=1.2e-20 Score=181.82 Aligned_cols=372 Identities=11% Similarity=-0.030 Sum_probs=209.6
Q ss_pred cCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHH
Q 008550 154 SRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKG 233 (561)
Q Consensus 154 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (561)
.++...|...|-++++++|....++..|+..+....+...+..-........+. +...+... +..+.+..+++.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~---adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAAS---ADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHH---HHHhhccccHHH
Confidence 455888999999999999999888888855554433333333222222221111 11111111 444444444444
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 234 GLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 234 A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
|..+.-..-+..|.. ...|..+|-.|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 444433333333321 123333444444455555555555555555555555555555555555555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHhHHhC---
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-------PGYIMKGNLLLSMKRPEAAVIAFRGAQELR--- 380 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 380 (561)
++|.+.-..+..+.+... |.|.+|+..+...+....... ..+...+..+...|-...|...++++++..
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 555444444444444444 555555555444443322211 222222222333333333444444333321
Q ss_pred -----CCh-HHHHHHHHHHHh-----------------------cCCH---H---HHHHHHHHHHHHCCCCHHHHHHHHH
Q 008550 381 -----PDL-RSYQGLVHSYLQ-----------------------FSKV---K---EALYAAREAMKAMPQSAKALKLVGD 425 (561)
Q Consensus 381 -----~~~-~~~~~l~~~~~~-----------------------~~~~---~---~A~~~~~~~~~~~p~~~~~~~~l~~ 425 (561)
-++ -.|..++..+.- .+.. + -+.+++-..++.. .++..|+++|.
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGi 783 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGI 783 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhH
Confidence 001 012111111100 0000 0 0111111111111 11567888887
Q ss_pred HHhhh-------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHH
Q 008550 426 VHASN-------ASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAA 497 (561)
Q Consensus 426 ~~~~~-------~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~ 497 (561)
-+... ..+...|+.++.+++++..++...|..||.+ ...|++.-|...|-+.+...|.. ..|.++|.++..
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 77651 1233589999999999999999999999988 66699999999999999999987 899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 498 TNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+++-|...|.++..++|.|...|...+.+-+.+|
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 999999999999999999999999999988877665
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-17 Score=153.01 Aligned_cols=447 Identities=15% Similarity=0.107 Sum_probs=276.3
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.++..++....++.|++|...+..++.+.+.... ++...--++.+.++|++|+... +.++...
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~--------a~~cKvValIq~~ky~~ALk~i----kk~~~~~----- 76 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED--------AIRCKVVALIQLDKYEDALKLI----KKNGALL----- 76 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh--------hHhhhHhhhhhhhHHHHHHHHH----Hhcchhh-----
Confidence 4678889999999999999999999998543333 6777777889999999998443 3332110
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVA 162 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 162 (561)
......+..|.|.++++..++|+..++.+. +.+.....+.|++++++|+|++|..
T Consensus 77 -----------------------~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~--~~~~~ll~L~AQvlYrl~~ydeald 131 (652)
T KOG2376|consen 77 -----------------------VINSFFFEKAYCEYRLNKLDEALKTLKGLD--RLDDKLLELRAQVLYRLERYDEALD 131 (652)
T ss_pred -----------------------hcchhhHHHHHHHHHcccHHHHHHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHH
Confidence 001123789999999999999999999443 4445688899999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
+|+.+++.+.+..+.-....-+.....-.....+ ..+.. ....+...|..|.++...|+|.+|++.+++++
T Consensus 132 iY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q-------~v~~v--~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 132 IYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ-------SVPEV--PEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH-------hccCC--CcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998887666554433111000000000000 00100 12234445555666666666666666666654
Q ss_pred HhCC-----C--C--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 243 QRFP-----N--N--------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 243 ~~~~-----~--~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
+... + + ..+...++.++..+|+..+|...|...++.+|.+........+-+.
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv------------- 269 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV------------- 269 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh-------------
Confidence 3210 0 0 1233344444444444444444444444444444322211111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCHh--HHHHHHHHHHhcc----------CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 308 DLLSIDPSRPEVFVALSVLWERKDER--GALSYAEKSIRID----------ERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~A~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
.+-...++. .++..++...... .....++.+.+.+.+..+..+.+.+....
T Consensus 270 -----------------a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 270 -----------------ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred -----------------hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 000001111 1111111111100 01123456667777777777777766666
Q ss_pred hHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHhhhcCChHHHHHHHHHHH--------
Q 008550 376 AQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQS-AKALKLVGDVHASNASGREKAKKFYESAL-------- 445 (561)
Q Consensus 376 ~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~a~-------- 445 (561)
.-...|.... .........+...+.+|...+....+.+|.+ ..+...++.+.... |+++.|++.+....
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~-gn~~~A~~il~~~~~~~~ss~~ 411 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ-GNPEVALEILSLFLESWKSSIL 411 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhhhhhh
Confidence 5555565522 1222222233337888999999999999987 66778888888888 99999999998333
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 446 RLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 446 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+.. ..|.+...+..++.+.++.+.|...+.+++...... ..+...+.+-.+.|+-++|...+++.++.+|+
T Consensus 412 ~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 412 EAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred hhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 222 345566667777888888888888888887654211 56677788888889999999999999999999
Q ss_pred cHHHHHHHHHHHHhc
Q 008550 518 NEAAKKGLERLEKQM 532 (561)
Q Consensus 518 ~~~~~~~l~~l~~~~ 532 (561)
+.++...+.-.+..+
T Consensus 491 d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL 505 (652)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999888777665543
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=9.6e-20 Score=165.67 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=159.5
Q ss_pred cCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHH
Q 008550 229 NDYKGGLELFAELLQRFP----NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSK 304 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 304 (561)
+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566778888888886433 2366788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh
Q 008550 305 LVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL 383 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 383 (561)
.|+++++++|++..++..+|.++.. |++++|+..++++++.+|+++.... ...+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 8888888888888888888888877 8888888888888888888763211 1223345667888888886655443221
Q ss_pred HHHHHHHHHHHhcCCHHHH--HHHHH----HHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC-CCHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEA--LYAAR----EAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEP-GYLGAAL 456 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A--~~~~~----~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~ 456 (561)
.|. .+.+....|+..++ +..+. ...+..|..+.+|+.+|.++... |++++|+.+|+++++.+| +.++..+
T Consensus 199 -~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~-g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 199 -QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSL-GDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred -ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 111 23444445544332 22222 22244555666777777777776 777777777777777775 5555555
Q ss_pred HHHHHHHH
Q 008550 457 ALAELHVI 464 (561)
Q Consensus 457 ~la~~~~~ 464 (561)
.+..+...
T Consensus 276 ~~~e~~~~ 283 (296)
T PRK11189 276 ALLELALL 283 (296)
T ss_pred HHHHHHHH
Confidence 55444443
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=171.97 Aligned_cols=225 Identities=14% Similarity=0.077 Sum_probs=98.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.-.+
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhcCCCCHHHHHH-------HHHHHHh-cCHhHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVA-------LSVLWER-KDERGALSYAEKSIRIDE--RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~-~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|..++.+.+...|........ ...-... ..+..-.+.|..+....| .++++...||.+|...|+|++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 444444444333221110000 0000000 112223333334444444 344455555555555555555555
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+|+.++...|++. .|..+|-.+....+..+|+..|++++++.|....+++++|..+... |.|.+|+++|-.++.+
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHHHHHHHh
Confidence 5555555555542 2555555555555555555555555555555555555555555554 5555555555555544
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=1.3e-19 Score=164.76 Aligned_cols=229 Identities=15% Similarity=0.070 Sum_probs=135.8
Q ss_pred CHhHHHHHHHHHHhcCC----CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDP----SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
..+.++..+.+++...| ..+..|+.+|.++.. |++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33444444444543222 124456666666666 6666666666666666666666666666666666666666666
Q ss_pred HHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 373 FRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 373 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
|+++++++|++ .++.++|.++...|++++|++.+++++..+|+++...... .+.... +++++|+..+.++....+..
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~-~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESK-LDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHcc-CCHHHHHHHHHHHHhhCCcc
Confidence 66666666665 4466666666666666666666666666666665321111 122233 66677777776655432221
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-ccHHHH
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYL-------KDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS-QNEAAK 522 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 522 (561)
.+. .+.+....|+...+ ..++.+. +..|.. ++|+.+|.++...|++++|+.+|+++++.+| ++.+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 34444455555433 2222222 222333 6788888888888888888888888888885 777777
Q ss_pred HHHHHHHHhc
Q 008550 523 KGLERLEKQM 532 (561)
Q Consensus 523 ~~l~~l~~~~ 532 (561)
..+..+....
T Consensus 275 ~~~~e~~~~~ 284 (296)
T PRK11189 275 YALLELALLG 284 (296)
T ss_pred HHHHHHHHHH
Confidence 7676666553
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.87 E-value=2.7e-18 Score=158.78 Aligned_cols=467 Identities=13% Similarity=0.057 Sum_probs=337.6
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCcccccc
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNST 82 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (561)
.+|..+-..++.++|.....+++.+++. .+...+++-.+|..+...|+-++|...-+.++..++..+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----- 75 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----- 75 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc-----
Confidence 3677888999999999999999999985 234455889999999999999999999999999875433
Q ss_pred chhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHH
Q 008550 83 SSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAV 161 (561)
Q Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 161 (561)
..|-.+|..+...++|++|++.+.. +...|++...+.-++.+..+.|+++-..
T Consensus 76 --------------------------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 76 --------------------------VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred --------------------------hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 4788899999999999999999998 5666999999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC--CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 008550 162 ACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP--FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFA 239 (561)
Q Consensus 162 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 239 (561)
..-.+.++..|.....|..++..+...++...+...+........ ++..+-......+.+.......|.+++|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999998888888888777776665544432 333334444456667888889999999998887
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH-HHHHHHHhcCCCCHH
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS-KLVHDLLSIDPSRPE 318 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~ 318 (561)
.--...-+........|.++..++++++|...|...+..+|++...+..+-.++..-.+-.++. ..|...-+..|.. .
T Consensus 210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e 288 (700)
T KOG1156|consen 210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-E 288 (700)
T ss_pred hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-c
Confidence 7655555556677788999999999999999999999999999999888888886333333444 5666555554443 3
Q ss_pred HHHHHHHHHHh-cCHhHHHH-HHHHHHhccCCChhHHHHHHHHHHhcCC---hhHHHHHHHHhHHh-------------C
Q 008550 319 VFVALSVLWER-KDERGALS-YAEKSIRIDERHIPGYIMKGNLLLSMKR---PEAAVIAFRGAQEL-------------R 380 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~-------------~ 380 (561)
....++..... .++...+. ++...++.. -+.+...+-.+|-.-.. .++-+..|...+.- .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 33334433333 23332222 223333221 12222222222211110 01111111111111 1
Q ss_pred CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 008550 381 PDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALAL 458 (561)
Q Consensus 381 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 458 (561)
|.. ..++.++..+...|+++.|..+++.++...|.-++.+...|.++... |++++|..++..+.+++..+..+-...
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~-G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHA-GLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccchhHHHHHHH
Confidence 111 23567788888899999999999999999998889998899998887 999999999999888886665555577
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 008550 459 AELHVIEGRNGDAVSLLERYLKDWADD--------SLHVKL--AQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~l--a~~~~~~g~~~~A~~~~~~al 512 (561)
|....+.++.++|.+.+.+.-+...+. -.|+.+ |..|.++|++..|++-|..+-
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 888888889999988888766544211 244443 777888888877776655543
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1.6e-20 Score=171.45 Aligned_cols=254 Identities=20% Similarity=0.175 Sum_probs=216.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cC
Q 008550 253 LEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KD 331 (561)
Q Consensus 253 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 331 (561)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|.. |.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HhHHHHHHHHHHhccCCChhHHHH-------HHHHHHhcCChhHHHHHHHHhHHhCC---ChHHHHHHHHHHHhcCCHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIM-------KGNLLLSMKRPEAAVIAFRGAQELRP---DLRSYQGLVHSYLQFSKVKE 401 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 401 (561)
-.+|++++.+-+...|........ ...-......+..-.+.|-.+....| +..+...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 889999999999887653221110 00001111123334455666665555 34679999999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
|+.+|+.++...|++...|+.+|..+..- .+.++|+..|.+|+++.|....+++++|..+..+|.|++|.++|-.++.+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986 89999999999999999999999999999999999999999999999987
Q ss_pred CCC-----------hHHHHHHHHHHHHcCCHHHHHHH
Q 008550 482 WAD-----------DSLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 482 ~~~-----------~~~~~~la~~~~~~g~~~~A~~~ 507 (561)
.+. ..+|..|-.++...++.+-+...
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 643 14888888888888888755544
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=5.6e-18 Score=145.33 Aligned_cols=418 Identities=14% Similarity=0.131 Sum_probs=298.0
Q ss_pred HHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhh
Q 008550 8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS 87 (561)
Q Consensus 8 ~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 87 (561)
+..++.+.+|+-|+.+.++-+.. ..++.-....++|.++|+.|+|++|+..|+-+.+.+
T Consensus 29 Ledfls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------------- 87 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------------- 87 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--------------
Confidence 45667777888888877776543 123334567788888888888888888888877643
Q ss_pred cccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 88 LSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
..+.++...+|.|+.-+|.|.+|.....+.+..|-..+.++.++ .+.|+-++ +..|..-
T Consensus 88 -----------------~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~-~~~fh~~ 146 (557)
T KOG3785|consen 88 -----------------DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKR-ILTFHSS 146 (557)
T ss_pred -----------------CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHH-HHHHHHH
Confidence 13345777888888888888888888877766654433333333 33344322 2233332
Q ss_pred HhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008550 168 LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN 247 (561)
Q Consensus 168 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 247 (561)
+.... +-. +.+|.+.+..-.|.+|+++|.+++..+|+
T Consensus 147 LqD~~---Edq----------------------------------------LSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 147 LQDTL---EDQ----------------------------------------LSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HhhhH---HHH----------------------------------------HhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 22111 111 22267777778899999999999999998
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc--CCHhHH----------------HHHHH--
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK--CDYSKL----------------SKLVH-- 307 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A----------------~~~~~-- 307 (561)
.......+|.||.++.-++-+.+.+.-.++..|+++-+....+..+++. |+..++ ..+++
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 8888889999999999999999999999999999987777666655543 222211 11111
Q ss_pred --------HHHhcCC----CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 008550 308 --------DLLSIDP----SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (561)
Q Consensus 308 --------~~~~~~~----~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 374 (561)
.+++.-| .-|++..++...|.. ++..+|+...+. ++|..|.-+...|.++...|+--...+.++
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1111112 126778888888888 999999887764 689999999999999998887655554444
Q ss_pred Hh---HHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q 008550 375 GA---QELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESA 444 (561)
Q Consensus 375 ~~---~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 444 (561)
-+ +.+-..+ +....++.+++-..++++.+.++...-...-++....++++.+.... |++.+|.+.|-+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at-gny~eaEelf~~i 419 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT-GNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh-cChHHHHHHHhhh
Confidence 43 3332211 23667888888889999999999998888888999999999999998 9999999999876
Q ss_pred HHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 445 LRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-D--SLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 445 ~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
-...-.+ ......+++||.+.|.++-|...+-+ .+.+ . ..+..+|...++.+++--|.+.|...-.++|+
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5444223 33446789999999999999988754 3322 2 56677788888999999999999988888875
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=3.3e-18 Score=144.98 Aligned_cols=291 Identities=20% Similarity=0.260 Sum_probs=223.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 145 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
+..|.-+.-.++.++|+..|..+++.+|...++...| |..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltL----------------------------------------GnL 78 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTL----------------------------------------GNL 78 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHH----------------------------------------HHH
Confidence 3455566667778888888888888888777777666 677
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 225 CIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.+.|..+.|+.+-+.+++. |+- ..+...+|.-|+..|-++.|...|....+....-..++..+..+|....+|
T Consensus 79 fRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 79 FRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred HHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 77778888888877766653 322 356778888888888888888888888776655667888888888888888
Q ss_pred hHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 300 SKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
++|++..++..++.+.. +..+..++..+.. .+.+.|+..+.++++.+|+...+-+.+|.+....|+|+.|++.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence 88888888888877766 3467778877777 89999999999999999999999999999999999999999999
Q ss_pred HHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 374 RGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 374 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
+.+++.+|+. .+...+..+|...|+.++.+.++.++.+..+. +.+...++...... .-.+.|..++.+-+...|+-
T Consensus 238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~-~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ-EGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh-hChHHHHHHHHHHHhhCCcH
Confidence 9999999997 56788899999999999999999999988874 45555566666665 66788888888888888875
Q ss_pred HHHHHHHHHHHHH---cCChHHHHHHHHHHH
Q 008550 452 LGAALALAELHVI---EGRNGDAVSLLERYL 479 (561)
Q Consensus 452 ~~~~~~la~~~~~---~g~~~~A~~~~~~~~ 479 (561)
...+ .+...... .|...+.+..+.+++
T Consensus 316 ~gf~-rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 316 RGFH-RLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHH-HHHHhhhccccccchhhhHHHHHHHH
Confidence 3333 33333322 233455555555544
No 72
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-19 Score=157.86 Aligned_cols=292 Identities=19% Similarity=0.188 Sum_probs=242.4
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
.....++-....|..++++..|.+|+..|..|++.+|++. ..|...+.+
T Consensus 44 ~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a-------------------------------~yy~nRAa~ 92 (486)
T KOG0550|consen 44 EAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA-------------------------------SYYSNRAAT 92 (486)
T ss_pred hHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch-------------------------------hhhchhHHH
Confidence 4566677888899999999999999999999999987553 467788999
Q ss_pred HHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 118 HFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
++..|++++|.-..+. +...+.........++++...++..+|...++ +..+. .+..
T Consensus 93 ~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~--------------~~an 150 (486)
T KOG0550|consen 93 LMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY--------------KAAN 150 (486)
T ss_pred HHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh--------------HHhh
Confidence 9999999999998866 66668888899999999999999999988887 11111 0111
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
.+.......+.....+.-+...++.+.|+...|++++|...--.+++.++.+.++++..|.+++..++.+.|+.+|++++
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal 230 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL 230 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh
Confidence 11122222232333355555677889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCh------------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh-cCHhHHHHHH
Q 008550 277 SIDPYIM------------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP----EVFVALSVLWER-KDERGALSYA 339 (561)
Q Consensus 277 ~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~-~~~~~A~~~~ 339 (561)
.++|+.. ..+..-|.-.++.|++..|.++|..++.++|++. ..|.+.+.+..+ |+..+|+...
T Consensus 231 ~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 231 RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 9999874 3456678888899999999999999999999873 457777788888 9999999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 340 EKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
+.++.++|....++...|.++..++++++|++.|+++++...+
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999888665
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=6.2e-19 Score=142.59 Aligned_cols=202 Identities=18% Similarity=0.169 Sum_probs=117.7
Q ss_pred HHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc
Q 008550 319 VFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF 396 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 396 (561)
+...+|.-|.. |++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++++.|++ +++++.|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 44455555555 555555555555555555555555555555555555555555555555555555 4455555555555
Q ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 008550 397 SKVKEALYAAREAMK--AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
|++++|...|++++. ..|..+..+.++|.|..+. |+++.|.++|+++++.+|+++.....++..++..|++..|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555554 2344455666666666665 6666666666666666666666666666666666666666666
Q ss_pred HHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 475 LERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 475 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
+++.....+.. +.+....++-...|+-..|-++=.+..+..|..++.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 66655544422 445555556666666666666666666666655543
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.7e-20 Score=160.22 Aligned_cols=266 Identities=17% Similarity=0.125 Sum_probs=209.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
.-.|..++...+|..|+..+..+++..|++...|...+.++...|++++|....++.++++|..+......+.++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34478889999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhHHHHHHHHHH------------hcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH
Q 008550 299 YSKLSKLVHDLL------------SIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL 359 (561)
Q Consensus 299 ~~~A~~~~~~~~------------~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 359 (561)
..+|...++..- .+.|.+ ..+-..-+.++.. +++++|...--..+++++.+..+.+..|.+
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 887776554211 111111 1233344556666 888888888888888888888888888888
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChH-------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLR-------------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKL 422 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~ 422 (561)
+...++.+.|+..|++++.++|+.. .+..-|.-.++.|++.+|.+.|..++.++|++ +..+.+
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 8888888888888888888888751 24455666777778888888888888777765 455677
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++.+.... |+..+|+.....+++++|....++...|.|+..++++++|++.++++++...+.
T Consensus 293 ra~v~~rL-grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 293 RALVNIRL-GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred hHhhhccc-CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 77777776 777888888888888877777777777888888888888888888877776554
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.4e-17 Score=141.30 Aligned_cols=270 Identities=18% Similarity=0.218 Sum_probs=142.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-----hHHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-----MTYMDEYAML 292 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~ 292 (561)
.|..|.-+.-..+.++|+..|..+++.+|...++.+.+|..+...|..+.|+.+-+..++. |+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666666666666665554432 332 2345555666
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
|+..|-++.|..+|..+.+....-..+...+..+|.. .+|++|++.-++..++.+...... ++
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--IA-------------- 180 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--IA-------------- 180 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH--HH--------------
Confidence 6666666666666655555444444555555555555 555555555555555554432110 00
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
..|..++..+....+.+.|+..+.++++.+|++..+-..+|.+.... |+++.|++.++.+++.+|..
T Consensus 181 ------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~-g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 181 ------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAK-GDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred ------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc-cchHHHHHHHHHHHHhChHH
Confidence 01334444444445555555555555555555555555555555554 55555555555555555544
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 452 -LGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 452 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
+++...+..+|.+.|+..+....+.++.+..+....-..++..-....-.+.|..+..+-+...|+
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 234444555555555555555555555555554444444444444444445555555555555443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.7e-18 Score=138.96 Aligned_cols=203 Identities=15% Similarity=0.102 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
....+|.-|+..|++..|..-++++++.+|++..+|..+|.+|...|+.+.|.+.|+++++++|++.+++.++|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 34555888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 297 CDYSKLSKLVHDLLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
|++++|...|++++.. .|..+..+.++|.|..+ |+++.|..+|++++..+|+.+.....++..++..|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 9999999999888863 44556788888888888 88888888888888888888888888888888888888888888
Q ss_pred HHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH
Q 008550 374 RGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA 419 (561)
Q Consensus 374 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 419 (561)
+......+-. +++.....+--..|+-+.+-.+=.+....+|.....
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8776665433 445555666677777777777777777777766554
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=2.4e-18 Score=153.70 Aligned_cols=196 Identities=14% Similarity=0.074 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555554444444444444
Q ss_pred h-cCHhHHHHHHHHHHhcc--CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008550 329 R-KDERGALSYAEKSIRID--ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 329 ~-~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
. |++++|+..+++++... |... ..+..+|.++...|++++|...
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~---------------------------------~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPA---------------------------------RSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccch---------------------------------HHHHHHHHHHHHcCCHHHHHHH
Confidence 4 44444444444444321 1112 2344444555555555555555
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 406 AREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 406 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+.+++...|+++..+..+|.++... |++++|...+++++...|.++..+..++.++...|+.++|..+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLR-GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555555555555555554 55555555555555544444444444455555555555554444443
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=3.1e-18 Score=152.92 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
....+..|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++..|.+...+..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSID--PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
..|++++|+..+++++... +.....+..+|.++.. |++++|...+.+++...|.++..+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999853 4556788889999988 999999999999999999988888899999999999999999
Q ss_pred HHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 372 AFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 372 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+++++...|.. ..+..++.++...|+.++|..+.+.+....|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 998888886655 4566777888888888888887777665543
No 79
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=7.1e-18 Score=152.36 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH--hHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE--RGALSY 338 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~A~~~ 338 (561)
++.++|+..+.++++++|.+..+|...+.++...| ++++++..+++++..+|++..+|...+.++.. ++. ++++.+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 34445555555555555555555555555555554 34555555555555555555555555544444 332 345555
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhc---CC----HHHHHHHHHHHH
Q 008550 339 AEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQF---SK----VKEALYAAREAM 410 (561)
Q Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~----~~~A~~~~~~~~ 410 (561)
++++++.+|++..+|..++.++...|++++++..+.++++.+|.+ .+|..++.+.... |. .++++.+..+++
T Consensus 131 ~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 131 TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555554 3455555544433 11 245666777777
Q ss_pred HHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 411 KAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
..+|++..+|..++.++... .++..+|...+.+++...|.++.++..++.++..
T Consensus 211 ~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77777777777777777662 0344567777777777777777777777777764
No 80
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=2.2e-17 Score=149.23 Aligned_cols=243 Identities=12% Similarity=0.036 Sum_probs=203.2
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c-CHhHHHHHHH
Q 008550 263 GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K-DERGALSYAE 340 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~A~~~~~ 340 (561)
++|.+|..+|+.++. ..++.++|+..+.+++.++|.+..+|...+.++.. | ++++++..++
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 455566666665544 45677899999999999999999999999999988 6 6899999999
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCCh--hHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRP--EAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
++++.+|++..+|..++.++...|+. ++++.++.++++.+|.+ .+|...+.++...|+++++++.+.++++.+|.+.
T Consensus 97 ~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~ 176 (320)
T PLN02789 97 DVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN 176 (320)
T ss_pred HHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch
Confidence 99999999999999999999988874 78899999999999998 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh--cCC----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCh-H
Q 008550 418 KALKLVGDVHASN--ASG----REKAKKFYESALRLEPGYLGAALALAELHVI----EGRNGDAVSLLERYLKDWADD-S 486 (561)
Q Consensus 418 ~~~~~l~~~~~~~--~~~----~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~-~ 486 (561)
.+|+.++.++... .|. .++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.+ .
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 9999999987654 022 2578888899999999999999999999988 456678999999998887766 7
Q ss_pred HHHHHHHHHHHcC------------------CHHHHHHHHHHHHhcCCccHHHH
Q 008550 487 LHVKLAQVFAATN------------------MLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 487 ~~~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
++..++.+|.... ..++|...++..-+.+|=-..-|
T Consensus 257 al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 257 ALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHH
Confidence 7888888887632 23567777777655555433333
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.80 E-value=3.8e-16 Score=148.43 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=137.8
Q ss_pred cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 137 KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
+|+.+..+..+|.++...|+++.|...+.++.+..|.+......
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~------------------------------------ 45 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER------------------------------------ 45 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH------------------------------------
Confidence 46777788888888888888888888888887777754332211
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKND----EAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
.+..+..+...|++++|...+++++..+|++..++.. +..+...|++. .+...+......+|.....+..+|.+
T Consensus 46 -~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 46 -AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 2334777778888888888888888888888766654 44554444433 33333333223445555566666777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 367 (561)
+...|++++|...++++++..|+++.++..+|.++.. |++++|+.++++++...|.++ ..+..+|.++...|+++
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 7777777777777777777777777777777777776 777777777777777665432 23445677777777777
Q ss_pred HHHHHHHHhHHhCC
Q 008550 368 AAVIAFRGAQELRP 381 (561)
Q Consensus 368 ~A~~~~~~~~~~~~ 381 (561)
+|+..+++++...|
T Consensus 204 ~A~~~~~~~~~~~~ 217 (355)
T cd05804 204 AALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHhcccc
Confidence 77777776654444
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.79 E-value=2e-15 Score=143.57 Aligned_cols=298 Identities=12% Similarity=-0.037 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 216 LHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+.+...|..+...|+.+.+...+.++.+..|.+ .+.....+.++...|++++|...++++++.+|.+..++.. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 334444888888899999999999888876644 5677788999999999999999999999999999877664 445
Q ss_pred HHhcC----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 008550 293 LKVKC----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 293 ~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (561)
+...| ....+...+.......|.....+..+|.++.. |++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 54444 44445555544445566667777888889998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CHHHHHHH---HHHHhhhcCChHHH
Q 008550 368 AAVIAFRGAQELRPDL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SAKALKLV---GDVHASNASGREKA 437 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l---~~~~~~~~~~~~~A 437 (561)
+|+..+++++...|.. ..+..++.++...|++++|+..+++++...|. ........ ...+... |....+
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 244 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA-GHVDVG 244 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc-CCCChH
Confidence 9999999999987632 23668999999999999999999999766662 22211111 2222222 433333
Q ss_pred HHH--H-HHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----------hHHHHHHHHHHHHcCCHH
Q 008550 438 KKF--Y-ESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD----------DSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 438 ~~~--~-~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~ 502 (561)
..+ . .......|. ........+.++...|+.++|...++........ ..+....+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 332 1 111111122 2233346788899999999999999887664322 156788899999999999
Q ss_pred HHHHHHHHHHhcC
Q 008550 503 EALSHYEAALRIN 515 (561)
Q Consensus 503 ~A~~~~~~al~~~ 515 (561)
+|...+..++.+.
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=6.3e-15 Score=123.84 Aligned_cols=392 Identities=12% Similarity=0.045 Sum_probs=257.8
Q ss_pred HHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchh
Q 008550 6 EQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSR 85 (561)
Q Consensus 6 ~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 85 (561)
.-+..++...+|..||.+...-....+. ....+-.+|.+|+...+|..|..+|++.-...|...
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~--------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-------- 78 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPR--------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-------- 78 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--------
Confidence 3467788999999999877666554322 223778899999999999999999999988875433
Q ss_pred hhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCccc-chhHHHHHHHHHHhcCChhhHHHHH
Q 008550 86 SSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKAR-NLQMSLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 164 (561)
..++..|..+.+.+.+.+|+.++..+...+. .....-+-+-+....+++..+....
T Consensus 79 -----------------------qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 79 -----------------------QYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV 135 (459)
T ss_pred -----------------------HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence 4677788999999999999998887755431 2233344455556667776666555
Q ss_pred HHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008550 165 KECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR 244 (561)
Q Consensus 165 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 244 (561)
++.-.. +...... ..|.+.++.|++++|++-|+.+++.
T Consensus 136 eQlp~e--n~Ad~~i----------------------------------------n~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 136 EQLPSE--NEADGQI----------------------------------------NLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HhccCC--Cccchhc----------------------------------------cchheeeccccHHHHHHHHHHHHhh
Confidence 543211 1111111 1277888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CCCC-------------------------hHHHHHHHHHHHh
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYI-------------------------MTYMDEYAMLLKV 295 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~-------------------------~~~~~~l~~~~~~ 295 (561)
..-++-+-+.++.++++.|+++.|+++...+++. .|.. .+++...+-++++
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 8888999999999999999999999988777653 3322 2345566778889
Q ss_pred cCCHhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 296 KCDYSKLSKLVHDLLSIDP--SRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
.++++.|.+.+..+-.... -+|..+.+++..-..+++.....-+.-.+.++|-.++.+.++-.+|++..-++.|...+
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 9999999877655433222 23667777777666688888888899999999988889999999999988888887765
Q ss_pred HHhHHhCCCh------HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC----ChHHHHHHHH
Q 008550 374 RGAQELRPDL------RSYQGLVHSY-LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS----GREKAKKFYE 442 (561)
Q Consensus 374 ~~~~~~~~~~------~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~~~A~~~~~ 442 (561)
-. +|+. +-.+.+-..+ ...-..++|.+-+...-...-+. ....-..+...... ....|++.|+
T Consensus 334 AE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~k--LRklAi~vQe~r~~~dd~a~R~ai~~Yd 407 (459)
T KOG4340|consen 334 AE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEK--LRKLAIQVQEARHNRDDEAIRKAVNEYD 407 (459)
T ss_pred hh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 43 3442 1223333333 23445666666555443321110 01111111111101 1133444445
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH
Q 008550 443 SALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSL 487 (561)
Q Consensus 443 ~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 487 (561)
+++++. ..+....+++++...+|..+.+.|.+..+...++++
T Consensus 408 ~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 408 ETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 544432 344555666666666666666666666665554433
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.3e-14 Score=131.70 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=260.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCC
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGE 123 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~ 123 (561)
..++.--..+.+.|+|++|++.-.+++...| ++.++......|+++.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-------------------------------dd~~a~~cKvValIq~~k 61 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-------------------------------DDEDAIRCKVVALIQLDK 61 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-------------------------------CcHhhHhhhHhhhhhhhH
Confidence 3455555677889999999999999999876 444577788899999999
Q ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 124 ~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
|++|+...+.-..........+..+.|.++.+..++|+.+++- .++.+...
T Consensus 62 y~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~---~~~~~~~l-------------------------- 112 (652)
T KOG2376|consen 62 YEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKG---LDRLDDKL-------------------------- 112 (652)
T ss_pred HHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhc---ccccchHH--------------------------
Confidence 9999987776432222233347899999999999999999992 23322111
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC-C
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY-I 282 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~ 282 (561)
..+.|.++++.|+|++|..+|+.+.+.+.++.+............. ..+ . ..+.+...|. .
T Consensus 113 --------------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~--l~~-~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 113 --------------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA--LQV-Q-LLQSVPEVPEDS 174 (652)
T ss_pred --------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh--hhH-H-HHHhccCCCcch
Confidence 1234999999999999999999999887776655544333222111 111 1 3334444454 5
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC--------CCC-------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID--------PSR-------PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~-------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
.+.+++.+.++...|+|.+|++.+++++++. .++ ..+...++.++.. |+..+|...|...++.+
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 6789999999999999999999999994321 111 1256778888888 99999999999999999
Q ss_pred CCChhHHHHHHHHHHhcC---Ch-h-HHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 347 ERHIPGYIMKGNLLLSMK---RP-E-AAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~---~~-~-~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|.+........+-+.... ++ + .++..++......++. ..+.+.+...+..+..+.+.+.....-
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 887654333222222111 11 1 1222232222222211 235666777777777777766665555
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH--------hh
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALALAELHVIEGRNGDAVSLLERYL--------KD 481 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~ 481 (561)
...|................ ..+.+|.+.+....+.+|.+ ..+.+.++.+...+|+++.|++.+.... +.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~-~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVRE-KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHH-HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 55554433333444444444 46788999999999989987 5678889999999999999999999443 33
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 482 WADDSLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 482 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
...+.+-..+-..+...++...|...+..++.
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 33333334444456666665555555555554
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=2.1e-14 Score=123.68 Aligned_cols=377 Identities=15% Similarity=0.075 Sum_probs=259.5
Q ss_pred HhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHH
Q 008550 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEM 131 (561)
Q Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l 131 (561)
-+....+|..|+..++-....+. -.+..+...+|.|+..+|+|++|+..+
T Consensus 31 dfls~rDytGAislLefk~~~~~------------------------------EEE~~~~lWia~C~fhLgdY~~Al~~Y 80 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR------------------------------EEEDSLQLWIAHCYFHLGDYEEALNVY 80 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch------------------------------hhhHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45667899999999888775531 122457888999999999999999999
Q ss_pred hcCCC-cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 132 EGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 132 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+.+.. +..+.+.+..++.+++-.|.|.+|...-.++ |+++-....+..+
T Consensus 81 ~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhl-------------------------- 130 (557)
T KOG3785|consen 81 TFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHL-------------------------- 130 (557)
T ss_pred HHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHH--------------------------
Confidence 98643 3556788999999999999999998766554 5555444333222
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
..+.++-++-.. |.+-+. +..+-...+|.+++..-.|.+|+..|.+++..+|+....-..++
T Consensus 131 --------------ahklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A 192 (557)
T KOG3785|consen 131 --------------AHKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA 192 (557)
T ss_pred --------------HHHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence 223333333222 222222 22345567788888888899999999999999999988888999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCHhHH----------------HHHHH----------H
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGA----------------LSYAE----------K 341 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A----------------~~~~~----------~ 341 (561)
.||.++.-++-+.+++.-.++..|+++.+....+....+ |+..++ ...++ .
T Consensus 193 LCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEg 272 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEG 272 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCcc
Confidence 999999999999999999999999998887776655443 332211 11111 1
Q ss_pred HHhccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHH---HHHC
Q 008550 342 SIRIDER----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREA---MKAM 413 (561)
Q Consensus 342 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~---~~~~ 413 (561)
+++.-|. -|++..++...|.+.++..+|+...+. ++|..+- |...|.+....|+--...+.++.+ +.+-
T Consensus 273 ALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 273 ALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 1222221 245677788888888888888877665 4666543 666677776666544443333332 2222
Q ss_pred C------CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--
Q 008550 414 P------QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-- 485 (561)
Q Consensus 414 p------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 485 (561)
. +...-...++.+++-. .++++.+.++...-....++....++++..+...|++.+|.+.|-+.-...-.+
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~-~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLS-FQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cccccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 1 2233445566666665 778888888777666666777788889999999999999998887654433222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
.....+|+||...|.++-|-..+-+
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHh
Confidence 4567789999999999888776644
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.75 E-value=5e-16 Score=146.45 Aligned_cols=242 Identities=17% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 245 FPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 245 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|.-..+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+....
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555666677888888888888888888888876 22222333335555555555555555555554321000
Q ss_pred HHHHHHHHHHHHhcCHhHHHHHHHHHH-hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-----h----HHH
Q 008550 317 PEVFVALSVLWERKDERGALSYAEKSI-RIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-----L----RSY 386 (561)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~----~~~ 386 (561)
. ..+|.-..++.++|.+|...|++++|..++++++++... . ..+
T Consensus 275 --------------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 275 --------------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred --------------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 0 001122234455555555555555555555555544211 1 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--------CC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFYESALRLE--------PG 450 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------p~ 450 (561)
..++.++...+++++|..++++++++. |.-+....++|.++..+ |++++|.+.|++++... +.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~-gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM-GKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhcccCcChh
Confidence 555666666666666666666655432 12245566666666666 66666666666666542 11
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----CC---h-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKDW----AD---D-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~---~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
....+..+|..+.+.+++.+|...|..+..+. |+ . ..+.+||.+|..+|++++|.++-++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 23355666666777777776666666665543 21 1 5667777777777777777777777663
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.75 E-value=1.4e-14 Score=138.79 Aligned_cols=294 Identities=14% Similarity=0.119 Sum_probs=230.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
.+.++.++...|++++|++.+++.....++...+.-..|.++..+|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 34558899999999999999999999899999999999999999999999999999999999999999999988874433
Q ss_pred -----CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh-HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 008550 298 -----DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAV 370 (561)
Q Consensus 298 -----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 370 (561)
..+....+|++.....|....+.. +...+.. ..+. .+..++...+.. .-|..+..+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 567778889988888887643322 2222223 3444 344444555433 34556666666665444333333
Q ss_pred HHHHHhHHh----------------CCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 371 IAFRGAQEL----------------RPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 371 ~~~~~~~~~----------------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
.++...... .|.. .+++.++..|...|++++|+.+++++++..|..++.+...|.++... |
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~-G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA-G 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC-C
Confidence 333332211 1222 24678899999999999999999999999999999999999999998 9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHH--HHHHHHHHHcCCHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLH--VKLAQVFAATNMLQ 502 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~--~~la~~~~~~g~~~ 502 (561)
++.+|..+++.+-.+++.+-.+-...+..+.+.|+.++|.+.+....+.+.++ -.| ...|.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999998888889999999999999999999887655221 234 55699999999999
Q ss_pred HHHHHHHHHHhcC
Q 008550 503 EALSHYEAALRIN 515 (561)
Q Consensus 503 ~A~~~~~~al~~~ 515 (561)
.|++.|..+.+..
T Consensus 323 ~ALk~~~~v~k~f 335 (517)
T PF12569_consen 323 LALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887663
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.74 E-value=1e-13 Score=121.94 Aligned_cols=292 Identities=17% Similarity=0.095 Sum_probs=232.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 297 (561)
...|..-+..|+|.+|.....+.-+..+...-.+..-+.+..+.|+++.|-.++.++-+..+++ .......+.++...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 3447788889999999999999877777766677777889999999999999999999985544 466788899999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhH---HHHHHH--HHHhcCC---hhH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPG---YIMKGN--LLLSMKR---PEA 368 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~--~~~~~~~---~~~ 368 (561)
+++.|..-..++.+..|.++++......+|.. |++.....++.+..+..--+..- +-..+. ++.+.++ .+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999 99999999998887654332211 111111 1112222 222
Q ss_pred HHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 369 AVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 369 A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
-..+++..-..-..+ +....++.-+...|+.++|.++.+.+++..-+.. ....++.+ . .++...=++..++.++.
T Consensus 248 L~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~-~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 248 LKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--R-PGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--C-CCCchHHHHHHHHHHHh
Confidence 223444432222222 3456778888999999999999999998765433 33333333 2 38889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 448 EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 448 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.|+++..+..+|.++.+.+.+.+|..+|+.+++..|+...+..+|.++.++|+..+|.+.++.++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999854
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.74 E-value=1.1e-15 Score=144.13 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHh-cCHhHHHHHHHHHHhc--------cCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC-----CCh
Q 008550 318 EVFVALSVLWER-KDERGALSYAEKSIRI--------DERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR-----PDL 383 (561)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~ 383 (561)
.+...++..|.. |++++|+..++.++.. .|.-......+|.+|...+++.+|+..|++++.+. +++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444 5555555555555444 22223334468999999999999999999998873 233
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC---
Q 008550 384 ----RSYQGLVHSYLQFSKVKEALYAAREAMKAM--------PQSAKALKLVGDVHASNASGREKAKKFYESALRLE--- 448 (561)
Q Consensus 384 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--- 448 (561)
.++.+|+.+|...|++++|..++++++++. |.-+..+..++.++..+ +++++|..++++++++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~-~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM-NEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHhh
Confidence 248899999999999999999999998754 22356778888899988 99999999999998752
Q ss_pred --CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 449 --PG---YLGAALALAELHVIEGRNGDAVSLLERYLKDWAD---------DSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 449 --p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+. -+..+.++|.+|..+|++++|.+++++++..... ...+..+|..|.+.+++.+|...|.++..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22 3567899999999999999999999999987521 157789999999999999999999988776
Q ss_pred -------CCccHHHHHHHHHHHHhccC
Q 008550 515 -------NSQNEAAKKGLERLEKQMKG 534 (561)
Q Consensus 515 -------~p~~~~~~~~l~~l~~~~~~ 534 (561)
.|+-...+.+|+.++..+|+
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 35556788999999999873
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.74 E-value=2.3e-14 Score=137.20 Aligned_cols=296 Identities=15% Similarity=0.096 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
++.+..+.++...|++++|+..|+..... .+...+.-..|.++.+.|++++|...|..+++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 57788889999999999999999985443 66777888999999999999999999999999999999999888776511
Q ss_pred c-----ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 188 P-----KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYK-GGLELFAELLQRFPNNIHILLEMAKVDAI 261 (561)
Q Consensus 188 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 261 (561)
. .................|.... +......+..| ..|. .+..++...+.. .-|.++..+-.+|..
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~-~~rl~L~~~~g------~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDA-PRRLPLDFLEG------DEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKD 155 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccc-hhHhhcccCCH------HHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcC
Confidence 1 1222222222222222221110 00000000011 1222 223333344333 234444444444443
Q ss_pred hCCHHHHHHHHHHHHhh---------------CCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 262 IGKNDEAILNFEKVRSI---------------DPYI--MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~---------------~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
..+..-....+...... .|.. .++++.++..|...|++++|+.++++++...|..++.+...|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Ka 235 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKA 235 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 32222222222222211 1111 246688899999999999999999999999999999999999
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC--CCh-----H-HHH--HHHHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR--PDL-----R-SYQ--GLVHSY 393 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~-----~-~~~--~l~~~~ 393 (561)
.++.. |++.+|...++.+..+++.+-.+....+..+++.|++++|...+......+ |.. . .|+ ..|.+|
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999999988888888999999999999998888775544 211 1 344 568899
Q ss_pred HhcCCHHHHHHHHHHHHHHC
Q 008550 394 LQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~ 413 (561)
.+.|++..|++.|..+.+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 99999999999988887654
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=8.5e-16 Score=136.38 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=130.0
Q ss_pred chhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHH
Q 008550 38 SPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASC 117 (561)
Q Consensus 38 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 117 (561)
..+..+..++.+|..++..|+|++|+..|++++..+|.++ ....+++.+|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~----------------------------~~~~a~~~la~~ 79 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP----------------------------YAEQAQLDLAYA 79 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch----------------------------hHHHHHHHHHHH
Confidence 4567788999999999999999999999999999987554 223578999999
Q ss_pred HHhcCCHHHHHHHHhcC-CCcccchh---HHHHHHHHHHhc--------CChhhHHHHHHHHHhcCCCcHHHHHHHHHHc
Q 008550 118 HFALGETKAAIVEMEGI-PSKARNLQ---MSLLMAKLYRNS--------RHNRGAVACYKECLRHCPFFIEAITALAELG 185 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~-~~~~~~~~---~~~~l~~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (561)
+...|++++|+..++.+ ...|+++. +++.+|.++... |++++|+..|++++..+|++..+...+..+.
T Consensus 80 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~ 159 (235)
T TIGR03302 80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD 159 (235)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH
Confidence 99999999999999985 44465554 789999999876 8899999999999999999877665443221
Q ss_pred CCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHh
Q 008550 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAII 262 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~ 262 (561)
...... -...+..|..++..|++.+|+..++++++..|++ +.+++.+|.++...
T Consensus 160 ~~~~~~-----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l 216 (235)
T TIGR03302 160 YLRNRL-----------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL 216 (235)
T ss_pred HHHHHH-----------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence 100000 0001122444555555555555555555554432 34555555555555
Q ss_pred CCHHHHHHHHHHHHhh
Q 008550 263 GKNDEAILNFEKVRSI 278 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~ 278 (561)
|++++|..+++.+...
T Consensus 217 g~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 217 GLKDLAQDAAAVLGAN 232 (235)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5555555555444433
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=8.4e-13 Score=116.24 Aligned_cols=292 Identities=15% Similarity=0.049 Sum_probs=219.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI 226 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (561)
-|..-...|+|.+|.....+.-+..+...-++ ..-+...-
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~----------------------------------------l~aA~AA~ 129 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAY----------------------------------------LLAAEAAQ 129 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHH----------------------------------------HHHHHHHH
Confidence 34455567788888887777655554432222 22267777
Q ss_pred HccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
+.|+++.|-.++.++-+..+ +...+...++++....|++..|.....++.+..|.++.++.....+|...|++.+...+
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHH
Confidence 78888888888888877733 33566777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCHH-H-----HHHHHHHHHh---cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 306 VHDLLSIDPSRPE-V-----FVALSVLWER---KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 306 ~~~~~~~~~~~~~-~-----~~~l~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++-+..--+.+ . +...|.+-.. +..+.-..+++..-..-..++.....++.-+..+|+.++|.+..+.+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8777765433322 1 1111111111 22223333555544444566888888999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
++..-+...... .-....+++..=++..++.+...|+++..+..+|..+.+. +.|.+|..+|+.+++..|+ ...+.
T Consensus 290 Lk~~~D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-~~w~kA~~~leaAl~~~~s-~~~~~ 365 (400)
T COG3071 290 LKRQWDPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN-KLWGKASEALEAALKLRPS-ASDYA 365 (400)
T ss_pred HHhccChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCC-hhhHH
Confidence 998766652211 2235678899999999999999999999999999999998 9999999999999999876 57788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.+|.++.+.|+..+|....+.++...
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999988543
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=1.2e-14 Score=128.99 Aligned_cols=185 Identities=18% Similarity=0.107 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChH---H
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMT---Y 285 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ 285 (561)
......++..|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34444566668888888888888888888888888765 56788888888888888888888888888887765 5
Q ss_pred HHHHHHHHHhc--------CCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHH
Q 008550 286 MDEYAMLLKVK--------CDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 286 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
++.+|.++... |++++|+..+++++..+|++...+..+..+... +.. ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL-----------------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 77777777665 455566666666666665554443222211111 000 0112234
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAM 413 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 413 (561)
|.++...|++.+|+..+++++...|+. .+++.+|.++...|++++|..+++.+...+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 444555555555555555555544432 234455555555555555555444444433
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=5.1e-11 Score=111.11 Aligned_cols=366 Identities=15% Similarity=0.130 Sum_probs=255.1
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CcHHHHHHHHH---------HcCC------cc---cHhHHhhccc
Q 008550 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCP---FFIEAITALAE---------LGAT------PK---DIISLFAQTP 199 (561)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l~~---------~~~~------~~---~~~~~~~~~~ 199 (561)
...|..||..|.+.|.+++|...|++++..-- +...++...+. +... .+ +.+-.+..+.
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 34678899999999999999999999987543 22222211111 0100 00 0111111111
Q ss_pred cccCCC---------CCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHhCC
Q 008550 200 NRSGRA---------PFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FPNN-----IHILLEMAKVDAIIGK 264 (561)
Q Consensus 200 ~~~~~~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~~~ 264 (561)
...... ..++.....|. -.+-+..|+..+-+..|.++++. +|.- ...|..+|..|...|+
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~-----kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWH-----KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHH-----hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc
Confidence 111111 12222333444 34555678899999999999874 5543 4688899999999999
Q ss_pred HHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC------------------CHHHHHH
Q 008550 265 NDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS------------------RPEVFVA 322 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------~~~~~~~ 322 (561)
.+.|...|+++.+..-.. ..+|...|..-....+++.|..+.+++...... +..+|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 999999999999875433 467888888888999999999999988754222 1346778
Q ss_pred HHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHH---HHHHHHHh
Q 008550 323 LSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQ---GLVHSYLQ 395 (561)
Q Consensus 323 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~---~l~~~~~~ 395 (561)
++.+... |-++.....|++.+.+.--.|....+.|..+....-++++.+.|++.+.+.+-. +.|. .....-+.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 8888888 999999999999999998899999999999999999999999999999986543 3343 23333344
Q ss_pred cCCHHHHHHHHHHHHHHCCCC-HH-HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCh
Q 008550 396 FSKVKEALYAAREAMKAMPQS-AK-ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI-----EGRN 468 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~-~~-~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-----~g~~ 468 (561)
....+.|..+|+++++..|.. .. .+...+..-... |-...|+..|+++...-+. .-.+.+-.+|.+ -| .
T Consensus 563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~-GLar~amsiyerat~~v~~--a~~l~myni~I~kaae~yG-v 638 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH-GLARHAMSIYERATSAVKE--AQRLDMYNIYIKKAAEIYG-V 638 (835)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhC-C
Confidence 558899999999999988732 22 344455555555 8888999999997654332 222223333322 12 2
Q ss_pred HHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 469 GDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
..-..+|+++++.-|+. ......+..-.++|..+.|...|..+-++.
T Consensus 639 ~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 639 PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 34567888888888876 577888888899999999999998887764
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=3.2e-15 Score=119.63 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=92.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..++++++.+|++ +..+|.++... |++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4566777776653 44567777776 7777777777777777777777777777777777777777777777777777
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
++ ..++.+|.++...|++++|+..|++++++.|+++..+..++.+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 66 77777777777777777788888888777787777777777665543
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=6.5e-14 Score=115.22 Aligned_cols=182 Identities=17% Similarity=0.115 Sum_probs=161.0
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+..|..+-....+....|+.+-|..+++++....|++..+....|..+...|++++|+++|+..++.+|.+...+....-
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 44555544456777888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcC---Chh
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMK---RPE 367 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 367 (561)
+...+|+.-+|++.+...++.++.|+++|..++.+|.. |++++|.-++++++-+.|.++..+..+|.+++..| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999999 99999999999999999999999999999988776 566
Q ss_pred HHHHHHHHhHHhCCCh-HHHHHHHHHH
Q 008550 368 AAVIAFRGAQELRPDL-RSYQGLVHSY 393 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-~~~~~l~~~~ 393 (561)
-|.++|.++++++|.+ .+++.+..+.
T Consensus 209 ~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 209 LARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 7889999999998854 6666554443
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.65 E-value=5e-14 Score=140.91 Aligned_cols=254 Identities=10% Similarity=0.039 Sum_probs=154.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..+..+...+++++|+.+++..++.+|+....++.+|.++.+.+++.++... .++...+.+ .++
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~--------------~~~ 99 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN--------------LKW 99 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc--------------cch
Confidence 3355555555555555555555555555555555555555555554444433 333332222 122
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
.++.++-..+...+.+..+++.+|.||.. |+.++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++.
T Consensus 100 -~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 100 -AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred -hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 22333333333355555788888888888 8888888888888888888888888888888888 88888888888865
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHH--------------------HHHHHHhhhcCChHHHH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALK--------------------LVGDVHASNASGREKAK 438 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~~~~~~~A~ 438 (561)
. +...+++.++..++.+.+..+|++...+. -+-..|... +++++++
T Consensus 178 ~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~-~~~~~~i 243 (906)
T PRK14720 178 R-------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL-EDWDEVI 243 (906)
T ss_pred H-------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh-hhhhHHH
Confidence 4 55566777777778887777777654432 222444444 6666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 439 KFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 439 ~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+++.+++.+|.+..+...++.+|. +.|.. ...++..++.. .+-.....+..|+..|++-+..+|.+
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s----------~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS----------DIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh----------ccccCCccHHHHHHHHHHHeeecCCC
Confidence 6666666666666666666666665 33322 33333333221 11111134466666666666666654
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=6.3e-15 Score=117.99 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 008550 235 LELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 314 (561)
...|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677788877764 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 315 SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 315 ~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+++.+++.+|.++.. |++++|+..|++++...|+++..+..++.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 888888888888888 888888888888888888888888777766543
No 99
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=2.3e-11 Score=113.30 Aligned_cols=400 Identities=13% Similarity=0.126 Sum_probs=237.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhc-CCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEG-IPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG 185 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 185 (561)
.++......++.+|+...-...|.+ +..- ..+..+|-..-......|-++-++..|++.++..|...+-+.....
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~-- 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA-- 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH--
Confidence 4677788888899998888888876 2222 3455677777777778888999999999999999987665544322
Q ss_pred CCcccHhHHhhccccccCCCCC----CCCChhhHH-----------------------------------HHHHHHHHHH
Q 008550 186 ATPKDIISLFAQTPNRSGRAPF----DHLDSSRWL-----------------------------------HRYVEAQCCI 226 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----------------------------------~~~~~a~~~~ 226 (561)
..++..++.+.......+... .......|. ....+|..|+
T Consensus 181 -~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 -KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred -hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 222332222222222111000 000011111 1122366677
Q ss_pred HccCHHHHHHHHHHHHHhCC---CCHHHHHHH-----HHHHHHhC-------------CHHHHHHHHHHHH---------
Q 008550 227 ASNDYKGGLELFAELLQRFP---NNIHILLEM-----AKVDAIIG-------------KNDEAILNFEKVR--------- 276 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l-----a~~~~~~~-------------~~~~A~~~~~~~~--------- 276 (561)
+.|.+++|..+|++++..-- +...++-.. ..+...++ +.+-.+..|+..+
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 77777777777777765422 111111111 11111111 1222233333332
Q ss_pred ---hhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 277 ---SIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 277 ---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
..+|.+.+-|... +-...|+..+-+..|.+++. .+|.. ...|..+|.+|.. |+.+.|...|+++.+..
T Consensus 340 VlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 2344444444433 33345666667777766654 34433 3467777777777 88888888888877654
Q ss_pred CCC----hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-------------------hHHHHHHHHHHHhcCCHHHHH
Q 008550 347 ERH----IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-------------------LRSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 347 ~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~ 403 (561)
-.. ..+|...|..-++..+++.|+++.+.+...... ...|...+......|-++...
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 322 356777777777777788887777776543211 013556666667777777777
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHH---HHcCChHHHHHHHHHH
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLGAALALAELH---VIEGRNGDAVSLLERY 478 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~la~~~---~~~g~~~~A~~~~~~~ 478 (561)
..|++++.+.--.|....+.|..+... .-++++.+.|++.+.+. |.-.++|...-..+ +.....+.|..+|+++
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 777777777777777777777777776 77777888887777764 33344554332222 2223567777888888
Q ss_pred HhhCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 479 LKDWADD---SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 479 ~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..|.. .++...+.+-..-|--..|+..|++|-..
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 8777643 56667777777777777777777776554
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.64 E-value=4.3e-12 Score=136.29 Aligned_cols=298 Identities=15% Similarity=0.066 Sum_probs=215.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-----HHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPN---------NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYM 286 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~ 286 (561)
.+.++...|++++|...+..+....+. ...+...++.++...|++++|...+++++...|... .+.
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 366777889999999998887664221 124445577888889999999999999988544432 345
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC--------Chh
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDER--------HIP 351 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~--------~~~ 351 (561)
..+|.++...|++++|...+++++...... ..++..++.++.. |+++.|...+++++..... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 677888889999999999999888653322 2355667778777 9999999999988875221 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCC----Ch--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHH-
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRP----DL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALK- 421 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~- 421 (561)
.+..+|.++...|++++|...+.+++.... .. ..+..++.++...|++++|...+.++....+.. .....
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 355678888999999999999999877632 11 236678889999999999999999887653322 11111
Q ss_pred ---HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----h--HH
Q 008550 422 ---LVGDVHASNASGREKAKKFYESALRLEPGYLG----AALALAELHVIEGRNGDAVSLLERYLKDWAD-----D--SL 487 (561)
Q Consensus 422 ---~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~--~~ 487 (561)
.....+... |+.+.|..++.......+.... .+..++.++...|++++|...+++++..... . .+
T Consensus 655 ~~~~~~~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMT-GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 112333344 8888888887775543222221 2457889999999999999999999875321 1 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
+..+|.++...|+.++|...+.+++++.....
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 78899999999999999999999999875543
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.64 E-value=5.9e-14 Score=123.37 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI----HILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMT 284 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 284 (561)
.+.+-+.|.-+++.|++...+.+|+.+++...++. .+|.++|.+|+.+++|++|+++-..-+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 44556679999999999999999999999877764 56778999999999999999875433322 122234
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCC------CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDP------SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
..-++|..+...|.|++|+.++.+-+.... ....+++++|.+|.. |+.-.- ..|.....+..-
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~---------~~pee~g~f~~e- 166 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGL---------EAPEEKGAFNAE- 166 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCC---------CChhhcccccHH-
Confidence 556788888999999999888877654322 124567777777765 432100 000000000000
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC------CHHHHHHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKALKLVG 424 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~ 424 (561)
-...++.|.++|..-+++.... +++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|
T Consensus 167 ----v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlg 242 (639)
T KOG1130|consen 167 ----VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLG 242 (639)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccc
Confidence 0011233444444444432221 34556677777777777777666554443322 134667778
Q ss_pred HHHhhhcCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hHHHHHH
Q 008550 425 DVHASNASGREKAKKFYESALRL----EPGY--LGAALALAELHVIEGRNGDAVSLLERYLKDWAD-------DSLHVKL 491 (561)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~----~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l 491 (561)
.++.-. |+++.|+++|++.+.+ .... ....+.+|..|.-..++.+|+.++.+-+.+... -.+++.+
T Consensus 243 N~hifl-g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 243 NCHIFL-GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred hhhhhh-cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 888777 8888888888776543 2222 345678889999889999999998887665431 2688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHhccCCC
Q 008550 492 AQVFAATNMLQEALSHYEAALRI-----NSQ-NEAAKKGLERLEKQMKGVD 536 (561)
Q Consensus 492 a~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~l~~l~~~~~~~~ 536 (561)
|..+-.+|..++|+.+.++.+++ +|. ...+..++..+...+|..+
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 99999999999999888777665 232 3457778888887776433
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=5.5e-14 Score=118.85 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHH
Q 008550 396 FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELH-VIEGR--NGDAV 472 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~g~--~~~A~ 472 (561)
.++.++++..+++++..+|+++..|..+|.++... |++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~-g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR-NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 55667777777888888888888888888888777 8888888888888888888888888887764 56666 47788
Q ss_pred HHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 473 SLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 473 ~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
..++++++.+|++ .+++.+|..+...|++++|+.+|++++++.|.+..-...+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8888888888766 7778888888888888888888888888777655444333
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2.3e-12 Score=106.31 Aligned_cols=183 Identities=18% Similarity=0.160 Sum_probs=142.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHH
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKG 357 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 357 (561)
.|+....+.....+....|+.+-|..+++++....|.+..+....|..+.. |.+++|+++|+..+.-+|.+..++...-
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 344445555666677778888888888888888888888888888888877 8888888888888888888888887777
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC--Ch
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GR 434 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~ 434 (561)
.+...+|+.-+|++.+...++..+.+ ++|..++.+|...|++++|.-++++++-..|.++..+..+|.+++..+| ++
T Consensus 128 Ailka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 128 AILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77778888888888888888887776 6788888888888888888888888888888888888888888777622 34
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 435 EKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
.-|.++|.++++++|.+..+++.+..+
T Consensus 208 ~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 668888888888888776666665444
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=1.2e-11 Score=132.83 Aligned_cols=340 Identities=12% Similarity=0.032 Sum_probs=244.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc----HHHHHHHHH
Q 008550 110 VKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF----IEAITALAE 183 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~l~~ 183 (561)
.....+......|++..+...+..++.. ..++......+.++...|++++|...+.++....+.. ....
T Consensus 376 ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~----- 450 (903)
T PRK04841 376 ILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL----- 450 (903)
T ss_pred HHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH-----
Confidence 4445666777788888888888776432 3445556677888888899999998888876543221 0000
Q ss_pred HcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q 008550 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI-----HILLEMAKV 258 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~ 258 (561)
........+.++...|++++|...+++++...|... .+...+|.+
T Consensus 451 ------------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 451 ------------------------------QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 011112347788889999999999999988544322 345678889
Q ss_pred HHHhCCHHHHHHHHHHHHhhCCCC------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--------CHHHHHHHH
Q 008550 259 DAIIGKNDEAILNFEKVRSIDPYI------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--------RPEVFVALS 324 (561)
Q Consensus 259 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~ 324 (561)
+...|++++|...+.+++...... ..++..++.++...|++++|...+++++..... ....+..+|
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998753321 235667889999999999999999988775221 123455677
Q ss_pred HHHHh-cCHhHHHHHHHHHHhccCC-----ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHH-----HHHH
Q 008550 325 VLWER-KDERGALSYAEKSIRIDER-----HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSY-----QGLV 390 (561)
Q Consensus 325 ~~~~~-~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----~~l~ 390 (561)
.++.. |++++|...+.+++..... ....+..+|.++...|++++|...+.++....+.. ..+ ....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 77777 9999999999998875332 23456668899999999999999999987763321 111 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCC------CCHHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASNASGREKAKKFYESALRLEP------GYLGAALALAE 460 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~la~ 460 (561)
..+...|+.+.|...+.......+... ..+..++.++... |++++|...+++++.... ....++..+|.
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 445568899999998877554322222 1246788888888 999999999999987532 12346778999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 461 LHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++...|+.++|...+.++++.....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987554
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.60 E-value=5.6e-13 Score=133.53 Aligned_cols=263 Identities=12% Similarity=0.082 Sum_probs=166.4
Q ss_pred ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHH
Q 008550 138 ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLH 217 (561)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (561)
|.+..++..++..+...|++++|+..++..+...|+...+++.++-++...++...+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------------------
Confidence 444455555555555555555555555555555555555555544444333332111100
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
..+.......++ .+++.+...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++..+|..+...
T Consensus 88 --~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 88 --NLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 001222222344 5666666677778888889999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++|+.++.+++.. +.. +++..+..++.+.+..+|.+.+.+..+-......-.+..+.
T Consensus 164 dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~------ 223 (906)
T PRK14720 164 DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLV------ 223 (906)
T ss_pred hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhH------
Confidence 999999999998875 444 88889999999999998887766544322221111111111
Q ss_pred HHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh-------------------cCChHHH
Q 008550 377 QELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN-------------------ASGREKA 437 (561)
Q Consensus 377 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------~~~~~~A 437 (561)
..+.-+-..|...+++++++.+++.+++.+|.+..+...++.+|... ...+..+
T Consensus 224 -------~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~ 296 (906)
T PRK14720 224 -------GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDC 296 (906)
T ss_pred -------HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHH
Confidence 12333444555556666666666666666666666666666665533 1344667
Q ss_pred HHHHHHHHHhCCCC
Q 008550 438 KKFYESALRLEPGY 451 (561)
Q Consensus 438 ~~~~~~a~~~~p~~ 451 (561)
+..|++-+..+|++
T Consensus 297 i~~fek~i~f~~G~ 310 (906)
T PRK14720 297 IADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHeeecCCC
Confidence 77777776666554
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.59 E-value=4.2e-13 Score=111.82 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=84.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH
Q 008550 308 DLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS 385 (561)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 385 (561)
.....+|.+..+ ..++..+.. |+-+.+..+..++...+|.+......+|...+..|++..|+..++++....|++ +.
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~ 136 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA 136 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence 333444444444 444444444 444445544444444444444444445555555555555555555555555444 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..+.-. |+++.|..++..+....+.+..+..+++.+....
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 555555555555555555555555555555555555555555554 5555555555555544444455555555555555
Q ss_pred CChHHHHHHHH
Q 008550 466 GRNGDAVSLLE 476 (561)
Q Consensus 466 g~~~~A~~~~~ 476 (561)
|++++|.....
T Consensus 216 g~~~~A~~i~~ 226 (257)
T COG5010 216 GDFREAEDIAV 226 (257)
T ss_pred CChHHHHhhcc
Confidence 55555544443
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.59 E-value=2.9e-13 Score=114.44 Aligned_cols=153 Identities=10% Similarity=0.099 Sum_probs=125.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.+..|+..|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.++...|++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
Confidence 34667888899888655543221 2211 111266778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hh-cC--HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLW-ER-KD--ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
++|+..|++++...|+++.++..+|.++ .. |+ +++|...++++++.+|+++.++..+|..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999864 55 66 58999999999999999999999999999999999999999999
Q ss_pred hHHhCCCh
Q 008550 376 AQELRPDL 383 (561)
Q Consensus 376 ~~~~~~~~ 383 (561)
+++..|..
T Consensus 170 aL~l~~~~ 177 (198)
T PRK10370 170 VLDLNSPR 177 (198)
T ss_pred HHhhCCCC
Confidence 99987765
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.4e-12 Score=109.95 Aligned_cols=281 Identities=14% Similarity=0.049 Sum_probs=215.8
Q ss_pred HHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHh
Q 008550 117 CHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (561)
.+++..+|.+|++++..- ...|++...+..+|.+|....++..|..+|++.-...|......
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr----------------- 81 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR----------------- 81 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH-----------------
Confidence 347888999999999884 55588888999999999999999999999999999998643332
Q ss_pred hccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..|..++..+.+.+|+.+...+.....-...+...-+-+.+..+++..+....++.
T Consensus 82 -----------------------lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl 138 (459)
T KOG4340|consen 82 -----------------------LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL 138 (459)
T ss_pred -----------------------HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc
Confidence 233889999999999999988775432222344555567777888888887776654
Q ss_pred HhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----cCCC-
Q 008550 276 RSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----DERH- 349 (561)
Q Consensus 276 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----~~~~- 349 (561)
-. .+........|-+.++.|+++.|.+-|+.+++...-.|-+-+.++.+..+ +++..|+++....+.. .|..
T Consensus 139 p~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 139 PS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred cC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 21 24567888999999999999999999999999999999999999999999 9999999998877764 3321
Q ss_pred ------------------------hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh--H-HHHHHHHHHHhcCCHHHH
Q 008550 350 ------------------------IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL--R-SYQGLVHSYLQFSKVKEA 402 (561)
Q Consensus 350 ------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~l~~~~~~~~~~~~A 402 (561)
.+++...+.++++.|+++.|.+.+....-..... + .+.+++.. -..+++.+.
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 1335667788899999999887776543222211 2 35565544 345667778
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 403 LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 403 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
..-+.-.+.++|-.++.+.++-.++.+. .-++-|...+
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKN-eyf~lAADvL 333 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKN-EYFDLAADVL 333 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhh-HHHhHHHHHH
Confidence 8888888899998888898888888886 7777776654
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.57 E-value=7.6e-13 Score=110.34 Aligned_cols=178 Identities=14% Similarity=0.060 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|++..|+..++++
T Consensus 48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344566666666778888888 888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHH
Q 008550 310 LSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQ 387 (561)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 387 (561)
....|+++++|..+|.+|.+ |+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+ .+..
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHH
Confidence 88888888888888888888 888888888888888888888888888888888888888888888887776644 5677
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~ 408 (561)
+++.+....|++++|..+..+
T Consensus 207 NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 207 NLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhhcCChHHHHhhccc
Confidence 888888888888888776654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=6.9e-13 Score=125.33 Aligned_cols=221 Identities=17% Similarity=0.132 Sum_probs=177.0
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|........++..+...|-...|+..|++. ..|.....||...|+..+|..+..+-++ .|.++..|..+|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 334556667888888888888888888875 5566777888888888888888888887 6777888888887
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 403 (561)
+... .-|++|.++.+.. +..+...+|......++|.++.++++..++++|-. ..|+.+|.+..+.+++..|.
T Consensus 466 v~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 7766 6666676666543 23456667777777888888888888888888876 66888888888888888888
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
+.|..++...|++..+|++++..|... ++..+|...++++++.+-.+..+|.+.-.+....|.+++|++.+.+.+...
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888 888888888888888887778888888888888888888888888877654
No 111
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=2.3e-13 Score=109.19 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=105.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
..+++++..+|++......+|..+... |++++|...+++++..+|.++.++..+|.++...|++++|...+++++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778888888888888888888887 8888888888888888888888888888888888888888888888888888
Q ss_pred Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 484 DD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 484 ~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
++ ..++.+|.++...|++++|...|+++++++|++.........+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 76 7888888888888888888888888888888888766655555443
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.54 E-value=7.7e-13 Score=118.38 Aligned_cols=258 Identities=17% Similarity=0.157 Sum_probs=172.8
Q ss_pred HHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHH
Q 008550 51 DSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVE 130 (561)
Q Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 130 (561)
+.+|-.|+|..++..++ ....+ + ....+..+.+.++++.+|+++..+..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~---~---------------------------~~~~e~~~~~~Rs~iAlg~~~~vl~e 57 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS---P---------------------------ENKLERDFYQYRSYIALGQYDSVLSE 57 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST---C---------------------------HHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC---c---------------------------hhHHHHHHHHHHHHHHcCChhHHHHH
Confidence 45677899999987776 21211 1 02245778889999999999887766
Q ss_pred HhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCC
Q 008550 131 MEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 131 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+..-. +....+...++..+...++.+.++..++..+........
T Consensus 58 i~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~---------------------------------- 101 (290)
T PF04733_consen 58 IKKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESN---------------------------------- 101 (290)
T ss_dssp S-TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CH----------------------------------
T ss_pred hccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccccc----------------------------------
Confidence 65433 333455566666665545566666655554433221001
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
.......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.+.+.+..-.....+
T Consensus 102 ----~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~a 172 (290)
T PF04733_consen 102 ----EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEA 172 (290)
T ss_dssp ----HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 111223367777788888888877653 56788888888888888999888888888887776665555555
Q ss_pred HHHHhcC--CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh-
Q 008550 291 MLLKVKC--DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRP- 366 (561)
Q Consensus 291 ~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 366 (561)
++....| .+.+|..+|+++....+.++.++..++.+... |++++|...+.+++..+|+++.++.+++.+....|+.
T Consensus 173 wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 173 WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 5665555 57888888888888877888888888888888 8888888888888888888888888888888888887
Q ss_pred hHHHHHHHHhHHhCCChH
Q 008550 367 EAAVIAFRGAQELRPDLR 384 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~ 384 (561)
+.+.+++.+....+|+++
T Consensus 253 ~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 253 EAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHCHHHTTTSH
T ss_pred hHHHHHHHHHHHhCCCCh
Confidence 455667777777777764
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.54 E-value=5.5e-13 Score=125.97 Aligned_cols=219 Identities=15% Similarity=0.073 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
......++..+...|-...|+.++++. ..|-....||.. |+..+|..+..+-++ .|.++..|..+|.+..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 345678899999999999999999864 567778889999 999999999999888 6677888888877766
Q ss_pred hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
...-|++|.++.+..- ..+...+|......+++.++.+.++..++++|-....|+.+|.+..+. ++++.|.++|
T Consensus 469 d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHH
Confidence 5554555544443321 145566777778899999999999999999999999999999999998 9999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
..++.++|++.++|.+++..|.+.|+-.+|...+.++++.+-.+ .+|.+...+....|.+++|++.|.+.+.+..
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998666 8999999999999999999999999988743
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.52 E-value=7.7e-13 Score=118.41 Aligned_cols=255 Identities=17% Similarity=0.153 Sum_probs=148.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFP-NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
..+.++..|+|..++.-.+ ....+| ........+.+++..+|+++..+..... ..+....+...++..+...++.
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccch
Confidence 3677888899988887666 222333 2345667788888888888766654433 2233335555666655554555
Q ss_pred hHHHHHHHHHHhcCC--CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 008550 300 SKLSKLVHDLLSIDP--SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+.++..++..+.... .++.+....|.++.. |++++|++.+.+. .+.+.......+++..++++.|.+.++.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666655443322 223344445555655 7777777766543 44566666666777777777777777776
Q ss_pred HHhCCChHH-HHHHHHHHHhcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 377 QELRPDLRS-YQGLVHSYLQFS--KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 377 ~~~~~~~~~-~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
.+.+.+... ....+++....| .+.+|..+|++..+..|.++..++.++.++..+ |++++|...+.+++..+|++++
T Consensus 158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC-CCHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhccCCHH
Confidence 655544421 222233333333 466777777776666666666666677777766 7777777777777766777777
Q ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCh
Q 008550 454 AALALAELHVIEGRN-GDAVSLLERYLKDWADD 485 (561)
Q Consensus 454 ~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~ 485 (561)
++.+++.+....|+. +.+.+++.++....|+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666676666666666 44445555555555554
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.51 E-value=1.9e-12 Score=128.99 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
.+++.-+.......|.+++++..+|.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34445555556678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC
Q 008550 312 IDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD 382 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 382 (561)
..|+++..++.+|.++.. |++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999998544
No 116
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.8e-13 Score=113.69 Aligned_cols=116 Identities=24% Similarity=0.225 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~ 496 (561)
+-+..-|.-+.+. ++|.+|+..|.+|++++|+++..+.+.+.+|.++|.++.|++-++.++.++|.. .+|..+|.+|.
T Consensus 82 E~LK~eGN~~m~~-~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 82 ESLKNEGNKLMKN-KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3445567777776 999999999999999999999999999999999999999999999999999987 89999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccC
Q 008550 497 ATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKG 534 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 534 (561)
.+|++++|++.|+++|+++|+|...+.+|......+..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988763
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=3.3e-12 Score=127.40 Aligned_cols=137 Identities=9% Similarity=-0.050 Sum_probs=69.6
Q ss_pred hcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQG 388 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~ 388 (561)
...|.+++++..+|.+... |.+++|...++.++++.|++..++..++.++.+.+++++|+..+++++...|++ .+++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3344445555555555555 555555555555555555555555555555555555555555555555555554 33444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
+|.++...|++++|+..|++++..+|+++.++..+|.++... |+.++|...|+++++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR-GALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Confidence 555555555555555555555554454555555555555554 55555555555555443
No 118
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.49 E-value=1.7e-12 Score=114.37 Aligned_cols=285 Identities=14% Similarity=0.109 Sum_probs=148.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHH
Q 008550 147 MAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCI 226 (561)
Q Consensus 147 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (561)
-|.-+++.|+....+.+|+.+++....+...+..+ | -.+|.+|+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI---Y---------------------------------sQLGNAyf 66 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI---Y---------------------------------SQLGNAYF 66 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH---H---------------------------------HHhcchhh
Confidence 46666777788888888888877776655444332 1 11266777
Q ss_pred HccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH
Q 008550 227 ASNDYKGGLELFAELLQ------RFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP------YIMTYMDEYAMLLK 294 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~ 294 (561)
..++|.+|+++-.-=+. ..-.....--.+|..+-..|.|++|+.+..+-+.+.. ....+++++|.+|.
T Consensus 67 yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 67 YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYH 146 (639)
T ss_pred hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhh
Confidence 77777777766432221 1112234455677777778888888777766554422 12456777888777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER------HIPGYIMKGNLLLSMKRPEA 368 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~ 368 (561)
..|+.-....--+ ......++- ..++.|.++|..-+++... ...++-++|..|+-+|+|+.
T Consensus 147 akGk~~g~~~pee----~g~f~~ev~---------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 147 AKGKCTGLEAPEE----KGAFNAEVT---------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hcccccCCCChhh----cccccHHHH---------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 7665311100000 000000000 1222333333333222111 12344555666666666666
Q ss_pred HHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----C--CCHHHHHHHHHHHhhhcCChH
Q 008550 369 AVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAM----P--QSAKALKLVGDVHASNASGRE 435 (561)
Q Consensus 369 A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~~ 435 (561)
|+..-+.-+.+.... +++.++|.++.-.|+++.|+++|+..+.+. . ..+...+.+|..|.-. .+++
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll-~e~~ 292 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL-KEVQ 292 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH-HHHH
Confidence 665555544442221 345566666666666666666665544321 1 1234455566666655 6666
Q ss_pred HHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 436 KAKKFYESALRLEP------GYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 436 ~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+|+.++.+-+.+.. ....+++.+|..+...|..++|+.+.++.++.
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666655444321 12345566666666666666666665555543
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.6e-12 Score=104.19 Aligned_cols=115 Identities=18% Similarity=0.200 Sum_probs=82.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
.|++++..+|++....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|...+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChh
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDERHIP 351 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~ 351 (561)
+..++.+|.++.. |++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777777777766 7777777777777777666554
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.45 E-value=2.8e-11 Score=105.78 Aligned_cols=200 Identities=12% Similarity=0.118 Sum_probs=143.5
Q ss_pred HHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccC
Q 008550 25 CFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSA 104 (561)
Q Consensus 25 ~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 104 (561)
..+++.|.......+...+..++..|..++..|+|++|+..|++++...|..+
T Consensus 14 ~~~lsgCs~~~~~~~~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~--------------------------- 66 (243)
T PRK10866 14 SLFLAGCSGSKEEVPDNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP--------------------------- 66 (243)
T ss_pred HHHHhhcCCCCcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---------------------------
Confidence 34566665433333445677899999999999999999999999999987554
Q ss_pred CChHHHHHHHHHHHHhcCCHHHHHHHHhcC----CCcccchhHHHHHHHHHHhcC---------------C---hhhHHH
Q 008550 105 INENEVKYKIASCHFALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR---------------H---NRGAVA 162 (561)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~---------------~---~~~A~~ 162 (561)
-...+.+.+|.++.+.+++++|+..+++. +.+|..+.+++.+|.++...+ + ..+|+.
T Consensus 67 -~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 67 -YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred -HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 12346789999999999999999999883 444666778899998864443 1 357889
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 163 CYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 163 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
.|++.++..|++.-+....-.+....+ .....-+..|..|.+.|.|..|+.-++.++
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~-----------------------~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKD-----------------------RLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 999999999987654432211110000 000012233777888888888888888888
Q ss_pred HhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 243 QRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 243 ~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..|+. .+++..++..|...|..++|.......
T Consensus 203 ~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 203 RDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 887765 567788888888888888887766543
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.5e-12 Score=108.53 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
+-..|.-++..++|.+|+..|.++++.+|.++..|..+|.+|.++|.++.|++.++.++.++|....+|.++|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44558888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
++.+|+..|+++++++|++...+..|..+-..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999998777776665544
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=9.3e-12 Score=96.97 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
+..+.+|..+...|++++|...|+-+...+|.+...|+.+|.++..+ |++.+|+..|.+++.++|+++..++++|.|++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~-g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ-KHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44666666666677777777777776667777777777777776666 77777777777777777766666666666666
Q ss_pred HcCChHHHHHHHHHHHhhC
Q 008550 464 IEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~ 482 (561)
..|+.+.|.+.|+.++...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666654
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.42 E-value=9.2e-12 Score=97.00 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGN 358 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 358 (561)
++..+..+.+|..+...|++++|...|+-+...+|.++..|+.+|.++.. |++.+|+..|.+++.++|+++..+++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555 55555555556665566666666666666
Q ss_pred HHHhcCChhHHHHHHHHhHHhC
Q 008550 359 LLLSMKRPEAAVIAFRGAQELR 380 (561)
Q Consensus 359 ~~~~~~~~~~A~~~~~~~~~~~ 380 (561)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666655554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=1.3e-10 Score=105.68 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=87.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|...+..|++++|+..++.++...|+|+..+...+.++...|+..+|.+.+++++..+|..+..+..+|..+.+.|++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
+|+..++..+..+|+++..|..++..|.. |+..++. ...+..+...|++++|+..+..+.+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666655 5543332 23444555556666666666555554
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=4.3e-10 Score=102.31 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=123.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 246 PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 246 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
|..+.+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHH
Q 008550 326 LWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 326 ~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 404 (561)
.+.. |++.+|+..++..+..+|+++..|..++..|..+|+..+|...+ +..+...|++++|+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH----------------HHHHHhCCCHHHHHH
Confidence 8888 88888888888888888888888888888888888877765443 455667788888888
Q ss_pred HHHHHHHHC
Q 008550 405 AAREAMKAM 413 (561)
Q Consensus 405 ~~~~~~~~~ 413 (561)
.+..+.+..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 887777765
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.38 E-value=4.2e-11 Score=102.40 Aligned_cols=175 Identities=20% Similarity=0.275 Sum_probs=126.3
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+.....++..|..++..|+|.+|+..|++++...|..+ -...+.+.+|.++.
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----------------------------~a~~A~l~la~a~y 53 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP----------------------------YAPQAQLMLAYAYY 53 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----------------------------THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----------------------------HHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999987655 33568999999999
Q ss_pred hcCCHHHHHHHHhcC----CCcccchhHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhcCCCcHHHHHH---H
Q 008550 120 ALGETKAAIVEMEGI----PSKARNLQMSLLMAKLYRNSR-----------HNRGAVACYKECLRHCPFFIEAITA---L 181 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~----~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~---l 181 (561)
+.|+++.|+..++.+ +.+|..+.+++.+|.++.... ...+|+..|+..++..|++.-+-.. +
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 999999999998883 444566678899999876543 3458999999999999987654432 2
Q ss_pred HHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 008550 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKV 258 (561)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~ 258 (561)
..+.. .....-+..|..|++.|.+..|+..++.+++..|+.+ +++..++.+
T Consensus 134 ~~l~~--------------------------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 134 AELRN--------------------------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHH--------------------------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHH--------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 21110 0011123347888888888888888888888888764 567778888
Q ss_pred HHHhCCHHHH
Q 008550 259 DAIIGKNDEA 268 (561)
Q Consensus 259 ~~~~~~~~~A 268 (561)
|..+|..+.|
T Consensus 188 y~~l~~~~~a 197 (203)
T PF13525_consen 188 YYKLGLKQAA 197 (203)
T ss_dssp HHHTT-HHHH
T ss_pred HHHhCChHHH
Confidence 8888877744
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.36 E-value=1.2e-07 Score=92.74 Aligned_cols=427 Identities=15% Similarity=0.092 Sum_probs=263.8
Q ss_pred hhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHh
Q 008550 53 LFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEME 132 (561)
Q Consensus 53 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~ 132 (561)
....++|.+|.+...+.++..|+.+ -+....|..+.++|+.++|..+++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-------------------------------~a~vLkaLsl~r~gk~~ea~~~Le 67 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-------------------------------YAKVLKALSLFRLGKGDEALKLLE 67 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-------------------------------HHHHHHHHHHHHhcCchhHHHHHh
Confidence 4678999999999999999987544 467778999999999999999999
Q ss_pred cCCCc-ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCC
Q 008550 133 GIPSK-ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211 (561)
Q Consensus 133 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (561)
.+... +.+...+-.+-.+|..+|++++|..+|++++..+|. .+....+-..+.+.+.+..-...+.+.....|...
T Consensus 68 ~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-- 144 (932)
T KOG2053|consen 68 ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-- 144 (932)
T ss_pred hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 86444 567778888999999999999999999999999999 77777777777777776665555555554444321
Q ss_pred hhhHHHHHHHHHHHHHccCH---------HHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHH-HHHhh-
Q 008550 212 SSRWLHRYVEAQCCIASNDY---------KGGLELFAELLQRF-PNN-IHILLEMAKVDAIIGKNDEAILNFE-KVRSI- 278 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~---------~~A~~~~~~~~~~~-~~~-~~~~~~la~~~~~~~~~~~A~~~~~-~~~~~- 278 (561)
-..|... ..+....... .-|...+++.++.. +-. ..=....-.++..+|.+++|...+. ...+.
T Consensus 145 yyfWsV~---Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 145 YYFWSVI---SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred chHHHHH---HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 1222211 1112122222 23555666666555 221 1112233456677899999999983 33333
Q ss_pred CCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH----HH-HH--------HHh-cCHhHHHHHHHHHHh
Q 008550 279 DPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA----LS-VL--------WER-KDERGALSYAEKSIR 344 (561)
Q Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----l~-~~--------~~~-~~~~~A~~~~~~~~~ 344 (561)
.+.+..........+...+++.+-.++..+++...+++...+.. +- .. +.. +..+..++..++.+.
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~ 301 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIG 301 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhc
Confidence 34444445566778889999999999999999999988222111 11 11 111 334444444455544
Q ss_pred ccCCCh-hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----H---------------------------------HH
Q 008550 345 IDERHI-PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----R---------------------------------SY 386 (561)
Q Consensus 345 ~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~---------------------------------~~ 386 (561)
.....+ -++..+-.-+...|+.+++...|-+-+-..|-. . .+
T Consensus 302 ~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 302 SKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred ccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 423333 223333333457799999887776654433311 0 01
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHH-----------CCCC---HHHHHHH-----HHHHhhhcCC---hHHHHH
Q 008550 387 QGLVHSYLQFSK-----VKEALYAAREAMKA-----------MPQS---AKALKLV-----GDVHASNASG---REKAKK 439 (561)
Q Consensus 387 ~~l~~~~~~~~~-----~~~A~~~~~~~~~~-----------~p~~---~~~~~~l-----~~~~~~~~~~---~~~A~~ 439 (561)
.....+....|. -+.-..+++++... .|.. ...+..+ -..+.+. ++ +-+|+-
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt-nd~~~l~eaI~ 460 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT-NDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 111112222231 11222222222211 1111 2223222 2334443 44 467888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 440 FYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
.++..+..+|.+...-..+..+|...|-+..|.+.|...--.+ ..+.+-+.+-..+...|++..+...+...++...+
T Consensus 461 LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 461 LLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998653222 22233334444555667777777777777666443
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.29 E-value=1.7e-09 Score=94.70 Aligned_cols=172 Identities=14% Similarity=0.035 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---HHHHHHH
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHIL---LEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYA 290 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~ 290 (561)
..|..|...+..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.++.+|+++ .+++.+|
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 355668888888888888888888888888776544 7788888888888888888888888888774 4566666
Q ss_pred HHHHhcCC------------------HhHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhcCHhHHHHHHHHHHhccCCC
Q 008550 291 MLLKVKCD------------------YSKLSKLVHDLLSIDPSRPE---VFVALSVLWERKDERGALSYAEKSIRIDERH 349 (561)
Q Consensus 291 ~~~~~~~~------------------~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~ 349 (561)
.++...+. ..+|+..|+++++..|++.- +...+..+.. .-
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~-------------------~l 174 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKD-------------------RL 174 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-------------------HH
Confidence 65433321 13445555555555555422 1111111100 00
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
..--+..|..|.+.|.+..|+.-++.+++..|+. +++..++.+|...|..++|.....
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1112345555666666666666666666665553 345556666666666666555443
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=8.5e-11 Score=109.61 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=76.0
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCC
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNM 500 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 500 (561)
..|..++.. |++++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++.++|+. .+++.+|.++..+|+
T Consensus 7 ~~a~~a~~~-~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVD-DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345555555 677777777777777777777777777777777777777777777777776655 666777777777777
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 501 LQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 501 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
+++|+..|+++++++|+++.+...+..+...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666555
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=1.2e-10 Score=108.56 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=104.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
...|..++..|+|++|+..|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER 329 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 329 (561)
+++|+..|++++.++|+++.+...++.+...
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998888877544
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.28 E-value=1.2e-10 Score=94.00 Aligned_cols=132 Identities=18% Similarity=0.200 Sum_probs=109.8
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
.++.+...+..++...+...+..+....+ +.+....+.+.+|..++..|+|++|+..|++++...|+..
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------ 82 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYP-----SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------ 82 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------
Confidence 45667777788889888887888877532 2345667899999999999999999999999999753211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHH
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVAC 163 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 163 (561)
-...+++.+|.+++..|++++|+..++.+...+..+.++..+|.++...|++++|+..
T Consensus 83 ----------------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 83 ----------------------LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred ----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1145788999999999999999999999877777888999999999999999999999
Q ss_pred HHHHH
Q 008550 164 YKECL 168 (561)
Q Consensus 164 ~~~~l 168 (561)
|++++
T Consensus 141 y~~Al 145 (145)
T PF09976_consen 141 YQKAL 145 (145)
T ss_pred HHHhC
Confidence 99874
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.28 E-value=9.8e-10 Score=93.99 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=48.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh---HHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM---TYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 291 (561)
.|..|...+..|+|.+|+..|++++...|.+ +.+.+.+|.+++..|++++|+..+++.++..|.++ .+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4555777777777777777777777766654 46666777777777777777777777777766654 35555565
Q ss_pred HHHhc
Q 008550 292 LLKVK 296 (561)
Q Consensus 292 ~~~~~ 296 (561)
++...
T Consensus 88 ~~~~~ 92 (203)
T PF13525_consen 88 SYYKQ 92 (203)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=1.7e-09 Score=87.30 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSM 363 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 363 (561)
.++..|..|-..|-+.-|.--|.+++.+.|+.|+++..+|..+.. |+++.|.+.|+..++++|....++.+.|..+.-.
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec
Confidence 344445555566666666666666666777777777777776666 7777777777777777777777777777777777
Q ss_pred CChhHHHHHHHHhHHhCCChH
Q 008550 364 KRPEAAVIAFRGAQELRPDLR 384 (561)
Q Consensus 364 ~~~~~A~~~~~~~~~~~~~~~ 384 (561)
|++.-|.+.+.+..+.+|+++
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred CchHhhHHHHHHHHhcCCCCh
Confidence 777777777777776666663
No 134
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.26 E-value=3.9e-09 Score=92.04 Aligned_cols=293 Identities=18% Similarity=0.172 Sum_probs=221.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----hCCCC--hHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRS----IDPYI--MTYMDEY 289 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~--~~~~~~l 289 (561)
...|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.+++++.+---.+. ..... .+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344888889999999999999988764433 34455567788889999888766443333 22221 3678889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh------hHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRP-----EVFVALSVLWER-KDERGALSYAEKSIRIDERHI------PGYIMKG 357 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~------~~~~~l~ 357 (561)
+..+....++.+++.+.+..+......+ .+...++..+.. +.++++++.|+++++....+. .++..+|
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 9999999999999999888877654443 466778888888 999999999999998754332 5678899
Q ss_pred HHHHhcCChhHHHHHHHHhHHhCCCh-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------CCCHHHH
Q 008550 358 NLLLSMKRPEAAVIAFRGAQELRPDL-----------RSYQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKAL 420 (561)
Q Consensus 358 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~ 420 (561)
.++....++++|.-+..++.++..+. -+.+.++..+...|....|.++.+++.++. +......
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999999999988874321 146788999999999999999999987653 2335677
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHhhCCCh----
Q 008550 421 KLVGDVHASNASGREKAKKFYESALRLEPG------YLGAALALAELHVIEGRN-----GDAVSLLERYLKDWADD---- 485 (561)
Q Consensus 421 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~la~~~~~~g~~-----~~A~~~~~~~~~~~~~~---- 485 (561)
..+|.+|... |+.+.|..-|+++...... ...++...+.++....-. -.|++.-+++++....-
T Consensus 250 ~~~aDIyR~~-gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 250 LCFADIYRSR-GDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred HHHHHHHHhc-ccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 8899999998 9999999999999865321 234566666666544333 34888888888765432
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 486 ---SLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 486 ---~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
..+..++.+|..+|.-++=...+.++-
T Consensus 329 ~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 329 SVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 678999999999988877777666653
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=2.6e-10 Score=89.24 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVK 490 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 490 (561)
..++.+|..+... |++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..+++++...|+. .++..
T Consensus 3 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKA-GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4566777777776 77788888887777777665 4567777888888888888888888887776653 56788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
+|.++...|++++|...++++++..|+++.+...+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 888888888888888888888888888777655443
No 136
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.22 E-value=8.6e-09 Score=104.82 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc-cCCC----hhHHHHHHHHHHhcCChhHHHHHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-DERH----IPGYIMKGNLLLSMKRPEAAVIAFRG 375 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 375 (561)
..+-|++.+..+|+..-.|........+ ++.++|.+..++++.. ++.. ..+|..+-++...-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3445556666666666666666665555 6777777777766642 2222 24455555555555655666677777
Q ss_pred hHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC--CHH
Q 008550 376 AQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG--YLG 453 (561)
Q Consensus 376 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~ 453 (561)
+.+.......|..|..+|...+++++|.++++..++.+.+....|..++..+..+ .+-+.|...+.+|++.-|. +.+
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHHHHHHHHhhcchhhhHH
Confidence 7777666667777777888888888888888888877777777888888877776 6667777788888877776 566
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.....|.+.++.|+.+.+..+|+..+...|.- ++|.-+.+.-.+.|+.+.++..|++++.+.-.-.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 67777778888888888888888877777766 7777777777788888888888888877654333
No 137
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.19 E-value=5.8e-07 Score=79.67 Aligned_cols=288 Identities=16% Similarity=0.097 Sum_probs=207.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI-MTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 298 (561)
|.+....|+-..|.+.-.+.-+.-..+ +-++..-++.-.-.|+++.|.+-|+.++.. |.. .-.+..+-.--...|.
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhccc
Confidence 667777788888888888877654433 445555677778889999999999887653 322 2223333334456788
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc---cCCCh---hHHHHHHHHH-HhcCChhHHH
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI---DERHI---PGYIMKGNLL-LSMKRPEAAV 370 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~---~~~~~---~~~~~l~~~~-~~~~~~~~A~ 370 (561)
.+.|+.+-+.+....|.-+.++...-..... |+++.|++..+..... .++-. .+...-+... .-.-+...|.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 9999999999999988888777766655556 9999999988775543 22211 1111111111 2234577888
Q ss_pred HHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHH-HHHHHHHHHHhC
Q 008550 371 IAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREK-AKKFYESALRLE 448 (561)
Q Consensus 371 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~-A~~~~~~a~~~~ 448 (561)
..-.++.++.|+. ++-..-+..+++.|+..++-.+++.+.+..|. +.++..+ ++.+. |+... =.+-.++...+.
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY--~~ar~-gdta~dRlkRa~~L~slk 325 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY--VRARS-GDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH--HHhcC-CCcHHHHHHHHHHHHhcC
Confidence 8888899999987 66777788999999999999999999988883 4443322 22333 44322 223344455678
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-NMLQEALSHYEAALRI 514 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 514 (561)
|++.+..+..+..-+.-|++..|..--+.+....|...++..++.+-... |+-.+...++-++++-
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999888999999988776 9999999999999875
No 138
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.19 E-value=3.2e-07 Score=81.27 Aligned_cols=259 Identities=17% Similarity=0.129 Sum_probs=199.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN-IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
++.++...-.|+++.|.+-|+.++. +|.. .-.+..+-.-....|..+.|..+-+++....|.-+.++...-...+..|
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 4457788888999999999998874 3321 1111222222346799999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHhc---CCCCH---HHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 008550 298 DYSKLSKLVHDLLSI---DPSRP---EVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~---~~~~~---~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 369 (561)
+++.|+++.+..... .++.. .+-..-+..... .+...|...-..+.++.|+...+-..-+..+++.|+..++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 999999998766543 22221 122222333333 7788999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 370 VIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEA-LYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
-.+++.+.+..|....+. ..++.+.|+.... ++-.++...+.|++.+.....+.....- |++..|..--+.+....
T Consensus 283 ~~ilE~aWK~ePHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda-~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 283 SKILETAWKAEPHPDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA-GEFSAARAKAEAAAREA 359 (531)
T ss_pred hhHHHHHHhcCCChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc-cchHHHHHHHHHHhhhC
Confidence 999999999999875432 2233445543322 2334455668899999999999999987 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhC
Q 008550 449 PGYLGAALALAELHVIE-GRNGDAVSLLERYLKDW 482 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~ 482 (561)
|.. .++..++.+-... |+-.++..++-++++..
T Consensus 360 pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 360 PRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 875 6777888887766 99999999999998754
No 139
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=7e-08 Score=93.21 Aligned_cols=337 Identities=17% Similarity=0.100 Sum_probs=193.6
Q ss_pred HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhc
Q 008550 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
|...|+.+.|.+.++.|.. ..+|-.++....+..+.+-|..++-.+-. ......+-+
T Consensus 738 yvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~-----aRgaRAlR~-------------- 794 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKN-----ARGARALRR-------------- 794 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhh-----hhhHHHHHH--------------
Confidence 3456777888777766543 35777888888888887777766543311 000001100
Q ss_pred cccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008550 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
+. +.+.+ +. ..-|......|..++|..+|.+.-+. -.+-..|...|.+++|.+.-+.--+
T Consensus 795 a~----q~~~e--~e------akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DR 854 (1416)
T KOG3617|consen 795 AQ----QNGEE--DE------AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDR 854 (1416)
T ss_pred HH----hCCcc--hh------hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccc
Confidence 00 00000 00 00155666778888888888877443 2455667777888887776654222
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHh-cCHhHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL----------LSIDP----------SRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------~~~~~----------~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
+. -...+++++..+...++.+.|+++|++. +.-+| .++..|...|..+.. |+.+.|+
T Consensus 855 iH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 855 IH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred ee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 11 1245677777777788888888877654 22233 235577788888888 9999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 008550 337 SYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK----- 411 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 411 (561)
.+|..+-. |+.+..+.+-+|+.++|-.+-++. .+..+-+.+|+.|...|++.+|+.+|.++-.
T Consensus 933 ~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAI 1000 (1416)
T KOG3617|consen 933 SFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAI 1000 (1416)
T ss_pred HHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 98887642 344445555555555554443321 1223355556666666666666655554421
Q ss_pred -HCCCC--------------HHHHHHHHHHHhhhcCChHHHHHHHHHH------H-----------------HhCC-CCH
Q 008550 412 -AMPQS--------------AKALKLVGDVHASNASGREKAKKFYESA------L-----------------RLEP-GYL 452 (561)
Q Consensus 412 -~~p~~--------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a------~-----------------~~~p-~~~ 452 (561)
+...+ +.-....+..|....|....|+..|.++ + .++| .+|
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence 11111 1111122233333322444444444332 1 1233 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH------hhC----------------C------Ch----HHHHHHHHHHHHcCC
Q 008550 453 GAALALAELHVIEGRNGDAVSLLERYL------KDW----------------A------DD----SLHVKLAQVFAATNM 500 (561)
Q Consensus 453 ~~~~~la~~~~~~g~~~~A~~~~~~~~------~~~----------------~------~~----~~~~~la~~~~~~g~ 500 (561)
..+...+..+....+|++|..++-.+. .+. | +. .++..+|.++.++|.
T Consensus 1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~ 1160 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA 1160 (1416)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 777778888888888888887654432 211 1 11 578899999999999
Q ss_pred HHHHHHHHHHH
Q 008550 501 LQEALSHYEAA 511 (561)
Q Consensus 501 ~~~A~~~~~~a 511 (561)
|..|.+-|.+|
T Consensus 1161 Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1161 YHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHhhh
Confidence 99999888876
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3e-09 Score=91.73 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHH
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG---RNGDAVSLL 475 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~ 475 (561)
.+.-+.-++.-+..+|++++-|..+|.+|... |++..|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~-~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL-GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 44555666667777788888888888888777 78888888888888888888877777777766553 345677778
Q ss_pred HHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 476 ERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 476 ~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
++++..+|++ .+.+.+|..++..|++.+|...|+..++..|.+..-...+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 8888877777 77777788888888888888888888877766554433333
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.15 E-value=4.3e-09 Score=87.81 Aligned_cols=114 Identities=24% Similarity=0.238 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAEL 461 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 461 (561)
.++.+|..+...|++++|+.+|++++...|+. ..++..+|.++... |++++|+..+.+++...|.+...+..+|.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN-GEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 47788888888888888888888888776653 46788888888887 889999999999988888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 462 HVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+...|+...+...++.++. .+++|.+++++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888777766655432 3688889999999999888
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.15 E-value=2.8e-09 Score=85.95 Aligned_cols=118 Identities=25% Similarity=0.234 Sum_probs=97.3
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 008550 394 LQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGR 467 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~ 467 (561)
...++...+...++..+..+|+. ..+.+.+|.++... |++++|...|+.++...|+. +.+.+.++.++...|+
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~-g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQ-GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 35788888888899999999988 56677889999988 99999999999999877654 3477889999999999
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 468 NGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 468 ~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
+++|+..++........+.++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999997733222233788889999999999999999999874
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.5e-09 Score=92.26 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC---CHhHHHHHH
Q 008550 230 DYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC---DYSKLSKLV 306 (561)
Q Consensus 230 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~ 306 (561)
..+.-+.-++.-+..+|+|++.|..+|.+|+..|+++.|...|.+++++.|++++.+..+|.++..+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34455555555555566666666666666666666666666666666666666555555555544432 223444445
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC
Q 008550 307 HDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
++++..+|.+..+.+.+|..+.. |++.+|+..++.++...|.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 55555544444444444444444 4444444444444444443
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.13 E-value=2.2e-09 Score=84.00 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~ 292 (561)
+..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|+.++...|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445777788888888888888888777765 4677778888888888888888888888877764 4667777888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHH
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
+...|++++|...+++++...|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888777776543
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.1e-07 Score=79.75 Aligned_cols=254 Identities=13% Similarity=0.165 Sum_probs=181.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
-.+-++..|+|..++..-.+..... ..+.....+.+.|..+|++...+......- .....+...++.....-++.+
T Consensus 14 ~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 14 NIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 3667778899999888777664443 677888889999999998776554433321 122345555666666666655
Q ss_pred HHHHHHHHHHh-cCCCCHHHHH-HHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 301 KLSKLVHDLLS-IDPSRPEVFV-ALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 301 ~A~~~~~~~~~-~~~~~~~~~~-~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
+-+.-..+.+. .......++. .-+.++.. +++++|++..... .+.++...-..++.++.+++-|...++++.
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433 2222332444 44456677 9999999888763 345666666788889999999999999988
Q ss_pred HhCCChHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH
Q 008550 378 ELRPDLRSYQGLVHSYL----QFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG 453 (561)
Q Consensus 378 ~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 453 (561)
+++.+. ....++..+. ..+++.+|.-+|++.-+..|..+......+.++..+ |++++|...++.++..++++++
T Consensus 165 ~ided~-tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 165 QIDEDA-TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred ccchHH-HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhccCCCHH
Confidence 776543 2334444443 345688999999999888888999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHHhhCCCh
Q 008550 454 AALALAELHVIEGRNGDAVS-LLERYLKDWADD 485 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~~ 485 (561)
++.++..+-...|...++.. .+.+.....|..
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999999888888877654 445555555654
No 146
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.13 E-value=7.8e-08 Score=98.15 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSI-DPSR----PEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
+..+.|++.+.-+|+..-.|..+.....+.++.++|.++.++++.. ++.. -.+|..+-++... |.-+...+.|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3455667777777777777777777777777777777777777753 2322 2355555555555 76667777777
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC--CH
Q 008550 341 KSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ--SA 417 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~ 417 (561)
++.+.. +....+..+..+|...+.+++|.++++..++..... ..|...+..+++.++-+.|...+.++++.-|. +.
T Consensus 1522 RAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 777654 224567777788888888888888888888776644 56888888888888888888888888887776 66
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA 483 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 483 (561)
......+.+-++. |+.+.+...|+..+...|...+.|.-+...-.+.|+.+.+..+|++++.+.-
T Consensus 1601 ~~IskfAqLEFk~-GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKY-GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHHHHHHHHhhc-CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 7777777777777 8888888888888888888888888888888888888888888888877653
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.13 E-value=1.1e-08 Score=92.80 Aligned_cols=130 Identities=20% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-------HHH
Q 008550 389 LVHSYLQF-SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY-------LGA 454 (561)
Q Consensus 389 l~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~ 454 (561)
+|.+|... |++++|+++|+++++..... ...+..+|.++... |+|++|++.|++.....-++ ...
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34455444 55555555555554432111 23344555555555 56666666665555432111 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCh------HHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCccH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADD------SLHVKLAQVFAA--TNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~ 519 (561)
++..+.|++..|++..|...+++....+|.- .+...+-.++.. ...+.+|+..|.+.-+++|-..
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~ 271 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKT 271 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHH
Confidence 3444555666666666666666666555421 233333333332 2346666666666555554333
No 148
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.11 E-value=4.6e-09 Score=95.17 Aligned_cols=183 Identities=21% Similarity=0.198 Sum_probs=118.1
Q ss_pred HHHHHhcCChhHHHHHHHHhHHhCC--C--h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC------HHHHHHH
Q 008550 357 GNLLLSMKRPEAAVIAFRGAQELRP--D--L---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS------AKALKLV 423 (561)
Q Consensus 357 ~~~~~~~~~~~~A~~~~~~~~~~~~--~--~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l 423 (561)
|.+|...|++++|...|.++..... + . ..+...+.++.+. ++++|+.++++++...-.. ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4455555555555555555544311 1 1 1234445554444 7777777777776643211 4566778
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPG--Y----LGAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHV 489 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~ 489 (561)
|.++....|++++|+++|++++..... . ...+..+|.++...|+|++|++.|++......+. ..++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 888887447999999999999986321 2 3466789999999999999999999998754221 4667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhccCCCCCCC
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAA--KKGLERLEKQMKGVDPDAP 540 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~l~~~~~~~~~~~~ 540 (561)
..+.|+...|++..|...+++....+|..... ...+..|.......|.+..
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 78889999999999999999999999854332 3345555555544454443
No 149
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.11 E-value=1.1e-06 Score=79.21 Aligned_cols=222 Identities=25% Similarity=0.256 Sum_probs=141.8
Q ss_pred hCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcCCHhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 262 IGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCDYSKLSKLVHDLLS--IDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
.+.+..+...+.......+.. .......+..+...+.+..+...+..... ..+.....+...+..... +++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666666665552 55666666677777777777777766665 556666666667766666 6777777
Q ss_pred HHHHHHHhccCCChhHHHHHHH-HHHhcCChhHHHHHHHHhHHhCCC--h--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGN-LLLSMKRPEAAVIAFRGAQELRPD--L--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
..+..++...+.........+. ++...|+++.|...+.+++...|. . ..+...+..+...++++.++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777666665444444444 667777777777777777665552 1 2344445556666677777777777777
Q ss_pred HCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 412 AMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 412 ~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
..+. ....+..++..+... +.+..|...+..++...|.....+..++..+...|.++.+...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKL-GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHc-ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666 566666666666665 66677777777776666664455555555555555566666666666666554
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=2.4e-08 Score=80.81 Aligned_cols=194 Identities=14% Similarity=0.062 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK 294 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 294 (561)
...+|.+|..|-..|-..-|.--|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|...-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 33455667777777888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFR 374 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 374 (561)
--|++.-|.+-+.+..+.+|++|---..+-..-..-++.+|..-+.+-.+...+....|...+ +.+|+..+ ...++
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~---~yLgkiS~-e~l~~ 220 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVE---FYLGKISE-ETLME 220 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHH---HHHhhccH-HHHHH
Confidence 888888888888888888888764322222222225566665544332222211122222211 11232221 12233
Q ss_pred HhHHhCCCh--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 375 GAQELRPDL--------RSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 375 ~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++.....++ ++++.+|..+...|+.++|...|+-++..
T Consensus 221 ~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 221 RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333222221 34666777777777777777777666654
No 151
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=2.1e-06 Score=83.45 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH----------HhcCCCcHHHHHHHHH
Q 008550 114 IASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----------LRHCPFFIEAITALAE 183 (561)
Q Consensus 114 ~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----------l~~~p~~~~~~~~l~~ 183 (561)
+-..|...|.+++|.++.+.-. .-.-...++..+..+...++.+.|+.+|+++ +..+|...+-+...
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~D-RiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~-- 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKD-RIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR-- 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhcc-ceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh--
Confidence 4566778899999998876421 1112346788888889999999999999876 23333332222211
Q ss_pred HcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------
Q 008550 184 LGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-------------------- 243 (561)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------- 243 (561)
.. ...-..|+ |..+-..|+.+.|+.+|..+-.
T Consensus 909 -----~~------------------d~~L~~WW-----gqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 909 -----KR------------------DESLYSWW-----GQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred -----cc------------------chHHHHHH-----HHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 00 01122344 5555667777777777776542
Q ss_pred -hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 244 -RFPNNIHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 244 -~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
....+..+.+.+|+.|...|++.+|+.+|.++
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 12344556667777777777777777766655
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.09 E-value=5.1e-09 Score=92.13 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=73.4
Q ss_pred HHHHHHHHHH-hhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHH
Q 008550 418 KALKLVGDVH-ASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHV 489 (561)
Q Consensus 418 ~~~~~l~~~~-~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 489 (561)
...+..+..+ ... |++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ ++++
T Consensus 143 ~~~Y~~A~~l~~~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDK-SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4444444443 333 66666666666666666665 3566667777777777777777777776666653 6777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.+|.++..+|++++|+..|+++++..|++..+.....+|
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 777777777888888888888887777777766665554
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=99.09 E-value=2.9e-09 Score=83.49 Aligned_cols=116 Identities=10% Similarity=0.019 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQ 493 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~ 493 (561)
+..+..+..|.-+... |++++|...|+-....+|.+++.+..||.++..+|++++|+..|..+..+.+++ ...+..|.
T Consensus 35 ~~le~iY~~Ay~~y~~-Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQ-GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 3344555555555555 666666666666666666666666666666666666666666666666555444 45566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 494 VFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 494 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
|+..+|+.+.|+.+|+.++. .|.+......-..+...+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence 66666666666666666666 455555544443333333
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=99.08 E-value=4.2e-09 Score=82.60 Aligned_cols=96 Identities=15% Similarity=0.101 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL 361 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 361 (561)
.+..+..|.-++..|++++|..+|+-+.-.+|.+++.|..+|.++.. ++|++|+..|..+..+.++++...+..|.|++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 34444455555555555555555555555555555555555555555 55555555555555555555555555555555
Q ss_pred hcCChhHHHHHHHHhHH
Q 008550 362 SMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~ 378 (561)
.+|+.+.|..+|..++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 55555555555555554
No 155
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.07 E-value=1.4e-07 Score=82.65 Aligned_cols=302 Identities=14% Similarity=0.090 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHH
Q 008550 142 QMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVE 221 (561)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (561)
.-...-|.-++...++++|+..+.+.+..-.+...-+..++-+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l------------------------------------- 49 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCL------------------------------------- 49 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------------
Confidence 3445566667778888888888888876544333322222111
Q ss_pred HHHHHHccCHHHHHHHHHHHHH----hCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-----HHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQ----RFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-----TYMDEYA 290 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 290 (561)
..+....|.|++++..--..+. .... --+++..+++.+...-++.+++.+-...+.+....+ .....++
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 4445555666665544333322 1111 136677888888888888888888887776543332 4566788
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC----C------hhHH
Q 008550 291 MLLKVKCDYSKLSKLVHDLLSIDPSR------PEVFVALSVLWER-KDERGALSYAEKSIRIDER----H------IPGY 353 (561)
Q Consensus 291 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~----~------~~~~ 353 (561)
..+..++.++++++.|+.+++...++ -.++..+|.++.+ .|+++|+-+..++..+... + ..+.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 88888899999999999988764433 2478889999999 9999999998888775322 1 2456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCC--Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC------CHHHH
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRP--DL-----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ------SAKAL 420 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 420 (561)
+.++..+...|+...|.++.+++.++.- .+ .....+|.+|...|+.+.|..-|+.+...... ...++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 7788899999999999999999877632 22 23567899999999999999999988764321 13444
Q ss_pred HHHHHHHhhhcCCh-----HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 421 KLVGDVHASNASGR-----EKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 421 ~~l~~~~~~~~~~~-----~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
...+.++... .-. -.|++.-++++++...- ...+..++.+|...|.-++-...+..+-+.
T Consensus 290 ~g~Akc~~~~-r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 290 DGAAKCLETL-RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 4555555443 222 34777777777654221 246678899999998877776666665443
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=9.7e-10 Score=75.88 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN-MLQEALSHYEAALRINS 516 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 516 (561)
+.++..+|.++...|++++|+..|+++++.+|++ .+++.+|.++..+| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444555555555555555555555555555544 45555555555555 45555555555555554
No 157
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.2e-07 Score=79.68 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHH
Q 008550 115 ASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 115 a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 164 (561)
.+-++-.|+|..++...+.....+......+.+.+.|..+|++...+...
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI 64 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI 64 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc
Confidence 34556679999999988886656677788888999999999876555443
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.06 E-value=1.5e-06 Score=85.41 Aligned_cols=290 Identities=14% Similarity=0.046 Sum_probs=199.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 302 (561)
.-....+++.+|+....+.++..|+.+.+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+++.++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34456799999999999999999999999999999999999999999999888888888888899999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHH-hcCChh---------HHHH
Q 008550 303 SKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLL-SMKRPE---------AAVI 371 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~---------~A~~ 371 (561)
..+|+++...+|. .+....+-.+|.+ +.|.+-.+.--+..+..|+.+..+.....+.+ .....+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 7888888888888 88887666666666778887755444444433 333322 3445
Q ss_pred HHHHhHHhC-CCh-HH-HHHHHHHHHhcCCHHHHHHHH-HHHHHHCCCCHHHH-HHHHHHHhhhcCChHHHHHHHHHHHH
Q 008550 372 AFRGAQELR-PDL-RS-YQGLVHSYLQFSKVKEALYAA-REAMKAMPQSAKAL-KLVGDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 372 ~~~~~~~~~-~~~-~~-~~~l~~~~~~~~~~~~A~~~~-~~~~~~~p~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
..++.++.. +-. .+ ....-.++..+|++++|..++ ....+..+..+..+ ...+..+... +++.+-.+...+++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l-~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL-NRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 555655555 211 22 333445677889999999999 44444544444444 4445555555 899999999999998
Q ss_pred hCCCCHHHHHH-HHHH------------HHHcCChHHHHHHHHHHHhhCC-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 447 LEPGYLGAALA-LAEL------------HVIEGRNGDAVSLLERYLKDWA-DD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 447 ~~p~~~~~~~~-la~~------------~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.++++...+.. .-.+ +...+..+..++...+.+.... .+ -++..+-.-+...|+.+++...|-+-
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 88887222111 1111 1222334444444444444321 22 23333333345668888877666554
Q ss_pred Hhc
Q 008550 512 LRI 514 (561)
Q Consensus 512 l~~ 514 (561)
+..
T Consensus 335 fg~ 337 (932)
T KOG2053|consen 335 FGD 337 (932)
T ss_pred hCC
Confidence 433
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=9.5e-10 Score=75.92 Aligned_cols=67 Identities=24% Similarity=0.268 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCC
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG-RNGDAVSLLERYLKDWA 483 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~ 483 (561)
++..|..+|.++... |++++|+.+|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666666666666 66666666666666666666666666666666666 56666666666666655
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=3.5e-09 Score=79.33 Aligned_cols=94 Identities=24% Similarity=0.215 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
+.+|.++...|++++|+..+++++...|.++.++..+|.++... +++++|+.++++++...|.+..++..+|.++...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444 44444444444444444444444444444444444
Q ss_pred ChHHHHHHHHHHHhh
Q 008550 467 RNGDAVSLLERYLKD 481 (561)
Q Consensus 467 ~~~~A~~~~~~~~~~ 481 (561)
++++|...+.++++.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 444444444444433
No 161
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=5.9e-07 Score=81.92 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-HhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---------
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELL-QRFPN--------NIHILLEMAKVDAIIGKNDEAILNFEKVRSI--------- 278 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------- 278 (561)
..++++..++..|++.+|.+.+...- ...|. .-..|..+|.++++.|.|.-+..+|.++++.
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 44556777777777777777665432 11222 1123456777777777777777777777741
Q ss_pred CC---------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 279 DP---------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 279 ~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
.| ...+.+++.|..+...|++-.|.++|.++...+..+|..|..++.+..
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 124566777777777777777777777777777777777777777664
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.04 E-value=8.1e-09 Score=85.90 Aligned_cols=100 Identities=22% Similarity=0.100 Sum_probs=68.2
Q ss_pred hhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHhhhcCChHHHHH
Q 008550 366 PEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQS---AKALKLVGDVHASNASGREKAKK 439 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~A~~ 439 (561)
+..+...+...++..+.. ..++.+|.++...|++++|+..|++++...|+. +.++..+|.++... |++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-GEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-CCHHHHHH
Confidence 444444444443333333 346777777777788888888888887776553 34777788888877 88888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 440 FYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
.+++++.+.|.....+..+|.++...|
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 888888888877777777777776444
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.04 E-value=1.3e-08 Score=84.86 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 348 RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 348 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
.....++.+|..+...|++++|+.+|++++...|+. .++..+|.++...|++++|+..+++++...|+++..+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344566777777777788888888887777765542 3577888888888888888888888888888888888888
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
|.++... |+...+...+..++. .+.+|++++++++...|++
T Consensus 113 g~~~~~~-g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKR-GEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHc-CChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888776 776655554444432 2456666666666666654
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.03 E-value=8.1e-10 Score=79.52 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=66.9
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKL 305 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 305 (561)
+|+++.|+..+++++...|. +...++.+|.+++..|++++|+..+++ .+.+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 58889999999999988885 456677789999999999999999988 778888888888889999999999999988
Q ss_pred HHHH
Q 008550 306 VHDL 309 (561)
Q Consensus 306 ~~~~ 309 (561)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.03 E-value=1.2e-09 Score=74.36 Aligned_cols=63 Identities=22% Similarity=0.349 Sum_probs=46.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
.|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 377777777777777777777777777777777777777777777777777777777777664
No 166
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.03 E-value=8.8e-07 Score=79.80 Aligned_cols=222 Identities=27% Similarity=0.314 Sum_probs=193.1
Q ss_pred ccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 228 SNDYKGGLELFAELLQRFPN--NIHILLEMAKVDAIIGKNDEAILNFEKVRS--IDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.+.+..+...+.......+. ........+..+...+.+..+...+..... ..+.....+...+......+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777888888888887776 378888999999999999999999999987 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH-HHHh-cCHhHHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALSV-LWER-KDERGALSYAEKSIRIDE---RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
..+..+....+.........+. ++.. |+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988877665666665 6777 999999999999988776 3456666777778889999999999999999
Q ss_pred hCCC-h-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 379 LRPD-L-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 379 ~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
..+. . ..+..++..+...++++.|...+..++...|.....+...+..+... +.++.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL-GRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc-CCHHHHHHHHHHHHHhCcc
Confidence 9888 3 66889999999999999999999999999998788888888888844 8899999999999999987
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.8e-09 Score=93.27 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=93.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPD----------------LRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA 417 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 417 (561)
...|..+++.|+|..|...|++++..-+. ..++.+++.++.++++|.+|+..+.+++...|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34566677777777777777776654221 12477888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHhh
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDA-VSLLERYLKD 481 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~ 481 (561)
.+++..|.++... |+++.|+..|++++++.|.|..+...+..+..+..++.+. .+.|.+++..
T Consensus 292 KALyRrG~A~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 292 KALYRRGQALLAL-GEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888887 8888888888888888888888877777776665555443 5556555543
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=1.3e-09 Score=78.40 Aligned_cols=79 Identities=29% Similarity=0.397 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
|+++.|+..++++++..|. +...++.+|.++++.|++++|+.++++ .+..+.+ ..++.+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6777777777777777774 344566677777777777777777777 5555555 66667777888888888887777
Q ss_pred HHH
Q 008550 509 EAA 511 (561)
Q Consensus 509 ~~a 511 (561)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 764
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.02 E-value=6.7e-09 Score=77.78 Aligned_cols=94 Identities=21% Similarity=0.300 Sum_probs=67.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 36666777777777777777777777776777777777777777777777777777777777667777777777777777
Q ss_pred HHHHHHHHHHhcCC
Q 008550 301 KLSKLVHDLLSIDP 314 (561)
Q Consensus 301 ~A~~~~~~~~~~~~ 314 (561)
.|...+.+++...|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 77777777666555
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.02 E-value=1.9e-09 Score=73.32 Aligned_cols=63 Identities=29% Similarity=0.384 Sum_probs=47.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccH
Q 008550 457 ALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNE 519 (561)
Q Consensus 457 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 519 (561)
.+|..+...|++++|+..|+++++..|++ .+++.+|.++...|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777777788888888888887777776 7778888888888888888888888888887765
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=99.02 E-value=5.5e-08 Score=89.51 Aligned_cols=156 Identities=8% Similarity=0.044 Sum_probs=86.3
Q ss_pred HHHHHHHHHccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhhCCCCh
Q 008550 219 YVEAQCCIASND---YKGGLELFAELL---QRFPNNIHILLEMAKVDAII---------GKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 219 ~~~a~~~~~~~~---~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~~~~~ 283 (561)
++.|...+..+. ...|+.+|.+++ ..+|+...++..++.+++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 455555544433 345666677777 66666666666666666543 123345555556666666666
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHH-HH
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNL-LL 361 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~ 361 (561)
.++..+|.++...++++.|...|+++..++|+.+.+|+..|.+... |+.++|+..++++++++|....+-...-.+ .+
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666655555 666666666666666655544333222222 22
Q ss_pred hcCChhHHHHHHH
Q 008550 362 SMKRPEAAVIAFR 374 (561)
Q Consensus 362 ~~~~~~~A~~~~~ 374 (561)
-....+.|+..|-
T Consensus 419 ~~~~~~~~~~~~~ 431 (458)
T PRK11906 419 VPNPLKNNIKLYY 431 (458)
T ss_pred cCCchhhhHHHHh
Confidence 3334444544443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=1.4e-08 Score=84.41 Aligned_cols=100 Identities=10% Similarity=0.135 Sum_probs=78.4
Q ss_pred cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcCCHhHHH
Q 008550 229 NDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 303 (561)
+.|..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 45666666776665555544 5677888888888899999999999998876653 357888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
..+++++...|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 8888888888888888888877776
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=1.9e-08 Score=97.81 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=96.5
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-------CChHHHHHHHHHHHHh--CCCCHHH
Q 008550 387 QGLVHSYLQFS---KVKEALYAAREAMKAMPQSAKALKLVGDVHASNA-------SGREKAKKFYESALRL--EPGYLGA 454 (561)
Q Consensus 387 ~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-------~~~~~A~~~~~~a~~~--~p~~~~~ 454 (561)
+..|..+...+ ....|+.+|+++++.+|+++.++..++.++.... .+...+.....+++.+ +|.++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~ 422 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRI 422 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHH
Confidence 33444444333 3667777777777777777777777666654430 1223455555555553 6667778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 455 ALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 455 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
+..+|..+...|++++|...+++++.++|+...|..+|.++...|++++|.+.|++|+.++|.++.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 888888888888888888888888888887688888888888888888888888888888888774
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.00 E-value=2.4e-05 Score=72.77 Aligned_cols=416 Identities=11% Similarity=0.031 Sum_probs=253.7
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+....+|+.+-+-+-.+ -+++....|++.+...|..|. ++.......+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r-------------------------------~W~~yi~~El 64 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPR-------------------------------AWKLYIEREL 64 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcH-------------------------------HHHHHHHHHH
Confidence 34456788877777666 889999999999988876664 4555666777
Q ss_pred hcCCHHHHHHHHhcCCCcccchhHHHH-HHHHHHhcCChhhHHHHHHHHH-------hcCCCcHHHHHHHHHHcCCcccH
Q 008550 120 ALGETKAAIVEMEGIPSKARNLQMSLL-MAKLYRNSRHNRGAVACYKECL-------RHCPFFIEAITALAELGATPKDI 191 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~~~~ 191 (561)
..++|+....+|.+.....-+.+.|.. +-.+-...|+...+....-++. ..++.+...|...+........
T Consensus 65 ~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea- 143 (656)
T KOG1914|consen 65 ASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEA- 143 (656)
T ss_pred HhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccc-
Confidence 788888888888774444444666643 3444444555544333333332 2344444455444322111100
Q ss_pred hHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHH-----------HHH--
Q 008550 192 ISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH-ILLE-----------MAK-- 257 (561)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~-----------la~-- 257 (561)
-..+..+.+.+...+.|++++..--.+.+ .|.. .|.
T Consensus 144 ------------------------------~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~ 193 (656)
T KOG1914|consen 144 ------------------------------VGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKF 193 (656)
T ss_pred ------------------------------cccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122334667777777777754333321 1111 111
Q ss_pred HHHHhCCHHHHHHHHHHHHhh-------CCC----C-------hHHHHHHHHHHHhcC------C--HhHHHHHHHHHHh
Q 008550 258 VDAIIGKNDEAILNFEKVRSI-------DPY----I-------MTYMDEYAMLLKVKC------D--YSKLSKLVHDLLS 311 (561)
Q Consensus 258 ~~~~~~~~~~A~~~~~~~~~~-------~~~----~-------~~~~~~l~~~~~~~~------~--~~~A~~~~~~~~~ 311 (561)
+-.....|..|...++....+ +|. . .+.|.++...-...+ . .....-.+++++.
T Consensus 194 i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll 273 (656)
T KOG1914|consen 194 IGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL 273 (656)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH
Confidence 111223355555555544332 111 1 112322222111111 1 1223345677777
Q ss_pred cCCCCHHHHHHHHHHHHh-cC--------------HhHHHHHHHHHHhccC-CChhHHHHHHHHHHhcC---ChhHHHHH
Q 008550 312 IDPSRPEVFVALSVLWER-KD--------------ERGALSYAEKSIRIDE-RHIPGYIMKGNLLLSMK---RPEAAVIA 372 (561)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~-~~--------------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~---~~~~A~~~ 372 (561)
..+..+++|+..+..+.. ++ -+++..+|++++..-- .+...++.++..-...- .++.....
T Consensus 274 ~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~ 353 (656)
T KOG1914|consen 274 YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEI 353 (656)
T ss_pred HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHH
Confidence 788889998887776665 55 6688888888876432 23333444443322222 35666677
Q ss_pred HHHhHHhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC
Q 008550 373 FRGAQELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPG 450 (561)
Q Consensus 373 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~ 450 (561)
+++++...... -+|..+...-.+..-...|..+|.++-+.......++..-|.+-....++..-|...|+-.++..++
T Consensus 354 ~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d 433 (656)
T KOG1914|consen 354 YNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD 433 (656)
T ss_pred HHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Confidence 77777664333 2355555555666667888888888876544333444444444333349999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 451 YLGAALALAELHVIEGRNGDAVSLLERYLKD--WADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+.........+...++-..|..+|++++.. .++. ++|-.+-..-..-|+...+++.=++-....|.+
T Consensus 434 ~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 434 SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999987 3333 789888888899999999998888877777733
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.00 E-value=3.3e-08 Score=96.21 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=112.6
Q ss_pred HHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC--------CHhHHHHHHHH
Q 008550 242 LQRFPNNIHIL--LEMAKVDAIIGK---NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC--------DYSKLSKLVHD 308 (561)
Q Consensus 242 ~~~~~~~~~~~--~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~ 308 (561)
....|.++.+| +..|.-+...++ ...|+.+|+++++.+|++..++..++.++.... +...+.....+
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 35566666554 445666655544 778899999999999999888888777665432 23455666666
Q ss_pred HHhc--CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHH
Q 008550 309 LLSI--DPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRS 385 (561)
Q Consensus 309 ~~~~--~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 385 (561)
++.. .|.++.++..+|..... |++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|..+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5553 67778888888888877 999999999999999999 4789999999999999999999999999999999865
Q ss_pred H
Q 008550 386 Y 386 (561)
Q Consensus 386 ~ 386 (561)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.99 E-value=2.3e-07 Score=78.47 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
...+..++..|...++.|+|++|+..|+.+....|..| -...+.+.++.++.
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----------------------------~~~qa~l~l~yA~Y 82 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----------------------------YSEQAQLDLAYAYY 82 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----------------------------ccHHHHHHHHHHHH
Confidence 34577899999999999999999999999999887655 22568899999999
Q ss_pred hcCCHHHHHHHHhc-C---CCcccchhHHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 120 ALGETKAAIVEMEG-I---PSKARNLQMSLLMAKLYRNSR--------HNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 120 ~~~~~~~A~~~l~~-~---~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
+.++++.|+..+++ + +.+|+-.-++++.|.+++..= -..+|+..|+.++...|++.-+......+-..
T Consensus 83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~ 162 (254)
T COG4105 83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKL 162 (254)
T ss_pred hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 99999999998887 3 344555567788888876422 24578889999999999876544332221100
Q ss_pred cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCC
Q 008550 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGK 264 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~ 264 (561)
.... .-.-+.-|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-
T Consensus 163 ~d~L-----------------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 163 NDAL-----------------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 0000 0001122777778888888888888888776654 4566677777777777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 008550 265 NDEAILNFEKVRSIDPYI 282 (561)
Q Consensus 265 ~~~A~~~~~~~~~~~~~~ 282 (561)
.++|...-.-+-...|++
T Consensus 220 ~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 220 TDEAKKTAKVLGANYPDS 237 (254)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 777766555444444444
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=2.4e-08 Score=87.93 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=86.2
Q ss_pred HHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 008550 219 YVEAQCC-IASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM 291 (561)
Q Consensus 219 ~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 291 (561)
|..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4446665 55789999999999999999987 5799999999999999999999999999887775 678888899
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEV 319 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 319 (561)
++...|++++|...|+++++.+|++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999988887654
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.3e-08 Score=89.56 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=106.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFP----NN-----------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~----~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
.|..+++.|+|..|...|++++..-+ .+ ..++.+++.|+.++++|..|+..+.+++..+|.|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 48899999999999999999887532 11 3567888999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHh-HHHHHHHHHHhccC
Q 008550 286 MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDER-GALSYAEKSIRIDE 347 (561)
Q Consensus 286 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~A~~~~~~~~~~~~ 347 (561)
+++.|.++...|+++.|+..|+++++..|.+..+...+..+... ..+. +..+.|.+++...+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998888888888777 4444 56778888776543
No 179
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.95 E-value=4e-07 Score=77.00 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=37.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
+|..|...++.|++++|+..|+.+....|.+ ..+...++.++++.+++++|+...++.+.+.|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 4444555556666666666666655555543 34555555556666666666666666666555554
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.94 E-value=2.8e-07 Score=72.86 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=115.3
Q ss_pred HHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 360 LLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMK-AMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 360 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
..+.=+++.......+.+...|.....+.++......|++.+|...|++++. .+.+++..+..++...+.. +++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHH
Confidence 3344455555666666666677776777888888888888888888888775 5667788888888888887 8888888
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 439 KFYESALRLEPG--YLGAALALAELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 439 ~~~~~a~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
..+++..+.+|. .++....+|.++...|++.+|...|+.++...|........+..+.++|+..+|..-+..+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 888888887764 4667778888888888888888888888888888877788888888888777766555443
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.94 E-value=6.5e-10 Score=96.01 Aligned_cols=230 Identities=9% Similarity=0.057 Sum_probs=168.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
+|..|+.+|.|++|+.+|.+.+..+|.|+..+...|.+|++..++..|...+..++.++.....+|...+..-..+|+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHH---------HHHHHHHHhcCChhHHHH
Q 008550 301 KLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGY---------IMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~A~~ 371 (561)
+|.+-++.++.+.|++.+....++.+-.. .+ -+-+.+..|....+. ...|..+...|.++.++.
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl---~E----~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARINSL---RE----RKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHhcch---Hh----hhHHhhcCCCCCccccchhhhccccCcchhhhhhhcccccee
Confidence 99999999999999987766555544321 11 011122222222111 223566677788888888
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
++.+-+....++..+..-+..+.+.-+++.++....+.+...|.........+.+-.-. |...++...++.++.+.|.+
T Consensus 256 ~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~-~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 256 DVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIA-KTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred EeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHH-hhhhhcCcchhheeeecccc
Confidence 87776655444322222256666777788888777777766666555444444444444 67777888888888888876
Q ss_pred HHHHHHH
Q 008550 452 LGAALAL 458 (561)
Q Consensus 452 ~~~~~~l 458 (561)
......+
T Consensus 335 ~~~~~~~ 341 (536)
T KOG4648|consen 335 ETPKETE 341 (536)
T ss_pred ccchhhh
Confidence 5444333
No 182
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=8.5e-08 Score=88.30 Aligned_cols=171 Identities=13% Similarity=0.073 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhcCC---hhhHHHHHHHHH---hcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHH
Q 008550 143 MSLLMAKLYRNSRH---NRGAVACYKECL---RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWL 216 (561)
Q Consensus 143 ~~~~l~~~~~~~~~---~~~A~~~~~~~l---~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (561)
..+..|......+. .+.|..+|.+++ ..+|+...++-.++.++...
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~---------------------------- 308 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSL---------------------------- 308 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHH----------------------------
Confidence 33677777766554 568999999999 99999999998887664311
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc
Q 008550 217 HRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK 296 (561)
Q Consensus 217 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 296 (561)
...|..- ......+|.+..+++++.+|.|+.++..+|.+....++++.|...|++++.++|+...+++..|.+....
T Consensus 309 --~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 309 --ALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred --HHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 0111111 3356678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCHHHHHH--HHHHHHhcCHhHHHHHHHHHHh
Q 008550 297 CDYSKLSKLVHDLLSIDPSRPEVFVA--LSVLWERKDERGALSYAEKSIR 344 (561)
Q Consensus 297 ~~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~A~~~~~~~~~ 344 (561)
|+.++|...++++++++|....+-.. ....|.....++|+..|-+-.+
T Consensus 386 G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 386 EKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred CCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999999999999987543332 2224555788888888866443
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=5.5e-05 Score=70.50 Aligned_cols=392 Identities=13% Similarity=0.046 Sum_probs=215.4
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChh
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSS 213 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (561)
+..+|.+...|+.|.+-+..+ -+++....|++.+...|..+.+|...++.....++++..-..+.+-... ...-.
T Consensus 13 ie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk----vLnlD 87 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK----VLNLD 87 (656)
T ss_pred HhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HhhHh
Confidence 556688888888887777666 7888888888888888888888776654444443332221111100000 01122
Q ss_pred hHHHHHHHHHHHHHccCHHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHh
Q 008550 214 RWLHRYVEAQCCIASNDYKGGLE----LFAELLQR---FPNNIHILLEMAKVDA---------IIGKNDEAILNFEKVRS 277 (561)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~A~~----~~~~~~~~---~~~~~~~~~~la~~~~---------~~~~~~~A~~~~~~~~~ 277 (561)
.|..++ ..+-...|+...+.. .|+-++.. ++.+..+|...+..+. ...+.+.....|++++.
T Consensus 88 LW~lYl--~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 88 LWKLYL--SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHH--HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 222221 112222333333332 23333332 3444455555444332 22244555666666666
Q ss_pred hCCCCh-HHHHHHHHHHH-------------hcCCHhHHHHHHHHHHhc-------CCC----C-------HHHHHHHHH
Q 008550 278 IDPYIM-TYMDEYAMLLK-------------VKCDYSKLSKLVHDLLSI-------DPS----R-------PEVFVALSV 325 (561)
Q Consensus 278 ~~~~~~-~~~~~l~~~~~-------------~~~~~~~A~~~~~~~~~~-------~~~----~-------~~~~~~l~~ 325 (561)
..-.+. ..|..+-..-. ....|..|...+++.... .|. . .+.|.++..
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 543443 23333322111 122344455544444321 111 0 112333322
Q ss_pred HHHh-------cCH--hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--------------hhHHHHHHHHhHHhCCC
Q 008550 326 LWER-------KDE--RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPD 382 (561)
Q Consensus 326 ~~~~-------~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~ 382 (561)
.-.. |.. ..-.-.+++++..-+..+++|+..+..+...++ .+++..+|++++.....
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 2111 111 123344566666667777777766555555554 56777888887765333
Q ss_pred h--HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHH
Q 008550 383 L--RSYQGLVHSYLQFS---KVKEALYAAREAMKAMPQSA-KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 383 ~--~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
. ..++.++..-...- +.+.....+++++.....++ -++..+-....+. .....|...|.++-+..-..-.++.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhH
Confidence 2 22444444332222 36667777888776544333 3445555555555 6788999999998765433334444
Q ss_pred HHHHH-HHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-cHHHHHHHHHHHHh
Q 008550 457 ALAEL-HVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRI--NSQ-NEAAKKGLERLEKQ 531 (561)
Q Consensus 457 ~la~~-~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~l~~~ 531 (561)
.-|.+ |...++..-|..+|+-.++..+++ ..-......+..+|+-..|...|++++.. .|+ ...+|..+......
T Consensus 405 a~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 405 AAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 44433 456799999999999999999987 56677788889999999999999999987 433 34566665555554
Q ss_pred cc
Q 008550 532 MK 533 (561)
Q Consensus 532 ~~ 533 (561)
.|
T Consensus 485 vG 486 (656)
T KOG1914|consen 485 VG 486 (656)
T ss_pred cc
Confidence 44
No 184
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=5.3e-05 Score=69.56 Aligned_cols=436 Identities=14% Similarity=0.088 Sum_probs=266.5
Q ss_pred HHHHHHHHHHhhhch--hHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 43 AENLIILGDSLFRDR--EYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
+.++.-+|+.+-.+| +...++++++..+...|.+. -+...++.+|..++.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~----------------------------veart~LqLg~lL~~ 58 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL----------------------------VEARTHLQLGALLLR 58 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH----------------------------HHHHHHHHHHHHHHH
Confidence 446677788888888 99999999999887753211 123356677776654
Q ss_pred -cCCHHHHHHHHhcC----CCcccc----hhHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCcHH----HHHHHHHHcC
Q 008550 121 -LGETKAAIVEMEGI----PSKARN----LQMSLLMAKLYRNSR-HNRGAVACYKECLRHCPFFIE----AITALAELGA 186 (561)
Q Consensus 121 -~~~~~~A~~~l~~~----~~~~~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~ 186 (561)
..+++.|...+++. ...|.. ..+...++.+|.... .+..|...++++++.....+. ....|+++..
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 67888888888862 122332 345678899998877 789999999999988765553 3456778888
Q ss_pred CcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHH---HHHHHhCCCCHH-------HHHHHH
Q 008550 187 TPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELF---AELLQRFPNNIH-------ILLEMA 256 (561)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---~~~~~~~~~~~~-------~~~~la 256 (561)
..+++..+.+.+..-..............+.....+.+.....+..+...+. .++.+....|+. .+..+-
T Consensus 139 idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lq 218 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQ 218 (629)
T ss_pred hhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 8888888877654333322222111222222333455555555555544444 444444333321 122222
Q ss_pred H-HHHHhCCHHHHHHHHHH---HHhh-CCCC------------h-----------HHHHHHHHH--HHhcCCHhHHHHHH
Q 008550 257 K-VDAIIGKNDEAILNFEK---VRSI-DPYI------------M-----------TYMDEYAML--LKVKCDYSKLSKLV 306 (561)
Q Consensus 257 ~-~~~~~~~~~~A~~~~~~---~~~~-~~~~------------~-----------~~~~~l~~~--~~~~~~~~~A~~~~ 306 (561)
. .|...|+...+...+++ .++. .+.+ + .++..+..+ -...|-+++|.++-
T Consensus 219 l~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~t 298 (629)
T KOG2300|consen 219 LSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYT 298 (629)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHH
Confidence 2 23445666655555443 3332 1210 0 011111111 12456677777777
Q ss_pred HHHHhcCCC------CHHH--------HHHHHHHHHh-cCHhHHHHHHHHHHhc---cCC-------ChhHHHHHHHHHH
Q 008550 307 HDLLSIDPS------RPEV--------FVALSVLWER-KDERGALSYAEKSIRI---DER-------HIPGYIMKGNLLL 361 (561)
Q Consensus 307 ~~~~~~~~~------~~~~--------~~~l~~~~~~-~~~~~A~~~~~~~~~~---~~~-------~~~~~~~l~~~~~ 361 (561)
++++..... ...+ +-.+..+-.- |++.+|++....+... .|. .+.++..+|....
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Confidence 777654211 1111 2222333333 9999988887776654 333 2345677888888
Q ss_pred hcCChhHHHHHHHHhHHhCCCh--HH--HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDL--RS--YQGLVHSYLQFSKVKEALYAAREAMKAMPQS----------AKALKLVGDVH 427 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~--~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~ 427 (561)
..+.++.|...|..+.+..... .+ -.+++.+|.+.|+-+.-.+.++ .+.|.+ ..+++..|...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 8899999999999998876554 22 4578999999887654444333 344443 45667777777
Q ss_pred hhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCh--H--HHHHHHHH
Q 008550 428 ASNASGREKAKKFYESALRLEPGY------LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD--S--LHVKLAQV 494 (561)
Q Consensus 428 ~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~--~--~~~~la~~ 494 (561)
+.+ +++.+|...+.+.++..... .-.+..++.+....|+..++......++... |+. . ....+-.+
T Consensus 456 f~q-n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L 534 (629)
T KOG2300|consen 456 FKQ-NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDL 534 (629)
T ss_pred HHh-ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHH
Confidence 787 99999999999998875211 2245667888899999999999888887765 333 2 33456677
Q ss_pred HHHcCC--HHHHHHHHHH
Q 008550 495 FAATNM--LQEALSHYEA 510 (561)
Q Consensus 495 ~~~~g~--~~~A~~~~~~ 510 (561)
+...|+ .+...+.|.+
T Consensus 535 ~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 535 YQALGEKGNEMENEAFRK 552 (629)
T ss_pred HHHhCcchhhHHHHHHHH
Confidence 777787 5555555543
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.90 E-value=5.2e-08 Score=90.35 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 468 (561)
+...+...++++.|+..+++..+.+|+ +...++.++... ++..+|+..+.+++...|.+...+...+..+...|++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~-~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLM-NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 344455566777777777777766653 445567776666 6777777777777777777777777777777777888
Q ss_pred HHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 469 GDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
+.|+++.+++++..|++ ..|+.|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888777777 77888888888888888887666644
No 186
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.88 E-value=8.5e-08 Score=88.95 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=59.1
Q ss_pred hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHH
Q 008550 362 SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFY 441 (561)
Q Consensus 362 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~ 441 (561)
..++++.|+..+++..+.+|+. ...++.++...++..+|++.+.+++...|.+...+...+..+... ++++.|+.+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-~~~~lAL~iA 257 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-KKYELALEIA 257 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 3444555555555554444432 223444554555555555555555555555555555555555554 5555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 008550 442 ESALRLEPGYLGAALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 442 ~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
++++...|.+...|..|+.+|...|+++.|+..++
T Consensus 258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 258 KKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55555555555555555555555555555555444
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.87 E-value=9.1e-08 Score=81.70 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=94.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~ 291 (561)
.|..|..++..|+|..|...|...++..|++ +.+++.||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5677899999999999999999999999976 6899999999999999999999999999987776 588999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA 322 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 322 (561)
+...+|+.++|...++++++.+|+.+.+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999988766543
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=8.1e-08 Score=82.00 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHH
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLA 492 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la 492 (561)
.+..+.-+... |+|..|...|..-++..|++ +.+++.||.+++.+|++++|...|..+.+..|++ +.++.+|
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 44444444554 66666666666666666654 4567777777777777777777777777766654 6778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 493 QVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.+...+|+.++|...|+++++..|+.+.+......+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 888888888888888888888888877776665554
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.86 E-value=1.1e-08 Score=70.42 Aligned_cols=66 Identities=30% Similarity=0.356 Sum_probs=47.7
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666655543
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.85 E-value=1.3e-07 Score=71.78 Aligned_cols=95 Identities=19% Similarity=0.134 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCC---CHHHHHHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQ---SAKALKLV 423 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l 423 (561)
.+++.+|.++-..|+.++|+..|++++....+. .++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666667777777777777777776654332 34666677777777777777777777666666 55566666
Q ss_pred HHHHhhhcCChHHHHHHHHHHHH
Q 008550 424 GDVHASNASGREKAKKFYESALR 446 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~ 446 (561)
+.++... |+.++|+..+-.++.
T Consensus 82 Al~L~~~-gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNL-GRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHH
Confidence 6666665 667766666665553
No 191
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.84 E-value=0.00012 Score=69.68 Aligned_cols=359 Identities=13% Similarity=0.022 Sum_probs=231.3
Q ss_pred CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhh
Q 008550 135 PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSR 214 (561)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (561)
..-|.....|-..|..-.+.|..+.++.+|++++.--|.+...|..+.
T Consensus 73 ~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~-------------------------------- 120 (577)
T KOG1258|consen 73 SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL-------------------------------- 120 (577)
T ss_pred hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH--------------------------------
Confidence 344666666677777777777777777777777777776666665442
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN---IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+.+--..|+...-...|+++......+ ...|-..-..-..++++..-...|++.++..-.....++..-.
T Consensus 121 -------~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 121 -------AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFK 193 (577)
T ss_pred -------HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHH
Confidence 223335677777777777777765433 3455555555566777888888888877764333222222211
Q ss_pred HHHh------cCCHhHHHHHHHHHHhc--CCCC---HH------------------HHHHHHH-------HHHh-cCHhH
Q 008550 292 LLKV------KCDYSKLSKLVHDLLSI--DPSR---PE------------------VFVALSV-------LWER-KDERG 334 (561)
Q Consensus 292 ~~~~------~~~~~~A~~~~~~~~~~--~~~~---~~------------------~~~~l~~-------~~~~-~~~~~ 334 (561)
-+.. ....+++...-...... .+.. .+ ....+.. ++.. .....
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~ 273 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEE 273 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 1111 22334444444443321 0000 00 0001110 0111 11222
Q ss_pred HHHHHHHHHhc-----cCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHH
Q 008550 335 ALSYAEKSIRI-----DER---HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYA 405 (561)
Q Consensus 335 A~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 405 (561)
.+..++..++. .|- ....|......-...|+++...-.|++++-..... ..|...+......|+.+-|...
T Consensus 274 kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 274 KRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 22233333321 122 22456667777788999999999999988776665 6799999999999999999988
Q ss_pred HHHHHHHC-CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH---HHHHHHHhh
Q 008550 406 AREAMKAM-PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAV---SLLERYLKD 481 (561)
Q Consensus 406 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~---~~~~~~~~~ 481 (561)
+..+.+.. |..+.....-+..-... |++..|...+++..+..|+...+-...+....+.|+.+.+. .++.....-
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~-~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESN-GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 88888765 56666666667776666 99999999999999888999888888888899999999988 444444333
Q ss_pred CCCh----HHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 482 WADD----SLHVKLAQV-FAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 482 ~~~~----~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+. ..+...++. +.-.++.+.|...+.+++...|++...+..+..+....+
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3222 344555554 344588999999999999999999999999999887654
No 192
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.83 E-value=2.1e-09 Score=92.94 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=135.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (561)
.|.-|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|.. +.+..|..-++.++.++.....+|...+.+-..+|...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555555555555555555555555555555 55555555555555555555555555555556666666
Q ss_pred HHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHH-------------HHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCCh
Q 008550 368 AAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVK-------------EALYAAREAMKAMPQSAKALKLVGDVHASNASGR 434 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 434 (561)
+|.+.++.++.+.|...-+ -..+....... +|.+-..+++. ....|..+... |.+
T Consensus 183 EAKkD~E~vL~LEP~~~EL---kK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~--------~K~~G~~Fsk~-~~~ 250 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIEL---KKSLARINSLRERKIATKSTPGFTPARQGMIQILP--------IKKPGYKFSKK-AMR 250 (536)
T ss_pred HHHHhHHHHHhhCcccHHH---HHHHHHhcchHhhhHHhhcCCCCCccccchhhhcc--------ccCcchhhhhh-hcc
Confidence 6666666666665554111 00111111111 11111111111 11224445555 777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.++.++-.-+.....+.....+ +..+.+..+++.|+.-..+++...|.. ......+...--.|...++...++.++.
T Consensus 251 ~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~ 329 (536)
T KOG4648|consen 251 SVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVK 329 (536)
T ss_pred ccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheee
Confidence 77777776655544333333333 566777778888888888877776655 4445555555666788999999999999
Q ss_pred cCCccHHHHHHHHHHHHhc-cCCCCCC
Q 008550 514 INSQNEAAKKGLERLEKQM-KGVDPDA 539 (561)
Q Consensus 514 ~~p~~~~~~~~l~~l~~~~-~~~~~~~ 539 (561)
+.|.+..+...+.+....+ ...+|++
T Consensus 330 ~~P~~~~~~~~~sr~~~~ii~~~~~~~ 356 (536)
T KOG4648|consen 330 VAPAVETPKETETRKDTKIVPESDNEA 356 (536)
T ss_pred eccccccchhhhhhhcccccccccccc
Confidence 9999999998888887544 2334444
No 193
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.82 E-value=0.00016 Score=69.94 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=86.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHh
Q 008550 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLF 195 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~ 195 (561)
...+...+|.+|+.+++.+.........+-.++.-|...|+++.|.+.|.++=.. ..-..++.+.+.+..++
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHH
Confidence 4455678889999988887655555566677888888999999998888765211 11123445556666655
Q ss_pred hccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHH-------------HHH------HH----hCCCC-HHH
Q 008550 196 AQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELF-------------AEL------LQ----RFPNN-IHI 251 (561)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~-------------~~~------~~----~~~~~-~~~ 251 (561)
....+... .......+..++.-+-..|+|.+|.++| .+. ++ ..|+. .+.
T Consensus 812 kla~e~~~-------~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 812 KLAEECHG-------PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred HHHHHhcC-------chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 55444321 1122223344455555556655554433 321 11 12322 356
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 252 LLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 252 ~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
+..+|.-+...|+...|...|-++
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhh
Confidence 667788888888888887777554
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.80 E-value=1.7e-07 Score=71.04 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC---CHHHHHHH
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS---RPEVFVAL 323 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l 323 (561)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 355666666666666666666666666654333 345666666666666666666666666666665 44555555
Q ss_pred HHHHHh-cCHhHHHHHHHHHH
Q 008550 324 SVLWER-KDERGALSYAEKSI 343 (561)
Q Consensus 324 ~~~~~~-~~~~~A~~~~~~~~ 343 (561)
+.++.. |++++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555 66666666665554
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=1.1e-07 Score=76.05 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=62.4
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLG-----AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAA 497 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~ 497 (561)
|.-++.. |+|++|..-|..++.+.|..+. .+.+.|.++.+++.++.|+....++++++|.. .++...|.+|.+
T Consensus 102 GN~~F~n-gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKN-GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhc-ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4444444 5556666666665555554322 34445556666666666666666666666655 555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 498 TNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+..+++|+..|+++++.+|....+.....+|-.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 666666666666666666666666665555543
No 196
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=1.8e-05 Score=72.64 Aligned_cols=431 Identities=15% Similarity=0.054 Sum_probs=243.0
Q ss_pred HhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHH---HHhhcccCccccccchhhhc
Q 008550 12 IDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQ---ALQYYKIVPKQNSTSSRSSL 88 (561)
Q Consensus 12 ~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~---al~~~p~~~~~~~~~~~~~~ 88 (561)
+....|.+|+.+...+++.. ........+-.-++.-..+....+-++|+.++.- ++......+.-...-+.-.+
T Consensus 111 yh~~~~g~a~~~~~~lv~r~---e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~ 187 (696)
T KOG2471|consen 111 YHHEENGSAMQLSSNLVSRT---ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLL 187 (696)
T ss_pred eeHhhcchHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhc
Confidence 34556777777776665541 1111222233344455566666777777765433 33322111111000001111
Q ss_pred ccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCC-CcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 89 STSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIP-SKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 89 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
..+....+...+ .......++.....+.++...+..-+....+.+. ...+.+...++.+..++..|++.+|.+.+...
T Consensus 188 kt~s~~aAe~s~-~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s 266 (696)
T KOG2471|consen 188 KTLSPSAAERSF-STADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS 266 (696)
T ss_pred ccCCcchhcccc-hhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 111111111111 1111223456666777788888888887777743 33567788899999999999999999887654
Q ss_pred -HhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 008550 168 -LRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-- 244 (561)
Q Consensus 168 -l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 244 (561)
+...|.....-. +..+ + .| -..|.++++.|.|.-+..+|.++++.
T Consensus 267 ni~~~~g~~~T~q-~~~c-i---------------------------f~---NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 267 NIHKEAGGTITPQ-LSSC-I---------------------------FN---NNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred ccccccCccccch-hhhh-e---------------------------ee---cCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 222232110000 0000 0 00 11277777788888888888888741
Q ss_pred -------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC---HhHHHHH
Q 008550 245 -------FP---------NNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD---YSKLSKL 305 (561)
Q Consensus 245 -------~~---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~ 305 (561)
.| ..-++++..|..|...|++-.|.++|.+++.....+|..|.+++.++....+ .++-...
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 11 2357888899999999999999999999999988899999999988764321 1111111
Q ss_pred HHH--------------H--Hh--cCCCC------HHHHHHHHHHHHh---------cCHhHHHHHHHH-----------
Q 008550 306 VHD--------------L--LS--IDPSR------PEVFVALSVLWER---------KDERGALSYAEK----------- 341 (561)
Q Consensus 306 ~~~--------------~--~~--~~~~~------~~~~~~l~~~~~~---------~~~~~A~~~~~~----------- 341 (561)
..+ . ++ ..+.. |..-...+.+..+ .++..-...-..
T Consensus 395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence 000 0 00 00000 1111111111100 000000000000
Q ss_pred ---------------HHhccCCCh-----------hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHH-----H
Q 008550 342 ---------------SIRIDERHI-----------PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGL-----V 390 (561)
Q Consensus 342 ---------------~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-----~ 390 (561)
.+...|..+ .++...+.+-..+|+.-.|+..-.+.++...-..++..+ |
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAa 554 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAA 554 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 000001111 124556677788899999998888888765444444444 4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH-----------------------HCCC----------C-----HHHHHHHHHHHhhhcC
Q 008550 391 HSYLQFSKVKEALYAAREAMK-----------------------AMPQ----------S-----AKALKLVGDVHASNAS 432 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~-----------------------~~p~----------~-----~~~~~~l~~~~~~~~~ 432 (561)
.+++.+++..+|...+.-.+- ++|. . ...++++|..+.-+ |
T Consensus 555 EAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq-~ 633 (696)
T KOG2471|consen 555 EALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQ-G 633 (696)
T ss_pred HHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHh-c
Confidence 445677888888876654210 0110 0 34678999999998 9
Q ss_pred ChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEP--GYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
++++|..++..+..+-| .++.+......+-.++|+...|...+++.-
T Consensus 634 ~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 634 HHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred ccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 99999999999988877 556777777777789999999999888753
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.77 E-value=3.1e-08 Score=68.07 Aligned_cols=66 Identities=27% Similarity=0.228 Sum_probs=56.0
Q ss_pred HHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008550 260 AIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSV 325 (561)
Q Consensus 260 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 325 (561)
+..|++++|+..|++++..+|++..++..++.++...|++++|...+++++...|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567888999999999999999999999999999999999999999999998888888777776664
No 198
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.77 E-value=4e-07 Score=70.05 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh----HHHHHHH
Q 008550 420 LKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWADD----SLHVKLA 492 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~la 492 (561)
++.-|...... |+|++|++.|+.+....|.. ..+.+.++.+|++.|++++|+..+++.++++|.+ -+++..|
T Consensus 13 ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 13 LYQEAQEALQK-GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 33334444443 44444444444444433332 2234444444444444444444444444444433 3444444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 493 QVFAATNM---------------LQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 493 ~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
.++..... ..+|...|+++++..|++..+....
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 44444433 6788999999999999887765443
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.76 E-value=3.9e-06 Score=66.55 Aligned_cols=146 Identities=14% Similarity=0.065 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 264 KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 264 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
+++....-..+.+...|.. .-.+.++..+...|++.+|...|++++. +...++..+..+++.... +++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444444444443 3355666666677777777776666654 445556666666666666 666667666666
Q ss_pred HHhccCC--ChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 342 SIRIDER--HIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 342 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+.+|. .++....+|..+...|++.+|...|+.++...|+..+....+..+.++|+.++|...+....
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 6666653 35566667777777777777777777777777777666666666677776666665554443
No 200
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=0.00017 Score=66.37 Aligned_cols=370 Identities=16% Similarity=0.076 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHhcCCCc--cc--chhHHHHHHHHHH-hcCChhhHHHHHHHHHhcC---CCcHHHH
Q 008550 109 EVKYKIASCHFALG--ETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYR-NSRHNRGAVACYKECLRHC---PFFIEAI 178 (561)
Q Consensus 109 ~~~~~~a~~~~~~~--~~~~A~~~l~~~~~~--~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~l~~~---p~~~~~~ 178 (561)
.+...+|..+...| +...+++.++.+-.. |. .......+|.+++ -..+++.|...++++..+. |...+..
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 46778889888899 899999999985332 33 2345677887755 5889999999999997554 3322211
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCH----HHHH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN-DYKGGLELFAELLQRFPNNI----HILL 253 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~----~~~~ 253 (561)
+. ..-+.+.++.... .+..+...+.++++.....| ...+
T Consensus 88 f~------------------------------------a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllf 131 (629)
T KOG2300|consen 88 FQ------------------------------------AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLF 131 (629)
T ss_pred hH------------------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHH
Confidence 11 1222366666665 78888899999998766655 4566
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhh-CCCC---hHHHHHH--HHHHHhcCCHh---HHHHHHHHHHhcCCCCH-------
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSI-DPYI---MTYMDEY--AMLLKVKCDYS---KLSKLVHDLLSIDPSRP------- 317 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l--~~~~~~~~~~~---~A~~~~~~~~~~~~~~~------- 317 (561)
.++.++.-..++..|++.+.-.... ++.. ....+.+ +.++....+.. .+...+.++.+....++
T Consensus 132 QLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lk 211 (629)
T KOG2300|consen 132 QLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLK 211 (629)
T ss_pred HHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 7888888888999888875432221 1111 1122222 22333333333 34444444444333332
Q ss_pred HHHHHHHHHHHh--cCHhHHHHHHHH---HHhc-cCC-----------Ch---hHHHH----HHHHH-------HhcCCh
Q 008550 318 EVFVALSVLWER--KDERGALSYAEK---SIRI-DER-----------HI---PGYIM----KGNLL-------LSMKRP 366 (561)
Q Consensus 318 ~~~~~l~~~~~~--~~~~~A~~~~~~---~~~~-~~~-----------~~---~~~~~----l~~~~-------~~~~~~ 366 (561)
..+..+..+|.. |+...+...+++ .++. .+. ++ ..|.- -+.+| ...|-+
T Consensus 212 vFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~ 291 (629)
T KOG2300|consen 212 VFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYF 291 (629)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHH
Confidence 133344444443 666655544443 3321 111 00 00100 01111 234667
Q ss_pred hHHHHHHHHhHHhCCC-------hH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH---HCCC-------CHHHHH
Q 008550 367 EAAVIAFRGAQELRPD-------LR--------SYQGLVHSYLQFSKVKEALYAAREAMK---AMPQ-------SAKALK 421 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~-------~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~p~-------~~~~~~ 421 (561)
++|.++-++++..... .+ .+-.++.+-.-.|++.+|++....+.+ ..|. .+...+
T Consensus 292 ~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 292 KKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 7777777777654211 11 133556667778999999887776655 3444 245666
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--------HHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPG-YL--GAALALAELHVIEGRNGDAVSLLERYLKDWADD--------SLHVK 490 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~ 490 (561)
.+|...... +.++.|...|..+.+.... +. ....++|.+|.+.|+-+.-.+.++..-..+..+ .+++.
T Consensus 372 LlGlys~sv-~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v 450 (629)
T KOG2300|consen 372 LLGLYSHSV-NCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYV 450 (629)
T ss_pred HHhhHhhhc-chHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 777766666 8889999999988876432 22 244678899999887766666655543322111 46788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 491 LAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.|...+..|++.+|...+.+.++..
T Consensus 451 ~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 451 YGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhc
Confidence 8888889999999999999998875
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=74.79 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----H--HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----R--SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
+..-|.-++..|+|++|...|..++...|.. + .|.+.|.+.++++.++.|+..+.++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 3445777888999999999999999988874 2 267888899999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008550 427 HASNASGREKAKKFYESALRLEPGYLGAALALAELH 462 (561)
Q Consensus 427 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 462 (561)
|.++ ..+++|+..|++.++.+|....+.-..+++-
T Consensus 178 yek~-ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 178 YEKM-EKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHhh-hhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 9998 9999999999999999998876665555443
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.73 E-value=3e-07 Score=70.75 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=95.0
Q ss_pred hhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHH
Q 008550 39 PHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCH 118 (561)
Q Consensus 39 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 118 (561)
+......++..|...++.|+|++|++.|+.+....|..+ -...+.+.++.+|
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~----------------------------ya~qAqL~l~yay 57 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE----------------------------YAEQAQLDLAYAY 57 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc----------------------------ccHHHHHHHHHHH
Confidence 445566899999999999999999999999999987544 2246899999999
Q ss_pred HhcCCHHHHHHHHhc-CCC---cccchhHHHHHHHHHHhcCC---------------hhhHHHHHHHHHhcCCCcHHHHH
Q 008550 119 FALGETKAAIVEMEG-IPS---KARNLQMSLLMAKLYRNSRH---------------NRGAVACYKECLRHCPFFIEAIT 179 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~-~~~---~~~~~~~~~~l~~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~~~~ 179 (561)
.+.|++++|+..+++ +.. +|.-+-+++..|.++..+.. ..+|...|+++++..|++..+.-
T Consensus 58 y~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 58 YKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999998 433 35556678899999988876 88999999999999999876643
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=8.5e-08 Score=66.99 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=49.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 008550 459 AELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLER 527 (561)
Q Consensus 459 a~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 527 (561)
..++...+++++|++++++++..+|++ ..+..+|.++...|++.+|...|+++++..|+++.+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 456667777777777777777777766 667777777777777777777777777777777776655544
No 204
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.70 E-value=1.9e-06 Score=80.41 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=91.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 425 DVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 425 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
.+|.+..|+...|++++..++...|.... ...++|.++.+.|-..+|-..+.+++.+.... -.++.+|..+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33333359999999999999999887544 56789999999999999999999999987443 78899999999999999
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 503 EALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 503 ~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.|++.|+.|++++|+++.+...|..+.-
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999888876643
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.69 E-value=1.4e-07 Score=65.81 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEY 289 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 289 (561)
..++...+++++|+.++++++..+|+++..+..+|.++...|++.+|+..|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777776654443
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=4.6e-05 Score=64.23 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=149.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC------------------h-HHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI------------------M-TYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~-~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
....|...-.++.+....++|..-+...-+.+..+ | ......+.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35666677777778888888877776655544222 0 1223345555566666665554443
Q ss_pred HHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HH-
Q 008550 309 LLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RS- 385 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~- 385 (561)
+... ...+...... ...+..+..+++-+ ..+.+.+..++.-.|+|.-.+..+.+.++.+|.. ++
T Consensus 148 L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 3221 1111122222 23345555555543 3456677788888888888888888888887554 44
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAM------PQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 459 (561)
...+|.+..+.|+.+.|..+++.+-+.. .....+..+.+.++.-. +++..|...|.+++..+|.++.+..+.|
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~-nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQ-NNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecc-cchHHHHHHHhhccccCCCchhhhchHH
Confidence 6678888888888888888888554322 23345666677777776 8888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 460 ELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.|+...|+..+|++.++.++...|.+
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 88888888888888888888888865
No 207
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.66 E-value=4.2e-05 Score=73.80 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 119 FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 119 ~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
+..|+|+.|...++.+...|.....|..++.+.+..|+.--|.++|..+
T Consensus 455 id~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred cccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5679999999999999888988899999999999999998888888754
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.62 E-value=1.7e-06 Score=64.05 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=67.4
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-----SLHVKLAQVFA 496 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~la~~~~ 496 (561)
.-|.++... |+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|+.-+++++++..+. ..+...|.+|.
T Consensus 48 l~~valaE~-g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEA-GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhc-cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 345555554 777777777777777777777777777777777777777777777777765432 56777778888
Q ss_pred HcCCHHHHHHHHHHHHhcCCc
Q 008550 497 ATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~ 517 (561)
..|+-+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888888888777766543
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.5e-05 Score=65.90 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=87.6
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc----C-CC-hhHHHHHHHHHHhcCChh
Q 008550 295 VKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRID----E-RH-IPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~----~-~~-~~~~~~l~~~~~~~~~~~ 367 (561)
-.+++++|.++|.++- ..|.. ++|..|=..|.++-... . .+ ...+...+.+|. ..++.
T Consensus 26 g~~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChH
Confidence 3456677776666543 33333 44554444444443321 1 11 233444444443 34777
Q ss_pred HHHHHHHHhHHhCCCh-------HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCC
Q 008550 368 AAVIAFRGAQELRPDL-------RSYQGLVHSYLQF-SKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASG 433 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~ 433 (561)
+|+.++++++++..+. ..+..+|.+|... .++++|+.+|+++-+..... ...+...+..-... ++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l-eq 169 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL-EQ 169 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH-HH
Confidence 7777777777664432 1134556666544 56666666666665544322 12233333333343 66
Q ss_pred hHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 008550 434 REKAKKFYESALRLEPGYLG-------AALALAELHVIEGRNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (561)
|.+|+..|++.....-+++- ..+.-|.|++-..+.-.+...+++..+.+|.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 66666666665554333321 2233455555555555555555555555553
No 210
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00053 Score=68.99 Aligned_cols=254 Identities=16% Similarity=0.089 Sum_probs=127.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
|.+....+-|++|..+|.+.- -+..+... .....+..+.|.++-+++ +.+..|..+|....+.|...+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~----~n~~A~~V---Lie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD----MNVSAIQV---LIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc----ccHHHHHH---HHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHH
Confidence 566666677777777765431 11111111 112234444444444433 233455555555555555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc----------------------------cCCChhH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI----------------------------DERHIPG 352 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~----------------------------~~~~~~~ 352 (561)
|++.|-++ ++|..+........+ |.|++-++++..+.+. .|+.. -
T Consensus 1123 AieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A-~ 1196 (1666)
T KOG0985|consen 1123 AIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA-N 1196 (1666)
T ss_pred HHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-h
Confidence 55544322 344444444444444 5555555554444332 22211 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
....|.-++..|.|+.|.-+|... .-|..++..+..+|+|..|....+++ ++...|...+..+... +
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~-~ 1263 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK-E 1263 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch-h
Confidence 233444455555555554444332 12445555566666666666555543 3445555555555543 4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.+.-|.-+=-.. --+.+-+-.+...|...|-+++-+..++.++-+.... ..+..+|.+|.+- ++++-.++++-.
T Consensus 1264 EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1264 EFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred hhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 443332111000 0123445567777888888888888888887776655 5666666666554 466666665543
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=8.9e-05 Score=61.43 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHhccCCCh------hHHHHHHHHHHhc-CChhHHHHHHHHhHHhCCCh-------H
Q 008550 319 VFVALSVLWERKDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSM-KRPEAAVIAFRGAQELRPDL-------R 384 (561)
Q Consensus 319 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-------~ 384 (561)
.+...+.+|...++++|+.++++++++..+.. ..+..+|.+|... .++++|+.+|+++-+..... .
T Consensus 76 ~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 76 TYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 34444555555677777777777776654332 2344677777654 78888888888887764332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSA-------KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA 454 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 454 (561)
.+...+..-...++|.+|+..|+++....-+++ ..++.-|.|+... .+.-.+...+++-.+++|.....
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~-~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK-ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc-ccHHHHHHHHHHHHhcCCccccc
Confidence 456667777788899999999998877655543 3445667777776 78777888888888888876554
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00012 Score=61.78 Aligned_cols=241 Identities=14% Similarity=0.039 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHH
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRY 219 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (561)
....|...-.++.+...+++|..-+...-..+..+ .++. . .....|.....-..+...+
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pd--l~Ye----------------y---~p~iyp~rrGSmVPFsmR~ 126 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPD--LYYE----------------Y---YPHVYPGRRGSMVPFSMRI 126 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcc--eeee----------------e---ccccCCCCcCccccHHHHH
Confidence 44566666667777777777766655544443211 0100 0 0011122222233344555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
+.|.+....|+..+.+.-+...... ...+..........+..++.+++-+. .+.+.+..++.-.|.|
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEY 193 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhh
Confidence 6677777778887777666655321 11222222223333555666665433 3455666677777777
Q ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccC------CChhHHHHHHHHHHhcCChhHHHH
Q 008550 300 SKLSKLVHDLLSID-PSRPEVFVALSVLWER-KDERGALSYAEKSIRIDE------RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 300 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
.-....+.++++.+ |.+|.....+|.+..+ ||.+.|..+|++.-+... ....+..+.+.++.-.+++..|..
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence 77777777777766 4556666666776666 777666666665432211 111223333444444444444444
Q ss_pred HHHHhHHhCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 372 AFRGAQELRPDLR-SYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 372 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+.+.+..+|.+. +.++.+.|....|+..+|++.++.+++..|
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444444444432 233344444444444444444444444444
No 213
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.46 E-value=0.0027 Score=64.75 Aligned_cols=415 Identities=14% Similarity=0.052 Sum_probs=220.4
Q ss_pred CCCCchhhhHHHHHHHHHHhh-hchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCCh--HHH
Q 008550 34 NGETSPHLKAENLIILGDSLF-RDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINE--NEV 110 (561)
Q Consensus 34 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 110 (561)
....+|...+.+++.+|.+++ ...+++.|..++++++.+... + .+.+ ...
T Consensus 50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~--------------------------~~~d~k~~~ 102 (608)
T PF10345_consen 50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H--------------------------RLTDLKFRC 102 (608)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c--------------------------chHHHHHHH
Confidence 456688999999999999998 688999999999999888532 1 0111 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCc----ccchhHH---HHHHHHHHhcCChhhHHHHHHHHHhcC--CCcHHHHHHH
Q 008550 111 KYKIASCHFALGETKAAIVEMEGIPSK----ARNLQMS---LLMAKLYRNSRHNRGAVACYKECLRHC--PFFIEAITAL 181 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~~~~----~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l 181 (561)
.+.++.++.+.+... |...+++.... +.....| +.........+++..|+..++...... +.++.+....
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 566788888888777 88888873222 2222222 222444444589999999999988765 3444443322
Q ss_pred HHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C----CCHHH
Q 008550 182 AELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRF------P----NNIHI 251 (561)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~----~~~~~ 251 (561)
.+..+.+....+..+++++.++++.... | ....+
T Consensus 182 ------------------------------------~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~ 225 (608)
T PF10345_consen 182 ------------------------------------SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKA 225 (608)
T ss_pred ------------------------------------HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 1222444444454555555554443210 0 11222
Q ss_pred HHHHHH--HHHHhCCHHHHHHHHHHH---Hhh---CC--------------------------CC----------hHHHH
Q 008550 252 LLEMAK--VDAIIGKNDEAILNFEKV---RSI---DP--------------------------YI----------MTYMD 287 (561)
Q Consensus 252 ~~~la~--~~~~~~~~~~A~~~~~~~---~~~---~~--------------------------~~----------~~~~~ 287 (561)
+..+-. ++...|+++.+...++.. ++. .| .. .-++.
T Consensus 226 ~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~ 305 (608)
T PF10345_consen 226 LFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYF 305 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHH
Confidence 222222 233344444443332222 111 10 00 00122
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcC-------CCCH-------------------HHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 288 EYAMLLKVKCDYSKLSKLVHDLLSID-------PSRP-------------------EVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 288 ~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~-------------------~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
.-|......+..+.|.++++++++.- +..+ .+.+..+.+... +++..+.....
T Consensus 306 lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~ 385 (608)
T PF10345_consen 306 LSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELE 385 (608)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 22334444555556655555554321 1110 022233333344 88888888777
Q ss_pred HHHhcc---CC------ChhHHHHHHHHHHhcCChhHHHHHHH--------HhHHhCCChH----HHHHHHHHHHhcCCH
Q 008550 341 KSIRID---ER------HIPGYIMKGNLLLSMKRPEAAVIAFR--------GAQELRPDLR----SYQGLVHSYLQFSKV 399 (561)
Q Consensus 341 ~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~----~~~~l~~~~~~~~~~ 399 (561)
.+.... |. .+..++..|..+...|+.+.|...|. .+....+..+ +..++..++...+..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 386 FMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSR 465 (608)
T ss_pred HHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhccc
Confidence 666542 22 35667888888888999999999997 3333344443 234566666655543
Q ss_pred HH----HHHHHHHHHHHCCCCHH-----HHHHHHHHHhhh-cCChHHHHHHHHHHHHhC-C--CC----HHHHHHHHHHH
Q 008550 400 KE----ALYAAREAMKAMPQSAK-----ALKLVGDVHASN-ASGREKAKKFYESALRLE-P--GY----LGAALALAELH 462 (561)
Q Consensus 400 ~~----A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~-p--~~----~~~~~~la~~~ 462 (561)
.. +...++..-....+.+. ++..+-..+... .-...++...+..+++.. . ++ .-++..++..+
T Consensus 466 ~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~l 545 (608)
T PF10345_consen 466 DDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRL 545 (608)
T ss_pred chhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 33 33333322221111111 111111111110 122346777777766544 1 11 12344556666
Q ss_pred HHcCChHHHHHHHHHHHhhCC---Ch--HHH-----HHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 463 VIEGRNGDAVSLLERYLKDWA---DD--SLH-----VKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~---~~--~~~-----~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+ .|+..+.......+..... +. ..| ..++..+...|+.++|.....+.-.
T Consensus 546 f-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 546 F-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred H-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 6 7888877777666665432 22 344 3455667788999999888776543
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.45 E-value=0.0013 Score=60.46 Aligned_cols=430 Identities=13% Similarity=0.075 Sum_probs=218.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.+...|-++-+++++.+|.+.|.++.+...+.|.- -..++...+.....-+++.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~--------------------------lkeEvl~grilnAffl~nl 61 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFL--------------------------LKEEVLGGRILNAFFLNNL 61 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHH--------------------------HHHHHHhhHHHHHHHHhhH
Confidence 45567888999999999999999998764222200 0122333333333334455
Q ss_pred HHHHHHHhcCCC-cccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccC
Q 008550 125 KAAIVEMEGIPS-KARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSG 203 (561)
Q Consensus 125 ~~A~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 203 (561)
+.-...+-.+.. .|..+-..+..|.+..+.|.+.+|+..+......-......+.... +. .
T Consensus 62 d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n-i~-------~---------- 123 (549)
T PF07079_consen 62 DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN-IQ-------Q---------- 123 (549)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh-HH-------H----------
Confidence 444444333322 2566667777899999999999999998877665333322232210 00 0
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC----CCHHHHH----HHHHHHHHh----CCHHHHHH
Q 008550 204 RAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQR-FP----NNIHILL----EMAKVDAII----GKNDEAIL 270 (561)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~----~~~~~~~----~la~~~~~~----~~~~~A~~ 270 (561)
.-..++.-...|.+++..|.+.+++.++++++.. .| -+.+.+. .+|+.|+-. ...+-+..
T Consensus 124 -------l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 124 -------LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred -------HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 0122333445699999999999999999999864 33 2344433 455555421 12222222
Q ss_pred HH-------HHHHhhC--------CCChHHHHHHHHHH---------------------HhcCCHhHHHHHHHHHHhcCC
Q 008550 271 NF-------EKVRSID--------PYIMTYMDEYAMLL---------------------KVKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 271 ~~-------~~~~~~~--------~~~~~~~~~l~~~~---------------------~~~~~~~~A~~~~~~~~~~~~ 314 (561)
+| .++-..+ |.. .....+.... +-.-+++-.++.+..-+-.+|
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~pee-eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~ 275 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEE-ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP 275 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHH-HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh
Confidence 22 2221111 111 0000000000 011122222222222222222
Q ss_pred CCH-HHHHHHH----------------HHH---Hh-cCHhHHHHHHHHHHhccCCChhHHHH------HHHHHH-hcC--
Q 008550 315 SRP-EVFVALS----------------VLW---ER-KDERGALSYAEKSIRIDERHIPGYIM------KGNLLL-SMK-- 364 (561)
Q Consensus 315 ~~~-~~~~~l~----------------~~~---~~-~~~~~A~~~~~~~~~~~~~~~~~~~~------l~~~~~-~~~-- 364 (561)
... .....++ .++ .. ++...|-.++.-...++|+....... +-.+.. .-.
T Consensus 276 e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 276 EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 211 0000011 000 11 23334444444444444443311100 001111 000
Q ss_pred -ChhHHHHHHHHhHHhCCChH--H--HHHHHHHHHhcCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHH
Q 008550 365 -RPEAAVIAFRGAQELRPDLR--S--YQGLVHSYLQFSK-VKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAK 438 (561)
Q Consensus 365 -~~~~A~~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~ 438 (561)
+...=+..++.+-..+-+.. + ...-|.-+++.|. -++|+..++.++...|.+...-...-.... ..|.+|+
T Consensus 356 Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK---q~Y~qaL 432 (549)
T PF07079_consen 356 TKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK---QAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH---HHHHHHH
Confidence 01111222222222222221 1 2344666777776 888999999999988887654433222211 2233332
Q ss_pred H--HHHHHHH---------hCCC---CHHHHHHH--HHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHH
Q 008550 439 K--FYESALR---------LEPG---YLGAALAL--AELHVIEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 439 ~--~~~~a~~---------~~p~---~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 502 (561)
. .+.+.+. +.|- +.+.-..+ |..++..|+|.++.-+-.=..+..|++.++..+|.|.....+|.
T Consensus 433 s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHH
Confidence 2 2222222 1222 23333334 55678899999999888888899998899999999999999999
Q ss_pred HHHHHHHHHHhcCCc----cHHHHHHHHHHHHhc
Q 008550 503 EALSHYEAALRINSQ----NEAAKKGLERLEKQM 532 (561)
Q Consensus 503 ~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~ 532 (561)
+|..++... .|+ +..+...+..+++.+
T Consensus 513 eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 513 EAWEYLQKL---PPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHHHhC---CCchhhHHHHHHHHHHHHHHhh
Confidence 999998764 332 234455555555554
No 215
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.44 E-value=3e-06 Score=78.21 Aligned_cols=67 Identities=24% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHhhhcCChHHHHHHHHHHHHh
Q 008550 380 RPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKA---LKLVGDVHASNASGREKAKKFYESALRL 447 (561)
Q Consensus 380 ~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~A~~~~~~a~~~ 447 (561)
+|++ .+++++|.+|...|++++|+..|+++++++|++..+ |+++|.+|..+ |++++|+.++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 3444 468888888888888888888888888888888754 88888888887 8888888888888886
No 216
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0038 Score=63.24 Aligned_cols=238 Identities=14% Similarity=0.142 Sum_probs=151.0
Q ss_pred ChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCc-HHHHHHHH
Q 008550 106 NENEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHC--PFF-IEAITALA 182 (561)
Q Consensus 106 ~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~--p~~-~~~~~~l~ 182 (561)
+.+++|..+|.+.++.|...+|++.+-+ .+++..+.....+..+.|.|++-+.++.-+-+.. |.- .+..+.++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 4456899999999999999999887653 3556778888888889999999988887776543 322 22333333
Q ss_pred HHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 008550 183 ELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII 262 (561)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 262 (561)
... +..+.++.+.-- ... ..-.-|.-++..|.|+.|.-+|..+ .-|..++..+..+
T Consensus 1178 kt~-rl~elE~fi~gp------------N~A---~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1178 KTN-RLTELEEFIAGP------------NVA---NIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYL 1233 (1666)
T ss_pred Hhc-hHHHHHHHhcCC------------Cch---hHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHH
Confidence 221 111221111100 000 1112277788888888888777643 4566778888888
Q ss_pred CCHHHHHHHHHHHHhhC-----------C--------------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCH
Q 008550 263 GKNDEAILNFEKVRSID-----------P--------------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~-----------~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
|+|..|...-+++-... . -+.+-+..+...|...|-+++-+.+++.++.+..-+-
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 88888887776653211 0 0123345667778888888888888888888777777
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHhcc--C------CChhHHHHHHHHHHhcCChhHHHH
Q 008550 318 EVFVALSVLWERKDERGALSYAEKSIRID--E------RHIPGYIMKGNLLLSMKRPEAAVI 371 (561)
Q Consensus 318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--~------~~~~~~~~l~~~~~~~~~~~~A~~ 371 (561)
..+..+|.+|.+=++++-.+.++-....- | +....|..+..+|.+-..|+.|.-
T Consensus 1314 gmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 78888888887755665555554332210 1 123456667777777677766643
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.39 E-value=1.4e-05 Score=72.12 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIE 465 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 465 (561)
|..+.....+.+..+.|..+|.++.+..+....+|...|.+-....++.+.|..+|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 55555666666667777777777775555566777777777555435556688888888888788777777777777788
Q ss_pred CChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 008550 466 GRNGDAVSLLERYLKDWADD----SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLE 526 (561)
Q Consensus 466 g~~~~A~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 526 (561)
|+.+.|..+|++++..-+.. .+|......-...|+.+...+..+++.+..|++........
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 88888888888887776654 47777888888888888888888888888887655554433
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.37 E-value=5.1e-06 Score=66.14 Aligned_cols=107 Identities=22% Similarity=0.187 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASNASG----------REKAKKFYESALRLEPGYLGAALALAELHVIEGRN 468 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~ 468 (561)
++.|.+.++.....+|.+++.++..|.++..+ .+ +++|+.-|+.++.++|+..++++.+|.++...+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL-Aqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL-AQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 67888888888999999999999999888765 33 36677777888888999888998888888766531
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.|+. -.....+++|..+|++|...+|+|...+..|...
T Consensus 86 -------------~~d~---------~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 -------------TPDT---------AEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ----------------H---------HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -------------cCCh---------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1111 0111225667777777777777777666666544
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.37 E-value=2.1e-06 Score=79.22 Aligned_cols=70 Identities=24% Similarity=0.185 Sum_probs=61.7
Q ss_pred HCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 008550 412 AMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGA---ALALAELHVIEGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 412 ~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~ 482 (561)
.+|+++..++++|.++... |++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5788899999999999988 99999999999999999998854 8999999999999999999999998873
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.36 E-value=1.3e-05 Score=59.48 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=80.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLK 294 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~ 294 (561)
-.+|..+...|+.+.|++.|.+++...|..+.++...+..+.-+|+.++|+..+++++++..... .++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999999999999999999999999998865442 46777888888
Q ss_pred hcCCHhHHHHHHHHHHhcCC
Q 008550 295 VKCDYSKLSKLVHDLLSIDP 314 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~~~ 314 (561)
..|+.+.|..-|+.+.++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888887766544
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.34 E-value=0.00025 Score=69.08 Aligned_cols=172 Identities=17% Similarity=0.114 Sum_probs=128.9
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-H--------HHHHHHHHHH----hcCCHHHHHH
Q 008550 338 YAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-R--------SYQGLVHSYL----QFSKVKEALY 404 (561)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~--------~~~~l~~~~~----~~~~~~~A~~ 404 (561)
.|.-++.+-|. ....+..+.--.|+-+.++..+.++.+ .++. . .|+.....+. .....+.|.+
T Consensus 179 ~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 34445555443 233344444556899999999998876 3332 1 1122221122 3457888999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
++.......|+.+-.++..|.++... |+.++|++.|++++.....- .-.++.+++++..+++|++|...+.+..+
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99999999999999999999999998 99999999999988533322 23568899999999999999999999999
Q ss_pred hCCCh--HHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 008550 481 DWADD--SLHVKLAQVFAATNML-------QEALSHYEAALRI 514 (561)
Q Consensus 481 ~~~~~--~~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 514 (561)
.+.-+ -..+..|.|+...|+. ++|.+.|.++-.+
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 87765 5667789999999999 8899999888554
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.33 E-value=1.7e-06 Score=61.18 Aligned_cols=63 Identities=29% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 452 LGAALALAELHVIEGRNGDAVSLLERYLKDW---ADD-----SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 452 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
..++..+|.++...|++++|+.+|+++++.. ++. .++..+|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456667777777777777777777776542 111 46677778888888888888888777765
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=8e-05 Score=65.14 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=56.2
Q ss_pred cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-CCChHH----HHHHHHHHHhcCCHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRS----YQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~----~~~l~~~~~~~~~~~~A~~ 404 (561)
|++.+|...+++.++-.|.+.-++..--.+++.+|+...-...+++.+.. +++.+. .-.++..+...|-+++|.+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 55555555555555555555555554455555555555555555554443 333321 1123444445555555555
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHH
Q 008550 405 AAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYES 443 (561)
Q Consensus 405 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 443 (561)
..+++++++|.+..+....+.++... |++.++.+.+.+
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEMN-GRHKEGKEFMYK 234 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHhc-chhhhHHHHHHh
Confidence 55555555555555555555555544 555555554444
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.29 E-value=4.3e-05 Score=69.07 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 285 YMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 285 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. ++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455566666666667777777777776555566777777776444 555567777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhHHhCCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH
Q 008550 363 MKRPEAAVIAFRGAQELRPDLR----SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (561)
.|+.+.|..+|++++..-|... .|......-...|+.+...++.+++.+..|++....
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 7777788888887777665553 466677777777888888888888888777654433
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.29 E-value=9.3e-06 Score=64.67 Aligned_cols=85 Identities=22% Similarity=0.231 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcC----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC-
Q 008550 366 PEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFS----------KVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG- 433 (561)
Q Consensus 366 ~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~- 433 (561)
++.|.+.++.....+|.+ ..+++-|.++..+. .+++|+.-|++++.++|+...+++.+|.++... +.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~-A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL-AFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-Hhh
Confidence 678999999999999998 66888888887653 356778888889999999999999999999876 32
Q ss_pred ----------hHHHHHHHHHHHHhCCCC
Q 008550 434 ----------REKAKKFYESALRLEPGY 451 (561)
Q Consensus 434 ----------~~~A~~~~~~a~~~~p~~ 451 (561)
|++|..+|+++...+|++
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455555555555554
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.28 E-value=0.0032 Score=57.86 Aligned_cols=216 Identities=13% Similarity=0.040 Sum_probs=152.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh---
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--- 379 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 379 (561)
-.+++++...|-.+++|+........ ++-++|+...++.+...|. ....++.+|...++-+....+|+++.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 34677778888888999988888877 8888999888888766665 6667777777777766666666554321
Q ss_pred ---------------CCCh--H-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 380 ---------------RPDL--R-----------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 380 ---------------~~~~--~-----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
+|.. + +|......-.+..-.+.|..+|.++-+..-....++..-|.+-....
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 0100 0 12222222234444666777777765543233444444444333334
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSHY 508 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~ 508 (561)
|++.-|-..|+-.+...|+++......-..+...++-..|..+|+++++.-... .+|-.+...-..-|+...+...=
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 999999999999999999988877777888889999999999999888755433 78888888888889999999998
Q ss_pred HHHHhcCCccHHHH
Q 008550 509 EAALRINSQNEAAK 522 (561)
Q Consensus 509 ~~al~~~p~~~~~~ 522 (561)
++...+.|.....-
T Consensus 526 ~rf~e~~pQen~~e 539 (660)
T COG5107 526 ERFRELVPQENLIE 539 (660)
T ss_pred HHHHHHcCcHhHHH
Confidence 99989888764433
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.25 E-value=2.9e-06 Score=51.74 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.++..+|.+|...|++++|++.|+++++.+|+|+.++..++.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678899999999999999999999999999999999888753
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00056 Score=57.30 Aligned_cols=161 Identities=15% Similarity=0.057 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-----CC-H
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM------TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDP-----SR-P 317 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-~ 317 (561)
..+..-+.+|...+++++|..++.++.+-...+. .++...+.+......+.++..+++++....- +. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 4455556677777888888888888775444331 2344455555566666667666666654321 11 1
Q ss_pred HHHHHHHHHHHhcCHhHHHHHHHHHHhccCCCh------hHHHHHHHHHHhcCChhHHHHHHHHhHHhC------CCh-H
Q 008550 318 EVFVALSVLWERKDERGALSYAEKSIRIDERHI------PGYIMKGNLLLSMKRPEAAVIAFRGAQELR------PDL-R 384 (561)
Q Consensus 318 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~-~ 384 (561)
.++-.-+.+....++++|+.+|++++.+-..+. +.+...++++.+..++.+|-..+.+-.... ++. .
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 122223333333555566666665554322211 223344455555555555554444422211 111 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 385 SYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 385 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
.+.....++....+|..|..+++...
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCS 217 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchh
Confidence 23333444444445555555555543
No 229
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.24 E-value=3.1e-06 Score=51.64 Aligned_cols=43 Identities=28% Similarity=0.178 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH
Q 008550 141 LQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (561)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (561)
+.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999999988864
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00025 Score=59.33 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred HHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh------CCCChHHHHHHHHHH
Q 008550 226 IASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSI------DPYIMTYMDEYAMLL 293 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~ 293 (561)
...-+.++|+++|++++.....+ .+.+...++++.+..++.+|-..+.+-... .|+....+.....++
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~ 200 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVY 200 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHH
Confidence 34566777777777777643222 345556677888888888887777664332 222234455555666
Q ss_pred HhcCCHhHHHHHHHHHHhc----CCCCHHHHHHHHHHHHhcCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVHDLLSI----DPSRPEVFVALSVLWERKDERGALSYAE 340 (561)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (561)
....+|..|..+++...++ .|.+..+.-+|-..|..|+.++..+.+.
T Consensus 201 L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred hhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 6677888888888876554 2444556666666776677777666554
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.20 E-value=0.0048 Score=56.72 Aligned_cols=372 Identities=12% Similarity=0.054 Sum_probs=217.7
Q ss_pred HHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhH---HhhccccccCCC
Q 008550 129 VEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS---LFAQTPNRSGRA 205 (561)
Q Consensus 129 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 205 (561)
.+-+++..+|.+...|+.+...+..+|.+++-.+.|+++..-.|-.+.+|.....-....+++.. .+..+..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~----- 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK----- 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh-----
Confidence 34456788899999999999999999999999999999999999888888655333222333322 1221111
Q ss_pred CCCCCChhhHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------hCCHH
Q 008550 206 PFDHLDSSRWLHRYVEAQCCIASND----------YKGGLELFAELLQRFPNNIHILLEMAKVDAI---------IGKND 266 (561)
Q Consensus 206 ~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~ 266 (561)
....-..|..++ .|.+.-+ .-+|-+..-.+.-.+|.....|...+..+.. +.+.+
T Consensus 105 --k~l~ldLW~lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 105 --KSLNLDLWMLYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred --hhccHhHHHHHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 112233343332 1222211 1222222222333466666677666665432 33455
Q ss_pred HHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC-------------CHhHHHHHHHHHHhc-------CCCCHH-------
Q 008550 267 EAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC-------------DYSKLSKLVHDLLSI-------DPSRPE------- 318 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-------------~~~~A~~~~~~~~~~-------~~~~~~------- 318 (561)
.-...|.+++...-.+. ..|..+-..-...+ -|..|...+++...+ +|.+..
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 66677777777655554 33443333222211 134455555554332 121111
Q ss_pred ----HHHHHHHHHH------hcC-Hh-HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHH
Q 008550 319 ----VFVALSVLWE------RKD-ER-GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSY 386 (561)
Q Consensus 319 ----~~~~l~~~~~------~~~-~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 386 (561)
-|.+....-. .++ .. .---.+++++...|-.++.|+.........++-+.|+...++++...|.. .
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--~ 336 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--T 336 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--h
Confidence 1222221111 112 12 22234667777778888899998888899999999999999998888872 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH---------------CCCC---------------HHHHHHHHHHHhhhcCChHH
Q 008550 387 QGLVHSYLQFSKVKEALYAAREAMKA---------------MPQS---------------AKALKLVGDVHASNASGREK 436 (561)
Q Consensus 387 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~p~~---------------~~~~~~l~~~~~~~~~~~~~ 436 (561)
..++.+|...++-+....+|+++.+. ..++ .-+|+.+-....+. ...+.
T Consensus 337 ~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~-~Gl~a 415 (660)
T COG5107 337 MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK-RGLEA 415 (660)
T ss_pred eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH-hhHHH
Confidence 34556666555555555555554321 0011 12222233333333 55788
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhhCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 437 AKKFYESALRLEPGYLGAALALAEL-HVIEGRNGDAVSLLERYLKDWADDSLH-VKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
|...|-++-+..-...+++..-|.+ +...|++..|..+|+-.+...|++.++ ...-..+...|+-+.|...|++++..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 8888888766542333444444433 456799999999999999999988433 44556677889999999999977654
No 232
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=0.00015 Score=58.59 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA 120 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 120 (561)
...-+-+.++..++..|++++|+..++.++.... +.. -..-+..++|++.+.
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---------------------------lk~l~~lRLArvq~q 138 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---------------------------LKALAALRLARVQLQ 138 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---------------------------HHHHHHHHHHHHHHH
Confidence 3344667889999999999999999999986521 000 013478889999999
Q ss_pred cCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcH
Q 008550 121 LGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFI 175 (561)
Q Consensus 121 ~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 175 (561)
.|.+++|+..++.+......+......|.++...|+-.+|+..|++++...+...
T Consensus 139 ~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 139 QKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999877766677788999999999999999999999999975443
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.20 E-value=0.00015 Score=67.36 Aligned_cols=162 Identities=18% Similarity=0.162 Sum_probs=100.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC-cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT-PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 146 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
.+..-.-+..++..-++.-+++++.+|++..++..|++-... ..+.+..+.++.+. |..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkA--------------------gE~ 232 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKA--------------------GEA 232 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHH--------------------HHH
Confidence 344445577889999999999999999999999988653211 22222222222111 111
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHhcCCHh
Q 008550 225 CIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPY--IMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 300 (561)
.+......+....+-......+.+ +.+...+|.|..+.|+.++|++.++..++..|. +..++..+..++...+.+.
T Consensus 233 ~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 233 SLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 111111111111111111111111 445667899999999999999999999987775 3567888999999999999
Q ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 008550 301 KLSKLVHDLLSI-DPSRPEVFVALSVLW 327 (561)
Q Consensus 301 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 327 (561)
++..++.+.-+. -|+++...+..+.+.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 999888886443 355555555555443
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.20 E-value=1.9e-06 Score=60.96 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
..++..+|.++... |++++|+.+|++++++ .+++ ..++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYREL-GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44566666666665 6666666666666643 1111 335566777777777777777777776654
No 235
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.6e-05 Score=64.73 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=86.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
.|..++....|..|+..|.+++..+|..+..+...+.++++..+++.+.....++++++|+....++.+|.+......++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 37788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 008550 301 KLSKLVHDLLSI 312 (561)
Q Consensus 301 ~A~~~~~~~~~~ 312 (561)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
No 236
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.0023 Score=54.36 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=52.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh--cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh-HHHHHHHHhHHhCC
Q 008550 305 LVHDLLSIDPSRPEVFVALSVLWER--KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE-AAVIAFRGAQELRP 381 (561)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~ 381 (561)
+-..++..+|.+-.+|...-.++.. .+..+-++++...+.-+|++-.+|...-.+....|++. .-+++.+.++..+.
T Consensus 65 LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~Da 144 (318)
T KOG0530|consen 65 LTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDA 144 (318)
T ss_pred HHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccc
Confidence 3334444444444444444444333 34444444555555555555555444444444444444 34444444444433
Q ss_pred Ch-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHH
Q 008550 382 DL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKAL 420 (561)
Q Consensus 382 ~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 420 (561)
.+ .+|...-.+....+.++.-+.+..+.++.+-.+-.+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 33 3444444444444445555555555554444343333
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=0.00019 Score=66.71 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=116.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCH
Q 008550 254 EMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDE 332 (561)
Q Consensus 254 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 332 (561)
.+..-..+..++..-++.-.++++++|+..+++..++.- ...-..+|..+++++++.....- ........ |..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccch
Confidence 444445566777777777777777777777777666532 12235666666666665322110 00000000 111
Q ss_pred hHHHHHHHHHHhccCCC--hhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERH--IPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALYAAR 407 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 407 (561)
-+ .....+.+ ..+...+|.+..+.|+.++|++.++..++..|.. ....++..++...+.+.++...+.
T Consensus 247 ~e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 247 WE-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hh-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 11111111 3445678999999999999999999999887763 468899999999999999999888
Q ss_pred HHHHH-CCCCHHHHHHHHHHHhhhcCC---------------hHHHHHHHHHHHHhCCCCHHHHH
Q 008550 408 EAMKA-MPQSAKALKLVGDVHASNASG---------------REKAKKFYESALRLEPGYLGAAL 456 (561)
Q Consensus 408 ~~~~~-~p~~~~~~~~l~~~~~~~~~~---------------~~~A~~~~~~a~~~~p~~~~~~~ 456 (561)
+.-+. -|+.+...+..+.+..+..++ -..|++.+.+|++.+|..+..+.
T Consensus 320 kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 86443 355566555555443332122 13467888888888888765543
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.1e-05 Score=65.22 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHHhCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCC
Q 008550 355 MKGNLLLSMKRPEAAVIAFRGAQELRPDLRS-YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASG 433 (561)
Q Consensus 355 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 433 (561)
.-|..++...+|..|+.+|.+++.++|...+ |.+.+.++++.++++.+.....+++++.|+....++.+|.+.... ..
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s-~~ 93 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS-KG 93 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh-cc
Confidence 3466666677777777777777777777744 667777777777777777777777777777777777777777776 77
Q ss_pred hHHHHHHHHHHHHh
Q 008550 434 REKAKKFYESALRL 447 (561)
Q Consensus 434 ~~~A~~~~~~a~~~ 447 (561)
+++|+..+.++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 77777777777554
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00015 Score=63.48 Aligned_cols=156 Identities=13% Similarity=0.026 Sum_probs=129.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CCCCh---HHHHHHHHHHHhcC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSI-DPYIM---TYMDEYAMLLKVKC 297 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~ 297 (561)
+......|++.+|....+++++..|.+.-++..--.+++..|+...-...+++++.. +|+-| .+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 566678899999999999999999999988888888999999999999999999877 66653 44556788889999
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCC----hhHHHHHHHHHHhcCChhHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERH----IPGYIMKGNLLLSMKRPEAAVIA 372 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~ 372 (561)
-+++|.+..+++++++|.+..+....+.++.. +++.++.++..+.-..-... .--|...+.++...+.|+.|+.+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999988 99999999887653322111 12355678888889999999999
Q ss_pred HHHhH
Q 008550 373 FRGAQ 377 (561)
Q Consensus 373 ~~~~~ 377 (561)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98754
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.10 E-value=0.00061 Score=62.61 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=82.1
Q ss_pred HHHHHHHh---cCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHhhh--------cCChHHHHHHHHHHHHhCCCCHHHH
Q 008550 388 GLVHSYLQ---FSKVKEALYAARE-AMKAMPQSAKALKLVGDVHASN--------ASGREKAKKFYESALRLEPGYLGAA 455 (561)
Q Consensus 388 ~l~~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~~~~l~~~~~~~--------~~~~~~A~~~~~~a~~~~p~~~~~~ 455 (561)
..|.++.+ .|+.++|+..+.. .....+.+++.+..+|.+|... ....++|+.+|.++.+.+|+ ...-
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~G 262 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSG 262 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccch
Confidence 34444444 5555555555555 2333444555555555555432 12357788888888887754 3444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH--------hhC---CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYL--------KDW---ADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~--------~~~---~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
.+++.++...|...+....+++.. +.. +.. -....++.+..-.|++++|.+++++++++.|..-...
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 566666666665433332222221 111 111 3446677788889999999999999999998876655
Q ss_pred HHHHHHH
Q 008550 523 KGLERLE 529 (561)
Q Consensus 523 ~~l~~l~ 529 (561)
..+..+.
T Consensus 343 St~~ni~ 349 (374)
T PF13281_consen 343 STLENIK 349 (374)
T ss_pred HHHHHHH
Confidence 5554443
No 241
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.07 E-value=0.012 Score=56.44 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HhcCCHhHHHHHHHHHH
Q 008550 232 KGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLL-KVKCDYSKLSKLVHDLL 310 (561)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 310 (561)
+.+...|...+...|-....|...|..-.+.|..+.+.+.|++++.--|.+...|..+.... ...|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 56677777888888888888888999999999999999999999999898888777655443 34567777778888887
Q ss_pred hcCCCC---HHHHHHHHHHHHh-cCHhHHHHHHHHHHhcc
Q 008550 311 SIDPSR---PEVFVALSVLWER-KDERGALSYAEKSIRID 346 (561)
Q Consensus 311 ~~~~~~---~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~ 346 (561)
.....+ ...|-..-..... +++..-...|++.++..
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP 181 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP 181 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh
Confidence 765544 3345444444444 77777777777776643
No 242
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.05 E-value=5.3e-06 Score=46.92 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 008550 441 YESALRLEPGYLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 441 ~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~ 472 (561)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777777777777764
No 243
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=98.05 E-value=0.0096 Score=62.21 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=84.9
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHh----c
Q 008550 46 LIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFA----L 121 (561)
Q Consensus 46 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~ 121 (561)
.....+++...+.|++|+..|+++-...|+-..- .++.+..|...+. .
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~ 529 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG----------------------------YEAQFRLGITLLEKASEQ 529 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc----------------------------hHHHHHhhHHHHHHHHhc
Confidence 3455678889999999999999999887754432 3455555555543 2
Q ss_pred ---CCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH
Q 008550 122 ---GETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (561)
Q Consensus 122 ---~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 178 (561)
..+++|+..|+.+...+..|--|...|.+|.+.|++++-+++|.-+++..|..++..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 530 GDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 358999999999988888888999999999999999999999999999999887644
No 244
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=0.017 Score=57.91 Aligned_cols=246 Identities=15% Similarity=0.068 Sum_probs=156.3
Q ss_pred ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC
Q 008550 228 SNDYKGGLELFAELLQR-----FPNNIHILLEMAKVDAIIG-----KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC 297 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 297 (561)
..+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.... ++..|+.+|.++-.. .++.+.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC
Confidence 36788888888888661 1124567788899888743 678899999988776 45677788888887665
Q ss_pred ---CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CChhH
Q 008550 298 ---DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK-----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSM-KRPEA 368 (561)
Q Consensus 298 ---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 368 (561)
+...|..+|..+... .+..+.+.++.++..| +...|..++.++...+ .+.+...++..+... +.+..
T Consensus 340 ~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 567899999888764 4677888888888773 6778999999988877 445555555544332 77777
Q ss_pred HHHHHHHhHHhCCCh----HHHHHHHH-HHHh----cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHH
Q 008550 369 AVIAFRGAQELRPDL----RSYQGLVH-SYLQ----FSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREK 436 (561)
Q Consensus 369 A~~~~~~~~~~~~~~----~~~~~l~~-~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~ 436 (561)
+...+....+..-.. .++...-. .... ..+...+...+.++.. +.++.+...+|.+|..- ..+++.
T Consensus 416 ~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHH
Confidence 766665554443222 11111111 1111 1134445555555433 34566777777776642 235677
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C--ChHHHHHHHHHHHhhCCC
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIE-G--RNGDAVSLLERYLKDWAD 484 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~-g--~~~~A~~~~~~~~~~~~~ 484 (561)
|...|.++.... ....+++|.++..- | ....|..++.++.+....
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 777777776665 66777777776542 1 146666666666655443
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.04 E-value=0.0043 Score=57.17 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHh---cCCHhHHHHHHHH-HHhcCCCCHHH
Q 008550 248 NIHILLEMAKVDAIIGKNDEAILNFEKVRSI----DPYIMTYMDEYAMLLKV---KCDYSKLSKLVHD-LLSIDPSRPEV 319 (561)
Q Consensus 248 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~-~~~~~~~~~~~ 319 (561)
++++...+-.+|....+|+.-++..+.+-.. -+..+.+...+|.++.+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3566677777899999999999999887776 45566778889999998 8999999999988 56667788999
Q ss_pred HHHHHHHHHh----------cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 008550 320 FVALSVLWER----------KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKR 365 (561)
Q Consensus 320 ~~~l~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 365 (561)
+..+|.+|.. ...++|+.+|.++...+|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 9999988843 2356788888888887754 3334455555555554
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0011 Score=57.73 Aligned_cols=147 Identities=22% Similarity=0.210 Sum_probs=94.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
.-+..|......|++.+|...|..++...|.+. ++...++.|++..|+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-------------------------------~~~~~la~~~l~~g~~ 184 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENS-------------------------------EAKLLLAECLLAAGDV 184 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-------------------------------hHHHHHHHHHHHcCCh
Confidence 456677788999999999999999999986543 5788899999999999
Q ss_pred HHHHHHHhcCCCcccchhHHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhcccccc
Q 008550 125 KAAIVEMEGIPSKARNLQMSLLMA--KLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRS 202 (561)
Q Consensus 125 ~~A~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 202 (561)
+.|..++..++....+....-..+ .++.+.....+. ..+++.+..+|++.++.+.+
T Consensus 185 e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~l--------------------- 242 (304)
T COG3118 185 EAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALAL--------------------- 242 (304)
T ss_pred HHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHH---------------------
Confidence 999999999876643333322222 233333333322 23444556667666666555
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhC
Q 008550 203 GRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP--NNIHILLEMAKVDAIIG 263 (561)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~ 263 (561)
|..+...|+.++|.+.+-.+++.+. .+..+...+-.++...|
T Consensus 243 -------------------A~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 243 -------------------ADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred -------------------HHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5556666666666666666665533 23344444444444444
No 247
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.01 E-value=0.00034 Score=65.99 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH
Q 008550 211 DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE 288 (561)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 288 (561)
.+..|......+..+..+|+..+|..++..++-..|.. ..++..+|.++.+.|...+|--++..++...|....-++.
T Consensus 209 ~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~ 288 (886)
T KOG4507|consen 209 NTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYT 288 (886)
T ss_pred CchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCcccccccee
Confidence 34556655555666677899999999999998876544 3467788999999999999988888888877777777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 289 YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 289 l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
++.++.+.+.+......|..+.+..|..
T Consensus 289 l~~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 289 LGNIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence 9999999998888888888887777765
No 248
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.96 E-value=0.059 Score=60.42 Aligned_cols=365 Identities=13% Similarity=0.047 Sum_probs=194.2
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHHH
Q 008550 48 ILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKAA 127 (561)
Q Consensus 48 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 127 (561)
.+|.+-++.|.|.+|+.++++- .. .+.. ..-....++.+-.+|...++++.-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~---~ek~------------------------~~~~e~l~fllq~lY~~i~dpDgV 1439 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RS---TEKE------------------------KETEEALYFLLQNLYGSIHDPDGV 1439 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-cc---ccch------------------------hHHHHHHHHHHHHHHHhcCCcchh
Confidence 7899999999999999999985 11 1100 001123444455599999999887
Q ss_pred HHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCC
Q 008550 128 IVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPF 207 (561)
Q Consensus 128 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (561)
.-........| ............|++..|..+|+++++.+|+....+.+........+........+.......
T Consensus 1440 ~Gv~~~r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-- 1513 (2382)
T KOG0890|consen 1440 EGVSARRFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-- 1513 (2382)
T ss_pred hhHHHHhhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc--
Confidence 66655311111 233344456678999999999999999999977666655554444555444443332221111
Q ss_pred CCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhhCC--
Q 008550 208 DHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDE-----AILNFEKVRSIDP-- 280 (561)
Q Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-----A~~~~~~~~~~~~-- 280 (561)
......|...-.+| ..+.++++.-..... ..+..+..+.. +|.+.....+-+. .++..+..+ ..|
T Consensus 1514 -se~~~~~~s~~~ea--aW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~ls 1585 (2382)
T KOG0890|consen 1514 -SEEVDELNSLGVEA--AWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLS 1585 (2382)
T ss_pred -CHHHHHHHHHHHHH--Hhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHH
Confidence 11222333332222 356677776665544 22222222221 5555554433221 111111110 111
Q ss_pred ------CChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHh-cCHhHHHHHHHHHHh---c
Q 008550 281 ------YIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR-----PEVFVALSVLWER-KDERGALSYAEKSIR---I 345 (561)
Q Consensus 281 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-~~~~~A~~~~~~~~~---~ 345 (561)
.....+..+..++... +.+.. .+......+++ .+-|.+....-.. .+..+-+-.+++++- .
T Consensus 1586 a~s~~~Sy~~~Y~~~~kLH~l~-el~~~---~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~ 1661 (2382)
T KOG0890|consen 1586 ACSIEGSYVRSYEILMKLHLLL-ELENS---IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRM 1661 (2382)
T ss_pred HhhccchHHHHHHHHHHHHHHH-HHHHH---HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhc
Confidence 0011111111111110 11111 11111112221 2233333322222 333444444444332 2
Q ss_pred c----CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCC----
Q 008550 346 D----ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQS---- 416 (561)
Q Consensus 346 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~---- 416 (561)
+ ..-.+.|...|++....|.++.|...+-.+.+.. ...++...|..++..|+-..|+..+++.++.+ |+.
T Consensus 1662 ~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~ 1740 (2382)
T KOG0890|consen 1662 RSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY 1740 (2382)
T ss_pred cccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc
Confidence 2 2235778888888888888888888887777665 33567778888888899889998888888644 221
Q ss_pred ------------HHHHHHHHHHHhhhcCCh--HHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 417 ------------AKALKLVGDVHASNASGR--EKAKKFYESALRLEPGYLGAALALAE 460 (561)
Q Consensus 417 ------------~~~~~~l~~~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~la~ 460 (561)
..+...++...... +++ ..-+++|..+.+..|....-++.+|.
T Consensus 1741 ~~~p~~~n~~i~~~~~L~~~~~~~es-~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1741 TDTPQSVNLLIFKKAKLKITKYLEES-GNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 22334444444444 554 45677888888888866666666663
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.96 E-value=1.4e-05 Score=45.60 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
+.+|+.+|.+++.+|+|++|+..|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 358999999999999999999999999999875
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.0022 Score=52.12 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHCCCCHH---HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHH
Q 008550 401 EALYAAREAMKAMPQSAK---ALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSL 474 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 474 (561)
+.....++....+|.+.. ....++..+... +++++|+..++.++....+. .-+-.+++.+....|.+++|+..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~-~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEA-NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455555566666655433 345677778887 99999999999888654332 23557899999999999999998
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHH
Q 008550 475 LERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEA 520 (561)
Q Consensus 475 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 520 (561)
++......-.+......|+++...|+..+|+..|++++..+++.+.
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 8875443333356778899999999999999999999999855443
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=2.3e-05 Score=44.72 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIV 76 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (561)
+++++.+|.+++..|+|++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999998753
No 252
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.91 E-value=0.038 Score=56.51 Aligned_cols=406 Identities=15% Similarity=0.098 Sum_probs=218.7
Q ss_pred HHHHHHHH-hhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccc
Q 008550 5 KEQITALI-DQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTS 83 (561)
Q Consensus 5 ~~~~~~~~-~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 83 (561)
++.+..++ ...+++.|....+.....+.. ..-.+.+....+.++.++++.+... |....++.++.....+
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~------ 133 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG------ 133 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC------
Confidence 34455555 667899999999988887765 2235677888889999999999888 9999999998752211
Q ss_pred hhhhcccCCCCCCcccccccCCChHHHHHHH--HHHHHhcCCHHHHHHHHhcCCCc---ccchhHH----HHHHHHHHhc
Q 008550 84 SRSSLSTSNRSSSPNSFNVSAINENEVKYKI--ASCHFALGETKAAIVEMEGIPSK---ARNLQMS----LLMAKLYRNS 154 (561)
Q Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~----~~l~~~~~~~ 154 (561)
.......+.+ ....+..+++..|+..++.+... ..++.+. +..+.+....
T Consensus 134 ---------------------~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~ 192 (608)
T PF10345_consen 134 ---------------------HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR 192 (608)
T ss_pred ---------------------chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC
Confidence 0111222222 33333448999999999885322 2333322 3446777778
Q ss_pred CChhhHHHHHHHHHhcCC----------CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 155 RHNRGAVACYKECLRHCP----------FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 155 ~~~~~A~~~~~~~l~~~p----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
+..++++...+++..... ....++..+. .-.+
T Consensus 193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll--------------------------------------~l~~ 234 (608)
T PF10345_consen 193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL--------------------------------------DLCC 234 (608)
T ss_pred CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH--------------------------------------HHHH
Confidence 888888888888743221 1222332222 2233
Q ss_pred HHHccCHHHHHHHHHHHH---Hh---CC---C---C------------------------------HHHHHHHHHHHHHh
Q 008550 225 CIASNDYKGGLELFAELL---QR---FP---N---N------------------------------IHILLEMAKVDAII 262 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~---~~---~~---~---~------------------------------~~~~~~la~~~~~~ 262 (561)
....|+++.+...++++- +. .| . + .-++..-|......
T Consensus 235 ~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~ 314 (608)
T PF10345_consen 235 SLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYK 314 (608)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhc
Confidence 334444433333322221 10 10 0 0 01122224444445
Q ss_pred CCHHHHHHHHHHHHhhC-------CCC-------------------hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC---
Q 008550 263 GKNDEAILNFEKVRSID-------PYI-------------------MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID--- 313 (561)
Q Consensus 263 ~~~~~A~~~~~~~~~~~-------~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 313 (561)
+..++|.+++.++++.- |.. ....+..+.+..-.+++..|......+....
T Consensus 315 ~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 394 (608)
T PF10345_consen 315 GSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS 394 (608)
T ss_pred cCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC
Confidence 55556666655555421 100 0123444556667778877777777665432
Q ss_pred CC------CHHHHHHHHHHHHh-cCHhHHHHHHH--------HHHhccCCCh---hHHHHHHHHHHhcCChhH----HHH
Q 008550 314 PS------RPEVFVALSVLWER-KDERGALSYAE--------KSIRIDERHI---PGYIMKGNLLLSMKRPEA----AVI 371 (561)
Q Consensus 314 ~~------~~~~~~~l~~~~~~-~~~~~A~~~~~--------~~~~~~~~~~---~~~~~l~~~~~~~~~~~~----A~~ 371 (561)
|. .+..++..|..+.. |+.+.|...|. .+....+.+. -+..++..++...+.-.. ...
T Consensus 395 ~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~ 474 (608)
T PF10345_consen 395 PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNE 474 (608)
T ss_pred ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHH
Confidence 22 25567777777777 88888888887 2223333222 122344455544443322 333
Q ss_pred HHHHhHHh---CCCh--HHHH-HHHHHHH--hcCCHHHHHHHHHHHHHHC-C---C---CHHHHHHHHHHHhhhcCChHH
Q 008550 372 AFRGAQEL---RPDL--RSYQ-GLVHSYL--QFSKVKEALYAAREAMKAM-P---Q---SAKALKLVGDVHASNASGREK 436 (561)
Q Consensus 372 ~~~~~~~~---~~~~--~~~~-~l~~~~~--~~~~~~~A~~~~~~~~~~~-p---~---~~~~~~~l~~~~~~~~~~~~~ 436 (561)
.++..-.. .|+. ..+. .+..++. ..-...++...+..+++.. . + ...++..++..++ . |+..+
T Consensus 475 l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~-~~~~e 552 (608)
T PF10345_consen 475 LLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-E-GDVGE 552 (608)
T ss_pred HHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-c-CCHHH
Confidence 33332211 1211 2222 2222221 1223346666666666544 1 1 1335566777776 3 78777
Q ss_pred HHHHHHHHHHhCCCC---HH-HH-----HHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 437 AKKFYESALRLEPGY---LG-AA-----LALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 437 A~~~~~~a~~~~p~~---~~-~~-----~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.......+....+.. .. .| ..+...+...|+.++|.....+...
T Consensus 553 ~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 553 QAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666666666543332 33 33 2355668888999999888776543
No 253
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.90 E-value=2e-05 Score=72.67 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=100.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+...+..+.|+.|+..|.++++.+|+.+..+-..+.++.+.+++..|+..+.++++.+|....+++..|......+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
|...|+......|+++.+...+..+-.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999988877766543
No 254
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.026 Score=63.04 Aligned_cols=363 Identities=16% Similarity=0.159 Sum_probs=208.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCc--cc--chhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCc
Q 008550 113 KIASCHFALGETKAAIVEMEGIPSK--AR--NLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATP 188 (561)
Q Consensus 113 ~~a~~~~~~~~~~~A~~~l~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 188 (561)
.+|.+-.+.|.|.+|+-++++-... +. ....++.+-.+|...++++.-..+... ...+|.-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl-------------- 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSL-------------- 1452 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccH--------------
Confidence 5677777788888888888773211 11 122334444577777777665555443 1112210
Q ss_pred ccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q 008550 189 KDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEA 268 (561)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 268 (561)
..+-......|++..|..+|+++++.+|+....+...-......|.++..
T Consensus 1453 ------------------------------~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1453 ------------------------------YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred ------------------------------HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHH
Confidence 11133444569999999999999999999887777777788888999999
Q ss_pred HHHHHHHHhhCCCChHHHHHHHH-HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-c--CHhHHHHHHHHHHh
Q 008550 269 ILNFEKVRSIDPYIMTYMDEYAM-LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-K--DERGALSYAEKSIR 344 (561)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~~~~A~~~~~~~~~ 344 (561)
+...+-.....++...-+..++. +.+..++++.-..+.. ..+.....+.. +|.+... . |.-.-.+..+.+.+
T Consensus 1503 i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~ 1578 (2382)
T KOG0890|consen 1503 ILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRE 1578 (2382)
T ss_pred HhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHH
Confidence 88887776666666555554443 4477778777666554 22222222221 5555544 1 11111111111111
Q ss_pred --ccC--------CChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 345 --IDE--------RHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL------RSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 345 --~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
..| .....+-.+..++.. .+.+..++.+ ....++. ..|.+....-....+..+-+-.+++
T Consensus 1579 ~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-~el~~~~~~l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RR 1654 (2382)
T KOG0890|consen 1579 LVIENLSACSIEGSYVRSYEILMKLHLL-LELENSIEEL---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRR 1654 (2382)
T ss_pred HhhhhHHHhhccchHHHHHHHHHHHHHH-HHHHHHHHHh---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHH
Confidence 111 001111111111111 0111111111 1111211 1233332222222223444444444
Q ss_pred HHH---HCC----CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 409 AMK---AMP----QSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 409 ~~~---~~p----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
++- .+| .-.+.|...|.+.... |.++.|...+-+|.+.. -+.+....|..++..|+...|+..+++.++.
T Consensus 1655 s~l~~~~~~~~~~~~ge~wLqsAriaR~a-G~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1655 SMLDLRMRSNLKSRLGECWLQSARIARLA-GHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhccccccchhHHHHHHHHHHHHhc-ccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 432 222 3377888999998887 99999999998888776 4678889999999999999999999999865
Q ss_pred C-CC----------h-------HHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 482 W-AD----------D-------SLHVKLAQVFAATNML--QEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 482 ~-~~----------~-------~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
+ |+ . .+...++......|+. .+-++.|..+.+..|.....++.++..+.+
T Consensus 1732 ~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1732 NFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred hcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 4 22 1 2345555666666664 345688999999999887777777755543
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00073 Score=56.60 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHHHHH--------hcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCC
Q 008550 140 NLQMSLLMAKLYRNSRHNRGAVACYKECL--------RHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLD 211 (561)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (561)
...++..-|.-+++.|+|.+|...|+.++ +..|..++. ..|...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW-~eLdk~--------------------------- 228 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW-LELDKM--------------------------- 228 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHHHh---------------------------
Confidence 34566778888899999999999998886 334555543 233111
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHH
Q 008550 212 SSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTY 285 (561)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 285 (561)
..-.++..+.|+...|+|-++++....++...|.+..+++..|.++...=+.++|...|.++++++|.-..+
T Consensus 229 --~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 229 --ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 011223348899999999999999999999999999999999999999999999999999999999876544
No 256
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=3e-05 Score=44.24 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 357778888888888888888888888888764
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.87 E-value=0.0077 Score=57.27 Aligned_cols=285 Identities=15% Similarity=0.035 Sum_probs=138.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC--------CChHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRF-PNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDP--------YIMTYMDEYAML 292 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~ 292 (561)
+.+..+.|+++. +.+.+... .+.+...+..+......|+++++..+.+++...-- ......+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 667778888887 33333332 23346666667777788888888888877765321 111111111112
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCHh--HHHHHHHHHHhc----cCCChhHHHHHHHHHHh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSR----PEVFVALSVLWERKDER--GALSYAEKSIRI----DERHIPGYIMKGNLLLS 362 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~--~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 362 (561)
+....+.+++..+....... +.. ...|...-.... .+++ +-+-.++..+-. .......+...+.+..+
T Consensus 81 lq~L~Elee~~~~~~~~~~~-~~~~~~l~~~W~~Rl~~~~-~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN-PQDLKSLLKRWRSRLPNMQ-DDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 22223333333333211100 000 001111110000 1111 111111121111 33445677888888888
Q ss_pred cCChhHHHHHHHHhHHhCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-CCCH--HHHHHHHHHHh-hhcCC
Q 008550 363 MKRPEAAVIAFRGAQELRPD-----LRSYQGLVHSYLQFSKVKEALYAAREAMKAM-PQSA--KALKLVGDVHA-SNASG 433 (561)
Q Consensus 363 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~--~~~~~l~~~~~-~~~~~ 433 (561)
.|.++.|...+.++....+. ....+..+.+....|+..+|+..++..+... .... .....+..... .....
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI 238 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence 88888888888887775432 2346667888888888888888888777621 1110 00000000000 00000
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcC-------
Q 008550 434 REKAKKFYESALRLEPGYLGAALALAELHVIE------GRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATN------- 499 (561)
Q Consensus 434 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g------- 499 (561)
.......... .....++..+|...... +..+++...|..+++..|+. ..|+.+|..+...=
T Consensus 239 ~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~ 313 (352)
T PF02259_consen 239 SSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREK 313 (352)
T ss_pred cccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 0000000000 00123444455554444 66666677777777666655 55655555554331
Q ss_pred ----------CHHHHHHHHHHHHhcCCc
Q 008550 500 ----------MLQEALSHYEAALRINSQ 517 (561)
Q Consensus 500 ----------~~~~A~~~~~~al~~~p~ 517 (561)
-...|+..|-+++...|+
T Consensus 314 ~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 314 EESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 124477888888888776
No 258
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0079 Score=51.25 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=70.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh-HHHHH
Q 008550 228 SNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG-KNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS-KLSKL 305 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~ 305 (561)
......|+++...++..+|.+-.+|...-.++..++ +..+-++++..+++.+|.+..+|...-.+....|++. .-+..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 344556666666666666666555555444444332 3455555666666666666665555555555555554 44555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHH
Q 008550 306 VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIM 355 (561)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~ 355 (561)
.+.++..+..+-.+|...-.+... ++++.-+.+..+.++.+-.+-.+|..
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 555555555555555555555555 55555555555555555444444433
No 259
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.86 E-value=3.4e-05 Score=71.24 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=90.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQ 502 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~ 502 (561)
+.-.... +.++.|+..|.++++++|++...+.+.+..+.+.+++..|+.-+.++++.+|.. ..|+..|.+....+++.
T Consensus 11 an~~l~~-~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKD-KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred Hhhhccc-chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3444444 788888888888888888888888888888888888888888888888888876 78888888888999999
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 503 EALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 503 ~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
+|...|+....+.|+++.+...+..+.....
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888776543
No 260
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00048 Score=57.63 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=74.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--------hCCCCH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQ--------RFPNNI----------HILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~--------~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....|+-++..|+|.+|...|..++. ..|.++ ..+.++++|+...|+|-++++....++..+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 44568999999999999999998873 245544 345566777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH
Q 008550 280 PYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE 318 (561)
Q Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 318 (561)
|.+..+++..|......=+..+|..-|.++++.+|.-..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 777777777777777777777777777777777765543
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.85 E-value=0.0013 Score=64.11 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=80.9
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKL 302 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 302 (561)
...+.+.|.+++....+..|+.+-.++..|+++...|+.++|++.|++++.....-+ -.++.++.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 346678899999999999999999999999999999999999999998875332222 3456677777777777777
Q ss_pred HHHHHHHHhcCCCCHHHH-HHHHHHHHh-cCH-------hHHHHHHHHH
Q 008550 303 SKLVHDLLSIDPSRPEVF-VALSVLWER-KDE-------RGALSYAEKS 342 (561)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~~~-------~~A~~~~~~~ 342 (561)
..++.++.+.+.-+...| +..|.++.. ++. ++|...+.++
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777777776554443333 333444444 555 4555555444
No 262
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.85 E-value=2.1e-05 Score=44.48 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAI 269 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 269 (561)
|+++++.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555566666666666666666666655554
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.84 E-value=0.012 Score=55.99 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 486 SLHVKLAQVFAAT------NMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 486 ~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++..+|...... +..+++...|..+++++|+...++..++.....+-
T Consensus 253 ~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 253 KAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 5677888888777 89999999999999999999999999999887654
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0018 Score=56.46 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
+.-....|++.+|...|..++...|.+..+...++.++...|+.+.|...+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 44445555555555555555555555555555555555555555555555444
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.83 E-value=4.2e-05 Score=43.67 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+++.+|.++...|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 357777888888888888888888888888765
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.79 E-value=0.026 Score=51.16 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=107.5
Q ss_pred HHhcCChhhHHHHHHHHHhcC-CCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHcc
Q 008550 151 YRNSRHNRGAVACYKECLRHC-PFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASN 229 (561)
Q Consensus 151 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (561)
...+|+++.|..++.++-... ..++.....++.++ |.-|......+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~---------------------------------yn~G~~l~~~~ 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC---------------------------------YNIGKSLLSKK 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH---------------------------------HHHHHHHHHcC
Confidence 346889999999999987655 44455555554443 34488888888
Q ss_pred -CHHHHHHHHHHHHHhC----C---CC-------HHHHHHHHHHHHHhCCHH---HHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 230 -DYKGGLELFAELLQRF----P---NN-------IHILLEMAKVDAIIGKND---EAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 230 -~~~~A~~~~~~~~~~~----~---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+++.|..+++++.+.. + .. ..++..++.+|...+.++ +|...++.+-...|+.+..+...-.
T Consensus 50 ~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~ 129 (278)
T PF08631_consen 50 DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE 129 (278)
T ss_pred CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999999988762 1 11 346677888888877654 4556666666677887777766666
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHH-HHHH--HHhcCHhHHHHHHHHHHh
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVA-LSVL--WERKDERGALSYAEKSIR 344 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~--~~~~~~~~A~~~~~~~~~ 344 (561)
++...++.+.+.+.+.+++...+-....+.. +..+ +.......+...+...+.
T Consensus 130 il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 130 ILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLL 185 (278)
T ss_pred HHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 7777888999999998888765522222222 2222 122455566676666654
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.68 E-value=0.078 Score=53.31 Aligned_cols=277 Identities=17% Similarity=0.076 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhh-----CCCChHHHHHHHHHHHhcC---
Q 008550 231 YKGGLELFAELLQRFPNNIHILLEMAKVDAII-----GKNDEAILNFEKVRSI-----DPYIMTYMDEYAMLLKVKC--- 297 (561)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~--- 297 (561)
...|..+++.+.+. .+..+...+|.+|..- .+.+.|+.+|+.+.+. .-..+.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677888777554 4567778888887764 5899999999998771 1125567888999998853
Q ss_pred --CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CHhHHHHHHHHHHhccCCChhHHHHHHHHHHhc----CChh
Q 008550 298 --DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERK----DERGALSYAEKSIRIDERHIPGYIMKGNLLLSM----KRPE 367 (561)
Q Consensus 298 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 367 (561)
+...|..++.++... .++...+.+|.++..| +...|..+|..+... .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 677899999988775 4677888899988883 467999999998754 4677888888888643 4788
Q ss_pred HHHHHHHHhHHhCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHhhh---cCChHHHHH
Q 008550 368 AAVIAFRGAQELRPDLRSYQGLVHSYL-QFSKVKEALYAAREAMKAMPQSA----KALKLVGDVHASN---ASGREKAKK 439 (561)
Q Consensus 368 ~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~---~~~~~~A~~ 439 (561)
.|..++.++.+..+ ..+...++..+. ..+.++.+...+....+..-..+ ..+.......... ..+...+..
T Consensus 382 ~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN-PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHHccC-hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999999988873 223333333332 22777777666655544322221 1111111111111 123456666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHc-C--CHHHHHHHHHHHH
Q 008550 440 FYESALRLEPGYLGAALALAELHVIE----GRNGDAVSLLERYLKDWADDSLHVKLAQVFAAT-N--MLQEALSHYEAAL 512 (561)
Q Consensus 440 ~~~~a~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~al 512 (561)
.+.++.. ..++.+...+|.+|+.- .+++.|...|.++.... ....+++|.++..- | ....|..+|.++.
T Consensus 461 ~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 6666543 45677888888888765 35888999999888777 77778888877542 1 2678888888887
Q ss_pred hcCCcc
Q 008550 513 RINSQN 518 (561)
Q Consensus 513 ~~~p~~ 518 (561)
..++..
T Consensus 537 ~~~~~~ 542 (552)
T KOG1550|consen 537 EEDSRA 542 (552)
T ss_pred hcCchh
Confidence 766544
No 268
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0023 Score=51.71 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQRFPNN----------------------IHILLEMAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
..|......++...++..+.+++...... ..+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 34566667788889999999988754322 12233344445555555555555555555
Q ss_pred hCCCChHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008550 278 IDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDL 309 (561)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 309 (561)
.+|.+..++..+..++...|+..+|+..|+++
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555555555555555555555555555544
No 269
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00046 Score=60.53 Aligned_cols=116 Identities=23% Similarity=0.269 Sum_probs=97.9
Q ss_pred CCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHH
Q 008550 36 ETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA 115 (561)
Q Consensus 36 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a 115 (561)
.-.+...++.+-.-|+-||+.++|..|+..|.+.+.....+|+- ...++...|
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl---------------------------navLY~NRA 126 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL---------------------------NAVLYTNRA 126 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH---------------------------HHHHHhhHH
Confidence 33567788889999999999999999999999999987544421 245788899
Q ss_pred HHHHhcCCHHHHHHHHhcC-CCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH
Q 008550 116 SCHFALGETKAAIVEMEGI-PSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI 178 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 178 (561)
.|.+..|+|..|+.-+... ...|.+..+++.=+.+++.+.++.+|+..++..+..+.....+.
T Consensus 127 Aa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 127 AAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999884 55699999999999999999999999999999988776544433
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.57 E-value=0.12 Score=52.50 Aligned_cols=228 Identities=13% Similarity=0.014 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh--
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPS--R-------PEVFVALSVLWER-KDERGALSYAEKSIRIDERHI-- 350 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~-- 350 (561)
|......+.......++.+|..++.++...-|. . .+..-..+.+... |++++|.+..+.++..-|.+.
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455667788888899999999998887665433 1 1233344455555 999999999999998877653
Q ss_pred ---hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh-----HH--HHHHHHHHHhcCCH--HHHHHHHHHH----HHHCC
Q 008550 351 ---PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL-----RS--YQGLVHSYLQFSKV--KEALYAAREA----MKAMP 414 (561)
Q Consensus 351 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~--~~~l~~~~~~~~~~--~~A~~~~~~~----~~~~p 414 (561)
.+....|.+..-.|++++|..+...+.+..... .. ....+.++..+|+. .+....+... +...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456778899999999999999999888774332 22 34557778888833 3333333332 22334
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHH----hCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh--
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALR----LEPGYLG---AALALAELHVIEGRNGDAVSLLERYLKDWADD-- 485 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-- 485 (561)
-........+.++... -+++.+..-..+.++ ..|.... +...++.+.+..|+.++|...+........++
T Consensus 575 ~~~f~~~~r~~ll~~~-~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 575 RHEFLVRIRAQLLRAW-LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred cchhHHHHHHHHHHHH-HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 3333333333333333 234444444444443 3333322 23478999999999999999998877654322
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 486 ------SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 486 ------~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
.++..........|+.+.|..+..+.
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 23333344556679999998888773
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.55 E-value=0.00015 Score=41.28 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
.+|+.+|.+|..+|++++|.++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357778888888888888888888888887753
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.54 E-value=0.0031 Score=50.97 Aligned_cols=60 Identities=27% Similarity=0.334 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008550 419 ALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYL 479 (561)
Q Consensus 419 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 479 (561)
+...++..+... |++++|+..+++++..+|.+..++..+..++...|+..+|+..|++..
T Consensus 64 ~~~~l~~~~~~~-~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEA-GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444445554 666666666666666666666666666666666666666666665543
No 273
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.54 E-value=0.085 Score=55.44 Aligned_cols=329 Identities=13% Similarity=-0.029 Sum_probs=160.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHH
Q 008550 146 LMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCC 225 (561)
Q Consensus 146 ~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (561)
....++...+.|+.|+..|++.-...|+..+.+..+-++++.. +.++...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 529 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITL------------------------------LEKASEQ 529 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHH------------------------------HHHHHhc
Confidence 3456777888999999999999999998877665554443210 0001111
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcC-----CHh
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKC-----DYS 300 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 300 (561)
-....+++|+..|+++ ...|.-|--|...|.+|.+.|++++-++++..+++..|.+|..-...-.+..++. +-.
T Consensus 530 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (932)
T PRK13184 530 GDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRR 608 (932)
T ss_pred CChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 1112345555555543 2233444445555556666666666666666666655555432111111111000 001
Q ss_pred HHHHHHHHHHhcCCCC-----------------------------HHHH---HHHHHHHHhcCHhHHHHHHHHHHhccCC
Q 008550 301 KLSKLVHDLLSIDPSR-----------------------------PEVF---VALSVLWERKDERGALSYAEKSIRIDER 348 (561)
Q Consensus 301 ~A~~~~~~~~~~~~~~-----------------------------~~~~---~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 348 (561)
.|....--++...|.. .... +.+-..+..|..---...++++....|-
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (932)
T PRK13184 609 EALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDY 688 (932)
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccH
Confidence 1111111111111111 1111 1111122225544555666666665543
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----CCChH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 349 HIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----RPDLR---------SYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
.+....-.+...+|.++-+.......-+. .|..- .+..-..+......++++.+.+.. ..|
T Consensus 689 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 763 (932)
T PRK13184 689 --RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDP 763 (932)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCH
Confidence 55555555667788887665554443321 11111 122223333444456666553332 222
Q ss_pred CCHHHH-HHHHHHHhhhcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CChH
Q 008550 415 QSAKAL-KLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAVSLLERYLKDW---ADDS 486 (561)
Q Consensus 415 ~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 486 (561)
...... ...+.-.... ++.+. +..+.+.+...+. +........+.|....++++|-+.+...-... ..+.
T Consensus 764 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (932)
T PRK13184 764 TLILYAFDLFAIQALLD-EEGES-IIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSE 841 (932)
T ss_pred HHHHHHHHHHHHHHHHh-ccchH-HHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccch
Confidence 222111 1111111111 22222 2222222222221 12234456778888899999998885432211 2227
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al 512 (561)
++...|..+...++-+-|..+|..+.
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (932)
T PRK13184 842 AFVLYGCYLALTEDREAAKAHFSGCR 867 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHHhhcc
Confidence 88888988899999999999998887
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.52 E-value=0.054 Score=49.81 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=91.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh----cC
Q 008550 226 IASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII----GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV----KC 297 (561)
Q Consensus 226 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 297 (561)
...+++..+...+.++... .++.....++.+|..- .+..+|..+|..+ ....++.+.+.+|.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776552 2235666677766653 3567777777743 344566677777777766 34
Q ss_pred CHhHHHHHHHHHHhcCCCC-HHHHHHHHHHHHhc--------CHhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cC
Q 008550 298 DYSKLSKLVHDLLSIDPSR-PEVFVALSVLWERK--------DERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MK 364 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 364 (561)
+..+|..+|+++....-.. ......++.++..| +...|...|.++-... ++.+...+|.+|.. ..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCc
Confidence 7777777777777654333 23366666666553 2224555555554443 44555555555533 22
Q ss_pred ChhHHHHHHHHhHHhCCChHHHHHHH
Q 008550 365 RPEAAVIAFRGAQELRPDLRSYQGLV 390 (561)
Q Consensus 365 ~~~~A~~~~~~~~~~~~~~~~~~~l~ 390 (561)
++.+|..+|.++.+... ..+.+.++
T Consensus 206 d~~~A~~wy~~Aa~~g~-~~a~~~~~ 230 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD-GAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 45555555555555444 33344444
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.51 E-value=0.062 Score=49.42 Aligned_cols=128 Identities=20% Similarity=0.157 Sum_probs=63.3
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCChhHHHHHHHHhHHhCCC--hHHHHHHHHHHHhcC-------C
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLS----MKRPEAAVIAFRGAQELRPD--LRSYQGLVHSYLQFS-------K 398 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~-------~ 398 (561)
..+|..+|..+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+.... ..+...++.+|..-+ +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 444555555222 22334445555555544 22555555555555544222 122334444443321 1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 008550 399 VKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRLEPGYLGAALALAELHVIEG 466 (561)
Q Consensus 399 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g 466 (561)
...|...|.++.... ++.+...+|.+|..- ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 235566666555543 566666666666541 1255667777777666554 55566666 555444
No 276
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0028 Score=55.86 Aligned_cols=93 Identities=20% Similarity=0.088 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQS----AKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
-|.-|++.++|..|...|.+.+...-.+ ...|.+.+.+.... |+|..|+....+++..+|.+..+++.-|.|++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3444455555555555555555433222 33444455555544 555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHHHhhC
Q 008550 465 EGRNGDAVSLLERYLKDW 482 (561)
Q Consensus 465 ~g~~~~A~~~~~~~~~~~ 482 (561)
+.++.+|..+++..+..+
T Consensus 166 Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 555555555555544443
No 277
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.011 Score=54.71 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH
Q 008550 236 ELFAELLQRFPNNIHILLEMAKVDAIIGK------------NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS 303 (561)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 303 (561)
.-|++.++.+|.+..+|..+....-..-. .+.-+.++++|++.+|++...+..+..+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999988876554422 456678889999999988888888888888888888888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHh----cCHhHHHHHHHHHHh
Q 008550 304 KLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIR 344 (561)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~ 344 (561)
+.+++++..+|+++..|...-..... -.+......|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 88999999999988888766654433 245677777777665
No 278
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.43 E-value=0.00025 Score=40.32 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
++++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999873
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.41 E-value=0.095 Score=47.55 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh-cCHh---HHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhC
Q 008550 319 VFVALSVLWER-KDER---GALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELR 380 (561)
Q Consensus 319 ~~~~l~~~~~~-~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 380 (561)
++..++.++.. +.++ +|....+.+....|+.+..+...-.++.+.++.+.+.+.+.+++...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 44555555555 4333 45555555555566666666555555555667777777777766553
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.39 E-value=0.0002 Score=63.10 Aligned_cols=91 Identities=15% Similarity=0.006 Sum_probs=60.2
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVS 473 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 473 (561)
+..|.++.|+..|..++.++|.....+...+.++.+. ++...|++.+..+++++|+...-+-..+.....+|++.+|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl-~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKL-KKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeec-cCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 4456666666666666666666666666666666666 666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCh
Q 008550 474 LLERYLKDWADD 485 (561)
Q Consensus 474 ~~~~~~~~~~~~ 485 (561)
.+..+.+++-+.
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666666655443
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.38 E-value=0.21 Score=50.88 Aligned_cols=302 Identities=14% Similarity=0.051 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFAL 121 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 121 (561)
..+.+..-+..+...|...+|+..--.|-+- . --.+..-+.+.-+...
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-----~---------------------------~aa~lle~~~~~L~~~ 393 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDP-----E---------------------------MAADLLEQLEWQLFNG 393 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCCCH-----H---------------------------HHHHHHHhhhhhhhcc
Confidence 3446666666677778888887654332111 0 0012334445566777
Q ss_pred CCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCc--HHHHHHHHHHcCCcccHhHHhhc
Q 008550 122 GETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFF--IEAITALAELGATPKDIISLFAQ 197 (561)
Q Consensus 122 ~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~ 197 (561)
++..--....+.++.. -.++..-...+.......++.+|..++.++...-|.. ...-..++
T Consensus 394 ~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~a--------------- 458 (894)
T COG2909 394 SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLA--------------- 458 (894)
T ss_pred cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHH---------------
Confidence 7777777777777644 4566777788888888999999999988886554431 11111111
Q ss_pred cccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Q 008550 198 TPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAKVDAIIGKNDEAILNF 272 (561)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~ 272 (561)
. ..-+.|.+....|+.+.|.+..+.++..-|.+ ..+...+|.+..-.|++++|..+.
T Consensus 459 ----------------e--~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~ 520 (894)
T COG2909 459 ----------------E--FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALM 520 (894)
T ss_pred ----------------H--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHH
Confidence 0 11234888899999999999999999987755 456677889999999999999999
Q ss_pred HHHHhhCCC----Ch--HHHHHHHHHHHhcCCHh--HHHHHHHHH----HhcCCCCHHHHHHHHHHHHh-cCHhHHHHHH
Q 008550 273 EKVRSIDPY----IM--TYMDEYAMLLKVKCDYS--KLSKLVHDL----LSIDPSRPEVFVALSVLWER-KDERGALSYA 339 (561)
Q Consensus 273 ~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~--~A~~~~~~~----~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~ 339 (561)
..+.+.... .. .+....+.++..+|+.. +....+... +...|.+.-.....+.++.. -+++.+..-.
T Consensus 521 ~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ea 600 (894)
T COG2909 521 QQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEA 600 (894)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHh
Confidence 888876322 22 33445567778888332 222223222 12223222222222222222 2233333333
Q ss_pred HHHHh----ccCCChhH---HHHHHHHHHhcCChhHHHHHHHHhHHhC--CChH----H--HHHHHHHHHhcCCHHHHHH
Q 008550 340 EKSIR----IDERHIPG---YIMKGNLLLSMKRPEAAVIAFRGAQELR--PDLR----S--YQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 340 ~~~~~----~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~--~~~l~~~~~~~~~~~~A~~ 404 (561)
...++ ..|..... .+.++.+.+..|++++|...+......- +... + ...........|+..++..
T Consensus 601 r~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 601 RLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred hhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 33322 22322211 2356777777777777777766655542 2111 1 1122223345566666666
Q ss_pred HHHH
Q 008550 405 AARE 408 (561)
Q Consensus 405 ~~~~ 408 (561)
...+
T Consensus 681 ~l~~ 684 (894)
T COG2909 681 WLLK 684 (894)
T ss_pred HHHh
Confidence 5555
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.36 E-value=0.034 Score=52.09 Aligned_cols=152 Identities=12% Similarity=-0.039 Sum_probs=91.4
Q ss_pred CcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCC-CCCCChhh
Q 008550 136 SKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAP-FDHLDSSR 214 (561)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 214 (561)
..|...++++.++.++..+|+.+.|..++++++-.........+.........| ..+.+ ....+..-
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g------------~~rL~~~~~eNR~f 102 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSG------------NCRLDYRRPENRQF 102 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC------------ccccCCccccchHH
Confidence 458899999999999999999999999999997433211111110000000000 01111 11234555
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhhCCC-----ChHHHH
Q 008550 215 WLHRYVEAQCCIASNDYKGGLELFAELLQRFPN-NIHIL-LEMAKVDAIIGKNDEAILNFEKVRSIDPY-----IMTYMD 287 (561)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~ 287 (561)
|...+.....+.+.|-+..|.++.+-++..+|. ||-.. +.+-....+.++++--+..++........ -|...+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 666777788888899999999999999999887 66444 34444455667777666666654432111 123444
Q ss_pred HHHHHHHhcCCH
Q 008550 288 EYAMLLKVKCDY 299 (561)
Q Consensus 288 ~l~~~~~~~~~~ 299 (561)
..+.++...++.
T Consensus 183 S~aLA~~~l~~~ 194 (360)
T PF04910_consen 183 SIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHHhcCc
Confidence 555555555554
No 283
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.0016 Score=40.92 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.++.+|..+.++|++++|..+.+.+++..|+|..+......+...+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999888888776653
No 284
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.16 Score=47.90 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008550 107 ENEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRH-NRGAVACYKECLRHCPFFIEAITALAEL 184 (561)
Q Consensus 107 ~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 184 (561)
+..++........+.+.+.+--.++.+ +...|.+++.|..-+.-.+..+. .+.|...|.++++.+|+++..|....++
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 455777777777777778888888888 46679999999998888777665 9999999999999999999988765444
No 285
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.27 E-value=0.0059 Score=46.20 Aligned_cols=83 Identities=19% Similarity=0.136 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-hCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHH
Q 008550 451 YLGAALALAELHVIEGR---NGDAVSLLERYLK-DWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKG 524 (561)
Q Consensus 451 ~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 524 (561)
.....+++++++....+ ..+.+.+++..++ ..|.. +..+.++..+.+.|+|++++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35678899999988765 5678899999997 44544 788899999999999999999999999999999999998
Q ss_pred HHHHHHhcc
Q 008550 525 LERLEKQMK 533 (561)
Q Consensus 525 l~~l~~~~~ 533 (561)
...++..+.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 888887764
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.18 E-value=0.035 Score=52.06 Aligned_cols=168 Identities=16% Similarity=0.076 Sum_probs=86.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHH-
Q 008550 240 ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPE- 318 (561)
Q Consensus 240 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 318 (561)
..++.+|-+.+++..++.++..+|+...|.+.+++++-.........+.....-...|. + ++--..+.+..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~-----rL~~~~~eNR~f 102 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---C-----RLDYRRPENRQF 102 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---c-----ccCCccccchHH
Confidence 34577899999999999999999999999888888864311000000000000000000 0 00000112222
Q ss_pred --HHHHHHHHHHh-cCHhHHHHHHHHHHhccCC-ChhHH-HHHHHHHHhcCChhHHHHHHHHhHHhCC-C----h-HHHH
Q 008550 319 --VFVALSVLWER-KDERGALSYAEKSIRIDER-HIPGY-IMKGNLLLSMKRPEAAVIAFRGAQELRP-D----L-RSYQ 387 (561)
Q Consensus 319 --~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~----~-~~~~ 387 (561)
+.+.......+ |-+..|.++.+-.+.++|. ++-.. ..+-....+.++++--+..++....... + . ...+
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 22233333444 6666666666666666666 54332 2233333455566555555554433111 1 0 1234
Q ss_pred HHHHHHHhcCCH---------------HHHHHHHHHHHHHCCC
Q 008550 388 GLVHSYLQFSKV---------------KEALYAAREAMKAMPQ 415 (561)
Q Consensus 388 ~l~~~~~~~~~~---------------~~A~~~~~~~~~~~p~ 415 (561)
..+.++...++. +.|...+.+++...|.
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 455555556555 7788888888887764
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.18 E-value=0.00085 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
++++.+|.++.+.|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36899999999999999999999999999875
No 288
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.13 E-value=0.00055 Score=60.45 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=82.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
+.-.+..|.+++|++.|..++..+|.....+...+.+++.++++..|+..+..++.++|+....+-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 55667788899999999999999999999999999999999999999999999999999988888888888889999999
Q ss_pred HHHHHHHHHhcCC
Q 008550 302 LSKLVHDLLSIDP 314 (561)
Q Consensus 302 A~~~~~~~~~~~~ 314 (561)
|...+..+.+++-
T Consensus 201 aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 201 AAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHhccc
Confidence 9999988887653
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.11 E-value=0.0009 Score=37.63 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45667777777777777777777777777653
No 290
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.10 E-value=0.06 Score=49.91 Aligned_cols=109 Identities=7% Similarity=-0.057 Sum_probs=65.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhcCC------------HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHH
Q 008550 270 LNFEKVRSIDPYIMTYMDEYAMLLKVKCD------------YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGAL 336 (561)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~ 336 (561)
.-|++.++.+|.+.++|..+....-..-. .+.-+.+++++++.+|++...+..+-..... .+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45777888899999999888876544322 2344556666666666666666665555555 5666666
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHh---cCChhHHHHHHHHhHH
Q 008550 337 SYAEKSIRIDERHIPGYIMKGNLLLS---MKRPEAAVIAFRGAQE 378 (561)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 378 (561)
+.+++++..+|+++..|...-..... .-.++.....|.+++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 66666666666666665544333222 2234455555555443
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.045 Score=43.64 Aligned_cols=145 Identities=14% Similarity=0.086 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCc---ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 111 KYKIASCHFALGETKAAIVEMEGIPSK---ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 111 ~~~~a~~~~~~~~~~~A~~~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
.|.-+.-+.+.+..++|+.-|..+... ....-+.+..|.+....|+...|+..|..+-+..| .+.....++++
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARl--- 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARL--- 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHH---
Confidence 445566667789999999988887554 22344567789999999999999999998876654 23333333222
Q ss_pred cccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHH
Q 008550 188 PKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQ-RFPNNIHILLEMAKVDAIIGKND 266 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 266 (561)
..+..+...|.|++.....+.+-. .+|-...+.-.+|..-++.|++.
T Consensus 137 --------------------------------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 137 --------------------------------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred --------------------------------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 226667777777777666655432 24444556667777778888888
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
+|...|.++.. +...+......+.+
T Consensus 185 ~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 185 KAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 88888877765 33444444444443
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.32 Score=46.08 Aligned_cols=85 Identities=13% Similarity=0.001 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCccHHHHHHH
Q 008550 449 PGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAAT--NMLQEALSHYEAALRINSQNEAAKKGL 525 (561)
Q Consensus 449 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l 525 (561)
|+.......+-..+.+.|-+.+|...|.+...+.|.+ ..+..+.++-..+ -+...+..+|..++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4444455566777788899999999999998888876 5554444443222 237888999999999999999999998
Q ss_pred HHHHHhcc
Q 008550 526 ERLEKQMK 533 (561)
Q Consensus 526 ~~l~~~~~ 533 (561)
-.....+|
T Consensus 537 ~~~e~~~g 544 (568)
T KOG2396|consen 537 MKEELPLG 544 (568)
T ss_pred HHhhccCC
Confidence 88887766
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.01 E-value=0.0011 Score=38.09 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
++..+|.+|.+.|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999977654
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.95 E-value=0.00088 Score=38.52 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+..+|.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777774443
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.49 Score=46.72 Aligned_cols=190 Identities=11% Similarity=-0.011 Sum_probs=94.3
Q ss_pred hcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHc----------CCcc
Q 008550 120 ALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELG----------ATPK 189 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~----------~~~~ 189 (561)
..-..++|+..++ +...++.|.+++......-.++-|...|-++- ..|.- .....|..+. .-.|
T Consensus 675 e~vgledA~qfiE----dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~-dY~Gi-k~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 675 EAVGLEDAIQFIE----DNPHPRLWRLLAEYALFKLALDTAEHAFVRCG-DYAGI-KLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred HHhchHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhc-cccch-hHHHHhhhhhhHHHHhHhHhhhhc
Confidence 3334566776665 34467888888888887777777777776552 12221 1111221111 1112
Q ss_pred cHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHH
Q 008550 190 DIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFP--NNIHILLEMAKVDAIIGKNDE 267 (561)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~ 267 (561)
+++++........ .. -+........|++-...++++..-.-.. .--.++..+|..+.....|++
T Consensus 749 ~feeaek~yld~d---------rr-----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 749 EFEEAEKLYLDAD---------RR-----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred chhHhhhhhhccc---------hh-----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111100 00 0002233334444444333332111100 113566677777777777777
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 268 AILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 268 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
|.++|.+.-. ...++.+++....+++-..+. ..-|++...+-.+|.++.. |--++|++.|-+
T Consensus 815 A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 815 AAKYYSYCGD--------TENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 7777765422 234455666666655544333 3346666666677777776 777777666654
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.093 Score=50.05 Aligned_cols=90 Identities=17% Similarity=0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
...+.+.......|+++...+..+..+...|+.+.|+..++..+. +.- .-.++.++.++..+.+|..|...+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444556777777777777777777777777777776665 221 12345666777777777777777777
Q ss_pred HHhcCCCCHHHHHHHH
Q 008550 309 LLSIDPSRPEVFVALS 324 (561)
Q Consensus 309 ~~~~~~~~~~~~~~l~ 324 (561)
+.+...-+.-.|..++
T Consensus 329 L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFA 344 (546)
T ss_pred HHhhhhhhHHHHHHHH
Confidence 7665544433333333
No 297
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.63 Score=47.07 Aligned_cols=372 Identities=10% Similarity=-0.031 Sum_probs=180.3
Q ss_pred CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHH--cCCc-ccHhHHhhccccccCCCCCCCC
Q 008550 134 IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAEL--GATP-KDIISLFAQTPNRSGRAPFDHL 210 (561)
Q Consensus 134 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 210 (561)
+...+.+...+..|..++...|++++-...=.++....|.++..|.....- .... ++...+.....+... +..
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~----dy~ 181 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG----DYN 181 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc----ccc
Confidence 344455556666666677777777666666666666666666655443321 1111 222222222222211 112
Q ss_pred ChhhHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Q 008550 211 DSSRWLHR----YVEAQCCIASNDYKGGLELFAELLQRFPN-------NIHILLEMAKVDAIIGKNDEAILNFEKVRSID 279 (561)
Q Consensus 211 ~~~~~~~~----~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 279 (561)
....|... +-.+..+...++++....+|.+++..-.. ....+......|...-..++-+.++...+...
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 22333221 11123345557788888888888864221 13444555556666656677777777776654
Q ss_pred CCChHH----HHHHH--H-HHHhcCCHhHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 280 PYIMTY----MDEYA--M-LLKVKCDYSKLSKL-------VHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 280 ~~~~~~----~~~l~--~-~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
-+.++ |.... . ......+++.+... +++.+...|....-|..+...... |++..-...+++++.
T Consensus 262 -~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~ 340 (881)
T KOG0128|consen 262 -LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVA 340 (881)
T ss_pred -chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 22111 11111 1 11223344444443 333333334334445555555555 888877888888888
Q ss_pred ccCCChhHHHHHHHHHH-hcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCCCCHHHHH
Q 008550 345 IDERHIPGYIMKGNLLL-SMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSK--VKEALYAAREAMKAMPQSAKALK 421 (561)
Q Consensus 345 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~ 421 (561)
..+.+...|+..+...- .++-.+.+...+.+++...|-...+...+.+.+..++ ...-...+.+.+.. ...++
T Consensus 341 E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~----~~~l~ 416 (881)
T KOG0128|consen 341 EMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM----TVELH 416 (881)
T ss_pred hccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH----HHHHH
Confidence 87777777777765442 3344445555566666666654332222222222111 11111222222211 00011
Q ss_pred HHHHHHhhh-------------cCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCCh-
Q 008550 422 LVGDVHASN-------------ASGREKAKKFYESALRL-EPGYLGAALALAELHVI-EGRNGDAVSLLERYLKDWADD- 485 (561)
Q Consensus 422 ~l~~~~~~~-------------~~~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~- 485 (561)
+....+... ...+..|...+...... -......+...|.+... +++.+.+..+++..+......
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~i 496 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSI 496 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchH
Confidence 111111111 12233344444433332 11112344445555443 456677777776665554444
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 486 -SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 486 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
..|+.....-...|+...++..+++++..
T Consensus 497 ag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 497 AGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 25666666666777777777777776654
No 298
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.77 E-value=0.23 Score=48.37 Aligned_cols=109 Identities=13% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHHccCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFA----------ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~----------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
|..+...|+.++|+.+.- -.-+.+..+.+.+...+..+.....+.-|.++|.+.-. ...+..
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVq 781 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQ 781 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhh
Confidence 566666677777665432 11122333445555556666666666666666665422 223344
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHH
Q 008550 292 LLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEK 341 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~ 341 (561)
++...+++++|..+.++.-+.. +++++-.|+.+.. .++++|.+.|.+
T Consensus 782 lHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred heeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHH
Confidence 5566677777766554432221 3455555665555 666666555443
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.76 E-value=0.027 Score=40.44 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCC
Q 008550 438 KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNM 500 (561)
Q Consensus 438 ~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 500 (561)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. .....+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777766666665433 344444444444444
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.75 E-value=0.027 Score=41.41 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=63.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNI---HILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCD 298 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (561)
|..++..|++-+|+++.+..+...+++. ..+..-|.++..+ +...+..+....+.+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl--------- 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL--------- 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH---------
Confidence 6778889999999999999998877765 3444455555433 222222222222222
Q ss_pred HhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc
Q 008550 299 YSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRI 345 (561)
Q Consensus 299 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~ 345 (561)
.+++++.++..+.|..+..++.+|.-+.. ..|++++...++++..
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 24566666666677766667777666655 6666666666666553
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.72 E-value=0.52 Score=44.14 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=108.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHH------HHHHHHHh--cCHhHH---HHHHHHHHhccCCCh---hHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFV------ALSVLWER--KDERGA---LSYAEKSIRIDERHI---PGYIM 355 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~l~~~~~~--~~~~~A---~~~~~~~~~~~~~~~---~~~~~ 355 (561)
-....+.++...|.+++.-+...+|+...... .+-.+... .++.+- +..++.+-..+-+.. .-+..
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~ 384 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVF 384 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 33456788888999888888888887642111 11122221 222222 223333322222222 22344
Q ss_pred HHHHHHhcCC-hhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHH--HHHH------HHH---HCC---CCHHHH
Q 008550 356 KGNLLLSMKR-PEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALY--AARE------AMK---AMP---QSAKAL 420 (561)
Q Consensus 356 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~------~~~---~~p---~~~~~~ 420 (561)
-|.-+.+.|. -++|+..++.+++..|.+-.-.+......+ ..|.+|+. .+.+ .+. +.| .+.+.-
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 5666777777 788999999999888776221111111111 11222221 1111 111 112 223333
Q ss_pred HHHH--HHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 421 KLVG--DVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 421 ~~l~--~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
+.++ ..++.+ |++.++.-+-.-..++.| ++.++..+|.++....+|.+|..++...
T Consensus 464 n~LaDAEyLysq-gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQ-GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4443 345556 999999998888889999 7999999999999999999999999764
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.70 E-value=0.18 Score=40.27 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=37.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 389 LVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 389 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
+..+-...++.+++...+.-+--+.|..+..-..-|.++... |++.+|+..++.+....|..+.+.-.++.|+..+|+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 333334444555555555444444555555555555555544 555555555555444444444444444444444443
No 303
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.66 E-value=0.038 Score=39.71 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHHhcCC
Q 008550 235 LELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI--MTYMDEYAMLLKVKCD 298 (561)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 298 (561)
+..+++.+..+|+++.+.+.+|..+...|++++|++.+-.+++.+++. ..+...+..++...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 556777788888888888888888888888888888888888887765 3444445555554444
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.63 E-value=0.064 Score=42.70 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=65.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHh
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYS 300 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 300 (561)
..+....++.+++..++.-+--..|..+.+-..-|.+++..|+|.+|+..|+.+....|..+.+--.++.|+...|+..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 5556667788888888888888888888888888888888888888888888888888888888888888887777653
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.61 E-value=0.65 Score=43.75 Aligned_cols=129 Identities=10% Similarity=0.027 Sum_probs=107.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSK 301 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 301 (561)
..-....|+.-.|-+-+..+++..|.+|......+.+...+|.|+.+...+..+-..-..-..+...+.+.....|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34455679999999999999999999999999999999999999999998877666544444566667778889999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 302 LSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 302 A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
|......++...-.++++....+..... |-++++..++++.+.++|...
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 9999999988877888877666665666 899999999999999887643
No 306
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.46 Score=46.45 Aligned_cols=81 Identities=12% Similarity=-0.023 Sum_probs=42.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-------------CCChHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID-------------PYIMTYMDEY 289 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l 289 (561)
..++..|.+++|...---.+ - ..-|..+|.-....=+++-|.+.|.++..+. .....--..+
T Consensus 564 ~q~Ieag~f~ea~~iaclgV--v---~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGV--T---DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred hhhhhccchhhhhcccccce--e---cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 45667777777754321111 1 1234556666566666777777666653210 0111122445
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 008550 290 AMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 290 ~~~~~~~~~~~~A~~~~~~ 308 (561)
+.++.-.|++.+|.++|.+
T Consensus 639 A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHH
Confidence 6666667777777776654
No 307
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.52 E-value=0.018 Score=36.24 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHH
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYM 286 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 286 (561)
.++.+|..+.+.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 445566666666666666666666666666665443
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.48 E-value=0.29 Score=42.28 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=118.6
Q ss_pred hCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHhcCCHhHHHHHHHHHHhcC-----CCCHH-HHHHHHHHHHh-c
Q 008550 262 IGKNDEAILNFEKVRSIDPYIM----TYMDEYAMLLKVKCDYSKLSKLVHDLLSID-----PSRPE-VFVALSVLWER-K 330 (561)
Q Consensus 262 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~-~~~~l~~~~~~-~ 330 (561)
..++++|+..|++++++.+... .++.....+.+.++++++-...|.+++..- .+..+ ....+-..... .
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999998764 456777889999999999998888776421 11111 11111111112 4
Q ss_pred CHhHHHHHHHHHHhc--cCCChhHH----HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-------------HHHHHHHH
Q 008550 331 DERGALSYAEKSIRI--DERHIPGY----IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-------------RSYQGLVH 391 (561)
Q Consensus 331 ~~~~A~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~~~~~l~~ 391 (561)
+.+--..+|+.-+.. +..+...| ..+|.+|+..++|..-.+++++.-...... +.|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 444444455543331 22333333 468999999999988887777765543211 23445567
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHhhhcCChHHHHHHHHHHHHhC
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQ--SAKALK----LVGDVHASNASGREKAKKFYESALRLE 448 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~~~~~~~A~~~~~~a~~~~ 448 (561)
+|..+++..+-...|++++..... +|...- .=|.++... |++++|-..|-.+++..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlre-g~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLRE-GEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccccc-chHHHHHhHHHHHHhcc
Confidence 777888888888888888875432 233222 223455665 88999988888888753
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=1.1 Score=44.47 Aligned_cols=80 Identities=10% Similarity=-0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 008550 284 TYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLS 362 (561)
Q Consensus 284 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 362 (561)
.++..+|..+..+..+++|.++|...-.. -....++.. .++++ ++.....-|++...+-.+|.++..
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHh
Confidence 45555566665555666665555443211 112222222 22222 122223345555555566666666
Q ss_pred cCChhHHHHHHHH
Q 008550 363 MKRPEAAVIAFRG 375 (561)
Q Consensus 363 ~~~~~~A~~~~~~ 375 (561)
.|.-++|.+.|-+
T Consensus 865 vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLR 877 (1189)
T ss_pred hchHHHHHHHHHh
Confidence 6666666555543
No 310
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.66 Score=41.69 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=159.5
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhc--cCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSS--AINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNS 81 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (561)
+++.++.+...++++.++.+...++.-. +.+.+..-..+..+...+|+.+.+.|++.+=....+..-......+++..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kaka 86 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKA 86 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHH
Confidence 4678888999999999999888887741 11222234556778899999999999988766555544332211121111
Q ss_pred cchhhhcccCCCCCCcccccccCCChHHHHHHHHH-HHHhcCCHHHHHHHHhcCCCc-c-c-----chhHHHHHHHHHHh
Q 008550 82 TSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS-CHFALGETKAAIVEMEGIPSK-A-R-----NLQMSLLMAKLYRN 153 (561)
Q Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~A~~~l~~~~~~-~-~-----~~~~~~~l~~~~~~ 153 (561)
+. +-..+-. +..--+..+.-+.++...... . . ....-..+..+|..
T Consensus 87 aK--------------------------lvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d 140 (411)
T KOG1463|consen 87 AK--------------------------LVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYND 140 (411)
T ss_pred HH--------------------------HHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 10 1111111 111122233333333331111 0 0 01122457888888
Q ss_pred cCChhhHHHHHHHHHhcCC--CcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCH
Q 008550 154 SRHNRGAVACYKECLRHCP--FFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDY 231 (561)
Q Consensus 154 ~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (561)
.++|.+|+.....+++.-. ++... | ..........|+...+.
T Consensus 141 ~~~YteAlaL~~~L~rElKKlDDK~l---L---------------------------------vev~llESK~y~~l~Nl 184 (411)
T KOG1463|consen 141 TKRYTEALALINDLLRELKKLDDKIL---L---------------------------------VEVHLLESKAYHALRNL 184 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccc---e---------------------------------eeehhhhhHHHHHHhcc
Confidence 9999999888777764221 00000 0 01123347778888888
Q ss_pred HHHHHHHHHHHHh-----CCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC---CChHH---HHHHHHHHHhcCC
Q 008550 232 KGGLELFAELLQR-----FPNNI--HILLEMAKVDAIIGKNDEAILNFEKVRSIDP---YIMTY---MDEYAMLLKVKCD 298 (561)
Q Consensus 232 ~~A~~~~~~~~~~-----~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~---~~~l~~~~~~~~~ 298 (561)
.+|...+..+... .|... .+-..-|..+....+|..|..+|-.+++-.. ++..+ +..+-.+-...+.
T Consensus 185 ~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 185 PKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred hhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 8888888776542 22221 2223335666666888889888888877422 11233 3333444455666
Q ss_pred HhHHHHHH--HHHHhcCCCCHHHHHHHHHHHHh---cCHhHHHHHHHHHHhccC
Q 008550 299 YSKLSKLV--HDLLSIDPSRPEVFVALSVLWER---KDERGALSYAEKSIRIDE 347 (561)
Q Consensus 299 ~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A~~~~~~~~~~~~ 347 (561)
.++...++ +.+++....+.++....+..+.. .+|+.|+.-|..-+..+|
T Consensus 265 ~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 265 PDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 66654444 34455555666777777777765 677788877777766554
No 311
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.34 E-value=0.02 Score=50.09 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=58.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
.|.-....|+.++|..+|+.++...|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 35666777888888888888888888888888888888888888888888888888888888877766544
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.30 E-value=0.059 Score=46.21 Aligned_cols=87 Identities=20% Similarity=0.131 Sum_probs=56.6
Q ss_pred CChHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC-----h--HHHHH
Q 008550 432 SGREKAKKFYESALRL----EPGY---LGAALALAELHVIEGRNG-------DAVSLLERYLKDWAD-----D--SLHVK 490 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~----~p~~---~~~~~~la~~~~~~g~~~-------~A~~~~~~~~~~~~~-----~--~~~~~ 490 (561)
..+++|++.|.-|+-. .+.. ...+..+||+|...|+.+ .|...|+++++.... + .+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4456666666655432 1111 345677788888888744 455555555544322 1 57788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 491 LAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 491 la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+|.+..+.|++++|..+|.+++.....+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999988864433
No 313
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.26 E-value=0.014 Score=50.91 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008550 391 HSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALA 459 (561)
Q Consensus 391 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la 459 (561)
.-..+.|+.++|...|+.++.+.|++++++..+|...... ++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3345667777777777777777777777777777777666 6777777777777777777766665543
No 314
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=1.7 Score=44.12 Aligned_cols=406 Identities=13% Similarity=0.070 Sum_probs=225.0
Q ss_pred hhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHH--HHH
Q 008550 41 LKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIA--SCH 118 (561)
Q Consensus 41 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a--~~~ 118 (561)
.....+..+-..+.+.|++++-...=.++.++.|-.| .++.... ...
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~-------------------------------~lWl~Wl~d~~~ 159 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPP-------------------------------HLWLEWLKDELS 159 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCh-------------------------------HHHHHHHHHHHh
Confidence 3344556666667777777766666666666655433 1222211 122
Q ss_pred -HhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHH-------hcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCccc
Q 008550 119 -FALGETKAAIVEMEGIPSKARNLQMSLLMAKLYR-------NSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKD 190 (561)
Q Consensus 119 -~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~ 190 (561)
...++..++...+++....-.++..|...+.... ..++++.-...|.+++..--....
T Consensus 160 mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-------------- 225 (881)
T KOG0128|consen 160 MTQSEERKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-------------- 225 (881)
T ss_pred hccCcchhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc--------------
Confidence 2235666677777775555555555544444433 345677777777777654321111
Q ss_pred HhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHH--H-HHHHhC
Q 008550 191 IISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIH----ILLEMA--K-VDAIIG 263 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la--~-~~~~~~ 263 (561)
.....|..+.-.-..+...-..++-+.++...+... -+.. .+.... . ......
T Consensus 226 -------------------~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~ 285 (881)
T KOG0128|consen 226 -------------------EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETK 285 (881)
T ss_pred -------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhc
Confidence 011112222111233333333355555555555432 1111 111111 1 111233
Q ss_pred CHHHHHHH-------HHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh--cCHhH
Q 008550 264 KNDEAILN-------FEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER--KDERG 334 (561)
Q Consensus 264 ~~~~A~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 334 (561)
+++.|... +.+.++..|.....|..+.......|....-...++++....+.+...|...+..... +-...
T Consensus 286 ~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~ 365 (881)
T KOG0128|consen 286 KLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQR 365 (881)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccc
Confidence 44444443 4444555555556677778888888998888888999998888889999888877765 66667
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCChh-HHHHHHHHhHHhC----CChHHHHHHH-------HHHHhcCCHHHH
Q 008550 335 ALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE-AAVIAFRGAQELR----PDLRSYQGLV-------HSYLQFSKVKEA 402 (561)
Q Consensus 335 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~----~~~~~~~~l~-------~~~~~~~~~~~A 402 (561)
+...+-+++...|.....|...-..+.+.+... .-...+.+.+... -+.-.+.... ..-.....+..|
T Consensus 366 ~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A 445 (881)
T KOG0128|consen 366 GVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHA 445 (881)
T ss_pred cccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Confidence 777788888888776665544333333333222 1222233322210 0000000000 000111234455
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 403 LYAAREAMKA-MPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLG-AALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 403 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
...|...... .......+...|.+.....++.+.++.++...+.....+.. .|+....+-...|+...+..+++++..
T Consensus 446 ~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 446 WEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 5555554443 22245566677777777668889999999887766555544 778888888888999999999988887
Q ss_pred hCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 481 DWADD----SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 481 ~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
...++ .++..+-......|.++....+-.+.
T Consensus 526 ~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 526 QVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred cCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 54332 55555666666677777666555443
No 315
>PRK10941 hypothetical protein; Provisional
Probab=96.18 E-value=0.069 Score=47.48 Aligned_cols=75 Identities=13% Similarity=0.005 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
.++-.++.+.++++.|+.+.+..+...|++ .-+.-.|.+|.++|.+..|...++..++..|+++.+..-..++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 445556666666667776666666666665 445556777777777777777777777777777766555555543
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.14 E-value=0.39 Score=37.64 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=41.6
Q ss_pred HhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008550 394 LQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGR 467 (561)
Q Consensus 394 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~ 467 (561)
...++++++...+..+--+.|+.+..-..-|.++... |++.+|+..++...+..+..+...-.++.|+.-+|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r-g~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR-GNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHc-CCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3455555555555555555566666655666666655 666666666666555555555555555555555544
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.13 E-value=0.011 Score=32.61 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQ 517 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 517 (561)
++..+|.++...|++++|..+|+++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777777777777777777664
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.12 E-value=0.0096 Score=32.95 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhccc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYYKI 75 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 75 (561)
..++.+|.+++..|++++|+..|+++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 36789999999999999999999999998753
No 319
>PRK10941 hypothetical protein; Provisional
Probab=96.12 E-value=0.09 Score=46.76 Aligned_cols=71 Identities=13% Similarity=0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
..++-.++...++++.|+.+.+.++...|+++.-+...|.+|.+. |.+..|...++..++..|+++.+-.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 445666777777888888888888888888777777778887777 77788888787777777777665443
No 320
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.07 E-value=0.13 Score=37.91 Aligned_cols=103 Identities=13% Similarity=0.001 Sum_probs=69.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTY---MDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKD 331 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 331 (561)
+|.-++..|++-+|+++.+..+...+++... +..-|.++..+ +......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchHHHHHHH--------
Confidence 3556677777777777777777777666533 23333333222 112221222222222
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
.+++++.++..+.|..+..++.+|.-+-....|+++....++++..
T Consensus 62 --~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 --GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 5788899999999999999999999888888899999999988876
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.07 E-value=0.85 Score=39.55 Aligned_cols=185 Identities=9% Similarity=0.031 Sum_probs=99.7
Q ss_pred cCHhHHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHh-------CCChHHHHHHHHHHHhcCC
Q 008550 330 KDERGALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPEAAVIAFRGAQEL-------RPDLRSYQGLVHSYLQFSK 398 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 398 (561)
.++++|+..|++++++.+... .++..+..+.++++++++-...|.+.+.. +-+..+...+...-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455666666666666665443 33445556666677776666666655432 1111222222222223333
Q ss_pred HHHHHHHHHHHHHH--CCCCHHHH----HHHHHHHhhhcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHH
Q 008550 399 VKEALYAAREAMKA--MPQSAKAL----KLVGDVHASNASGREKAKKFYESALRLEPG------------YLGAALALAE 460 (561)
Q Consensus 399 ~~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~ 460 (561)
.+--..+|+..+.. +..+...| ..+|.+++.. +.+.+-.+.+++.-..... -.+++..-..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~-~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDR-GEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeH-HHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 33333444433321 12233333 3567777776 7776666666555433211 1233444456
Q ss_pred HHHHcCChHHHHHHHHHHHhhC---CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 461 LHVIEGRNGDAVSLLERYLKDW---ADD----SLHVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
.|..+.+...-..+|++++... |.+ .+.-.=|..+.+.|++++|-..|-.|++..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 6677777777777788877654 333 223333566777888888888777777653
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.92 E-value=0.13 Score=42.79 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=80.2
Q ss_pred CchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHH
Q 008550 37 TSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIAS 116 (561)
Q Consensus 37 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 116 (561)
........++..+|.-|++.|++++|++.|.++.+...+ + -.-.+..+.+.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~---------------------------~~~id~~l~~ir 81 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-P---------------------------GHKIDMCLNVIR 81 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-H---------------------------HHHHHHHHHHHH
Confidence 345666778999999999999999999999998775311 1 022567888999
Q ss_pred HHHhcCCHHHHHHHHhcCCC---cccchh----HHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 008550 117 CHFALGETKAAIVEMEGIPS---KARNLQ----MSLLMAKLYRNSRHNRGAVACYKECLRHC 171 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~~~---~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~l~~~ 171 (561)
+.+..+++..+...+.++.. .+.+.. ....-|..++..++|.+|...|-.+....
T Consensus 82 v~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 82 VAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999988887532 223222 33556777888999999999988776444
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.72 Score=37.12 Aligned_cols=126 Identities=19% Similarity=0.127 Sum_probs=73.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHH
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNN--IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYI----MTYMDEYAML 292 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~ 292 (561)
|+.+.-+.+.+..++|+..|..+-+..-.+ .-+.+..+.+....|+...|+..|..+-...|-- --+...-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 344555666677777777777766553332 2345566777777777777777777765543321 1234455566
Q ss_pred HHhcCCHhHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 293 LKVKCDYSKLSKLVHDLLS-IDPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
+...|.|++.....+.+-. .+|-...+.-.||..-.+ |++.+|..+|.....
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6677777666655544321 233334455555655555 666666666666554
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.5 Score=45.83 Aligned_cols=126 Identities=16% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH--HHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H
Q 008550 402 ALYAAREAMKAMPQSAKALKLV--GDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLER-Y 478 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~ 478 (561)
++..+...+..+|.++..+... ...+... +....+.-....++..+|++..+..+++......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPL-ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhcccc-ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444445555555553322 3333333 5555666666666666666666666666666666555555444444 4
Q ss_pred HhhCCCh-HH------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 479 LKDWADD-SL------HVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 479 ~~~~~~~-~~------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
....|.+ .+ ++.+++....+|+..++.....++..+.|.++.+...+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4444443 22 22246677777777777777777777777776666555555
No 325
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.73 E-value=0.031 Score=49.03 Aligned_cols=87 Identities=13% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 008550 238 FAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDE-YAMLLKVKCDYSKLSKLVHDLLSIDPSR 316 (561)
Q Consensus 238 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 316 (561)
|.+.....|+++..|...+..-...|.+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...+.+.+..+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445556678888888888887788888888888888888888888888876 5556677888888888888888888888
Q ss_pred HHHHHHHH
Q 008550 317 PEVFVALS 324 (561)
Q Consensus 317 ~~~~~~l~ 324 (561)
|.+|...-
T Consensus 176 p~iw~eyf 183 (435)
T COG5191 176 PRIWIEYF 183 (435)
T ss_pred chHHHHHH
Confidence 88776544
No 326
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=2.3 Score=41.14 Aligned_cols=238 Identities=12% Similarity=-0.016 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC----HHHHHHHHHHHHh-cCHhHHHHHHH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSR----PEVFVALSVLWER-KDERGALSYAE 340 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~-~~~~~A~~~~~ 340 (561)
....+.+.......|.++-.....+..+...|+.+.|+..++..++ +.- .-.++.++.++.- .+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444445555556777776667777777777776666766666655 211 1134445555555 67777777777
Q ss_pred HHHhccCCChhHHHHHH-HHHHh--------cCChhHHHHHHHHhH---HhCCCh----HHHHHHHHHHHhcCCHHHHHH
Q 008550 341 KSIRIDERHIPGYIMKG-NLLLS--------MKRPEAAVIAFRGAQ---ELRPDL----RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 341 ~~~~~~~~~~~~~~~l~-~~~~~--------~~~~~~A~~~~~~~~---~~~~~~----~~~~~l~~~~~~~~~~~~A~~ 404 (561)
..........-.|..++ -|++. .|+-+.|-..++... ...|.+ ......+.-+...+.
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~------ 401 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP------ 401 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc------
Confidence 66665544433333333 22221 123333322222221 111211 111111111111110
Q ss_pred HHHHHHHHCCCCHH--HHHHHHHHHhhh-cCChHHHHHHHHHHHH---h-CCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 008550 405 AAREAMKAMPQSAK--ALKLVGDVHASN-ASGREKAKKFYESALR---L-EPGYLG-AALALAELHVIEGRNGDAVSLLE 476 (561)
Q Consensus 405 ~~~~~~~~~p~~~~--~~~~l~~~~~~~-~~~~~~A~~~~~~a~~---~-~p~~~~-~~~~la~~~~~~g~~~~A~~~~~ 476 (561)
.++..+. .++.++.++..- ....++.. -++...+ . ++++.- -++.+|.++..+|+...|..+|.
T Consensus 402 -------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 402 -------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred -------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001111 112222222111 01222222 1121111 1 222222 34567999999999999999998
Q ss_pred HHHhhC----C----ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCccH
Q 008550 477 RYLKDW----A----DDSLHVKLAQVFAATNM-LQEALSHYEAALRINSQNE 519 (561)
Q Consensus 477 ~~~~~~----~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 519 (561)
..++.. . .+-+++.+|..+...|. ..++..++.+|-+...++.
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 877432 1 12688999999999988 9999999999988775543
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.64 E-value=0.22 Score=38.96 Aligned_cols=77 Identities=18% Similarity=0.005 Sum_probs=61.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
......++.+++..++..+--..|+.+++-..-|.++...|+|.+|+..|+.+....+..+...-.++.|+..+|+.
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34445788888888888888888888888888888888888999998888888887777777777777787777764
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.63 E-value=0.13 Score=44.09 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=56.8
Q ss_pred hhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCC
Q 008550 16 LYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSS 95 (561)
Q Consensus 16 ~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 95 (561)
.++.|+......+-.. ......+...+..++.+|+.|-..|+-+....++++|+......-.. .
T Consensus 92 t~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~-----------e---- 155 (214)
T PF09986_consen 92 TLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN-----------E---- 155 (214)
T ss_pred CHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh-----------C----
Confidence 4555665544443332 22233456788899999999999998666556666655543100000 0
Q ss_pred CcccccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc
Q 008550 96 SPNSFNVSAINENEVKYKIASCHFALGETKAAIVEMEGIPSK 137 (561)
Q Consensus 96 a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~ 137 (561)
.+.....++..+.+.+|....+.|++++|...+.++...
T Consensus 156 ---~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 156 ---DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 000112233456666666666666666666666665433
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.51 E-value=0.026 Score=47.18 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 008550 432 SGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
++.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 556666666666666666666666666666666666666666666666666554
No 330
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=1.8 Score=42.06 Aligned_cols=49 Identities=22% Similarity=0.210 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008550 228 SNDYKGGLELFAELLQR------------FPNNIHILLEMAKVDAIIGKNDEAILNFEKVR 276 (561)
Q Consensus 228 ~~~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 276 (561)
..-|++|...|.-+... .|-+...+..++.+...+|+.+-|....++++
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34566777776666543 23335566666666666666666666666554
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.38 E-value=0.33 Score=45.59 Aligned_cols=126 Identities=12% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-CCChHHHHHHHHHHHhcCCHHHHH
Q 008550 325 VLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLRSYQGLVHSYLQFSKVKEAL 403 (561)
Q Consensus 325 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 403 (561)
..+..|+.-.|-.-...++...|.+|......+.+...+|+|+.+...+..+-.. ...+.+...+-.....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3344488888888888888889999988888899999999999998887766554 233455666677788899999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 404 YAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 404 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
....-.+...-+++++....+...... |-++++..++++.+.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l-~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADAL-QLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHH-hHHHHHHHHHHHHhccCChh
Confidence 988888877767777776666666666 88899999999999887754
No 332
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.36 E-value=0.81 Score=34.13 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-------CCh-----HH
Q 008550 432 SGREKAKKFYESALRLEPG------------YLGAALALAELHVIEGRNGDAVSLLERYLKDW-------ADD-----SL 487 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~-----~~ 487 (561)
|-+++|...++++.+...+ +...+-.|+..+..+|+|++++..-++++... .+. .+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 7777887778777765322 12355667888888888888877777776533 333 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
-+..|..+..+|+.++|+..|+++-+.
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 477888899999999999999987553
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=2 Score=37.71 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHH
Q 008550 5 KEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTY 66 (561)
Q Consensus 5 ~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 66 (561)
++.++.+...+++++|+.....++....+.......++..+...++..|...|+|..-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 57789999999999999999888876444455556777788999999999999886544433
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.13 E-value=0.89 Score=44.09 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
++.++.+| ++.|+.+.|.+..+.+. ++..|-.||...+.+|+++-|..+|+++
T Consensus 321 ~~~rFeLA---l~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 321 PDHRFELA---LQLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHH---HHCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred hHHHhHHH---HhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34555554 67899999999887664 5679999999999999999999999987
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.12 E-value=0.98 Score=33.72 Aligned_cols=58 Identities=16% Similarity=0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh-------CCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL-------RPDL-----RSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
+..++..+..+|+|++++..-..++.. +.+. .+.+..+..+...|+.++|+..|+.+.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 444555555566665555444444322 1221 122344445555555555555555443
No 336
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.02 E-value=0.69 Score=35.46 Aligned_cols=75 Identities=11% Similarity=0.141 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHhcC---ChhHHHHHHHHhHH-hCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMK---RPEAAVIAFRGAQE-LRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLV 423 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 423 (561)
....++++.++.... +..+.+.+++..++ ..|.. +..+.++..+.+.++|+.++.+.+..++..|++..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345566666666544 34556677777765 34443 3466677777777777777777777777777776655443
Q ss_pred H
Q 008550 424 G 424 (561)
Q Consensus 424 ~ 424 (561)
-
T Consensus 112 ~ 112 (149)
T KOG3364|consen 112 E 112 (149)
T ss_pred H
Confidence 3
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.96 E-value=0.51 Score=39.24 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--h-----HH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDWAD--D-----SL 487 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~-----~~ 487 (561)
.++..+|..|.+. |+.+.|++.|.++....... .+.++.+..+....|++.....++.++-..... + ..
T Consensus 37 ~~~~~l~~~~~~~-Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKI-GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3455566666665 66666666666655433221 234455556666666666666666655443321 1 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 008550 488 HVKLAQVFAATNMLQEALSHYEAALRIN 515 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 515 (561)
...-|..+...|+|.+|.+.|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4445666667778888887777665443
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.95 E-value=2.9 Score=40.63 Aligned_cols=157 Identities=16% Similarity=0.014 Sum_probs=82.9
Q ss_pred HHHHHHccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCH
Q 008550 222 AQCCIASNDYKGGLELFA--ELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDY 299 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 299 (561)
-......++++++..... +++..-| ......++..+.++|-++.|+...+ +++..+.+ ..+.|+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeL---Al~lg~L 334 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT--------DPDHRFEL---ALQLGNL 334 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHH---HHHCT-H
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHH---HHhcCCH
Confidence 455667788888777775 2232333 3446667777888888887776543 23444443 4677888
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHH
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQE 378 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 378 (561)
+.|.+..+ ..+++..|..+|..... |+++-|..+|+++- -+..+..+|...|+.+.-.+....+..
T Consensus 335 ~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 88876543 33467788888887777 88888888877652 233455566666766544444443332
Q ss_pred hCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 379 LRPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 379 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
....+ ..-.+++..|+.++.++.+.+
T Consensus 402 ~~~~n----~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGDIN----IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-HH----HHHHHHHHHT-HHHHHHHHHH
T ss_pred ccCHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 22211 112333444555555544443
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.79 E-value=0.062 Score=47.20 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=73.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHH-HHh-cCHhHHHHHHHHHHhccCC
Q 008550 271 NFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVL-WER-KDERGALSYAEKSIRIDER 348 (561)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~A~~~~~~~~~~~~~ 348 (561)
.|.++-...|.++..|..++......|.+.+--.+|.++++.+|.+.+.|...+.. +.. ++++.+...+.+++..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34455566788999999999999999999999999999999999999999875443 344 9999999999999999999
Q ss_pred ChhHHHHH
Q 008550 349 HIPGYIMK 356 (561)
Q Consensus 349 ~~~~~~~l 356 (561)
.|..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 99887653
No 340
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=4.9 Score=39.29 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHhHHh-----C----------------CChHH----HHHHHHHHHhcCCHHH
Q 008550 347 ERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQEL-----R----------------PDLRS----YQGLVHSYLQFSKVKE 401 (561)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----------------~~~~~----~~~l~~~~~~~~~~~~ 401 (561)
|-+.+.+..++.+...+|+.+.|.....+++=. . |.++. .+.....+.+.|-+.-
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 444555666666666666666555555554311 1 12222 2223344456677777
Q ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCC---hHHHH
Q 008550 402 ALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESA-----LRLEPGYLGAALALAELHVIEGR---NGDAV 472 (561)
Q Consensus 402 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a-----~~~~p~~~~~~~~la~~~~~~g~---~~~A~ 472 (561)
|.++++-.++++|. +|.....+..+|.-...+|.=-+..++.. +..-|+. ..-..+|..|..... -..|.
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHH
Confidence 77777777777776 66665555555554434554444444433 2223332 222345555555444 34566
Q ss_pred HHHHHHHhhCC
Q 008550 473 SLLERYLKDWA 483 (561)
Q Consensus 473 ~~~~~~~~~~~ 483 (561)
..+.+|+...|
T Consensus 440 ~~l~qAl~~~P 450 (665)
T KOG2422|consen 440 NALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhCc
Confidence 66666666554
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.59 E-value=0.078 Score=31.49 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.++..+|..|..+|+|++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467889999999999999999999999875
No 342
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.57 E-value=2.9 Score=40.93 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHH--HHHHHh-cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH-
Q 008550 300 SKLSKLVHDLLSIDPSRPEVFVAL--SVLWER-KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRG- 375 (561)
Q Consensus 300 ~~A~~~~~~~~~~~~~~~~~~~~l--~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~- 375 (561)
.-++..+...+..+|.++..+... ...+.. ++...+.-.....+..+|.+..+..+++......|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 335556666666777777764443 444444 7777888888888888888888888888888777777776666655
Q ss_pred hHHhCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhh
Q 008550 376 AQELRPDLR-------SYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHAS 429 (561)
Q Consensus 376 ~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 429 (561)
+....|++. .++.++......|+..++...+.++....|.++.....+.....+
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~ 188 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQE 188 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 666667652 133457777788888888888888888888876666555544333
No 343
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.45 Score=46.48 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=81.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNN------IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAM 291 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 291 (561)
+...|...++..+|..+++.|...+...|.+ ......++.||..+.+.+.|.++++.+-+.+|.++-.......
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3456788899999999999999999887765 4566778899999999999999999999999999988888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhc
Q 008550 292 LLKVKCDYSKLSKLVHDLLSI 312 (561)
Q Consensus 292 ~~~~~~~~~~A~~~~~~~~~~ 312 (561)
+....|.-++|+.+.......
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888999999999888776544
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.46 E-value=6.9 Score=40.32 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 332 ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPD-LRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 332 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
..+|..++..+.... .+....-....+....++++.+...+......... ....+.+|..+...|+.++|...|+++.
T Consensus 295 ~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555555443222 12223333333444566666655555553222111 1345566666666677777766666653
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCCh-H--HH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 008550 411 KAMPQSAKALKLVGDVHASNASGR-E--KA-KKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWADDS 486 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~-~--~A-~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 486 (561)
. +.+ .|-.++.-.. |.. . .. ...-...+ +. ......+..+...|+...|...+..++.. .++.
T Consensus 374 ~--~~~--fYG~LAa~~L---g~~~~~~~~~~~~~~~~~---~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~ 440 (644)
T PRK11619 374 Q--QRG--FYPMVAAQRL---GEEYPLKIDKAPKPDSAL---TQ--GPEMARVRELMYWNMDNTARSEWANLVAS-RSKT 440 (644)
T ss_pred c--CCC--cHHHHHHHHc---CCCCCCCCCCCCchhhhh---cc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHH
Confidence 2 211 2222222111 211 0 00 00000000 11 12345677788889999999988888775 4455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
-...++.+....|.++.++....++
T Consensus 441 ~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 441 EQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 6677788888888888887666543
No 345
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=4.4 Score=37.68 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=100.4
Q ss_pred HHHHhhhhhhhHHhHHHHHH-HhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhh
Q 008550 9 TALIDQGLYDSAQMLGCFLV-SSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSS 87 (561)
Q Consensus 9 ~~~~~~~~~~~a~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 87 (561)
-.|++++.|.+|....+.++ +++..+...-.-..+..|+.+..++-..|+...-...+...+....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt------------- 200 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT------------- 200 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh-------------
Confidence 35678889999988887764 4444444444555677888888888888887777777766665420
Q ss_pred cccCCCCCCcccccccCC--ChHHHHHHHHHHHHhcCCHHHHHHHHhcCC--Cc-c--cchhHHHHHHHHHHhcCChhhH
Q 008550 88 LSTSNRSSSPNSFNVSAI--NENEVKYKIASCHFALGETKAAIVEMEGIP--SK-A--RNLQMSLLMAKLYRNSRHNRGA 160 (561)
Q Consensus 88 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~--~~-~--~~~~~~~~l~~~~~~~~~~~~A 160 (561)
+... ....+...+-++|+..+.|+.|-....+.. .. . .....++.+|.+..-+++|..|
T Consensus 201 --------------Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA 266 (493)
T KOG2581|consen 201 --------------LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSA 266 (493)
T ss_pred --------------hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHH
Confidence 0000 113355567789999999999999988853 22 2 2345668899999999999999
Q ss_pred HHHHHHHHhcCCCc
Q 008550 161 VACYKECLRHCPFF 174 (561)
Q Consensus 161 ~~~~~~~l~~~p~~ 174 (561)
..+|-+++...|..
T Consensus 267 ~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 267 LEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHhCcch
Confidence 99999999999973
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.35 E-value=7.2 Score=40.16 Aligned_cols=398 Identities=10% Similarity=-0.045 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH---Hc
Q 008550 109 EVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE---LG 185 (561)
Q Consensus 109 ~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~---~~ 185 (561)
.-.|.-|.-.++.|++..+......+...|- ..+.....+....+.. .-..+...++.+|+.+........ ..
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL--~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPL--YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCc--HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 3577888899999999999888887764442 2233333333232321 122555666777766544322211 11
Q ss_pred CCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q 008550 186 ATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKN 265 (561)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 265 (561)
...++....+... ...| .........+......|+-++|.....++.......+.....+-..+...|..
T Consensus 110 a~~~~w~~~~~~~----~~~p------~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKP------KPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHccCHHHHHHhc----CCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 1222332222211 0001 01111111233444555555555555555444444444444444444444443
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHh-cCCHhHHHHH-H------HHHHhcCCCCH--HHHHHHHHHHHh-cCHhH
Q 008550 266 DEAILNFEKVRSIDPYIMTYMDEYAMLLKV-KCDYSKLSKL-V------HDLLSIDPSRP--EVFVALSVLWER-KDERG 334 (561)
Q Consensus 266 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~-~------~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~ 334 (561)
......-+--+.+...+......+...+-. ....-++... . .......|.+. .-...++..-.. .+.+.
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 333222111111222222222222221100 0000001100 0 00011111111 111111211222 56677
Q ss_pred HHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 335 ALSYAEKSIRIDERHI----PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 335 A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|...+.+.....+-+. .++..+|.-....+..++|...+..+.....+.........+....++++.....+..+-
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 7777766544433222 223333333333322556666666654443333333333445557778877777776654
Q ss_pred HHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---H-HHHHHHHHhhCCChH
Q 008550 411 KAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD---A-VSLLERYLKDWADDS 486 (561)
Q Consensus 411 ~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~---A-~~~~~~~~~~~~~~~ 486 (561)
..........+.+|..+... |+.++|...|+++.. +.+ .|-.++.-. +|..-. . ...-...+.. .
T Consensus 340 ~~~~~~~rw~YW~aRa~~~~-g~~~~A~~~~~~~a~--~~~--fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~~----~ 408 (644)
T PRK11619 340 MEAKEKDEWRYWQADLLLEQ-GRKAEAEEILRQLMQ--QRG--FYPMVAAQR--LGEEYPLKIDKAPKPDSALTQ----G 408 (644)
T ss_pred HhhccCHhhHHHHHHHHHHc-CCHHHHHHHHHHHhc--CCC--cHHHHHHHH--cCCCCCCCCCCCCchhhhhcc----C
Confidence 44445667778888887776 888888888888643 222 222233221 222100 0 0000011111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
-....+..+...|+...|...+..++.. . ++.-...++.+-...+
T Consensus 409 ~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g 453 (644)
T PRK11619 409 PEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQ 453 (644)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCC
Confidence 2466777888999999999999888875 2 3444555555554443
No 347
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.30 E-value=0.082 Score=44.37 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh
Q 008550 224 CCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM 283 (561)
Q Consensus 224 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 283 (561)
.....++.+.|.+.|.+++..-|.....|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344567888888888888888888888888888888888888888888888888888763
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=2.7 Score=39.22 Aligned_cols=172 Identities=11% Similarity=0.003 Sum_probs=118.9
Q ss_pred hhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHH
Q 008550 157 NRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLE 236 (561)
Q Consensus 157 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 236 (561)
..+++..=.+.+..+|+...+|..--.+....... . ...-.....-.++-+.
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~------~----------------------~~~~~ek~~~ld~eL~ 96 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTR------A----------------------QLEPLEKQALLDEELK 96 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhh------h----------------------cCCHHHHHHhhHHHHH
Confidence 35677777888888998777775432221100000 0 0111122235677788
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHhc----CCHhHHHHHHHHHH
Q 008550 237 LFAELLQRFPNNIHILLEMAKVDAIIGK--NDEAILNFEKVRSIDPYIMTYMDEYAMLLKVK----CDYSKLSKLVHDLL 310 (561)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~ 310 (561)
+...+++.+|++..+|..+..++.+.+. +..=+.+.+++++.+|.+..+|...=.+.... ....+=+++..+++
T Consensus 97 ~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 97 YVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 8999999999999999999999987764 67889999999999999987775544433332 23566778889999
Q ss_pred hcCCCCHHHHHHHHHHHHh-------cC------HhHHHHHHHHHHhccCCChhHHHHH
Q 008550 311 SIDPSRPEVFVALSVLWER-------KD------ERGALSYAEKSIRIDERHIPGYIMK 356 (561)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~-------~~------~~~A~~~~~~~~~~~~~~~~~~~~l 356 (561)
..++.+..+|.....+... |. ...-+.....++-.+|.+..+|+..
T Consensus 177 ~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 177 NDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 9999999999988877752 31 2244555666777889988887663
No 349
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.10 E-value=0.51 Score=43.65 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCCh--HHHHHHHHHHHHhcC
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINE--NEVKYKIASCHFALG 122 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~a~~~~~~~ 122 (561)
+-+.-|...|++|+|..|.--|+.++++..+-.- .+....+ ....... -.+--.+..||++++
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a-----------~~k~~~~----~~~di~~vaSfIetklv~CYL~~r 242 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAA-----------LSKPFKA----SAEDISSVASFIETKLVTCYLRMR 242 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh-----------ccCCCCC----ChhhHHHHHHHHHHHHHHhhhhcC
Confidence 3445577899999999999999999998622110 0000000 0000011 124556899999999
Q ss_pred CHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 123 ETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 123 ~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
+.+-|+....+ |..+|..+..++..+.++....+|.+|.+.+.-+
T Consensus 243 kpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 243 KPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred CCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997665 7788988999999999999999999998776544
No 350
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.84 E-value=0.21 Score=47.46 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=57.3
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWER----KDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAF 373 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 373 (561)
....++..|.+++...|.....+...+.++.. |+.-.|+.-...++.++|....+++.++.++..++++.+|+.+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 34555666666666666666666655555544 45556666667777777777777777777777777777777777
Q ss_pred HHhHHhCCChH
Q 008550 374 RGAQELRPDLR 384 (561)
Q Consensus 374 ~~~~~~~~~~~ 384 (561)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 66666666543
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.80 E-value=0.4 Score=32.78 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcC
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALG 122 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~ 122 (561)
+...+..|.-+|.+.+.++|+..++++++..++.+. ...+.-.+..++...|
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~----------------------------rf~~lG~l~qA~~e~G 57 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED----------------------------RFRVLGYLIQAHMEWG 57 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH----------------------------HHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999998754331 1234555778889999
Q ss_pred CHHHHHHHH
Q 008550 123 ETKAAIVEM 131 (561)
Q Consensus 123 ~~~~A~~~l 131 (561)
+|.+.+...
T Consensus 58 kyr~~L~fA 66 (80)
T PF10579_consen 58 KYREMLAFA 66 (80)
T ss_pred HHHHHHHHH
Confidence 999988754
No 352
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.77 E-value=0.35 Score=46.04 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAII---GKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKV 295 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 295 (561)
+..|.-.+..+....|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....+++.++.++..
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e 457 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE 457 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH
Confidence 33455555556678889999999999999888888888888764 466677888888889999999999999999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCH
Q 008550 296 KCDYSKLSKLVHDLLSIDPSRP 317 (561)
Q Consensus 296 ~~~~~~A~~~~~~~~~~~~~~~ 317 (561)
.+++.+|+.+...+...+|.+.
T Consensus 458 l~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 458 LTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999888888888553
No 353
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.73 E-value=1.3 Score=41.11 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=74.0
Q ss_pred hHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008550 214 RWLH-RYVEAQCCIASNDYKGGLELFAELLQRFP--------NN----------IHILLEMAKVDAIIGKNDEAILNFEK 274 (561)
Q Consensus 214 ~~~~-~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~ 274 (561)
.|+. .+..|..++++++|..|..-|..+++... .. ..+-..+..||..+++.+-|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 3443 34457778888888888888888776422 11 13445688999999999999999999
Q ss_pred HHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHH
Q 008550 275 VRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVH 307 (561)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 307 (561)
.+..+|..+.-+...+.++..+.+|.+|...+-
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876553
No 354
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.57 E-value=0.13 Score=29.67 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
+.+..+|.+-+..++|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999974
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.55 E-value=1 Score=37.60 Aligned_cols=76 Identities=11% Similarity=0.126 Sum_probs=46.9
Q ss_pred hcCCHhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHH
Q 008550 295 VKCDYSKLSKLVHDLLSI-DPSRPEVFVALSVLWERKDERGALSYAEKSIRIDER----HIPGYIMKGNLLLSMKRPEAA 369 (561)
Q Consensus 295 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A 369 (561)
....-+.|...|-++-.. .-++++..+.+|..|...+.++++..+.+++++.+. +++++..++.++...|+++.|
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333344555555444322 124567777777777777777777777777776443 356677777777777777766
Q ss_pred H
Q 008550 370 V 370 (561)
Q Consensus 370 ~ 370 (561)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.43 E-value=0.19 Score=29.77 Aligned_cols=28 Identities=36% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..+|.+|...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566777777777777777777777664
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.37 E-value=5.8 Score=35.76 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHHhCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 354 IMKGNLLLSMKRPEAAVIAFRGAQELRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 354 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
..+.....+..+..+-++.-..+++++|.. .+|..++.- ...-..+|.+.++++++... ..+......... |
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~-~ 260 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ-S 260 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh-c
Confidence 444445555666666667777777777766 345444432 22335566667776665422 111111111111 2
Q ss_pred ChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHHHHHH
Q 008550 433 GREKAKKFYESALRLEPGYLG--AALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQEALSH 507 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~ 507 (561)
...+|. .+.+ .+.. +...++.|..++|+..+|++.++...+..|-. .++-++-..+....-|.+-...
T Consensus 261 ~~~da~------~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 261 PQHEAQ------LRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred cchhhh------hhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 1111 2222 34568888999999999999999888877743 5566666666665555544444
Q ss_pred HHHHHhc-CCccHHHHHHHHHH
Q 008550 508 YEAALRI-NSQNEAAKKGLERL 528 (561)
Q Consensus 508 ~~~al~~-~p~~~~~~~~l~~l 528 (561)
+-+-=++ -|......+.-+.+
T Consensus 334 LakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 334 LAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHhhccccCcchHHHHHHHHHH
Confidence 4433333 24444444433333
No 358
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=7 Score=36.59 Aligned_cols=140 Identities=18% Similarity=0.096 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc-----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 008550 400 KEALYAAREAMKAMPQSAKALKLVGDVHASNA-----------SGREKAKKFYESALRLEPGYLGAALALAELHVIEGR- 467 (561)
Q Consensus 400 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~- 467 (561)
+++++.-.+.+..+|+...+|+..-.++.... .-.++-+.+...+++.+|+...+|....+++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 34555556666677766666655444443320 124556677788888999999999999999988764
Q ss_pred -hHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCCCCCC
Q 008550 468 -NGDAVSLLERYLKDWADD-SLHVKLAQVFAAT----NMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGVDPDA 539 (561)
Q Consensus 468 -~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~ 539 (561)
+..=+.+.+++++.+|.+ ..|...=.+.... ....+=+++..+++.-++.|..+|.....+...+-+.+.+.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g 203 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADG 203 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccC
Confidence 577788899999998877 4443332222222 23566678888999999999999999999887665444333
No 359
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.17 E-value=6.1 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
...|...++...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 34455566666666665555444
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.05 E-value=1.2 Score=37.46 Aligned_cols=125 Identities=14% Similarity=0.025 Sum_probs=83.5
Q ss_pred HHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHH---HHHHHHcCCccc
Q 008550 115 ASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAI---TALAELGATPKD 190 (561)
Q Consensus 115 a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~l~~~~~~~~~ 190 (561)
...+++.+...+|+...+. +..+|.+......+-+++.-.|++++|...++-+-...|....-. ..+..+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e----- 82 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE----- 82 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH-----
Confidence 3567788999999998877 888899999999999999999999999999999999999754322 2222221
Q ss_pred HhHHhhccccccCCCCCCCC-ChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008550 191 IISLFAQTPNRSGRAPFDHL-DSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN 247 (561)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 247 (561)
.+...+ -.....|.-.. ++..|...+..+..+...|.-+.+..+-+++++..|.
T Consensus 83 --a~R~ev-fag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 83 --AARNEV-FAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred --HHHHHH-hccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 111111 11222333333 4566776666666665555665566666667766554
No 361
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=12 Score=38.48 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=50.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
+-..+..+++...|.-|+.++... ..++....+.+..-|.-+|++|+|++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~--------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ--------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345678888999999999876554 4456777889999999999999999999999998875
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.75 E-value=1.5 Score=47.16 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred HHHHHHHHHHccCHHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--------CCC
Q 008550 218 RYVEAQCCIASNDYKGGLE------LFAELL-QRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSID--------PYI 282 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~------~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~ 282 (561)
.+..+......|.+.+|.+ ++.... ...|.....+..++.++...|++++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444667777777777777 555322 3467778888888888888888888888877665432 223
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHh
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--------DPSRPEVFVALSVLWER-KDERGALSYAEKSIR 344 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~ 344 (561)
...+..++......++...|...+.++... .|........++.++.. ++++.|+.+.+.+..
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345555665556666666666665555432 22223334444544444 555555555555554
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.66 E-value=0.96 Score=32.95 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=39.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPN----N-----IHILLEMAKVDAIIGKNDEAILNFEKVRSIDP 280 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 280 (561)
....+.|+|.+|++.+.+....... . ..+...+|.++...|++++|+..++.++++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3445778888888888877764221 1 34556677777788888888888888777643
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.48 E-value=8 Score=34.95 Aligned_cols=193 Identities=13% Similarity=-0.001 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-
Q 008550 251 ILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER- 329 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 329 (561)
.-+.+-+...+..+..+-++.-..+++++|.-..++..++.-- ..-..+|.++++++++... ..+...+....
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQ 259 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhh
Confidence 3344555556666677777777777777777777766665422 2234566666766665321 11111111111
Q ss_pred cCHhHHHHHHHHHHhccCCChh--HHHHHHHHHHhcCChhHHHHHHHHhHHhCCCh---HHHHHHHHHHHhcCCHHHHHH
Q 008550 330 KDERGALSYAEKSIRIDERHIP--GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDL---RSYQGLVHSYLQFSKVKEALY 404 (561)
Q Consensus 330 ~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 404 (561)
|...+|.. + ...+.. +-..++.|..++|+..+|++.++...+..|-. ...-++...+....-|.+...
T Consensus 260 ~~~~da~~------r-RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa 332 (556)
T KOG3807|consen 260 SPQHEAQL------R-RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA 332 (556)
T ss_pred ccchhhhh------h-cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111111 1 111222 33467888899999999999999888777743 234456666665555554444
Q ss_pred HHHHHHHH-CCCCHHHHHHHHHHH-------------hhhcCC---hHHHHHHHHHHHHhCCCCHHHHHH
Q 008550 405 AAREAMKA-MPQSAKALKLVGDVH-------------ASNASG---REKAKKFYESALRLEPGYLGAALA 457 (561)
Q Consensus 405 ~~~~~~~~-~p~~~~~~~~l~~~~-------------~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~ 457 (561)
.+-+.-++ .|.++...+.-+.+- .+. |- -..|++...++++.+|.-|..+..
T Consensus 333 vLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrR-GLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 333 VLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRR-GLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhc-cccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 44333222 133332222211111 111 11 135777788888888877665543
No 365
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.11 E-value=12 Score=36.20 Aligned_cols=94 Identities=15% Similarity=0.025 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWE 328 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (561)
...+..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-..+.+++.+.+-++...-..++..|.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3334444444444444444455555555543 2335556666666655 4455555666666666666655566666666
Q ss_pred hcCHhHHHHHHHHHHh
Q 008550 329 RKDERGALSYAEKSIR 344 (561)
Q Consensus 329 ~~~~~~A~~~~~~~~~ 344 (561)
.++-.++..+|.+++.
T Consensus 144 kik~sk~a~~f~Ka~y 159 (711)
T COG1747 144 KIKKSKAAEFFGKALY 159 (711)
T ss_pred HhchhhHHHHHHHHHH
Confidence 6666666666666553
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.04 E-value=0.77 Score=26.16 Aligned_cols=30 Identities=30% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHH--HHHHHhhCC
Q 008550 251 ILLEMAKVDAIIGKNDEAILN--FEKVRSIDP 280 (561)
Q Consensus 251 ~~~~la~~~~~~~~~~~A~~~--~~~~~~~~~ 280 (561)
.++.+|..+..+|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 224444443
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.92 E-value=0.59 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHhcCCc
Q 008550 488 HVKLAQVFAATNMLQEALSH--YEAALRINSQ 517 (561)
Q Consensus 488 ~~~la~~~~~~g~~~~A~~~--~~~al~~~p~ 517 (561)
++.+|-.+...|++++|++. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45556666666666666666 3355555544
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.91 E-value=0.27 Score=25.54 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=8.7
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 008550 456 LALAELHVIEGRNGDAVSLL 475 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~ 475 (561)
..+|.++...|++++|...+
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444444433
No 369
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.91 E-value=4.4 Score=34.00 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHH
Q 008550 415 QSAKALKLVGDVHASNASGREKAKKFYESALRLEPG----YLGAALALAELHVIEGRNGDAV 472 (561)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~g~~~~A~ 472 (561)
+++...+.+|..|.+ .+.++++..+-+++++.+. +++++..|+.++.+.|+++.|.
T Consensus 139 ~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666663 5666677777766665432 3556666666666666666653
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.76 E-value=0.24 Score=25.74 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 008550 144 SLLMAKLYRNSRHNRGAVACY 164 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~ 164 (561)
.+.+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 444555555555555555444
No 371
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.74 E-value=1.2 Score=39.72 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008550 249 IHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLS 311 (561)
Q Consensus 249 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 311 (561)
..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345556666666667777777777777777777777777777777777777777766666544
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.73 E-value=9.4 Score=34.19 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=17.1
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHh
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSS 30 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~ 30 (561)
.+.+=+..+++.+++.+|..++..++.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev 39 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEV 39 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHH
Confidence 3445556667777777777776666554
No 373
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.66 E-value=0.43 Score=27.54 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 487 LHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 487 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
++..+|.+-...++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677788888888888888888888765
No 374
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.63 E-value=2.4 Score=45.64 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCChhHHHH------HHHHhHH-hCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------CCCC
Q 008550 353 YIMKGNLLLSMKRPEAAVI------AFRGAQE-LRPDL-RSYQGLVHSYLQFSKVKEALYAAREAMKA--------MPQS 416 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~------~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~ 416 (561)
....|......|.+.+|.+ .+..... +.|+. ..+..++.++...|+.++|+..-.++.-+ .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3455666666777777766 3332222 23444 45888899999999999999887776532 2445
Q ss_pred HHHHHHHHHHHhhhcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----
Q 008550 417 AKALKLVGDVHASNASGREKAKKFYESALRL--------EPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA----- 483 (561)
Q Consensus 417 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----- 483 (561)
...+.+++...... ++...|...+.++..+ .|.-.....+++.++...++++.|+.+++.+.....
T Consensus 1015 ~~~y~nlal~~f~~-~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAV-KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHhhHHHHHHHhc-cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 66677777777776 7778888888877654 233333456778888888999999999999887542
Q ss_pred Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 484 DD----SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 484 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.. ..+..+++.+...+++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 21 56677788888888888877777766544
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.53 E-value=1.1 Score=32.71 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL 379 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 379 (561)
...+|.++...|++++|+..+++++.+
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555544
No 376
>PF12854 PPR_1: PPR repeat
Probab=91.40 E-value=0.54 Score=26.36 Aligned_cols=29 Identities=31% Similarity=0.540 Sum_probs=21.6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008550 380 RPDLRSYQGLVHSYLQFSKVKEALYAARE 408 (561)
Q Consensus 380 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 408 (561)
.|+..+|..+...+.+.|+.++|.+++++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45666677778888888888888877765
No 377
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.38 E-value=11 Score=34.31 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008550 220 VEAQCCIASNDYKGGLELFAELLQR--FPNN--------IHILLEMAKVDAIIGKNDEAILNFEKV 275 (561)
Q Consensus 220 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~ 275 (561)
..+.......++++++..+..++.. .|.+ -.....+|..+...|+.++-.......
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~ 74 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSL 74 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 3466666777788888888888763 2222 245567788888888777655554443
No 378
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=2.2 Score=37.58 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=53.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS 324 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 324 (561)
+=..+...++++.|..+.++.+..+|.++.-+...|.+|.+.|.+.-|+..++..++..|+++.+-....
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 3445667778888888888888888888877788888888888888888888888888887776544433
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.86 E-value=3.9 Score=28.15 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHH
Q 008550 145 LLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQC 224 (561)
Q Consensus 145 ~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (561)
...|.-++..++.++|+..++++++..++...-+..++-+ ..+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l-------------------------------------~qA 52 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYL-------------------------------------IQA 52 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHH-------------------------------------HHH
Confidence 4445556688889999999999999988877766665433 677
Q ss_pred HHHccCHHHHHHHHHHHH
Q 008550 225 CIASNDYKGGLELFAELL 242 (561)
Q Consensus 225 ~~~~~~~~~A~~~~~~~~ 242 (561)
+...|+|.+++.+--.-+
T Consensus 53 ~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 53 HMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888888877655443
No 380
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=1.4 Score=38.64 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=61.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q 008550 223 QCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYA 290 (561)
Q Consensus 223 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 290 (561)
..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|++.+...++..|+.+.+-....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999977654433
No 381
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.73 E-value=12 Score=33.38 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD-------SLHVKLAQVFAATNMLQEALSHYEAA 511 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a 511 (561)
....+|..|+..|++++|.++|+.+....... .+...+..|+...|+.+..+...-+.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44566777777777777777777765443211 56666777777777777666554433
No 382
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.29 E-value=24 Score=36.36 Aligned_cols=150 Identities=15% Similarity=0.105 Sum_probs=57.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHH---HHHHh--
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHDLLSIDPSRPEVFVALS---VLWER-- 329 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~---~~~~~-- 329 (561)
.-.++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-.......-...+...+.++.. .+++ ..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHHH
Confidence 34567788999999998877 22222222233444444443333222224555555554321 2222 22222
Q ss_pred --cCHhHHHHHHHHHHhcc-CCChh-HHHHHHHHHHhcCC--------------hhHHHHHHHHhHHhCCCh----HHHH
Q 008550 330 --KDERGALSYAEKSIRID-ERHIP-GYIMKGNLLLSMKR--------------PEAAVIAFRGAQELRPDL----RSYQ 387 (561)
Q Consensus 330 --~~~~~A~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~----~~~~ 387 (561)
.+...|+.++--+-... |.... .+..+..+....++ ....++-..+.+...... ....
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 57777887775543322 11111 12222333333322 222333333333333221 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008550 388 GLVHSYLQFSKVKEALYAAREA 409 (561)
Q Consensus 388 ~l~~~~~~~~~~~~A~~~~~~~ 409 (561)
..|.-....|++++|+.+|.-+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La 440 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLA 440 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 6677777888888888777653
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.29 E-value=0.8 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 499 NMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 499 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
|+.+.|...|++++...|.++..|.....+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678888888888888888888888777654
No 384
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=14 Score=32.77 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhc------CCCCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhc-----cCCChhH--
Q 008550 287 DEYAMLLKVKCDYSKLSKLVHDLLSI------DPSRPEVFVALSVLWER-KDERGALSYAEKSIRI-----DERHIPG-- 352 (561)
Q Consensus 287 ~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~-----~~~~~~~-- 352 (561)
..++.++++.|+|.+|+.....++.. .|.-..++..-..+|.. .+..++...+..+-.. .|....+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 44566777777787777766555421 22224455555566666 6666655555544332 1222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HH---HHHHHHHHHhcCCHHHHHHHHH--HHHH-HCCCCHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RS---YQGLVHSYLQFSKVKEALYAAR--EAMK-AMPQSAKALKL 422 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~---~~~l~~~~~~~~~~~~A~~~~~--~~~~-~~p~~~~~~~~ 422 (561)
-..-|..++...+|..|..+|-++++-...- .+ +..+...-...+..++--..++ ..++ .......+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 1223555666777888888887777653321 11 1111122222333333333222 1222 22233455555
Q ss_pred HHHHHhhh-cCChHHHHHHHHHHHHhC
Q 008550 423 VGDVHASN-ASGREKAKKFYESALRLE 448 (561)
Q Consensus 423 l~~~~~~~-~~~~~~A~~~~~~a~~~~ 448 (561)
.+..+..+ ..+|..|+..|..-+..+
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el~~D 315 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDELHQD 315 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHhccC
Confidence 55555432 134566666666655444
No 385
>PF13041 PPR_2: PPR repeat family
Probab=89.71 E-value=1.9 Score=26.73 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|..+...+.+.|++++|.++|++..+
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.15 E-value=2.2 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALR 513 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~ 513 (561)
+.+|..|...|+.+.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455556666666666666665553
No 387
>PF13041 PPR_2: PPR repeat family
Probab=89.11 E-value=3.2 Score=25.71 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHH
Q 008550 350 IPGYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSY 393 (561)
Q Consensus 350 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 393 (561)
...|..+-..+.+.|++++|.+.|++..+. .|+..+|..+...+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345666666777777777777777776665 34445555544433
No 388
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.83 E-value=35 Score=36.22 Aligned_cols=63 Identities=19% Similarity=0.339 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHH
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQA 69 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 69 (561)
+-.++..++....|+.|+.+++...+- ++..............|..+|.+|+|++|...|.++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~---~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSP---NPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 446788999999999999877665441 111111111112222267799999999999999986
No 389
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.75 E-value=10 Score=34.12 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCcc--c--c----hhHHHHHHHHHHhcCChhhHHHHHHHHH--hcCCCcHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKA--R--N----LQMSLLMAKLYRNSRHNRGAVACYKECL--RHCPFFIEA 177 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~--~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~ 177 (561)
..++..+|..|-+.++|..|-..+..++... . + ...+..+|++|...++..+|..+..++- ..+..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 4578999999999999999999999987553 1 1 2345678999999999999998888762 333344444
Q ss_pred HHH
Q 008550 178 ITA 180 (561)
Q Consensus 178 ~~~ 180 (561)
...
T Consensus 183 qie 185 (399)
T KOG1497|consen 183 QIE 185 (399)
T ss_pred HHH
Confidence 433
No 390
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.70 E-value=3.2 Score=37.08 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.++..++..+... |+++.++..+++.+..+|-+...|..+-..|...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~-~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIAC-GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555554 5566666666666666666656666666666666666666666555443
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.35 E-value=1.2 Score=42.13 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCc---------ccchhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 110 VKYKIASCHFALGETKAAIVEMEGIPSK---------ARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
....+.+++.-+|+|..|++.++.+... +-....++..|-+|+..++|.+|++.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888999999999999987433 22456778999999999999999999999873
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=88.30 E-value=13 Score=35.50 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHhCCHHHHHHHHHHHHhh
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQRFPNNIH--ILLEM--AKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
....+..++..++|..|.+++..+...-|.+.. .+..+ |.-+...-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345577888999999999999999886444433 33333 44455677888999999987765
No 393
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=88.16 E-value=19 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRINS 516 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~~p 516 (561)
.-|.-|.+.|+...|..+|.+++....
T Consensus 375 LAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 375 LAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 346778899999999999999988754
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.87 E-value=1.7 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=17.4
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008550 229 NDYKGGLELFAELLQRFPNNIHILLEMAK 257 (561)
Q Consensus 229 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 257 (561)
|+.+.+..+|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34556666666666666666666655544
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.83 E-value=1.6 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh
Q 008550 456 LALAELHVIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 456 ~~la~~~~~~g~~~~A~~~~~~~~~~ 481 (561)
+.+|..|..+|+.+.|.+.++..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46777777777777777777777743
No 396
>PF12854 PPR_1: PPR repeat
Probab=86.93 E-value=2 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008550 483 ADDSLHVKLAQVFAATNMLQEALSHYEA 510 (561)
Q Consensus 483 ~~~~~~~~la~~~~~~g~~~~A~~~~~~ 510 (561)
|+..+|..+...|.+.|+.++|.+.|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444555555566666666666655543
No 397
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.79 E-value=32 Score=33.48 Aligned_cols=173 Identities=12% Similarity=0.057 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS 432 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 432 (561)
+..+-.++....+..-....+.+.+....+--+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ +
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk--i 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK--I 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH--h
Confidence 33334444444444444555555555555555566666666655 34455556666666666666555666665554 5
Q ss_pred ChHHHHHHHHHHHHhC-CC--CH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHcCCHHH
Q 008550 433 GREKAKKFYESALRLE-PG--YL---GAALALAELHVIEGRNGDAVSLLERYLKDWADD---SLHVKLAQVFAATNMLQE 503 (561)
Q Consensus 433 ~~~~A~~~~~~a~~~~-p~--~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~ 503 (561)
+.+.+..+|.+++... |. +. +.|..+-. .--.+.+.-+....+.-...... .++..+-.-|....++.+
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 5566666666665432 21 11 11211111 01122333333333332222222 222233345566677888
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
|++.....++.+..|..++.++....+
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 888888888888888777777665443
No 398
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.78 E-value=14 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=24.6
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHH
Q 008550 294 KVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAE 340 (561)
Q Consensus 294 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~ 340 (561)
...+.....+.+++.++..++.++.....+..+|..-+..+.+..+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHH
Confidence 33455555566666655555555555555555555433444444444
No 399
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.73 E-value=25 Score=32.13 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=8.8
Q ss_pred hhhchhHHHHHHHHHHH
Q 008550 53 LFRDREYRRAIHTYKQA 69 (561)
Q Consensus 53 ~~~~~~~~~A~~~~~~a 69 (561)
.-..++++-|.+.|..+
T Consensus 23 ~r~~rd~dlAEEa~~dA 39 (415)
T COG4941 23 ARYLRDLDLAEEALQDA 39 (415)
T ss_pred HHHhcccchHHHHHHHH
Confidence 33445555555555554
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.54 E-value=3.6 Score=36.42 Aligned_cols=54 Identities=20% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLVHD 308 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 308 (561)
.+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.+.+.+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344555556666666666666666665555555555555555555555554443
No 401
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.30 E-value=17 Score=29.87 Aligned_cols=124 Identities=18% Similarity=0.193 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh----cCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 008550 397 SKVKEALYAAREAMKAMPQSAKALKLVGDVHASN----ASG--REKAKKFYESALRLEPGYLGAALALAELHVIEGRNGD 470 (561)
Q Consensus 397 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----~~~--~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~ 470 (561)
+++..|++.+..+.. .+.+.+...+|.++..- .++ .++|.+++.++..+. +..+-+.|...+..-. ++
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k 160 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK 160 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh
Confidence 355556666655544 34455555555554431 122 456777777766553 3445555554443221 11
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccCC
Q 008550 471 AVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMKGV 535 (561)
Q Consensus 471 A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 535 (561)
+....|....-...+..+.-..+.++|.++--+|-++ +++.+-.++.+++..-.|+
T Consensus 161 -------~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv 216 (248)
T KOG4014|consen 161 -------FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGV 216 (248)
T ss_pred -------hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCC
Confidence 1111221100112233344455667777777777665 3666777777777654443
No 402
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.16 E-value=98 Score=38.40 Aligned_cols=103 Identities=11% Similarity=-0.077 Sum_probs=59.2
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHH---HHHHHHHHhcCC
Q 008550 47 IILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVK---YKIASCHFALGE 123 (561)
Q Consensus 47 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~a~~~~~~~~ 123 (561)
...|..|.+.|.+++|...|+++........ . ..++.+.. -....|..++.+
T Consensus 2486 T~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~-------------------~------~~~~~Ey~lWed~WI~Ca~eL~Q 2540 (3550)
T KOG0889|consen 2486 TMVALSYEQLGFWEEAQSLYEKAQVKAREGA-------------------I------PYSESEYKLWEDHWIRCASELQQ 2540 (3550)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHhccc-------------------C------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999976531111 0 11222222 224566666777
Q ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHH
Q 008550 124 TKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITAL 181 (561)
Q Consensus 124 ~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 181 (561)
|+--.+.-+.. .....+-.+..+.-++..-...+.+..+..|+.......+
T Consensus 2541 Wdvl~e~~k~~-------~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~ 2591 (3550)
T KOG0889|consen 2541 WDVLTEFGKHE-------GNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKEL 2591 (3550)
T ss_pred HHHHHHHHhcc-------CCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHH
Confidence 76665555221 1112333444455666666666777766666654444333
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.07 E-value=51 Score=35.10 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=33.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC-CcccchhH----HHHH-HHHHHhcCChhhHHHHHHHHH
Q 008550 114 IASCHFALGETKAAIVEMEGIP-SKARNLQM----SLLM-AKLYRNSRHNRGAVACYKECL 168 (561)
Q Consensus 114 ~a~~~~~~~~~~~A~~~l~~~~-~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~l 168 (561)
--..++...++++|+...+... ..|..... .... |..++.+|++++|+..|.+.-
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3455566666888888877643 22322111 1122 555778888888888888763
No 404
>PRK12798 chemotaxis protein; Reviewed
Probab=85.35 E-value=35 Score=32.48 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=90.9
Q ss_pred CCChHHHHHHHHHHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCcH--HHH
Q 008550 104 AINENEVKYKIASCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKL-YRNSRHNRGAVACYKECLRHCPFFI--EAI 178 (561)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~l~~~p~~~--~~~ 178 (561)
..+..+....-|..-+-.|+-.+|.+.|..+... |...-.++.|... .....++.+|+..|..+--..|.-. ++-
T Consensus 108 ~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAA 187 (421)
T PRK12798 108 KLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAA 187 (421)
T ss_pred CCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3344556666666667788888888888876433 4444444444333 3455678888888888877777532 111
Q ss_pred HHHHHHcCCcccHhHHhhccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH---HH
Q 008550 179 TALAELGATPKDIISLFAQTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPNNIHILL---EM 255 (561)
Q Consensus 179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~l 255 (561)
... ...+....|+.++...+-.+.+..+..++.+.. ..
T Consensus 188 LRR---------------------------------------si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F 228 (421)
T PRK12798 188 LRR---------------------------------------SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRF 228 (421)
T ss_pred HHH---------------------------------------hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 100 023344567777777777777776666543322 22
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhh-CCCC-hHHHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 008550 256 AKVDAIIGKNDEAILNFEKVRSI-DPYI-MTYMDEYAMLLKVKCDYSKLSKLVHDLLSID 313 (561)
Q Consensus 256 a~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 313 (561)
+......++-..- ..+..++.. +|.. ...|..+++.-...|+.+-|.-.-+++..+.
T Consensus 229 ~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 229 VDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 2233333221111 113333332 3332 3455556666666666666665555555543
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.29 E-value=30 Score=31.68 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 333 RGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 333 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
++|+..-.-...+.|..++++-.++.+.+...+...=...=-..+-+...+.. .+..+-.+++...+.+++..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~-------lW~r~lI~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS-------LWDRALIDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh-------hhhHHHHHHHHHHHHHHHHc
Confidence 35666666666677777777666655554332211000000000000111111 12223345666667766654
Q ss_pred C-CCCHHHHHHHHHHHhhh----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---C
Q 008550 413 M-PQSAKALKLVGDVHASN----ASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDWA---D 484 (561)
Q Consensus 413 ~-p~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~ 484 (561)
. |......-.++.++... .-+|..-..+|.-.....|+ |.+-.+.+....+..-...++...+....... .
T Consensus 286 ~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 286 RRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGY 364 (415)
T ss_pred CCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccc
Confidence 3 33333333334343322 13556666667666666664 55556666666666667777777776665422 1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 485 DSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 485 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...+...|.++.++|+.++|...|++++.+.++..+..+...++...
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~~~l 411 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRLDRL 411 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 25778889999999999999999999999999888877776666543
No 406
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.21 E-value=9.1 Score=34.04 Aligned_cols=84 Identities=14% Similarity=-0.023 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 008550 395 QFSKVKEALYAAREAMKAMPQS------AKALKLVGDVHASNASGREKAKKFYESALRLEPGY------LGAALALAELH 462 (561)
Q Consensus 395 ~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~ 462 (561)
........+..+.++....... ......+|.-|... |++++|.++|+.+....... ..+...+..|.
T Consensus 150 ~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~-g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 150 GVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL-GDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECA 228 (247)
T ss_pred ccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3445567788888888765432 34556788889988 99999999999987653322 34667788888
Q ss_pred HHcCChHHHHHHHHHHH
Q 008550 463 VIEGRNGDAVSLLERYL 479 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~ 479 (561)
...|+.+..+.+.-+++
T Consensus 229 ~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 229 KRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 89999888777655443
No 407
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.92 E-value=5.1 Score=36.41 Aligned_cols=61 Identities=30% Similarity=0.314 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q 008550 437 AKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLKDW-ADDSLHVKLAQVFAA 497 (561)
Q Consensus 437 A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~la~~~~~ 497 (561)
|..+|.+|..+.|.+...+..+|.+....|+.-.|+=+|-+++-.. |-+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777666666433 333556666665555
No 408
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=7.6 Score=38.28 Aligned_cols=50 Identities=10% Similarity=-0.021 Sum_probs=40.5
Q ss_pred HHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 116 SCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
.+.++.|+++.|..+..+. ++..-|-.||.+....|++..|.++|.++..
T Consensus 645 elal~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3456789999998877643 3456688999999999999999999999853
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.35 E-value=11 Score=33.49 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=32.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008550 423 VGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERY 478 (561)
Q Consensus 423 l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 478 (561)
.+..|... |.+.+|+.+.++++.++|-+...+..+-.++...|+--.|++.|++.
T Consensus 285 va~~yle~-g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEA-GKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHc-CChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34444444 66666666666666666666666666666666666655555555543
No 410
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.90 E-value=39 Score=35.17 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhC--CCCHHHH----HHHHHHH
Q 008550 390 VHSYLQFSKVKEALYAAREAMKAMPQ-SAKALKLVGDVHASNASGREKAKKFYESALRLE--PGYLGAA----LALAELH 462 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~----~~la~~~ 462 (561)
-.++...++|++|++++..+ .|. -.......|..+.. ..+++-...+-+.+... +...... ...-.+.
T Consensus 497 ~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~--h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~ 571 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE--HDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIG 571 (933)
T ss_pred HHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHhhcCCCCCCchhhcCccchhhee
Confidence 34556778888888887653 222 23455667777775 56677666666665432 1110100 1122223
Q ss_pred HHcCChHHHHHHHHHHHhhCCCh
Q 008550 463 VIEGRNGDAVSLLERYLKDWADD 485 (561)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~ 485 (561)
.-.+++..-...++...+..|+.
T Consensus 572 if~~~~~~~~~Fl~~~~E~s~~s 594 (933)
T KOG2114|consen 572 IFSQNYQILLNFLESMSEISPDS 594 (933)
T ss_pred eeccCHHHHHHHHHHHHhcCCCc
Confidence 33455555555555555555543
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.72 E-value=6.3 Score=33.47 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 008550 469 GDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQN 518 (561)
Q Consensus 469 ~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 518 (561)
+..++..++.++..|++.++..++.++...|+.++|.....++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34556667777778888888889999999999999999999999999943
No 412
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.30 E-value=4.7 Score=36.67 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008550 402 ALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHVI 464 (561)
Q Consensus 402 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 464 (561)
|..+|.+|....|.+...++.+|.+.... |+.-.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~-~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ-GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT-T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34455555555555555555555555554 555555555555554333334455555554444
No 413
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.88 E-value=23 Score=35.20 Aligned_cols=79 Identities=23% Similarity=0.126 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhc
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNA 431 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 431 (561)
.....+..+..+|-.++| +++.++..-.+ .+..+.|+++.|.++..++ ++..-|..+|......
T Consensus 616 ~rt~va~Fle~~g~~e~A-------L~~s~D~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~- 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQA-------LELSTDPDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA- 679 (794)
T ss_pred hhhhHHhHhhhccchHhh-------hhcCCChhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc-
Confidence 344556666666665555 44444443322 3345778888887765543 5677788889988887
Q ss_pred CChHHHHHHHHHHHH
Q 008550 432 SGREKAKKFYESALR 446 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (561)
+++..|.++|.++..
T Consensus 680 ~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 680 GELPLASECFLRARD 694 (794)
T ss_pred ccchhHHHHHHhhcc
Confidence 999999999888743
No 414
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.50 E-value=12 Score=29.65 Aligned_cols=53 Identities=17% Similarity=0.007 Sum_probs=35.6
Q ss_pred hCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 481 DWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 481 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
.....+.....+.-....|++.-|.+....++..+|+|..++...+...+.++
T Consensus 66 l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 66 LAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 33344445556666677788888888888888888888888888877777665
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.47 E-value=47 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhH-------HhCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQ-------ELRPDL--RSYQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
...+.+++.-+|+|..|++.++..- ...|.. ..++.+|-+|..+++|.+|++.|..++-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777765431 111221 3467778888888888888887777653
No 416
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.34 E-value=34 Score=30.11 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhh-----CCCh----HHHHHHHHHH-HHcCCHHHHHHHHHHHHh
Q 008550 469 GDAVSLLERYLKD-----WADD----SLHVKLAQVF-AATNMLQEALSHYEAALR 513 (561)
Q Consensus 469 ~~A~~~~~~~~~~-----~~~~----~~~~~la~~~-~~~g~~~~A~~~~~~al~ 513 (561)
+.|...|++++.. .|.+ .+..+.+..| .-.|+.++|++..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666543 3433 2334444444 447888888877776654
No 417
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.21 E-value=83 Score=34.43 Aligned_cols=24 Identities=13% Similarity=-0.065 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhc
Q 008550 110 VKYKIASCHFALGETKAAIVEMEG 133 (561)
Q Consensus 110 ~~~~~a~~~~~~~~~~~A~~~l~~ 133 (561)
.-+...+-++..++|.+|.+...+
T Consensus 679 lVLa~vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 679 LVLAKVRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677888999999998886
No 418
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.83 E-value=3.5 Score=37.59 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=89.1
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGET 124 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 124 (561)
..-..|...++.++|+.|..-|.+++......++. ...+..+-...........+..++.+-++.+.+
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~------------~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~ 291 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRD------------REKEQENRIPPLRELRFSIRRNLAAVGLKVKGR 291 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccc------------cccccccccccccccccccccchHHhcccccCC
Confidence 33446677899999999999999998763211111 111111100000111134566688999999999
Q ss_pred HHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHH
Q 008550 125 KAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAE 183 (561)
Q Consensus 125 ~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 183 (561)
..|+..... +...+....+++..+..+....++++|+..+..+....|.+......+..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 999876554 44557778899999999999999999999999999999998877766543
No 419
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.79 E-value=7.4 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=11.7
Q ss_pred CChHHHHHHHHHHHHhCCCC
Q 008550 432 SGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~~p~~ 451 (561)
+++.+|+..-+..+++.|..
T Consensus 380 nd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 380 NDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cCHHHHHHHHHHHhccCCce
Confidence 55666666666666655543
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.53 E-value=41 Score=32.26 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHHh-CCChH--HHHHH--HHHHHhcCCHHHHHHHHHHHHHH
Q 008550 353 YIMKGNLLLSMKRPEAAVIAFRGAQEL-RPDLR--SYQGL--VHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 353 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
....+..++..++|..|...+...... .+... .+..+ |..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 355667778889999999999888875 33333 23333 44456778888999888887764
No 421
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.86 E-value=1.6e+02 Score=36.81 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC-HHHHHH---HHHHHHHcC-ChHHHHHHHHHHH-hhCCCh---HHH
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY-LGAALA---LAELHVIEG-RNGDAVSLLERYL-KDWADD---SLH 488 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~---la~~~~~~g-~~~~A~~~~~~~~-~~~~~~---~~~ 488 (561)
.+....|.+.... |-++-++..+.+...+..-. .++... -+.+|.... ....++++.+..- ...++. +.+
T Consensus 2737 ~~in~fakvArkh-~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff 2815 (3550)
T KOG0889|consen 2737 WAINRFAKVARKH-GLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFF 2815 (3550)
T ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHH
Confidence 3445556666665 66777777766665543211 122222 233333332 3444444443321 111222 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQ 531 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 531 (561)
...|....++|+.++|-..|..|++++-.-+.+|...+.....
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999998888888887765443
No 422
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.33 E-value=3.3 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAM 410 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~ 410 (561)
|..+...|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4455555666666666666665544
No 423
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=73 Score=32.17 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDL-------RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHA 428 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 428 (561)
-|.-+++..+|..+++.|...+..-|.+ .....++.||..+.+.+.|.++++++-+.+|.++-....+-.+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3444455555555555555555544432 113344555555555555555555555555555544444444444
Q ss_pred hhcCChHHHHHHHHHHH
Q 008550 429 SNASGREKAKKFYESAL 445 (561)
Q Consensus 429 ~~~~~~~~A~~~~~~a~ 445 (561)
.. +.-++|+.+..+..
T Consensus 440 ~E-~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 440 AE-DKSEEALTCLQKIK 455 (872)
T ss_pred Hh-cchHHHHHHHHHHH
Confidence 43 55555555554443
No 424
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=79.14 E-value=3.5 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
|..+-..|.+.|++++|...|+++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566667777777777777776654
No 425
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.09 E-value=40 Score=28.86 Aligned_cols=61 Identities=23% Similarity=0.240 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC
Q 008550 390 VHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGY 451 (561)
Q Consensus 390 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 451 (561)
..-+.+.+...+|+...+.-++..|.+......+-.++.-. |++++|...++-+-.+.|+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcva-Gdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVA-GDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhc-chHHHHHHHHHHHhhcCccc
Confidence 34456677778888888877787887777777777777776 88888888887777777765
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.74 E-value=30 Score=27.29 Aligned_cols=49 Identities=10% Similarity=0.044 Sum_probs=27.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHH
Q 008550 392 SYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYE 442 (561)
Q Consensus 392 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 442 (561)
.+...+.+...+.+++.++..++.++..+..+..++... +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~--~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY--DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH--CHHHHHHHHH
Confidence 334445666666666666666555566666666666542 3344444444
No 427
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=77.96 E-value=9.1 Score=30.42 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCC--------------CCch--------hhhHHHHHHHHHHhhhchhHHH
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAING--------------ETSP--------HLKAENLIILGDSLFRDREYRR 61 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~--------------~~~~--------~~~~~~~~~~g~~~~~~~~~~~ 61 (561)
|..-+..+-..|.+..|...++.+.++++... ...+ +....-.+.+|..||..++|++
T Consensus 13 L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD~kEy~R 92 (142)
T PF04049_consen 13 LRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFDCKEYDR 92 (142)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhchhHHHH
Confidence 55667778889999999999999998872111 0000 1233477889999999999999
Q ss_pred HHHHHHHHH
Q 008550 62 AIHTYKQAL 70 (561)
Q Consensus 62 A~~~~~~al 70 (561)
|..+++...
T Consensus 93 aA~~L~~~~ 101 (142)
T PF04049_consen 93 AAHVLKDCK 101 (142)
T ss_pred HHHHHccCC
Confidence 999988754
No 428
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=77.70 E-value=58 Score=29.92 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHH----HhhcccCccc
Q 008550 4 PKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQA----LQYYKIVPKQ 79 (561)
Q Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~ 79 (561)
.+...+.++.++++...+..++..+... +.=.+.+++.+.++.+.| ++.+....+.. +..-|....-
T Consensus 102 ~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--------pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L 172 (301)
T TIGR03362 102 RVADYQELLAQADWAALLQRVEQSLSLA--------PFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLEL 172 (301)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--------chhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhc
Confidence 3456667777778778777777777652 334457788888888877 45554444433 3444443322
Q ss_pred cccc--------hhhhcccCCCCC-Cccc---ccccCCChHHHHHHHHHHHHhcCCHHHHHHHHhc-CCCc--cc-chhH
Q 008550 80 NSTS--------SRSSLSTSNRSS-SPNS---FNVSAINENEVKYKIASCHFALGETKAAIVEMEG-IPSK--AR-NLQM 143 (561)
Q Consensus 80 ~~~~--------~~~~~~~~~~~~-a~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~--~~-~~~~ 143 (561)
...- .+..+....... .... .....-.+......-+..+...|..+.|+..++. +... ++ ....
T Consensus 173 ~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~ 252 (301)
T TIGR03362 173 KFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHW 252 (301)
T ss_pred ccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHH
Confidence 1110 111111110000 0000 0001111223334557888899999999999997 4422 32 2334
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhc
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRH 170 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 170 (561)
.+.+++++...|.++-|...|+.+.+.
T Consensus 253 rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 253 RLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 467899999999999999999988654
No 429
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.98 E-value=13 Score=35.52 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHH-HHHHHHHh
Q 008550 233 GGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLS-KLVHDLLS 311 (561)
Q Consensus 233 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~ 311 (561)
+|+.+++.++...|.|......+.++|...|-...|...|...--..-..-..-+.+..-....|....+. ..+..+..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred cCCCC-HHHHHHHHHHHHhcCHhHHHHHHH
Q 008550 312 IDPSR-PEVFVALSVLWERKDERGALSYAE 340 (561)
Q Consensus 312 ~~~~~-~~~~~~l~~~~~~~~~~~A~~~~~ 340 (561)
....+ .++-..+..+|..|.|.+..+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.89 E-value=53 Score=28.60 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=34.4
Q ss_pred HHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc
Q 008550 486 SLHVKLAQVFA---------ATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQMK 533 (561)
Q Consensus 486 ~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 533 (561)
..+...|..+. ..++...|..++++|+.++|+ ..+...+.++.+.++
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 45666677663 446788999999999999974 556666777776664
No 431
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=75.75 E-value=82 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPN 247 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~ 247 (561)
.|..++..|+|+-|...|+.+.+...+
T Consensus 214 LAD~aFml~Dy~~A~s~Y~~~k~Df~~ 240 (414)
T PF12739_consen 214 LADLAFMLRDYELAYSTYRLLKKDFKN 240 (414)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHhh
Confidence 489999999999999999988875543
No 432
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=75.62 E-value=45 Score=27.60 Aligned_cols=185 Identities=13% Similarity=0.051 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-----hcCCHhHHHHHHHHHHhcCCCCHHHH
Q 008550 247 NNIHILLEMAKVDAI-IGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLK-----VKCDYSKLSKLVHDLLSIDPSRPEVF 320 (561)
Q Consensus 247 ~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~ 320 (561)
..|+....+|..+.- +.++++|..+|..-..-+ ..+...+.+|..+. ..++...|+..+..+.. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 456677777775543 456788887777655433 23455556665443 24467778888877765 4567777
Q ss_pred HHHHHHHHh------cC--HhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHH
Q 008550 321 VALSVLWER------KD--ERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHS 392 (561)
Q Consensus 321 ~~l~~~~~~------~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 392 (561)
..+|.+... ++ ..+|.+++.++-.+. +..+.+.+...|+...+ + +....|...--...+..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~--k-------~~t~ap~~g~p~~~~~~ 177 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKE--K-------FKTNAPGEGKPLDRAEL 177 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccch--h-------hcccCCCCCCCcchhhh
Confidence 777777654 23 558888888886554 45566666666553321 1 11112321001112344
Q ss_pred HHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh---cCChHHHHHHHHHHHHh
Q 008550 393 YLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN---ASGREKAKKFYESALRL 447 (561)
Q Consensus 393 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~a~~~ 447 (561)
+.-..+.+.|.++--++.++. ++.+..++..+|..- ..+.++|..+-.++.++
T Consensus 178 ~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 455667788888888877763 566666777776542 12346666666666554
No 433
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=74.29 E-value=7.9 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|..+...|.+.|++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666666666666666666544
No 434
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=72.55 E-value=21 Score=24.51 Aligned_cols=28 Identities=4% Similarity=-0.001 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH
Q 008550 503 EALSHYEAALRINSQNEAAKKGLERLEK 530 (561)
Q Consensus 503 ~A~~~~~~al~~~p~~~~~~~~l~~l~~ 530 (561)
+|++.+.+++...|+++.......++..
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 3444455555667777765554444443
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.20 E-value=69 Score=28.23 Aligned_cols=46 Identities=28% Similarity=0.276 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALR-----LEPGYLG---AALALAELH-VIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~~~~ 480 (561)
+.|...|++|+. +.|.+|- ...+.+..+ ...|+.++|++..++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 556666666654 4566654 334444444 457889998888877764
No 436
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.96 E-value=8.7 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhc
Q 008550 144 SLLMAKLYRNSRHNRGAVACYKECLRH 170 (561)
Q Consensus 144 ~~~l~~~~~~~~~~~~A~~~~~~~l~~ 170 (561)
|..+-..|.+.|++++|...|.++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 556677788888888888888887653
No 437
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.73 E-value=1.4e+02 Score=31.62 Aligned_cols=107 Identities=10% Similarity=-0.029 Sum_probs=61.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHhCCC-------C-HH--HHHHHHHHHH------------HcCChHHHH--HHHHH
Q 008550 422 LVGDVHASNASGREKAKKFYESALRLEPG-------Y-LG--AALALAELHV------------IEGRNGDAV--SLLER 477 (561)
Q Consensus 422 ~l~~~~~~~~~~~~~A~~~~~~a~~~~p~-------~-~~--~~~~la~~~~------------~~g~~~~A~--~~~~~ 477 (561)
..|.-+... |++.+|++.|+.++-.-|- . .+ -+...+.-|. ..+..+++. ..|=.
T Consensus 996 ~~gy~ltt~-gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 996 QKGYKLTTE-GKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHhhhcc-CcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 344445555 9999999999988754331 1 11 1222222121 112333341 11111
Q ss_pred HHhhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 008550 478 YLKDWADD--SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLE 529 (561)
Q Consensus 478 ~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 529 (561)
-..+.|.. -++..--..+.+++++..|...-.+.+++.|..+.+......+.
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~ 1128 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQ 1128 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 12333444 23444456788999999999999999999998887765544443
No 438
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=71.63 E-value=82 Score=34.46 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH
Q 008550 118 HFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC 167 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 167 (561)
...+.++.+=+..++.+...+. .+..-.+-...|+|+.|+..+.++
T Consensus 861 q~SqkDPkEyLP~L~el~~m~~----~~rkF~ID~~L~ry~~AL~hLs~~ 906 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKMET----LLRKFKIDDYLKRYEDALSHLSEC 906 (1265)
T ss_pred HHhccChHHHHHHHHHHhhchh----hhhheeHHHHHHHHHHHHHHHHHc
Confidence 3446777777777776653321 111122222345566665555443
No 439
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=71.54 E-value=1.3 Score=44.40 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCc----ccchhHHHHHHHHHHhcCChhhHHHHHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSK----ARNLQMSLLMAKLYRNSRHNRGAVACYKE 166 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 166 (561)
....+.-+..++..|++..|..++..+... .......+..+.+....|+++.|+..+..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 456777889999999999999999987532 23345567789999999999999998875
No 440
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=71.48 E-value=4.1 Score=37.17 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 454 AALALAELHVIEGRNGDAVSLLERYLKDWADD-SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 454 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
...+++.+-.+.+.+..|+..-..+++..++. ..++..+..+....++++|.+.++.+....|++..+...+.......
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 34446777777777777777666666655544 67888888888888888888888888888888888877777666544
Q ss_pred c
Q 008550 533 K 533 (561)
Q Consensus 533 ~ 533 (561)
.
T Consensus 357 ~ 357 (372)
T KOG0546|consen 357 K 357 (372)
T ss_pred H
Confidence 3
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.44 E-value=31 Score=35.31 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 008550 498 TNMLQEALSHYEAALRINSQNEAAKKGLERL 528 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 528 (561)
.+++.+|++.-+...++.|........+..+
T Consensus 379 And~~kaiqAae~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence 4678888888888888877665544444443
No 442
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=70.91 E-value=87 Score=28.82 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHH----HhcCCCcHHHHHHHH
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKEC----LRHCPFFIEAITALA 182 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----l~~~p~~~~~~~~l~ 182 (561)
.+..-.+-..+ ..+++.+.++.+++ +...|.-.+..++.+.+..+.| ++.+......- +..-|.-.
T Consensus 100 ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~------- 170 (301)
T TIGR03362 100 ADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLL------- 170 (301)
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChh-------
Confidence 33333333333 67788888888887 4556878888899999999999 45554444433 34444311
Q ss_pred HHcCCcc------cHhHHhhccccccC---CCC-CCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CH
Q 008550 183 ELGATPK------DIISLFAQTPNRSG---RAP-FDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELLQRFPN---NI 249 (561)
Q Consensus 183 ~~~~~~~------~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~ 249 (561)
.+.+.-| .....+........ ..+ ........|......+..+...+..+.|+..++..+...++ ..
T Consensus 171 ~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf 250 (301)
T TIGR03362 171 ELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERF 250 (301)
T ss_pred hcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH
Confidence 1111111 11111111000000 000 00011122555555677778888888888888875543222 23
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 008550 250 HILLEMAKVDAIIGKNDEAILNFEKVRSI 278 (561)
Q Consensus 250 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 278 (561)
...+.+++++...|.++-|...+..+.+.
T Consensus 251 ~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 251 HWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556788888888888888888877654
No 443
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.00 E-value=48 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.008 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhh
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASN 430 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 430 (561)
......+...+..|++.-|..+...++..+|++..+....+.++.++
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 33444455555666666666666666666666666666666665554
No 444
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=69.29 E-value=60 Score=26.33 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=72.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccch--hhhcccCCCCCCccccc------ccCCChHHHHHHHHH
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSS--RSSLSTSNRSSSPNSFN------VSAINENEVKYKIAS 116 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~a~ 116 (561)
.....++....+|+.++|.+.+.++...--.......... ...+......-.+-... ....+........+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 3466788888999999999999998665321111111111 00000000000000000 112233567788899
Q ss_pred HHHhcCCHHHHHHHHhcCCCc--------c-cchhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 117 CHFALGETKAAIVEMEGIPSK--------A-RNLQMSLLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 117 ~~~~~~~~~~A~~~l~~~~~~--------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
-.++.|+...|...++.+... | .........+..+...|++.+|...+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999875432 1 1234456778889999999999999998874
No 445
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=69.12 E-value=16 Score=19.81 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMK 411 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 411 (561)
|..+..++.+.|+++.|..+++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666655543
No 446
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.03 E-value=92 Score=28.75 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccCCChhHH---HHHHHHHHhcCChhHHHHHHHHh
Q 008550 335 ALSYAEKSIRIDERHIPGY---IMKGNLLLSMKRPEAAVIAFRGA 376 (561)
Q Consensus 335 A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~ 376 (561)
+-..|++..+.-|+..... ...|.+++..++|.+....+..+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 4566788887777655432 34688888888888877766554
No 447
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=68.08 E-value=12 Score=25.99 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.+..+...|...=+.|+|++|+.+|.++++..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34456777888889999999999999998863
No 448
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=67.96 E-value=1.1e+02 Score=29.04 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHH--HHHHhCCHHHHHHHHHH
Q 008550 221 EAQCCIASNDYKGGLELFAELLQRFPNN-----IHILLEMAK--VDAIIGKNDEAILNFEK 274 (561)
Q Consensus 221 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~--~~~~~~~~~~A~~~~~~ 274 (561)
.+..++..++|..|...|.++....++. ...+..++. .++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4668889999999999999999875421 233344444 44566788899999985
No 449
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.94 E-value=25 Score=29.76 Aligned_cols=43 Identities=21% Similarity=0.141 Sum_probs=22.3
Q ss_pred HHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 372 AFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 372 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
..++.+...|+...+..++.++...|+.++|.....++....|
T Consensus 133 ~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 133 WAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344444445555555555555555555555555555555555
No 450
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.38 E-value=1.7e+02 Score=30.41 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=65.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHhh
Q 008550 356 KGNLLLSMKRPEAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAK------ALKLVGDVHAS 429 (561)
Q Consensus 356 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~ 429 (561)
...++.-.|+|+.|+.++-+ ....+-+.+++.++..+..+ ..-.-..-...+...+.++. ....... .+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gL--L~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~ 339 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGL--LRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFE 339 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT--------------------------HHHHHHHHHH-TTT
T ss_pred HHHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCC--CCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHh
Confidence 44567778999999998876 11111123355554444332 22222211445555554422 2222222 223
Q ss_pred hcCChHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHHcCCh--------------HHHHHHHHHHHhhCCCh----HHHH
Q 008550 430 NASGREKAKKFYESALRLE-PGYLG-AALALAELHVIEGRN--------------GDAVSLLERYLKDWADD----SLHV 489 (561)
Q Consensus 430 ~~~~~~~A~~~~~~a~~~~-p~~~~-~~~~la~~~~~~g~~--------------~~A~~~~~~~~~~~~~~----~~~~ 489 (561)
. .+..+|..+|--+-... |+... .+..+..+....+++ ...++-..+.+...... .+..
T Consensus 340 ~-td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 I-TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp T-T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred c-cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Confidence 3 67788888876543322 22222 223334443333322 22333333333343322 5667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 008550 490 KLAQVFAATNMLQEALSHYEAAL 512 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al 512 (561)
..|.-....|++++|+..|.-+-
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 77888888899999999888764
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.68 E-value=2.2e+02 Score=31.46 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=116.4
Q ss_pred HHHHhcCCHHHHHHHHhcCCCc--ccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhH
Q 008550 116 SCHFALGETKAAIVEMEGIPSK--ARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIIS 193 (561)
Q Consensus 116 ~~~~~~~~~~~A~~~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~ 193 (561)
.+++-..++..-..++.-.... -..+...+.+|.+|...|...+|+.+|.++..-.... ++...+..-..-
T Consensus 893 e~lfg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p------ 965 (1480)
T KOG4521|consen 893 ERLFGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLP------ 965 (1480)
T ss_pred hhhhcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcC------
Confidence 3333344455555555443221 2345667899999999999999999999998765432 244444322111
Q ss_pred HhhccccccCCCCCC-CCChhhHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCC-CH---HHHHHHHHHHHHhCCHHH
Q 008550 194 LFAQTPNRSGRAPFD-HLDSSRWLHRYVEAQCCI-ASNDYKGGLELFAELLQRFPN-NI---HILLEMAKVDAIIGKNDE 267 (561)
Q Consensus 194 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~-~~---~~~~~la~~~~~~~~~~~ 267 (561)
.......+. ...+.....+|..+.-.+ ..+-.+.++++-..+++.-|+ ++ .....+=.-+...|.+.+
T Consensus 966 ------~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~q 1039 (1480)
T KOG4521|consen 966 ------KRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQ 1039 (1480)
T ss_pred ------CCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHH
Confidence 000011111 111222245555555444 456778888988899886443 33 233333444556677777
Q ss_pred HHHHHHHHHhhCCCC---hHHHHHHHHHHHhcCCHhH------------HHH-HHHHHHhcCCCCH-HHHHHHHHHHHh-
Q 008550 268 AILNFEKVRSIDPYI---MTYMDEYAMLLKVKCDYSK------------LSK-LVHDLLSIDPSRP-EVFVALSVLWER- 329 (561)
Q Consensus 268 A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~------------A~~-~~~~~~~~~~~~~-~~~~~l~~~~~~- 329 (561)
|...+- .+|+. ...+..+..+++..|.++. ... +++.+-+..|-.. ..|..+-..+..
T Consensus 1040 Ay~ai~----~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~R 1115 (1480)
T KOG4521|consen 1040 AYKAIL----RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVAR 1115 (1480)
T ss_pred HHHHHH----cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhh
Confidence 765433 34553 2456667777777776543 333 3444444444443 344444444455
Q ss_pred cCHhHHHH-HHHHHHhc
Q 008550 330 KDERGALS-YAEKSIRI 345 (561)
Q Consensus 330 ~~~~~A~~-~~~~~~~~ 345 (561)
+++.+|-. .|+.+..+
T Consensus 1116 hN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1116 HNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred cchhHHHHHHHHHHHHh
Confidence 88876554 45655554
No 452
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.48 E-value=15 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 43 AENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 43 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
+..+...|-.+-+.|+|.+|+.+|+++++.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345666777788899999999999998775
No 453
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.96 E-value=1.1e+02 Score=27.70 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HHhCCH-H---HHHHHHHHHHhhCCCChHHHHHHHHH
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPN--NIHILLEMAKVD---AIIGKN-D---EAILNFEKVRSIDPYIMTYMDEYAML 292 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~---~~~~~~-~---~A~~~~~~~~~~~~~~~~~~~~l~~~ 292 (561)
...+...++|++=-..+.+......+ ..+..+..+... ...... + .-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 56667778887777777776643221 111112222111 111111 1 24455555566677777776666665
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChh
Q 008550 293 LKVKCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPE 367 (561)
Q Consensus 293 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 367 (561)
+....=--.....- +.....-|.... .-.+.|...+.+++.++|....+...+-.+-...|.++
T Consensus 87 ~~~~Aw~~RG~~~A------~~V~~~~W~~~~-----~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDIRGSGYA------STVTEAQWLGAH-----QACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHccchh------cccCHHHHHHHH-----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 54321000000000 000111221111 23457777888888888888877777777777777665
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=64.77 E-value=20 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhCCChHHH
Q 008550 470 DAVSLLERYLKDWADDSLH 488 (561)
Q Consensus 470 ~A~~~~~~~~~~~~~~~~~ 488 (561)
.|..+|++.+...|+...|
T Consensus 5 RAR~IyeR~v~~hp~~k~W 23 (32)
T PF02184_consen 5 RARSIYERFVLVHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHhCCCchHH
Confidence 3334444444333333333
No 455
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=62.85 E-value=1.6e+02 Score=28.79 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhHHh--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008550 352 GYIMKGNLLLSMKRPEAAVIAFRGAQEL--RPDLRSYQGLVHSYLQFSKVKEALYAAREAMKA 412 (561)
Q Consensus 352 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 412 (561)
....+.+.++..|..++++..+..-+.. .|++.+++.+...+.+.|++..|.++...++..
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 3446667777888888888877765443 677777777888888888888888877766543
No 456
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.68 E-value=1.1e+02 Score=27.06 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHcCChHHHHHHHHHHHhh
Q 008550 435 EKAKKFYESALR-----LEPGYLG---AALALAELH-VIEGRNGDAVSLLERYLKD 481 (561)
Q Consensus 435 ~~A~~~~~~a~~-----~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~~~~~ 481 (561)
+.|...|+.|++ +.|.+|- ...+.+..| .-+++.++|....++++..
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666654 3455543 223333333 3457777777666666553
No 457
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.14 E-value=1.2e+02 Score=27.31 Aligned_cols=98 Identities=14% Similarity=0.021 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCC---ChhH---HHHHHHHHHhcCChhHHHHHHHHhHHhCCCh----HH
Q 008550 317 PEVFVALSVLWER-KDERGALSYAEKSIRIDER---HIPG---YIMKGNLLLSMKRPEAAVIAFRGAQELRPDL----RS 385 (561)
Q Consensus 317 ~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~ 385 (561)
.++|.++|..|.+ ++.+.+.++..+.+...-. ..++ ...+|.+|..+.-.++.++.....++...+. +.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 3566666666666 6666666666655543211 1122 2345555544444555555555555554443 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCC
Q 008550 386 YQGLVHSYLQFSKVKEALYAAREAMKAMP 414 (561)
Q Consensus 386 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 414 (561)
-...|.......++.+|-..+-.++..+.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 22334445555667777777666655443
No 458
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.03 E-value=75 Score=24.84 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhh-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 460 ELHVIEGRNGDAVSLLERYLKD-WADDSLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.++..+|+-++--+.+....+. .++++++..+|..|.+.|+..+|-+.+.+|-+.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566666666666665532 244477777777777777777777777777654
No 459
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.02 E-value=19 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.+..+...|-..=+.|+|++|+.+|.++++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 34456777778889999999999999999873
No 460
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.94 E-value=45 Score=34.42 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=75.2
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH--cCChHHHHHHHHHHHhhCCCh-HHHHHHHHHHH
Q 008550 424 GDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVI--EGRNGDAVSLLERYLKDWADD-SLHVKLAQVFA 496 (561)
Q Consensus 424 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~-~~~~~la~~~~ 496 (561)
+..+++. +++..+.--|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|.. .++...+.+|.
T Consensus 60 ~n~~~~K-~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~ 138 (748)
T KOG4151|consen 60 GNKLFQK-RDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYE 138 (748)
T ss_pred hhHHhhh-hhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHH
Confidence 3444454 66677766666666666632 2334445555544 467888888777788777776 77788888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 497 ATNMLQEALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 497 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
..+.++-|.+...-.....|.++.+..-..+++..+
T Consensus 139 al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 139 ALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 888888888888888888898877777666665544
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.10 E-value=1.5e+02 Score=28.18 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=91.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-----CCC-
Q 008550 218 RYVEAQCCIASNDYKGGLELFAELLQR-FPN--------NIHILLEMAKVDAIIGKNDEAILNFEKVRSID-----PYI- 282 (561)
Q Consensus 218 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~- 282 (561)
+++....+..++++.+|..+-+..+.. .-. ....|+.+..+|...|+...-...+...+... ...
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~q 208 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQ 208 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhH
Confidence 334445556678999998887766642 111 24677888888888998777666666555432 111
Q ss_pred hHHHHHHHHHHHhcCCHhHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHh-cCHhHHHHHHHHHHhccCCCh
Q 008550 283 MTYMDEYAMLLKVKCDYSKLSKLVHDLLSI--DP--SRPEVFVALSVLWER-KDERGALSYAEKSIRIDERHI 350 (561)
Q Consensus 283 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~l~~~~~~-~~~~~A~~~~~~~~~~~~~~~ 350 (561)
......+-+.|...+.|+.|.+...+..-- .. ......+.+|.+..- ++|..|.+++-+++...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 233455667788888999998877665411 11 124567888988888 999999999999999999744
No 462
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.56 E-value=20 Score=24.08 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
.+...|...-+.|+|++|+.+|.++++.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566677778899999999999999886
No 463
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=60.37 E-value=17 Score=29.46 Aligned_cols=70 Identities=19% Similarity=0.167 Sum_probs=51.2
Q ss_pred chHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhh
Q 008550 3 VPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQY 72 (561)
Q Consensus 3 ~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 72 (561)
..+..++..+..|+...|......+-+...-....-|-.....-...+..+...|+|.+|-..+..++..
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~ 146 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDG 146 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 3567889999999999999877666443222222345566777888999999999999999999999863
No 464
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=59.91 E-value=87 Score=31.69 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=46.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhcCCHhHHHHHH
Q 008550 227 ASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIMTYMDEYAMLLKVKCDYSKLSKLV 306 (561)
Q Consensus 227 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 306 (561)
+....+.+....+.-+.....+....+..+..+-..|..++|-.+|++.+..+|+ +.++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 4444555555555444444444445555566666666666666666666666666 45556666666666666666655
Q ss_pred H
Q 008550 307 H 307 (561)
Q Consensus 307 ~ 307 (561)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 465
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=59.41 E-value=27 Score=18.83 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhc
Q 008550 504 ALSHYEAALRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 504 A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 532 (561)
.++.-..++..+|.|..+|.....+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 35667788889999999998888876653
No 466
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.13 E-value=21 Score=24.53 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHHHH
Q 008550 432 SGREKAKKFYESALR 446 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (561)
|++++|+.+|..+++
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666666654
No 467
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.90 E-value=1.5e+02 Score=27.14 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHH
Q 008550 40 HLKAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHF 119 (561)
Q Consensus 40 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 119 (561)
+.-.-....+|.+|-+.++|+.|...+.-. ..+ . |......+ .....+.++|+.|+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~---t-------------g~~~~d~~-------~kl~l~iriarlyL 155 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLD---T-------------GQKAYDVE-------QKLLLCIRIARLYL 155 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-Ccc---c-------------chhhhhhH-------HHHHHHHHHHHHHH
Confidence 444556788999999999999998776532 221 1 00000000 11346788999999
Q ss_pred hcCCHHHHHHHHhcC--C-CcccchhHH----HHHHHHHHhcCChhhHHHHHHHHHh
Q 008550 120 ALGETKAAIVEMEGI--P-SKARNLQMS----LLMAKLYRNSRHNRGAVACYKECLR 169 (561)
Q Consensus 120 ~~~~~~~A~~~l~~~--~-~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~l~ 169 (561)
..++..+|..+..+. + ....+.... ...+++.-..+++-+|...|-++..
T Consensus 156 e~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 156 EDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred hcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988873 2 223444444 3446666667888888877776654
No 468
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=56.60 E-value=2e+02 Score=28.07 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCChHHHH
Q 008550 416 SAKALKLVGDVHASNASGREKAKKFYESALRLEPGY----LGAALALAELHVIEGRNGDAVSLLERYLK--DWADDSLHV 489 (561)
Q Consensus 416 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 489 (561)
++.-.-......... .+.+.+..++-+.- ..|.. +.....+.+.+...|..++++..+..=+. +.|++-.+.
T Consensus 65 S~~dld~fvn~~~~~-~~~d~~~~~L~k~R-~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 65 SSLDLDIFVNNVESK-DDLDEVEDVLYKFR-HSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred cHHHHHHHHhhcCCH-hHHHHHHHHHHHHH-cCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 333333334444443 55566666666533 23322 23345778889999999999999987665 347777888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCccHHH-HHHHHHHHHh
Q 008550 490 KLAQVFAATNMLQEALSHYEAALRI-NSQNEAA-KKGLERLEKQ 531 (561)
Q Consensus 490 ~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~-~~~l~~l~~~ 531 (561)
.+-..+.+.|++..|.+........ ..+++.. ...+..++.-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8889999999999999888766544 3444332 3333334443
No 469
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.51 E-value=96 Score=27.09 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=59.5
Q ss_pred HhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcccCCCCCCcccccccCCChHHHHHHHHHHHHhcCCHHH-H-HH
Q 008550 52 SLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLSTSNRSSSPNSFNVSAINENEVKYKIASCHFALGETKA-A-IV 129 (561)
Q Consensus 52 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-A-~~ 129 (561)
-.+..|+|+.|+....-+++.+-..|+....-....+ .+-...-+......|..-+ . ..
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-------------------aeev~~~A~~~~~ag~~~e~~~~~ 152 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-------------------AEEVANAALKAASAGESVEPYFLR 152 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-------------------HHHHHHHHHHHHHcCCCCChHHHH
Confidence 3577899999999999999987544432211100000 1223334444445554211 1 12
Q ss_pred HHhcCC---Ccccchh--HHHHHHHHHH---------hcCChhhHHHHHHHHHhcCCCc
Q 008550 130 EMEGIP---SKARNLQ--MSLLMAKLYR---------NSRHNRGAVACYKECLRHCPFF 174 (561)
Q Consensus 130 ~l~~~~---~~~~~~~--~~~~l~~~~~---------~~~~~~~A~~~~~~~l~~~p~~ 174 (561)
.+..+. .-|+... .+-..|..++ ..++...|+.++++++..+|..
T Consensus 153 ~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 153 VFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 233331 1244333 4455677663 4567889999999999999863
No 470
>PRK12798 chemotaxis protein; Reviewed
Probab=56.25 E-value=1.9e+02 Score=27.78 Aligned_cols=209 Identities=15% Similarity=0.115 Sum_probs=120.6
Q ss_pred HHHHHHHhcCHhHHHHHHHHHHhc-cCCChhHHHHHH-HHHHhcCChhHHHHHHHHhHHhCCCh---H-HHHHHHHHHHh
Q 008550 322 ALSVLWERKDERGALSYAEKSIRI-DERHIPGYIMKG-NLLLSMKRPEAAVIAFRGAQELRPDL---R-SYQGLVHSYLQ 395 (561)
Q Consensus 322 ~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~~~~---~-~~~~l~~~~~~ 395 (561)
.-...|..|+-.++.+.+...-.. .|.....+..+. -......+...|+..|+.+--..|.. + ++..-..+...
T Consensus 118 ~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~ 197 (421)
T PRK12798 118 DGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQ 197 (421)
T ss_pred HHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHh
Confidence 333444447766666666543221 122222233332 23344567777777777777777765 2 34455556677
Q ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHhhhcCChHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHHcCChHH
Q 008550 396 FSKVKEALYAAREAMKAMPQSAKALK---LVGDVHASNASGREKAKKFYESALRL-EPGY-LGAALALAELHVIEGRNGD 470 (561)
Q Consensus 396 ~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~~~~~~~A~~~~~~a~~~-~p~~-~~~~~~la~~~~~~g~~~~ 470 (561)
.|+.++...+-.+.+..+..++.+.. ......... ++-. -...+...+.. +|.. ..+|..++..-.-.|+.+-
T Consensus 198 ~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~-~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~l 275 (421)
T PRK12798 198 LGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRL-DDEI-RDARLVEILSFMDPERQRELYLRIARAALIDGKTEL 275 (421)
T ss_pred cCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhc-cccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHH
Confidence 88888888888887777776654433 233333333 2111 11224444443 4332 4577788888888888888
Q ss_pred HHHHHHHHHhhCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHhc
Q 008550 471 AVSLLERYLKDWADD-----SLHVKLAQVFAATNMLQEALSHYEAA--LRINSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 471 A~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~~~~l~~l~~~~ 532 (561)
|.-.-+++..+.... .+.+..+..-.-..++++|.+.+..+ -++.|.|......-..+-..+
T Consensus 276 A~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~va~~V 344 (421)
T PRK12798 276 ARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEAARSVARQV 344 (421)
T ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHHHHHHHHHH
Confidence 888888888776433 34444455555556777777777654 234566666655555555444
No 471
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.44 E-value=29 Score=23.88 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
-++..|...=..|+|++|+.+|.++++..
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 44555666677899999999999999975
No 472
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.25 E-value=16 Score=33.65 Aligned_cols=67 Identities=13% Similarity=-0.097 Sum_probs=55.3
Q ss_pred cchHHHHHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHH
Q 008550 2 EVPKEQITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQ 68 (561)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 68 (561)
+.++..++..+..++|+.|........+++............+++++.|.+++..+++...+-.+-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4567788999999999999999888888876666666677889999999999999998887765543
No 473
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.83 E-value=26 Score=24.44 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=8.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 008550 498 TNMLQEALSHYEAALR 513 (561)
Q Consensus 498 ~g~~~~A~~~~~~al~ 513 (561)
.|+.++|+.+|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3455555555555443
No 474
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=54.79 E-value=74 Score=24.36 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
-+.++|+..++.+++-.++-.|++|+.+.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~s 31 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLS 31 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999874
No 475
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.72 E-value=1.5e+02 Score=26.20 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=10.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Q 008550 255 MAKVDAIIGKNDEAILNFEKVRS 277 (561)
Q Consensus 255 la~~~~~~~~~~~A~~~~~~~~~ 277 (561)
+|.+..+.++|++.+.+..++++
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~ 29 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAK 29 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Confidence 34444444444444444444444
No 476
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.35 E-value=1e+02 Score=27.04 Aligned_cols=90 Identities=9% Similarity=-0.036 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 108 NEVKYKIASCHFALGETKAAIVEMEGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~~A~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
.-..+..|..++..+++++|+..+-.....| .....+..++...|+...|+.+++. .+-...+.++...+..+ ..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~---~~~~~Il~~L~~~~~~~lAL~y~~~-~~p~l~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIP---WFPDKILQALLRRGDPKLALRYLRA-VGPPLSSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCc---ccHHHHHHHHHHCCChhHHHHHHHh-cCCCCCCHHHHHHHHHH-HH
Confidence 3456667777777888888888875532222 2222344455557778777776664 33344455544443333 44
Q ss_pred cccHhHHhhcccccc
Q 008550 188 PKDIISLFAQTPNRS 202 (561)
Q Consensus 188 ~~~~~~~~~~~~~~~ 202 (561)
.+...+++.......
T Consensus 153 ~~~v~EAf~~~R~~~ 167 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYP 167 (226)
T ss_pred cCCHHHHHHHHHhCc
Confidence 566666666555443
No 477
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=52.79 E-value=2.7e+02 Score=28.32 Aligned_cols=153 Identities=20% Similarity=0.160 Sum_probs=90.5
Q ss_pred hHHHHHHHHhHHhCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcC--ChHHHHHHHHHH
Q 008550 367 EAAVIAFRGAQELRPDLRSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNAS--GREKAKKFYESA 444 (561)
Q Consensus 367 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~a 444 (561)
..|.++++.++.-.|.- ++..-|+.++|+..+++-... ..........+.++... + ....-..+|+.+
T Consensus 301 k~a~KYLR~al~s~p~v--------lLl~~~~l~eal~~~e~~c~~-~~~~lpi~~~~~lle~~-d~~~~~~l~~~~e~~ 370 (547)
T PF14929_consen 301 KYAVKYLRLALQSNPPV--------LLLIGGRLKEALNELEKFCIS-STCALPIRLRAHLLEYF-DQNNSSVLSSCLEDC 370 (547)
T ss_pred HHHHHHHHHHhcCCCCe--------EEeccccHHHHHHHHHHhccC-CCccchHHHHHHHHHHh-CcccHHHHHHHHHHH
Confidence 34444554444444432 344557888888777664322 22333444455555544 4 456667888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH---HhhCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHh-------
Q 008550 445 LRLEPGYLGAALALAELHVIEGRNGDAVSLLERY---LKDWADDSLHVKLAQVFAA-TNMLQEALSHYEAALR------- 513 (561)
Q Consensus 445 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~------- 513 (561)
++.+|........+...+.. ...+.++++-. +...|...+|..++.++.+ .++++.-.+....+++
T Consensus 371 ~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LD 447 (547)
T PF14929_consen 371 LKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLD 447 (547)
T ss_pred hcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhccc
Confidence 88888876655555554444 44555555522 3444677899999999988 5666544555555542
Q ss_pred c--CCccHHHHHHHHHHHHhc
Q 008550 514 I--NSQNEAAKKGLERLEKQM 532 (561)
Q Consensus 514 ~--~p~~~~~~~~l~~l~~~~ 532 (561)
. .-.|..+|..+......+
T Consensus 448 f~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 448 FAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred ccccccccHHHHHHHHHhhHh
Confidence 2 234667788777766544
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.48 E-value=33 Score=23.88 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=8.1
Q ss_pred CChHHHHHHHHHHHH
Q 008550 432 SGREKAKKFYESALR 446 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~ 446 (561)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 479
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.16 E-value=75 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIG 263 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 263 (561)
+..|...+..|++..|.+.+.++.+..+..+-.+..-+++-..+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344677777777777777777775554443444444455544444
No 480
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=52.14 E-value=1.1e+02 Score=30.87 Aligned_cols=68 Identities=16% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHhc-CCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCC
Q 008550 118 HFALGETKAAIVEMEG-IPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGAT 187 (561)
Q Consensus 118 ~~~~~~~~~A~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 187 (561)
+.+....+.+...++. ++....+....+..+..+-..|..+.|-.+|++++..+|+ +.+...++-..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 3455667778888877 5666666777788899999999999999999999999998 555555433333
No 481
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.78 E-value=1.4e+02 Score=24.91 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=30.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q 008550 222 AQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGK 264 (561)
Q Consensus 222 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 264 (561)
..+++..|.+++|.+++++... +|++......+..+-...+.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc
Confidence 5678888999999999998887 77766665555555444433
No 482
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=51.27 E-value=56 Score=25.07 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHHH
Q 008550 489 VKLAQVFAATNMLQEALSHYEAALRINSQNEAAK 522 (561)
Q Consensus 489 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 522 (561)
..+|..+...|++++|..+|-+|+...|+-....
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666666777777777777777766555443
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.58 E-value=3.4e+02 Score=28.99 Aligned_cols=53 Identities=32% Similarity=0.509 Sum_probs=42.2
Q ss_pred HHHHHhhhhhhhHHhHHHHHHHhccCCCCCchhhhHHHHHHHHHHhhhchhHHHHHHHHHHHHh
Q 008550 8 ITALIDQGLYDSAQMLGCFLVSSSAINGETSPHLKAENLIILGDSLFRDREYRRAIHTYKQALQ 71 (561)
Q Consensus 8 ~~~~~~~~~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 71 (561)
=+.+++.|.|+.|...+. ..|...-.++...|+.+|+.++|..|..+|-+.+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar-----------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIAR-----------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHhcchHHHHHHhcc-----------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 356889999999987542 22455556889999999999999999999988754
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.02 E-value=99 Score=22.59 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
..+..+|.+|...|+.+.|..-|+.--.+.|++...
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 456667777777777777777777666666665443
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.90 E-value=2.5e+02 Score=26.90 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC----C-----Ch
Q 008550 418 KALKLVGDVHASNASGREKAKKFYESALRLEPGY---LGAALALAELHVIEGRNGDAVSLLERYLKDW----A-----DD 485 (561)
Q Consensus 418 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~-----~~ 485 (561)
.++..+|.-|... |+++.|++.|.++-....+. ...+.++..+-...|+|..-..+..++.... . ..
T Consensus 151 ra~~Dl~dhy~~c-G~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 151 RALEDLGDHYLDC-GQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHh-ccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3555666667666 77777777777754433222 3345566666666777766666666665541 0 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCccHHHHHHHHH
Q 008550 486 SLHVKLAQVFAATNMLQEALSHYEAALRI--------NSQNEAAKKGLER 527 (561)
Q Consensus 486 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~ 527 (561)
.+...-|.+...+++|..|.++|-.+..- .|.+..++-.|..
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 34555566666777888888877665322 3455555554443
No 486
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.76 E-value=2e+02 Score=25.86 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHh--------cCCHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---cCHhHH
Q 008550 267 EAILNFEKVRSIDPYIMTYMDEYAMLLKV--------KCDYSKLSKLVHDLLSIDPSRPEVFVALSVLWER---KDERGA 335 (561)
Q Consensus 267 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~A 335 (561)
.|++.-...+..+|.....|...-.+... ..-.+.-...+..+++-+|.+-.+|...-.++.. .++..-
T Consensus 50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE 129 (328)
T COG5536 50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE 129 (328)
T ss_pred HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHH------HhcCChhHHHHHHHHhHHhCCCh-HHHHHH---HHHHHhcCC------H
Q 008550 336 LSYAEKSIRIDERHIPGYIMKGNLL------LSMKRPEAAVIAFRGAQELRPDL-RSYQGL---VHSYLQFSK------V 399 (561)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~~------~ 399 (561)
+...++++..++.+.-.|...-.+. .....+..-.++-..++..++.+ .+|... .......|+ +
T Consensus 130 l~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l 209 (328)
T COG5536 130 LFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYL 209 (328)
T ss_pred HHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHH
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH
Q 008550 400 KEALYAAREAMKAMPQSAKALKLVGDV 426 (561)
Q Consensus 400 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 426 (561)
++-+++.-..+-.+|++..+|..+-.+
T Consensus 210 ~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 210 EKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHHHHHHHhhhhcCccccchhhHHHHH
No 487
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=47.84 E-value=47 Score=18.21 Aligned_cols=13 Identities=38% Similarity=0.465 Sum_probs=6.1
Q ss_pred CHhHHHHHHHHHH
Q 008550 331 DERGALSYAEKSI 343 (561)
Q Consensus 331 ~~~~A~~~~~~~~ 343 (561)
+..+|+.+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4444555554443
No 488
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.45 E-value=48 Score=22.85 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 44 ENLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 44 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
..++..|...-..|+|++|..+|..+++..
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345666666677899999999999999863
No 489
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.15 E-value=41 Score=22.55 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=10.3
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 008550 495 FAATNMLQEALSHYEAALR 513 (561)
Q Consensus 495 ~~~~g~~~~A~~~~~~al~ 513 (561)
....|++++|+.+|.++++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3445566665555555543
No 490
>PRK09687 putative lyase; Provisional
Probab=46.92 E-value=2.3e+02 Score=25.86 Aligned_cols=128 Identities=11% Similarity=0.024 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008550 384 RSYQGLVHSYLQFSKVKEALYAAREAMKAMPQSAKALKLVGDVHASNASGREKAKKFYESALRLEPGYLGAALALAELHV 463 (561)
Q Consensus 384 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 463 (561)
.+....+..+...++ .+|+..+-.++. ++ ++.+...-+..+-...-....+...+.+++. ..+..+...-+..+.
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~-~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~~aLg 217 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK-DP-NGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc-CC-CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHHHHHH
Confidence 333334444444443 345555555554 22 2233332222222210123455555555552 223445555555555
Q ss_pred HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccHHH
Q 008550 464 IEGRNGDAVSLLERYLKDWADDSLHVKLAQVFAATNMLQEALSHYEAALRINSQNEAA 521 (561)
Q Consensus 464 ~~g~~~~A~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 521 (561)
+.|+ ..|+..+-+.++... +.......+-..|.. +|+..+.+.++.+|+....
T Consensus 218 ~~~~-~~av~~Li~~L~~~~---~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 218 LRKD-KRVLSVLIKELKKGT---VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEII 270 (280)
T ss_pred ccCC-hhHHHHHHHHHcCCc---hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHH
Confidence 5555 456666655554322 234445555555653 5777777777666644333
No 491
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.79 E-value=1.5e+02 Score=23.34 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=61.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHhcC
Q 008550 219 YVEAQCCIASNDYKGGLELFAELLQRFPNNIHILLEMAKVDAIIGKNDEAILNFEKVRSIDPYIM-TYMDEYAMLLKVKC 297 (561)
Q Consensus 219 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 297 (561)
+..|.-..-.|..++..++..+.....+-.-.-|+. ..+ ...-+-+--.+.++..-+...-++ .-+.....++...|
T Consensus 6 LmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvI-CNi-iDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n 83 (161)
T PF09205_consen 6 LMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVI-CNI-IDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN 83 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHH-HHH-HHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT
T ss_pred HHHHHHHHHhchHHHHHHHHHHHcCcCCccccceee-eec-chhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc
Confidence 455777888899999999999998766543222221 111 111111111222222211111000 11122223333332
Q ss_pred CHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCHhHHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhH
Q 008550 298 DYSKLSKLVHDLLSIDPSRPEVFVALSVLWERKDERGALSYAEKSIRIDERHIPGYIMKGNLLLSMKRPEAAVIAFRGAQ 377 (561)
Q Consensus 298 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 377 (561)
...+ .+-..+..+-.+|+-++--+.+....+....+|..+..+|.+|.+.|+..++-+.+.++.
T Consensus 84 ~~se----------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 84 KLSE----------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ---H----------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chHH----------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 2211 111112222222555555555555554444556667777777777777777777776665
Q ss_pred Hh
Q 008550 378 EL 379 (561)
Q Consensus 378 ~~ 379 (561)
+.
T Consensus 148 ek 149 (161)
T PF09205_consen 148 EK 149 (161)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 492
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=45.27 E-value=56 Score=18.37 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhh
Q 008550 57 REYRRAIHTYKQALQY 72 (561)
Q Consensus 57 ~~~~~A~~~~~~al~~ 72 (561)
.++++|+.+|+++.+.
T Consensus 22 ~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 22 KDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHc
Confidence 3799999999998775
No 493
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.26 E-value=2.1e+02 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008550 435 EKAKKFYESALRLEPGYLGAALALAELHVIEGRNGDAVSLLERYLK 480 (561)
Q Consensus 435 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 480 (561)
.+|+.+..+++..+ ..++|++|..+|..+++
T Consensus 8 ~kaI~lv~kA~~eD---------------~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 8 QKAIDLVKKAIDED---------------NAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHhhhc---------------chhchHHHHHHHHHHHH
Confidence 55666666665543 23566677766666655
No 494
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.97 E-value=43 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=9.0
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 008550 496 AATNMLQEALSHYEAALR 513 (561)
Q Consensus 496 ~~~g~~~~A~~~~~~al~ 513 (561)
...|++++|+.+|..+++
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 344555555555555443
No 495
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=44.55 E-value=1.2e+02 Score=29.28 Aligned_cols=188 Identities=12% Similarity=0.015 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHhhhchhHHHHHHHHHHHHhhcccCccccccchhhhcc--cCCCCCCccccccc--CCChHHHHHHHHHH
Q 008550 42 KAENLIILGDSLFRDREYRRAIHTYKQALQYYKIVPKQNSTSSRSSLS--TSNRSSSPNSFNVS--AINENEVKYKIASC 117 (561)
Q Consensus 42 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~--~~~~~~~~~~~a~~ 117 (561)
.....|.-|...+..+++.+++..++++|+......+.. ..=+.... .+..+......... ...-..-+...+.|
T Consensus 30 p~~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~-~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~C 108 (471)
T KOG4459|consen 30 PHELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSE-AFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAAC 108 (471)
T ss_pred CHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhH-HHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHH
Confidence 345667889999999999999999999998752111100 00011111 00000000000000 00012233334444
Q ss_pred HHhcCCHHHHHHHH-hcCCCcccchhHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCcHHHHHHHHHHcCCcccHhHHhh
Q 008550 118 HFALGETKAAIVEM-EGIPSKARNLQMSLLMAKLYRNSRHNRGAVACYKECLRHCPFFIEAITALAELGATPKDIISLFA 196 (561)
Q Consensus 118 ~~~~~~~~~A~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 196 (561)
..+...---+...= .....+-.....+-.|-.+|.+.|+..+|+..-...+-.+|++..+...+..-....+....-+
T Consensus 109 l~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l- 187 (471)
T KOG4459|consen 109 LRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDEL- 187 (471)
T ss_pred HHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCcccc-
Confidence 43322111110000 0000000111345677788999999999999999999999998888777633221222111111
Q ss_pred ccccccCCCCCCCCChhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008550 197 QTPNRSGRAPFDHLDSSRWLHRYVEAQCCIASNDYKGGLELFAELL 242 (561)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 242 (561)
...........|.++...+..+++..+...+..++
T Consensus 188 -----------~DlE~~~~~~~Fir~v~~y~~~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 188 -----------TDLERREHEQWFIRGVRLYSGEDPRQCVPEVELAL 222 (471)
T ss_pred -----------cccccchHHHHHHHHhhhccccCchhcchhHHHHH
Confidence 11223444555666777777777776666555544
No 496
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.37 E-value=49 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.++..|...-..|+|++|+.+|.++++..
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45566666778899999999999998863
No 497
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=44.10 E-value=5.5e+02 Score=29.48 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHhhCCC-
Q 008550 432 SGREKAKKFYESALRL----EPGY--LGAALALAELHVIEG--------------------RNGDAVSLLERYLKDWAD- 484 (561)
Q Consensus 432 ~~~~~A~~~~~~a~~~----~p~~--~~~~~~la~~~~~~g--------------------~~~~A~~~~~~~~~~~~~- 484 (561)
..+++|+.+|.++... .|.- .++...++.++.... .-.++...+.+++.....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 4468888999888632 2322 346667777777777 778888888888775532
Q ss_pred ----h--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 485 ----D--SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 485 ----~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
+ .++..+|.+|...|-..++.=+.+.++..
T Consensus 439 l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 439 LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 68899999999999988888777776654
No 498
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.74 E-value=1.6e+02 Score=28.41 Aligned_cols=94 Identities=17% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHH-----------HHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 008550 420 LKLVGDVHASNASGREKAKKFYESA-----------LRLEPGYLGAALALAELHVIEGR----------NGDAVSLLERY 478 (561)
Q Consensus 420 ~~~l~~~~~~~~~~~~~A~~~~~~a-----------~~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~ 478 (561)
++..|.+.... ..|++|+.++-.| ++.-.+.+-.-..+.|||+.+.+ ...|.+-|.++
T Consensus 166 ~hekaRa~m~r-e~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 166 LHEKARAAMER-EMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Q ss_pred HhhC------------CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008550 479 LKDW------------ADD----SLHVKLAQVFAATNMLQEALSHYEAALRI 514 (561)
Q Consensus 479 ~~~~------------~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 514 (561)
.-.+ |.- ..+..-|.+.+..|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=43.62 E-value=54 Score=22.54 Aligned_cols=29 Identities=28% Similarity=0.435 Sum_probs=22.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHhhc
Q 008550 45 NLIILGDSLFRDREYRRAIHTYKQALQYY 73 (561)
Q Consensus 45 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 73 (561)
.+...|...-..|++++|+.+|.++++..
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44556666777899999999999998863
No 500
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.26 E-value=5.1e+02 Score=28.90 Aligned_cols=162 Identities=19% Similarity=0.105 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhHHhCCChH------------------------------HHHHHHHHHHhcCCHH
Q 008550 351 PGYIMKGNLLLSMKRPEAAVIAFRGAQELRPDLR------------------------------SYQGLVHSYLQFSKVK 400 (561)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~l~~~~~~~~~~~ 400 (561)
...+.+|.+|...|+..+|+.+|.++..-..... .|....+++..-+-.+
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E 1000 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAE 1000 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHH
Confidence 3456678888888888888888877754321111 1334556667778888
Q ss_pred HHHHHHHHHHHHCCCCHH----HHHHHHHHHhhhcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHH---
Q 008550 401 EALYAAREAMKAMPQSAK----ALKLVGDVHASNASGREKAKKFYESALRLEPGYL---GAALALAELHVIEGRNGD--- 470 (561)
Q Consensus 401 ~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~g~~~~--- 470 (561)
.+.+...++++.-|++.. ....+-.-+... |.+-+|... +-.+|+.. ..+..+..+++..|+.+.
T Consensus 1001 ~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldl-gh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1001 EVCQLAVKAIENLPDDNPSVALISTTVFNHHLDL-GHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhch-hhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence 888888888886655422 333333444444 666666543 33455532 355667778888877542
Q ss_pred ---------HHH-HHHHHHhhCCCh--HHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCc
Q 008550 471 ---------AVS-LLERYLKDWADD--SLHVKLAQVFAATNMLQEAL-SHYEAALRINSQ 517 (561)
Q Consensus 471 ---------A~~-~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 517 (561)
-.. +++++-+..|.. ..|..|=..+...+++.+|- -+|+.+..+..+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 222 344444444432 45555555677778887765 567878777543
Done!